Citrus Sinensis ID: 017495
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.981 | 1.0 | 0.589 | 1e-132 | |
| Q00763 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.981 | 0.994 | 0.583 | 1e-131 | |
| Q43046 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.981 | 0.994 | 0.583 | 1e-130 | |
| Q43047 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.937 | 0.953 | 0.601 | 1e-128 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 0.959 | 0.959 | 0.590 | 1e-128 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.959 | 0.988 | 0.574 | 1e-127 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.981 | 0.994 | 0.570 | 1e-127 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.940 | 0.994 | 0.597 | 1e-126 | |
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.967 | 0.991 | 0.574 | 1e-126 | |
| Q41086 | 364 | Caffeic acid 3-O-methyltr | N/A | no | 0.937 | 0.953 | 0.587 | 1e-125 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 284/370 (76%), Gaps = 7/370 (1%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M ++ P N+ + ++EE A+RLA+A+VLPMVLKSAIEL+++++I + G G
Sbjct: 1 MGSANPDNKNSMTKEEEEACLSAMRLASASVLPMVLKSAIELDLLELIK-----KSGPGA 55
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
+S S++AA+LPT+NPDAP +LDR+L LLASY +L C+L++ +G +ER+Y AP+CKFL
Sbjct: 56 YVSPSELAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFL 115
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
KN+D S+A L L++ DKV MESWYHLKD +LEGGIPF +AYGMT FEY G DPRFN
Sbjct: 116 TKNEDG--VSMAALLLMNQDKVLMESWYHLKDAVLEGGIPFNKAYGMTAFEYHGKDPRFN 173
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
VFN+ MSNHS ++M KIL++Y+GF GLK +VDVGGG G TL MI S+YP IKGI+FDLP
Sbjct: 174 KVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLP 233
Query: 241 HVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
HV+ +APS+PGV+HVGGDMF +VP+GDAIF+KW+ H W+D HCLK LKNC EALPENGKV
Sbjct: 234 HVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPENGKV 293
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360
I+ E +LP P++ S+ D+ MLA GG+ER++KE+EALAK +GF G VCCA
Sbjct: 294 ILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFRGFIKVCCA 353
Query: 361 YNSWVMEFHK 370
YNSW+ME K
Sbjct: 354 YNSWIMELLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 467 bits (1201), Expect = e-131, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 284/370 (76%), Gaps = 7/370 (1%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M ++ + T V EE A++LA+A+VLPM+LK+AIEL++++I++ A G G
Sbjct: 1 MGSTGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKA-----GPGA 55
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
LS S+IA+ LPTKNPDAP +LDR+L LLASY IL CSL++ +G+VER+YG AP+CKFL
Sbjct: 56 FLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
KN+D SV+PL L++ DKV MESWY+LKD IL+GGIPF +AYGMT FEY GTDPRFN
Sbjct: 116 TKNEDGV--SVSPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFN 173
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
VFN+ MS+HS + M KIL+ Y+GF+GL LVDVGGG G + I S+YP IKGI+FDLP
Sbjct: 174 KVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLP 233
Query: 241 HVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
HV+ +APS+PGVEHVGGDMF +VP+ DA+F+KW+ H W+D HCLK LKNC++ALPENGKV
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKV 293
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360
I+VE ILP+ P+ ++ V D+ MLA GG+ER++KE+E LAK +GF G E++CCA
Sbjct: 294 ILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLAKGAGFQGFEVMCCA 353
Query: 361 YNSWVMEFHK 370
+N+ V+EF K
Sbjct: 354 FNTHVIEFRK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 465 bits (1196), Expect = e-130, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 282/370 (76%), Gaps = 7/370 (1%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M ++ + T V EE A++LA+A+VLPM+LK+AIEL++++I++ A G G
Sbjct: 1 MGSTGETQMTPTQVSDEEAHLFAMQLASASVLPMILKTAIELDLLEIMAKA-----GPGA 55
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
LS S+IA+ LPTKNPDAP +LDR+L LLASY IL CSL++ +G+VER+YG AP+CKFL
Sbjct: 56 FLSTSEIASHLPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
KN+D SV+PL L++ DKV MESWY+LKD ILEGGIPF +AYGMT FEY GTDPRFN
Sbjct: 116 TKNEDGV--SVSPLCLMNQDKVLMESWYYLKDAILEGGIPFNKAYGMTAFEYHGTDPRFN 173
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
VFN+ MS+HS + M KIL+ Y+GF+GL LVDVGGG G + I S+YP IKGI+FDLP
Sbjct: 174 KVFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLP 233
Query: 241 HVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
HV+ +APS+PGVEHVGGDMF +VP DA+F+KW+ H W+D HCLK LKNC++ALPENGKV
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKV 293
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360
I+VE ILP+ P+ ++ V D+ MLA GG+ER++KE+E LA +GF G E++CCA
Sbjct: 294 ILVECILPVAPDTSLATKGVVHVDVIMLAHNPGGKERTEKEFEGLANGAGFQGFEVMCCA 353
Query: 361 YNSWVMEFHK 370
+N+ V+EF K
Sbjct: 354 FNTHVIEFRK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43047|COMT3_POPKI Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1176), Expect = e-128, Method: Compositional matrix adjust.
Identities = 213/354 (60%), Positives = 277/354 (78%), Gaps = 7/354 (1%)
Query: 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP 76
+E A++L +++VLPMVLK+AIEL++++I++ A G G LLS S IA+ LPTKNP
Sbjct: 16 DEEANFAMQLISSSVLPMVLKTAIELDLLEIMAKA-----GPGALLSPSDIASHLPTKNP 70
Query: 77 DAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFL 136
DAP +LDR+L LLASY IL CSL++ +G+VER+YG A +CKFL KN+D SV+PL L
Sbjct: 71 DAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNEDGV--SVSPLCL 128
Query: 137 LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMN 196
++ DKV MESWYHLKD ILEGGIPF +AYGMT FEY GTDPRFN VFN+ MS+HS + M
Sbjct: 129 MNQDKVLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMK 188
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVG 256
KIL+ Y+GF+GL LVDVGGG G + I S+YP IKGI+FDLPHV+A+AP+FPGVE+VG
Sbjct: 189 KILESYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVG 248
Query: 257 GDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS 316
GDMF +VP+ DA+F+KW+ H W+DEHCL+LLKNC++ALPENGKVI+VE ILP+ P+ +
Sbjct: 249 GDMFVSVPKADAVFMKWICHDWSDEHCLRLLKNCYDALPENGKVILVECILPVAPDTSLA 308
Query: 317 SHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
+ V D MLA GG+ER+ KE+E LA+ +GF G E++CCA+N+ V+EF K
Sbjct: 309 TKGVMHVDAIMLAHNPGGKERTDKEFEGLARGAGFKGFEVMCCAFNTHVIEFRK 362
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus kitakamiensis (taxid: 34292) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1174), Expect = e-128, Method: Compositional matrix adjust.
Identities = 212/359 (59%), Positives = 275/359 (76%), Gaps = 4/359 (1%)
Query: 12 TSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL 71
T V EE A++LA+A+VLPMVLK+AIEL+V++I+ A + G G +S ++IAA+L
Sbjct: 14 THVSDEEANLFAMQLASASVLPMVLKAAIELDVLEIM--AKSIPHGSGAYISPAEIAAQL 71
Query: 72 PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSV 131
PT NPDAP +LDR+L LLASY ++ CSL+ +G+VER+YG AP+CKFL KN+D S+
Sbjct: 72 PTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGV--SL 129
Query: 132 APLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHS 191
APL L++ DKV MESWY+LKD IL+GGIPF +AYGMT FEY GTDPRFN VFN MS+HS
Sbjct: 130 APLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHS 189
Query: 192 ALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG 251
+ M KI ++Y GF+ L +VDVGGG G L MI ++YP IKGI+FDLPHV+ +AP +PG
Sbjct: 190 TITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGINFDLPHVIEDAPIYPG 249
Query: 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311
VEHVGGDMF +VP+GDAIF+KW+ H W+DEHCLK LKNC+ ALPE+GKVI+ E ILPL P
Sbjct: 250 VEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPEHGKVIVAECILPLSP 309
Query: 312 ENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
+ ++ V D MLA GG+ER++KE+EALA +GF G ++ CCA+N++VMEF K
Sbjct: 310 DPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFKGFKVACCAFNTYVMEFLK 368
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 208/362 (57%), Positives = 274/362 (75%), Gaps = 7/362 (1%)
Query: 9 NNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIA 68
N + ++E A++LA+A+VLPMVLKSA+EL++++I++ A G G +S S++A
Sbjct: 5 NQNLTQTEDEAFLFAMQLASASVLPMVLKSALELDLLEIMAKA-----GPGAAISPSELA 59
Query: 69 ARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDD 128
A+LPTKNP+AP +LDRML LLA+Y +L C+L+ +G+VER+Y AP+CK L KN D
Sbjct: 60 AQLPTKNPEAPVMLDRMLRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKLLTKNADG-- 117
Query: 129 GSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMS 188
SVAPL L++ DKV MESWYHL D +L+GG+PF +AYGMT FEY GTDPRFN VFN MS
Sbjct: 118 VSVAPLLLMNQDKVLMESWYHLTDAVLDGGVPFNKAYGMTAFEYHGTDPRFNKVFNRGMS 177
Query: 189 NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248
+HS + M KIL+ Y+GF+GL +VDVGGG G T+ MI S+YP IKGI+FDL HV+ +AP+
Sbjct: 178 DHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGINFDLSHVIEDAPA 237
Query: 249 FPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308
+PGVEHVG DMF +VP+ DAIF+KW+ H W+DEHCLK LKNC+EALP NGKV++ E ILP
Sbjct: 238 YPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPANGKVLVAECILP 297
Query: 309 LVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEF 368
P+ A++ D+ MLA GG+ER++KE+EALAK +GF+G CCAY +WVMEF
Sbjct: 298 ETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFTGFRRACCAYQTWVMEF 357
Query: 369 HK 370
HK
Sbjct: 358 HK 359
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 455 bits (1170), Expect = e-127, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 280/370 (75%), Gaps = 7/370 (1%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M ++ + T V EE A++LA+A+VLPMVLK+AIEL++++I++ A G G
Sbjct: 1 MGSTGETQMTPTQVSDEEANLFAMQLASASVLPMVLKAAIELDLLEIMAKA-----GPGV 55
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
LS + IA++LPTKNPDAP +LDRML LLASY IL SL+ +G+VER+YG P+CKFL
Sbjct: 56 FLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFL 115
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
KN++ S+APL L++ DKV +ESWYHLKD +LEGGIPF +AYGMT FEY GTDPRFN
Sbjct: 116 TKNEEGV--SIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFN 173
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
VFN M++HS + M KIL+ Y+GF+GL +VDVGGG G L MI S+YP IKGI+FDLP
Sbjct: 174 KVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIKGINFDLP 233
Query: 241 HVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
HV+ +AP +PGVEHVGGDMF +VP+GDAIF+KW+ H W+DEHCLK LKNC+ ALP+NGKV
Sbjct: 234 HVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALPDNGKV 293
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360
I+ E ILP+ P++ ++ V D+ MLA GG+ER+++E++ALAK +GF G + C A
Sbjct: 294 ILGECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTEQEFQALAKGAGFQGFNVACSA 353
Query: 361 YNSWVMEFHK 370
+N++V+EF K
Sbjct: 354 FNTYVIEFLK 363
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/355 (59%), Positives = 272/355 (76%), Gaps = 7/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE A+ LA+A+VLPMVLKSAIEL+++++I+ A G G +S S++AA+LPT N
Sbjct: 3 EEEACLFAMSLASASVLPMVLKSAIELDLLELIAKA-----GPGAYVSPSELAAQLPTHN 57
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
P+AP +LDR+L LLA+Y +L C L N +G VER+YG AP+CKFL KN D S+APL
Sbjct: 58 PEAPIMLDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGV--SMAPLL 115
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
L++ DKV MESWYHLKD +L+GGIPF +AYGMT FEY GTDPRFN VFN+ MSNHS + M
Sbjct: 116 LMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITM 175
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KIL+VYRGF+GLK +VDVGGG G TL MI S+YP IKGI+F+LPHV+ +APS GVEHV
Sbjct: 176 KKILEVYRGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHV 235
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMF +VP+GDAIF+KW+ H W+D+HC KLLKNC++ALP+NGKVI+ E +LP P+
Sbjct: 236 GGDMFVSVPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSL 295
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
++ V D+ MLA GG+ER++KE+EALAK +GF VC A N+W+ME K
Sbjct: 296 ATQNVVHVDVVMLAHNPGGKERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 275/369 (74%), Gaps = 11/369 (2%)
Query: 2 ANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGEL 61
A + P+ N+ D+EE A++LA+A+VLPMVLKSAIEL+++++I + G G
Sbjct: 4 ATNTPQINS----DEEENFLFAMQLASASVLPMVLKSAIELDLLELIK-----KSGAGAF 54
Query: 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121
+S +AA+LPT NPDA +LDR+L LL SY IL C L+ +G VER+YG AP+CKFL
Sbjct: 55 VSPVDLAAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLT 114
Query: 122 KNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNG 181
KN+D S+APL L++ DKV MESWYHL D +++GGIPF +AYGMT FEY GTDPRFN
Sbjct: 115 KNEDG--VSMAPLTLMNQDKVLMESWYHLSDAVVDGGIPFNKAYGMTAFEYHGTDPRFNK 172
Query: 182 VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPH 241
VFN+ MSNHS + M KIL+ Y GFDGLK +VDVGGG G TL MI S+YP IKGI+FDLPH
Sbjct: 173 VFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPH 232
Query: 242 VLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301
V+ +APS+PGVEHVGGDMF +VP+GDAIF+KW+ H W+DEHC+K LKNC++ALP+NGKVI
Sbjct: 233 VIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVI 292
Query: 302 IVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAY 361
+ E +LP P+ ++ V D+ MLA GG+ER++KE++ LAK +GF CCAY
Sbjct: 293 LAECVLPEAPDTGLATKNVVHIDVIMLAHNPGGKERTEKEFQGLAKAAGFKQFNKACCAY 352
Query: 362 NSWVMEFHK 370
N+W+ME K
Sbjct: 353 NTWIMELLK 361
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q41086|COMT2_POPTM Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/354 (58%), Positives = 275/354 (77%), Gaps = 7/354 (1%)
Query: 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP 76
+E A++L +++VLPMVLK+AIEL++++I++ A G G LL S IA+ LPTKNP
Sbjct: 16 DEEANFALQLISSSVLPMVLKTAIELDLLEIMAKA-----GPGALLPPSDIASHLPTKNP 70
Query: 77 DAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFL 136
+AP +LDR+L LLASY IL CSL++ +G+VER+YG A +CKFL +N+D SV+PL L
Sbjct: 71 NAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTRNEDGV--SVSPLCL 128
Query: 137 LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMN 196
++ DKV MESWYHLKD ILEGGIPF +AYGMT FEY GTDPRFN VFN+ MS HS + M
Sbjct: 129 MNQDKVLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSVHSKMAMK 188
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVG 256
KIL+ Y+GF+GL LVDVGGG G + I S+YP IKGI+FDLPHV+A+AP+FPGVE+VG
Sbjct: 189 KILETYKGFEGLASLVDVGGGTGAVVSTIVSKYPSIKGINFDLPHVIADAPAFPGVENVG 248
Query: 257 GDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS 316
GDMF +VP+ DA+F+KW+ H W+DEHCL LKNC++ALPENGKVI+VE ILP+ P+ +
Sbjct: 249 GDMFVSVPKADAVFMKWICHDWSDEHCLTFLKNCYDALPENGKVILVECILPVAPDTSLA 308
Query: 317 SHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
+ V D+ MLA GG+ER+ +E+E+LA+ +GF G E++CCA+N+ V+EF K
Sbjct: 309 TKGVMHVDVIMLAHNPGGKERTDREFESLARGAGFKGFEVMCCAFNTHVIEFRK 362
|
Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Populus tremuloides (taxid: 3693) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| 133902303 | 358 | putative caffeic acid methyltransferase | 0.940 | 0.972 | 0.726 | 1e-154 | |
| 188509921 | 358 | putative caffeic acid protein [Gossypioi | 0.937 | 0.969 | 0.725 | 1e-153 | |
| 133902324 | 358 | putative caffeic acid methyltransferase | 0.940 | 0.972 | 0.721 | 1e-152 | |
| 133902310 | 358 | putative caffeic acid methyltransferase | 0.940 | 0.972 | 0.721 | 1e-151 | |
| 133902316 | 358 | putative caffeic acid methyltransferase | 0.940 | 0.972 | 0.718 | 1e-151 | |
| 255558532 | 361 | o-methyltransferase, putative [Ricinus c | 0.948 | 0.972 | 0.754 | 1e-151 | |
| 47232556 | 371 | phloroglucinol O-methyltransferase [Rosa | 0.986 | 0.983 | 0.672 | 1e-147 | |
| 225462953 | 372 | PREDICTED: caffeic acid 3-O-methyltransf | 0.943 | 0.938 | 0.721 | 1e-147 | |
| 147818031 | 372 | hypothetical protein VITISV_033821 [Viti | 0.943 | 0.938 | 0.721 | 1e-147 | |
| 255558534 | 359 | o-methyltransferase, putative [Ricinus c | 0.951 | 0.980 | 0.721 | 1e-146 |
| >gi|133902303|gb|ABO41834.1| putative caffeic acid methyltransferase [Gossypium raimondii] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust.
Identities = 258/355 (72%), Positives = 303/355 (85%), Gaps = 7/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE+GKLAVRLANA VLPMVLKSA+ELN+ID ISAA G G LS S+IA+ LP+KN
Sbjct: 7 EEEVGKLAVRLANAVVLPMVLKSALELNIIDTISAA-----GDGAFLSPSQIASALPSKN 61
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
PDAP LLDRML LLAS+ IL+CS++ + G++ER+YGA P+CKFL+KNQD GS+APL
Sbjct: 62 PDAPVLLDRMLRLLASHSILKCSVKAKEKGEIERLYGAGPLCKFLVKNQDG--GSIAPLL 119
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
LLHHD+VFM+SWYHL D ILEGG+PF +AYGMT FEY GTD RFN VFN+AMSNH+AL+M
Sbjct: 120 LLHHDQVFMQSWYHLNDAILEGGVPFSKAYGMTAFEYPGTDQRFNRVFNQAMSNHTALIM 179
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KI+DVY+GFDGLKVLVDVGGGIGV L ITS+YP IKGI+FDLPHVLA+AP++ GVEHV
Sbjct: 180 RKIVDVYKGFDGLKVLVDVGGGIGVALSFITSKYPQIKGINFDLPHVLADAPTYSGVEHV 239
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMFE+VP+GDAIFLKW+LH W+DEHCLKL+KNCWEALP GKVIIVESILP VP+
Sbjct: 240 GGDMFESVPKGDAIFLKWILHDWSDEHCLKLVKNCWEALPNGGKVIIVESILPEVPDTSV 299
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SS+IV EQDLFMLAQ GG+ER+ KEYEALA +GFSG E++CCAYNSWVM+ K
Sbjct: 300 SSNIVCEQDLFMLAQNPGGKERTLKEYEALALKTGFSGCEVICCAYNSWVMQMEK 354
|
Source: Gossypium raimondii Species: Gossypium raimondii Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509921|gb|ACD56610.1| putative caffeic acid protein [Gossypioides kirkii] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/354 (72%), Positives = 303/354 (85%), Gaps = 7/354 (1%)
Query: 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP 76
EE+GKLAVRLANA VLPMVLKSA+ELN+ID ISAA G G LS S+IA+ LP+KNP
Sbjct: 8 EEVGKLAVRLANAVVLPMVLKSALELNIIDTISAA-----GDGTFLSPSQIASCLPSKNP 62
Query: 77 DAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFL 136
DAP LLDRML LLAS+ IL+CS++ + G++ER+YGA P+CKFL+KNQD GS+APL L
Sbjct: 63 DAPVLLDRMLRLLASHSILKCSVKAKEKGEIERLYGAGPLCKFLVKNQDG--GSIAPLLL 120
Query: 137 LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMN 196
LHHD+VFM+SWYHL D ILEGG+PF +AYGMT FEY GTD RFN VFN+AMSNH+ L+M
Sbjct: 121 LHHDQVFMQSWYHLNDAILEGGVPFSKAYGMTAFEYPGTDQRFNRVFNQAMSNHTTLIMR 180
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVG 256
KI+DVY+GFDGLKVLVDVGGGIGV L +ITS+YP IKGI+FDLPHVLA+AP+F GVEHVG
Sbjct: 181 KIVDVYKGFDGLKVLVDVGGGIGVALSLITSKYPQIKGINFDLPHVLADAPTFSGVEHVG 240
Query: 257 GDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS 316
GDMFE+VP+GDAIFLKW+LH W+DEHCLKLLKNCWEA+P G+VIIVESILP VP++ S
Sbjct: 241 GDMFESVPKGDAIFLKWILHDWSDEHCLKLLKNCWEAVPNGGRVIIVESILPEVPDSSVS 300
Query: 317 SHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
S+IV EQDLFMLAQ GG+ER+ KEYEALA +GFSG E++CCAYNSWVM+ K
Sbjct: 301 SNIVCEQDLFMLAQNPGGKERTLKEYEALALKTGFSGCEVICCAYNSWVMQMQK 354
|
Source: Gossypioides kirkii Species: Gossypioides kirkii Genus: Gossypioides Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|133902324|gb|ABO41852.1| putative caffeic acid methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/355 (72%), Positives = 301/355 (84%), Gaps = 7/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE+GKLAVRLANA VLPMVLKSA+ELN+ID ISAA G G LS S+IA+ LP+KN
Sbjct: 7 EEEVGKLAVRLANAVVLPMVLKSALELNIIDTISAA-----GDGAFLSPSQIASALPSKN 61
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
P AP LLDRML LLAS+ IL+CS++ + G++ER+YGA P+CKFL+KNQD GS+APL
Sbjct: 62 PGAPVLLDRMLRLLASHSILKCSVKAKEKGEIERLYGAGPLCKFLVKNQDG--GSIAPLL 119
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
LLHHD+VFM+SWYHL D ILEGG+PF +AYGMT FEY GTD RFN VFN+AMSNH+AL+M
Sbjct: 120 LLHHDQVFMQSWYHLNDAILEGGVPFSKAYGMTAFEYPGTDQRFNRVFNQAMSNHTALIM 179
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KI+DVY+GFDGLKVLVDVGGGIGV L ITS+YP IKGI+FDLPHVLA+AP++ GVEHV
Sbjct: 180 RKIVDVYKGFDGLKVLVDVGGGIGVALSFITSKYPQIKGINFDLPHVLADAPTYSGVEHV 239
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMFE+VP+GDAIFLKW+LH W+DEHCLKL+KNCWEALP GKVIIVESILP VP+
Sbjct: 240 GGDMFESVPKGDAIFLKWILHDWSDEHCLKLVKNCWEALPNGGKVIIVESILPEVPDTSV 299
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SS+IV EQDLFMLAQ GG+ER+ KEYEALA +GFS E++CCAYNSWVM+ K
Sbjct: 300 SSNIVCEQDLFMLAQNPGGKERTLKEYEALALKTGFSSCEVICCAYNSWVMQMEK 354
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|133902310|gb|ABO41840.1| putative caffeic acid methyltransferase [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 256/355 (72%), Positives = 300/355 (84%), Gaps = 7/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE+GKLAVRLANA VLPMVLKSA+ELN+ID I AA G G LS S+IA+ LP+KN
Sbjct: 7 EEEVGKLAVRLANAVVLPMVLKSALELNIIDTILAA-----GDGAFLSPSQIASALPSKN 61
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
PDAP LLDRML LLAS+ IL+CS++ + ++ER+YGA P+CKFL+KNQD GS+APL
Sbjct: 62 PDAPVLLDRMLRLLASHSILKCSVKAKEKEEIERLYGAGPLCKFLVKNQDG--GSIAPLL 119
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
LLHHD+VFM+SWYHL D ILEGG+PF +AYGMT FEY GTD RFN VFN+AMSNH+AL+M
Sbjct: 120 LLHHDQVFMQSWYHLNDAILEGGVPFSKAYGMTAFEYPGTDQRFNRVFNQAMSNHTALIM 179
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KI+DVY+GFDGLKVLVDVGGGIGV L ITS+YP IKGI+FDLPHVLA+AP++ GVEHV
Sbjct: 180 RKIVDVYKGFDGLKVLVDVGGGIGVALSFITSKYPQIKGINFDLPHVLADAPTYLGVEHV 239
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMFE+VP+GDAIFLKW+LH W+DEHCLKLLKNCWEALP GKVIIVESILP VP+
Sbjct: 240 GGDMFESVPKGDAIFLKWILHDWSDEHCLKLLKNCWEALPNGGKVIIVESILPEVPDTSV 299
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SS+IV EQDLFMLAQ GG+ER+ KEYE LA +GFSG E++CCAYNSWVM+ K
Sbjct: 300 SSNIVCEQDLFMLAQNPGGKERTLKEYEDLALKTGFSGCEVICCAYNSWVMQMEK 354
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|133902316|gb|ABO41845.1| putative caffeic acid methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/355 (71%), Positives = 300/355 (84%), Gaps = 7/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE+GKLAVRLANA VLPMVLKSA+ELN+ID I AA G G LS S+IA+ LP+KN
Sbjct: 7 EEEVGKLAVRLANAVVLPMVLKSALELNIIDTILAA-----GDGAFLSPSQIASALPSKN 61
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
PDAP LLDRML LLAS+ IL+C+++ + ++ER+YGA P+CKFL+KNQD GS+APL
Sbjct: 62 PDAPVLLDRMLRLLASHSILKCAVKAKEKEEIERLYGAGPLCKFLVKNQDG--GSIAPLL 119
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
LLHHD+VFM+SWYHL D ILEGG+PF +AYGMT FEY GTD RFN VFN+AMSNH+AL+M
Sbjct: 120 LLHHDQVFMQSWYHLNDAILEGGVPFSKAYGMTAFEYPGTDQRFNRVFNQAMSNHTALIM 179
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KI+DVY+GFDGLKVLVDVGGGIGV L ITS+YP IKGI+FDLPHVLA+AP++ GVEHV
Sbjct: 180 RKIVDVYKGFDGLKVLVDVGGGIGVALSFITSKYPQIKGINFDLPHVLADAPTYSGVEHV 239
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMFE+VP+GDAIFLKW+LH W+DEHCLKLLKNCWEALP GKVIIVESILP VP+
Sbjct: 240 GGDMFESVPKGDAIFLKWILHDWSDEHCLKLLKNCWEALPNGGKVIIVESILPEVPDTSV 299
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SS+IV EQDLFMLAQ GG+ER+ KEYE LA +GFSG E++CCAYNSWVM+ K
Sbjct: 300 SSNIVCEQDLFMLAQNPGGKERTLKEYEDLALKTGFSGCEVICCAYNSWVMQMEK 354
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558532|ref|XP_002520291.1| o-methyltransferase, putative [Ricinus communis] gi|223540510|gb|EEF42077.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/355 (75%), Positives = 305/355 (85%), Gaps = 4/355 (1%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKN 75
+EE GKLA+RLANA VLPMVLKSA+ELNVIDIIS A+++ G LS S+IAAR+PT+N
Sbjct: 7 EEETGKLAIRLANAVVLPMVLKSALELNVIDIISTATSS---GGASLSPSEIAARIPTEN 63
Query: 76 PDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLF 135
PDAP LLDRML LLASYDIL CSL DNG+VER+Y A PICKFL NQ + GSVAPLF
Sbjct: 64 PDAPILLDRMLRLLASYDILNCSLVTKDNGKVERLYSAKPICKFLTINQSQE-GSVAPLF 122
Query: 136 LLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVM 195
LLHHD+VFM+SWYH D ILEGGIPF RAYGMT FEY GTD RFN VFN+AMSNH+ L+M
Sbjct: 123 LLHHDEVFMKSWYHFNDAILEGGIPFNRAYGMTAFEYPGTDQRFNRVFNQAMSNHTTLIM 182
Query: 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHV 255
KILDVY+GF+GL VLVDVGGG+GV L +ITS+YP I+GISFDLPHVLA+APS+ GVEHV
Sbjct: 183 KKILDVYKGFEGLNVLVDVGGGVGVALNIITSKYPEIRGISFDLPHVLADAPSYAGVEHV 242
Query: 256 GGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA 315
GGDMF +VP+GDAIF+KW+LH W+DEHCLKLLKNCWEALP NGKVI+VESILP+ PEN
Sbjct: 243 GGDMFVSVPKGDAIFMKWILHDWSDEHCLKLLKNCWEALPNNGKVIVVESILPVAPENIV 302
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SSHIVFEQDLFMLAQ GG+ER+KKE+EALA SGFS E++CCAYNSWVMEFHK
Sbjct: 303 SSHIVFEQDLFMLAQNPGGKERTKKEFEALALRSGFSCYEVICCAYNSWVMEFHK 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|47232556|dbj|BAD18975.1| phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 253/376 (67%), Positives = 305/376 (81%), Gaps = 11/376 (2%)
Query: 1 MANSKPKRNNATSV------DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAA 54
M ++ P+ ++T + ++EE+GK A+RLAN +LPMVLKSA+ELNVIDII A
Sbjct: 1 MRSTSPQTIDSTPMSHPQQEEEEELGKQAIRLANVVILPMVLKSALELNVIDIIWGA--- 57
Query: 55 EDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114
G GE LS S IAA+LPTKN +AP +LDRML LLAS+ IL+CS + G +GQVER+Y A
Sbjct: 58 --GDGESLSPSDIAAQLPTKNSNAPAVLDRMLRLLASHSILKCSARTGSDGQVERLYSAG 115
Query: 115 PICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLG 174
PICKFL+K+Q+ SV PLFLLHHDKVFME W+HL D ILEGGIPF RAYGMT FEY
Sbjct: 116 PICKFLVKDQNGGTRSVGPLFLLHHDKVFMEGWFHLNDAILEGGIPFNRAYGMTAFEYPE 175
Query: 175 TDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKG 234
TD RFN VFN+AMSNH+ L++ KILDVYRGF+G+ VLVDVGGGIGVTL +IT++YP IKG
Sbjct: 176 TDERFNRVFNQAMSNHTTLILKKILDVYRGFEGINVLVDVGGGIGVTLNLITNKYPHIKG 235
Query: 235 ISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEAL 294
I+FDLPHVLA+APS+PGVEHVGGDMF++VP+GDAIF+KW+LH W+DEHCL LLKNC ++L
Sbjct: 236 INFDLPHVLADAPSYPGVEHVGGDMFKSVPQGDAIFMKWILHDWSDEHCLTLLKNCCKSL 295
Query: 295 PENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354
P +GKVI VESILP VP++ +S+IV EQDL M Q GG+ER+KKEYEALA SGFS L
Sbjct: 296 PSSGKVIFVESILPEVPDSTVTSNIVCEQDLLMFTQNPGGKERTKKEYEALALKSGFSRL 355
Query: 355 EIVCCAYNSWVMEFHK 370
E+VC AYNSWVMEFHK
Sbjct: 356 EVVCSAYNSWVMEFHK 371
|
Source: Rosa chinensis var. spontanea Species: Rosa chinensis Genus: Rosa Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462953|ref|XP_002268308.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/356 (72%), Positives = 302/356 (84%), Gaps = 7/356 (1%)
Query: 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTK 74
D+EE+GKLAVRLAN+ +LPM LKSA+ELN+I+I++ A G G LLS S+IAA+LP +
Sbjct: 20 DEEELGKLAVRLANSIILPMALKSALELNLIEIMAGA-----GDGALLSPSEIAAQLPAR 74
Query: 75 NPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPL 134
NPDAP LLDR+L LLASY ILRCSL+ DNG+VER+YG PICKFL +N D GS+ PL
Sbjct: 75 NPDAPVLLDRVLRLLASYSILRCSLRTLDNGEVERLYGVGPICKFLTRNPDG--GSIGPL 132
Query: 135 FLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALV 194
LLHHDKVFMESWYHL D ILEGGIPF RAYGMT FEYLGTD RFN VFNEAMSNHS L+
Sbjct: 133 LLLHHDKVFMESWYHLNDAILEGGIPFNRAYGMTDFEYLGTDQRFNRVFNEAMSNHSTLI 192
Query: 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEH 254
M +IL +Y+GF+GL+VLVDVGGGIGVTL +ITS YP IKGI++DL HVLA+APS+PGVEH
Sbjct: 193 MKRILQIYKGFEGLQVLVDVGGGIGVTLRIITSEYPQIKGINYDLSHVLADAPSYPGVEH 252
Query: 255 VGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314
VGGDMFE+VP+GDAIF+KW+LHGW+DEHCLKLL NC+EALP+NGKVIIVESIL + PEN
Sbjct: 253 VGGDMFESVPKGDAIFMKWILHGWSDEHCLKLLTNCFEALPDNGKVIIVESILHVAPENT 312
Query: 315 ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
S +I FEQDL MLAQ+ GG+ER++KEYE LA SGFSG +++C YNSWVMEFHK
Sbjct: 313 VSVNIPFEQDLLMLAQSPGGKERTQKEYETLAIKSGFSGCKVICSVYNSWVMEFHK 368
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147818031|emb|CAN69214.1| hypothetical protein VITISV_033821 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 257/356 (72%), Positives = 303/356 (85%), Gaps = 7/356 (1%)
Query: 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTK 74
D+EE+GKLAVRLAN+ +LPM LKSA+ELN+I+I++ A G G LL+ S+IAA+LP
Sbjct: 20 DEEELGKLAVRLANSIILPMALKSALELNLIEIMAGA-----GDGALLTPSEIAAQLPGL 74
Query: 75 NPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPL 134
NPDAP LLDR+L LLASY ILRCSL+ DNG+VER+YG PICKFL +N D GS+ PL
Sbjct: 75 NPDAPVLLDRVLRLLASYSILRCSLRTLDNGEVERLYGVGPICKFLTRNPDG--GSIGPL 132
Query: 135 FLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALV 194
FLLHHDKVFMESWYHL D ILEGGIPF RAYGMT FEYLGTD RFN VFNEAMSNHS L+
Sbjct: 133 FLLHHDKVFMESWYHLNDAILEGGIPFNRAYGMTDFEYLGTDQRFNRVFNEAMSNHSTLI 192
Query: 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEH 254
M +IL +Y+GF+GL+VLVDVGGGIGVTL +ITS YP IKGI++DLPHVLA+APS+PGVEH
Sbjct: 193 MKRILQIYKGFEGLQVLVDVGGGIGVTLRIITSEYPQIKGINYDLPHVLADAPSYPGVEH 252
Query: 255 VGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314
VGGDMFE+VP+GDAIF+KW+LHGW+DEHCLKLL NC++ALP+NGKVIIVESIL + PEN
Sbjct: 253 VGGDMFESVPKGDAIFMKWILHGWSDEHCLKLLTNCFKALPDNGKVIIVESILHVAPENT 312
Query: 315 ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
S +I FEQDL MLAQ+ GG+ER++KEYE LA SGFSG +++C YNSWVMEFHK
Sbjct: 313 VSVNIPFEQDLLMLAQSPGGKERTQKEYETLAIKSGFSGCKVICSVYNSWVMEFHK 368
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255558534|ref|XP_002520292.1| o-methyltransferase, putative [Ricinus communis] gi|223540511|gb|EEF42078.1| o-methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 257/356 (72%), Positives = 303/356 (85%), Gaps = 4/356 (1%)
Query: 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTK 74
+EE GKLA+RLANA VLPMVLKSA+ELNVIDIIS A+++ G LS S+IA+++PT+
Sbjct: 6 QEEETGKLAIRLANAVVLPMVLKSALELNVIDIISIATSS---GGASLSPSEIASKIPTE 62
Query: 75 NPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPL 134
NPDAP LLDRML LLASYDIL CSL +NG+VER+Y A PICKFL+ N+ + SVAPL
Sbjct: 63 NPDAPILLDRMLRLLASYDILHCSLVTKENGEVERLYSAKPICKFLVINEGQER-SVAPL 121
Query: 135 FLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALV 194
FLLHHD+VFM+S YH D I+EGG+PF+RAYGM FEYLGTD RF VFN+AMSNH+ L+
Sbjct: 122 FLLHHDEVFMKSCYHFNDAIIEGGVPFKRAYGMIGFEYLGTDQRFKRVFNQAMSNHTTLI 181
Query: 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEH 254
M KILDVY+GF+GLKVLVDVGGG+GVTL +I S YP IKGI+FDLPHVLA+APS+ GVEH
Sbjct: 182 MKKILDVYKGFEGLKVLVDVGGGVGVTLNIIISNYPEIKGINFDLPHVLADAPSYAGVEH 241
Query: 255 VGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314
VGGDMF +VP+GDAIF+KW+LHGW+DEHCLKLLK CWEALP NGKVI+VESILP+ PE
Sbjct: 242 VGGDMFVSVPKGDAIFMKWILHGWSDEHCLKLLKKCWEALPNNGKVIVVESILPVAPEKI 301
Query: 315 ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
SSHIVFEQDLFMLAQT GG+ER++KE+E LA SGFS +++CCAYNSWVMEFHK
Sbjct: 302 VSSHIVFEQDLFMLAQTAGGKERTQKEFEVLALRSGFSCCQVICCAYNSWVMEFHK 357
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 370 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.975 | 0.994 | 0.508 | 9.1e-100 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.948 | 0.975 | 0.495 | 2.7e-93 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.964 | 0.970 | 0.482 | 1.1e-92 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.948 | 0.921 | 0.489 | 2.2e-89 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.972 | 0.965 | 0.475 | 6e-87 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.943 | 0.935 | 0.480 | 1.3e-86 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.948 | 0.921 | 0.483 | 1.6e-86 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.972 | 0.965 | 0.470 | 2e-86 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.972 | 0.965 | 0.475 | 2e-86 | |
| TAIR|locus:2164087 | 378 | AT5G53810 [Arabidopsis thalian | 0.978 | 0.957 | 0.491 | 6.9e-86 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 188/370 (50%), Positives = 254/370 (68%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGE 60
M ++ + V +E A++LA+A+VLPM LKSA+EL++++ +G
Sbjct: 1 MGSTAETQLTPVQVTDDEAALFAMQLASASVLPMALKSALELDLLEIMAK-------NGS 53
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
+S ++IA++LPTKNP+AP +LDR+L LL SY +L CS + VER+YG P+CK+L
Sbjct: 54 PMSPTEIASKLPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCKYL 113
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
KN+D S+A L L++ DKV MESWYHLKD IL+GGIPF +AYGM+ FEY GTDPRFN
Sbjct: 114 TKNEDGV--SIAALCLMNQDKVLMESWYHLKDAILDGGIPFNKAYGMSAFEYHGTDPRFN 171
Query: 181 GVFNEAMSNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLP 240
VFN MSNHS + M KIL+ Y+ MI S+YP +KGI+FDLP
Sbjct: 172 KVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDLP 231
Query: 241 HVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
HV+ +APS PG+EHVGGDMF +VP+GDAIF+KW+ H W+DEHC+K LKNC+E+LPE+GKV
Sbjct: 232 HVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGKV 291
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360
I+ E ILP P++ S+ V D MLA GG+ER++KE+EALAK SGF G+++VC A
Sbjct: 292 ILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFKGIKVVCDA 351
Query: 361 YNSWVMEFHK 370
+ ++E K
Sbjct: 352 FGVNLIELLK 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
Identities = 179/361 (49%), Positives = 246/361 (68%)
Query: 11 ATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELLSASKIAAR 70
A S D EE A++L ++++LPM LK+AIEL +++ G+LL+ +++AA+
Sbjct: 9 AASAD-EEACMYALQLVSSSILPMTLKNAIELGLLETLVAAG------GKLLTPAEVAAK 61
Query: 71 LP-TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDG 129
LP T NP A ++DRML LLASY+++ C+++ G +G++ R Y AAP+CKFL N+D
Sbjct: 62 LPSTANPAAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGV-- 119
Query: 130 SVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSN 189
S+A L L++ DKV MESWY+LKD +L+GGIPF +AYGM+ FEY GTDPRFN VFNE M N
Sbjct: 120 SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMKN 179
Query: 190 HSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLPHVLANAPSF 249
HS ++ K+L+VY+ IT+ YP IKGI+FDLPHV++ A F
Sbjct: 180 HSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFDLPHVISEAQPF 239
Query: 250 PGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309
PGV HVGGDMF+ VP GDAI +KW+LH W+DEHC LLKNC++ALP +GKV++VE ILP+
Sbjct: 240 PGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHGKVVLVECILPV 299
Query: 310 VPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFH 369
PE + VF D+ MLA GGRER ++E+EALAK +GF ++ N++ +EF
Sbjct: 300 NPEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFKAIKTTYIYANAFAIEFT 359
Query: 370 K 370
K
Sbjct: 360 K 360
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
Identities = 175/363 (48%), Positives = 246/363 (67%)
Query: 11 ATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDG-HGELLSASKIAA 69
A + D EE A++LA++++LPM LK+AIEL +++ G LL+ +++A
Sbjct: 9 AAAAD-EEACMYALQLASSSILPMTLKNAIELGLLETLQSAAVAGGGGKAALLTPAEVAD 67
Query: 70 RLPTK-NPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDD 128
+LP+K NP A ++DRML LLASY+++RC ++ G +G++ R Y AAP+CK+L N+D
Sbjct: 68 KLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAAAPVCKWLTPNEDGV- 126
Query: 129 GSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMS 188
S+A L L++ DKV MESWY+LKD +L+GGIPF +AYGMT FEY GTD RFN VFNE M
Sbjct: 127 -SMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMK 185
Query: 189 NHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLPHVLANAPS 248
NHS ++ K+LD+Y + SR+P I+GI++DLPHV++ AP
Sbjct: 186 NHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPHVISEAPP 245
Query: 249 FPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307
FPGVEHVGGDMF +VPRG DAI +KW+LH W+DEHC +LLKNC++ALPE+GKV++VE +L
Sbjct: 246 FPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPEHGKVVVVECVL 305
Query: 308 PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVME 367
P + A VF D+ MLA GG+ER ++E+ LA+ +GF+G + N+W +E
Sbjct: 306 PESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKATYIYANAWAIE 365
Query: 368 FHK 370
F K
Sbjct: 366 FTK 368
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
Identities = 178/364 (48%), Positives = 235/364 (64%)
Query: 14 VDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELLSASKIAARLPT 73
VD++ + A + N PMVLK+A EL VID G+ LS +IA LPT
Sbjct: 24 VDEKMVSLQAESIVNTVAFPMVLKAAFELGVIDTIAAA-----GNDTWLSPCEIACSLPT 78
Query: 74 K--NPDAPFLLDRMLSLLASYDILRCSL----QNGDNGQVERVYGAAPICKFLIKNQDDD 127
K NP+AP LLDRMLSLL S+ IL+C + +NG G++ERVY A P+CK+ +++ D
Sbjct: 79 KPTNPEAPVLLDRMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGT 138
Query: 128 DGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAM 187
GS+ PLF+L H +VF ++W +LKDVILEG F A+GM FEY+ +D F +FN AM
Sbjct: 139 -GSLVPLFMLLHTQVFFKTWTNLKDVILEGRDAFNSAHGMKIFEYINSDQPFAELFNRAM 197
Query: 188 SNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLPHVLANAP 247
S S ++M K+LDVYR ++TS+YP IKG++FDL VL AP
Sbjct: 198 SEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHIKGVNFDLAQVLTQAP 257
Query: 248 SFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307
+PGVEHV GDMF VP+GDA+F+KW+LH W DE C+K+LKNCW++LPE GK+IIVE +
Sbjct: 258 FYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKILKNCWKSLPEKGKIIIVEFVT 317
Query: 308 PLVPEN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVM 366
P P+ SS+ VF DL ML Q +GG+ERS ++E LA SGF EI+C AY+ V+
Sbjct: 318 PKEPKGGDLSSNTVFAMDLLMLTQCSGGKERSLSQFENLAFASGFLRCEIICLAYSYSVI 377
Query: 367 EFHK 370
EFHK
Sbjct: 378 EFHK 381
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
Identities = 177/372 (47%), Positives = 242/372 (65%)
Query: 3 NSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELL 62
+S PK D E+G +AVRLANAA PMVLK+A+EL V D D L
Sbjct: 10 SSNPKTPIVVD-DDNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAAASRTDS---FL 65
Query: 63 SASKIAARLPT--KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
S +IA++LPT +NP+AP LLDRML LLASY +++C +G+ ERVY A PIC+F
Sbjct: 66 SPYEIASKLPTTPRNPEAPVLLDRMLRLLASYSMVKCG--KALSGKGERVYRAEPICRFF 123
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG-MTQFEYLGTDPRF 179
+K+ D GS+A +++ D VF+ +W LKDV+LEGG F RA+G M F+Y+GTD RF
Sbjct: 124 LKDNIQDIGSLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERF 183
Query: 180 NGVFNEAMSNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDL 239
+ +FN+ + + V+ K L+VY ++TS+YP IKGI+FDL
Sbjct: 184 SKLFNQ--TGFTIAVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDL 241
Query: 240 PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299
LA APS+PGVEHV GDMF +VP GDA+ LK +LH WTDE C+K+LKNCW++LPENGK
Sbjct: 242 TCALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGK 301
Query: 300 VIIVESILPLVPEN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358
V+++E + P EN +++I F+ D+ M Q +GG+ERS+ E+EALA SGF+ + VC
Sbjct: 302 VVVIELVTPDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVC 361
Query: 359 CAYNSWVMEFHK 370
AY+ W++EF K
Sbjct: 362 QAYHCWIIEFCK 373
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 173/360 (48%), Positives = 239/360 (66%)
Query: 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELLSASKIAARLPT- 73
D E+G +AVRLANAA PMVLK+A+EL V D D LS S+IA++LPT
Sbjct: 21 DDNELGLMAVRLANAAAFPMVLKAALELGVFDTLYAEASRSDS---FLSPSEIASKLPTT 77
Query: 74 -KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVA 132
+NP+AP LLDRML LLASY +++C + G+ ERVY A PIC+F +K+ D GS+A
Sbjct: 78 PRNPEAPVLLDRMLRLLASYSVVKCGKVS--EGKGERVYRAEPICRFFLKDNIQDIGSLA 135
Query: 133 PLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG-MTQFEYLGTDPRFNGVFNEAMSNHS 191
+++ D VF+ +W LKDV+LEGG F RA+G M F+Y+GTD RF+ +FN+ + +
Sbjct: 136 SQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERFSKLFNQ--TGFT 193
Query: 192 ALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLPHVLANAPSFPG 251
V+ K L+VY+ ++ S+YP IKGI+FDL LA APS+PG
Sbjct: 194 IAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTCALAQAPSYPG 253
Query: 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311
VEHV GDMF +VP GDA+ LK +LH WTDE C+K+LKNCW++LPE+GKV+++E + P
Sbjct: 254 VEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVVVIELVTPDEA 313
Query: 312 EN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
EN +++I F+ D+ M Q +GG+ERS+ E+EALA SGF+ + VC AY+ W++EF K
Sbjct: 314 ENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKFVCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 176/364 (48%), Positives = 235/364 (64%)
Query: 14 VDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELLSASKIAARLPT 73
+D++ + A + NA PMVLK+A+EL VID +G LS S+IA LP
Sbjct: 24 IDEKMVSLQAESIVNAVAFPMVLKAALELGVIDTIAAAS-----NGTWLSPSEIAVSLPN 78
Query: 74 K--NPDAPFLLDRMLSLLASYDILRC----SLQNGDNGQVERVYGAAPICKFLIKNQDDD 127
K NP+AP LLDRML LL S+ IL+C S +NG G++ERVY A PICK+ +K+ D
Sbjct: 79 KPTNPEAPVLLDRMLRLLVSHSILKCCMVESRENGQTGKIERVYAAEPICKYFLKDSDGS 138
Query: 128 DGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAM 187
GS++ L LL H +V +++W +LKDVILEG F A+ M FEY+ +D +F+ +F+ AM
Sbjct: 139 -GSLSSLLLLLHSQVILKTWTNLKDVILEGKDAFSSAHDMRLFEYISSDDQFSKLFHRAM 197
Query: 188 SNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDLPHVLANAP 247
S S +VM K+L+ YR +ITS+YP IKG++FDL VL AP
Sbjct: 198 SESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHIKGVNFDLAQVLTQAP 257
Query: 248 SFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307
+PGV+HV GDMF VP+GDAIF+KW+LH W DE C+K+LKNCW++LPE GKVIIVE I
Sbjct: 258 FYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKILKNCWKSLPEKGKVIIVEMIT 317
Query: 308 PLVPE-NQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVM 366
P+ P+ N S + V DL ML Q +GG+ERS ++E LA SGF EI+C +Y+ V+
Sbjct: 318 PMEPKPNDFSCNTVLGMDLLMLTQCSGGKERSLSQFENLAFASGFLLCEIICLSYSYSVI 377
Query: 367 EFHK 370
EFHK
Sbjct: 378 EFHK 381
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| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 175/372 (47%), Positives = 243/372 (65%)
Query: 3 NSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELL 62
+S PK D E+G +AVRLANAA PMVLK+++EL V D D L
Sbjct: 10 SSNPKTPIVVD-DDNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEASRTDS---FL 65
Query: 63 SASKIAARLPT--KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
S S+IA++LPT +NP AP LLDRML LLASY +++C + G+ +RVY A PIC+F
Sbjct: 66 SPSEIASKLPTTPRNPGAPVLLDRMLRLLASYSMVKC--EKVSVGKEQRVYRAEPICRFF 123
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG-MTQFEYLGTDPRF 179
+KN D GS+A +++ D VF+ +W LKDV+LEGG F RA+G M F+Y+GTD RF
Sbjct: 124 LKNNIQDIGSLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERF 183
Query: 180 NGVFNEAMSNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDL 239
+ +FN+ + + V+ K L+VY+ ++TS+YP IKGI+FDL
Sbjct: 184 SKLFNQ--TGFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDL 241
Query: 240 PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299
LA AP++PGVEHV GDMF +VP G+A+ LK +LH WTDE C+K+LKNCW++LP+NGK
Sbjct: 242 TCALAQAPTYPGVEHVAGDMFVDVPTGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGK 301
Query: 300 VIIVESILPLVPEN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358
V+++E + P EN +++I F+ D+ M Q +GG+ERS+ E+EALA SGFS + VC
Sbjct: 302 VVVIELVTPDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQFVC 361
Query: 359 CAYNSWVMEFHK 370
AY+ W++EF K
Sbjct: 362 QAYHCWIIEFCK 373
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| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 2.0e-86, P = 2.0e-86
Identities = 177/372 (47%), Positives = 242/372 (65%)
Query: 3 NSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGELL 62
+S PK D E+G +AVRLANAA PMVLK+++EL V D D L
Sbjct: 10 SSNPKTPIVVD-DDNELGLMAVRLANAAAFPMVLKASLELGVFDTLYAEASRTDS---FL 65
Query: 63 SASKIAARLPT--KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
S S+IA++LPT +NP AP LLDRML LLASY +++C + G+ ERVY A PIC+F
Sbjct: 66 SPSEIASKLPTTPRNPGAPVLLDRMLRLLASYSMVKC--EKVSVGKGERVYRAEPICRFF 123
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG-MTQFEYLGTDPRF 179
+KN D GS+A +++ D VF+ +W LKDV+LEGG F RA+G M F+Y+GTD RF
Sbjct: 124 LKNNIQDIGSLASQVIVNFDSVFLNTWAQLKDVVLEGGDAFGRAHGGMKLFDYMGTDERF 183
Query: 180 NGVFNEAMSNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISFDL 239
+ +FN+ + + V+ K L+VY+ ++TS+YP IKGI+FDL
Sbjct: 184 SKLFNQ--TGFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDL 241
Query: 240 PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299
LA APS+PGVEHV GDMF +VP GDA+ LK +LH WTDE C+K+LKNCW++LPENGK
Sbjct: 242 TCALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGK 301
Query: 300 VIIVESILPLVPEN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358
V+++E + P EN +++I F+ D+ M Q +GG+ERS+ E+EALA S F+ + VC
Sbjct: 302 VVVIELVTPDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASCFTHCKFVC 361
Query: 359 CAYNSWVMEFHK 370
AY+ W++EF K
Sbjct: 362 QAYHCWIIEFCK 373
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| TAIR|locus:2164087 AT5G53810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
Identities = 184/374 (49%), Positives = 233/374 (62%)
Query: 4 SKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDXXXXXXXXEDGHGEL-L 62
+KP R +EE LA RLANAA PMVLK+A+EL VID G G+L L
Sbjct: 10 TKPDRVKEEQEVEEEARLLARRLANAAASPMVLKAALELGVIDTITTV-----GGGDLWL 64
Query: 63 SASKIAARLPTK--NPDAPFLLDRMLSLLASYDILRCSL---QNGDNGQVERVYGAAPIC 117
S S+IA RLPTK N +AP LLDRML L S+ +L+C +NG G+VERVY A P+C
Sbjct: 65 SPSEIALRLPTKPCNLEAPALLDRMLRFLVSHSVLKCRTVIEENGQTGKVERVYAAEPVC 124
Query: 118 KFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDP 177
K+L+ DD GS A LF+L VF+++W HL+DVILEG F A+GM FEY+ D
Sbjct: 125 KYLLNKSDDVSGSFASLFMLDLSDVFIKTWTHLEDVILEGRDAFSSAHGMKLFEYIQADE 184
Query: 178 RFNGVFNEAMSNHSALVMNKILDVYRXXXXXXXXXXXXXXXXXXXXMITSRYPCIKGISF 237
RF VFN AM S +V K+L Y +ITS+YP + GI+F
Sbjct: 185 RFGKVFNRAMLESSTMVTEKVLKFYEGFKDVKTLVDVGGGLGNTLGLITSKYPHLIGINF 244
Query: 238 DLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPEN 297
DL VLANA S+PGV HV GDMF +P+GDAIF+KW+LH WTDE C+ +LKNCW++L EN
Sbjct: 245 DLAPVLANAHSYPGVNHVAGDMFIKIPKGDAIFMKWILHDWTDEQCVAILKNCWKSLEEN 304
Query: 298 GKVIIVESILPLVPEN-QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356
GK+IIVE + P+ ++ S+IVF D+ ML Q +GG+ER E+E LA SGFS I
Sbjct: 305 GKLIIVEMVTPVEAKSGDICSNIVFGMDMTMLTQCSGGKERDLYEFENLAYASGFSRCAI 364
Query: 357 VCCAYNSWVMEFHK 370
VC Y V+E +K
Sbjct: 365 VCAVYPFSVIEIYK 378
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42653 | OMT2_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5616 | 0.9108 | 0.9825 | N/A | no |
| Q9XGV9 | COMT2_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5803 | 0.9729 | 0.9972 | N/A | no |
| Q9FQY8 | COMT1_CAPAN | 2, ., 1, ., 1, ., 6, 8 | 0.5745 | 0.9594 | 0.9888 | N/A | no |
| Q43609 | COMT1_PRUDU | 2, ., 1, ., 1, ., 6, 8 | 0.5702 | 0.9810 | 0.9945 | N/A | no |
| Q6T1F6 | BMT_AMMMJ | 2, ., 1, ., 1, ., 6, 9 | 0.5180 | 0.9378 | 0.9802 | N/A | no |
| P46484 | COMT1_EUCGU | 2, ., 1, ., 1, ., 6, 8 | 0.5598 | 0.9513 | 0.9617 | N/A | no |
| Q00763 | COMT1_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5837 | 0.9810 | 0.9945 | N/A | no |
| P45986 | IMT1_MESCR | 2, ., 1, ., 1, ., 1, 2, 9 | 0.5706 | 0.9351 | 0.9479 | N/A | no |
| Q84N28 | FOMT1_WHEAT | 2, ., 1, ., 1, ., - | 0.5373 | 0.9486 | 0.975 | N/A | no |
| O82054 | COMT1_SACOF | 2, ., 1, ., 1, ., 6, 8 | 0.5399 | 0.9567 | 0.9779 | N/A | no |
| Q6ZD89 | OMT1_ORYSJ | 2, ., 1, ., 1, ., 7, 6 | 0.5299 | 0.9351 | 0.9402 | yes | no |
| Q43046 | COMT1_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.5837 | 0.9810 | 0.9945 | N/A | no |
| Q43047 | COMT3_POPKI | 2, ., 1, ., 1, ., 6, 8 | 0.6016 | 0.9378 | 0.9532 | N/A | no |
| O23760 | COMT1_CLABR | 2, ., 1, ., 1, ., 6, 8 | 0.5905 | 0.9594 | 0.9594 | N/A | no |
| P59049 | OMT1_CHRAE | 2, ., 1, ., 1, ., 7, 6 | 0.5616 | 0.9108 | 0.9825 | N/A | no |
| Q6T1F5 | COMT1_AMMMJ | 2, ., 1, ., 1, ., 6, 8 | 0.5758 | 0.9432 | 0.9561 | N/A | no |
| Q9FK25 | OMT1_ARATH | 2, ., 1, ., 1, ., 7, 6 | 0.5513 | 0.9756 | 0.9944 | yes | no |
| Q06509 | COMT1_MAIZE | 2, ., 1, ., 1, ., 6, 8 | 0.5164 | 0.9594 | 0.9752 | N/A | no |
| Q9SWC2 | COMT1_EUCGL | 2, ., 1, ., 1, ., 6, 8 | 0.5741 | 0.8378 | 0.9904 | N/A | no |
| Q9XGW0 | COMT1_OCIBA | 2, ., 1, ., 1, ., 6, 8 | 0.5745 | 0.9675 | 0.9916 | N/A | no |
| Q38J50 | FOMT2_WHEAT | 2, ., 1, ., 1, ., 1, 6, 9 | 0.5323 | 0.9351 | 0.9719 | N/A | no |
| O81646 | COMT1_CAPCH | 2, ., 1, ., 1, ., 6, 8 | 0.5662 | 0.9594 | 0.9888 | N/A | no |
| O04385 | IEMT_CLABR | 2, ., 1, ., 1, ., 1, 4, 6 | 0.5487 | 0.9540 | 0.9592 | N/A | no |
| Q8W013 | COMT1_CATRO | 2, ., 1, ., 1, ., 6, 8 | 0.5891 | 0.9810 | 1.0 | N/A | no |
| A8J6X1 | BMT_GLELI | 2, ., 1, ., 1, ., 6, 9 | 0.5365 | 0.9351 | 0.9637 | N/A | no |
| Q43239 | COMT1_ZINEL | 2, ., 1, ., 1, ., 6, 8 | 0.5685 | 0.9243 | 0.9661 | N/A | no |
| Q8GU25 | COMT1_ROSCH | 2, ., 1, ., 1, ., 6, 8 | 0.5594 | 0.9810 | 0.9945 | N/A | no |
| Q41086 | COMT2_POPTM | 2, ., 1, ., 1, ., 6, 8 | 0.5875 | 0.9378 | 0.9532 | N/A | no |
| Q8LL87 | COMT1_COFCA | 2, ., 1, ., 1, ., 6, 8 | 0.5971 | 0.9405 | 0.9942 | N/A | no |
| P28002 | COMT1_MEDSA | 2, ., 1, ., 1, ., 6, 8 | 0.5513 | 0.9810 | 0.9945 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00005864001 | SubName- Full=Chromosome undetermined scaffold_160, whole genome shotgun sequence; (362 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 370 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 1e-117 | |
| pfam08100 | 50 | pfam08100, Dimerisation, Dimerisation domain | 1e-16 | |
| TIGR02716 | 306 | TIGR02716, C20_methyl_CrtF, C-20 methyltransferase | 4e-08 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 2e-04 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 338 bits (869), Expect = e-117
Identities = 130/240 (54%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 108 ERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGM 167
YG P K L+K +D S+APL L++ D +ESW HLKD + EGG PF RA+GM
Sbjct: 4 GEDYGLTPASKLLVK--GEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGPPFERAFGM 61
Query: 168 TQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITS 227
FEYLG DP FN VFN AM+ HS LVM KIL+ F GL LVDVGGG G I
Sbjct: 62 PFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVR 121
Query: 228 RYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLL 287
YP IKGI FDLPHV+A+APS VE VGGD FE+VP DAI LKW+LH W+DE C+K+L
Sbjct: 122 AYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKIL 181
Query: 288 KNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347
K C+EALP GKVI+VE +LP P++ + V DL ML GG+ER++KE+ L
Sbjct: 182 KRCYEALPPGGKVIVVEMVLPEDPDDDLETE-VLLLDLNMLVL-NGGKERTEKEWRKLLS 239
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This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|219719 pfam08100, Dimerisation, Dimerisation domain | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 1e-16
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 7/57 (12%)
Query: 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90
MVLK AIEL + DII+ HG+ LS S++A++LPT NP+AP +LDR+L LLA
Sbjct: 1 MVLKCAIELGIPDIIA-------KHGKPLSPSELASKLPTVNPEAPVMLDRLLRLLA 50
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This domain is found at the N-terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins. Length = 50 |
| >gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 4e-08
Identities = 28/138 (20%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 178 RFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISF 237
R + ++ E + +A ++L DG+K ++DVGGGIG + +P +
Sbjct: 120 REDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTIL 179
Query: 238 DLPHVL-------ANAPSFPGVEHVGGDMF-ENVPRGDAIFLKWMLHGWTDEHCLKLLKN 289
+LP + A + + D++ E+ P DA+ +L+ ++ + K
Sbjct: 180 NLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKK 239
Query: 290 CWEALPENGKVIIVESIL 307
++A+ G+++I++ ++
Sbjct: 240 AFDAMRSGGRLLILDMVI 257
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Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 26/109 (23%), Positives = 42/109 (38%), Gaps = 16/109 (14%)
Query: 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA------PSFPGVEHVGGD 258
G +VL D+G G G + +P + DL P +L A P + V GD
Sbjct: 1 PGARVL-DIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59
Query: 259 M---FENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304
+ + DA+F+ G L+LL L G++++
Sbjct: 60 APDALDLLEGFDAVFI-----GGGGGDLLELLDALASLLKPGGRLVLNA 103
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Protein in this family function as methyltransferases. Length = 104 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.78 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.77 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.77 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.75 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.74 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.72 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.71 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.71 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.67 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.62 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.62 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.6 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.6 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.6 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.6 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.59 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.59 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.59 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.59 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.58 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.58 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.56 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.56 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.54 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.54 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.52 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.52 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.52 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.52 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.49 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.47 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.47 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.46 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.46 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.45 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.44 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.44 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.43 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.43 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.42 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.42 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.41 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.4 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.39 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.37 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.34 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.34 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.33 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.33 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.32 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.31 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.29 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.29 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.28 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.24 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.24 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.23 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.23 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.23 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.21 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.21 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.2 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.19 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.17 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.17 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.16 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.15 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.14 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.13 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.13 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.11 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.1 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.1 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.07 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.06 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.06 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.05 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.05 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.04 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.03 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.03 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.02 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.99 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.98 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.98 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.98 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.97 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.96 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.94 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.93 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.93 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.93 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.91 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.9 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.9 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.9 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.89 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.89 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.87 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.85 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.83 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.82 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.82 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.81 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.8 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.8 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.8 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.78 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.75 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.73 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.72 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.72 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.72 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.7 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.69 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.68 | |
| PLN02366 | 308 | spermidine synthase | 98.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.66 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.64 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.62 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.62 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.58 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.55 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.54 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.53 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.5 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.5 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.48 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.47 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.46 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.46 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.44 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.43 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.4 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.38 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.35 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.34 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.33 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.32 | |
| PLN02476 | 278 | O-methyltransferase | 98.27 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.27 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.26 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.24 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.21 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.18 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.18 | |
| PLN02823 | 336 | spermine synthase | 98.17 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.17 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.16 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.12 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.11 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.11 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.09 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.07 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.07 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.06 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.05 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.02 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.02 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.99 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.99 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.98 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.95 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.9 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.9 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.88 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.83 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.82 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.82 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.79 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.79 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.77 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.76 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.74 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.73 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.72 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.66 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.63 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.6 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.56 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.56 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.55 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.55 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.54 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.49 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.47 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.45 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.44 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.42 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.4 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.24 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 97.21 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.18 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.15 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.13 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.07 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.06 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.04 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.03 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.03 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.97 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.93 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 96.85 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.82 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.82 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.82 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.82 | |
| PF01022 | 47 | HTH_5: Bacterial regulatory protein, arsR family; | 96.8 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.76 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.72 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.72 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 96.72 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.68 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 96.67 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 96.62 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 96.61 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 96.53 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.52 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 96.51 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.49 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 96.48 | |
| PRK10141 | 117 | DNA-binding transcriptional repressor ArsR; Provis | 96.47 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 96.4 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 96.38 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 96.32 | |
| PHA00738 | 108 | putative HTH transcription regulator | 96.3 | |
| PF13601 | 80 | HTH_34: Winged helix DNA-binding domain; PDB: 1UB9 | 96.29 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 96.28 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 96.23 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.21 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.19 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.17 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.12 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 96.11 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 96.11 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.08 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.0 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 96.0 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 95.95 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 95.92 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 95.9 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.79 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 95.78 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.77 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 95.76 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 95.74 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 95.71 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 95.65 | |
| COG2345 | 218 | Predicted transcriptional regulator [Transcription | 95.55 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 95.53 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.46 | |
| PF14947 | 77 | HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_ | 95.45 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 95.39 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 95.34 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 95.23 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 95.17 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 95.14 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 95.09 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 95.09 | |
| PRK06266 | 178 | transcription initiation factor E subunit alpha; V | 94.97 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 94.95 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 94.91 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 94.85 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 94.81 | |
| TIGR02702 | 203 | SufR_cyano iron-sulfur cluster biosynthesis transc | 94.78 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 94.73 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 94.72 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 94.69 | |
| PRK11050 | 152 | manganese transport regulator MntR; Provisional | 94.66 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 94.53 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 94.47 | |
| TIGR02337 | 118 | HpaR homoprotocatechuate degradation operon regula | 94.47 | |
| PF04703 | 62 | FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. | 94.44 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 94.27 | |
| smart00347 | 101 | HTH_MARR helix_turn_helix multiple antibiotic resi | 94.27 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 94.2 | |
| PF01638 | 90 | HxlR: HxlR-like helix-turn-helix; InterPro: IPR002 | 94.15 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 94.0 | |
| PF04967 | 53 | HTH_10: HTH DNA binding domain; InterPro: IPR00705 | 93.93 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 93.91 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 93.88 | |
| COG4189 | 308 | Predicted transcriptional regulator [Transcription | 93.81 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 93.78 | |
| COG3355 | 126 | Predicted transcriptional regulator [Transcription | 93.76 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 93.73 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.7 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 93.68 | |
| PRK03902 | 142 | manganese transport transcriptional regulator; Pro | 93.62 | |
| PRK11512 | 144 | DNA-binding transcriptional repressor MarR; Provis | 93.56 | |
| PRK11920 | 153 | rirA iron-responsive transcriptional regulator; Re | 93.49 | |
| PF00325 | 32 | Crp: Bacterial regulatory proteins, crp family; In | 93.43 | |
| COG4190 | 144 | Predicted transcriptional regulator [Transcription | 93.4 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 93.38 | |
| COG4742 | 260 | Predicted transcriptional regulator [Transcription | 93.36 | |
| PF08220 | 57 | HTH_DeoR: DeoR-like helix-turn-helix domain; Inter | 93.29 | |
| COG4565 | 224 | CitB Response regulator of citrate/malate metaboli | 93.29 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 93.26 | |
| PRK06474 | 178 | hypothetical protein; Provisional | 93.11 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.87 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 92.84 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.8 | |
| smart00420 | 53 | HTH_DEOR helix_turn_helix, Deoxyribose operon repr | 92.75 | |
| PF01047 | 59 | MarR: MarR family; InterPro: IPR000835 The MarR-ty | 92.6 | |
| PRK11014 | 141 | transcriptional repressor NsrR; Provisional | 92.57 | |
| smart00344 | 108 | HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto | 92.48 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 92.44 | |
| COG1321 | 154 | TroR Mn-dependent transcriptional regulator [Trans | 92.35 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 92.34 | |
| PRK03573 | 144 | transcriptional regulator SlyA; Provisional | 92.31 | |
| TIGR01889 | 109 | Staph_reg_Sar staphylococcal accessory regulator f | 91.86 | |
| TIGR00122 | 69 | birA_repr_reg BirA biotin operon repressor domain. | 91.77 | |
| TIGR02944 | 130 | suf_reg_Xantho FeS assembly SUF system regulator, | 91.72 | |
| TIGR00373 | 158 | conserved hypothetical protein TIGR00373. This fam | 91.63 | |
| smart00345 | 60 | HTH_GNTR helix_turn_helix gluconate operon transcr | 91.3 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.3 | |
| smart00418 | 66 | HTH_ARSR helix_turn_helix, Arsenical Resistance Op | 91.24 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 91.21 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 91.16 | |
| PRK15431 | 78 | ferrous iron transport protein FeoC; Provisional | 91.16 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 91.07 | |
| COG1733 | 120 | Predicted transcriptional regulators [Transcriptio | 91.04 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 90.97 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 90.65 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 90.42 | |
| PF01726 | 65 | LexA_DNA_bind: LexA DNA binding domain; InterPro: | 90.22 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 90.09 | |
| PF08461 | 66 | HTH_12: Ribonuclease R winged-helix domain; InterP | 89.82 | |
| TIGR01884 | 203 | cas_HTH CRISPR locus-related DNA-binding protein. | 89.58 | |
| cd00090 | 78 | HTH_ARSR Arsenical Resistance Operon Repressor and | 89.55 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 89.26 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 89.1 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 88.99 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 88.83 | |
| PRK10870 | 176 | transcriptional repressor MprA; Provisional | 88.82 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.74 | |
| PRK05638 | 442 | threonine synthase; Validated | 88.59 | |
| PHA02943 | 165 | hypothetical protein; Provisional | 88.49 | |
| cd07377 | 66 | WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi | 88.41 | |
| smart00529 | 96 | HTH_DTXR Helix-turn-helix diphteria tox regulatory | 88.02 | |
| PF12692 | 160 | Methyltransf_17: S-adenosyl-L-methionine methyltra | 87.99 | |
| PRK14165 | 217 | winged helix-turn-helix domain-containing protein/ | 87.93 | |
| COG1497 | 260 | Predicted transcriptional regulator [Transcription | 87.33 | |
| PRK11179 | 153 | DNA-binding transcriptional regulator AsnC; Provis | 87.26 | |
| cd07153 | 116 | Fur_like Ferric uptake regulator(Fur) and related | 87.07 | |
| PF06163 | 127 | DUF977: Bacterial protein of unknown function (DUF | 87.0 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 86.89 | |
| PRK11169 | 164 | leucine-responsive transcriptional regulator; Prov | 86.63 | |
| TIGR01610 | 95 | phage_O_Nterm phage replication protein O, N-termi | 86.42 | |
| PF00392 | 64 | GntR: Bacterial regulatory proteins, gntR family; | 86.37 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 86.27 | |
| PF02002 | 105 | TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024 | 85.57 | |
| TIGR01321 | 94 | TrpR trp operon repressor, proteobacterial. This m | 85.32 | |
| COG1522 | 154 | Lrp Transcriptional regulators [Transcription] | 85.27 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 85.04 | |
| PF13384 | 50 | HTH_23: Homeodomain-like domain; PDB: 2X48_C. | 84.42 | |
| PF07109 | 97 | Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl | 84.26 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 84.2 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 84.16 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 84.11 | |
| PF12793 | 115 | SgrR_N: Sugar transport-related sRNA regulator N-t | 84.11 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 83.85 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 83.84 | |
| PF13518 | 52 | HTH_28: Helix-turn-helix domain | 83.71 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 83.66 | |
| PF12324 | 77 | HTH_15: Helix-turn-helix domain of alkylmercury ly | 83.57 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 83.48 | |
| PRK13777 | 185 | transcriptional regulator Hpr; Provisional | 83.2 | |
| PF13545 | 76 | HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: | 83.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 83.07 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 82.11 | |
| PRK10046 | 225 | dpiA two-component response regulator DpiA; Provis | 82.06 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 81.62 | |
| PF08784 | 102 | RPA_C: Replication protein A C terminal; InterPro: | 81.18 | |
| COG3432 | 95 | Predicted transcriptional regulator [Transcription | 80.98 | |
| PRK13509 | 251 | transcriptional repressor UlaR; Provisional | 80.93 | |
| TIGR03433 | 100 | padR_acidobact transcriptional regulator, Acidobac | 80.79 | |
| COG1846 | 126 | MarR Transcriptional regulators [Transcription] | 80.44 | |
| PRK09775 | 442 | putative DNA-binding transcriptional regulator; Pr | 80.03 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=325.05 Aligned_cols=336 Identities=55% Similarity=0.924 Sum_probs=299.3
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCC-CCCCCcchHHHHHHHHhcCCce
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT-KNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~~~g~l 95 (370)
++...+++++++++..++++.+|++|||||+|.+. + + ..|+|..+.. ++|..|..++|+||.|++.+++
T Consensus 4 ~~~~l~~~~l~~~~~~~~~lk~A~eL~v~d~l~~~-----~---~--p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~ 73 (342)
T KOG3178|consen 4 NEASLRAMRLANGFALPMVLKAACELGVFDILANA-----G---S--PSEIASLLPTPKNPEAPVLLDRILRLLVSYSIL 73 (342)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHcChHHHHHhC-----C---C--HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhc
Confidence 45667889999999999999999999999999987 1 2 7888888874 5777999999999999999999
Q ss_pred eccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccC
Q 017495 96 RCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGT 175 (370)
Q Consensus 96 ~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 175 (370)
+...+. + + .|++++.++++.+++. ..++++++...+.+..++.|.++.++++.+..++...+|+..++|...
T Consensus 74 k~~~~~---~--~-~Y~~~~~~~~~l~~~~--~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~ 145 (342)
T KOG3178|consen 74 KCRLVG---G--E-VYSATPVCKYFLKDSG--GGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGA 145 (342)
T ss_pred eeeeec---c--e-eeeccchhhhheecCC--CCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhccc
Confidence 975321 1 3 7999999997665544 378999988888899999999999999999999999999888999888
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-CCCeE
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-PGVEH 254 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-~rv~~ 254 (370)
+......+++.|...+......++..+.+|+.....+|||||.|..+..++..||.++++.+|+|.+++.+... +.|++
T Consensus 146 ~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~ 225 (342)
T KOG3178|consen 146 DERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEH 225 (342)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcce
Confidence 88888999999999998888888888888889999999999999999999999999999999999999999887 88999
Q ss_pred EeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC-CCCCccchhhhhhhhHHhhhcCC
Q 017495 255 VGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV-PENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 255 ~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
+.+|++.+.|.+|+|++.++||||+|++|.++|+||+..|+|+|+|++.|.+.++. ............+|+.|+....+
T Consensus 226 v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~ 305 (342)
T KOG3178|consen 226 VAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSG 305 (342)
T ss_pred ecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999988863 22222345567789999988778
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
|++|+.+||+.++.++||.+..+...+...++||++|
T Consensus 306 Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 306 GKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred ceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 9999999999999999999999999999999999987
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=291.80 Aligned_cols=289 Identities=15% Similarity=0.291 Sum_probs=211.1
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccce
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVY 111 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 111 (370)
..++|++|++|||||+|.++ |.|++|||+++++ +++.+++||++|++.|+|++. +++|
T Consensus 3 ~~~~l~aa~~Lglfd~L~~g---------p~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~---------~~~y 60 (306)
T TIGR02716 3 EFSCMKAAIELDLFSHMAEG---------PKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE---------DGKW 60 (306)
T ss_pred hHHHHHHHHHcCcHHHHhcC---------CCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec---------CCcE
Confidence 46899999999999999886 8999999999999 999999999999999999962 4789
Q ss_pred ecchhhhhhhcCCCCCCC---ChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHH
Q 017495 112 GAAPICKFLIKNQDDDDG---SVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMS 188 (370)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~ 188 (370)
++|+.+..+..+++ .. ++.++..+. .......|.+|.+++++ .++|...++ +....++. ..|...|.
T Consensus 61 ~~t~~~~~~l~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~-~~~~~~~~~-----~~~~~~~~-~~~~~~~~ 130 (306)
T TIGR02716 61 SLTEFADYMFSPTP--KEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG-QKNFKGQVP-----YPPVTRED-NLYFEEIH 130 (306)
T ss_pred ecchhHHhhccCCc--cchhhhcCchHHHH-HHHHHHHHHhHHHHhcC-CcccccccC-----CCCCCHHH-HHhHHHHH
Confidence 99999985554433 11 122333322 12233578999999984 434432221 21222222 23344443
Q ss_pred -hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCC
Q 017495 189 -NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMF 260 (370)
Q Consensus 189 -~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~ 260 (370)
.......+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++++ +|++++.+|++
T Consensus 131 ~~~~~~~~~~l~~~~~-~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~ 209 (306)
T TIGR02716 131 RSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIY 209 (306)
T ss_pred HhcchhHHHHHHHHcC-CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCcc
Confidence 333334455666665 788899999999999999999999999999999998888876532 57999999999
Q ss_pred C-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-hh-cCCCccc
Q 017495 261 E-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-AQ-TTGGRER 337 (370)
Q Consensus 261 ~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~-~~~~~~~ 337 (370)
+ +.|.+|+|++.+++|+|+++.+.++|++++++|+|||+|+|.|.+.++... +. +....+..+. .. ..-...+
T Consensus 210 ~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T TIGR02716 210 KESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PN---FDYLSHYILGAGMPFSVLGFK 285 (306)
T ss_pred CCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-ch---hhHHHHHHHHcccccccccCC
Confidence 7 666679999999999999988999999999999999999999998765422 11 1111221110 00 0011234
Q ss_pred CHHHHHHHHHhCCCCcceEE
Q 017495 338 SKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~ 357 (370)
+.++|.++|+++||+.++++
T Consensus 286 ~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 286 EQARYKEILESLGYKDVTMV 305 (306)
T ss_pred CHHHHHHHHHHcCCCeeEec
Confidence 58999999999999988764
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=286.86 Aligned_cols=236 Identities=35% Similarity=0.656 Sum_probs=203.9
Q ss_pred ccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHH
Q 017495 108 ERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAM 187 (370)
Q Consensus 108 ~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m 187 (370)
+++|++|+.++.|+.+++ ..++..++.+...+.+++.|.+|.+++++|.++|+..+|.++|++++++++..+.|+++|
T Consensus 3 ~~~y~~t~~s~~ll~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m 80 (241)
T PF00891_consen 3 GDRYSLTPLSELLLSDHS--SPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAM 80 (241)
T ss_dssp TEEEEE-HHHHGGSTTTT--TTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred CCEEeChHHHHHHhCCCC--cCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence 589999999997776655 357777777766788999999999999999999999999889999999999999999999
Q ss_pred HhchHHHH-HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCC
Q 017495 188 SNHSALVM-NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 188 ~~~~~~~~-~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~ 266 (370)
...+.... ..+...++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+||+++.||+++++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence 99888777 67777777 99999999999999999999999999999999999999998888889999999999988889
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCC--cEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPEN--GKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++++|||+|+|+++..||++++++|+|| |+|+|.|.+.++....+........+|+.|+..+ +|+.||.+||++
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e~~~ 238 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEEWEA 238 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHHHHH
Confidence 9999999999999999999999999999999 9999999999887655432222357899999986 799999999999
Q ss_pred HHH
Q 017495 345 LAK 347 (370)
Q Consensus 345 ll~ 347 (370)
||+
T Consensus 239 ll~ 241 (241)
T PF00891_consen 239 LLK 241 (241)
T ss_dssp HHH
T ss_pred HhC
Confidence 985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7e-18 Score=147.43 Aligned_cols=155 Identities=20% Similarity=0.242 Sum_probs=120.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
..++.+|||||||||.++..+++..+..+++++|+ +.|++.+++. ..++|+.+|+.. |+|+. |+|++++.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFG 128 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeeh
Confidence 44689999999999999999999999999999998 9999988764 238999999999 99976 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-Hhhhc---C--CC-----------ccc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-MLAQT---T--GG-----------RER 337 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~---~--~~-----------~~~ 337 (370)
|++++|. .++|++++|+|||||++++.|...+..+... .....+... .+-.. . +. ...
T Consensus 129 lrnv~d~--~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~---~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p 203 (238)
T COG2226 129 LRNVTDI--DKALKEMYRVLKPGGRLLVLEFSKPDNPVLR---KAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFP 203 (238)
T ss_pred hhcCCCH--HHHHHHHHHhhcCCeEEEEEEcCCCCchhhH---HHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCC
Confidence 9999965 6899999999999999999999887653221 111111111 11110 0 01 124
Q ss_pred CHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
+.+++.++++++||+.+.......+..
T Consensus 204 ~~~~l~~~~~~~gf~~i~~~~~~~G~~ 230 (238)
T COG2226 204 DQEELKQMIEKAGFEEVRYENLTFGIV 230 (238)
T ss_pred CHHHHHHHHHhcCceEEeeEeeeeeeE
Confidence 789999999999999998766654444
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=148.99 Aligned_cols=155 Identities=20% Similarity=0.156 Sum_probs=115.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC--CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
..+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 5567899999999999999998875 5679999998 8998877532 468999999987 77754 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh-hhhH--Hh-hhcCC-----------Cc
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE-QDLF--ML-AQTTG-----------GR 335 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~-~d~~--~~-~~~~~-----------~~ 335 (370)
+.+++|++++. ..+|++++++|||||++++.|...++..... ....+ +... .. ..... ..
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~ 225 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTT---SMQEWMIDNVVVPVATGYGLAKEYEYLKSSINE 225 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHH---HHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHh
Confidence 99999999865 6899999999999999999998765531110 00000 0000 00 00000 22
Q ss_pred ccCHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
.++.+++.++++++||+.++......+..
T Consensus 226 f~s~~el~~ll~~aGF~~~~~~~~~~g~~ 254 (261)
T PLN02233 226 YLTGEELEKLALEAGFSSAKHYEISGGLM 254 (261)
T ss_pred cCCHHHHHHHHHHCCCCEEEEEEcCCCee
Confidence 46899999999999999999888765554
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-19 Score=158.69 Aligned_cols=162 Identities=23% Similarity=0.299 Sum_probs=81.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~ 273 (370)
..++.+|||+|||||.++..+++.. |+.+++++|+ +.+++.+++. .+|+++++|+.+ ++++. |+|++++
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 5567899999999999999999875 6789999998 9999988752 479999999998 88865 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh--hHHhh--hcCC-----------CcccC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD--LFMLA--QTTG-----------GRERS 338 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d--~~~~~--~~~~-----------~~~~t 338 (370)
.||+++|. .+.|++++++|||||+++|.|...+..+.-. ..+...+. +..+. .... ....+
T Consensus 125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~--~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~ 200 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNPLLR--ALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPS 200 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH--HHHHH--------------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCchhh--ceeeeeecccccccccccccccccccccccccccccc
Confidence 99999875 5789999999999999999999887641110 00000111 00000 0000 11237
Q ss_pred HHHHHHHHHhCCCCcceEEecCC-CeeEEEEeC
Q 017495 339 KKEYEALAKNSGFSGLEIVCCAY-NSWVMEFHK 370 (370)
Q Consensus 339 ~~e~~~ll~~aGf~~v~~~~~~~-~~~~~e~~k 370 (370)
.+++.++|+++||+.++..+... ..++..+.|
T Consensus 201 ~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 201 PEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp ---------------------------------
T ss_pred cccccccccccccccccccccccccccccccCC
Confidence 89999999999999999888754 444555544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-18 Score=151.86 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~v 274 (370)
.+..+|||||||+|..+..+++.+ |+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+..|+|++.++
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 466799999999999999999874 7899999999 8898877542 368999999987 5555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----------------cCCCccc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----------------TTGGRER 337 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----------------~~~~~~~ 337 (370)
+|++++++...+|++++++|+|||.+++.|.+.+++..... ....+.+... .......
T Consensus 132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 99999888889999999999999999999987755322110 0111111000 0012346
Q ss_pred CHHHHHHHHHhCCCCcceEEecCCCeeE
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCAYNSWV 365 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~~~~~~ 365 (370)
|.+++++++++|||+.++...-.....+
T Consensus 207 s~~~~~~~l~~aGF~~~~~~~~~~~~~~ 234 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVELWFQCFNFGS 234 (239)
T ss_pred CHHHHHHHHHHcCCchHHHHHHHHhHhH
Confidence 8999999999999998775443333333
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-17 Score=146.52 Aligned_cols=156 Identities=18% Similarity=0.242 Sum_probs=119.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~-- 266 (370)
...++..+. +++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++ ..++.++.+|+.+ ++|.+
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 345666665 7788999999999999999998765 679999998 888776654 2579999999987 66654
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+++|++.++...+|++++++|||||+|++.+......... ...... .... ......+.+++.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~-----~~~~~~--~~~~-~~~~~~~~~~~~~~l 190 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENW-----DEEFKA--YIKK-RKYTLIPIQEYGDLI 190 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCc-----HHHHHH--HHHh-cCCCCCCHHHHHHHH
Confidence 99999999988887677899999999999999999999876542111 011111 1111 123346899999999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||++++.....
T Consensus 191 ~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 191 KSCNFQNVVAKDIS 204 (263)
T ss_pred HHCCCCeeeEEeCc
Confidence 99999999987754
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=142.43 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=121.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+. ..+..+|||+|||+|.++..+++.+ |..+++++|+ +.+++.+++ .++++++.+|+.+ +++..
T Consensus 36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (231)
T TIGR02752 36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNS 114 (231)
T ss_pred HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCC
Confidence 3444454 6667899999999999999999886 6789999998 888776653 2578999999987 55543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh-hhhhHHhh---------------
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF-EQDLFMLA--------------- 329 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~--------------- 329 (370)
|+|++.+++|++++. .++|+++.++|+|||++++.+...+.... ...... .+...+-.
T Consensus 115 fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 189 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIPG---FKQLYFFYFKYIMPLFGKLFAKSYKEYSWL 189 (231)
T ss_pred ccEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCChH---HHHHHHHHHcChhHHhhHHhcCCHHHHHHH
Confidence 999999999998765 58999999999999999998876543210 000000 00000000
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
........+.+++.++|+++||+++++.... +..+++..+|
T Consensus 190 ~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 190 QESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0001123478999999999999999998886 6777888876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-17 Score=145.17 Aligned_cols=151 Identities=15% Similarity=0.168 Sum_probs=112.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhh--CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSR--YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~v 274 (370)
.+..+|||||||+|..+..+++. +|+.+++++|. +.+++.++++ .+++++.+|+.+ +.+..|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 46689999999999999998884 68999999998 9999887652 379999999987 5555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-------------hhcCCCcccCHHH
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-------------AQTTGGRERSKKE 341 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~~t~~e 341 (370)
+|++++++...++++++++|+|||.|++.|.+..++...... ....+.+.... .....-...+.++
T Consensus 135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~ 213 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVET 213 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHH
Confidence 999998888899999999999999999999876554222110 00001111000 0000011248899
Q ss_pred HHHHHHhCCCCcceEE
Q 017495 342 YEALAKNSGFSGLEIV 357 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~ 357 (370)
..++|++|||+.+...
T Consensus 214 ~~~~L~~aGF~~v~~~ 229 (247)
T PRK15451 214 HKARLHKAGFEHSELW 229 (247)
T ss_pred HHHHHHHcCchhHHHH
Confidence 9999999999987643
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=141.86 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=111.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCC-C-CEEEe
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPR-G-DAIFL 271 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~-~-D~i~~ 271 (370)
...++..+. ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. +++++.+|+.+..+. . |+|++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~ 95 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS 95 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence 345666666 66778999999999999999999999999999999 9999888763 689999998763232 3 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh---hhhhhH-HhhhcCCCcccCHHHHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV---FEQDLF-MLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~---~~~d~~-~~~~~~~~~~~t~~e~~~ll~ 347 (370)
..+||++++. ..+|++++++|+|||++++..+.....+......... .+.... ......+....+.+++.++|+
T Consensus 96 ~~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (255)
T PRK14103 96 NAALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLT 173 (255)
T ss_pred ehhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHH
Confidence 9999998865 6889999999999999998643211110000000000 000000 000001223468999999999
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
++||++..+
T Consensus 174 ~aGf~v~~~ 182 (255)
T PRK14103 174 DAGCKVDAW 182 (255)
T ss_pred hCCCeEEEE
Confidence 999985443
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=143.32 Aligned_cols=151 Identities=20% Similarity=0.169 Sum_probs=110.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.+ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 567899999999999999999987 779999998 7777765431 479999999987 66654 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC-C-ccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPEN-Q-ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~-~-~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+||+++. ..++++++++|||||+|+|.++........ . ........++....... .....+.++|.++++++||.
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~aGf~ 272 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAESLGLQ 272 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHCCCC
Confidence 9999865 689999999999999999998765332111 0 00011111111111110 11235899999999999999
Q ss_pred cceEEecC
Q 017495 353 GLEIVCCA 360 (370)
Q Consensus 353 ~v~~~~~~ 360 (370)
.+++....
T Consensus 273 ~v~~~d~s 280 (340)
T PLN02244 273 DIKTEDWS 280 (340)
T ss_pred eeEeeeCc
Confidence 99887654
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=139.09 Aligned_cols=139 Identities=24% Similarity=0.313 Sum_probs=109.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~ 279 (370)
+..+|||||||+|..+..+++.++..+++++|. +.+++.+++. .+++++.+|+.+ +++.+ |+|++..++|+++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~ 192 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP 192 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence 567999999999999999999888889999998 8888877653 578999999987 55543 9999999999998
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+. ..+|++++++|+|||++++.+...++.. ......+.++ ...+.+++.++|+++||+.+++...
T Consensus 193 d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~------~~r~~~~~~~-------~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 193 DP--QRGIKEAYRVLKIGGKACLIGPVHPTFW------LSRFFADVWM-------LFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred CH--HHHHHHHHHhcCCCcEEEEEEecCcchh------HHHHhhhhhc-------cCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 76 4789999999999999999876543310 0001111111 1247899999999999999998876
Q ss_pred C
Q 017495 360 A 360 (370)
Q Consensus 360 ~ 360 (370)
.
T Consensus 258 ~ 258 (340)
T PLN02490 258 G 258 (340)
T ss_pred C
Confidence 4
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-15 Score=131.28 Aligned_cols=168 Identities=18% Similarity=0.148 Sum_probs=120.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
.++..+. ..+..+|||||||+|.++..++..+| ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4444444 44568999999999999999999987 789999998 7777665542 468999999987 44433
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh----hhcCC-------
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML----AQTTG------- 333 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~------- 333 (370)
|+|++.+++|++++. ..+|+++.++|+|||++++.+...+.... .......+...++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSY 195 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHH
Confidence 999999999998764 68899999999999999999987654311 0000000000000 00001
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
...++.++|.++|+++||+.+++.... +-..++.++|
T Consensus 196 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 196 LAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 123478899999999999999999875 5556777765
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=129.72 Aligned_cols=146 Identities=22% Similarity=0.247 Sum_probs=110.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC------CeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC------IKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~------~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~- 266 (370)
.....++|||+||||..+..+++..+. .+++++|+ |++++.++++ .++.++++|..+ |+|..
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s 177 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDS 177 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCc
Confidence 335589999999999999999999877 78999998 9998876542 359999999999 99875
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc---CCC--------
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT---TGG-------- 334 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~-------- 334 (370)
|.|++.+-+.++++. .+.|++++|+|||||++.+.|+..-++.. ..+++..+.+..+... ..|
T Consensus 178 ~D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~~---l~~fy~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 178 FDAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENEP---LKWFYDQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred ceeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccHH---HHHHHHhhhhhhhchhhHhhhhhHhhhhhH
Confidence 999999999999976 58899999999999999999986654211 1111111111111000 001
Q ss_pred -----cccCHHHHHHHHHhCCCCcce
Q 017495 335 -----RERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 335 -----~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+..+.+++..+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 123789999999999999987
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=145.44 Aligned_cols=151 Identities=19% Similarity=0.238 Sum_probs=116.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-- 266 (370)
..+++.+. .++..+|||||||+|..+..+++.+ +.+++++|+ +.+++.+++. .++++..+|+.+ ++|..
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 44566555 6677899999999999999998876 779999998 7888776432 478999999987 56653
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+++|+++. ..+|++++++|+|||+|++.+.......... . .... .. ..+...++.+++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~---~---~~~~--~~-~~g~~~~~~~~~~~~l 402 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGTPSP---E---FAEY--IK-QRGYDLHDVQAYGQML 402 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCCcH---H---HHHH--HH-hcCCCCCCHHHHHHHH
Confidence 999999999999865 5899999999999999999998765421111 1 1111 11 1244567899999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+++.+...
T Consensus 403 ~~aGF~~i~~~d~ 415 (475)
T PLN02336 403 KDAGFDDVIAEDR 415 (475)
T ss_pred HHCCCeeeeeecc
Confidence 9999999876553
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=125.23 Aligned_cols=136 Identities=20% Similarity=0.147 Sum_probs=97.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC-C-CEEEecccccCCCh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR-G-DAIFLKWMLHGWTD 280 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh~~~d 280 (370)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... ..+. . |+|++..+|||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSH
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhccc
Confidence 45678999999999999999976533 9999998 777776 234444443333 2333 3 99999999999995
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-cCCCcccCHHHHHHHHHhCCCCcce
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-TTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
...+|+++++.|||||++++.++..... .........+... ..+...++.++|.++++++||++++
T Consensus 94 --~~~~l~~l~~~LkpgG~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 94 --PEEFLKELSRLLKPGGYLVISDPNRDDP-------SPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp --HHHHHHHHHHCEEEEEEEEEEEEBTTSH-------HHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEEcCCcch-------hhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 4799999999999999999999876421 0001111111110 0244667999999999999999875
|
... |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=125.81 Aligned_cols=165 Identities=18% Similarity=0.197 Sum_probs=119.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D 267 (370)
.++..+. ..+..+|||+|||+|..+..+++.+|. .+++++|. +.+++.+++. .+++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 3444443 446789999999999999999999987 78999998 7777665542 468999999987 55443 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh---c----C-C------
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ---T----T-G------ 333 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---~----~-~------ 333 (370)
+|++.+++|+.++ ...+|+++++.|+|||++++.+...+.... .....+..+... . . .
T Consensus 109 ~i~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (223)
T TIGR01934 109 AVTIAFGLRNVTD--IQKALREMYRVLKPGGRLVILEFSKPANAL------LKKFYKFYLKNVLPSIGGLISKNAEAYTY 180 (223)
T ss_pred EEEEeeeeCCccc--HHHHHHHHHHHcCCCcEEEEEEecCCCchh------hHHHHHHHHHHhhhhhhhhhcCCchhhHH
Confidence 9999999998775 468999999999999999999886543210 111111111000 0 0 0
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecCCCe-eEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCAYNS-WVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~-~~~e~~k 370 (370)
....+.++|.++|+++||+.+++.+...+. .+++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 181 LPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 112478899999999999999999987664 3666554
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-14 Score=134.05 Aligned_cols=144 Identities=15% Similarity=0.056 Sum_probs=104.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC-------CCCCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP-------SFPGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
...+|||||||+|.++..+++..+. +++++|. +.++..++ ...+++++.+|+.+ +.+.. |+|++..+||
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998665 5999997 55443211 12479999999877 55444 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|..+. ..+|+++++.|+|||.+++.+...+........ ..... . .|. ..-..++.+++.++|+++||+.+++
T Consensus 201 H~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~-p~~~y-~-~~~---~~~~lps~~~l~~~L~~aGF~~i~~ 272 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLV-PGDRY-A-KMR---NVYFIPSVPALKNWLERAGFKDVRI 272 (322)
T ss_pred ccCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccC-chhHH-h-cCc---cceeCCCHHHHHHHHHHcCCceEEE
Confidence 98765 688999999999999999877665543221100 00000 0 000 0112458999999999999999988
Q ss_pred Eec
Q 017495 357 VCC 359 (370)
Q Consensus 357 ~~~ 359 (370)
...
T Consensus 273 ~~~ 275 (322)
T PRK15068 273 VDV 275 (322)
T ss_pred EeC
Confidence 765
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.6e-14 Score=131.21 Aligned_cols=153 Identities=14% Similarity=0.021 Sum_probs=105.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-------CCCCCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-------PSFPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~~~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+. ..+..+|||||||+|.++..++...+. .++++|. +.++..+ ....++.+...++.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 3444444 345689999999999999998887653 7899997 6555432 123567888888765 33334
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..+|||++++ ..+|++++++|+|||.|++.+...+......... ... .-.|.. .....+.+++.++|
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p-~~r--y~k~~n---v~flpS~~~L~~~L 261 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP-KDR--YAKMKN---VYFIPSVSALKNWL 261 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCc-hHH--HHhccc---cccCCCHHHHHHHH
Confidence 999999999998866 6899999999999999999887664321111000 000 000100 11235889999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+.+++...
T Consensus 262 ~~aGF~~V~i~~~ 274 (314)
T TIGR00452 262 EKVGFENFRILDV 274 (314)
T ss_pred HHCCCeEEEEEec
Confidence 9999999987764
|
Known examples to date are restricted to the proteobacteria. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=128.78 Aligned_cols=136 Identities=19% Similarity=0.274 Sum_probs=106.4
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGW 278 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~ 278 (370)
.+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++ .++++++..|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999998 777776654 2578999999876 45444 999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
++. ..+|++++++|+|||++++.+...+...... .. .......+.++|.++++++||++++...
T Consensus 81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------~~------~~~~~~~s~~~~~~~l~~~Gf~~~~~~~ 144 (224)
T smart00828 81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSAIE--------HE------ETTSYLVTREEWAELLARNNLRVVEGVD 144 (224)
T ss_pred CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcccc--------cc------ccccccCCHHHHHHHHHHCCCeEEEeEE
Confidence 764 6899999999999999999987543210000 00 0012245789999999999999998877
Q ss_pred cC
Q 017495 359 CA 360 (370)
Q Consensus 359 ~~ 360 (370)
..
T Consensus 145 ~~ 146 (224)
T smart00828 145 AS 146 (224)
T ss_pred Cc
Confidence 64
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=124.39 Aligned_cols=139 Identities=14% Similarity=0.104 Sum_probs=104.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D 267 (370)
.+++.+. ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++. .++++...|+.+ +.+.. |
T Consensus 21 ~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD 97 (197)
T PRK11207 21 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD 97 (197)
T ss_pred HHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence 4455554 445689999999999999999985 568999998 8887766532 458888899876 44444 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++|++++++...++++++++|+|||++++.+....++...+. . .....+.+++.++++
T Consensus 98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~--------~--------~~~~~~~~el~~~~~ 161 (197)
T PRK11207 98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV--------G--------FPFAFKEGELRRYYE 161 (197)
T ss_pred EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCC--------C--------CCCccCHHHHHHHhC
Confidence 999999999988888899999999999999998877665443211000 0 011246888999887
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
||+++..
T Consensus 162 --~~~~~~~ 168 (197)
T PRK11207 162 --GWEMVKY 168 (197)
T ss_pred --CCeEEEe
Confidence 8987765
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=122.11 Aligned_cols=170 Identities=18% Similarity=0.175 Sum_probs=124.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCC--CCEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPR--GDAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~--~D~i~ 270 (370)
..+++..++ .....+|+|+|||+|..+..|++++|+..++++|. ++|++.++.. .+++|..+|+.+-.|+ .|+++
T Consensus 19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 456777777 78899999999999999999999999999999998 9999988764 7899999999986664 49999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh--hHHhhhcC----CCcccCHHHHHH
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD--LFMLAQTT----GGRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d--~~~~~~~~----~~~~~t~~e~~~ 344 (370)
.+.+||.++|. ..+|.++...|.|||.|.+.= |++...+....+...-+ .+-..... .....+...|-+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQm---PdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~ 172 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQM---PDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYE 172 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhCCCceEEEEC---CCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHH
Confidence 99999988865 689999999999999999843 33322221100000000 00000110 223458899999
Q ss_pred HHHhCCCCcceE-----EecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEI-----VCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~-----~~~~~~~~~~e~~k 370 (370)
+|...+=++.-+ +++++...|++++|
T Consensus 173 lLa~~~~rvDiW~T~Y~h~l~~a~aIvdWvk 203 (257)
T COG4106 173 LLAPLACRVDIWHTTYYHQLPGADAIVDWVK 203 (257)
T ss_pred HhCcccceeeeeeeeccccCCCccchhhhee
Confidence 999987554332 23357777888876
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-15 Score=137.11 Aligned_cols=145 Identities=11% Similarity=0.051 Sum_probs=104.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~-D~i~~~~vL 275 (370)
...+|||||||+|.++..+++ ++.+++++|. +.+++.++.+ .+++++.+|+.+ +.+. . |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 5679999998 8888877642 368899999876 4443 3 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC----CcccCHHHHHHHHHhCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG----GRERSKKEYEALAKNSGF 351 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~----~~~~t~~e~~~ll~~aGf 351 (370)
||++++ ..+|+.++++|||||.+++.+...... .+................+ .+.++++++.++|+++||
T Consensus 209 eHv~d~--~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf 282 (322)
T PLN02396 209 EHVANP--AEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASV 282 (322)
T ss_pred HhcCCH--HHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCC
Confidence 999976 589999999999999999987643210 0000000000001001111 235689999999999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
+++++..+
T Consensus 283 ~i~~~~G~ 290 (322)
T PLN02396 283 DVKEMAGF 290 (322)
T ss_pred eEEEEeee
Confidence 99987554
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=127.59 Aligned_cols=156 Identities=21% Similarity=0.168 Sum_probs=127.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
.+.+++.+. +.+..+|||||||-|.++...+++| +++++++++ ++..+.+++. +++++...|..+..+..
T Consensus 61 ~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 61 LDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 566777777 9999999999999999999999999 899999998 7766665542 47999999987644346
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|-|++..+++|+..+....+++++++.|+|||++++.....++.... ...++..-..+++|..++.+++.+..
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~i~~~~ 211 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-------RFPDFIDKYIFPGGELPSISEILELA 211 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-------cchHHHHHhCCCCCcCCCHHHHHHHH
Confidence 99999999999999889999999999999999999999887764221 12222233335799999999999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
.++||++..+...
T Consensus 212 ~~~~~~v~~~~~~ 224 (283)
T COG2230 212 SEAGFVVLDVESL 224 (283)
T ss_pred HhcCcEEehHhhh
Confidence 9999999876654
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-15 Score=117.04 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=82.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccC-CC-CCCCC-CEEEecc-c
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDM-FE-NVPRG-DAIFLKW-M 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~-~~-~~p~~-D~i~~~~-v 274 (370)
+..+|||||||+|.++..+++.+|+.+++++|. |.+++.+++ .++++++.+|+ .. ..++. |+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999998 888887654 27899999999 33 33334 9999999 6
Q ss_pred ccCCCh-hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTD-EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d-~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+|++.+ ++..++|+++++.|+|||+|+|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 665543 577899999999999999999965
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-14 Score=125.25 Aligned_cols=157 Identities=19% Similarity=0.257 Sum_probs=111.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-- 266 (370)
.+...+. ..+..+|||+|||+|.++..+++.+ |..+++++|. +..++.+++. .++++...|+.. +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3444455 6778899999999999999999988 7889999998 7777665442 568899999876 55543
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc-chhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS-SHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++.+++|++++. ..++++++++|+|||++++.+............ .......... . .......+..+|.++
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~ 163 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFW--S-DHFADPWLGRRLPGL 163 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHH--H-hcCCCCcHHHHHHHH
Confidence 999999999998865 688999999999999999988643211000000 0111111111 1 112234456789999
Q ss_pred HHhCCCCcceEEec
Q 017495 346 AKNSGFSGLEIVCC 359 (370)
Q Consensus 346 l~~aGf~~v~~~~~ 359 (370)
|+++||+.+++...
T Consensus 164 l~~aGf~~~~~~~~ 177 (241)
T PRK08317 164 FREAGLTDIEVEPY 177 (241)
T ss_pred HHHcCCCceeEEEE
Confidence 99999998876543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=129.30 Aligned_cols=146 Identities=23% Similarity=0.291 Sum_probs=110.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~ 273 (370)
..+..+|||||||+|..+..+++.. +..+++++|. +.+++.+++. ++++++.+|+.+ +++.+ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 5577899999999999888777664 5668999998 8888877642 578999999887 66553 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
++|++++. ..+|++++++|||||+|++.+........ .....+..++.. ..+...+.++|.++|+++||..
T Consensus 155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~e~~~~l~~aGf~~ 225 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGELP------EEIRNDAELYAG-CVAGALQEEEYLAMLAEAGFVD 225 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCCC------HHHHHhHHHHhc-cccCCCCHHHHHHHHHHCCCCc
Confidence 99987754 57899999999999999999987543211 111122222211 1344568899999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 226 v~i~~~ 231 (272)
T PRK11873 226 ITIQPK 231 (272)
T ss_pred eEEEec
Confidence 877543
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=129.29 Aligned_cols=160 Identities=15% Similarity=0.076 Sum_probs=110.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~ 266 (370)
++.+++.+. .++..+|||||||.|.++..+++++ +++++++.+ +...+.+++ .+++++...|+.+..+..
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 556777776 8899999999999999999999998 789999987 655554432 257999999987632344
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|.|++..++.|+..++...+++++.+.|+|||++++...+..+...... .....++..-..+++|...+.+++...+
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~---~~~~~~~i~kyiFPgg~lps~~~~~~~~ 205 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAE---RRSSSDFIRKYIFPGGYLPSLSEILRAA 205 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHC---TTCCCHHHHHHTSTTS---BHHHHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhh---cCCCceEEEEeeCCCCCCCCHHHHHHHH
Confidence 9999999999999888899999999999999999998877655311000 0000122222234688889999999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||++..+...
T Consensus 206 ~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 206 EDAGLEVEDVENL 218 (273)
T ss_dssp HHTT-EEEEEEE-
T ss_pred hcCCEEEEEEEEc
Confidence 9999999888765
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=128.05 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=106.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--CCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--NVPR- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~~p~- 265 (370)
.++..++ .++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555443 45679999999999999999985 578999998 8888877642 468999999865 2333
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchhhhh-hhhHH---hhhcCCCcccCH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHIVFE-QDLFM---LAQTTGGRERSK 339 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~-~d~~~---~~~~~~~~~~t~ 339 (370)
. |+|++..+||+++++ ..+|+++.++|||||+|++............. ....... ..+.. .... .....++
T Consensus 112 ~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 188 (255)
T PRK11036 112 PVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLS-PDYPLDP 188 (255)
T ss_pred CCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCC-CCCCCCH
Confidence 3 999999999998866 58899999999999999987654321000000 0000000 00000 0000 1123578
Q ss_pred HHHHHHHHhCCCCcceEEec
Q 017495 340 KEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~~ 359 (370)
+++.++|+++||+++.+.-+
T Consensus 189 ~~l~~~l~~aGf~~~~~~gi 208 (255)
T PRK11036 189 EQVYQWLEEAGWQIMGKTGV 208 (255)
T ss_pred HHHHHHHHHCCCeEeeeeeE
Confidence 99999999999999876554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.2e-13 Score=125.00 Aligned_cols=106 Identities=25% Similarity=0.395 Sum_probs=90.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCC-CC-CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVP-RG-DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p-~~-D~i~ 270 (370)
...++..++ ..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .++.++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 446666665 67788999999999999999999999999999998 8888887764 578999999876333 23 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+..++|++++. ..+|++++++|+|||++++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCCCcEEEEE
Confidence 99999988765 58999999999999999985
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=137.91 Aligned_cols=142 Identities=21% Similarity=0.305 Sum_probs=105.7
Q ss_pred CChhhhccCCchHHHHHHHHHHhchHH--HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHH
Q 017495 167 MTQFEYLGTDPRFNGVFNEAMSNHSAL--VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVL 243 (370)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~ 243 (370)
..+|+++...++...+|...|...... ........++ +.+..+|||||||+|..+..+++.+|+.+++++|+ +.++
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 356777777666666666555432221 1111122233 55678999999999999999999999999999999 7788
Q ss_pred HhCCCC-----CCCeEEeccCCC-C--CCCC--CEEEecccccCC-----------ChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 244 ANAPSF-----PGVEHVGGDMFE-N--VPRG--DAIFLKWMLHGW-----------TDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 244 ~~a~~~-----~rv~~~~~D~~~-~--~p~~--D~i~~~~vLh~~-----------~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+.+++. .+++++.+|+.+ + ++.+ |+|+++.++|+| ++++..++|++++++|||||++++
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII 535 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII 535 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence 776542 357888899876 3 4433 999999999976 245778999999999999999999
Q ss_pred EeecCCC
Q 017495 303 VESILPL 309 (370)
Q Consensus 303 ~e~~~~~ 309 (370)
.|.+.++
T Consensus 536 ~D~v~~E 542 (677)
T PRK06922 536 RDGIMTE 542 (677)
T ss_pred EeCccCC
Confidence 9976654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=119.78 Aligned_cols=156 Identities=12% Similarity=0.026 Sum_probs=107.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
+..+|||||||||..+..+.+.+ +.+++++|+ +.+++.+++. ..++.+|+.+ ++++. |+|++.++||++++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~- 126 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI- 126 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH-
Confidence 46799999999999999999887 679999998 9999988754 3567889887 77664 999999999998865
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-------------cccCHHHHHHHHHhC
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-------------RERSKKEYEALAKNS 349 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------------~~~t~~e~~~ll~~a 349 (370)
.++|++++++||| .+++.|...++.........+....-+..+....++ ...+.+++.++++++
T Consensus 127 -~~~l~e~~RvLkp--~~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~ 203 (226)
T PRK05785 127 -EKVIAEFTRVSRK--QVGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKY 203 (226)
T ss_pred -HHHHHHHHHHhcC--ceEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6899999999999 344566655442110000001110111111110112 123789999999998
Q ss_pred CCCcceEEecCCCe-eEEEEeC
Q 017495 350 GFSGLEIVCCAYNS-WVMEFHK 370 (370)
Q Consensus 350 Gf~~v~~~~~~~~~-~~~e~~k 370 (370)
| ..++......+. .+..++|
T Consensus 204 ~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 204 A-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred h-CceEEEEccccEEEEEEEee
Confidence 4 767777776444 4666554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-13 Score=118.97 Aligned_cols=145 Identities=21% Similarity=0.120 Sum_probs=102.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~-~-D~i~~~~ 273 (370)
.++..+|||||||+|.++..|++. .++.+++++|+ +.+++.+++. .++++...+... +.+. . |+|+++.
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 356789999999999999888764 45679999998 9999887754 456776665544 3333 3 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----cCC-----CcccCHHHHH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----TTG-----GRERSKKEYE 343 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~-----~~~~t~~e~~ 343 (370)
+|||+++++...+|++++++++ |.+++.+...+.. .+........... ... ...++.+++.
T Consensus 138 ~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~ 208 (232)
T PRK06202 138 FLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-------AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELA 208 (232)
T ss_pred eeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-------HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHHH
Confidence 9999998888899999999998 6777776655421 0000011100000 001 1245899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
+++++ ||++....+.
T Consensus 209 ~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 209 ALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHhhC-CCeEEeccce
Confidence 99999 9998877765
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.6e-15 Score=121.25 Aligned_cols=139 Identities=23% Similarity=0.283 Sum_probs=100.0
Q ss_pred CCCCeEEEEcCcccHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C--CCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMIT-SRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N--VPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~--~p~~-D~i~~~~ 273 (370)
++..+|||+|||+|.++..++ +.+|+.+++++|. +.+++.++. .++++|..+|+.+ + ++.. |+|++..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 356899999999999999999 5578999999998 999988775 2579999999998 4 3334 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
++|++++. ..+|+++.+.|+|||.+++.+....+........... +....+.....+. ..++|..+|++||
T Consensus 82 ~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 82 VLHHFPDP--EKVLKNIIRLLKPGGILIISDPNHNDELPEQLEELMN--LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp TGGGTSHH--HHHHHHHHHHEEEEEEEEEEEEEHSHHHHHHHHHHHH--HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred chhhccCH--HHHHHHHHHHcCCCcEEEEEECChHHHHHHHHHHHHH--HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99998866 5889999999999999999998732210000000000 0011111111111 6788999999998
|
... |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=120.66 Aligned_cols=101 Identities=22% Similarity=0.253 Sum_probs=83.5
Q ss_pred CCCCCeEEEEcCcccH----HHHHHHhhCC-----CCeEEEeeh-hhHHHhCCCC-------------------------
Q 017495 205 FDGLKVLVDVGGGIGV----TLGMITSRYP-----CIKGISFDL-PHVLANAPSF------------------------- 249 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~------------------------- 249 (370)
..+..+|+|+|||+|. +++.+.+.++ +.++++.|+ +.+++.|++.
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 3456899999999996 4566666655 578999999 9999877652
Q ss_pred --------CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 --------PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 --------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+|+|..+|+.+ +.+.+ |+|+|.++|||+++++..+++++++++|+|||+|++...
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 268999999998 33333 999999999999988888999999999999999998544
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-13 Score=117.57 Aligned_cols=140 Identities=12% Similarity=0.052 Sum_probs=101.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~ 268 (370)
.+++.+. ..++.+|||+|||+|..+..++++ +.+++++|. +.+++.+++. -.+.+...|+.. +.+.. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4444444 445689999999999999999985 568999998 8888765432 136777778765 33444 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
|++..++|++++++...++++++++|+|||++++.+....+...... +.....+++++.++|.
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~----------------~~~~~~~~~el~~~f~- 160 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM----------------PFSFTFKEDELRQYYA- 160 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC----------------CcCccCCHHHHHHHhC-
Confidence 99999999998888889999999999999998887765432211000 0112357889998886
Q ss_pred CCCCcceEE
Q 017495 349 SGFSGLEIV 357 (370)
Q Consensus 349 aGf~~v~~~ 357 (370)
+|+++...
T Consensus 161 -~~~~~~~~ 168 (195)
T TIGR00477 161 -DWELLKYN 168 (195)
T ss_pred -CCeEEEee
Confidence 47777655
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.7e-13 Score=118.93 Aligned_cols=137 Identities=25% Similarity=0.233 Sum_probs=104.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC--CEEEecccccCCCh
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d 280 (370)
.+.+|||||||+|.++..+++.+|..+++++|. +.++..++.. ++++++.+|+.+ +.+.. |+|++.+++|+..+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~ 113 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD 113 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence 457999999999999999999999999999998 7777666543 478999999987 54543 99999999998765
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
. ..+|++++++|+|||.+++.++..... ....... .. .+....+.++|.++++.+ |+.+.+..
T Consensus 114 ~--~~~l~~~~~~L~~~G~l~~~~~~~~~~---------~~~~~~~--~~-~~~~~~~~~~~~~~l~~~-f~~~~~~~ 176 (240)
T TIGR02072 114 L--SQALSELARVLKPGGLLAFSTFGPGTL---------HELRQSF--GQ-HGLRYLSLDELKALLKNS-FELLTLEE 176 (240)
T ss_pred H--HHHHHHHHHHcCCCcEEEEEeCCccCH---------HHHHHHH--HH-hccCCCCHHHHHHHHHHh-cCCcEEEE
Confidence 4 689999999999999999987643321 1111111 00 134456889999999998 88776543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.9e-14 Score=106.32 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=75.3
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHH
Q 017495 212 VDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCL 284 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~ 284 (370)
||+|||+|..+..+++. +..+++++|. +.+++.+++. .++.++.+|+.+ +++.. |+|++.+++|+++ +..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~--~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLE--DPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSS--HHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeecc--CHH
Confidence 89999999999999998 8899999998 7777776643 456799999988 77765 9999999999984 557
Q ss_pred HHHHHHHHhCCCCcEEEE
Q 017495 285 KLLKNCWEALPENGKVII 302 (370)
Q Consensus 285 ~iL~~~~~~L~pgG~lli 302 (370)
+++++++++|||||+++|
T Consensus 78 ~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHcCcCeEEeC
Confidence 999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.8e-13 Score=116.00 Aligned_cols=157 Identities=14% Similarity=0.025 Sum_probs=106.4
Q ss_pred HHHHHHhhcC-CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC
Q 017495 195 MNKILDVYRG-FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~ 265 (370)
...++..+.. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .++.+..+|+.+....
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~ 119 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGE 119 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCC
Confidence 3344443331 345789999999999999999875 458999998 8888877642 3789999998763333
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~ 343 (370)
.|+|++..+++|+++++...+++++.+.+++++.+.+.. .. . .......+...... ....-..++.+++.
T Consensus 120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~----~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (219)
T TIGR02021 120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAP----KT---A-WLAFLKMIGELFPGSSRATSAYLHPMTDLE 191 (219)
T ss_pred cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECC----Cc---h-HHHHHHHHHhhCcCcccccceEEecHHHHH
Confidence 499999999999988778899999999998765554421 11 0 00011111100000 00112345899999
Q ss_pred HHHHhCCCCcceEEecCC
Q 017495 344 ALAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~~ 361 (370)
++++++||+++.......
T Consensus 192 ~~l~~~Gf~v~~~~~~~~ 209 (219)
T TIGR02021 192 RALGELGWKIVREGLVST 209 (219)
T ss_pred HHHHHcCceeeeeecccc
Confidence 999999999998876543
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=116.44 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=105.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i 269 (370)
...++..++ ..+..+|||+|||+|.++..+.+. +.+++++|+ +.+++.+++. ..+.++.+|+.. +++.. |+|
T Consensus 31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 445555555 445689999999999999888763 578999998 8898887764 346789999987 66654 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHHHHHH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYEALAK 347 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~~ll~ 347 (370)
++...+|+.++. ..+|++++++|+|||.+++..+....- ......+... ........+.++|.+++.
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~---------~el~~~~~~~~~~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSL---------PELHQAWQAVDERPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCch---------HHHHHHHHHhccCCccccCCCHHHHHHHHH
Confidence 999999976654 689999999999999999987654321 0111111100 001233468899999999
Q ss_pred hCCCCc
Q 017495 348 NSGFSG 353 (370)
Q Consensus 348 ~aGf~~ 353 (370)
..|++.
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 988864
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-12 Score=108.70 Aligned_cols=158 Identities=19% Similarity=0.137 Sum_probs=117.4
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH----HHhCCC--CCCC-eEEeccCCCC-CC---------CC-CEEE
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV----LANAPS--FPGV-EHVGGDMFEN-VP---------RG-DAIF 270 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~----~~~a~~--~~rv-~~~~~D~~~~-~p---------~~-D~i~ 270 (370)
+|||||+|||..+.++++.+|.+...--|. +.. .....+ .+++ .-+..|+.++ ++ .. |.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999999999998865554 222 111111 1222 2345565552 22 13 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+.+++|-.+-..+..+++.+.++|+|||.|++..+...++.-.+ .-...+|...-..-+....|..+++.++.+++|
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~G 184 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIEDVEALAAAHG 184 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999876642221 122344444433224566889999999999999
Q ss_pred CCcceEEecCCCeeEEEEeC
Q 017495 351 FSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 351 f~~v~~~~~~~~~~~~e~~k 370 (370)
|+.++.+.++...-+++++|
T Consensus 185 L~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 185 LELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred CccCcccccCCCCeEEEEeC
Confidence 99999999998888888876
|
The function of this family is unknown. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-12 Score=112.05 Aligned_cols=143 Identities=13% Similarity=0.090 Sum_probs=98.2
Q ss_pred hhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHH----hCCCCCCCeEEeccCCCC-----CCCC-CEE
Q 017495 201 VYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLA----NAPSFPGVEHVGGDMFEN-----VPRG-DAI 269 (370)
Q Consensus 201 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~----~a~~~~rv~~~~~D~~~~-----~p~~-D~i 269 (370)
.++ .++..+|||+|||+|.++..+++..+..+++++|. +.+++ .+++..++.++.+|...+ .++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 344 67788999999999999999999887668999998 76655 444446799999998653 1233 888
Q ss_pred EecccccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 270 FLKWMLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 270 ~~~~vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
++ +.+++ +...+|+++++.|||||+|+|.=...+-+ +.. ... +..++..+++++
T Consensus 146 ~~-----d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d--------------~~~-----~~~-~~~~~~~~~l~~ 200 (226)
T PRK04266 146 YQ-----DVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID--------------VTK-----DPK-EIFKEEIRKLEE 200 (226)
T ss_pred EE-----CCCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc--------------CcC-----CHH-HHHHHHHHHHHH
Confidence 73 34333 33467899999999999999942111100 000 000 112345699999
Q ss_pred CCCCcceEEecCC---CeeEEEEe
Q 017495 349 SGFSGLEIVCCAY---NSWVMEFH 369 (370)
Q Consensus 349 aGf~~v~~~~~~~---~~~~~e~~ 369 (370)
+||+.+++..... ++..+.++
T Consensus 201 aGF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 201 GGFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred cCCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999888753 36655554
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=112.76 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=96.6
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEe
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFL 271 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~ 271 (370)
..+. ..+..+|||||||+|.++..+++.+|+.+++++|. +.+++.++++ .+++++.+|.....+.. |+|++
T Consensus 25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~ 103 (187)
T PRK08287 25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI 103 (187)
T ss_pred HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence 4444 56778999999999999999999999999999998 8887776542 46889999876544444 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
....++ ...+++.+.+.|+|||++++.....+ +.+++.+++++.||
T Consensus 104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~-----------------------------~~~~~~~~l~~~g~ 149 (187)
T PRK08287 104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE-----------------------------NLHSALAHLEKCGV 149 (187)
T ss_pred CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh-----------------------------hHHHHHHHHHHCCC
Confidence 776543 34689999999999999988443211 24577789999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
+.++++..
T Consensus 150 ~~~~~~~~ 157 (187)
T PRK08287 150 SELDCVQL 157 (187)
T ss_pred CcceEEEE
Confidence 88776554
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=3e-14 Score=109.29 Aligned_cols=87 Identities=23% Similarity=0.360 Sum_probs=59.3
Q ss_pred EEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CC---CeEEeccCCCCCC-CC-CEEEecccccCCC
Q 017495 212 VDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PG---VEHVGGDMFENVP-RG-DAIFLKWMLHGWT 279 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~r---v~~~~~D~~~~~p-~~-D~i~~~~vLh~~~ 279 (370)
||||||+|.++..+++.+|..+++++|+ +.+++.++++ .. +++...|.....+ +. |+|++.++|||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999998 9999877764 12 3333344333222 23 9999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 017495 280 DEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~l 300 (370)
+...+|+++++.|+|||+|
T Consensus 81 --~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TSS-EE
T ss_pred --hHHHHHHHHHHHcCCCCCC
Confidence 4579999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=113.92 Aligned_cols=103 Identities=16% Similarity=0.339 Sum_probs=89.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCCC--CEEEecccccCCCh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d 280 (370)
..+..+|||||||+|..+..+++.+|+.+++++|+ +.+++.+++. .++++..+|+.++++.. |+|++..+|||+++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 44677999999999999999999889999999998 8999988763 67889999988866553 99999999999988
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++..++++++++++ +++++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~--~~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCS--NRYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence 88889999999998 5789998886544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.5e-13 Score=117.55 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------C----CCeEEeccCCCCCCCCCEEEeccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------P----GVEHVGGDMFENVPRGDAIFLKWM 274 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~D~~~~~p~~D~i~~~~v 274 (370)
.++|||||||+|.++..|++. +..++++|. +++++.|+++ . |+++.+.|.....+..|+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 378999999999999999985 478999998 8888888753 2 366777777665555699999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhhhcCC----CcccCHHHHHHHHHhC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLAQTTG----GRERSKKEYEALAKNS 349 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~----~~~~t~~e~~~ll~~a 349 (370)
+||..|+ ..+++.+.+.|+|+|.|+|.+....-..- ....+++ ........| .+..++++...+++.+
T Consensus 168 leHV~dp--~~~l~~l~~~lkP~G~lfittinrt~lS~-----~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~ 240 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLKPNGRLFITTINRTILSF-----AGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNAN 240 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhCCCCceEeeehhhhHHHh-----hccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhc
Confidence 9998766 68999999999999999998875532100 0111111 111111112 2345899999999999
Q ss_pred CCCcceEEec
Q 017495 350 GFSGLEIVCC 359 (370)
Q Consensus 350 Gf~~v~~~~~ 359 (370)
|+.+..+.-.
T Consensus 241 ~~~v~~v~G~ 250 (282)
T KOG1270|consen 241 GAQVNDVVGE 250 (282)
T ss_pred Ccchhhhhcc
Confidence 9988776543
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.8e-12 Score=121.71 Aligned_cols=155 Identities=12% Similarity=0.001 Sum_probs=113.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCCCCCCCCEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFENVPRGDAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~~~p~~D~i~ 270 (370)
...+++.+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ..+++...|+.+.....|+|+
T Consensus 156 ~~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Iv 233 (383)
T PRK11705 156 LDLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIV 233 (383)
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEE
Confidence 345556665 6778899999999999999998876 579999998 8888877643 247778888754312239999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+..+++|.++.+...+++.++++|||||++++.+...+...... ..+++- .. ++++...+.+++.+.++ .|
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~-----~~~i~~--yi-fp~g~lps~~~i~~~~~-~~ 304 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNV-----DPWINK--YI-FPNGCLPSVRQIAQASE-GL 304 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCC-----CCCcee--ee-cCCCcCCCHHHHHHHHH-CC
Confidence 99999999877778999999999999999999887654321111 011111 11 25777788899888866 58
Q ss_pred CCcceEEecC
Q 017495 351 FSGLEIVCCA 360 (370)
Q Consensus 351 f~~v~~~~~~ 360 (370)
|.+.++...+
T Consensus 305 ~~v~d~~~~~ 314 (383)
T PRK11705 305 FVMEDWHNFG 314 (383)
T ss_pred cEEEEEecCh
Confidence 9888776543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=127.72 Aligned_cols=144 Identities=21% Similarity=0.293 Sum_probs=109.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC---CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE---NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~---~~p~~ 266 (370)
...++..++ ..+..+|||||||+|.++..+++.+ .+++++|. +.+++.++. ..+++++.+|+.. ++|..
T Consensus 26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 345555555 4456799999999999999999874 47899998 888876542 2568999999964 34543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++||+++++...+|+++++.|+|||++++.|.+........ . . ......++...|.+
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~------~------~--~~~~~~~~~~~~~~ 168 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK------R------K--NNPTHYREPRFYTK 168 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc------c------c--CCCCeecChHHHHH
Confidence 999999999999998888999999999999999999997654321100 0 0 01223356889999
Q ss_pred HHHhCCCCcce
Q 017495 345 LAKNSGFSGLE 355 (370)
Q Consensus 345 ll~~aGf~~v~ 355 (370)
++.++||....
T Consensus 169 ~f~~~~~~~~~ 179 (475)
T PLN02336 169 VFKECHTRDED 179 (475)
T ss_pred HHHHheeccCC
Confidence 99999998764
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-12 Score=108.76 Aligned_cols=177 Identities=17% Similarity=0.172 Sum_probs=117.6
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCC
Q 017495 180 NGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGV 252 (370)
Q Consensus 180 ~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv 252 (370)
...|++-|.++....+..+-. +.+.+....||+||||||..-..+ .--|..++|.+|. |.+.+.+.+ ...+
T Consensus 50 t~~yne~~~~ykrelFs~i~~-~~gk~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~ 127 (252)
T KOG4300|consen 50 TSIYNEIADSYKRELFSGIYY-FLGKSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQV 127 (252)
T ss_pred HHHHHHHHHHHHHHHHhhhHH-HhcccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcce
Confidence 345666676665544444432 322445678899999999876433 2337889999997 777665543 2456
Q ss_pred e-EEeccCCC-C-CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH
Q 017495 253 E-HVGGDMFE-N-VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM 327 (370)
Q Consensus 253 ~-~~~~D~~~-~-~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~ 327 (370)
. |+.++..+ + .+++ |+|++..+|+-..+ ..+.|++++++|+|||+++++|++..+...-. ...+...+...
T Consensus 128 ~~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n--~i~q~v~ep~~ 203 (252)
T KOG4300|consen 128 ERFVVADGENLPQLADGSYDTVVCTLVLCSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWN--RILQQVAEPLW 203 (252)
T ss_pred EEEEeechhcCcccccCCeeeEEEEEEEeccCC--HHHHHHHHHHhcCCCcEEEEEecccccchHHH--HHHHHHhchhh
Confidence 5 88888877 4 4554 99999999987554 47999999999999999999999876532110 11122222211
Q ss_pred hhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCee
Q 017495 328 LAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSW 364 (370)
Q Consensus 328 ~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~ 364 (370)
... ..|...+.+.| +.|++|-|+.++..+...+..
T Consensus 204 ~~~-~dGC~ltrd~~-e~Leda~f~~~~~kr~~~~tt 238 (252)
T KOG4300|consen 204 HLE-SDGCVLTRDTG-ELLEDAEFSIDSCKRFNFGTT 238 (252)
T ss_pred hee-ccceEEehhHH-HHhhhcccccchhhcccCCce
Confidence 111 24555676666 667889999998777654444
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.3e-12 Score=118.16 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=99.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~ 277 (370)
.++.+|||||||+|..+..+++. +.+++++|. +.+++.+++. -++++...|+.. ..++. |+|++..+||+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMF 196 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhh
Confidence 34569999999999999999884 579999998 7877765432 257888888876 34444 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++++...+|++++++|+|||+++++.....+....+ .+.....+.+++.++++. |+++...
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~~~~ 258 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIVKYN 258 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEEEEe
Confidence 9888889999999999999999888766543321100 011223568899999874 8887764
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.3e-13 Score=112.84 Aligned_cols=146 Identities=18% Similarity=0.215 Sum_probs=107.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC-----CCCC--CEEEecc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN-----VPRG--DAIFLKW 273 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~-----~p~~--D~i~~~~ 273 (370)
.+||+||||.|.....+++..|+ +++..+|. |..++..++. .++.....|+..+ .+.+ |+|++.+
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 89999998 9888887764 4566666666552 2233 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc---ccCHHHHHHHHHhCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR---ERSKKEYEALAKNSG 350 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~---~~t~~e~~~ll~~aG 350 (370)
+|...+++....++++++++|||||.|++.|....+-..... .....++....+.. .|. ..+.+++.+++.+||
T Consensus 153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF--~~~~~i~~nfYVRg-DGT~~YfF~~eeL~~~f~~ag 229 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF--KKGQCISENFYVRG-DGTRAYFFTEEELDELFTKAG 229 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc--cCCceeecceEEcc-CCceeeeccHHHHHHHHHhcc
Confidence 999999999999999999999999999999987654200000 00011111111111 222 348999999999999
Q ss_pred CCcceEE
Q 017495 351 FSGLEIV 357 (370)
Q Consensus 351 f~~v~~~ 357 (370)
|..++..
T Consensus 230 f~~~~~~ 236 (264)
T KOG2361|consen 230 FEEVQLE 236 (264)
T ss_pred cchhccc
Confidence 9988753
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=107.63 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=103.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEEEecccccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~ 279 (370)
+..+|||+|||+|.++..+.+..+ +++++|+ |.+++.++++ -+++++.+|..+..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999776 8999998 8888776642 35788899987633334 9999988877665
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 280 DE-------------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 280 d~-------------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++ -...+|+.+.++|+|||++++.+.... ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------------------~~~ 147 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------------------GEP 147 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------------------ChH
Confidence 32 135789999999999999999775321 145
Q ss_pred HHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 341 EYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++.++++++||+...+...+...--+++||
T Consensus 148 ~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 148 DTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred HHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 788999999999988888777766666665
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.4e-12 Score=111.22 Aligned_cols=144 Identities=15% Similarity=0.062 Sum_probs=99.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCCCEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRGDAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~D~i~~~~vLh 276 (370)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. +++.+..+|+.......|+|++..++|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhh
Confidence 3456799999999999999999864 46999998 8887776542 478999999433322239999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-----cCCCcccCHHHHHHHHHhCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-----TTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~t~~e~~~ll~~aGf 351 (370)
|+++++...+++++.+.+++++.+.+ .. .. . ...........+ .......+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~-~~---~~---~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTF-AP---YT---P----LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEE-CC---cc---H----HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 99988888999999998754443332 11 11 0 001111110000 012234578999999999999
Q ss_pred CcceEEecCC
Q 017495 352 SGLEIVCCAY 361 (370)
Q Consensus 352 ~~v~~~~~~~ 361 (370)
++..+.+...
T Consensus 208 ~~~~~~~~~~ 217 (230)
T PRK07580 208 KVVRTERISS 217 (230)
T ss_pred ceEeeeeccc
Confidence 9999887653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-13 Score=104.15 Aligned_cols=88 Identities=27% Similarity=0.424 Sum_probs=73.1
Q ss_pred EEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEec-ccccC
Q 017495 211 LVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLK-WMLHG 277 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~-~vLh~ 277 (370)
|||+|||+|..+..+.+.+ |..+++++|+ +.+++.+++. .++++++.|+.+ ++..+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999987 5689999998 8888877643 478999999987 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCc
Q 017495 278 WTDEHCLKLLKNCWEALPENG 298 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG 298 (370)
+++++..++|+++.++|+|||
T Consensus 81 ~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999998
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.6e-13 Score=116.74 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=102.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CC--CeEEeccCCC-CCC--CCCEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PG--VEHVGGDMFE-NVP--RGDAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~r--v~~~~~D~~~-~~p--~~D~i~~~~vLh~ 277 (370)
...+|||||||.|.++..+++.. .+++++|. +..++.++.+ +. +++.+...++ ... ..|+|+|-.+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 56899999999999999999964 89999998 8888888754 22 3455555554 222 2399999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhhhcCC-----CcccCHHHHHHHHHhCCC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLAQTTG-----GRERSKKEYEALAKNSGF 351 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~-----~~~~t~~e~~~ll~~aGf 351 (370)
.++++ .+++.|.+.+||||.+++.+....-. ......+. -..+.+.+. .+...++|+..++.++|+
T Consensus 137 v~dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~ 208 (243)
T COG2227 137 VPDPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANL 208 (243)
T ss_pred cCCHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCc
Confidence 99884 69999999999999999988764321 01111111 001111122 234578999999999999
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
.+.....+
T Consensus 209 ~~~~~~g~ 216 (243)
T COG2227 209 KIIDRKGL 216 (243)
T ss_pred eEEeecce
Confidence 88776554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.7e-12 Score=116.83 Aligned_cols=97 Identities=18% Similarity=0.278 Sum_probs=79.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-----C--CCeEEeccCCCC--CCC-----C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-----P--GVEHVGGDMFEN--VPR-----G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-----~--rv~~~~~D~~~~--~p~-----~-D~i 269 (370)
+..+|||+|||+|..+..|++.++ ..+++++|+ +++++.+++. + +|.++++|+.+. .+. . .++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 557899999999999999999987 689999998 8887666432 2 356789999862 222 2 356
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...++++++++...+|++++++|+|||.++|.
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 6678999999999999999999999999999973
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=114.07 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=84.5
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCCCCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~~p~-~ 266 (370)
++..++ .....+|||+|||+|..+..+++++|..+++++|. +.+++.++++ .++++...|..+..+. .
T Consensus 220 lL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~ 298 (378)
T PRK15001 220 FMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR 298 (378)
T ss_pred HHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCC
Confidence 455555 33346999999999999999999999999999998 7888777642 2678999998875543 3
Q ss_pred -CEEEeccccc---CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 -DAIFLKWMLH---GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 -D~i~~~~vLh---~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|+++--+| .+++....++++.++++|+|||.|+++-
T Consensus 299 fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 299 FNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred EEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 9999965544 3555666799999999999999999974
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-12 Score=113.39 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=80.2
Q ss_pred CCCCeEEEEcCcccHHHH--HHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC--CC-CEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLG--MITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP--RG-DAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~--~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p--~~-D~i~~ 271 (370)
.++.+|+|||||.|.++. .+...+|+.+++++|. +++++.+++. ++++|+.+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 377999999999884433 3445689999999998 8888876642 579999999987332 23 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. +||+|+.++..++|+++++.|+|||.|++.-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 9999977777899999999999999999854
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=107.04 Aligned_cols=135 Identities=24% Similarity=0.294 Sum_probs=96.7
Q ss_pred hhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCCCCCC--CEEEecc
Q 017495 201 VYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFENVPRG--DAIFLKW 273 (370)
Q Consensus 201 ~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~~p~~--D~i~~~~ 273 (370)
.++ -....+++|+|||.|.++..|+.+. -+.+++|. +..++.+++ .++|+++..|+.+..|++ |+|+++.
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 355 5566899999999999999999875 46888998 888888764 378999999998877765 9999999
Q ss_pred cccCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 274 MLHGWTD-EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 274 vLh~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
++|++++ ++...+++++.++|+|||.|++...... .... + |.....+.+.++|++. |.
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~------------~c~~-----w---gh~~ga~tv~~~~~~~-~~ 173 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA------------NCRR-----W---GHAAGAETVLEMLQEH-LT 173 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH------------HHHH-----T---T-S--HHHHHHHHHHH-SE
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC------------cccc-----c---CcccchHHHHHHHHHH-hh
Confidence 9999986 5788999999999999999999776310 1111 1 1222467788888874 66
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
.++.+.+
T Consensus 174 ~~~~~~~ 180 (201)
T PF05401_consen 174 EVERVEC 180 (201)
T ss_dssp EEEEEEE
T ss_pred heeEEEE
Confidence 6665555
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=109.77 Aligned_cols=146 Identities=14% Similarity=0.061 Sum_probs=98.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-C-CC-CC-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-N-VP-RG-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~-~p-~~-D~i~~~~v 274 (370)
..+..+|||||||+|.++..+.+. ..+++++|. +..++.+++. .++++...|+.+ + .+ .. |+|++.++
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 346789999999999999988875 467899998 7777665532 346777777665 2 12 23 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc----CCCcccCHHHHHHHHHhCC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT----TGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~~t~~e~~~ll~~aG 350 (370)
+++.++. ..+|+++.+.|+|||.+++....... .................. ......+.++|.++++++|
T Consensus 124 l~~~~~~--~~~l~~~~~~L~~gG~l~v~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 197 (233)
T PRK05134 124 LEHVPDP--ASFVRACAKLVKPGGLVFFSTLNRNL----KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAG 197 (233)
T ss_pred hhccCCH--HHHHHHHHHHcCCCcEEEEEecCCCh----HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCC
Confidence 9998765 57899999999999999987653211 000000000000000000 0123458899999999999
Q ss_pred CCcceEEe
Q 017495 351 FSGLEIVC 358 (370)
Q Consensus 351 f~~v~~~~ 358 (370)
|+++....
T Consensus 198 f~~v~~~~ 205 (233)
T PRK05134 198 LEVQDITG 205 (233)
T ss_pred CeEeeeee
Confidence 99987754
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.1e-11 Score=111.14 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=97.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCCCCCCCCEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFENVPRGDAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~~~p~~D~i~~~~v 274 (370)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.++++ .++.|...|+.+.....|+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999985 578999998 8888766542 2467888887542122399999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC------CcccCHHHHHHHHHh
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG------GRERSKKEYEALAKN 348 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~ 348 (370)
|||++++....+++.+.+ +.+||. +|.. .+.. .....+...--.+ ++ ....+.++++++|++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~g~l-iIs~--~p~~-------~~~~~l~~~g~~~-~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAEKRL-IISF--APKT-------LYYDILKRIGELF-PGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcCCEE-EEEe--CCcc-------hHHHHHHHHHhhc-CCCCcCceeeeCCHHHHHHHHHH
Confidence 999998777778888875 455554 4422 1211 0000111000001 11 123479999999999
Q ss_pred CCCCcceEEecCCCe---eEEEEe
Q 017495 349 SGFSGLEIVCCAYNS---WVMEFH 369 (370)
Q Consensus 349 aGf~~v~~~~~~~~~---~~~e~~ 369 (370)
+||+++...-....+ .++|++
T Consensus 290 AGf~v~~~~~~~~~~y~~~l~~~~ 313 (315)
T PLN02585 290 AGWKVARREMTATQFYFSRLLEAV 313 (315)
T ss_pred CCCEEEEEEEeecceeHHhhhhhc
Confidence 999987655443322 355554
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.1e-10 Score=101.83 Aligned_cols=132 Identities=14% Similarity=0.068 Sum_probs=98.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------------CCCCCeEEeccCCCCCC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------------SFPGVEHVGGDMFENVP-- 264 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------------~~~rv~~~~~D~~~~~p-- 264 (370)
.+..+|||+|||.|..+..|++ -+..++++|+ |..++.+. +..+|+++++|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~--~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAE--QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHh--CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 4567999999999999999998 4778999998 77777631 12468999999998322
Q ss_pred -C-CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHH
Q 017495 265 -R-GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 265 -~-~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 342 (370)
. .|.|+-..++||++.+....+++.+.++|+|||++++.....+..... . .-...+.+++
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~-----------------g-pp~~~~~~eL 172 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMA-----------------G-PPFSVSPAEV 172 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCC-----------------C-cCCCCCHHHH
Confidence 2 399999999999999988999999999999999988876654321100 0 0113578889
Q ss_pred HHHHHhCCCCcceEEe
Q 017495 343 EALAKNSGFSGLEIVC 358 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~ 358 (370)
.++|.. +|.+..+..
T Consensus 173 ~~~f~~-~~~i~~~~~ 187 (213)
T TIGR03840 173 EALYGG-HYEIELLES 187 (213)
T ss_pred HHHhcC-CceEEEEee
Confidence 888864 455554443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-11 Score=108.23 Aligned_cols=141 Identities=16% Similarity=0.072 Sum_probs=96.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC------CCCC-CCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA------PSFP-GVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a------~~~~-rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
.+++|||||||.|.++..++.+.+. .++++|. +...-.. ...+ .+.....-+.. +.... |+|++-.|||
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 4679999999999999999987543 5889995 3322221 1112 22333222222 22233 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc--chhhhhhhhHHhhhcCC-CcccCHHHHHHHHHhCCCCc
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS--SHIVFEQDLFMLAQTTG-GRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~-~~~~t~~e~~~ll~~aGf~~ 353 (370)
|..++ ...|+.+++.|+|||.|++-..+.+.+...... ..+. .| .+ -...|...+..||+.+||+.
T Consensus 194 Hrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa-----~m----~nv~FiPs~~~L~~wl~r~gF~~ 262 (315)
T PF08003_consen 194 HRRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYA-----KM----RNVWFIPSVAALKNWLERAGFKD 262 (315)
T ss_pred ccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCccc-----CC----CceEEeCCHHHHHHHHHHcCCce
Confidence 98877 789999999999999999988877654221100 0000 01 11 12458999999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
++++..
T Consensus 263 v~~v~~ 268 (315)
T PF08003_consen 263 VRCVDV 268 (315)
T ss_pred EEEecC
Confidence 998775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=103.07 Aligned_cols=91 Identities=21% Similarity=0.158 Sum_probs=72.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCC-CCEEEecccccCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPR-GDAIFLKWMLHGW 278 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~-~D~i~~~~vLh~~ 278 (370)
..+|||||||+|..+..++...|+.+++++|. +.+++.+++ .++++++.+|+.+ .... .|+|++.. +++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999998889999999998 776665442 2469999999977 2222 39998866 553
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...+++.+++.|+|||++++..
T Consensus 121 ----~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 121 ----LNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ----HHHHHHHHHHhcCCCCEEEEEc
Confidence 2367888999999999999853
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=108.55 Aligned_cols=107 Identities=20% Similarity=0.255 Sum_probs=83.4
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEEE
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAIF 270 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i~ 270 (370)
++..++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++. -..+++..|.....++. |+|+
T Consensus 188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv 266 (342)
T PRK09489 188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII 266 (342)
T ss_pred HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence 334444 23346899999999999999999999999999998 7888777642 23567788887654444 9999
Q ss_pred ecccccCC---ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 271 LKWMLHGW---TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 271 ~~~vLh~~---~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++..+|+. ..+....+++.+.+.|+|||.|+|+-.
T Consensus 267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 99888863 234567999999999999999998654
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-11 Score=105.93 Aligned_cols=137 Identities=23% Similarity=0.277 Sum_probs=95.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCC-CeEEeccCCCCCCC--C-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPG-VEHVGGDMFENVPR--G-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~r-v~~~~~D~~~~~p~--~-D~i~~~~vLh 276 (370)
+..+.||.|+|.|..+..++... --++..+|. +..++.+++ ..+ .++.+.-+.+-.|+ . |+|++.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 46799999999999999876633 235667776 777777663 223 34444444443343 3 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|++|++..++|++|+++|+|+|.|+|=|.+...+. ..+|- ..+.-.|+.+.|+++|++||++++..
T Consensus 134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D~-----~DsSvTRs~~~~~~lF~~AGl~~v~~ 199 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFDE-----EDSSVTRSDEHFRELFKQAGLRLVKE 199 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEET-----TTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccCC-----ccCeeecCHHHHHHHHHHcCCEEEEe
Confidence 99999999999999999999999999999876531 01221 12455689999999999999999975
Q ss_pred Ee
Q 017495 357 VC 358 (370)
Q Consensus 357 ~~ 358 (370)
..
T Consensus 200 ~~ 201 (218)
T PF05891_consen 200 EK 201 (218)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=99.79 Aligned_cols=133 Identities=14% Similarity=0.071 Sum_probs=98.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------------------CCCCeEEeccCCCCCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------------------FPGVEHVGGDMFENVPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~D~~~~~p~ 265 (370)
..+..+|||+|||.|..+..|++ .+..++++|+ +..++.+.. ..+|++..+|+++..+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~--~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAE--QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHh--CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 34567999999999999999998 5789999998 777775311 14688999999983222
Q ss_pred ---C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 266 ---G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 266 ---~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
. |+|+-..++|+++.+....+++.+.++|+|||.++++....++.... . .-...+.++
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~-----------------g-Pp~~~~~~e 174 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELA-----------------G-PPFSVSDEE 174 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCC-----------------C-CCCCCCHHH
Confidence 2 99999999999999999999999999999999766655544322100 0 011357899
Q ss_pred HHHHHHhCCCCcceEEe
Q 017495 342 YEALAKNSGFSGLEIVC 358 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~ 358 (370)
+.+++.. +|.+..+..
T Consensus 175 l~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 175 VEALYAG-CFEIELLER 190 (218)
T ss_pred HHHHhcC-CceEEEeee
Confidence 9998863 366665544
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.9e-11 Score=100.51 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=76.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
++..+|||||||+|..+..++...|+.+++++|. +.+++.+++. ++++++.+|+.+ +.... |+|++..+ .
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-~ 122 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-A 122 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc-c
Confidence 3478999999999999999999999999999998 8888766542 459999999887 33223 99998753 1
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
....+++.+++.|+|||++++.+
T Consensus 123 -----~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 123 -----SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -----CHHHHHHHHHHhcCCCeEEEEEe
Confidence 24578999999999999999875
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-11 Score=101.83 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=82.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCC-CCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~-~~p~~-D~ 268 (370)
.++..++ .-++.++||+|||.|..+..|+++ +..++.+|. +..++.+.+ .-.|+....|+.+ .+++. |+
T Consensus 21 ~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~ 97 (192)
T PF03848_consen 21 EVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDF 97 (192)
T ss_dssp HHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEE
T ss_pred HHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCE
Confidence 4555555 446789999999999999999994 678999997 656654432 2348889999987 55555 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|++..++++++.+...++++++.+.++|||++++...+..
T Consensus 98 I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 98 IVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp EEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred EEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 9999999999999889999999999999999999776543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.1e-11 Score=105.97 Aligned_cols=142 Identities=11% Similarity=0.029 Sum_probs=98.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC--CC-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP--RG-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p--~~-D~i~~~~vL 275 (370)
...+|||+|||+|.++..+++.. .+++++|. +.+++.++.. .++++...|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 46799999999999999888754 45889998 7776665432 257888888765 222 33 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh-hhcC-----CCcccCHHHHHHHHHhC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML-AQTT-----GGRERSKKEYEALAKNS 349 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-----~~~~~t~~e~~~ll~~a 349 (370)
|+..+. ..+|+++++.|+|||.+++.....+.. . .........+. .... .....+.++|.++++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLKPGGILFFSTINRTPK---S---YLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCH--HHHHHHHHHhcCCCcEEEEEecCCCch---H---HHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 998765 589999999999999999876532110 0 00000000000 0000 11234788999999999
Q ss_pred CCCcceEEe
Q 017495 350 GFSGLEIVC 358 (370)
Q Consensus 350 Gf~~v~~~~ 358 (370)
||+++++..
T Consensus 195 G~~i~~~~~ 203 (224)
T TIGR01983 195 GLRVKDVKG 203 (224)
T ss_pred CCeeeeeee
Confidence 999988764
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.7e-10 Score=99.57 Aligned_cols=139 Identities=14% Similarity=0.037 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hh----HHHhCCCCCCCeEEeccCCCCC-----CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PH----VLANAPSFPGVEHVGGDMFENV-----PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~----~~~~a~~~~rv~~~~~D~~~~~-----p~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++... .-+++.+|+ +. +++.+....+|.++..|+..+. .+. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 56778999999999999999999863 458999997 53 5566655578999999986532 123 999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
... + ++...++.++++.|||||+|+|.-....-+. .+....+-.+|. ++|+++||+
T Consensus 210 va~---p-dq~~il~~na~r~LKpGG~~vI~ika~~id~-------------------g~~pe~~f~~ev-~~L~~~GF~ 265 (293)
T PTZ00146 210 VAQ---P-DQARIVALNAQYFLKNGGHFIISIKANCIDS-------------------TAKPEVVFASEV-QKLKKEGLK 265 (293)
T ss_pred CCC---c-chHHHHHHHHHHhccCCCEEEEEEecccccc-------------------CCCHHHHHHHHH-HHHHHcCCc
Confidence 641 2 3455677889999999999999422111100 000001101344 889999999
Q ss_pred cceEEecC---CCeeEEE
Q 017495 353 GLEIVCCA---YNSWVME 367 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e 367 (370)
.++.+.+. ..++++.
T Consensus 266 ~~e~v~L~Py~~~h~~v~ 283 (293)
T PTZ00146 266 PKEQLTLEPFERDHAVVI 283 (293)
T ss_pred eEEEEecCCccCCcEEEE
Confidence 88887764 4444444
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=91.35 Aligned_cols=100 Identities=21% Similarity=0.265 Sum_probs=77.7
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC---CCCC-
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN---VPRG- 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~---~p~~- 266 (370)
++..+. ..+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++. ..+++++.+|+... .+..
T Consensus 11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (124)
T TIGR02469 11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP 89 (124)
T ss_pred HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence 344444 55567999999999999999999999999999998 777776543 24688888887641 2233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|+|++....+ ...++++.+++.|+|||+|++.
T Consensus 90 D~v~~~~~~~-----~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 90 DRVFIGGSGG-----LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred CEEEECCcch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence 9999876543 3358999999999999999985
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=102.41 Aligned_cols=124 Identities=23% Similarity=0.280 Sum_probs=93.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC--CEEEeccc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG--DAIFLKWM--- 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~--D~i~~~~v--- 274 (370)
...+|||+|||+|.++..+++.+|..+++++|. +.+++.++.. ++++++.+|+.+..+.. |+|+++--
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 446999999999999999999999999999998 8888776542 46899999998755433 99988422
Q ss_pred ---ccCCChhH------------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 275 ---LHGWTDEH------------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 275 ---Lh~~~d~~------------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++.+..+. ...+++++.+.|+|||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~---------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG---------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------------------
Confidence 22222111 23789999999999999987321
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
....+++.++|+++||+.++++..-
T Consensus 219 --~~~~~~~~~~l~~~gf~~v~~~~d~ 243 (251)
T TIGR03534 219 --YDQGEAVRALFEAAGFADVETRKDL 243 (251)
T ss_pred --ccHHHHHHHHHHhCCCCceEEEeCC
Confidence 0124678999999999998877653
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-11 Score=98.66 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=87.7
Q ss_pred EEeeh-hhHHHhCCCC---------CCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 235 ISFDL-PHVLANAPSF---------PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 235 ~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+++|. +.+++.++++ .+++++.+|+.+ +.+.. |+|++.+++|++++. ..+|++++++|||||+|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEE
Confidence 36787 8888776421 368999999988 66653 999999999999855 689999999999999999
Q ss_pred EEeecCCCCCCCCccchhhhh-hhhHHhhhcCC-----------CcccCHHHHHHHHHhCCCCcceEEecCCCee-EEEE
Q 017495 302 IVESILPLVPENQASSHIVFE-QDLFMLAQTTG-----------GRERSKKEYEALAKNSGFSGLEIVCCAYNSW-VMEF 368 (370)
Q Consensus 302 i~e~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~-----------~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~-~~e~ 368 (370)
|.|...++............. .-+........ ....+.+++.++|+++||+.++......+.. +...
T Consensus 79 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 158 (160)
T PLN02232 79 ILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA 158 (160)
T ss_pred EEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence 999976543111000000000 00000000000 1235899999999999999998888764433 4433
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-10 Score=93.57 Aligned_cols=143 Identities=18% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~~~ 279 (370)
++..+|||+|||.|.++..|.+. .++++.++++ ++-+..+.+ ..+.++++|+.+ .+|.. |.|+++.+|.++.
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-cCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence 46799999999999999888885 6899999987 655554443 368999999987 46654 9999999999977
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCC----------CCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPL----------VPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~----------~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
.+ ..+|+++.++ |.+.++.-+.... +..+-.......| ..+++-...|..++++++++.
T Consensus 90 ~P--~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~W------YdTPNih~~Ti~DFe~lc~~~ 158 (193)
T PF07021_consen 90 RP--DEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEW------YDTPNIHLCTIKDFEDLCREL 158 (193)
T ss_pred HH--HHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcc------cCCCCcccccHHHHHHHHHHC
Confidence 55 5778887666 5566654332110 0000000000111 113455566999999999999
Q ss_pred CCCcceEEecCC
Q 017495 350 GFSGLEIVCCAY 361 (370)
Q Consensus 350 Gf~~v~~~~~~~ 361 (370)
|+++++.....+
T Consensus 159 ~i~I~~~~~~~~ 170 (193)
T PF07021_consen 159 GIRIEERVFLDG 170 (193)
T ss_pred CCEEEEEEEEcC
Confidence 999999887753
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-10 Score=97.29 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCC-C-CEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPR-G-DAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~-~-D~i~~~~vLh~~~ 279 (370)
++..+|||||||+|.++..+++. ....++++|. +.+++.++. .+++++.+|+.+ +.+. . |+|++.++|||++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~ 89 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATR 89 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCc
Confidence 35679999999999999888765 4567899998 777776654 358889999865 2333 3 9999999999987
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-----cchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-----SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
+. ..+|+++.+.+++ +++.-+.......... .......+..... ...+....+.+++.++++++||+++
T Consensus 90 d~--~~~l~e~~r~~~~---~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ll~~~Gf~v~ 163 (194)
T TIGR02081 90 NP--EEILDEMLRVGRH---AIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWY-NTPNIHFCTIADFEDLCGELNLRIL 163 (194)
T ss_pred CH--HHHHHHHHHhCCe---EEEEcCChhHHHHHHHHHhCCccccCCCCCcccc-CCCCcccCcHHHHHHHHHHCCCEEE
Confidence 65 5778888877553 3332111100000000 0000000000000 0012345689999999999999998
Q ss_pred eEEec
Q 017495 355 EIVCC 359 (370)
Q Consensus 355 ~~~~~ 359 (370)
.....
T Consensus 164 ~~~~~ 168 (194)
T TIGR02081 164 DRAAF 168 (194)
T ss_pred EEEEe
Confidence 87665
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-11 Score=102.02 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=76.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccC-CC-C--CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDM-FE-N--VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~-~~-~--~p~~--D~i~~~~ 273 (370)
+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++ ..+++++.+|+ .. + ++.+ |+|++.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999998 888876653 25789999998 43 3 4433 9998865
Q ss_pred cccCCC------hhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLHGWT------DEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh~~~------d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...... ......+|++++++|+|||.|++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 442211 1113578999999999999999864
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.3e-10 Score=96.29 Aligned_cols=107 Identities=16% Similarity=0.158 Sum_probs=79.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p~ 265 (370)
.++...+.-+++..+|||||||+|.++..+++.. +..+++++|+..+. ...+++++.+|+.+. .+.
T Consensus 40 ~~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 40 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred HHHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 3444444424667899999999999999999986 45689999984432 235699999999873 333
Q ss_pred -C-CEEEecccccCCChhH---------HHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 -G-DAIFLKWMLHGWTDEH---------CLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 -~-D~i~~~~vLh~~~d~~---------~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++....|....+. ...+|+.+.++|+|||+|++..+.
T Consensus 116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 3 9999977666543221 246899999999999999996543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=92.84 Aligned_cols=134 Identities=20% Similarity=0.237 Sum_probs=94.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CC-CeEEeccCCCCCCC-C-CEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PG-VEHVGGDMFENVPR-G-DAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~D~~~~~p~-~-D~i~~~~v 274 (370)
.+..+|||+|||+|.++..+++. +.+++++|. +.+++.+++. ++ +.++.+|+.+..++ . |+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999987 678999998 8887766432 22 88999998885554 3 99987654
Q ss_pred ccCCC-------------------hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 275 LHGWT-------------------DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 275 Lh~~~-------------------d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
++... ......+++++.++|+|||.+++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~---------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL---------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc----------------------------
Confidence 33211 1224578999999999999998754211
Q ss_pred ccCHHHHHHHHHhCCCCcceEEecC---CCeeEEEEeC
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCCA---YNSWVMEFHK 370 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~~---~~~~~~e~~k 370 (370)
...+++.++++++||++..+.... ....+++.+|
T Consensus 152 -~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (188)
T PRK14968 152 -TGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELVK 188 (188)
T ss_pred -CCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEeC
Confidence 123568899999999988765442 2333555443
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=97.39 Aligned_cols=99 Identities=26% Similarity=0.332 Sum_probs=79.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
...+|||+|||+|..+..+++.+|+.+++.+|. +.+++.++++ ..++++..|.++..+. . |+|+++-=+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 567999999999999999999999999999998 8888877542 2388999999986663 3 99999877765
Q ss_pred CCh---hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 WTD---EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ~~d---~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
-.+ +-..++++.+.+.|+|||.|+++-.
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 443 2357999999999999999987544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=99.50 Aligned_cols=135 Identities=21% Similarity=0.242 Sum_probs=96.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecc--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKW-- 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~-- 273 (370)
..+..+|||+|||+|..+..++..+|..+++++|. +.+++.++++ .++.++.+|++++.+. . |+|+++-
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 44667999999999999999999999999999998 7777766542 4799999999875543 3 9998741
Q ss_pred ----cccCCCh------------------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 274 ----MLHGWTD------------------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 274 ----vLh~~~d------------------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
.++...+ +....+++++.+.|+|||++++. . ..
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~--g~---------------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I--GY---------------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E--Cc----------------------
Confidence 1111111 12357899999999999999882 1 00
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEec-CCCeeEEEEe
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCC-AYNSWVMEFH 369 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~-~~~~~~~e~~ 369 (370)
...+++.+++++.||+.++++.. .+...++.+.
T Consensus 241 -----~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 -----DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred -----hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 11356889999999997777553 2333344443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-09 Score=91.07 Aligned_cols=159 Identities=18% Similarity=0.179 Sum_probs=100.9
Q ss_pred hhccCCchHHHHHHHHHH----hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhC
Q 017495 171 EYLGTDPRFNGVFNEAMS----NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA 246 (370)
Q Consensus 171 ~~~~~~~~~~~~~~~~m~----~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a 246 (370)
+.+.++|+....|+.+.. .|....+..+++.+...++...|.|+|||.+.++..+. ...++.-+|+-..
T Consensus 32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---- 104 (219)
T PF05148_consen 32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---- 104 (219)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH-----S---EEEEESS-S----
T ss_pred HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc---cCceEEEeeccCC----
Confidence 344556666666666544 44445677777777644456799999999999886653 2357888897221
Q ss_pred CCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh
Q 017495 247 PSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ 323 (370)
Q Consensus 247 ~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 323 (370)
+-.+...|+.. |.+.. |+++++-.|.. .+...+|+++.|.|||||.|.|.|-...
T Consensus 105 ----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~SR--------------- 162 (219)
T PF05148_consen 105 ----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKSR--------------- 162 (219)
T ss_dssp ----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGGG---------------
T ss_pred ----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEeccc---------------
Confidence 23577899977 77765 99999888865 3568999999999999999999996431
Q ss_pred hhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 324 DLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 324 d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.-..+++.+.++..||+............++++.|
T Consensus 163 ------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K 197 (219)
T PF05148_consen 163 ------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKK 197 (219)
T ss_dssp -------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE
T ss_pred ------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEE
Confidence 01467888999999999988665556666777665
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-09 Score=92.58 Aligned_cols=155 Identities=17% Similarity=0.150 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCC------CCCC-eEEeccCCCC------CCCCCEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPS------FPGV-EHVGGDMFEN------VPRGDAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~------~~rv-~~~~~D~~~~------~p~~D~i 269 (370)
..+.+||||.||+|.+....+..+|. .++...|. |.-++..++ ...+ +|..+|.++. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 46789999999999999999999998 67888897 666665543 2444 9999999982 2333999
Q ss_pred EecccccCCChhHH-HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-----cccCHHHHH
Q 017495 270 FLKWMLHGWTDEHC-LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-----RERSKKEYE 343 (370)
Q Consensus 270 ~~~~vLh~~~d~~~-~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~~t~~e~~ 343 (370)
+.+-+...++|.+. ...|+.+++++.|||+|+....-..+. .. .+.. .+..+.+| +.||..|+.
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ-------le--~IAr-~LtsHr~g~~WvMRrRsq~EmD 283 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ-------LE--MIAR-VLTSHRDGKAWVMRRRSQAEMD 283 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc-------hH--HHHH-HHhcccCCCceEEEecCHHHHH
Confidence 99999999999774 457999999999999999855332221 00 1111 11111222 247999999
Q ss_pred HHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 344 ALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
+|++.|||..++..-.. +.++|..++|
T Consensus 284 ~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 284 QLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999877644333 5566666554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=89.65 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=81.8
Q ss_pred HHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCCCCE
Q 017495 199 LDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPRGDA 268 (370)
Q Consensus 199 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~~D~ 268 (370)
+..+. ..+..+++|||||+|..+...+...|..+++.+|. ++.++..+++ +++.++.+|..+. .|..|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 34455 77889999999999999999998899999999997 7777665542 7899999998873 333499
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|++.-.- ....+|+.+...|+|||+|++.-..
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9987662 3458999999999999999985443
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.9e-09 Score=96.70 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=75.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEec------
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLK------ 272 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~------ 272 (370)
.+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|++++.+. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6999999999999999999999999999998 8888776642 3599999999886654 3 999884
Q ss_pred -------ccccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 273 -------WMLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 273 -------~vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.++++-|. +....+++.+.+.|+|||++++
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23333221 1356899999999999998876
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.1e-09 Score=92.94 Aligned_cols=108 Identities=19% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~ 268 (370)
-+++.++ .....+|||+|||.|.++..+++.+|..+++.+|. ...++.++++ .+..+...|..++.... |.
T Consensus 149 lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~ 227 (300)
T COG2813 149 LLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDL 227 (300)
T ss_pred HHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccE
Confidence 4566666 44455999999999999999999999999999998 7778887764 22357788888755544 99
Q ss_pred EEecccccCCC---hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLKWMLHGWT---DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vLh~~~---d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+++==+|.-- ..-..++++.+.+.|++||.|.|+-.
T Consensus 228 IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 228 IISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred EEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 99988888632 22234899999999999999999665
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-10 Score=97.65 Aligned_cols=98 Identities=18% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C---CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N---VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~---~p~~--D~i~~~~ 273 (370)
...+|||||||+|.++..+++++|+..++++|. +.+++.+++ ..+++++.+|+.+ . .+.+ |.|++.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999998 777776643 2579999999975 1 3432 8887764
Q ss_pred cccCCChhH-------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHGWTDEH-------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
-.+ |+... ...+++.++++|||||.|++...
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td 133 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD 133 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence 332 22111 14789999999999999988653
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-09 Score=96.47 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=75.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW--- 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~--- 273 (370)
+..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457999999999999999999999999999998 8888877642 4689999999875554 3 9999840
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 274 ----------MLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 274 ----------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+++.+. +....+++.+.+.|+|||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122111 1236789999999999999886
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=94.92 Aligned_cols=99 Identities=16% Similarity=0.126 Sum_probs=75.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-- 265 (370)
.+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.++++ ++++++.+|+.+..+.
T Consensus 63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 3444444 55678999999999999999988764 568999998 8877766542 3589999999874332
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++...+++++ +.+.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 2 9999998887655 35678999999998843
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.1e-09 Score=99.64 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCC---eEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEecccccCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCI---KGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGW 278 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~ 278 (370)
...+|||||||+|.++..+++.+|.. .++++|+ +.+++.+++. .++.+..+|..+ +++.+ |+|++...-
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~~--- 161 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYAP--- 161 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecCC---
Confidence 45789999999999999999887753 6899998 8888877653 678999999887 66654 999875431
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
..+++++++|+|||+|+++.+
T Consensus 162 ------~~~~e~~rvLkpgG~li~~~p 182 (272)
T PRK11088 162 ------CKAEELARVVKPGGIVITVTP 182 (272)
T ss_pred ------CCHHHHHhhccCCCEEEEEeC
Confidence 236789999999999999764
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-09 Score=89.43 Aligned_cols=158 Identities=19% Similarity=0.185 Sum_probs=113.0
Q ss_pred hhhccCCchHHHHHHHHHHhchH----HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHh
Q 017495 170 FEYLGTDPRFNGVFNEAMSNHSA----LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLAN 245 (370)
Q Consensus 170 ~~~~~~~~~~~~~~~~~m~~~~~----~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~ 245 (370)
++.+..+|+....|+.+..+... ..+..+++.+..-+....|.|+|||-+.++. .-..++.-+|+-.+
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a~--- 210 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVAV--- 210 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccceeeeeeecC---
Confidence 44455677777777777665333 3466677766644567899999999998775 12346777887322
Q ss_pred CCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 246 APSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 246 a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
+-+++..|+.. |.+.. |+++++-.|.. .+...+++.++++|+|||.++|.|....
T Consensus 211 -----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~SR-------------- 268 (325)
T KOG3045|consen 211 -----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKSR-------------- 268 (325)
T ss_pred -----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhhh--------------
Confidence 45678889988 66654 99988877764 3567999999999999999999886321
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..+...+.+.|...||.+....-....+.++++.|
T Consensus 269 -------------f~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 -------------FSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred -------------cccHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11344588899999999887766666777777765
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.1e-09 Score=95.55 Aligned_cols=118 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C----CCeEEeccCCCCCCCCCEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P----GVEHVGGDMFENVPRGDAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~----rv~~~~~D~~~~~p~~D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++..+ .+++++|. |.+++.++++ . ++.+..+|. ..|+|+++..
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 3578999999999999988776543 46999998 8888877653 1 223322221 2399887532
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
.+....+++.+.+.|+|||++++...... ..+++.+.+++.||++++..
T Consensus 189 --~~~~~~l~~~~~~~LkpgG~lilsgi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 189 --ANPLLELAPDLARLLKPGGRLILSGILEE-----------------------------QADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred --HHHHHHHHHHHHHhcCCCcEEEEEECcHh-----------------------------hHHHHHHHHHHCCCEEEEEE
Confidence 23456789999999999999998654321 24578889999999998877
Q ss_pred ecCCCe
Q 017495 358 CCAYNS 363 (370)
Q Consensus 358 ~~~~~~ 363 (370)
....-.
T Consensus 238 ~~~~W~ 243 (250)
T PRK00517 238 ERGEWV 243 (250)
T ss_pred EeCCEE
Confidence 764433
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.2e-09 Score=90.23 Aligned_cols=97 Identities=18% Similarity=0.256 Sum_probs=74.5
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC-C
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR-G 266 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~-~ 266 (370)
..+. ..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.++++ +++.++.+|+.+. .+. .
T Consensus 34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~ 112 (198)
T PRK00377 34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKF 112 (198)
T ss_pred HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCC
Confidence 3344 6677899999999999999988764 6679999998 8888765431 4688999998752 222 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|+|++... ..+...+|+.+.+.|+|||++++
T Consensus 113 D~V~~~~~-----~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 113 DRIFIGGG-----SEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CEEEECCC-----cccHHHHHHHHHHHcCCCcEEEE
Confidence 99988532 23456899999999999999986
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=92.97 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=76.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-CC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-RG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~~ 266 (370)
..++..+. ..+..+|||||||+|..+..+++.. ++.+++++|. +.+++.+++. .+++++.+|.....+ .+
T Consensus 66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence 34455555 6778899999999999999888875 4568999998 8888877642 579999999887333 23
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++...+++.+ +.+.+.|+|||+|++..
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence 9999987766543 35667899999999853
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.4e-09 Score=91.03 Aligned_cols=101 Identities=20% Similarity=0.281 Sum_probs=76.9
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPR-G 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~-~ 266 (370)
++..+. ..+..+|||+|||+|.++..+++..|+.+++++|. |.+++.++++ .+++++.+|+.+. ... .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 444444 56778999999999999999998888899999998 8888776542 4689999988652 222 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.+++.. ......+|+++.+.|+|||++++...
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCCCeEEEEEee
Confidence 6655421 12346889999999999999999764
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-08 Score=95.79 Aligned_cols=125 Identities=22% Similarity=0.265 Sum_probs=91.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCC-C-C-CEEEecccc-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVP-R-G-DAIFLKWML- 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p-~-~-D~i~~~~vL- 275 (370)
+..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ .+++++.+|+++ ..+ . . |+|+++---
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 456999999999999999999999999999998 8888877653 368999999976 333 2 3 999984310
Q ss_pred --------------------cCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 276 --------------------HGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 276 --------------------h~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
-...+ +-...+++.+.+.|+|||.+++ |.-.
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~-------------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF-------------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc--------------------------
Confidence 00000 0124778888899999998765 3211
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~ 361 (370)
...+.+.+++++.||+.+++...-.
T Consensus 384 ---~Q~e~V~~ll~~~Gf~~v~v~kDl~ 408 (423)
T PRK14966 384 ---DQGAAVRGVLAENGFSGVETLPDLA 408 (423)
T ss_pred ---cHHHHHHHHHHHCCCcEEEEEEcCC
Confidence 0145788899999999888777543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-09 Score=92.40 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCC-CCC-CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENV-PRG-DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~-p~~-D~i~~~~vLh~~~d~~ 282 (370)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++. .+++++.+|+.+.. ... |+|+++--+++.+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 346999999999999999988887889999998 8888877753 57999999998733 333 9999977777654432
Q ss_pred H------------------HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 283 C------------------LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 283 ~------------------~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. .+.++.....|+|+|.+.++=. .. + . . ....+.+++++
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ys---s~---~-------~---------y-~~sl~~~~y~~ 200 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYS---GR---P-------Y---------Y-DGTMKSNKYLK 200 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEe---cc---c-------c---------c-cccCCHHHHHH
Confidence 1 3566777888888887776511 10 0 0 0 11236889999
Q ss_pred HHHhCCCCc
Q 017495 345 LAKNSGFSG 353 (370)
Q Consensus 345 ll~~aGf~~ 353 (370)
+|+++||..
T Consensus 201 ~l~~~g~~~ 209 (279)
T PHA03411 201 WSKQTGLVT 209 (279)
T ss_pred HHHhcCcEe
Confidence 999999964
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.9e-09 Score=92.09 Aligned_cols=98 Identities=14% Similarity=0.139 Sum_probs=75.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC--C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP--R- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p--~- 265 (370)
.++..+. ..+..+|||||||+|.++..+++..+ +.+++++|. +.+++.++++ ++++++.+|..+..+ .
T Consensus 68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~ 146 (215)
T TIGR00080 68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP 146 (215)
T ss_pred HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence 4444454 66788999999999999999998865 567999997 8888776542 579999999987332 2
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.|+|++.....+. .+.+.+.|+|||+|++.
T Consensus 147 fD~Ii~~~~~~~~--------~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKI--------PEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccc--------cHHHHHhcCcCcEEEEE
Confidence 3999987665543 34577899999999985
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.9e-09 Score=97.27 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~~-D~i~~~~ 273 (370)
+++.+|||||||+|.++..+++.+|+.+++++|+ |.+++.++++ ++++++.+|..+ ..++. |+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3568999999999999999999999999999999 9999877642 579999999865 23334 9998753
Q ss_pred cccC--CChh-HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHG--WTDE-HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~--~~d~-~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++. .+.. ....+++++++.|+|||++++.-.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 221 1211 125899999999999999998543
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=89.49 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC--CCEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR--GDAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~--~D~i~~ 271 (370)
.+...+|||+|||+|..+..++++++.++++++++ +.+.+.|++. +||++++.|+..- .+. .|+|+|
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44589999999999999999999999999999998 8888877653 6899999999872 222 289998
Q ss_pred cccccCCChh----------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 272 KWMLHGWTDE----------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 272 ~~vLh~~~d~----------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
+==.+.-.+. ...++++.+.+.|||||++.++-...
T Consensus 122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------------- 173 (248)
T COG4123 122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------------- 173 (248)
T ss_pred CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH----------------------------
Confidence 5433322221 24689999999999999999865311
Q ss_pred ccCHHHHHHHHHhCCCCcceEEec
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...+|.+++++.+|...++..+
T Consensus 174 --rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 --RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred --HHHHHHHHHHhcCCCceEEEEe
Confidence 1346788888888887776655
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.3e-09 Score=98.08 Aligned_cols=107 Identities=17% Similarity=0.280 Sum_probs=79.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---CCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---NVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~~p~~ 266 (370)
.++..+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+ ..++.++.+|+.. ..+.+
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 3444444 23456899999999999999999999999999998 767665542 2579999999854 45544
Q ss_pred --CEEEecccccCCChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHGWTDEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|++.+-.. |+... ...+|+.++++|+|||.+.+...
T Consensus 192 s~D~I~lnFPdP-W~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD 236 (390)
T PRK14121 192 SVEKIFVHFPVP-WDKKPHRRVISEDFLNEALRVLKPGGTLELRTD 236 (390)
T ss_pred ceeEEEEeCCCC-ccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence 8888754322 22111 14899999999999999999654
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=88.13 Aligned_cols=102 Identities=16% Similarity=0.077 Sum_probs=73.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC-C-CEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR-G-DAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~-~-D~i~~~~vLh 276 (370)
..+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ .++.++.+|+.+..+. . |+|++.--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455689999999999999998875 3458999998 7777765542 2478889998774443 3 9999863211
Q ss_pred CCCh-------------------hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 277 GWTD-------------------EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 277 ~~~d-------------------~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.-++ .....+++.+.+.|+|||+++++....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 1110 113568899999999999999865543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.5e-09 Score=95.51 Aligned_cols=94 Identities=20% Similarity=0.274 Sum_probs=74.7
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc-----
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW----- 273 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~----- 273 (370)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999998 8888877643 4699999999875554 3 9999851
Q ss_pred --------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEE
Q 017495 274 --------MLHGWTD----------EHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 274 --------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+++.+. +....+++++.+.|+|||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1122121 1236889999999999999887
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-08 Score=93.75 Aligned_cols=93 Identities=17% Similarity=0.128 Sum_probs=69.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|.++..+++. +..+++++|. +.+++.++++ .++.+...+.....+.. |+|+++...
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~-- 235 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA-- 235 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH--
Confidence 4689999999999999888764 4568999998 8888777642 34566666533322233 999986443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+....++.++++.|+|||+|++...
T Consensus 236 ---~~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 236 ---EVIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 2446889999999999999998664
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.2e-08 Score=98.60 Aligned_cols=125 Identities=17% Similarity=0.219 Sum_probs=91.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecc----
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKW---- 273 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~---- 273 (370)
..+|||+|||+|.++..++..+|+.+++++|. +.+++.++++ ++++++.+|+++..+. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999998 8888877642 4789999998875443 3 9999831
Q ss_pred ----------cccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 274 ----------MLHGWTD----------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 274 ----------vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++.+.+. +-...+++.+.+.|+|||.+++ |.. .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig--~------------------------ 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG--F------------------------ 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC--C------------------------
Confidence 1111110 1234678899999999999876 321 0
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCCC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAYN 362 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~~ 362 (370)
...+.+.+++.+.||..++++..-.+
T Consensus 272 ---~q~~~v~~~~~~~g~~~~~~~~D~~g 297 (506)
T PRK01544 272 ---KQEEAVTQIFLDHGYNIESVYKDLQG 297 (506)
T ss_pred ---chHHHHHHHHHhcCCCceEEEecCCC
Confidence 01456788888999998887765433
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=86.91 Aligned_cols=104 Identities=15% Similarity=0.193 Sum_probs=74.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VPR- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p~- 265 (370)
++...+....+..+|||+|||+|.++..+++.+ +..+++++|+.... ...++.++.+|+.+. .+.
T Consensus 22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence 344445445678899999999999999999887 56789999983322 235688899998752 233
Q ss_pred C-CEEEeccccc---CCCh------hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLH---GWTD------EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh---~~~d------~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++....| .|.- +....+|+.+++.|+|||++++..
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred CccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3 9999854322 1111 123689999999999999999853
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-08 Score=87.86 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=87.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCCCCC----CC-CEEEeccc---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFENVP----RG-DAIFLKWM--- 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~~~p----~~-D~i~~~~v--- 274 (370)
+..+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .+++++.+|+.+..+ .. |+|+++-=
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 346899999999999999999999999999998 8888877653 346899999886432 23 99987521
Q ss_pred ---ccCCChh------------------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 275 ---LHGWTDE------------------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 275 ---Lh~~~d~------------------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
++..+++ -...+++.+.+.|+|||++++.-. . +
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~-~-~------------------------ 219 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS-E-R------------------------ 219 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-c-c------------------------
Confidence 1111111 124788889999999999997421 0 1
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEe
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
..+++.+++++.||+.....+
T Consensus 220 ----~~~~v~~~l~~~g~~~~~~~~ 240 (251)
T TIGR03704 220 ----QAPLAVEAFARAGLIARVASS 240 (251)
T ss_pred ----hHHHHHHHHHHCCCCceeeEc
Confidence 134677888889998665444
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=86.21 Aligned_cols=101 Identities=14% Similarity=0.090 Sum_probs=84.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------------------CCCCeEEeccCCC-CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------------------FPGVEHVGGDMFE-NVP 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~D~~~-~~p 264 (370)
..+..+||+.|||.|.-+..|+.. +.+++++|+ +..++.+.+ ..+|++.++|+++ +.+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~ 118 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKI 118 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcc
Confidence 345689999999999999999984 678999998 777776411 1479999999998 322
Q ss_pred ----CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 ----RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 ----~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|+-..+|++++++...+..+.+.++|+|||.++++....
T Consensus 119 ~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 119 ANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred ccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 12 99999999999999999999999999999999999987643
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=77.61 Aligned_cols=92 Identities=25% Similarity=0.283 Sum_probs=74.7
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------CCCCCeEEeccCCCCC---CCC-CEEEecccccCC
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------SFPGVEHVGGDMFENV---PRG-DAIFLKWMLHGW 278 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~~~rv~~~~~D~~~~~---p~~-D~i~~~~vLh~~ 278 (370)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ...++++..+|+.+.. +.. |+|++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999988 67789999997 66655444 1257899999998832 233 999999999875
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 446689999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.87 E-value=3e-08 Score=92.86 Aligned_cols=120 Identities=18% Similarity=0.032 Sum_probs=86.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCC-C-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPR-G-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~-~-D~i~~~~v 274 (370)
+++..+|||+|||+|.++...+. .+.+++++|. +.++..++.+ ..+.+..+|+.+ +.+. . |+|++.--
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~--~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGL--MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHH--hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 66778999999999999988665 4678999998 8887765532 347899999987 5543 3 99998421
Q ss_pred ------cc-CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 275 ------LH-GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 275 ------Lh-~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
.. +...+...++|+.+++.|+|||++++.-+.. .+|.++++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~--------------------------------~~~~~~~~ 305 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR--------------------------------IDLESLAE 305 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC--------------------------------CCHHHHHh
Confidence 11 1111234689999999999999999854311 13567789
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
++|| ++..+..
T Consensus 306 ~~g~-i~~~~~~ 316 (329)
T TIGR01177 306 DAFR-VVKRFEV 316 (329)
T ss_pred hcCc-chheeee
Confidence 9999 7766554
|
This family is found exclusively in the Archaea. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=87.42 Aligned_cols=140 Identities=16% Similarity=0.217 Sum_probs=92.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----C----------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----P---------------------------- 250 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~---------------------------- 250 (370)
|..+..+|||||..|.++..+++.|....++++|+ +..+..|+++ +
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55788999999999999999999999999999999 7777777642 0
Q ss_pred ---------------CCeEEeccCCC-CCCCCCEEEec----ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 251 ---------------GVEHVGGDMFE-NVPRGDAIFLK----WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 251 ---------------rv~~~~~D~~~-~~p~~D~i~~~----~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
++.+...|+.. ..|+.|+|+|- +|==+|.|+....+++++++.|.|||+|++ |+-.
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv-EPQp--- 211 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV-EPQP--- 211 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE-cCCc---
Confidence 11122223332 23344888773 333358899999999999999999999887 3211
Q ss_pred CCCCccchhhhhhhhHHh---hhcCCCcccCHHHHHHHHHhC--CCCcce
Q 017495 311 PENQASSHIVFEQDLFML---AQTTGGRERSKKEYEALAKNS--GFSGLE 355 (370)
Q Consensus 311 ~~~~~~~~~~~~~d~~~~---~~~~~~~~~t~~e~~~ll~~a--Gf~~v~ 355 (370)
+..+.-.-.+. .....--...++.+..++.+. ||+.+.
T Consensus 212 -------WksY~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899|consen 212 -------WKSYKKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred -------hHHHHHHHHHHHHhhcCccceecCHHHHHhhhhhhhhheeeec
Confidence 11111111111 001112234688999999886 666554
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-07 Score=85.72 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=76.9
Q ss_pred CCCeEEEEcCcccHH----HHHHHhhCC----CCeEEEeeh-hhHHHhCCCC----------------------------
Q 017495 207 GLKVLVDVGGGIGVT----LGMITSRYP----CIKGISFDL-PHVLANAPSF---------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~----~~~l~~~~p----~~~~~~~D~-p~~~~~a~~~---------------------------- 249 (370)
+..+|.-.||++|.- ++.+.+..+ ++++++.|+ +.+++.|++-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 357999999999953 333444332 467899998 8777766421
Q ss_pred ---------CCCeEEeccCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 250 ---------PGVEHVGGDMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 250 ---------~rv~~~~~D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+|+|...|..+ ++| .. |+|+|.++|.|++++...+++++++++|+|||+|++-.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 347899999988 444 33 99999999999999999999999999999999988744
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=85.39 Aligned_cols=132 Identities=18% Similarity=0.183 Sum_probs=97.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC---C---------------CCCCeEEeccCCCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP---S---------------FPGVEHVGGDMFENVP- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~---~---------------~~rv~~~~~D~~~~~p- 264 (370)
..+..+||..|||.|.-...|+++ +..++++|+ +..++.+. . ..+|++.++|+++..+
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 556789999999999999999985 679999998 77777641 1 1468999999998322
Q ss_pred C--C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC-CCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 265 R--G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPE-NQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 265 ~--~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
. . |+|+=...|+.++++...+..+.++++|+|||.++++....+.... ++ -...+.+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GP-------------------Pf~v~~~ 173 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGP-------------------PFSVTEE 173 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSS-------------------S----HH
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCc-------------------CCCCCHH
Confidence 2 2 9999999999999999999999999999999996665554332110 11 1123688
Q ss_pred HHHHHHHhCCCCcceEEe
Q 017495 341 EYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~ 358 (370)
++.+++. .+|++..+..
T Consensus 174 ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 174 EVRELFG-PGFEIEELEE 190 (218)
T ss_dssp HHHHHHT-TTEEEEEEEE
T ss_pred HHHHHhc-CCcEEEEEec
Confidence 9999999 7888776654
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=87.39 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=69.7
Q ss_pred CCCeEEEEcCcccHHH----HHHHhh---CC--CCeEEEeeh-hhHHHhCCCC---------------------------
Q 017495 207 GLKVLVDVGGGIGVTL----GMITSR---YP--CIKGISFDL-PHVLANAPSF--------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~----~~l~~~---~p--~~~~~~~D~-p~~~~~a~~~--------------------------- 249 (370)
+..+|.-.||++|.-. +.+.+. .. ..++++.|+ +.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 5689999999999533 333341 12 467899998 8888877531
Q ss_pred -------CCCeEEeccCCC-CCCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 -------PGVEHVGGDMFE-NVPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 -------~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+|+|...|..+ +.+. . |+|+|++||-+++++...+++++++++|+|||+|++-..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 468999999998 3333 3 999999999999999999999999999999999999543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-08 Score=87.05 Aligned_cols=141 Identities=26% Similarity=0.349 Sum_probs=83.7
Q ss_pred CCCeEEEEcCc--ccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC----CCC--CeEEeccCCCC-----CCC--C---
Q 017495 207 GLKVLVDVGGG--IGVTLGMITSR-YPCIKGISFDL-PHVLANAPS----FPG--VEHVGGDMFEN-----VPR--G--- 266 (370)
Q Consensus 207 ~~~~vLDvG~G--~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~----~~r--v~~~~~D~~~~-----~p~--~--- 266 (370)
+...+|||||| |-....+++++ .|+.+++.+|. |-++..++. .++ ..++.+|+.++ .|+ +
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999 34455555444 79999999998 888887764 244 88999999873 111 1
Q ss_pred ----CEEEecccccCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 ----DAIFLKWMLHGWTD-EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 ----D~i~~~~vLh~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
=.+++..+||+++| ++...+++.++..|.||++|+|...+.+..+. ............ ......||.+|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p~-----~~~~~~~~~~~~-~~~~~~Rs~~e 221 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAPE-----RAEALEAVYAQA-GSPGRPRSREE 221 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSHH-----HHHHHHHHHHHC-CS----B-HHH
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCHH-----HHHHHHHHHHcC-CCCceecCHHH
Confidence 47888999999988 67889999999999999999999987643211 111111222111 23467899999
Q ss_pred HHHHHHhCCCCcce
Q 017495 342 YEALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~~ll~~aGf~~v~ 355 (370)
+.++|. ||+.++
T Consensus 222 i~~~f~--g~elve 233 (267)
T PF04672_consen 222 IAAFFD--GLELVE 233 (267)
T ss_dssp HHHCCT--TSEE-T
T ss_pred HHHHcC--CCccCC
Confidence 999998 887664
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-09 Score=81.55 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=74.7
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-C--CCCC--CEEEecccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-N--VPRG--DAIFLKWML 275 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~--~p~~--D~i~~~~vL 275 (370)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. .++++++.+|+.+ . .+.. |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999998 888776654 2579999999987 3 3433 999996555
Q ss_pred cCCCh------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTD------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+.... +....+++.+.+.|+|||.++++-+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 43211 1246889999999999999998643
|
... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=91.95 Aligned_cols=98 Identities=24% Similarity=0.238 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCC--CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFE--NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~--~~p~-~-D~i 269 (370)
+++.+||+||||+|..+..+++..+..+++++|+ +.+++.+++ .+|++++.+|... ..+. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4578999999999999999997655568999998 888887764 2579999999876 2222 3 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9865433222221 257899999999999998874
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-08 Score=81.83 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=88.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------C-CCCeEEeccCCCC-CCC-C-CEEEecccccC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------F-PGVEHVGGDMFEN-VPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~-~rv~~~~~D~~~~-~p~-~-D~i~~~~vLh~ 277 (370)
.+|||+|||.|.++..|++.-=.-+.+++|. +..++.|+. . +.|+|.+.|+.++ +-. . |+|+=..++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 3999999999999999998743334677786 666666543 1 4499999999984 322 2 87765444332
Q ss_pred C------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 278 W------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 278 ~------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
+ +.......+..+.+.|+|||+++|.-. ..|.+|+.+.++.-||
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC------------------------------N~T~dELv~~f~~~~f 198 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC------------------------------NFTKDELVEEFENFNF 198 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEec------------------------------CccHHHHHHHHhcCCe
Confidence 2 122224678899999999999998321 1367889999999999
Q ss_pred CcceEEecC
Q 017495 352 SGLEIVCCA 360 (370)
Q Consensus 352 ~~v~~~~~~ 360 (370)
.....+|.+
T Consensus 199 ~~~~tvp~p 207 (227)
T KOG1271|consen 199 EYLSTVPTP 207 (227)
T ss_pred EEEEeeccc
Confidence 988888775
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.1e-08 Score=85.45 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC---C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR---G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~---~ 266 (370)
.++..+. ..+..+|||||||+|..+..+++... +++++|. +.+++.++++ .+++++.+|..+..+. .
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 3344444 66778999999999999987777653 7888997 7777766542 4689999998774432 2
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++...++++ .+.+.+.|+|||++++.-.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 999998776654 3457789999999998543
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-08 Score=86.20 Aligned_cols=146 Identities=17% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCC-eEEecc---CCCCC-CC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGV-EHVGGD---MFENV-PR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv-~~~~~D---~~~~~-p~-~D 267 (370)
+++.+...+ ..+..++||+|||||.....|...-. +.+++|+ ..|++.+.+++-. +..+.| |.+.. ++ .|
T Consensus 114 l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~D 190 (287)
T COG4976 114 LAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFD 190 (287)
T ss_pred HHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCccc
Confidence 344444444 44589999999999999988877643 4577888 8888888765211 111111 33322 22 39
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|....||-++. ....++-.+...|+|||.+.+.-...++... +...... -...+..-..++++
T Consensus 191 Li~AaDVl~YlG--~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~--------f~l~ps~------RyAH~~~YVr~~l~ 254 (287)
T COG4976 191 LIVAADVLPYLG--ALEGLFAGAAGLLAPGGLFAFSVETLPDDGG--------FVLGPSQ------RYAHSESYVRALLA 254 (287)
T ss_pred chhhhhHHHhhc--chhhHHHHHHHhcCCCceEEEEecccCCCCC--------eecchhh------hhccchHHHHHHHH
Confidence 999999999877 4578999999999999999997665554311 1111000 11124566788999
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
..||+++++.++
T Consensus 255 ~~Gl~~i~~~~t 266 (287)
T COG4976 255 ASGLEVIAIEDT 266 (287)
T ss_pred hcCceEEEeecc
Confidence 999999998876
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=85.47 Aligned_cols=118 Identities=24% Similarity=0.302 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCe----EEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVE----HVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~----~~~~D~~~~~p~---~D~i~~~~v 274 (370)
.++.+|||+|||+|-++++.++- .-.+++++|+ |..++.++++ +.|. ....+..+ .+. .|+|+++ +
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~-~~~~~~~DvIVAN-I 237 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLE-VPENGPFDVIVAN-I 237 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchh-hcccCcccEEEeh-h
Confidence 37899999999999999988874 4457899998 8888877754 3344 33333332 222 3998764 4
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
|- +-...+...+.+.++|||++++.-.... ..+...+.+.++||.++
T Consensus 238 LA----~vl~~La~~~~~~lkpgg~lIlSGIl~~-----------------------------q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 238 LA----EVLVELAPDIKRLLKPGGRLILSGILED-----------------------------QAESVAEAYEQAGFEVV 284 (300)
T ss_pred hH----HHHHHHHHHHHHHcCCCceEEEEeehHh-----------------------------HHHHHHHHHHhCCCeEe
Confidence 53 3456899999999999999998664321 14567788889999998
Q ss_pred eEEec
Q 017495 355 EIVCC 359 (370)
Q Consensus 355 ~~~~~ 359 (370)
++..-
T Consensus 285 ~~~~~ 289 (300)
T COG2264 285 EVLER 289 (300)
T ss_pred EEEec
Confidence 87665
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3e-07 Score=83.73 Aligned_cols=123 Identities=25% Similarity=0.315 Sum_probs=89.2
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEec--ccccC--
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLK--WMLHG-- 277 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~--~vLh~-- 277 (370)
+|||+|||+|..+..++.++|..+++++|+ |..++.|+.+ .++.++.+|.+++.+.. |+|+++ ++-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 899999999999999999999999999998 9888877653 45667777888865544 888773 12111
Q ss_pred -CC----------------h--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccC
Q 017495 278 -WT----------------D--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERS 338 (370)
Q Consensus 278 -~~----------------d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t 338 (370)
.. + +-...++..+.+.|+|||.+++ |.-. + .
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~-------------------------~----q 242 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGL-------------------------T----Q 242 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECC-------------------------C----c
Confidence 10 0 1235788899999999887776 2211 0 1
Q ss_pred HHHHHHHHHhCC-CCcceEEecCCC
Q 017495 339 KKEYEALAKNSG-FSGLEIVCCAYN 362 (370)
Q Consensus 339 ~~e~~~ll~~aG-f~~v~~~~~~~~ 362 (370)
.+...+++.+.| |..+.......+
T Consensus 243 ~~~v~~~~~~~~~~~~v~~~~d~~g 267 (280)
T COG2890 243 GEAVKALFEDTGFFEIVETLKDLFG 267 (280)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCC
Confidence 567889999999 676666665433
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.5e-07 Score=79.83 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=81.3
Q ss_pred CCCeEEEEcCcccH----HHHHHHhhCC-----CCeEEEeeh-hhHHHhCCCC---------------------------
Q 017495 207 GLKVLVDVGGGIGV----TLGMITSRYP-----CIKGISFDL-PHVLANAPSF--------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~--------------------------- 249 (370)
+..+|.-+||+||. +++.+.+.+| .+++++.|+ ..+++.|+.-
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 57899999999993 5556667775 478899998 8888877531
Q ss_pred --------CCCeEEeccCCCCC--CCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 --------PGVEHVGGDMFENV--PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 --------~rv~~~~~D~~~~~--p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
..|.|..+|..++. +.. |+|+|.+||-+++.+.-.+++++.+..|+|||.|++-..
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccC
Confidence 24899999999843 344 999999999999999889999999999999999999443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=82.17 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC-CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN-VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~-~p~ 265 (370)
..++.... ..+..+|+|.|.|+|.++..|+.. .|.-+++.+|. ++..+.|+++ ++|++..+|+.+. .++
T Consensus 84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~ 162 (256)
T COG2519 84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE 162 (256)
T ss_pred HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence 34555555 889999999999999999999974 57789999997 8888877753 5699999999883 333
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
. |+|++ +++++ -.+|.+++++|+|||.+++.-++.+
T Consensus 163 ~vDav~L-----Dmp~P--W~~le~~~~~Lkpgg~~~~y~P~ve 199 (256)
T COG2519 163 DVDAVFL-----DLPDP--WNVLEHVSDALKPGGVVVVYSPTVE 199 (256)
T ss_pred ccCEEEE-----cCCCh--HHHHHHHHHHhCCCcEEEEEcCCHH
Confidence 4 98887 56766 4889999999999999999777653
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=65.33 Aligned_cols=51 Identities=61% Similarity=0.875 Sum_probs=42.7
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
++|++|++|||||.+... | ++|+|++||+.++..++|.++..|+|+||.|+
T Consensus 1 MaLk~aveLgI~dii~~~-----g-~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELGIPDIIHNA-----G-GGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTTHHHHHHHH-----T-TS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcCcHHHHHHc-----C-CCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence 589999999999999887 3 36999999999999436667889999999985
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-07 Score=79.55 Aligned_cols=141 Identities=18% Similarity=0.146 Sum_probs=88.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~ 285 (370)
...++||||+|.|..+..++..|..+.+|-.. +.|....+++ .++++..|-....+.. |+|.|.++|--..++ ..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~k-g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~ 169 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKK-GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LT 169 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhC-CCeEEehhhhhccCCceEEEeehhhhhccCCH--HH
Confidence 45789999999999999999988775555444 4444433332 3444433322222223 999999999776555 69
Q ss_pred HHHHHHHhCCCCcEEEEEeecCC-----CCC--CCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 286 LLKNCWEALPENGKVIIVESILP-----LVP--ENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 286 iL~~~~~~L~pgG~lli~e~~~~-----~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+|+.++++|+|+|++++.--..- .++ ..++. ..+++ .+...+-..+.+.+.|+.+||+++++..
T Consensus 170 LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~----e~l~~-----~g~~~E~~v~~l~~v~~p~GF~v~~~tr 240 (265)
T PF05219_consen 170 LLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPS----ELLPV-----KGATFEEQVSSLVNVFEPAGFEVERWTR 240 (265)
T ss_pred HHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCch----hhcCC-----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999999999998543211 111 00110 01110 1111111234455899999999999988
Q ss_pred cC
Q 017495 359 CA 360 (370)
Q Consensus 359 ~~ 360 (370)
.|
T Consensus 241 ~P 242 (265)
T PF05219_consen 241 LP 242 (265)
T ss_pred cC
Confidence 75
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=7.6e-08 Score=89.16 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCC--C-CCC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------------FPGVEHVGGDMFEN--V-PRG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~--~-p~~-D 267 (370)
..+.+||+||||+|..+..+++..+..+++.+|+ |.+++.++. .+|++++.+|..+. . +.. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4578999999999999999988655678999999 999888774 26899999998872 2 223 9
Q ss_pred EEEeccccc---CCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 268 AIFLKWMLH---GWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 268 ~i~~~~vLh---~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+|++...-. ....--...+++.+++.|+|||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 999863210 001111257899999999999998875
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.8e-08 Score=87.79 Aligned_cols=98 Identities=24% Similarity=0.200 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCC--CCEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPR--GDAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~--~D~i 269 (370)
+++.+||+||||.|..+..+++..+..+++.+|+ +.+++.++++ +|++++.+|... ..+. .|+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987533457889998 7788876652 589999999764 2332 3999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++...-+..+... ...+++.+++.|+|||.+++.
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 9854333222111 347899999999999998763
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=2e-07 Score=92.29 Aligned_cols=98 Identities=20% Similarity=0.287 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-------------CCCeEEeccCCC---CCCCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-------------PGVEHVGGDMFE---NVPRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-------------~rv~~~~~D~~~---~~p~~- 266 (370)
+++.+|||||||+|..+..+++ +|. .+++.+|+ |++++.++++ +|++++.+|..+ ..++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4578999999999999999987 465 78999998 9999987761 579999999876 22334
Q ss_pred CEEEecccccCCChh---HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDE---HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~---~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++...-...+.. -..++++.+++.|+|||.+++.-
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 999987432221111 02368999999999999988753
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-08 Score=86.82 Aligned_cols=98 Identities=21% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC--C-CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE--N-VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~--~-~p~~-D~i~ 270 (370)
+.+.+||+||||+|..+..+++..+..+++++|+ +.+++.+++. ++++++.+|..+ . .+.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988766678999998 8887766542 478888888765 1 1233 9999
Q ss_pred ecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
+...-..-+... ...+++.+++.|+|||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 866533222222 358899999999999999985
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=86.29 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=88.4
Q ss_pred HHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeE
Q 017495 183 FNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEH 254 (370)
Q Consensus 183 ~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~ 254 (370)
|-.+-+..+..-++.+.+ + ..+..+|||||||+|-+++..++. .-.+++++|. |.+++.++++ +++.+
T Consensus 140 FGTG~H~TT~lcl~~l~~-~--~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v 215 (295)
T PF06325_consen 140 FGTGHHPTTRLCLELLEK-Y--VKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAELNGVEDRIEV 215 (295)
T ss_dssp S-SSHCHHHHHHHHHHHH-H--SSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEE
T ss_pred ccCCCCHHHHHHHHHHHH-h--ccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEE
Confidence 333344444444433333 3 235679999999999999988775 3447999998 8888877653 33433
Q ss_pred EeccCCCCCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 255 VGGDMFENVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 255 ~~~D~~~~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
.. ..+.+.. |+|+.+ ++ .+-...++..+.+.|+|||+|++.-.....
T Consensus 216 --~~-~~~~~~~~~dlvvAN-I~----~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~----------------------- 264 (295)
T PF06325_consen 216 --SL-SEDLVEGKFDLVVAN-IL----ADVLLELAPDIASLLKPGGYLILSGILEEQ----------------------- 264 (295)
T ss_dssp --SC-TSCTCCS-EEEEEEE-S-----HHHHHHHHHHCHHHEEEEEEEEEEEEEGGG-----------------------
T ss_pred --EE-ecccccccCCEEEEC-CC----HHHHHHHHHHHHHhhCCCCEEEEccccHHH-----------------------
Confidence 21 1223323 998864 43 245678889999999999999996654321
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+++.+.+++ ||+.++.....
T Consensus 265 ------~~~v~~a~~~-g~~~~~~~~~~ 285 (295)
T PF06325_consen 265 ------EDEVIEAYKQ-GFELVEEREEG 285 (295)
T ss_dssp ------HHHHHHHHHT-TEEEEEEEEET
T ss_pred ------HHHHHHHHHC-CCEEEEEEEEC
Confidence 4567777776 99988877653
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=86.68 Aligned_cols=99 Identities=21% Similarity=0.286 Sum_probs=73.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCCCC--C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPS------FPGVEHVGGDMFENVP--R- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~~p--~- 265 (370)
.++..++ .++..+|||||||+|.++..+++..+. ..++++|. +.+++.+++ .+++.++.+|..+..+ .
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4444444 567789999999999999999998764 46899998 887776653 2568999999876332 2
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.|+|++...+++.+ ..+.+.|+|||++++..
T Consensus 150 fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 150 YDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred ccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 39999886665432 34678999999998854
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-07 Score=77.37 Aligned_cols=100 Identities=15% Similarity=0.238 Sum_probs=78.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~ 266 (370)
...++..+. .++..+|||||||+|..+.-|++... +++.++. +...+.|+++ .+|.++.+|-..-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 334555565 78889999999999999988887654 7888887 7777777652 5699999999986664 3
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|+.....-..|+ .+.+.|+|||++++..-
T Consensus 138 PyD~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 138 PYDRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CcCEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999887766663 35678999999999665
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.8e-07 Score=79.84 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=74.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC--------CC-C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV--------PR-G 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~--------p~-~ 266 (370)
..++.+|||||||+|..+..++...+ +.+++.+|. ++.++.++++ ++++++.+|..+.. .. .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44678999999999999999998865 679999998 8887777642 57999999997621 12 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++-. ..+.-..++..+.+.|+|||.|++-+.
T Consensus 146 D~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 146 DFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 9998742 234556889999999999998776443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=79.33 Aligned_cols=92 Identities=23% Similarity=0.332 Sum_probs=66.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCe-------EEeccCCCCC--CCC-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVE-------HVGGDMFENV--PRG-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~-------~~~~D~~~~~--p~~-D~i~~~~vL 275 (370)
....++|||||+|..++-+++.|. ++++.|. +.+++.+++..+++ ....++.+-. ++. |+|++..++
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~ 110 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAV 110 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhH
Confidence 344899999999988888888764 5788887 88999888764432 2222222211 334 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCc-EEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENG-KVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG-~lli~ 303 (370)
|.++- ..+.+.++++|||.| .+++-
T Consensus 111 HWFdl---e~fy~~~~rvLRk~Gg~iavW 136 (261)
T KOG3010|consen 111 HWFDL---ERFYKEAYRVLRKDGGLIAVW 136 (261)
T ss_pred Hhhch---HHHHHHHHHHcCCCCCEEEEE
Confidence 97663 588999999999876 55543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-07 Score=77.57 Aligned_cols=102 Identities=13% Similarity=0.221 Sum_probs=69.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D~ 268 (370)
.+++.+. ..+..+|||||||+|.++..++++ ..+++++|. +.+++.+++. ++++++.+|+.+ +.+.. |.
T Consensus 4 ~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 4 KIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCE
Confidence 4555555 667789999999999999999987 468899998 7777766542 579999999988 55543 77
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|++ +..++...+....+++.. .+.++|.+++..
T Consensus 81 vi~-n~Py~~~~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 81 VVG-NLPYNISTPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred EEE-CCCcccHHHHHHHHHhcC--CCcceEEEEEEH
Confidence 765 455555443333333321 133566665543
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=81.86 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=73.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~- 265 (370)
...++..+. ..+..+|||||||+|..+..++.... .-+++.+|. +...+.+++. .+|.++.+|....+++
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 345666666 78889999999999999998888754 446889997 8888777653 5799999998875553
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ |.|++.......+. .+.+.|++||+|++.-.
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence 2 99999888865542 35577999999998443
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=7.5e-07 Score=86.38 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=78.0
Q ss_pred HhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CC-C-CCE
Q 017495 200 DVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VP-R-GDA 268 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p-~-~D~ 268 (370)
..++ ..+..+|||+|||+|..+..+++..++.+++++|. +.+++.++++ -+++++.+|+.+. .+ . .|.
T Consensus 238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR 316 (427)
T ss_pred HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence 3444 55678999999999999999999988789999998 8887776542 2468899998762 22 2 399
Q ss_pred EEecc------ccc-------CCChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKW------MLH-------GWTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~------vLh-------~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++.- ++. ....++ -.++|+.+.+.|+|||+|++.....
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 98421 111 112221 2479999999999999999888644
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=7e-07 Score=87.09 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=75.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.++++ .+++++.+|+.+. ++.. |+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 5567899999999999999999986 6779999998 8777666432 3589999998762 3333 999873
Q ss_pred c------cccC-------CChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 W------MLHG-------WTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~------vLh~-------~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
- ++.+ ++..+ ...+|+.+.+.|||||+|+......
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1 1111 11122 1468999999999999999766544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=91.80 Aligned_cols=122 Identities=18% Similarity=0.136 Sum_probs=87.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------------------CCCeEEeccCCCCCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------------------PGVEHVGGDMFENVP 264 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------------------~rv~~~~~D~~~~~p 264 (370)
..+|||+|||+|..+..+++.+|..+++++|+ +.+++.++.+ +|++++.+|+++..+
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 46899999999999999999999999999998 8888766321 379999999988543
Q ss_pred C----CCEEEec--ccccC----CC--------------------------hh----HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 265 R----GDAIFLK--WMLHG----WT--------------------------DE----HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 265 ~----~D~i~~~--~vLh~----~~--------------------------d~----~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. .|+|+++ ++... ++ ++ -...++..+.+.|+|||.+++ |
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-E 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-N 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-E
Confidence 2 2888773 12110 00 01 125778888889999998775 3
Q ss_pred ecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH-HHHHhCCCCcceEEec
Q 017495 305 SILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE-ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~-~ll~~aGf~~v~~~~~ 359 (370)
.-. ...+.+. +++++.||+.++++..
T Consensus 278 iG~-----------------------------~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 278 MGG-----------------------------RPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ECc-----------------------------cHHHHHHHHHHHHCCCCeeEEeee
Confidence 211 1134566 6888899998887765
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-07 Score=86.41 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-CCEEEec--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-GDAIFLK-- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~D~i~~~-- 272 (370)
..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+|+++.+|+.+..+ . .|+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44668999999999999999988764 458999998 8887766542 468899999877323 2 3999862
Q ss_pred ----ccc-------cCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 ----WML-------HGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 ----~vL-------h~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++ ++++.++. ..+|+++.+.|+|||+|+.......
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 22333222 3689999999999999999887654
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.46 E-value=7.3e-07 Score=86.45 Aligned_cols=110 Identities=16% Similarity=0.189 Sum_probs=79.1
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCC-CC--C-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFE-NV--P-R 265 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~-~~--p-~ 265 (370)
++..++ ..+..+|||+|||+|..+..+++..+..+++++|. +..++.++++ . ++.+..+|... .. + .
T Consensus 230 ~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~ 308 (426)
T TIGR00563 230 VATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENE 308 (426)
T ss_pred HHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccccc
Confidence 333444 55678999999999999999999888789999998 8777766532 1 23346677654 21 2 2
Q ss_pred -CCEEEe------cccccCCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 -GDAIFL------KWMLHGWTD-------EH-------CLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 -~D~i~~------~~vLh~~~d-------~~-------~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|.|++ ..+++..++ ++ -.++|+++.+.|||||+|+..+....
T Consensus 309 ~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 309 QFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred ccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 299986 235655443 11 25899999999999999999888764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.2e-07 Score=78.96 Aligned_cols=91 Identities=23% Similarity=0.373 Sum_probs=67.0
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC----CC-CC-CEEEeccccc
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN----VP-RG-DAIFLKWMLH 276 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~----~p-~~-D~i~~~~vLh 276 (370)
.+||||||.|.++..++..+|+..++++|. ...+..+.. ..++.++.+|+..- ++ .. |-|++.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~---- 95 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN---- 95 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE----
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe----
Confidence 899999999999999999999999999997 555554432 37899999998771 23 23 555542
Q ss_pred CCChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEH-----------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+||+. ...+|+.+++.|+|||.|.+..-
T Consensus 96 -FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD 134 (195)
T PF02390_consen 96 -FPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD 134 (195)
T ss_dssp -S-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred -CCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence 34442 14899999999999999988654
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.7e-07 Score=79.79 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=89.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP-- 264 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p-- 264 (370)
.++..++ ..+..+|||.|.|+|.++..|++. .|.-+++.+|. ++..+.|+++ ++|++...|+.+ .++
T Consensus 31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 4555565 889999999999999999999976 68889999997 7777766542 579999999965 332
Q ss_pred --CC-CEEEecccccCCChhHHHHHHHHHHHhC-CCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCLKLLKNCWEAL-PENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L-~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
.. |.|++ +++++ -.+|..+.++| +|||++++.-++... ..
T Consensus 110 ~~~~~DavfL-----Dlp~P--w~~i~~~~~~L~~~gG~i~~fsP~ieQ-----------------------------v~ 153 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDP--WEAIPHAKRALKKPGGRICCFSPCIEQ-----------------------------VQ 153 (247)
T ss_dssp -TTSEEEEEE-----ESSSG--GGGHHHHHHHE-EEEEEEEEEESSHHH-----------------------------HH
T ss_pred ccCcccEEEE-----eCCCH--HHHHHHHHHHHhcCCceEEEECCCHHH-----------------------------HH
Confidence 22 88887 56766 36799999999 899999997665421 12
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
...+.|++.||..+++..+
T Consensus 154 ~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 154 KTVEALREHGFTDIETVEV 172 (247)
T ss_dssp HHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHCCCeeeEEEEE
Confidence 3445667789988876655
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.9e-07 Score=76.23 Aligned_cols=96 Identities=17% Similarity=0.263 Sum_probs=71.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCC-CCeEEeccCCC--CCCCC--CEEEeccccc----
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFP-GVEHVGGDMFE--NVPRG--DAIFLKWMLH---- 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~-rv~~~~~D~~~--~~p~~--D~i~~~~vLh---- 276 (370)
...-|||||||+|..+..|.+ ++...+++|+ |.|++.+.+.. .-.+..+|+-+ |++++ |-+++...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~--~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSD--SGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred CCcEEEEeccCCCcchheecc--CCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence 478999999999998888777 6688999998 99999887521 13578888888 55555 8776644432
Q ss_pred -----CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 -----GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 -----~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|.|..-...++..++.+|++|++.++.-
T Consensus 128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 1233334578899999999999988743
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=85.16 Aligned_cols=103 Identities=19% Similarity=0.114 Sum_probs=77.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C----CCC-C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N----VPR-G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~----~p~-~-D~i 269 (370)
..+..+|||+|||+|..+..+++... ..+++++|. +..++.++++ .+|+++.+|..+ + ... . |.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 55678999999999999999998864 468999998 7777766542 468999999876 2 222 2 999
Q ss_pred Eec------ccccCCCh-------hH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLK------WMLHGWTD-------EH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~------~vLh~~~d-------~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++. .++++.++ ++ -.++|+++.+.|||||+|+..+...
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 872 34544333 11 2588999999999999999877655
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.6e-06 Score=70.81 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=90.5
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-CCCC----C-CEEEecccccCCChh
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-NVPR----G-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~~p~----~-D~i~~~~vLh~~~d~ 281 (370)
..++|||||=+...... .++-..++.+|+... .-.+...||++ |.|. . |+|.++-||.+.|++
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p 120 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDP 120 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCH
Confidence 47999999986654433 345566888898321 23567889988 7763 2 999999999999977
Q ss_pred -HHHHHHHHHHHhCCCCcE-----EEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 282 -HCLKLLKNCWEALPENGK-----VIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 282 -~~~~iL~~~~~~L~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+.-.+|+++++.|+|+|. |+|+-+.. +. .+.+..+.+.|.++++.-||..++
T Consensus 121 ~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~---------------------Cv-~NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 121 KQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP---------------------CV-TNSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHHHHHhCCCCccCcceEEEEeCch---------------------Hh-hcccccCHHHHHHHHHhCCcEEEE
Confidence 456999999999999999 77753321 11 266677889999999999999998
Q ss_pred EEecC
Q 017495 356 IVCCA 360 (370)
Q Consensus 356 ~~~~~ 360 (370)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76653
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=75.78 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=70.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~~~D 258 (370)
+..+++.+. +.+...++|||||.|....+.+-..+.-+.+++++ +...+.+.. ..++++..+|
T Consensus 31 ~~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd 109 (205)
T PF08123_consen 31 VSKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD 109 (205)
T ss_dssp HHHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred HHHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence 345556665 77788999999999999998887777667999987 655543321 2468899999
Q ss_pred CCC-C-----CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 259 MFE-N-----VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 259 ~~~-~-----~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
+.+ + +.++|+|++++.+. + ++....|.+....||||.+++-.....+..
T Consensus 110 fl~~~~~~~~~s~AdvVf~Nn~~F--~-~~l~~~L~~~~~~lk~G~~IIs~~~~~~~~ 164 (205)
T PF08123_consen 110 FLDPDFVKDIWSDADVVFVNNTCF--D-PDLNLALAELLLELKPGARIISTKPFCPRR 164 (205)
T ss_dssp TTTHHHHHHHGHC-SEEEE--TTT----HHHHHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred ccccHhHhhhhcCCCEEEEecccc--C-HHHHHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence 987 3 24569999998864 3 455666788889999999998877766653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=83.04 Aligned_cols=104 Identities=13% Similarity=0.160 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C-C-CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N-V-PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~-~-p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+.++++.. +..+++++|+ +..++.++++ .++++..+|... + . ++. |.|++.
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 5567899999999999999999886 4678999998 8877766542 357899999875 2 2 223 999861
Q ss_pred ------ccccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 ------WMLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 ------~vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++.. ++.++. .++|.++.+.|||||.|+.......
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 12221 222111 5789999999999999988777654
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.35 E-value=3e-06 Score=71.66 Aligned_cols=101 Identities=20% Similarity=0.159 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCC------CCC-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENV------PRG-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~------p~~-D~ 268 (370)
..+..+|||+|||+|..++.++..++..+++..|.+++++..+. ..++.+...|..++. +.. |+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34678999999999999999988877788999998556654332 256888888876521 223 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+.+.++|+ ++....+++.+.+.|+|+|.+++.....
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 999999986 5667899999999999999988776655
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.8e-06 Score=74.19 Aligned_cols=92 Identities=13% Similarity=0.073 Sum_probs=67.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEecccccCCC-
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWT- 279 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~- 279 (370)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.++.. .++.++..|+.. +.... |+|+++==.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999998875 4578999998 8888888764 578999999986 33333 9999853332111
Q ss_pred -h--------hHHHHHHHHHHHhCCCCcE
Q 017495 280 -D--------EHCLKLLKNCWEALPENGK 299 (370)
Q Consensus 280 -d--------~~~~~iL~~~~~~L~pgG~ 299 (370)
+ .-...+++++.++++||+.
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 1 1134688999987777664
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=80.24 Aligned_cols=98 Identities=21% Similarity=0.231 Sum_probs=69.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------C----CCeEEeccCCCC------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------P----GVEHVGGDMFEN------V 263 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------~----rv~~~~~D~~~~------~ 263 (370)
+..+|||+|||-|+=+.--... .-..++++|+ +..++.++++ . ...|+.+|.+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 6789999999988766655553 2346889998 6667766531 1 245678887751 2
Q ss_pred CC--C-CEEEecccccCC--ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 264 PR--G-DAIFLKWMLHGW--TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 264 p~--~-D~i~~~~vLh~~--~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+. . |+|-|.+.||+. +.+.+..+|+++.+.|+|||+++...+
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 22 2 999999999994 555677899999999999999998665
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.6e-06 Score=76.22 Aligned_cols=104 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC--CCCEEEec-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP--RGDAIFLK- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p--~~D~i~~~- 272 (370)
..+..+|||+|||+|..+..+++... ...++++|. +..++.++++ .+|.++..|... +.. ..|.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 45678999999999999999988875 358999998 7777665532 457888888755 222 23999862
Q ss_pred -----cccc-------CCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 273 -----WMLH-------GWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 273 -----~vLh-------~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.++. .|++++. .++|+.+.+.|||||+|+.......
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 1221 2333322 4699999999999999988776543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.4e-06 Score=75.33 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC--------CCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV--------PRG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~--------p~~- 266 (370)
..++++|||||+++|..+.+++...| +.+++.+|. ++..+.++++ ++|+++.||..+.. ...
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 55689999999999999999999875 567899998 7777777542 58999999987621 122
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++-. +..+-..++..+.+.|+|||.|++-+..
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 9988742 3456778999999999999998774443
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=65.47 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=86.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhC-CCCCCCeEEeccCCC-C-----CCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANA-PSFPGVEHVGGDMFE-N-----VPR-- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a-~~~~rv~~~~~D~~~-~-----~p~-- 265 (370)
...+.++ +....-|||+|.|||.++.+++++. +....+.++. ++..... +.++.++++.||.+. . .+.
T Consensus 39 ~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~gq~ 117 (194)
T COG3963 39 KMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKGQF 117 (194)
T ss_pred HHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCCCe
Confidence 3444455 7788899999999999999998874 5556677765 6655544 345889999999987 2 222
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.|.|++.--+-.++.....++|+.+...|++||.++.....
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 29999998888899888899999999999999999987765
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.2e-06 Score=75.74 Aligned_cols=96 Identities=18% Similarity=0.219 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC-------CC-CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN-------VP-RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~-------~p-~~-D 267 (370)
.++++|||||+++|..+.++++..| +.+++.+|. |+..+.+++. ++|+++.+|..+. .+ .. |
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3678999999999999999999987 589999998 8777776542 6899999998752 11 12 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|++-.- ..+-...+..+.+.|+|||.+++-+..
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEcccc
Confidence 9998542 345678899999999999988875543
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.9e-06 Score=72.14 Aligned_cols=99 Identities=15% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEe-ccCCCCC----CCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVG-GDMFENV----PRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~-~D~~~~~----p~~-D~i 269 (370)
.+++++|||||.+.|..+.+++...| +.+.+.+|. |+..+.|+++ ++|+++. +|..+.. .+. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 55789999999999999999999999 889999998 8888888763 5688888 5877621 223 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
++-. ...+-..+|..+.+.|+|||.+++-+...+
T Consensus 137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 9843 234556899999999999998887554443
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.9e-06 Score=74.41 Aligned_cols=92 Identities=20% Similarity=0.337 Sum_probs=68.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---C-CCC-C-CEEEecccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---N-VPR-G-DAIFLKWML 275 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~-~p~-~-D~i~~~~vL 275 (370)
..+||||||.|.++..+++++|+..+++++. ..++..+.. ..++.++++|... . .+. . |-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999996 444443322 1378999999876 2 334 2 555543
Q ss_pred cCCChhH-----------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTDEH-----------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+||+- ...+|+.+.+.|+|||.|.+..-
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 23321 13789999999999999998653
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-06 Score=74.88 Aligned_cols=97 Identities=25% Similarity=0.327 Sum_probs=76.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~~-D~i~~ 271 (370)
.+++||-||+|.|..+..+++..+-.+++.+|+ |.+++.++++ +|++++..|..+ ..+.. |+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 447999999999999999999888889999999 9999988753 689999999887 34443 99998
Q ss_pred cccccCCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 017495 272 KWMLHGWTDE--HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 272 ~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-..=.--+.+ --..+++.|+++|+|+|.++..
T Consensus 156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 156 DSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred cCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 5442210000 0258999999999999999986
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.6e-06 Score=73.37 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRGD- 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~D- 267 (370)
...+++.+. ..+..+|||||||+|.++..++++.+. ++++|. +.+++.++. ..+++++.+|+.+ +.+..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666555 667789999999999999999998864 777776 666665543 3679999999987 554334
Q ss_pred -EEEecccccCCChhHHHHHHHHHHH
Q 017495 268 -AIFLKWMLHGWTDEHCLKLLKNCWE 292 (370)
Q Consensus 268 -~i~~~~vLh~~~d~~~~~iL~~~~~ 292 (370)
.+++++.-++++. .++.++..
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHhc
Confidence 3445555555554 44444443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.4e-06 Score=76.70 Aligned_cols=97 Identities=15% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC--C-CCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN--V-PRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~--~-p~~-D~i~ 270 (370)
+.+++||.||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|...- . ++. |+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3568999999999999999998666678999998 999888764 26899999998872 2 223 9999
Q ss_pred ecccccCCC--hhH---HHHHHH-HHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWT--DEH---CLKLLK-NCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~--d~~---~~~iL~-~~~~~L~pgG~lli~ 303 (370)
+-.. ..+. ... ...+++ .+++.|+|||.+++.
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 8621 1110 000 246787 899999999998764
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.7e-06 Score=73.43 Aligned_cols=103 Identities=22% Similarity=0.299 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC--------C----CCeEEeccCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF--------P----GVEHVGGDMFEN 262 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~----rv~~~~~D~~~~ 262 (370)
.++..+ .++...++|+|||-|+=+...-++ ++ .++++|+ ...+++++++ . .+.|+.+|.+..
T Consensus 109 ~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 109 VLINLY--TKRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred HHHHHH--hccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 344444 346678999999988877655543 33 5789998 4446666642 1 257888887651
Q ss_pred -----C----CCCCEEEecccccC-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 263 -----V----PRGDAIFLKWMLHG-W-TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 263 -----~----p~~D~i~~~~vLh~-~-~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. |..|+|-|.+++|+ | +.+.+.-+|+++.+.|+|||+++-.
T Consensus 185 ~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 185 RLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 1 22499999999998 4 4456789999999999999999863
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.8e-06 Score=73.69 Aligned_cols=113 Identities=19% Similarity=0.373 Sum_probs=79.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC----CCCeE--EeccCCC---C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF----PGVEH--VGGDMFE---N 262 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~----~rv~~--~~~D~~~---~ 262 (370)
++.++...+++| .+.+|||+|+|+|..+-+..+.++.. +++.+|. +.+.+.++.. ..... ...++.. +
T Consensus 21 vl~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (274)
T PF09243_consen 21 VLSELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLP 99 (274)
T ss_pred HHHHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccccc
Confidence 345565555533 56799999999999998888888854 5788897 7777655431 11110 0111111 2
Q ss_pred CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 263 VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 263 ~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.+..|+|+++++|-.+++.....+++++.+.+.+ .|+|+|+-.+.
T Consensus 100 ~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 100 FPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 3334999999999999988788999999888876 99999986654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=72.04 Aligned_cols=83 Identities=16% Similarity=0.241 Sum_probs=61.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCCCE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRGDA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~D~ 268 (370)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +++..|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445555554 5667899999999999999999973 57888987 777766553 3579999999988 6655587
Q ss_pred EEecccccCCChh
Q 017495 269 IFLKWMLHGWTDE 281 (370)
Q Consensus 269 i~~~~vLh~~~d~ 281 (370)
|++ +.-++.+.+
T Consensus 95 Vv~-NlPy~i~s~ 106 (258)
T PRK14896 95 VVS-NLPYQISSP 106 (258)
T ss_pred EEE-cCCcccCcH
Confidence 766 444555543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.1e-05 Score=73.54 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=59.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D 267 (370)
...+++.+. ..+..+|||||||+|.++..++++.+ +++++|. +.+++.+++. ++++++.+|+.+ +.+.- |
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 345555555 66778999999999999999999875 7888887 8888776543 589999999987 44432 4
Q ss_pred EEEecccccCCCh
Q 017495 268 AIFLKWMLHGWTD 280 (370)
Q Consensus 268 ~i~~~~vLh~~~d 280 (370)
.|+ .+.-++.+.
T Consensus 108 ~vv-~NlPY~iss 119 (272)
T PRK00274 108 KVV-ANLPYNITT 119 (272)
T ss_pred eEE-EeCCccchH
Confidence 444 445555543
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.11 E-value=5.3e-06 Score=80.25 Aligned_cols=126 Identities=22% Similarity=0.241 Sum_probs=77.4
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCC---CCCeEEEEcCcccHHHHHHHhhC----CCCeEEEeeh-h
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFD---GLKVLVDVGGGIGVTLGMITSRY----PCIKGISFDL-P 240 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~---~~~~vLDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p 240 (370)
.|+.+++++.....|.+++. ..+.+.....+ +...|+|||||+|-++...+++. ...++++++. |
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~-------~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIE-------EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHH-------HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESST
T ss_pred cHhhHhcCHHHHHHHHHHHH-------HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCH
Confidence 57777888776666666553 23333332111 35789999999999987766653 3578899986 5
Q ss_pred hHHHhC----CC---CCCCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 241 HVLANA----PS---FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 241 ~~~~~a----~~---~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
.+.... +. .++|+++.+|+.+ ..|+. |+|++-..=.....+-....|....+.|||||.++
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 433221 11 2789999999999 66665 99987443222222334466888889999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=73.46 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=90.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEe----ccCCCC--CCC-C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVG----GDMFEN--VPR-G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~----~D~~~~--~p~-~-D~i 269 (370)
...++||||||+|.....++.+.++.+++++|+ +..++.++.. ++|+++. .+++.. .+. . |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999998888888889999999998 8888877642 3566653 233332 122 2 999
Q ss_pred EecccccCCChhH---HHHHHHHH----------------HHhCCCCcEEEEEeecCCCCCCCCccchhhhhhh-hHHhh
Q 017495 270 FLKWMLHGWTDEH---CLKLLKNC----------------WEALPENGKVIIVESILPLVPENQASSHIVFEQD-LFMLA 329 (370)
Q Consensus 270 ~~~~vLh~~~d~~---~~~iL~~~----------------~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~~ 329 (370)
+++==+|.-.++. ...-.+++ .+.+.+||.+-++..+..+. ....-. .++..
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS--------~~~~~~~gwfts 265 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES--------KAFAKQVLWFTS 265 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH--------HHHHhhCcEEEE
Confidence 9977666433221 11222222 23344677766655554432 000000 11111
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.-++.-+.+.+.+.|++.|.+.+.+..+.
T Consensus 266 --mv~kk~~l~~l~~~L~~~~~~~~~~~e~~ 294 (321)
T PRK11727 266 --LVSKKENLPPLYRALKKVGAVEVKTIEMA 294 (321)
T ss_pred --EeeccCCHHHHHHHHHHcCCceEEEEEEe
Confidence 12555689999999999999888887764
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.9e-05 Score=71.22 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=71.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D 267 (370)
.++.+..+| ..+-|||||||+|-++...+.+ ...++..++...+.+.++.. +||.++.|.+.+ +.|+. |
T Consensus 168 Ail~N~sDF-~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDF-QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhccccc-CCcEEEEecCCccHHHHHHHHh-CcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 444443323 4578999999999988877664 34578888877777766542 789999999999 88986 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+|+.--.=+.+-.+-...---.+++.|+|.|+++
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKPNGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence 9987433222222322222334669999999876
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1e-05 Score=71.77 Aligned_cols=106 Identities=23% Similarity=0.230 Sum_probs=81.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC-C-CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR-G-DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~-~-D~i~ 270 (370)
+..++... +....++|+|||.|.++ ..+|.+..++.|+ ...+.-++..+.......|+.. +.++ . |..+
T Consensus 36 v~qfl~~~---~~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 36 VRQFLDSQ---PTGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred HHHHHhcc---CCcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 34454443 34789999999999765 3458889999998 5666666654444677888887 6654 3 9999
Q ss_pred ecccccCCChhHH-HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 271 LKWMLHGWTDEHC-LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 271 ~~~vLh~~~d~~~-~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
...++||++.... ..+|+.+.+.++|||..+|.-+..
T Consensus 109 siavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 109 SIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999988764 499999999999999988866544
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.9e-05 Score=68.04 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=64.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC--CC--CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV--PR--GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~--p~--~D~i~~~~vL 275 (370)
...+|||+|||+|.++..++.+. ..+++++|. +.+++.++++ .+++++.+|+.+.. .. .|+|++.==.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 45799999999999998766554 368999997 7777765542 46899999987622 22 3999885432
Q ss_pred cCCChhHHHHHHHHHHHh--CCCCcEEEEEee
Q 017495 276 HGWTDEHCLKLLKNCWEA--LPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~--L~pgG~lli~e~ 305 (370)
+. .-...+++.+... |+|++.+++...
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 21 1223455555553 789887776543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=71.39 Aligned_cols=96 Identities=14% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC---------CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV---------PRG 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~---------p~~ 266 (370)
..++++|||||+++|..+.+++...| +.+++.+|. ++..+.|++. ++|+++.||..+.. ...
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999998864 678999998 7777666542 68999999987621 123
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++-.- ..+-...+..+.+.|+|||.|++ |.+
T Consensus 157 fD~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~-DNv 191 (247)
T PLN02589 157 FDFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGY-DNT 191 (247)
T ss_pred ccEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEE-cCC
Confidence 99988532 34567889999999999998776 443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.6e-05 Score=69.87 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=68.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCCCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFENVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~~p~~-D~i~~~~ 273 (370)
+.+++||=||||.|..++++++. |. +++.+|+ +.+++.++++ +|++++.. +.+...+. |+|++-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 46799999999999999999985 55 9999999 8899888762 67877752 22222233 9999864
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. .+ ..+.+.++++|+|||.++..
T Consensus 148 ~----~~---~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred C----CC---hHHHHHHHHhcCCCcEEEEC
Confidence 3 22 47789999999999999874
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.6e-05 Score=77.54 Aligned_cols=100 Identities=11% Similarity=0.061 Sum_probs=69.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-----
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN----- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~----- 262 (370)
...++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+.
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344444444 4566899999999999999999875 58999998 8888877642 4689999998652
Q ss_pred CCC--CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 263 VPR--GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 263 ~p~--~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
++. .|+|++. -|-.....+++.+.+ ++|++.+++.
T Consensus 363 ~~~~~fD~Vi~d-----PPr~g~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLD-----PPRAGAAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhcCCCCEEEEC-----cCCcChHHHHHHHHh-cCCCeEEEEE
Confidence 222 2998763 222223355655555 6888887774
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=64.20 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHH-hCCCCCCCe-EEeccCCC-C---C-CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLA-NAPSFPGVE-HVGGDMFE-N---V-PR- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~-~a~~~~rv~-~~~~D~~~-~---~-p~- 265 (370)
+..++..+.......++||+|||+|.++..+++. +..+++++|. +.++. ..++++++. +...|+.. . . ++
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 4455555541235679999999999999999986 4467999998 64444 455555543 33334332 1 1 11
Q ss_pred --CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE-EEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc-----
Q 017495 266 --GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI-IVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER----- 337 (370)
Q Consensus 266 --~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~----- 337 (370)
.|+.+++.. .+|..+.++|+| |.++ ++.+-..-.+. .. ..+|-.+
T Consensus 142 ~~~DvsfiS~~----------~~l~~i~~~l~~-~~~~~L~KPqFE~~~~--------------~~--~~~giv~~~~~~ 194 (228)
T TIGR00478 142 ATFDVSFISLI----------SILPELDLLLNP-NDLTLLFKPQFEAGRE--------------KK--NKKGVVRDKEAI 194 (228)
T ss_pred eeeeEEEeehH----------hHHHHHHHHhCc-CeEEEEcChHhhhcHh--------------hc--CcCCeecCHHHH
Confidence 266665433 357889999999 5554 33322111100 00 0122222
Q ss_pred --CHHHHHHHHHhCCCCcceEEecC
Q 017495 338 --SKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 338 --t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
..+.+...+.+.||++..+.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 195 ALALHKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHHHHHcCCCeEeeEEECC
Confidence 34567778888999998888764
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.6e-05 Score=71.05 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=76.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC----CCeEEEeeh-hhHHHhCC------CCCCCeE--EeccCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP----CIKGISFDL-PHVLANAP------SFPGVEH--VGGDMFEN 262 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~~~a~------~~~rv~~--~~~D~~~~ 262 (370)
..++..++ +...|+|+|||+|.=+..|++.+. ..+++.+|+ .+.++.+. ..+.+.+ +++|+.+.
T Consensus 68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 34555443 556899999999998887777663 467899997 45555432 2245555 88888652
Q ss_pred ---CC-----C-C-CEEEecccccCCChhHHHHHHHHHHH-hCCCCcEEEEE
Q 017495 263 ---VP-----R-G-DAIFLKWMLHGWTDEHCLKLLKNCWE-ALPENGKVIIV 303 (370)
Q Consensus 263 ---~p-----~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~-~L~pgG~lli~ 303 (370)
.+ . . -++++.+.+.+++++++..+|+++++ .|+||+.|+|.
T Consensus 145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG 196 (319)
T TIGR03439 145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIG 196 (319)
T ss_pred HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEe
Confidence 21 1 2 44466789999999999999999999 99999998883
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.1e-05 Score=70.99 Aligned_cols=89 Identities=19% Similarity=0.287 Sum_probs=65.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~ 265 (370)
...+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+ +.+.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 445666555 6677899999999999999999864 46888887 777765543 3579999999987 5554
Q ss_pred CCEEEecccccCCChhHHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL 287 (370)
.|+|+ .+.-++++.+....+|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 48766 4666777766555555
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=80.35 Aligned_cols=96 Identities=14% Similarity=0.098 Sum_probs=70.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCC---CCCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFEN---VPRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~---~p~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..++.. ...+++.+|. +.+++.++++ ++++++.+|+++. .... |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4689999999999999999985 3347999998 8888877652 3789999998762 2233 9999831
Q ss_pred --ccc-----C-C-ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 274 --MLH-----G-W-TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 274 --vLh-----~-~-~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.-. . + ....-..+++.+.+.|+|||.|++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 000 0 0 0123457889999999999988774
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=57.72 Aligned_cols=99 Identities=16% Similarity=0.184 Sum_probs=67.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccH-HHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCC----CCEEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGV-TLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPR----GDAIF 270 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~----~D~i~ 270 (370)
.+.+.++ -.+..+|||||||+|. ++..|.+ -+..++++|. |..++.+++. .++++.+|++++-++ +|+|.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~--~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy 82 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKE--SGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY 82 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHH--CCCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence 3445554 3345799999999996 7777776 3678999998 8877777653 589999999985442 39998
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
..+ ++++...-+.++.+.. |.-++|....
T Consensus 83 sir-----pp~el~~~~~~la~~~--~~~~~i~~l~ 111 (134)
T PRK04148 83 SIR-----PPRDLQPFILELAKKI--NVPLIIKPLS 111 (134)
T ss_pred EeC-----CCHHHHHHHHHHHHHc--CCCEEEEcCC
Confidence 764 3455555555565554 3456654443
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-05 Score=71.96 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~-~-D~i 269 (370)
+.+.+||=||+|.|..+..+++..+-.+++.+|+ |.+++.+++. +|++++.+|... ...+ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4689999999999999999987665678999999 9998887652 589999999876 3444 4 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
++-..=-..+... ...+++.+++.|+|||.+++.-
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 8743321111111 2589999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.3e-06 Score=77.54 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=67.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEe---eh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISF---DL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~---D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~ 277 (370)
..+.+||||||+|.++..|+++. +..+-+ |. +..+..+.++ .|-.+.+-+.+ |+|.. |+|.|+.++..
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER-GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc-CcchhhhhhccccccCCccchhhhhccccccc
Confidence 45789999999999999999853 322211 22 2233333322 23333333322 77765 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|...+ ..+|-.+-++|+|||++++.-+-..
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 98765 4689999999999999999776544
|
; GO: 0008168 methyltransferase activity |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.1e-05 Score=72.00 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=68.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCC------CC-CCEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENV------PR-GDAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~------p~-~D~i~ 270 (370)
+..+|||+|||+|.++...+.. ...+++.+|. +.+++.++++ ++++++.+|+++.. .. .|+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 5689999999999998876643 3458999998 8888776642 26889999998721 12 39999
Q ss_pred ecccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+.---..-+. ..-..+++.+.+.|+|||.|+...
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 8521100011 123456677899999999999755
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.6e-05 Score=69.86 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=60.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-C-C-CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-P-R-GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-p-~-~D~i~~~~vL 275 (370)
++.+|||+|||+|.++..+++ +..+++++|. +.+++.+++. .+++++.+|+.+ .. . . .|+|++.-
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dP-- 248 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNP-- 248 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECC--
Confidence 357999999999999999998 4568999998 8888877642 468999999976 21 1 2 39988752
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|.......+.+....++|++.+++
T Consensus 249 ---Pr~G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 249 ---PRRGIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred ---CCCCccHHHHHHHHHcCCCeEEEE
Confidence 111111222233344677765555
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.1e-05 Score=76.49 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=68.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh-CCC-----CCCCeEEeccCCC---CCCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN-APS-----FPGVEHVGGDMFE---NVPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~-----~~rv~~~~~D~~~---~~p~~--D~i~~~~v 274 (370)
....+||||||.|.++..++..+|+..++++|. ...+.. .+. ..++.++.+|+.. .+|.+ |-|++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~-- 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL-- 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE--
Confidence 356899999999999999999999999999996 333332 221 2567788877642 34543 766653
Q ss_pred ccCCChhH-----------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDEH-----------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e 304 (370)
+||+. ...+|+.+++.|+|||.|.+..
T Consensus 425 ---FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 425 ---FPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred ---CCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 23332 1489999999999999999854
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00022 Score=62.89 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=68.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC----CCC--CC--CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE----NVP--RG--DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~----~~p--~~--D~i 269 (370)
..+..|||+|||+|..+..++...|...++++|. +.++..+.++ +++.++..++.. +.+ .+ |++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3456899999999999999999999999999998 7777666543 678777555443 222 23 777
Q ss_pred Eec--ccccCC--------------------C--hhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLK--WMLHGW--------------------T--DEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~--~vLh~~--------------------~--d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+++ +|.+.= . -+....++.-+.+.|+|||.+.+.-
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 763 333220 0 0112356677789999999887743
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=56.52 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=82.9
Q ss_pred CCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCCCC-CCC-CEEEecccccCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFENV-PRG-DAIFLKWMLHGW 278 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~~~-p~~-D~i~~~~vLh~~ 278 (370)
+.-++|||||+|..+..|.+.. |+..+...|+ |..++...+ .-++..+..|+.+.. ++. |+++++--.---
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT 123 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence 6789999999999999988874 7778888998 888776443 134678888888732 233 887764321111
Q ss_pred ChhH-------------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCH
Q 017495 279 TDEH-------------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSK 339 (370)
Q Consensus 279 ~d~~-------------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~ 339 (370)
++++ ..++|..+-..|.|.|.++++-... -.+
T Consensus 124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~-----------------------------N~p 174 (209)
T KOG3191|consen 124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA-----------------------------NKP 174 (209)
T ss_pred CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------cCH
Confidence 1111 1244555555556666666543221 125
Q ss_pred HHHHHHHHhCCCCcceEEe--cC-CCeeEEEEe
Q 017495 340 KEYEALAKNSGFSGLEIVC--CA-YNSWVMEFH 369 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~--~~-~~~~~~e~~ 369 (370)
+++-.+++.-||....... .+ ...+++.++
T Consensus 175 ~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~ 207 (209)
T KOG3191|consen 175 KEILKILEKKGYGVRIAMQRKAGGETLSILKFT 207 (209)
T ss_pred HHHHHHHhhcccceeEEEEEecCCceEEEEEEE
Confidence 6777788899987765433 22 344555544
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0002 Score=61.47 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=92.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CC--CeEEeccCCC-CCCCC--CEEEecccccCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PG--VEHVGGDMFE-NVPRG--DAIFLKWMLHGW 278 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~r--v~~~~~D~~~-~~p~~--D~i~~~~vLh~~ 278 (370)
.+..++|||||-|....++..+. --+.+..|. -.+++.++.. +. +....+|-.. ++.+. |+|+.+..+|..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 45689999999999999998864 336788897 7788777653 33 3455666444 55554 999999999854
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc------CHHHHHHHHHhCCCC
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER------SKKEYEALAKNSGFS 352 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~------t~~e~~~ll~~aGf~ 352 (370)
. +...-+.+|+.+|||+|.++-.=. ..+ ..+ .......+-.+-. .||-.. ...++-.+|..|||+
T Consensus 151 N--dLPg~m~~ck~~lKPDg~Fiasml-ggd----TLy-ELR~slqLAelER-~GGiSphiSPf~qvrDiG~LL~rAGF~ 221 (325)
T KOG2940|consen 151 N--DLPGSMIQCKLALKPDGLFIASML-GGD----TLY-ELRCSLQLAELER-EGGISPHISPFTQVRDIGNLLTRAGFS 221 (325)
T ss_pred c--cCchHHHHHHHhcCCCccchhHHh-ccc----cHH-HHHHHhhHHHHHh-ccCCCCCcChhhhhhhhhhHHhhcCcc
Confidence 3 456778899999999998775322 111 111 1111122222211 122211 346788999999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
...+..
T Consensus 222 m~tvDt 227 (325)
T KOG2940|consen 222 MLTVDT 227 (325)
T ss_pred cceecc
Confidence 876543
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00029 Score=60.26 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=79.6
Q ss_pred hchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeehhhHHHhCCCCCCCeEEeccCCCC-----
Q 017495 189 NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDLPHVLANAPSFPGVEHVGGDMFEN----- 262 (370)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~----- 262 (370)
+.+.+-+.++.+.+.-+++..+|+|+|+..|.++..+.+... +.+++++|+.++- ....|.++.+|+..+
T Consensus 27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~----~~~~V~~iq~d~~~~~~~~~ 102 (205)
T COG0293 27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK----PIPGVIFLQGDITDEDTLEK 102 (205)
T ss_pred chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc----cCCCceEEeeeccCccHHHH
Confidence 334444567777765467889999999999999998888754 4568999974332 224599999999873
Q ss_pred ----CCC-C-CEEEecc---cc-----cC-CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 263 ----VPR-G-DAIFLKW---ML-----HG-WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 263 ----~p~-~-D~i~~~~---vL-----h~-~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.+. . |+|++-. +- +| ..-.-+..++.-+...|+|||.+++-.+-.
T Consensus 103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC
Confidence 122 2 8887522 21 22 122235678888899999999999866543
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=4.5e-05 Score=69.77 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=68.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCC-CC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVP-RG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~~-D~i~~~~vLh 276 (370)
..+.|||||||+|-++..-+++. -.+++++|...+.+.+++. +.|+++.+.+.+ ..| +. |+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 56899999999999999888875 5688999977776665541 458999999988 677 44 9998866544
Q ss_pred CCC-hhHHHHHHHHHHHhCCCCcEEE
Q 017495 277 GWT-DEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 277 ~~~-d~~~~~iL~~~~~~L~pgG~ll 301 (370)
.+- +.-...+|-.=-+.|+|||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEc
Confidence 432 2223345555557899999876
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.9e-05 Score=71.87 Aligned_cols=97 Identities=18% Similarity=0.268 Sum_probs=66.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-----CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-----VP 264 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-----~p 264 (370)
.+...+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|+.+. ..
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444443 5566899999999999999999864 47899998 8888877652 5789999998652 11
Q ss_pred -CC-CEEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEE
Q 017495 265 -RG-DAIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 265 -~~-D~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli 302 (370)
.. |+|++.- |... ...+|+.+.+ ++|++.+++
T Consensus 360 ~~~~D~vi~dP-----Pr~G~~~~~l~~l~~-l~~~~ivyv 394 (431)
T TIGR00479 360 GQIPDVLLLDP-----PRKGCAAEVLRTIIE-LKPERIVYV 394 (431)
T ss_pred CCCCCEEEECc-----CCCCCCHHHHHHHHh-cCCCEEEEE
Confidence 22 8888621 1111 1355665554 789887666
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.5e-05 Score=64.02 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=67.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC----------------CCCeEEeccCCCCCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF----------------PGVEHVGGDMFENVPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~----------------~rv~~~~~D~~~~~p~ 265 (370)
+.+..++||||+|+|.++..+.... ++...+++|. |++++..+++ .++.++.||...-.++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 5578899999999999998877553 3344478887 8888866532 4688899999884443
Q ss_pred -C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 -G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 -~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+ |.|.+... +.++.+++..-|+|||+++|.
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhccCCeEEEe
Confidence 2 99988633 235667888899999999984
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00036 Score=62.13 Aligned_cols=95 Identities=18% Similarity=0.325 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhC-CCCCCCeEEeccCCC-CCCC--CC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANA-PSFPGVEHVGGDMFE-NVPR--GD 267 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a-~~~~rv~~~~~D~~~-~~p~--~D 267 (370)
....+++... ..+..+|+|||+|.|.++..|+++...+.++-+|. ...+... ...++++++.+|+.+ +++. .-
T Consensus 18 v~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~ 96 (259)
T COG0030 18 VIDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQP 96 (259)
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCC
Confidence 3556777665 55678999999999999999999877766666662 2333222 235789999999999 7775 33
Q ss_pred EEEecccccCCChhHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
..+.++.-|+.+.+-...+|..
T Consensus 97 ~~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhc
Confidence 3455677777777644444443
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=61.29 Aligned_cols=65 Identities=22% Similarity=0.239 Sum_probs=50.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCCCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRGDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~D~i~~~ 272 (370)
...+|+|+|||||.+++..+-.. -.+++++|+ |+.++.++++ .+|+|++.|+.+.....|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcC-CcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 56789999999999998776643 357889998 9888888764 57999999987644444777664
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00086 Score=57.89 Aligned_cols=129 Identities=20% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC---CCCCC--CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE---NVPRG--DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~---~~p~~--D~i~ 270 (370)
.++..+|||...|-|..++.-+++. -.+++.+.. |.+++.+.-+ .+|+++.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999888853 337777776 8898887654 358999999887 45543 8775
Q ss_pred ecccccCCC------hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 271 LKWMLHGWT------DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~------d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+-| .--...+-+++++.|+|||+++=..-..... . .|.. -+....+
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r---------y------------rG~d-~~~gVa~ 263 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR---------Y------------RGLD-LPKGVAE 263 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc---------c------------ccCC-hhHHHHH
Confidence 3311 1113578999999999999997543222110 1 1111 2456888
Q ss_pred HHHhCCCCcceEEecCC
Q 017495 345 LAKNSGFSGLEIVCCAY 361 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~ 361 (370)
.|+++||.+++......
T Consensus 264 RLr~vGF~~v~~~~~~~ 280 (287)
T COG2521 264 RLRRVGFEVVKKVREAL 280 (287)
T ss_pred HHHhcCceeeeeehhcc
Confidence 99999999888766543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00028 Score=60.49 Aligned_cols=94 Identities=17% Similarity=0.070 Sum_probs=60.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C--C-CC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V--P-RG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~--p-~~-D~i~~ 271 (370)
...+|||++||+|.++..++.+.. .+++.+|. +.+++.++++ ++++++.+|.++. . . .. |+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357999999999999999999865 37888997 7776655432 4688999998651 1 1 22 77776
Q ss_pred cccccCCChhHHHHHHHHHH--HhCCCCcEEEEEee
Q 017495 272 KWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVES 305 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~ 305 (370)
.=-... .....++..+. ..|+++|.+++ |.
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~ 159 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EE 159 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-Ee
Confidence 322211 11233444443 35777775554 44
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00022 Score=60.71 Aligned_cols=107 Identities=19% Similarity=0.213 Sum_probs=65.0
Q ss_pred HHHHHHhhcCCC--CCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------
Q 017495 195 MNKILDVYRGFD--GLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN--------- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~--~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~--------- 262 (370)
+.++.+.++-++ ...++||+||++|+++..++++. +..+++++|+.... ....+.+..+|+.++
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhh
Confidence 456666665233 45899999999999999999987 67889999984331 113445555665431
Q ss_pred CC---CC-CEEEecccccCC---------ChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 VP---RG-DAIFLKWMLHGW---------TDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ~p---~~-D~i~~~~vLh~~---------~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+ .. |+|++-.....- .-+-+...|.-+...|+|||.+++--.
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEES
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEec
Confidence 11 23 888875521111 112234556666778999999887444
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.9e-05 Score=68.10 Aligned_cols=112 Identities=21% Similarity=0.345 Sum_probs=71.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhH---HHhCCCC---CCCeEEeccCCC---CCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHV---LANAPSF---PGVEHVGGDMFE---NVPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~---~~~a~~~---~rv~~~~~D~~~---~~p~ 265 (370)
.+....+++ .+++|||||.|.|.-+.++-.-+|+++ ++++.. |.+ +....++ ........|+.. ++|.
T Consensus 104 ~L~~~~~df-apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 104 ELQKRVPDF-APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred HHHHhCCCc-CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence 333333434 356799999999999988888899985 555564 322 2211111 122233334333 5666
Q ss_pred CCEEEecccccCCChhH----HHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 266 GDAIFLKWMLHGWTDEH----CLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~----~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+|.|.+..++|.+-++. ....++++.+.+.|||.|+|+|.-.+.
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 68777776666543333 334899999999999999999986554
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00042 Score=59.98 Aligned_cols=111 Identities=22% Similarity=0.226 Sum_probs=79.0
Q ss_pred EEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCC---CCEEEecccccCCC
Q 017495 211 LVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPR---GDAIFLKWMLHGWT 279 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~---~D~i~~~~vLh~~~ 279 (370)
|.||||-+|.+...|+++...-+++..|+ +.-++.+++ .++|+++.+|-++..+. .|+|+++.+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999998 777776654 26899999998885443 378877654 3
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
-.-..+||.+....++....|++. +. .....+++||.+.||.+++=
T Consensus 77 G~lI~~ILe~~~~~~~~~~~lILq-P~------------------------------~~~~~LR~~L~~~gf~I~~E 122 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSSAKRLILQ-PN------------------------------THAYELRRWLYENGFEIIDE 122 (205)
T ss_dssp HHHHHHHHHHTGGGGTT--EEEEE-ES------------------------------S-HHHHHHHHHHTTEEEEEE
T ss_pred HHHHHHHHHhhHHHhccCCeEEEe-CC------------------------------CChHHHHHHHHHCCCEEEEe
Confidence 456778888888877765566651 11 12567899999999998863
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0009 Score=56.07 Aligned_cols=137 Identities=15% Similarity=0.128 Sum_probs=83.2
Q ss_pred CCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhC-----------CC--CCCCeEEeccCCC-CCCCC-C
Q 017495 204 GFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANA-----------PS--FPGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 204 ~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a-----------~~--~~rv~~~~~D~~~-~~p~~-D 267 (370)
++++..+|+|+=.|.|.++.-|.... |.-.++.+-..+....+ ++ +.+++.+..+... ..|+. |
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999999887753 33334333212221111 11 1345555555544 33343 6
Q ss_pred EEEecccccC-----CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHH
Q 017495 268 AIFLKWMLHG-----WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 268 ~i~~~~vLh~-----~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~ 342 (370)
+++....-|+ +....+.++-+.++++|||||.+++.|+......... +-. .-..++....
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------dt~------~~~ri~~a~V 189 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------DTI------TLHRIDPAVV 189 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------hhh------hhcccChHHH
Confidence 6655333222 2344567999999999999999999998765432211 000 0112356677
Q ss_pred HHHHHhCCCCcce
Q 017495 343 EALAKNSGFSGLE 355 (370)
Q Consensus 343 ~~ll~~aGf~~v~ 355 (370)
.+..+.+||+..-
T Consensus 190 ~a~veaaGFkl~a 202 (238)
T COG4798 190 IAEVEAAGFKLEA 202 (238)
T ss_pred HHHHHhhcceeee
Confidence 8888999998764
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00026 Score=67.46 Aligned_cols=90 Identities=10% Similarity=-0.003 Sum_probs=61.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC---C-CCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---R-GDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---~-~D~i~~~~vL 275 (370)
+..+|||++||+|.++..++. +..+++++|. +..++.++++ ++++++.+|+.+..+ . .|+|++.===
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~--~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAG--PDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred CCCEEEEccCCccHHHHHHhh--cCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 347999999999999999986 3468999998 8888766642 468999999865211 2 3988874110
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-.. ...+++.+. .++|++.+++.
T Consensus 311 ~G~----~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 311 RGI----GKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCC----cHHHHHHHH-hcCCCeEEEEE
Confidence 011 124455554 47888877764
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00016 Score=61.49 Aligned_cols=89 Identities=18% Similarity=0.219 Sum_probs=66.9
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH---HHhCC---CCCCCeEEeccCCC-CCCCC-CEEEecccccCCCh
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV---LANAP---SFPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTD 280 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~---~~~a~---~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d 280 (370)
+++|||+|.|.-+.-|+-.+|+.+++.+|. ..- ++.+. ...+++++.+.+.+ ..+.. |+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~~---- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVAP---- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSSS----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhcC----
Confidence 899999999999999999999999999994 322 22221 12578999888877 33344 9999987742
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...++.-+...++|||++++.-
T Consensus 127 --l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 127 --LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp --HHHHHHHHGGGEEEEEEEEEEE
T ss_pred --HHHHHHHHHHhcCCCCEEEEEc
Confidence 3578899999999999999864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.003 Score=56.77 Aligned_cols=134 Identities=15% Similarity=0.129 Sum_probs=86.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hh------HHHhCCC------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PH------VLANAPS------------------------------ 248 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~------~~~~a~~------------------------------ 248 (370)
...+||-=|||.|.++..++... ..+.+.+. -. ++....+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 46799999999999999999973 34444442 11 1111000
Q ss_pred ---------CCCCeEEeccCCC--CCC---CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC
Q 017495 249 ---------FPGVEHVGGDMFE--NVP---RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPEN 313 (370)
Q Consensus 249 ---------~~rv~~~~~D~~~--~~p---~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~ 313 (370)
..++....|||.+ ..+ .. |+|+..+.+-- -+++.+.|+.|.++|||||.-+=.-+..-.-
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~--- 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHF--- 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccC---
Confidence 0257788999988 222 12 99988877753 4578899999999999999544333332211
Q ss_pred CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 314 QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 314 ~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
-+.. ......-+.+.+|+.++.+..||++++-..
T Consensus 209 ---------~~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 ---------EPMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred ---------CCCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0000 000112456899999999999999986544
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00037 Score=61.45 Aligned_cols=75 Identities=20% Similarity=0.355 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----C---CCCeEEeccCCC-CCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----F---PGVEHVGGDMFE-NVP 264 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~---~rv~~~~~D~~~-~~p 264 (370)
+...++..-+ .++...|||||.|||.++..|++.. .+++.++. |.++....+ . .+.++..||++. +.|
T Consensus 46 v~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P 122 (315)
T KOG0820|consen 46 VIDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP 122 (315)
T ss_pred HHHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc
Confidence 4566776666 7788999999999999999999964 46666665 555554332 1 568999999998 777
Q ss_pred CCCEEEe
Q 017495 265 RGDAIFL 271 (370)
Q Consensus 265 ~~D~i~~ 271 (370)
..|+++.
T Consensus 123 ~fd~cVs 129 (315)
T KOG0820|consen 123 RFDGCVS 129 (315)
T ss_pred ccceeec
Confidence 7777765
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0014 Score=56.96 Aligned_cols=99 Identities=23% Similarity=0.392 Sum_probs=76.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC----CeEEEeeh-hhHHHhC-----CCCCC--CeEEeccCCC---CCCCC---CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC----IKGISFDL-PHVLANA-----PSFPG--VEHVGGDMFE---NVPRG---DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~----~~~~~~D~-p~~~~~a-----~~~~r--v~~~~~D~~~---~~p~~---D~ 268 (370)
+...++|+|+|+..=+..|...+.. ++++-+|. ..++... ++++. |.-+++|+.. ..|.. =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4789999999999988888888765 68888897 5555432 23444 5567788765 23332 56
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++...|-++++++|..+|.+++.+|.||-++++--.
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 6778999999999999999999999999999988433
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=63.99 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~ 261 (370)
+.+++..+. ..+...++|.+||.|..+..+++.+| +.+++++|. |.+++.+++. ++++++.+|+.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 456777665 55667999999999999999999986 789999998 9998877643 478888888765
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0032 Score=56.77 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=95.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCC----------CCC-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENV----------PRG- 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~----------p~~- 266 (370)
+...|+.+|||-=.....+.. .++++++-+|+|++++..++ ..+++++..|+...+ |..
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCC-CCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 456899999998888777743 23688899999998875432 257889999986321 112
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-cCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-TTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~t~~e~~~l 345 (370)
-++++-.++.+++.+++.++|+.+.+...||+.|++ |.+.+-.. .................. .+--...+.+++.++
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~-d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF-DYVRPLDG-EWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEW 237 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE-Eeccccch-hHHHHHHHHHHHhhhcccccccccCCChhhHHHH
Confidence 577888899999999999999999999989887775 54443111 000000000000000000 000011367999999
Q ss_pred HHhCCCCcceE
Q 017495 346 AKNSGFSGLEI 356 (370)
Q Consensus 346 l~~aGf~~v~~ 356 (370)
|.+.||+....
T Consensus 238 l~~~Gw~~~~~ 248 (260)
T TIGR00027 238 LAERGWRASEH 248 (260)
T ss_pred HHHCCCeeecC
Confidence 99999998765
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=57.55 Aligned_cols=120 Identities=19% Similarity=0.208 Sum_probs=85.0
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH---HHhCCC---CCCCeEEeccCCC-C-CCC-CCEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV---LANAPS---FPGVEHVGGDMFE-N-VPR-GDAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~---~~~a~~---~~rv~~~~~D~~~-~-~p~-~D~i~~~~vLh~ 277 (370)
+.+++|||+|.|.-+.-++-.+|+.+++.+|. ..- ++.+.. .++++++.+.+.+ . .+. .|+|+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 68999999999999999998899999999994 322 222221 2679999998887 2 234 6999987764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
....++.-+...+++||.++..-... ++. -..+.+.....-|+.+..+.
T Consensus 146 ----~L~~l~e~~~pllk~~g~~~~~k~~~--------------------------~~~-e~~e~~~a~~~~~~~~~~~~ 194 (215)
T COG0357 146 ----SLNVLLELCLPLLKVGGGFLAYKGLA--------------------------GKD-ELPEAEKAILPLGGQVEKVF 194 (215)
T ss_pred ----chHHHHHHHHHhcccCCcchhhhHHh--------------------------hhh-hHHHHHHHHHhhcCcEEEEE
Confidence 23567888899999999877522211 100 13456667777788888877
Q ss_pred ecC
Q 017495 358 CCA 360 (370)
Q Consensus 358 ~~~ 360 (370)
...
T Consensus 195 ~~~ 197 (215)
T COG0357 195 SLT 197 (215)
T ss_pred Eee
Confidence 653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0033 Score=58.00 Aligned_cols=95 Identities=19% Similarity=0.113 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-C-C-CEEEecccccCCChhH
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-R-G-DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~-~-D~i~~~~vLh~~~d~~ 282 (370)
.+..++|||||++|+++..++++ +.+++++|...+.......++|.+...|.+...| . . |.+++-.+-+ +
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~----P- 282 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVEK----P- 282 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEecccC----H-
Confidence 46789999999999999999996 4599999975555555667899999999988444 3 3 9998877643 2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEEeecCC
Q 017495 283 CLKLLKNCWEALPEN-GKVIIVESILP 308 (370)
Q Consensus 283 ~~~iL~~~~~~L~pg-G~lli~e~~~~ 308 (370)
..+++-+.+.|..| -+-.|...-.+
T Consensus 283 -~rva~lm~~Wl~~g~cr~aIfnLKlp 308 (357)
T PRK11760 283 -ARVAELMAQWLVNGWCREAIFNLKLP 308 (357)
T ss_pred -HHHHHHHHHHHhcCcccEEEEEEEcC
Confidence 36677777888776 33444444443
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00016 Score=58.60 Aligned_cols=97 Identities=19% Similarity=0.189 Sum_probs=67.0
Q ss_pred CCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCCCC--C-CC--CEEEe
Q 017495 208 LKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFENV--P-RG--DAIFL 271 (370)
Q Consensus 208 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~~~--p-~~--D~i~~ 271 (370)
..+||++|+| +|..+.-++...|...+.+.|= ...++..++ .+++.+...+....+ . +. |+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4789999999 5666666777778888888884 444443322 134444444444321 1 22 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.++.. ++....+.+.|...|+|.|+-++.-+.
T Consensus 110 ADClFf--dE~h~sLvdtIk~lL~p~g~Al~fsPR 142 (201)
T KOG3201|consen 110 ADCLFF--DEHHESLVDTIKSLLRPSGRALLFSPR 142 (201)
T ss_pred ccchhH--HHHHHHHHHHHHHHhCcccceeEecCc
Confidence 998864 677789999999999999997775543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0013 Score=59.45 Aligned_cols=96 Identities=18% Similarity=0.294 Sum_probs=66.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----CCCCCeEEeccCCC-CCCC--
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----SFPGVEHVGGDMFE-NVPR-- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~D~~~-~~p~-- 265 (370)
..+.+++.+. ..+...|+|||+|.|.++..|++.. .++++++. +..++..+ ..++++++.+|+.+ +.+.
T Consensus 18 ~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~ 94 (262)
T PF00398_consen 18 IADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLL 94 (262)
T ss_dssp HHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhh
Confidence 4556777776 6678999999999999999999987 66777765 55444333 34789999999998 5444
Q ss_pred --CCEEEecccccCCChhHHHHHHHHHHHhCCC
Q 017495 266 --GDAIFLKWMLHGWTDEHCLKLLKNCWEALPE 296 (370)
Q Consensus 266 --~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p 296 (370)
..+.+..+.=++.+ ..++.++...-+.
T Consensus 95 ~~~~~~vv~NlPy~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 95 KNQPLLVVGNLPYNIS----SPILRKLLELYRF 123 (262)
T ss_dssp SSSEEEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred cCCceEEEEEecccch----HHHHHHHhhcccc
Confidence 34555555555444 3566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00062 Score=57.41 Aligned_cols=100 Identities=18% Similarity=0.274 Sum_probs=63.2
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCCCCCC-CEEEec
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------------FPGVEHVGGDMFENVPRG-DAIFLK 272 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~~p~~-D~i~~~ 272 (370)
..-++|||||-|.++..|...||+.-++++.+ -.|.+..++ ..++.+...+...-.|.- .--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 45799999999999999999999999998886 555443321 134555555544423321 000111
Q ss_pred ccccCCChhH-----------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEH-----------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~-----------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
-.++.++|+. +..++.+..=+|++||.++.+..+.
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~ 186 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK 186 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence 1122223322 2367888888999999999877643
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0015 Score=62.32 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=68.3
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC---CCCCEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV---PRGDAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~---p~~D~i~~~~vLh~ 277 (370)
..+|||++||+|.++..++...+..+++++|. |..++.++++ ..+++..+|..... ...|+|++.- . .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~-G 135 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F-G 135 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C-C
Confidence 46899999999999999998877668999998 8888776642 34668888876522 2239998842 1 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. ...+|..+.+.++|||.|.+.
T Consensus 136 --s--~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 136 --S--PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --C--cHHHHHHHHHHhcCCCEEEEE
Confidence 1 246788878889999999997
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=59.88 Aligned_cols=93 Identities=24% Similarity=0.403 Sum_probs=71.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCC-------------CCCCeEEeccCCCC-CCC--C-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPS-------------FPGVEHVGGDMFEN-VPR--G- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~-------------~~rv~~~~~D~~~~-~p~--~- 266 (370)
++..++|-+|||.|..++++++ ||+. +++.+|+ |.|++.++. .+|++++..|.++. ... .
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4568999999999999999876 7955 7889999 999998873 16899999999872 222 2
Q ss_pred CEEEecccccCCChhH--------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDEH--------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~--------~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|+.- ++|+. ...+-.-+++.|+++|.+++.-
T Consensus 367 D~vIVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 777663 34432 1367778899999999998854
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.035 Score=52.61 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=65.4
Q ss_pred CCCeEEEEcCcccHHHHHHH--------hh-------CCCCeEEEeehhh--HHHhCCC------------------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMIT--------SR-------YPCIKGISFDLPH--VLANAPS------------------FPG 251 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~--------~~-------~p~~~~~~~D~p~--~~~~a~~------------------~~r 251 (370)
+..+|+|+|||+|..+..+. ++ -|...+..-|+|. .-...+. ..+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 46799999999997765432 22 2567777667652 1111100 001
Q ss_pred ---CeEEeccCCC-CCCCC--CEEEecccccCCCh--h----------------------------------HHHHHHHH
Q 017495 252 ---VEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD--E----------------------------------HCLKLLKN 289 (370)
Q Consensus 252 ---v~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d--~----------------------------------~~~~iL~~ 289 (370)
+.-+.|.|.. -+|.. +++++++.||.++. + +-..+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2335577777 57776 99999999997652 0 12245555
Q ss_pred HHHhCCCCcEEEEEeecCCC
Q 017495 290 CWEALPENGKVIIVESILPL 309 (370)
Q Consensus 290 ~~~~L~pgG~lli~e~~~~~ 309 (370)
=++-|.|||++++.-...++
T Consensus 223 Ra~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 223 RAQEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHHHhccCcEEEEEEecCCC
Confidence 56778999999998877654
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0047 Score=51.54 Aligned_cols=106 Identities=22% Similarity=0.223 Sum_probs=66.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEec-cCCCC---------CCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGG-DMFEN---------VPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~-D~~~~---------~p~ 265 (370)
++-+.+.=+++..+|||+||..|.++.-..++. |+-.+.++|+-.+.. ...++++.+ |+.++ .|.
T Consensus 59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p----~~Ga~~i~~~dvtdp~~~~ki~e~lp~ 134 (232)
T KOG4589|consen 59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP----PEGATIIQGNDVTDPETYRKIFEALPN 134 (232)
T ss_pred eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC----CCCcccccccccCCHHHHHHHHHhCCC
Confidence 444555535678999999999999999777765 998999999743321 134555555 55543 232
Q ss_pred C--CEEEeccc--------ccC-CChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 G--DAIFLKWM--------LHG-WTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~--D~i~~~~v--------Lh~-~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++-+. +.| ..-+-|..+|.-....++|+|.++.--+.
T Consensus 135 r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~ 186 (232)
T KOG4589|consen 135 RPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWD 186 (232)
T ss_pred CcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEec
Confidence 2 77765321 111 12233555666666777888888875443
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00025 Score=59.82 Aligned_cols=138 Identities=20% Similarity=0.167 Sum_probs=78.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCC--CCEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPR--GDAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~--~D~i~~~~vLh~~~d~~ 282 (370)
.+.++||+|+|.|..+..++..+.. +...++ ..|....+.. +.++ ....+ .+.. -|+|.|.++|.-..++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk-~ynV--l~~~ew~~t~~k~dli~clNlLDRc~~p- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK-NYNV--LTEIEWLQTDVKLDLILCLNLLDRCFDP- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc-CCce--eeehhhhhcCceeehHHHHHHHHhhcCh-
Confidence 4689999999999999988876543 222233 2233222221 1221 11122 1222 2999999998654444
Q ss_pred HHHHHHHHHHhCCC-CcEEEEEeecCCC------CCCCCccchhhhhhhhHHhhhcCCCccc--CHHHHHHHHHhCCCCc
Q 017495 283 CLKLLKNCWEALPE-NGKVIIVESILPL------VPENQASSHIVFEQDLFMLAQTTGGRER--SKKEYEALAKNSGFSG 353 (370)
Q Consensus 283 ~~~iL~~~~~~L~p-gG~lli~e~~~~~------~~~~~~~~~~~~~~d~~~~~~~~~~~~~--t~~e~~~ll~~aGf~~ 353 (370)
-++|+.++.+|+| .|++++.= ++|- +....+ ...... + . -+|+.+ ....+.++|+.|||.+
T Consensus 186 -~kLL~Di~~vl~psngrvivaL-VLP~~hYVE~N~~g~~-~rPdn~-----L-e-~~Gr~~ee~v~~~~e~lr~~g~~v 255 (288)
T KOG3987|consen 186 -FKLLEDIHLVLAPSNGRVIVAL-VLPYMHYVETNTSGLP-LRPDNL-----L-E-NNGRSFEEEVARFMELLRNCGYRV 255 (288)
T ss_pred -HHHHHHHHHHhccCCCcEEEEE-EecccceeecCCCCCc-CCchHH-----H-H-hcCccHHHHHHHHHHHHHhcCchh
Confidence 6999999999999 68877632 2221 000000 000000 1 1 134433 2345788999999999
Q ss_pred ceEEecC
Q 017495 354 LEIVCCA 360 (370)
Q Consensus 354 v~~~~~~ 360 (370)
..+...+
T Consensus 256 eawTrlP 262 (288)
T KOG3987|consen 256 EAWTRLP 262 (288)
T ss_pred hhhhcCC
Confidence 8887765
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0067 Score=49.38 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=64.0
Q ss_pred EEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC---CC---CeEEeccCCC---CCCC--C-CEEEeccccc
Q 017495 211 LVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF---PG---VEHVGGDMFE---NVPR--G-DAIFLKWMLH 276 (370)
Q Consensus 211 vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~---~r---v~~~~~D~~~---~~p~--~-D~i~~~~vLh 276 (370)
++|+|||+|... .+....+. ..++++|. +.++...+.. .. +.+..+|... +... . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999976 33343333 46777887 6555543321 11 5777777664 3333 3 998 544444
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++.+ ....++.+.+.++|+|.+++.......
T Consensus 130 ~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 130 HLLP--PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred hcCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 4443 568899999999999999998886544
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0054 Score=59.90 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCCC-CEEEe-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPRG-DAIFL- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~~-D~i~~- 271 (370)
..++.+|||+++|.|.=+.+++....+ -.++..|+ +.-+...+++ .++.+...|... ..+.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456789999999999999999998754 47788886 5544443321 456777777654 23333 88874
Q ss_pred ---c---------ccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ---K---------WMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ---~---------~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+ .+...|+.+++ .++|.++.+.|||||+|+-...+.
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~ 245 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL 245 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 2 12233444333 589999999999999997766544
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0023 Score=54.40 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=66.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe---------EEEeeh-hhHHHhCCCC-------CCCeEEeccC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK---------GISFDL-PHVLANAPSF-------PGVEHVGGDM 259 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-p~~~~~a~~~-------~rv~~~~~D~ 259 (370)
.++.... +++...|+|-=||+|+++++.+...++.. +++.|. +.+++.++.+ ..+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444333 77788999999999999998877777766 889998 8888776542 4588999999
Q ss_pred CC-CCCC-C-CEEEecccccC-CCh-hH----HHHHHHHHHHhCCCCcEEEE
Q 017495 260 FE-NVPR-G-DAIFLKWMLHG-WTD-EH----CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 260 ~~-~~p~-~-D~i~~~~vLh~-~~d-~~----~~~iL~~~~~~L~pgG~lli 302 (370)
.+ +.+. . |+|++.-=.-. ... .+ -.++++.+.++++|...+++
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 88 5343 3 98887321111 111 11 23678889999999444443
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.045 Score=47.21 Aligned_cols=114 Identities=15% Similarity=0.135 Sum_probs=82.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCC-CC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENV-PR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~-p~-~-D~i~~~~vL 275 (370)
...++.||||-++.+...|.+..+...++..|. +.-++.+.+ .+++++..+|.+.+. ++ . |+|+++.+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 445599999999999999999999999999996 665555443 268999999998843 33 2 88877643
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
.-.-...||.+-.+-|+.--++++. | +. ...++++||...+|.++.
T Consensus 95 ---GG~lI~~ILee~~~~l~~~~rlILQ----P------------------------n~---~~~~LR~~L~~~~~~I~~ 140 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKGVERLILQ----P------------------------NI---HTYELREWLSANSYEIKA 140 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcCcceEEEC----C------------------------CC---CHHHHHHHHHhCCceeee
Confidence 4456678888888887754455541 1 11 245788888888888765
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00055 Score=45.27 Aligned_cols=45 Identities=22% Similarity=0.326 Sum_probs=38.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.|++.|... ++++|+.|||+++|+ +..-+.|+|..|+..|++++
T Consensus 6 l~iL~~l~~~-------~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~ 50 (52)
T PF09339_consen 6 LRILEALAES-------GGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVER 50 (52)
T ss_dssp HHHHHCHHCT-------BSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeec
Confidence 3467777765 246899999999999 99999999999999999985
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0021 Score=53.59 Aligned_cols=96 Identities=18% Similarity=0.211 Sum_probs=70.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCCCEEEecccccCCCh
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTD 280 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d 280 (370)
..+.|+|.|+|-++.-.++. --+++.+.. |...+.+.++ .+++++.+|..+ .+..+|+|+|-..=-.+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999988876664 346777776 7776666653 679999999998 7756699987543222223
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.-..+++.+.+-|+-++.++=.+-.
T Consensus 112 E~qVpV~n~vleFLr~d~tiiPq~v~ 137 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTIIPQEVR 137 (252)
T ss_pred ccccHHHHHHHHHhhcCCccccHHHh
Confidence 44467889999999988888754443
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.022 Score=51.59 Aligned_cols=150 Identities=13% Similarity=0.174 Sum_probs=93.6
Q ss_pred HHHHHHhhcC---CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh------hhHHHhCCC-----------------
Q 017495 195 MNKILDVYRG---FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL------PHVLANAPS----------------- 248 (370)
Q Consensus 195 ~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~------p~~~~~a~~----------------- 248 (370)
++.+...+++ .+...+||-=|||.|.++..|+...+.+.+--+.. .-++...+.
T Consensus 135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~ 214 (369)
T KOG2798|consen 135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSL 214 (369)
T ss_pred HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccc
Confidence 4444444442 12357899999999999999999887766632221 001111000
Q ss_pred ----------------------CCCCeEEeccCCC--CCCC---C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEE
Q 017495 249 ----------------------FPGVEHVGGDMFE--NVPR---G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 249 ----------------------~~rv~~~~~D~~~--~~p~---~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~l 300 (370)
.+....-.|||.+ ..+. . |+|+.++.+-. ..++...|+.|.+.|||||+-
T Consensus 215 ~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDT--a~NileYi~tI~~iLk~GGvW 292 (369)
T KOG2798|consen 215 SRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDT--AHNILEYIDTIYKILKPGGVW 292 (369)
T ss_pred ccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeec--hHHHHHHHHHHHHhccCCcEE
Confidence 0123446689887 3333 2 99988876653 457889999999999999988
Q ss_pred EEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 301 li~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+=..+..-.-.+.. +.. ...+-+.+.+++.++.+.-||++++-..+
T Consensus 293 iNlGPLlYHF~d~~---------g~~----~~~siEls~edl~~v~~~~GF~~~ke~~I 338 (369)
T KOG2798|consen 293 INLGPLLYHFEDTH---------GVE----NEMSIELSLEDLKRVASHRGFEVEKERGI 338 (369)
T ss_pred EeccceeeeccCCC---------CCc----ccccccccHHHHHHHHHhcCcEEEEeeee
Confidence 76665443211100 000 01234568999999999999998875543
|
|
| >PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00092 Score=43.18 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=38.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
++.|+..|.++ |.++.||++.+++ ++..+++.|+.|...|+++
T Consensus 4 R~~Il~~L~~~---------~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 4 RLRILKLLSEG---------PLTVSELAEELGL----SQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp HHHHHHHHTTS---------SEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHhC---------CCchhhHHHhccc----cchHHHHHHHHHHHCcCee
Confidence 56678888886 8999999999999 9999999999999999996
|
One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B .... |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0056 Score=56.21 Aligned_cols=148 Identities=16% Similarity=0.090 Sum_probs=97.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC---------CCCeEEeccCCC-CCCC----------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF---------PGVEHVGGDMFE-NVPR----------G 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~---------~rv~~~~~D~~~-~~p~----------~ 266 (370)
+...|+-+|||-=.-...+-.. +++++.-+|+|++++..++. .+++++..|+++ +++. .
T Consensus 92 g~~qvViLgaGLDTRayRl~~~-~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~ 170 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLDWP-KGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSR 170 (297)
T ss_pred cccEEEEeccccccceeecCCC-CCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCC
Confidence 3689999999977666555431 25888899999999875542 379999999995 5432 1
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchhhhhh--hhHHhhhcCCCcccCHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHIVFEQ--DLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~~~~~--d~~~~~~~~~~~~~t~~e~ 342 (370)
=++++-.+|.+++.++..++|++|....+||..++.............. ........ ...... ..-......++
T Consensus 171 pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~e~ 248 (297)
T COG3315 171 PTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGE--LVYFGDDPAEI 248 (297)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhcccccccccc--ceeccCCHHHH
Confidence 5788889999999999999999999999999988876541111100000 00000000 000000 00112347899
Q ss_pred HHHHHhCCCCcceEE
Q 017495 343 EALAKNSGFSGLEIV 357 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~ 357 (370)
..++.+.||..+...
T Consensus 249 ~~~l~~~g~~~~~~~ 263 (297)
T COG3315 249 ETWLAERGWRSTLNR 263 (297)
T ss_pred HHHHHhcCEEEEecC
Confidence 999999999887663
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0019 Score=55.64 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=64.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~--D~i~~~~v 274 (370)
..+..+|+|.-||.|.++..+++..+...++..|+ |..++..++ .+++....+|..+-.+.. |-|++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l- 177 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL- 177 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE---
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC-
Confidence 34678999999999999999999777888999998 888776543 257889999988733232 8777753
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
| ..+..+|..+.+.+++||.+.
T Consensus 178 ----p-~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 178 ----P-ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ----T-SSGGGGHHHHHHHEEEEEEEE
T ss_pred ----h-HHHHHHHHHHHHHhcCCcEEE
Confidence 2 233578899999999998764
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0057 Score=49.76 Aligned_cols=96 Identities=14% Similarity=0.193 Sum_probs=62.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCC-CCCC-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFEN-VPRG-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~-~p~~-D~ 268 (370)
..+..+|+|+|||.|.++..|+.. .++++++++|. +..++.+... .++.+..+++... .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 357789999999999999999882 28899999997 6665554431 3466666665542 2233 77
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++.-|.--+++ ..+|+...+ |+-..++.-++.
T Consensus 103 ~vgLHaCG~Ls----~~~l~~~~~---~~~~~l~~vpCC 134 (141)
T PF13679_consen 103 LVGLHACGDLS----DRALRLFIR---PNARFLVLVPCC 134 (141)
T ss_pred EEEeecccchH----HHHHHHHHH---cCCCEEEEcCCc
Confidence 77655554444 345555555 565655544443
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0014 Score=44.91 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=44.5
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..+|..-.++.|++.|... +|.|+.+||+.+|+ ++..+++.|+.|...|+|+..
T Consensus 4 ~~aL~~p~R~~Il~~L~~~--------~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~ 57 (61)
T PF12840_consen 4 FKALSDPTRLRILRLLASN--------GPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVE 57 (61)
T ss_dssp HHHHTSHHHHHHHHHHHHC--------STBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHhcC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 3455556778888888443 38999999999999 999999999999999999964
|
... |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.002 Score=60.60 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=77.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
+...++|+|||.|.....+.. +.....+++|. +.-...... .....++.+|+.. ++++. |.+.+..+.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~ 188 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVV 188 (364)
T ss_pred ccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeec
Confidence 455899999999998876654 66777888876 443333322 1445668889888 67765 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
.|.++. ..++++++++++|||.++..|++....
T Consensus 189 ~~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 189 CHAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK 221 (364)
T ss_pred ccCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence 998865 688999999999999999999977544
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.082 Score=44.96 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=95.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCCCC-----CC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P----HVLANAPSFPGVEHVGGDMFENVP-----RG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~~p-----~~-D~i~~~~ 273 (370)
+++..+||=+|..+|+...++..-.++-.+.++.. | +.+..+.++.++--+.+|...|+. +. |+|+.-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D- 152 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQD- 152 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEEe-
Confidence 67899999999999999999999888666777765 4 345566777888889999877543 23 887753
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+- .++++.-+..++..-||+||.++++=-...-+.... ... .-++-.+.|++.||++
T Consensus 153 VA---Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~d-------------------p~~-vf~~ev~kL~~~~f~i 209 (231)
T COG1889 153 VA---QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTAD-------------------PEE-VFKDEVEKLEEGGFEI 209 (231)
T ss_pred cC---CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCC-------------------HHH-HHHHHHHHHHhcCcee
Confidence 21 235677788999999999998877544332211110 000 0122335668889999
Q ss_pred ceEEecC---CCeeEEEE
Q 017495 354 LEIVCCA---YNSWVMEF 368 (370)
Q Consensus 354 v~~~~~~---~~~~~~e~ 368 (370)
.+...+. ..+.++.+
T Consensus 210 ~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 210 LEVVDLEPYEKDHALIVA 227 (231)
T ss_pred eEEeccCCcccceEEEEE
Confidence 9887764 45555544
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.017 Score=48.73 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=69.7
Q ss_pred cCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCCCEEEeccccc
Q 017495 203 RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRGDAIFLKWMLH 276 (370)
Q Consensus 203 ~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~D~i~~~~vLh 276 (370)
++.-..++|||+|.|+|..++.-++.. -..++..|. |......+-+ -.|.+...|..-+-+..|+|+...+++
T Consensus 75 PetVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy 153 (218)
T COG3897 75 PETVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFY 153 (218)
T ss_pred ccccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceec
Confidence 334567899999999999888776643 223444454 6555554432 246777777766333349999999998
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+.+ ...+++....+....|-.+++.++-.+.
T Consensus 154 ~~~--~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 154 NHT--EADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred Cch--HHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 754 4567777555666667777877766554
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0017 Score=52.42 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=36.8
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++.|++.|+.-++-..+++.+++.|||||+|-|.-+
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 999999999999999999999999999999999999654
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.071 Score=46.58 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=88.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhCCCCCCCeEEeccCCC-C----CCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANAPSFPGVEHVGGDMFE-N----VPRG- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~D~~~-~----~p~~- 266 (370)
+...++.+.-..++..+||||+.||.++..++++. -.+++++|. .+.....+..+||...+.--.. - +.+.
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~ 145 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKP 145 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCC
Confidence 33445555412367899999999999999999863 346777885 4444445555666554432222 1 2222
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE-eecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV-ESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|++++--.+ . -...+|-.+...++|++-++.. -+-....+.. ........+ +........++.++
T Consensus 146 d~~v~DvSF--I---SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~--v~kkGvv~d-------~~~~~~v~~~i~~~ 211 (245)
T COG1189 146 DLIVIDVSF--I---SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQ--VGKKGVVRD-------PKLHAEVLSKIENF 211 (245)
T ss_pred CeEEEEeeh--h---hHHHHHHHHHHhcCCCceEEEEecchhhhhhhh--cCcCceecC-------cchHHHHHHHHHHH
Confidence 777764332 1 3468899999999999777652 2211111000 000000000 11222346788999
Q ss_pred HHhCCCCcceEEecC
Q 017495 346 AKNSGFSGLEIVCCA 360 (370)
Q Consensus 346 l~~aGf~~v~~~~~~ 360 (370)
+++.||++..+.+.+
T Consensus 212 ~~~~g~~~~gl~~Sp 226 (245)
T COG1189 212 AKELGFQVKGLIKSP 226 (245)
T ss_pred HhhcCcEEeeeEccC
Confidence 999999999988764
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0053 Score=49.07 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=47.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC---CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG---DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~---D~i~~~~ 273 (370)
.+..++|+|||.|-+..+. .+|. -.++++|+ |+.++.++.+ -.+++.+.|+.+..+.+ |..+++-
T Consensus 48 Egkkl~DLgcgcGmLs~a~--sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNp 122 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAF--SMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINP 122 (185)
T ss_pred cCcchhhhcCchhhhHHHh--hcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecC
Confidence 5689999999999988433 3444 46899999 9999988765 25678888888754432 7666644
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.004 Score=55.65 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=59.6
Q ss_pred EEeccCCC--CC------CC-CCEEEecccccCCC--hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 254 HVGGDMFE--NV------PR-GDAIFLKWMLHGWT--DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 254 ~~~~D~~~--~~------p~-~D~i~~~~vLh~~~--d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
++..|... +. |+ .|+|++..+|.... .++-...++++.++|||||+|+++....... + ..
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~--------Y-~v 208 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY--------Y-MV 208 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE--------E-EE
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee--------E-EE
Confidence 67788876 22 33 49999999998754 3345699999999999999999988754321 0 00
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
... . ...-..+.+.+++.|+++||.+.+...
T Consensus 209 G~~-~----F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 209 GGH-K----FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp TTE-E----EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred CCE-e----cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 000 0 011124789999999999999988775
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.008 Score=54.25 Aligned_cols=96 Identities=13% Similarity=0.187 Sum_probs=57.9
Q ss_pred CCCeEEEEcCcccHHHHH-HHhh-CCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCC-CC--CCCCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGM-ITSR-YPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFE-NV--PRGDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~-l~~~-~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~-~~--p~~D~i~~~ 272 (370)
.+.+|+=||||.=-++.- +++. .++..++++|. |...+.+++ ..+++|+.+|..+ .. .+.|+|++.
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 457999999997755554 4433 46788999998 887776643 2579999999876 32 233999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.... .+.++..++|.++.+.|+||..|++.
T Consensus 200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 7664 34445679999999999999988885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.035 Score=47.56 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=81.0
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-----CCCeEEeccCCC
Q 017495 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-----PGVEHVGGDMFE 261 (370)
Q Consensus 187 m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-----~rv~~~~~D~~~ 261 (370)
|.++....+......+ ..+..|||.||=|-|-....+.++-|..+.++---|+|....+.. .+|....|-..+
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh
Confidence 3334444444444433 356789999999999998888888788777655458888877653 567666665444
Q ss_pred ---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 262 ---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 262 ---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
..|.. |-|+.--.-.+ -++...+-+.+.++|||+|.+-......-+
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP~gv~SyfNg~~~~ 211 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKPEGVFSYFNGLGAD 211 (271)
T ss_pred hhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCCCceEEEecCcccc
Confidence 34543 77665433222 256788899999999999999887766544
|
|
| >PRK10141 DNA-binding transcriptional repressor ArsR; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.004 Score=48.64 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERV 110 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 110 (370)
-.+.+|.--.++.|+..|..+ ++.++.||++.+++ .+..+++.|+.|...|+|+..+ .|+ ...
T Consensus 8 ~~fkaLadptRl~IL~~L~~~--------~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r----~Gr-~~~ 70 (117)
T PRK10141 8 QLFKILSDETRLGIVLLLRES--------GELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRK----QGK-WVH 70 (117)
T ss_pred HHHHHhCCHHHHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----EcC-EEE
Confidence 445667777889999999764 37999999999999 9999999999999999998642 232 355
Q ss_pred eecch
Q 017495 111 YGAAP 115 (370)
Q Consensus 111 y~~~~ 115 (370)
|++++
T Consensus 71 Y~l~~ 75 (117)
T PRK10141 71 YRLSP 75 (117)
T ss_pred EEECc
Confidence 77765
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.059 Score=48.82 Aligned_cols=143 Identities=22% Similarity=0.204 Sum_probs=99.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeehhhHHHhCCC----C------------------------CCCeE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDLPHVLANAPS----F------------------------PGVEH 254 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~p~~~~~a~~----~------------------------~rv~~ 254 (370)
.+....|+-+|||.-.....|...+ +.++++-+|.|++++.... . .+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4577899999999999999999988 7889999999887764321 0 23444
Q ss_pred EeccCCC--CC-----C----CC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh
Q 017495 255 VGGDMFE--NV-----P----RG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF 321 (370)
Q Consensus 255 ~~~D~~~--~~-----p----~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 321 (370)
...|..+ .. + .. -+++.--+|-++++++...+|+.+.+.++ .+.+++.|.+.+.++ +..
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~-~a~fv~YEQi~~~D~-------Fg~ 236 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE-NAHFVNYEQINPNDR-------FGK 236 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC-cccEEEEeccCCCCh-------HHH
Confidence 5555542 10 0 01 45566678889999999999999998876 577888899886642 222
Q ss_pred hhhhHHhhhc--CC----C--cccCHHHHHHHHHhCCCCcceEEec
Q 017495 322 EQDLFMLAQT--TG----G--RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 322 ~~d~~~~~~~--~~----~--~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.|.... .+ | ...|.+..++-+.++||+.+.+..+
T Consensus 237 ----vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 237 ----VMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ----HHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 222111 01 1 1237888899999999999887664
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.012 Score=50.94 Aligned_cols=140 Identities=17% Similarity=0.106 Sum_probs=90.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCCCC-----CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-P----HVLANAPSFPGVEHVGGDMFENVP-----RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~~p-----~~-D~i~~~ 272 (370)
+.+..+||-+|..+|+...++..--. +-.+.+++. | +.+..++++.+|--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 67889999999999999999988754 677888886 5 455566677888888899886421 22 887764
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
-. + +++..-++.++..-||+||.++|+=-... .|... ...-.-.+=.+.|++.||+
T Consensus 151 Va-Q---p~Qa~I~~~Na~~fLk~gG~~~i~iKa~s--------------iD~t~------~p~~vf~~e~~~L~~~~~~ 206 (229)
T PF01269_consen 151 VA-Q---PDQARIAALNARHFLKPGGHLIISIKARS--------------IDSTA------DPEEVFAEEVKKLKEEGFK 206 (229)
T ss_dssp -S-S---TTHHHHHHHHHHHHEEEEEEEEEEEEHHH--------------H-SSS------SHHHHHHHHHHHHHCTTCE
T ss_pred CC-C---hHHHHHHHHHHHhhccCCcEEEEEEecCc--------------ccCcC------CHHHHHHHHHHHHHHcCCC
Confidence 33 2 35778889999999999999998643211 11100 0000012234566888999
Q ss_pred cceEEecC---CCeeEEEE
Q 017495 353 GLEIVCCA---YNSWVMEF 368 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~ 368 (370)
..+...+. .++.++.+
T Consensus 207 ~~e~i~LePy~~dH~~vv~ 225 (229)
T PF01269_consen 207 PLEQITLEPYERDHAMVVG 225 (229)
T ss_dssp EEEEEE-TTTSTTEEEEEE
T ss_pred hheEeccCCCCCCcEEEEE
Confidence 98887764 45555544
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.06 Score=47.85 Aligned_cols=105 Identities=17% Similarity=0.234 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCC----CC---CCCeEEeccCCC-CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAP----SF---PGVEHVGGDMFE-NVP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~----~~---~rv~~~~~D~~~-~~p 264 (370)
..-++..++ ..+..+|++-|.|+|.++.++++.. |.-+.+-+|. ..-.+.+. ++ +++++...|+.. -+.
T Consensus 94 ia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~ 172 (314)
T KOG2915|consen 94 IAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFL 172 (314)
T ss_pred HHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcc
Confidence 345666666 8899999999999999999999985 7778888886 33333333 22 678998888876 333
Q ss_pred C----CCEEEecccccCCChhHHHHHHHHHHHhCCCCc-EEEEEeecC
Q 017495 265 R----GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENG-KVIIVESIL 307 (370)
Q Consensus 265 ~----~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG-~lli~e~~~ 307 (370)
. +|.|++ +++.+. ..+--++++||-+| +|+-..++.
T Consensus 173 ~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~g~r~csFSPCI 213 (314)
T KOG2915|consen 173 IKSLKADAVFL-----DLPAPW--EAIPHAAKILKDEGGRLCSFSPCI 213 (314)
T ss_pred ccccccceEEE-----cCCChh--hhhhhhHHHhhhcCceEEeccHHH
Confidence 2 288887 344442 44566667888655 666655544
|
|
| >PHA00738 putative HTH transcription regulator | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.006 Score=46.13 Aligned_cols=61 Identities=18% Similarity=0.171 Sum_probs=49.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++.|++.|..+ ++.++.+|++.+++ .+..+++.|+.|..+|+|...+ .|+ ...|++.+..
T Consensus 13 tRr~IL~lL~~~--------e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK----~Gr-~vyY~Ln~~~ 73 (108)
T PHA00738 13 LRRKILELIAEN--------YILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYK----EGR-TLYAKIRENS 73 (108)
T ss_pred HHHHHHHHHHHc--------CCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEECCCc
Confidence 577888989876 36999999999999 9999999999999999999752 232 4567776544
|
|
| >PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0045 Score=44.96 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=49.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++++|+..|... +..+..+|.+.+++ +...+++.|+.|...|+|+..+. ..+++....|++|+.++.
T Consensus 1 vRl~Il~~L~~~--------~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~-~~~~~p~t~~~lT~~Gr~ 67 (80)
T PF13601_consen 1 VRLAILALLYAN--------EEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKE-FEGRRPRTWYSLTDKGRE 67 (80)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHH
T ss_pred CHHHHHHHHhhc--------CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEe-ccCCCCeEEEEECHHHHH
Confidence 467888888875 37999999999999 99999999999999999997542 122222345889988863
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0095 Score=41.76 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=45.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.+-.|+..|... |+ .++++.+||+.+|+ +...++++|..|...|+|+... . .+..|..+.
T Consensus 7 ~~~~IL~~L~~~-----g~-~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~---~---~~~~W~i~~ 66 (68)
T smart00550 7 LEEKILEFLENS-----GD-ETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQG---G---TPPLWKLTD 66 (68)
T ss_pred HHHHHHHHHHHC-----CC-CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC---C---CCCceEeec
Confidence 455678888875 21 13999999999999 9999999999999999999631 1 136677653
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0019 Score=49.68 Aligned_cols=90 Identities=24% Similarity=0.266 Sum_probs=39.5
Q ss_pred EEEcCcccHHHHHHHhhCCCC---eEEEeeh-h---hHHHhCCC---CCCCeEEeccCCCC---CC-CC-CEEEeccccc
Q 017495 212 VDVGGGIGVTLGMITSRYPCI---KGISFDL-P---HVLANAPS---FPGVEHVGGDMFEN---VP-RG-DAIFLKWMLH 276 (370)
Q Consensus 212 LDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p---~~~~~a~~---~~rv~~~~~D~~~~---~p-~~-D~i~~~~vLh 276 (370)
||||+..|..+..+++..+.. +++.+|. + ...+..++ .++++++.++..+. .+ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998887655 5899997 5 23333332 25799999998752 23 23 8888753 22
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. .+.+..-++.+.+.|+|||.+++-|
T Consensus 80 ~--~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S--YEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C--HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 3456788999999999999988754
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0089 Score=55.53 Aligned_cols=101 Identities=18% Similarity=0.231 Sum_probs=65.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-------CCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCC-C-CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-------YPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFE-N-VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~-~-~p-- 264 (370)
.....+|+|-.||+|.++.++.+. .+...++++|. +..+..++. .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 456679999999999999988874 47788999997 666554431 1234688889876 2 22
Q ss_pred CC-CEEEec--ccccCCCh-----------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 265 RG-DAIFLK--WMLHGWTD-----------------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 265 ~~-D~i~~~--~vLh~~~d-----------------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. |+|++. +....|.+ ..-..++..+.+.|++||++.++-+
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 22 988873 22221111 1113588999999999999877544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0055 Score=49.75 Aligned_cols=52 Identities=23% Similarity=0.271 Sum_probs=41.2
Q ss_pred eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 210 VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
+++|||||.|.++..+++.+|..+++.+|. |...+.+++. .+++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999997 7777655432 346666665543
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.021 Score=49.47 Aligned_cols=98 Identities=11% Similarity=0.157 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCC-------CCCCCeEEeccCCCCC----C----CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAP-------SFPGVEHVGGDMFENV----P----RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~-------~~~rv~~~~~D~~~~~----p----~~-D 267 (370)
-++++++|||.=||..+..++.+.|. -+++.+|. ++..+.+. -...|+++.++..+.. + .. |
T Consensus 72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfD 151 (237)
T KOG1663|consen 72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFD 151 (237)
T ss_pred hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCcee
Confidence 35789999999999999999999875 47888887 55554443 2367999999987632 1 12 8
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+++- +|- ++......++.+++++||.|++-....+
T Consensus 152 faFvD----adK-~nY~~y~e~~l~Llr~GGvi~~DNvl~~ 187 (237)
T KOG1663|consen 152 FAFVD----ADK-DNYSNYYERLLRLLRVGGVIVVDNVLWP 187 (237)
T ss_pred EEEEc----cch-HHHHHHHHHHHhhcccccEEEEeccccC
Confidence 87753 333 3456899999999999999887554443
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0066 Score=57.38 Aligned_cols=51 Identities=12% Similarity=0.069 Sum_probs=41.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
.+|||++||+|.++..+++... +++++|. +.+++.++++ .+++++.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998763 8999998 8888877653 368888888765
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.026 Score=51.40 Aligned_cols=100 Identities=19% Similarity=0.256 Sum_probs=71.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhC--------------------CCCeEEEeeh---hhHHHhCC-----C-----------
Q 017495 208 LKVLVDVGGGIGVTLGMITSRY--------------------PCIKGISFDL---PHVLANAP-----S----------- 248 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---p~~~~~a~-----~----------- 248 (370)
..+||-||||.|.-..+|+..+ +.+.++.+|+ ..|++... .
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 3799999999998887777665 2257888886 33443211 0
Q ss_pred -----C--CCCeEEeccCCC-CCC--------CC-CEEEecccccCC---ChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 249 -----F--PGVEHVGGDMFE-NVP--------RG-DAIFLKWMLHGW---TDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 249 -----~--~rv~~~~~D~~~-~~p--------~~-D~i~~~~vLh~~---~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
. -.++|...|+.+ ..+ +. ++|.+-++++-+ +..+..++|.++-..++||..|+|+|..-
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpG 245 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPG 245 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCC
Confidence 0 147899999987 321 12 888877776653 33456799999999999999999999744
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0025 Score=52.77 Aligned_cols=61 Identities=25% Similarity=0.427 Sum_probs=43.1
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC--C-CCEEEe
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP--R-GDAIFL 271 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p--~-~D~i~~ 271 (370)
..|+|+-||.|..+.++++.+. +++.+|+ |..++.++.+ ++|+++.+|+++. .. . .|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3699999999999999999864 5777776 6666665532 5899999999872 11 1 388876
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.024 Score=48.68 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=56.6
Q ss_pred CCCeEEEEcCcccHHHHHHHh---hC-CCCeEEEeeh--hhHHHhCCCC----CCCeEEeccCCCC--------C--CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITS---RY-PCIKGISFDL--PHVLANAPSF----PGVEHVGGDMFEN--------V--PRG 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~---~~-p~~~~~~~D~--p~~~~~a~~~----~rv~~~~~D~~~~--------~--p~~ 266 (370)
++..|+|+|.-.|+.+..++. .+ +..+++++|+ ...-..+.+. .||+++.||..++ . +..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~ 111 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH 111 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence 378999999999888876554 44 7789999986 2222222332 7999999998762 1 111
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+|+. ..=|.+ +++.+.|+.....+.||+++++-|....
T Consensus 112 ~vlVil-Ds~H~~--~hvl~eL~~y~plv~~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 112 PVLVIL-DSSHTH--EHVLAELEAYAPLVSPGSYLIVEDTIIE 151 (206)
T ss_dssp SEEEEE-SS------SSHHHHHHHHHHT--TT-EEEETSHHHH
T ss_pred ceEEEE-CCCccH--HHHHHHHHHhCccCCCCCEEEEEecccc
Confidence 34433 333332 3567889999999999999999777553
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.0089 Score=52.70 Aligned_cols=100 Identities=15% Similarity=0.152 Sum_probs=65.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC--CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~--D~i~~~~vLh~ 277 (370)
+.+.+|+|||||.=-++.-.....|+..++++|+ ...++..... ...++...|.....|.. |+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4589999999999999888778788999999998 7666654432 46778888999865543 99999999987
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+..+.. ..--++.+.+. .-+++|..+..
T Consensus 184 le~q~~-g~g~~ll~~~~-~~~~vVSfPtr 211 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR-SPHVVVSFPTR 211 (251)
T ss_dssp HHHHST-THHHHHHHHSC-ESEEEEEEES-
T ss_pred HHHHhc-chHHHHHHHhC-CCeEEEecccc
Confidence 665443 22223334443 23667666654
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=43.60 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=45.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
+.|++.|... .+++|+.+||+.+++ +...+.+.|+.|+..|++... ++ ++.|.+++.
T Consensus 8 ~~Il~~l~~~-------~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~---~~----~~~y~l~~~ 64 (91)
T smart00346 8 LAVLRALAEE-------PGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQD---GQ----NGRYRLGPK 64 (91)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeec---CC----CCceeecHH
Confidence 4567777664 138999999999999 999999999999999999863 11 367888764
|
|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.0098 Score=38.43 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=37.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
.+..|+..|.+. ++.|..|||+.+|+ +...+.+.|+.|...|+++
T Consensus 4 ~~~~Il~~l~~~--------~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 4 TQRKILNYLREN--------PRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHHC--------TTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence 355678888876 37999999999999 9999999999999999985
|
... |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.1 Score=48.40 Aligned_cols=102 Identities=18% Similarity=0.120 Sum_probs=71.9
Q ss_pred hcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEec-cCCC-CCCCC--CEEE
Q 017495 202 YRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGG-DMFE-NVPRG--DAIF 270 (370)
Q Consensus 202 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~-D~~~-~~p~~--D~i~ 270 (370)
+.+..++..|||==||||++++...- =++++++.|+ ..++.-++.+ ....+... |+.. +++.. |.|+
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl--~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIa 269 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGL--MGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIA 269 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhh--cCceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEE
Confidence 33355678999999999999998776 5788999998 7777777653 23434444 7776 67663 7776
Q ss_pred ec------ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 271 LK------WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 271 ~~------~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+- .....-. ++-..++|+.++++|++||++++.-+
T Consensus 270 tDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 270 TDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 61 1121111 34467999999999999999998544
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.028 Score=53.40 Aligned_cols=96 Identities=18% Similarity=0.105 Sum_probs=72.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCC----CC--C-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF--------PGVEHVGGDMFENV----PR--G-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~----p~--~-D~i 269 (370)
...+|||+=|=||.++.+.+. .+. ++|.+|. ...++.++++ .++.++++|.++.+ .. . |+|
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred cCCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 478999999999999998887 455 8999998 7778877653 46899999998722 22 2 999
Q ss_pred Eec--------ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 270 FLK--------WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 270 ~~~--------~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
++- ... |+ ..+-..++..+.+.|+|||.++++...
T Consensus 295 ilDPPsF~r~k~~~--~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 295 ILDPPSFARSKKQE--FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred EECCcccccCcccc--hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 881 111 11 123458899999999999999987654
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.031 Score=55.93 Aligned_cols=65 Identities=11% Similarity=0.079 Sum_probs=43.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC--------CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-------CC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC--------IKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-------VP 264 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-------~p 264 (370)
...+|+|.+||+|.++..+++..+. ..++++|+ +..+..++.. ..+.+...|+... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999887642 45688887 7666655321 1345555555431 11
Q ss_pred CC-CEEEe
Q 017495 265 RG-DAIFL 271 (370)
Q Consensus 265 ~~-D~i~~ 271 (370)
.. |+|+.
T Consensus 111 ~~fD~IIg 118 (524)
T TIGR02987 111 DLFDIVIT 118 (524)
T ss_pred CcccEEEe
Confidence 22 88887
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0088 Score=43.79 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++|..+||+.+++ ++..++++|..|...|+++..+ |+ ++.|.++...
T Consensus 24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~-----G~-~GGy~L~~~~ 71 (83)
T PF02082_consen 24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR-----GR-GGGYRLARPP 71 (83)
T ss_dssp C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET-----ST-TSEEEESS-C
T ss_pred CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC-----CC-CCceeecCCH
Confidence 36999999999999 9999999999999999998631 32 4678777543
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.12 Score=48.44 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=62.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh--------C--------CCCeEEEeehhh--HHHhCCC----------CCC--CeE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR--------Y--------PCIKGISFDLPH--VLANAPS----------FPG--VEH 254 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~--------~--------p~~~~~~~D~p~--~~~~a~~----------~~r--v~~ 254 (370)
.+..-+|+|+||.+|..+..+... + |.+.++.-|+|. --...+. ... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 456789999999999988775543 1 234666668752 1111110 122 445
Q ss_pred EeccCCC-CCCCC--CEEEecccccCCCh-------------------------------------hHHHHHHHHHHHhC
Q 017495 255 VGGDMFE-NVPRG--DAIFLKWMLHGWTD-------------------------------------EHCLKLLKNCWEAL 294 (370)
Q Consensus 255 ~~~D~~~-~~p~~--D~i~~~~vLh~~~d-------------------------------------~~~~~iL~~~~~~L 294 (370)
+.+.|.. -+|.+ |++++++.||.++. .+...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7788888 57776 99999999997642 11124455555678
Q ss_pred CCCcEEEEEeecCCC
Q 017495 295 PENGKVIIVESILPL 309 (370)
Q Consensus 295 ~pgG~lli~e~~~~~ 309 (370)
+|||++++.-...++
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999999887766
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=39.94 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
++.+..+|++.+++ +...+.+.++.|...|+|++.. +..|++ ...|.+|+.
T Consensus 17 ~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~-~~~d~R-~~~~~LT~~ 67 (68)
T PF13463_consen 17 GPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKER-DPHDKR-SKRYRLTPA 67 (68)
T ss_dssp S-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEE-ESSCTT-SEEEEE-HH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC-CCCcCC-eeEEEeCCC
Confidence 48999999999999 9999999999999999997642 223332 256888775
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.011 Score=56.01 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=41.3
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
.+|||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999988753 7899997 8888776643 468888888754
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.069 Score=55.33 Aligned_cols=111 Identities=16% Similarity=0.035 Sum_probs=71.0
Q ss_pred HHHHHHHhhcCC-CCCCeEEEEcCcccHHHHHHHhhC----C--------------------------------------
Q 017495 194 VMNKILDVYRGF-DGLKVLVDVGGGIGVTLGMITSRY----P-------------------------------------- 230 (370)
Q Consensus 194 ~~~~l~~~~~~~-~~~~~vLDvG~G~G~~~~~l~~~~----p-------------------------------------- 230 (370)
.+..++.... | ++...++|-.||+|+++++.+... |
T Consensus 177 lAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~ 255 (702)
T PRK11783 177 LAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAEL 255 (702)
T ss_pred HHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccccc
Confidence 3445554443 6 557899999999999998866531 1
Q ss_pred CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC---C-CCEEEecc--cccCCChhHHHHHHHHHHHhCC
Q 017495 231 CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP---R-GDAIFLKW--MLHGWTDEHCLKLLKNCWEALP 295 (370)
Q Consensus 231 ~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p---~-~D~i~~~~--vLh~~~d~~~~~iL~~~~~~L~ 295 (370)
..+++++|+ +.+++.++.+ +++++..+|+.+ +.+ . .|+|+++- .-..-.+.+...+.+.+.+.++
T Consensus 256 ~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk 335 (702)
T PRK11783 256 PSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLK 335 (702)
T ss_pred CceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHH
Confidence 236899998 8888877653 468999999987 332 1 38888752 1111122344444444444444
Q ss_pred ---CCcEEEEEee
Q 017495 296 ---ENGKVIIVES 305 (370)
Q Consensus 296 ---pgG~lli~e~ 305 (370)
||+.+.+...
T Consensus 336 ~~~~g~~~~llt~ 348 (702)
T PRK11783 336 QQFGGWNAALFSS 348 (702)
T ss_pred HhCCCCeEEEEeC
Confidence 8888877554
|
|
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.016 Score=51.88 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=47.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
+.|++.+... ..|+++.|||+.+|+ +..-+.|+|..|+..|+++++ ++.|++++....
T Consensus 12 l~IL~~l~~~-------~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~---------~~~Y~lG~~~~~ 69 (248)
T TIGR02431 12 LAVIEAFGAE-------RPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD---------GRLFWLTPRVLR 69 (248)
T ss_pred HHHHHHHhcC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEecHHHHH
Confidence 4577777654 248999999999999 999999999999999999852 367999876443
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >COG2345 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.025 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.361 Sum_probs=48.9
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
|+..|... +|+|+.|||+++|+ ++..+++.|..|++.|+++.....+.-|+..-.|++|..+..
T Consensus 16 il~lL~~~--------g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~ 79 (218)
T COG2345 16 ILELLKKS--------GPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE 79 (218)
T ss_pred HHHHHhcc--------CCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence 45566654 48999999999999 999999999999999999864222223454566888877653
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.017 Score=40.66 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=35.7
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.+|..+||+.+++ ++..++.+|..|+..|+|++.
T Consensus 5 i~~~l~~~--------~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~ 47 (69)
T PF09012_consen 5 IRDYLRER--------GRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKV 47 (69)
T ss_dssp HHHHHHHS---------SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEE
T ss_pred HHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEe
Confidence 45667665 48999999999999 999999999999999999964
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.022 Score=43.25 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=30.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~ 239 (370)
...-+...+. ..+....+|||||.|.+..-|.. .+.++.++|.
T Consensus 46 Li~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~--EGy~G~GiD~ 88 (112)
T PF07757_consen 46 LIELWRDMYG-EQKFQGFVDLGCGNGLLVYILNS--EGYPGWGIDA 88 (112)
T ss_pred HHHHHhcccC-CCCCCceEEccCCchHHHHHHHh--CCCCcccccc
Confidence 3444444443 34677899999999988887776 5677888884
|
; GO: 0008168 methyltransferase activity |
| >PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.027 Score=40.56 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=38.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+|+..+++ +...+.+.|+.|...|+++.. ++.|.+|+.+..+.
T Consensus 19 ~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~---------~~~Y~lTekG~~~l 66 (77)
T PF14947_consen 19 GAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK---------DGKYRLTEKGKEFL 66 (77)
T ss_dssp -B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE---------TTEEEE-HHHHHHH
T ss_pred CCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC---------CCEEEECccHHHHH
Confidence 7999999999999 999999999999999999742 58899999987544
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.086 Score=50.11 Aligned_cols=90 Identities=13% Similarity=0.147 Sum_probs=68.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC---CC-CCEEEecccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF------PGVEHVGGDMFENV---PR-GDAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~---p~-~D~i~~~~vL 275 (370)
..+|||+-||+|..+..++.+.++. +++..|. |..++.++++ .++.+..+|..... .. .|+|.+-- .
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 3689999999999999999986554 6888898 8888776543 34778888887621 12 39998854 2
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
..+ ..+|..+.+.+++||.|.+.
T Consensus 124 -Gs~----~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 124 -GTP----APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred -CCc----HHHHHHHHHhcccCCEEEEE
Confidence 212 36889999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.027 Score=51.36 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=46.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +.++++.|||+.+|+ +..-+.|+|..|+..||+..+. + .+.|++++..-
T Consensus 31 l~IL~~l~~~-------~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~---~----~~~Y~lG~~l~ 89 (274)
T PRK11569 31 LKLLEWIAES-------NGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG---E----LGHWAIGAHAF 89 (274)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCeEecCHHHH
Confidence 3456666653 247999999999999 9999999999999999998641 1 47899987643
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.093 Score=44.67 Aligned_cols=84 Identities=19% Similarity=0.267 Sum_probs=61.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC---------CCCeEEeccCCC-CC----------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF---------PGVEHVGGDMFE-NV----------PRG 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~---------~rv~~~~~D~~~-~~----------p~~ 266 (370)
+...|+-+|||-=.....+....++++++-+|+|++++..++. .+++++..|+.+ .+ +..
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 4459999999999999999887788999999999998866542 236789999986 21 122
Q ss_pred -CEEEecccccCCChhHHHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNC 290 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~ 290 (370)
-++++-.++.+++.+++..+|+.+
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHh
Confidence 677888899999999998888876
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.099 Score=50.70 Aligned_cols=127 Identities=20% Similarity=0.269 Sum_probs=82.9
Q ss_pred ChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCC--CCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-h
Q 017495 168 TQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDG--LKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-P 240 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~--~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p 240 (370)
..|+.+++++-....|.+++ ...+.+..++.+. ...|+-+|+|-|-+..+..+. .-.++.++++. |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai-------~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAI-------LKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHH-------HHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 35666777776555555543 4466666553333 678999999999887765554 34567788886 7
Q ss_pred hHHHhCCC------CCCCeEEeccCCC-CCC-C-CCEEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEE
Q 017495 241 HVLANAPS------FPGVEHVGGDMFE-NVP-R-GDAIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 241 ~~~~~a~~------~~rv~~~~~D~~~-~~p-~-~D~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli 302 (370)
.++-.... ..+|+++..||.+ .-| + .|++++ ..|--+.|.+ ...-|..+.+.|||+|.-+=
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 66544332 1689999999998 433 3 388765 3333333333 23668899999999986653
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=48.19 Aligned_cols=96 Identities=21% Similarity=0.174 Sum_probs=75.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC---CCCEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP---RGDAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p---~~D~i~~~~vL 275 (370)
.+.+|||.=+|.|.++..+++.. ..+++.+|+ |..++..+++ .++..+.||..+-.+ .+|-|+|.+.-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g-~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~ 266 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKG-RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcC-CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence 47899999999999999998864 334999998 9888766542 458899999988333 35999987543
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
....+|..+.+.+++||.+...+.+..+
T Consensus 267 ------~a~~fl~~A~~~~k~~g~iHyy~~~~e~ 294 (341)
T COG2520 267 ------SAHEFLPLALELLKDGGIIHYYEFVPED 294 (341)
T ss_pred ------cchhhHHHHHHHhhcCcEEEEEeccchh
Confidence 2357788888999999999998887654
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.034 Score=35.60 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=31.6
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.+..+||+.+++ +...+.+.|+.|.+.|++..
T Consensus 8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~ 40 (48)
T smart00419 8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISR 40 (48)
T ss_pred ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999985
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.033 Score=50.23 Aligned_cols=58 Identities=7% Similarity=0.140 Sum_probs=46.7
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +++++.|||+.+|+ +..-+.|+|+.|+..||+.++. + ++.|++++..-
T Consensus 17 l~IL~~l~~~--------~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~---~----~~~Y~lG~~~~ 74 (257)
T PRK15090 17 FGILQALGEE--------REIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG---E----SEKYSLTLKLF 74 (257)
T ss_pred HHHHHHhhcC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEecHHHH
Confidence 3456666554 37999999999999 9999999999999999998631 1 47899997653
|
|
| >PRK06266 transcription initiation factor E subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.087 Score=44.51 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=40.2
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|+++|... +++|.++||..+|+ +...++++|..|...|++...
T Consensus 25 ~~Vl~~L~~~--------g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~ 69 (178)
T PRK06266 25 FEVLKALIKK--------GEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK 69 (178)
T ss_pred hHHHHHHHHc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence 4488988875 38999999999999 999999999999999999953
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.041 Score=50.03 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=46.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.|++.|... +.++++.|||+.+|+ +..-+.|+|..|+..|||.++. . .+.|+++...
T Consensus 28 l~IL~~~~~~-------~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~---~----~~~Y~lG~~l 85 (271)
T PRK10163 28 IAILQYLEKS-------GGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS---Q----LGWWHIGLGV 85 (271)
T ss_pred HHHHHHHHhC-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCeEEecHHH
Confidence 3466677654 237999999999999 9999999999999999998641 1 4789998754
|
|
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.041 Score=49.22 Aligned_cols=59 Identities=20% Similarity=0.305 Sum_probs=47.8
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... + .++++.|||+++|+ +..-+.|+|..|+..||++++ ++ +++|++++..-
T Consensus 7 l~iL~~l~~~-----~--~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d---~~----~g~Y~Lg~~~~ 65 (246)
T COG1414 7 LAILDLLAEG-----P--GGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQD---PE----DGRYRLGPRLL 65 (246)
T ss_pred HHHHHHHHhC-----C--CCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEc---CC----CCcEeehHHHH
Confidence 5678888765 1 24679999999999 999999999999999999974 22 36899997643
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.046 Score=44.86 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
++.|+++||+..++ ++..|+++|..|...|+|+.. .|+ .+.|++.....
T Consensus 24 ~~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~-----rG~-~GGy~Lar~~~ 72 (150)
T COG1959 24 GPVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSV-----RGK-GGGYRLARPPE 72 (150)
T ss_pred CcccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEee-----cCC-CCCccCCCChH
Confidence 37999999999999 999999999999999999964 233 57888876543
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.017 Score=40.37 Aligned_cols=47 Identities=19% Similarity=0.103 Sum_probs=39.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..++..|-.. ++.|+.+||+.+|+ +...+.+.|+.|...|+++..
T Consensus 9 ~E~~vy~~Ll~~--------~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~ 55 (68)
T PF01978_consen 9 NEAKVYLALLKN--------GPATAEEIAEELGI----SRSTVYRALKSLEEKGLVERE 55 (68)
T ss_dssp HHHHHHHHHHHH--------CHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 345566666433 38999999999999 999999999999999999974
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.063 Score=46.55 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
..|+..|... ++.|+.+||+.+++ ++..+++.|+.|...|+|+........|+....|.+|+.+..+
T Consensus 4 ~~IL~~L~~~--------~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~ 70 (203)
T TIGR02702 4 EDILSYLLKQ--------GQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQ 70 (203)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhh
Confidence 3466777654 37999999999999 9999999999999999998641101233334457888776543
|
All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus. |
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.058 Score=44.99 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
+++|+++||+.+++ ++..+.++|..|...|+|... .|+ ++.|.+...
T Consensus 24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~-----rG~-~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSV-----RGP-GGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCC-CCCeeccCC
Confidence 48999999999999 999999999999999999963 122 466887654
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.081 Score=36.54 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.++|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 24 ~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGL----TRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 37999999999999 99999999999999999996
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.16 Score=45.14 Aligned_cols=101 Identities=17% Similarity=0.102 Sum_probs=66.8
Q ss_pred CC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC------------CCCeEEeccCCCC------CCC
Q 017495 205 FD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF------------PGVEHVGGDMFEN------VPR 265 (370)
Q Consensus 205 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~------------~rv~~~~~D~~~~------~p~ 265 (370)
++ ...+||++|+|+|..++..+. .....++.-|.|.+++..... ..+.+...+-..+ .|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 467899999999955554444 467788888876665543221 1344444444331 233
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|+|+.+.++++-. .-..++..++..|..++.+++.-....
T Consensus 162 ~~DlilasDvvy~~~--~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE--SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred cccEEEEeeeeecCC--cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 59999999998733 346788888899999996666555544
|
|
| >PRK11050 manganese transport regulator MntR; Provisional | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.28 Score=40.40 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=44.9
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
|+..+..+ ++.+..+||+.+++ ++..+.++++.|...|+|.... ...+.+|+.+..+
T Consensus 42 I~~~l~~~--------~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~--------~~~v~LT~~G~~l 98 (152)
T PRK11050 42 IADLIAEV--------GEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP--------YRGVFLTPEGEKL 98 (152)
T ss_pred HHHHHHhc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec--------CCceEECchHHHH
Confidence 55566654 37999999999999 9999999999999999998521 2457777766544
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.06 Score=48.74 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=48.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|++.|... ++++++.|||+.+|+ +..-+.|+|+.|+..|+++++. . ++.|++++....+.
T Consensus 14 l~iL~~l~~~-------~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~---~----~~~Y~Lg~~~~~l~ 75 (263)
T PRK09834 14 LMVLRALNRL-------DGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA---S----DDSFRLTLKVRQLS 75 (263)
T ss_pred HHHHHHHHhc-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec---C----CCcEEEcHHHHHHH
Confidence 4566777654 136999999999999 9999999999999999999642 1 46799997654333
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.091 Score=48.28 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=52.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~ 261 (370)
..++++.+. ..+...++|.-+|.|+.+..+++.+|+.+++++|. |.+++.+++. .|+.++.+++.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456676665 55677999999999999999999988889999998 8888776542 366776666643
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.099 Score=40.93 Aligned_cols=69 Identities=10% Similarity=0.106 Sum_probs=52.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... +++|..+||+.+++ +...+.+.++-|...|+|+... ++.|.+ .-.+.+|+.+..
T Consensus 29 ~q~~iL~~l~~~--------~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~-~~~D~R-~~~v~LT~~G~~ 94 (118)
T TIGR02337 29 QQWRILRILAEQ--------GSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLK-ASNDQR-RVYISLTPKGQA 94 (118)
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHH
Confidence 444577777765 37999999999999 9899999999999999999742 222221 235888888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 95 ~~~ 97 (118)
T TIGR02337 95 LYA 97 (118)
T ss_pred HHH
Confidence 554
|
This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate. |
| >PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.046 Score=37.37 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|++.|... ++|++..|||+.+|+ +....+++|..|+..|.++..
T Consensus 4 ~Il~~i~~~-------~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~ 48 (62)
T PF04703_consen 4 KILEYIKEQ-------NGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERS 48 (62)
T ss_dssp CHHHHHHHH-------TS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEE
T ss_pred HHHHHHHHc-------CCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 456666662 148999999999999 999999999999999999864
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.035 Score=47.27 Aligned_cols=95 Identities=20% Similarity=0.097 Sum_probs=61.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC------CCCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN------VPRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~------~p~~-D~i~~ 271 (370)
...++||+=||+|.++.+.+.+. -.+++.+|. +..+...+++ +++.++..|.... .... |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999888764 347888887 6666655542 4588888997652 1233 99988
Q ss_pred cccccCCChhHHHHHHHHHH--HhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e 304 (370)
-==... .. ....+|..+. ..|+++|.+++-.
T Consensus 121 DPPY~~-~~-~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 121 DPPYAK-GL-YYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp --STTS-CH-HHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCCccc-ch-HHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 422211 11 1356777776 7888888666533
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.12 Score=38.74 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=49.0
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++.+..+|++.+++ ++..+.+.|+-|+..|+|+... + ..++....|.+|+.+..+
T Consensus 12 ~~~il~~l~~~--------~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~-~-~~~~r~~~~~lT~~g~~~ 77 (101)
T smart00347 12 QFLVLRILYEE--------GPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLP-S-PEDRRSVLVSLTEEGREL 77 (101)
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecC-C-CCCCCeEEEEECHhHHHH
Confidence 45667777665 37999999999999 9999999999999999998642 1 111123457777776544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 78 ~ 78 (101)
T smart00347 78 I 78 (101)
T ss_pred H
Confidence 4
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.21 Score=48.43 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=82.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h----hHHHhCCCCCCCeEEeccCCCC---CCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P----HVLANAPSFPGVEHVGGDMFEN---VPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~D~~~~---~p~~-D~i~~~~vL 275 (370)
....+.|+|..+|.|+|+.+|.+. | +- +... | ..+...-.+ ...=+-.|..++ +|.. |++...++|
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~-VW--VMNVVP~~~~ntL~vIydR-GLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P-VW--VMNVVPVSGPNTLPVIYDR-GLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C-ce--EEEecccCCCCcchhhhhc-ccchhccchhhccCCCCcchhheehhhhh
Confidence 456789999999999999999763 3 22 2221 2 211111111 122223344443 4555 999999999
Q ss_pred cCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 276 HGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 276 h~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
..+.+. +...+|-++-|.|+|||.++|.|... ...+++.+++.-.++..
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~------------------------------vl~~v~~i~~~lrW~~~ 487 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD------------------------------VLEKVKKIAKSLRWEVR 487 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEeccHH------------------------------HHHHHHHHHHhCcceEE
Confidence 887654 45689999999999999999966431 13356666666666644
Q ss_pred eEEecCC---CeeEEEEeC
Q 017495 355 EIVCCAY---NSWVMEFHK 370 (370)
Q Consensus 355 ~~~~~~~---~~~~~e~~k 370 (370)
.+....+ ..-|+.|+|
T Consensus 488 ~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 488 IHDTEDGPDGPEKILICQK 506 (506)
T ss_pred EEecCCCCCCCceEEEEEC
Confidence 3333222 456787776
|
; GO: 0008168 methyltransferase activity |
| >PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.1 Score=38.69 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=47.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
|+..|..+ +....||.+.+ ++ ++..|.+-|+.|...|++++.... . .+..-.|++|+.++.+..
T Consensus 10 IL~~l~~g---------~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~-~-~p~~v~Y~LT~~G~~l~~ 74 (90)
T PF01638_consen 10 ILRALFQG---------PMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYP-E-VPPRVEYSLTEKGKELLP 74 (90)
T ss_dssp HHHHHTTS---------SEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEES-S-SSSEEEEEE-HHHHHHHH
T ss_pred HHHHHHhC---------CCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhccccc-C-CCCCCccCCCcCHHHHHH
Confidence 45556655 89999999999 89 999999999999999999874211 1 111346999999886663
|
The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.046 Score=37.21 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=38.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..++..|... + +.++|+.+||+.+++ ++..+.+.++.|+..|+|+..
T Consensus 7 q~~vL~~l~~~-----~-~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~ 54 (62)
T PF12802_consen 7 QFRVLMALARH-----P-GEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERE 54 (62)
T ss_dssp HHHHHHHHHHS-----T-TSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHC-----C-CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 34556666665 1 113899999999999 999999999999999999974
|
... |
| >PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.068 Score=35.25 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
.-.+|.+|.+.|-||. +. ..|.+|||+.+|+ ++..+...||-.
T Consensus 5 Q~e~L~~A~~~GYfd~-PR----------~~tl~elA~~lgi----s~st~~~~LRra 47 (53)
T PF04967_consen 5 QREILKAAYELGYFDV-PR----------RITLEELAEELGI----SKSTVSEHLRRA 47 (53)
T ss_pred HHHHHHHHHHcCCCCC-CC----------cCCHHHHHHHhCC----CHHHHHHHHHHH
Confidence 3468999999999998 43 3799999999999 888888888754
|
This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.67 Score=44.86 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=71.9
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-----CCCCCCeEEeccCCC-CCCCC--CEEEecccccCCC
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-----PSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWT 279 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-----~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~ 279 (370)
-+++-+|||...+...+-+. ..-.++.+|. +.+++.. +.+....+...|+.. .++.. |+|+....|+++-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 39999999999888877664 2234555565 4344332 233568889999988 66643 9999999998853
Q ss_pred hhH--------HHHHHHHHHHhCCCCcEEEEEeec--CCCC
Q 017495 280 DEH--------CLKLLKNCWEALPENGKVIIVESI--LPLV 310 (370)
Q Consensus 280 d~~--------~~~iL~~~~~~L~pgG~lli~e~~--~~~~ 310 (370)
.++ +...+..++++|+|||+++.+... .+..
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl~~~vp~~ 169 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTLVQVVPQG 169 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEeeeeccCC
Confidence 322 235689999999999999998884 4544
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.11 Score=47.62 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMF 260 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~ 260 (370)
+.++++.+. ..+...++|.--|.|+.+.++++++|+.+++++|. |.+++.+++. +|+.++.++|.
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 456777776 66778999999999999999999999999999998 9888766542 56777666654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >COG4189 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.12 Score=44.60 Aligned_cols=57 Identities=14% Similarity=0.234 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 30 AVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 30 ~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-..++|.+.+++.+++.|... +|+.+.|||+++|+ ++.-+..-+..|+.+|+++..
T Consensus 14 ~dv~kalaS~vRv~Il~lL~~k--------~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~ 70 (308)
T COG4189 14 LDVLKALASKVRVAILQLLHRK--------GPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE 70 (308)
T ss_pred chHHHHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence 4456788999999999999987 48999999999999 999999999999999999964
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.087 Score=48.04 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=67.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC-----CC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP-----RG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p-----~~-D~i~~ 271 (370)
...+|||+=|=||.++.+.+.. .-.+++.+|. ...++.++++ .+++++..|+++... .. |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 4689999999999999987652 3347899998 7777766542 578999999987221 12 99988
Q ss_pred c---ccccCCC-hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 272 K---WMLHGWT-DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~---~vLh~~~-d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
- +.=..+. ..+-.++++.+.+.|+|||.|+++..
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc 239 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC 239 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 1 1101111 12445789999999999999887544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG3355 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.12 Score=40.53 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=39.2
Q ss_pred hcChHHHHh-hcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccc
Q 017495 41 ELNVIDIIS-AASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSL 99 (370)
Q Consensus 41 ~lglfd~L~-~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~ 99 (370)
+..+|.+|- .. +|.|+++||+.++. +...+.+-|+-|...|++.+.+
T Consensus 29 Dv~v~~~LL~~~--------~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek 76 (126)
T COG3355 29 DVEVYKALLEEN--------GPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK 76 (126)
T ss_pred HHHHHHHHHhhc--------CCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence 445566654 33 49999999999999 9999999999999999999753
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.082 Score=42.58 Aligned_cols=48 Identities=13% Similarity=0.190 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++|.++||+.+++ ++..++++|..|...|++... . |+ .+.|.++...
T Consensus 24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~--~---G~-~Ggy~l~~~~ 71 (135)
T TIGR02010 24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSV--R---GP-GGGYQLGRPA 71 (135)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEE--e---CC-CCCEeccCCH
Confidence 38999999999999 999999999999999999853 1 21 3568776543
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1 Score=42.63 Aligned_cols=104 Identities=17% Similarity=0.116 Sum_probs=70.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC---CCEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR---GDAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~---~D~i 269 (370)
..++.+|||..++.|.=+.++++..++ ..++.+|. +.-+...+.+ .++..+..|... ..+. .|.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 567799999999999999999999876 45588886 5444433321 335666666543 1221 3666
Q ss_pred Ee------c-------ccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 270 FL------K-------WMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 270 ~~------~-------~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
++ . .+...+...+. .++|..+.+.|||||.|+-......
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence 55 1 23344444432 3789999999999999998877664
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.089 Score=50.94 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=67.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--C-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--N-VP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~-~p 264 (370)
+....+.+. ..+..+++|+=||.|.++..|++ ...++++++. ++.++.++++ ++++|+.+|..+ + +.
T Consensus 282 ~~~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~ 358 (432)
T COG2265 282 YETALEWLE-LAGGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW 358 (432)
T ss_pred HHHHHHHHh-hcCCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc
Confidence 334444444 55678999999999999999996 4457888887 8888777653 569999999887 2 21
Q ss_pred --CC-CEEEecccccCCChhHHH-HHHHHHHHhCCCCcEEEEE
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCL-KLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~-~iL~~~~~~L~pgG~lli~ 303 (370)
.. |+|+. +-|..-+. .+++.+ ..++|-..++|.
T Consensus 359 ~~~~~d~Vvv-----DPPR~G~~~~~lk~l-~~~~p~~IvYVS 395 (432)
T COG2265 359 EGYKPDVVVV-----DPPRAGADREVLKQL-AKLKPKRIVYVS 395 (432)
T ss_pred ccCCCCEEEE-----CCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence 12 88876 23333333 445544 445776777773
|
|
| >PRK03902 manganese transport transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.17 Score=41.15 Aligned_cols=50 Identities=22% Similarity=0.136 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.++++||+.+++ ++..+.+.|+.|...|+|.... .+.|.+|+.+..+.
T Consensus 21 ~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~--------~~~i~LT~~G~~~a 70 (142)
T PRK03902 21 GYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTPKGKKIG 70 (142)
T ss_pred CCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEec--------CceEEECHHHHHHH
Confidence 47899999999999 9999999999999999998521 36689998886543
|
|
| >PRK11512 DNA-binding transcriptional repressor MarR; Provisional | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.57 Score=38.02 Aligned_cols=66 Identities=15% Similarity=0.099 Sum_probs=48.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
..++..|... +++|..+||+.+++ ++..+.++++-|+..|+|+... +++|++ .....+|+.+..+.
T Consensus 43 ~~vL~~l~~~--------~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~-~~~DrR-~~~l~LT~~G~~~~ 108 (144)
T PRK11512 43 FKVLCSIRCA--------ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTSGAAIC 108 (144)
T ss_pred HHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CcccCC-eeEeEEChhHHHHH
Confidence 3456666554 37999999999999 9999999999999999999742 223322 23356677666544
|
|
| >PRK11920 rirA iron-responsive transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.11 Score=42.90 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.+++..+||+..++ ++..|+++|..|...|+|+.. .|+ .+.|.+....
T Consensus 23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~-----rG~-~GGy~La~~p 70 (153)
T PRK11920 23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETV-----RGR-NGGVRLGRPA 70 (153)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeeecCCH
Confidence 37899999999999 999999999999999999964 233 4778876543
|
|
| >PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.07 Score=31.10 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.3
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
|+|-.|||+.+|+ .+.-++|.|..|...|++
T Consensus 2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI 32 (32)
T ss_dssp E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence 5889999999999 999999999999999875
|
These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B .... |
| >COG4190 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.15 Score=39.90 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=45.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.+-+=-.+.|+..+++. +|.|+.|+|+..|- +...+.|-|+.|+..|++...
T Consensus 59 a~vLsp~nleLl~~Ia~~--------~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe 111 (144)
T COG4190 59 ARVLSPRNLELLELIAQE--------EPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE 111 (144)
T ss_pred HHHhChhHHHHHHHHHhc--------CcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence 344445667788888876 59999999999999 999999999999999999973
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.19 Score=47.10 Aligned_cols=109 Identities=17% Similarity=0.349 Sum_probs=74.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh---hh-HHHhCC------------CCCCCeEEeccCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL---PH-VLANAP------------SFPGVEHVGGDMF 260 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~---p~-~~~~a~------------~~~rv~~~~~D~~ 260 (370)
.+.+.+. ..+.....|+|+|.|+....++......+-+++.+ |. +..... +...++.+.+++.
T Consensus 183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 4444554 66778999999999999988776544444444442 22 221111 1245888999998
Q ss_pred CC------CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 261 EN------VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 261 ~~------~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.+ ++++++|+++++.. ++ +...=+.++..-+++|-+++-.++..+.
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp-~L~lr~~eil~~ck~gtrIiS~~~L~~r 313 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DP-ELKLRSKEILQKCKDGTRIISSKPLVPR 313 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CH-HHHHhhHHHHhhCCCcceEecccccccc
Confidence 73 34569999999875 34 3344455899999999999999988873
|
|
| >COG4742 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.15 Score=45.40 Aligned_cols=68 Identities=9% Similarity=0.154 Sum_probs=59.8
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
-.++....|.+|+-.|.++ |+|.+||-..+++ ++..+..-++-|...|++.+. ++.|+
T Consensus 7 ~~if~SekRk~lLllL~eg---------Pkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~---------~~~Y~ 64 (260)
T COG4742 7 DLLFLSEKRKDLLLLLKEG---------PKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE---------GDRYS 64 (260)
T ss_pred HHHHccHHHHHHHHHHHhC---------CCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec---------CCEEE
Confidence 3456677889999999997 9999999999999 999999999999999999963 58999
Q ss_pred cchhhhhhhc
Q 017495 113 AAPICKFLIK 122 (370)
Q Consensus 113 ~~~~~~~l~~ 122 (370)
+|..+..++.
T Consensus 65 LS~~G~iiv~ 74 (260)
T COG4742 65 LSSLGKIIVE 74 (260)
T ss_pred ecchHHHHHH
Confidence 9999987764
|
|
| >PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.14 Score=34.42 Aligned_cols=42 Identities=12% Similarity=0.310 Sum_probs=37.8
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|... +.+++++||+.+++ ++.-++|=|..|+..|++..
T Consensus 5 Il~~l~~~--------~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r 46 (57)
T PF08220_consen 5 ILELLKEK--------GKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKR 46 (57)
T ss_pred HHHHHHHc--------CCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 56677765 48999999999999 99999999999999999986
|
This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular |
| >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.13 Score=44.18 Aligned_cols=51 Identities=29% Similarity=0.397 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+.+.|++|+|+++|+ +.--.||.|.+|++.|+++..-.-|.-|+....|..
T Consensus 171 ~~~~Taeela~~~gi----SRvTaRRYLeyl~~~~~l~a~i~yG~vGRP~r~Y~~ 221 (224)
T COG4565 171 DQELTAEELAQALGI----SRVTARRYLEYLVSNGILEAEIHYGKVGRPERRYRL 221 (224)
T ss_pred CCccCHHHHHHHhCc----cHHHHHHHHHHHHhcCeeeEEeeccccCCcceeeec
Confidence 358999999999999 999999999999999999864333444444555544
|
|
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.12 Score=41.34 Aligned_cols=48 Identities=21% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+++|.++||+.+++ ++..++++|+.|...|+|.... |+ ++.|.++...
T Consensus 24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~-----g~-~ggy~l~~~~ 71 (132)
T TIGR00738 24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR-----GP-GGGYRLARPP 71 (132)
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc-----CC-CCCccCCCCH
Confidence 38999999999999 9999999999999999998521 11 3467776443
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PRK06474 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.17 Score=42.78 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccce
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVY 111 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 111 (370)
..+|.--.++.|++.|... + .+.|+.+|++.+ ++ +..-+.|.|+.|+..|+|+........|..+..|
T Consensus 5 ~~~La~p~R~~Il~~L~~~-----~--~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y 73 (178)
T PRK06474 5 AEILMHPVRMKICQVLMRN-----K--EGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYY 73 (178)
T ss_pred HHhhCCHHHHHHHHHHHhC-----C--CCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEE
Confidence 3456667788899999775 1 259999999999 67 8888999999999999999753111011224567
Q ss_pred ecchhh
Q 017495 112 GAAPIC 117 (370)
Q Consensus 112 ~~~~~~ 117 (370)
+.+...
T Consensus 74 ~~~~~~ 79 (178)
T PRK06474 74 AINEED 79 (178)
T ss_pred Eeccce
Confidence 777654
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.13 Score=49.80 Aligned_cols=56 Identities=20% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC
Q 017495 204 GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE 261 (370)
Q Consensus 204 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~ 261 (370)
+.+....++|+-||||.++..+++. -.+++++.+ |+.++.|+.+ .+.+|++|-.++
T Consensus 380 ~l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 380 GLPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 3677899999999999999999884 457888876 8888877653 578999994444
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.82 Score=43.14 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=71.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC---------------------------------------eEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI---------------------------------------KGI 235 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~ 235 (370)
+..++..- +|.+...++|-=||+|+++++.+...+++ .++
T Consensus 180 AaAil~la-gw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~ 258 (381)
T COG0116 180 AAAILLLA-GWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIY 258 (381)
T ss_pred HHHHHHHc-CCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEE
Confidence 34444433 48777899999999999999988777532 266
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC-C-CCEEEec--ccccCCChhH-H----HHHHHHHHHhCCCC
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP-R-GDAIFLK--WMLHGWTDEH-C----LKLLKNCWEALPEN 297 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~-~D~i~~~--~vLh~~~d~~-~----~~iL~~~~~~L~pg 297 (370)
++|+ +.+++-|+.+ +.|.|.++|+.. ..+ + .|+|+++ +-.- +.++. + ..+.+.+++.++.-
T Consensus 259 G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~w 337 (381)
T COG0116 259 GSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAGW 337 (381)
T ss_pred EecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcCC
Confidence 8998 8888877753 569999999987 333 3 3888873 1211 12221 1 24455666666666
Q ss_pred cEEEEEe
Q 017495 298 GKVIIVE 304 (370)
Q Consensus 298 G~lli~e 304 (370)
++.++..
T Consensus 338 s~~v~tt 344 (381)
T COG0116 338 SRYVFTT 344 (381)
T ss_pred ceEEEEc
Confidence 6777643
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.57 Score=37.78 Aligned_cols=106 Identities=18% Similarity=0.250 Sum_probs=68.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
+.+++.+. ..+..+.+|+|+|.|....+.++.. -...+++++ |..+...+-+ .+++|...|+++ +.-+.
T Consensus 62 ~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy 139 (199)
T KOG4058|consen 62 ENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDY 139 (199)
T ss_pred HHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccccc
Confidence 34555555 4556899999999999888777643 356788887 6666554321 467888888887 55443
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.++++. + +.-...+-.+++.-|+.+.+++-.-+-+|.
T Consensus 140 ~~vviFg-a-----es~m~dLe~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 140 RNVVIFG-A-----ESVMPDLEDKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred ceEEEee-h-----HHHHhhhHHHHHhhCcCCCeEEEEecCCCc
Confidence 333321 1 112234455677788899999987776654
|
|
| >smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.23 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.++.+|++.+++ ++..+.+.|..|...|++..
T Consensus 14 ~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 14 KVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 7999999999999 99999999999999999985
|
|
| >PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.097 Score=35.25 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=37.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+++..
T Consensus 5 q~~iL~~l~~~--------~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~ 50 (59)
T PF01047_consen 5 QFRILRILYEN--------GGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERE 50 (59)
T ss_dssp HHHHHHHHHHH--------SSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEec
Confidence 33455556655 37999999999999 999999999999999999974
|
This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A .... |
| >PRK11014 transcriptional repressor NsrR; Provisional | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.16 Score=41.13 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.+.+..+||+.+++ ++..+++.|..|...|+++.. .|+ .+.|.+..
T Consensus 24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~-----~G~-~GG~~l~~ 69 (141)
T PRK11014 24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAV-----RGK-NGGIRLGK 69 (141)
T ss_pred CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEe-----cCC-CCCeeecC
Confidence 47899999999999 999999999999999999963 232 35676653
|
|
| >smart00344 HTH_ASNC helix_turn_helix ASNC type | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.18 Score=38.68 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=40.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 4 ~D~~il~~L~~~--------~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~ 49 (108)
T smart00344 4 IDRKILEELQKD--------ARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKG 49 (108)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeec
Confidence 456788888775 37999999999999 99999999999999999983
|
AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.28 Score=44.31 Aligned_cols=99 Identities=19% Similarity=0.260 Sum_probs=68.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCCCC--C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVPRG--D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p~~--D 267 (370)
.+.+.++|-||+|.|.+++...+. +.+. +..+|. ..+++..+++ .+|.+..||-+. ..+++ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999988886 6653 566676 5566654432 579999998876 33343 8
Q ss_pred EEEecccccCCChhHH----HHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHC----LKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~----~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|+.-.- +.--+.+ ..+...+.++|||||++++..-+
T Consensus 198 Vii~dss--dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec 238 (337)
T KOG1562|consen 198 VIITDSS--DPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC 238 (337)
T ss_pred EEEEecC--CccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence 8876321 1111122 35677788999999999987643
|
|
| >COG1321 TroR Mn-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.31 Score=40.16 Aligned_cols=51 Identities=18% Similarity=0.118 Sum_probs=44.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
++....+||+.+++ +|.-+..+++-|...|++.+.+ .+.+.+|+.++.+..
T Consensus 23 ~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~--------y~gi~LT~~G~~~a~ 73 (154)
T COG1321 23 GFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP--------YGGVTLTEKGREKAK 73 (154)
T ss_pred CcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec--------CCCeEEChhhHHHHH
Confidence 48999999999999 9999999999999999999842 477999988875553
|
|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.2 Score=34.10 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++++..+||+.+++ .+.-+..+++-|...|+++..
T Consensus 21 ~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~ 55 (60)
T PF01325_consen 21 GPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE 55 (60)
T ss_dssp SSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence 48999999999999 999999999999999999963
|
The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A .... |
| >PRK03573 transcriptional regulator SlyA; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.5 Score=35.44 Aligned_cols=56 Identities=14% Similarity=0.074 Sum_probs=42.1
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.|..+||+.+++ ++..+.++++-|+..|+|+..+ +++|.+ .-...+|+.++.+..
T Consensus 46 ~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~~~~ 101 (144)
T PRK03573 46 EQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQT-CASDRR-AKRIKLTEKAEPLIS 101 (144)
T ss_pred CCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeec-CCCCcC-eeeeEEChHHHHHHH
Confidence 5899999999999 9999999999999999999742 223321 233567777765443
|
|
| >TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.42 Score=36.85 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.+..+||+.+++ ++..+.++++.|+..|+|.+.+ .++|.+ .-...+|+.+..+.
T Consensus 42 ~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~-~~~D~R-~~~i~lT~~G~~~~ 97 (109)
T TIGR01889 42 GKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKER-SEDDER-KVIISINKEQRSKI 97 (109)
T ss_pred CcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccC-CcccCC-eEEEEECHHHHHHH
Confidence 47999999999999 9999999999999999999742 223221 12255666665443
|
This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047. |
| >TIGR00122 birA_repr_reg BirA biotin operon repressor domain | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.23 Score=34.75 Aligned_cols=44 Identities=11% Similarity=0.243 Sum_probs=38.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++.++..|.++ +.+..+||+.+++ +...+++.++.|.+.|+...
T Consensus 2 ~~~il~~L~~~---------~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~ 45 (69)
T TIGR00122 2 PLRLLALLADN---------PFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVL 45 (69)
T ss_pred hHHHHHHHHcC---------CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEE
Confidence 34567778875 7899999999999 99999999999999999654
|
This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value. |
| >TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.23 Score=39.65 Aligned_cols=34 Identities=21% Similarity=0.213 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++.++.+||+++++ ++..+.++|+.|...|++..
T Consensus 24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~ 57 (130)
T TIGR02944 24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTS 57 (130)
T ss_pred CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEe
Confidence 48999999999999 99999999999999999985
|
The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. |
| >TIGR00373 conserved hypothetical protein TIGR00373 | Back alignment and domain information |
|---|
Probab=91.63 E-value=0.36 Score=40.00 Aligned_cols=45 Identities=11% Similarity=-0.009 Sum_probs=39.1
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|+++|-.. +.+|-++||+.+|+ +..-++++|..|...|++...
T Consensus 17 v~Vl~aL~~~--------~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~ 61 (158)
T TIGR00373 17 GLVLFSLGIK--------GEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK 61 (158)
T ss_pred HHHHHHHhcc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence 4577887754 38999999999999 999999999999999999753
|
This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain. |
| >smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.31 Score=32.50 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=31.4
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..+ |..+||+.+++ +...+++.|+.|...|++..
T Consensus 18 ~~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~ 52 (60)
T smart00345 18 DKLPSERELAAQLGV----SRTTVREALSRLEAEGLVQR 52 (60)
T ss_pred CcCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 356 89999999999 99999999999999999985
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.59 Score=40.65 Aligned_cols=94 Identities=22% Similarity=0.319 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC----C-C-C---eEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY----P-C-I---KGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~----p-~-~---~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p-- 264 (370)
+.+..|++|+....|.++.-|.++. + . . +++.+|+..|. ..+.|.-..+|+..+ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma----PI~GV~qlq~DIT~~stae~Ii~hfgge 114 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA----PIEGVIQLQGDITSASTAEAIIEHFGGE 114 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC----ccCceEEeecccCCHhHHHHHHHHhCCC
Confidence 4567899999999999999888874 2 1 1 37888984442 225688889998863 11
Q ss_pred CCCEEEec-----ccccCCChh----HHHHHHHHHHHhCCCCcEEEE
Q 017495 265 RGDAIFLK-----WMLHGWTDE----HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 265 ~~D~i~~~-----~vLh~~~d~----~~~~iL~~~~~~L~pgG~lli 302 (370)
.+|+|++- --||++++= -....|.-...+|+|||.++-
T Consensus 115 kAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 115 KADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred CccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 23999984 357775532 234667777889999999875
|
|
| >smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.38 Score=32.47 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=32.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|..+|++.+++ +...+.+.|+.|...|++...
T Consensus 10 ~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~ 43 (66)
T smart00418 10 ELCVCELAEILGL----SQSTVSHHLKKLREAGLVESR 43 (66)
T ss_pred CccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence 7999999999999 999999999999999999953
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.18 Score=47.62 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDM 259 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~ 259 (370)
+..+++.++ ..+. .|||+=||.|.++..|++.+ -++++++. +.+++.|+.+ ++++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 444555554 4334 89999999999999999855 47888887 8888777642 5788887664
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=91.16 E-value=4.7 Score=35.61 Aligned_cols=122 Identities=19% Similarity=0.066 Sum_probs=65.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC---C--CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR---G--DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~---~--D~i~~~~vL 275 (370)
.+++||=||=..- .+.+++-..+..+++++|+ ..+++..++. -.|+.+..|+..+.|+ + |+++.-=.
T Consensus 44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 4689999995544 4445555566678999997 6666544321 2499999999998875 2 99887322
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCH---HHHHHHHHhCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSK---KEYEALAKNSGFS 352 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~---~e~~~ll~~aGf~ 352 (370)
++.+-...+|.+..++||.-|.....-....+ .+. -++++.+.+.||.
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~---------------------------~s~~~~~~~Q~~l~~~gl~ 172 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKGEGCAGYFGFTHKE---------------------------ASPDKWLEVQRFLLEMGLV 172 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-----------------------------HHHHHHHHHHHHTS--E
T ss_pred --CCHHHHHHHHHHHHHHhCCCCceEEEEEecCc---------------------------CcHHHHHHHHHHHHHCCcC
Confidence 33456779999999999966633332222111 111 2457777788888
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
+..+++-
T Consensus 173 i~dii~~ 179 (243)
T PF01861_consen 173 ITDIIPD 179 (243)
T ss_dssp EEEEEEE
T ss_pred HHHHHhh
Confidence 8777764
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PRK15431 ferrous iron transport protein FeoC; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.39 Score=34.21 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=37.0
Q ss_pred HHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 45 IDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 45 fd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
=|.|... +-.++.+||..+++ +++.++.+|..++..|-+++.
T Consensus 8 Rd~l~~~--------gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv 49 (78)
T PRK15431 8 RDLLALR--------GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_pred HHHHHHc--------CcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 3566665 48999999999999 999999999999999999964
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.14 Score=41.30 Aligned_cols=103 Identities=23% Similarity=0.245 Sum_probs=62.6
Q ss_pred eEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCC-C-CEEEecccccCCCh---------hHHHHHHHHH
Q 017495 233 KGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPR-G-DAIFLKWMLHGWTD---------EHCLKLLKNC 290 (370)
Q Consensus 233 ~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~-~-D~i~~~~vLh~~~d---------~~~~~iL~~~ 290 (370)
++++||+ +++++.++++ +||+++..+-.. ..++ . |+++++. -++|. +.-...|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5788998 8888877642 578888777655 2344 3 7777642 23332 2346889999
Q ss_pred HHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc--cCHHHHHHHHHhCCCCcceEEecC
Q 017495 291 WEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE--RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 291 ~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+.|+|||.+.|+-..-.+ +|.+ ....+|.+-|...-|.+.....+.
T Consensus 79 l~lL~~gG~i~iv~Y~GH~-----------------------gG~eE~~av~~~~~~L~~~~~~V~~~~~~N 127 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPGHP-----------------------GGKEESEAVEEFLASLDQKEFNVLKYQFIN 127 (140)
T ss_dssp HHHEEEEEEEEEEE--STC-----------------------HHHHHHHHHHHHHHTS-TTTEEEEEEEESS
T ss_pred HHhhccCCEEEEEEeCCCC-----------------------CCHHHHHHHHHHHHhCCcceEEEEEEEccC
Confidence 9999999999997654332 1111 123455555566778887777764
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG1733 Predicted transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=91.04 E-value=1 Score=35.44 Aligned_cols=79 Identities=11% Similarity=0.119 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+++..++.+.+-|..-+|+...+ + +....||.+.++ + ++..|.+-|+.|+..|++.+
T Consensus 12 ~~~~~l~~ig~kW~~lIl~~L~~---------g---------~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R 69 (120)
T COG1733 12 PVEEALEVIGGKWTLLILRDLFD---------G---------PKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVER 69 (120)
T ss_pred CHHHHHHHHcCccHHHHHHHHhc---------C---------CCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEe
Confidence 46777788888887777765433 5 789999999998 9 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. .++ -+..-.|++|+.++.|.
T Consensus 70 ~~-~~~-~PprveY~LT~~G~~L~ 91 (120)
T COG1733 70 VV-YPE-EPPRVEYRLTEKGRDLL 91 (120)
T ss_pred ee-cCC-CCceeEEEEhhhHHHHH
Confidence 41 111 12245688888876554
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.1 Score=42.70 Aligned_cols=44 Identities=20% Similarity=0.385 Sum_probs=32.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------CCCeEEEeehh
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------PCIKGISFDLP 240 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~p 240 (370)
..|++.+. -.....|+|+|.|.|.--..|.+.+ |.+++|+++.|
T Consensus 100 qaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~ 150 (374)
T PF03514_consen 100 QAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPP 150 (374)
T ss_pred HHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCC
Confidence 35666666 4467899999999996655555553 67889999873
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.092 Score=40.15 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=42.4
Q ss_pred CEEEecccc---c-CCChhHHHHHHHHHHHhCCCCcEEEEEeecC-CCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 DAIFLKWML---H-GWTDEHCLKLLKNCWEALPENGKVIIVESIL-PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 D~i~~~~vL---h-~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
|+|+|..|. | +|.|+....+++++++.|+|||+|++ |+-. ..-.... .......-.+ ..-...+++
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w~sY~~~~---~~~~~~~~n~-----~~i~lrP~~ 73 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPWKSYKKAK---RLSEEIRENY-----KSIKLRPDQ 73 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---HHHHHTTT---TS-HHHHHHH-----HH----GGG
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCcHHHHHHh---hhhHHHHhHH-----hceEEChHH
Confidence 777775542 2 35788889999999999999999887 3311 0000000 0000000000 111124567
Q ss_pred HHHHHHh--CCCCcceEEecC
Q 017495 342 YEALAKN--SGFSGLEIVCCA 360 (370)
Q Consensus 342 ~~~ll~~--aGf~~v~~~~~~ 360 (370)
+.+.|.+ .||+.++....+
T Consensus 74 F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 74 FEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp HHHHHTSTTT---EEEEE---
T ss_pred HHHHHHhcccceEEEEEcccC
Confidence 8888877 699988765553
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.24 Score=42.73 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=41.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE 261 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~ 261 (370)
....|+|.-||.|+.+.+++..+|- ++.+|. |.-+..++.+ +||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 4568999999999999999998775 455555 5555555543 699999999987
|
|
| >PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.32 Score=33.67 Aligned_cols=35 Identities=23% Similarity=0.203 Sum_probs=29.4
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|-|+.|||+.+|++ ++..+...|++|...|+|+..
T Consensus 25 ~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~ 59 (65)
T PF01726_consen 25 PPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD 59 (65)
T ss_dssp ---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred CCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence 55999999999993 499999999999999999963
|
The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.09 E-value=2.3 Score=36.13 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=60.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCC--CC--C--CCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFEN--VP--R--GDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~--~p--~--~D~i~~~ 272 (370)
...++||+=+|+|.++.+-+.+. -.+++.+|. ..+....++ ..++.++..|.... .. . .|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 46899999999999999988874 346777775 554444433 25678888887741 11 1 3999985
Q ss_pred cccc-CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 273 WMLH-GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 273 ~vLh-~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
==.+ .+-+.+...++-.-...|+|+|.+++-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 4433 1111111122222456799998887743
|
|
| >PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.64 Score=32.24 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=35.7
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCC-CcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPD-APFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~-~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|.+. +.|++..+|++.+..+... .+..+++.|++|...|++..
T Consensus 3 IL~~L~~~-------~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~ 50 (66)
T PF08461_consen 3 ILRILAES-------DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRK 50 (66)
T ss_pred HHHHHHHc-------CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCccc
Confidence 56677665 3699999999998652111 36899999999999997774
|
|
| >TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.53 Score=40.76 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=45.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.+..++..|... ++.+..+||+.+++ ++..+++.|..|...|+++... . ....|.+|+.
T Consensus 144 ~~~~IL~~l~~~--------g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~---~---r~~~~~lT~~ 202 (203)
T TIGR01884 144 EELKVLEVLKAE--------GEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKG---R---KGKRYSLTKL 202 (203)
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc---C---CccEEEeCCC
Confidence 345677777764 27899999999999 9999999999999999999641 0 1355777654
|
Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity. |
| >cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.66 Score=32.33 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=43.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+..++..+..+ +.+..+|++.+++ +...+.+.|+.|.+.|++.... .+ ....|..++
T Consensus 9 ~~~il~~l~~~---------~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~----~~-~~~~~~~~~ 65 (78)
T cd00090 9 RLRILRLLLEG---------PLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRR----EG-RRVYYSLTD 65 (78)
T ss_pred HHHHHHHHHHC---------CcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEE----ec-cEEEEEeCC
Confidence 34466666665 4899999999999 9999999999999999999631 11 135566664
|
ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.26 E-value=2.8 Score=39.18 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=64.6
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEecc---CCCCCCC-CCEEEecccccCC
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGD---MFENVPR-GDAIFLKWMLHGW 278 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D---~~~~~p~-~D~i~~~~vLh~~ 278 (370)
..+..+|+=+|.| .|.++.++++..- .+++++|. ++-.+.+++...-.++... ..+...+ .|+|+-.-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h--
Confidence 4466777777766 6788889999776 99999998 7777777766444444433 2222222 377776543 2
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+....+.|++||+++++-...
T Consensus 240 ------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 240 ------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred ------hhHHHHHHHHhcCCEEEEECCCC
Confidence 34677889999999999988763
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.10 E-value=0.88 Score=41.40 Aligned_cols=65 Identities=22% Similarity=0.247 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCe-EEEeeh-hhHHHhCCCC-----CCCeEEeccCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIK-GISFDL-PHVLANAPSF-----PGVEHVGGDMF 260 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~ 260 (370)
+.+.+..+. ..+....+|.-=|.|+.+..+++.+|... .+++|. |.+++.+++. +|+.++...|.
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 456667676 66779999999999999999999999775 999998 9999887752 46777666553
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.71 Score=43.98 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=52.3
Q ss_pred CCCeEEeccCCC---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 250 PGVEHVGGDMFE---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 250 ~rv~~~~~D~~~---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
++|+++.+++.+ ..|.+ |.+++..++..+++++..+.++.+.+.++|||++++-....+.
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 789999999887 34443 9999999999999999999999999999999999998776554
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
Probab=88.83 E-value=0.75 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.8
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
+++|.++||+.+++ +.+-+++-+..|...|+
T Consensus 14 ~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~ 44 (55)
T PF08279_consen 14 EPITAKELAEELGV----SRRTIRRDIKELREWGI 44 (55)
T ss_dssp TSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-
T ss_pred CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCC
Confidence 47999999999999 99999999999999993
|
The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A .... |
| >PRK10870 transcriptional repressor MprA; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.89 Score=38.37 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+++|..+||+.+++ ++..+.+++.-|+..|+|+... +++|++ .....+|+.++.+..
T Consensus 70 ~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~-~~~DrR-~~~v~LT~~G~~~~~ 126 (176)
T PRK10870 70 HSIQPSELSCALGS----SRTNATRIADELEKRGWIERRE-SDNDRR-CLHLQLTEKGHEFLR 126 (176)
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHHH
Confidence 47899999999999 9999999999999999999742 223321 234567777765553
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.74 E-value=3.1 Score=39.75 Aligned_cols=99 Identities=22% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEecc----CCC---CC-CC-C-CEEEec
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGD----MFE---NV-PR-G-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D----~~~---~~-p~-~-D~i~~~ 272 (370)
..+..+||.+|+|. |..+..+++.....+++.++. ++..+.+++.....++... +.+ .. +. + |+|+-.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~ 261 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDA 261 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEEC
Confidence 55678999999987 889999999886545788775 6666665543222222211 111 11 11 3 777553
Q ss_pred c---------------cccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 W---------------MLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~---------------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
- +|+-.++. ...++.+.+.|+|+|++++...
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred CCCcccccccccccccccccccCc--hHHHHHHHHHhccCCEEEEEcC
Confidence 2 12221222 4578889999999999999864
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK05638 threonine synthase; Validated | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.71 Score=45.17 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=48.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCC--CCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLP--TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~--~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
++.|+..|..+ +.+..||++.++ + ++..+++.|+.|...|+|+... ..|+ ...|++|+.++
T Consensus 373 r~~IL~~L~~~---------~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~---~~g~-~~~Y~Lt~~g~ 435 (442)
T PRK05638 373 KLEILKILSER---------EMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAY---RKGR-RVYYKLTEKGR 435 (442)
T ss_pred HHHHHHHHhhC---------CccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEee---cCCC-cEEEEECcHHH
Confidence 44567777765 799999999998 7 8899999999999999998531 1232 45699998876
Q ss_pred hh
Q 017495 119 FL 120 (370)
Q Consensus 119 ~l 120 (370)
.+
T Consensus 436 ~~ 437 (442)
T PRK05638 436 RL 437 (442)
T ss_pred HH
Confidence 43
|
|
| >PHA02943 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.49 E-value=0.74 Score=37.18 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=37.2
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+++.|..| ..|..|||+++|+ +....+-.|..|+..|.+.+.
T Consensus 15 eILE~Lk~G---------~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV 57 (165)
T PHA02943 15 KTLRLLADG---------CKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKV 57 (165)
T ss_pred HHHHHHhcC---------CccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEE
Confidence 356666443 7999999999999 999999999999999999974
|
|
| >cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators | Back alignment and domain information |
|---|
Probab=88.41 E-value=0.93 Score=30.81 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=29.8
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+||+.+++ +...+++.|..|...|+++.
T Consensus 26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~ 57 (66)
T cd07377 26 PSERELAEELGV----SRTTVREALRELEAEGLVER 57 (66)
T ss_pred CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 359999999999 99999999999999999985
|
This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is |
| >smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.83 Score=34.05 Aligned_cols=46 Identities=24% Similarity=0.216 Sum_probs=38.1
Q ss_pred HHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 64 ASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 64 ~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+||+.+++ ++..+.+.++.|...|+|...+ +..|.+|+.+..+.
T Consensus 2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~--------~~~~~lT~~g~~~~ 47 (96)
T smart00529 2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP--------YRGITLTEKGRRLA 47 (96)
T ss_pred HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC--------CCceEechhHHHHH
Confidence 4689999999 9999999999999999999631 24688888776544
|
iron dependent repressor |
| >PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B | Back alignment and domain information |
|---|
Probab=87.99 E-value=1.3 Score=35.76 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=54.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhh-HHHhCCCCCCCeEEeccCCCCCCC----C-CE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPH-VLANAPSFPGVEHVGGDMFENVPR----G-DA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~-~~~~a~~~~rv~~~~~D~~~~~p~----~-D~ 268 (370)
+.+.+..+.+. ..-|||+|=|.|..=-+|.+.+|+-.++++|..- +-.... -+.-.++.||+.+..|. + .+
T Consensus 18 L~~a~~~v~~~--~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp~~~-P~~~~~ilGdi~~tl~~~~~~g~~a 94 (160)
T PF12692_consen 18 LNWAAAQVAGL--PGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHPSST-PPEEDLILGDIRETLPALARFGAGA 94 (160)
T ss_dssp HHHHHHHTTT----S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-GGG----GGGEEES-HHHHHHHHHHH-S-E
T ss_pred HHHHHHHhcCC--CCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCCCCC-CchHheeeccHHHHhHHHHhcCCce
Confidence 34455555422 3689999999999999999999999999999521 111111 12346788888762221 1 33
Q ss_pred EEecccccCCChhHHHHHHH----HHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLK----NCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~----~~~~~L~pgG~lli~e~~~ 307 (370)
.+...=|-....+.-..... -+..+|.|||.++-..+..
T Consensus 95 ~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~ 137 (160)
T PF12692_consen 95 ALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY 137 (160)
T ss_dssp EEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred EEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence 33322222222232233333 3456788999888765544
|
|
| >PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.97 Score=39.42 Aligned_cols=52 Identities=13% Similarity=0.065 Sum_probs=42.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.+|..+||+.+++ ++..+.++|+.|...|+++... .+ ....+.+|+.+..+.
T Consensus 21 ~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~-~~----r~~~v~LTekG~~ll 72 (217)
T PRK14165 21 KISSSEFANHTGT----SSKTAARILKQLEDEGYITRTI-VP----RGQLITITEKGLDVL 72 (217)
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEE-cC----CceEEEECHHHHHHH
Confidence 6899999999999 9999999999999999998642 11 145688888776444
|
|
| >COG1497 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.85 Score=39.83 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh-hhhcCCCCCCCChhHHHHhh-
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLH- 138 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~- 138 (370)
.+.-.|||+.+|+ -++++...++-|+..|++++. | .++|..|..+. ++...- ..++.+....
T Consensus 25 ~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~------g--R~~Y~iTkkG~e~l~~~~----~dlr~f~~ev~ 88 (260)
T COG1497 25 RVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE------G--RGEYEITKKGAEWLLEQL----SDLRRFSEEVE 88 (260)
T ss_pred CCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec------C--CeeEEEehhHHHHHHHHH----HHHHHHHHHHH
Confidence 6899999999999 999999999999999999962 2 46899999885 444321 2244444433
Q ss_pred cChhHHHhhhhhHHH-HhcCCccc
Q 017495 139 HDKVFMESWYHLKDV-ILEGGIPF 161 (370)
Q Consensus 139 ~~~~~~~~~~~l~~~-l~~g~~~~ 161 (370)
..-.+...|..+++. ++.|...+
T Consensus 89 ~~l~~~~vw~AIA~edI~~Gd~V~ 112 (260)
T COG1497 89 LVLDYVMVWTAIAKEDIKEGDTVY 112 (260)
T ss_pred HHHhhHHHHHHhhHhhhccCCEEE
Confidence 112344677776655 55555543
|
|
| >PRK11179 DNA-binding transcriptional regulator AsnC; Provisional | Back alignment and domain information |
|---|
Probab=87.26 E-value=0.86 Score=37.48 Aligned_cols=46 Identities=7% Similarity=0.169 Sum_probs=41.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|..+ +..|..+||+++|+ ++..+.+=++.|.+.|++..
T Consensus 10 ~D~~Il~~Lq~d--------~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~ 55 (153)
T PRK11179 10 LDRGILEALMEN--------ARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITG 55 (153)
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 567788999876 48999999999999 99999999999999999983
|
|
| >cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators | Back alignment and domain information |
|---|
Probab=87.07 E-value=0.96 Score=35.07 Aligned_cols=51 Identities=25% Similarity=0.358 Sum_probs=39.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCC-CCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP-DAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~-~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.-|++.|... +.+.|+++|.+.+.-+.+ .+..-+.|.|+.|+..|++.+.
T Consensus 3 R~~Il~~l~~~-------~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~ 54 (116)
T cd07153 3 RLAILEVLLES-------DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREI 54 (116)
T ss_pred HHHHHHHHHhC-------CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 45578888764 248999999999832111 1788899999999999999974
|
Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. |
| >PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.1 Score=34.92 Aligned_cols=49 Identities=10% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..+...|.+.+... |.+|..+++..+|+ +...+.++++.|++.|-|..
T Consensus 10 r~eLk~rIvElVRe~--------GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 10 REELKARIVELVREH--------GRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHHHHHc--------CCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEe
Confidence 445677888888876 59999999999999 99999999999999999985
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=86.89 E-value=1.9 Score=44.54 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=55.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhC-------C-----CCeEEEeeh-h---hHHHhCC----------------------C
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRY-------P-----CIKGISFDL-P---HVLANAP----------------------S 248 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-p---~~~~~a~----------------------~ 248 (370)
+.-+|+|+|=|+|.......+.+ | .++++.++. | +.+..+. .
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999998777666544 3 367777774 3 1111110 0
Q ss_pred -------CC--CCeEEeccCCCCCC---C-CCEEEeccc-ccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 249 -------FP--GVEHVGGDMFENVP---R-GDAIFLKWM-LHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 249 -------~~--rv~~~~~D~~~~~p---~-~D~i~~~~v-Lh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
.. ++++..||+.+..+ . .|++++--. -..-|+--...+++.+++.++|||.+.-
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t 204 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT 204 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence 01 23456677665222 2 388776321 1111111224788999999999888874
|
|
| >PRK11169 leucine-responsive transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=86.63 E-value=0.84 Score=38.03 Aligned_cols=48 Identities=13% Similarity=0.191 Sum_probs=42.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
-..+..|+.+|... +..|..+||+++|+ ++..+.+=++-|...|+++.
T Consensus 13 D~~D~~IL~~Lq~d--------~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~ 60 (164)
T PRK11169 13 DRIDRNILNELQKD--------GRISNVELSKRVGL----SPTPCLERVRRLERQGFIQG 60 (164)
T ss_pred HHHHHHHHHHhccC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 34677889999876 48999999999999 99999999999999999983
|
|
| >TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain | Back alignment and domain information |
|---|
Probab=86.42 E-value=1.1 Score=33.60 Aligned_cols=33 Identities=18% Similarity=0.073 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|..|||+.+|+ ++..+.|.|+.|...|+|..
T Consensus 47 ~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r 79 (95)
T TIGR01610 47 RVTATVIAELTGL----SRTHVSDAIKSLARRRIIFR 79 (95)
T ss_pred ccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 7999999999999 99999999999999999995
|
This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins. |
| >PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=86.37 E-value=0.71 Score=31.66 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=31.1
Q ss_pred CCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+ +..+||+.+++ +..-+++-|+.|.+.|+++..
T Consensus 21 g~~lps~~~la~~~~v----sr~tvr~al~~L~~~g~i~~~ 57 (64)
T PF00392_consen 21 GDRLPSERELAERYGV----SRTTVREALRRLEAEGLIERR 57 (64)
T ss_dssp TSBE--HHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred CCEeCCHHHHHHHhcc----CCcHHHHHHHHHHHCCcEEEE
Confidence 3578 99999999999 999999999999999999863
|
The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A .... |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=5.9 Score=39.35 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=61.6
Q ss_pred CCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC--------------C--------
Q 017495 207 GLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE--------------N-------- 262 (370)
Q Consensus 207 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~--------------~-------- 262 (370)
++.+|+=+|+| .|..+...++.+. ..++++|. ++..+.++... .++...|..+ +
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslG-A~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~ 241 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMG-AEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL 241 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcC-CeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence 57899999999 6777777887765 48999998 88887776542 2222111110 1
Q ss_pred ----CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 ----VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ----~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
....|+++-..-...-+.+ ..+.+...+.|||||.++.+-.
T Consensus 242 ~~~~~~gaDVVIetag~pg~~aP--~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 242 FAEQAKEVDIIITTALIPGKPAP--KLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHhccCCCCEEEECCCCCcccCc--chHHHHHHHhcCCCCEEEEEcc
Confidence 0123998876544221112 2335999999999999887643
|
|
| >PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors | Back alignment and domain information |
|---|
Probab=85.57 E-value=0.82 Score=34.92 Aligned_cols=42 Identities=17% Similarity=0.251 Sum_probs=32.3
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|++.|... +.++-++||+.+++ ++.-++++|..|...|++..
T Consensus 18 Il~~L~~~--------~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~ 59 (105)
T PF02002_consen 18 ILDALLRK--------GELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSY 59 (105)
T ss_dssp HHHHHHHH----------B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EE
T ss_pred HHHHHHHc--------CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEE
Confidence 57777754 37999999999999 99999999999999999975
|
Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A. |
| >TIGR01321 TrpR trp operon repressor, proteobacterial | Back alignment and domain information |
|---|
Probab=85.32 E-value=3.3 Score=30.84 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
..+.+.||+..|-.+ ++|-.|||+.+|+ +...+.|+=+.|.
T Consensus 40 ~l~~R~~i~~~Ll~~---------~~tQrEIa~~lGi----S~atIsR~sn~lk 80 (94)
T TIGR01321 40 DLGDRIRIVNELLNG---------NMSQREIASKLGV----SIATITRGSNNLK 80 (94)
T ss_pred HHHHHHHHHHHHHhC---------CCCHHHHHHHhCC----ChhhhhHHHhhcc
Confidence 346799999988776 7999999999999 8888888777654
|
This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis. |
| >COG1522 Lrp Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=85.27 E-value=1.2 Score=36.35 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=41.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++.|... ++.+..+||+++|+ ++..+.+-++-|...|++..
T Consensus 9 ~D~~IL~~L~~d--------~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~ 54 (154)
T COG1522 9 IDRRILRLLQED--------ARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKG 54 (154)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceee
Confidence 456788888876 48999999999999 99999999999999999984
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=85.04 E-value=1.3 Score=43.98 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=51.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... ++++..+||+.+++ ++..+.++++.|.+.|+|+...+ ....|.+|+.++.
T Consensus 7 ~e~~vL~~L~~~--------~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~------~~~~i~LTeeG~~ 68 (489)
T PRK04172 7 NEKKVLKALKEL--------KEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER------VEEVYVLTEEGKK 68 (489)
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee------eEEEEEECHHHHH
Confidence 445667777664 37999999999999 99999999999999999996421 1467999999975
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 69 ~~~ 71 (489)
T PRK04172 69 YAE 71 (489)
T ss_pred HHH
Confidence 444
|
|
| >PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C | Back alignment and domain information |
|---|
Probab=84.42 E-value=0.85 Score=29.37 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=23.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
.++.++..+.++ .|..+||+.+|+ ++.-+.+|++.....|+
T Consensus 6 ~R~~ii~l~~~G----------~s~~~ia~~lgv----s~~Tv~~w~kr~~~~G~ 46 (50)
T PF13384_consen 6 RRAQIIRLLREG----------WSIREIAKRLGV----SRSTVYRWIKRYREEGL 46 (50)
T ss_dssp ----HHHHHHHT------------HHHHHHHHTS-----HHHHHHHHT-------
T ss_pred HHHHHHHHHHCC----------CCHHHHHHHHCc----CHHHHHHHHHHcccccc
Confidence 355566666664 899999999999 99999999998776663
|
|
| >PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 | Back alignment and domain information |
|---|
Probab=84.26 E-value=5.6 Score=29.76 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=49.0
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH--hhhcCCCc------ccCHHHHHHH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM--LAQTTGGR------ERSKKEYEAL 345 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~------~~t~~e~~~l 345 (370)
+|=|++.++..++|+.+...-+ |.+++.-. |.. . .+.+.. .-+++++. ...++++.+.
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~--~~~ifTfA--P~T-------~---~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~ 69 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTR--GSLIFTFA--PRT-------P---LLALMHAIGKLFPRPDRSPRIYPHREEDLRRA 69 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhcc--CcEEEEEC--CCC-------H---HHHHHHHHhccCCCCCCCCcEEEeCHHHHHHH
Confidence 4556788899999999887654 45655321 111 1 111111 11122322 2268999999
Q ss_pred HHhCCCCcceEEecCCCe--e-EEEEe
Q 017495 346 AKNSGFSGLEIVCCAYNS--W-VMEFH 369 (370)
Q Consensus 346 l~~aGf~~v~~~~~~~~~--~-~~e~~ 369 (370)
+.++||++.+...+..++ + ++|++
T Consensus 70 l~~~g~~~~r~~ris~gFY~S~llE~~ 96 (97)
T PF07109_consen 70 LAAAGWRIGRTERISSGFYISQLLEAV 96 (97)
T ss_pred HHhCCCeeeecccccCcChHHHHhhcc
Confidence 999999999887775433 2 55554
|
1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.20 E-value=4.9 Score=37.95 Aligned_cols=94 Identities=24% Similarity=0.206 Sum_probs=65.8
Q ss_pred CCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCC-C------CC--CCC-CEEEecccc
Q 017495 208 LKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMF-E------NV--PRG-DAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~-~------~~--p~~-D~i~~~~vL 275 (370)
..+|+=+||| .|.++..+++.+.-.++++.|. +.-++.+++..........-. . .. ..+ |+++=+.-
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G- 247 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG- 247 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence 3499999999 6788888999888889999998 888888876322121111111 0 11 123 88876544
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
....+..+.++++|||.+.++-....+
T Consensus 248 -------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 -------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 134788999999999999998876554
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=84.16 E-value=12 Score=31.89 Aligned_cols=103 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh--hhHHHhCCCCCCCeEEeccCCCC-CC-------CC--CEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL--PHVLANAPSFPGVEHVGGDMFEN-VP-------RG--DAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~D~~~~-~p-------~~--D~i~ 270 (370)
++..|.++|.-.|..+..++.. ....+++++|+ -..-..+++.++|.|++++-.++ .. .. -+.+
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv 148 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV 148 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence 5789999999999887776554 23467777764 22223344457899999998773 11 11 5666
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~ 311 (370)
+-..-|+ -+.+.+.|+-....|..|-++++-|...++-+
T Consensus 149 ilDsdHs--~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp 187 (237)
T COG3510 149 ILDSDHS--MEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP 187 (237)
T ss_pred EecCCch--HHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence 6566665 45677888989999999999999998887654
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=84.11 E-value=1 Score=40.13 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred CCCeEEEEcCcccHHHHHH---HhhC--CCCeEEEeeh----hhHHHh---------------------------CCCC-
Q 017495 207 GLKVLVDVGGGIGVTLGMI---TSRY--PCIKGISFDL----PHVLAN---------------------------APSF- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l---~~~~--p~~~~~~~D~----p~~~~~---------------------------a~~~- 249 (370)
=+.-|+|+||-.|..+..+ ++.+ ++-++.++|. |..-.. ....
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 3579999999999876543 3333 4567888882 322110 0111
Q ss_pred ---CCCeEEeccCCCCCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 250 ---PGVEHVGGDMFENVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 250 ---~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++.++.|.+.+..|.. +-|-+.++=.++-+ -....|..++..|.|||.+++-|.
T Consensus 154 l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYe-sT~~aLe~lyprl~~GGiIi~DDY 213 (248)
T PF05711_consen 154 LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYE-STKDALEFLYPRLSPGGIIIFDDY 213 (248)
T ss_dssp TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHH-HHHHHHHHHGGGEEEEEEEEESST
T ss_pred CCcccEEEECCcchhhhccCCCccEEEEEEeccchH-HHHHHHHHHHhhcCCCeEEEEeCC
Confidence 46899999987644432 22222222222322 346899999999999999998554
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term | Back alignment and domain information |
|---|
Probab=84.11 E-value=1.4 Score=34.39 Aligned_cols=35 Identities=9% Similarity=-0.006 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++|++|||+.+.+ .++.++.+|+.|.+.|+|+-.
T Consensus 18 ~~vtl~elA~~l~c----S~Rn~r~lLkkm~~~gWi~W~ 52 (115)
T PF12793_consen 18 VEVTLDELAELLFC----SRRNARTLLKKMQEEGWITWQ 52 (115)
T ss_pred cceeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeee
Confidence 47899999999999 999999999999999999974
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.85 E-value=2.1 Score=38.05 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHhhcCCCCCC--eEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh
Q 017495 196 NKILDVYRGFDGLK--VLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN 245 (370)
Q Consensus 196 ~~l~~~~~~~~~~~--~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~ 245 (370)
+.+++.+. +++.. +|||.=+|.|..+..++.+ +++++.++. |.+...
T Consensus 76 ~~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaal 125 (250)
T PRK10742 76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAAL 125 (250)
T ss_pred cHHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 35666665 56555 9999999999999999986 567999987 555443
|
|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=83.84 E-value=1.1 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.226 Sum_probs=27.7
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
|.+.||+.+|+ +.+-+.+.++.|+..|+|
T Consensus 27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence 89999999999 999999999999999986
|
|
| >PF13518 HTH_28: Helix-turn-helix domain | Back alignment and domain information |
|---|
Probab=83.71 E-value=1.6 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=27.0
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
.|+.++|+.+|+ ++..+.+|++.....|+
T Consensus 13 ~s~~~~a~~~gi----s~~tv~~w~~~y~~~G~ 41 (52)
T PF13518_consen 13 ESVREIAREFGI----SRSTVYRWIKRYREGGI 41 (52)
T ss_pred CCHHHHHHHHCC----CHhHHHHHHHHHHhcCH
Confidence 599999999999 99999999999998885
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=83.66 E-value=2 Score=38.67 Aligned_cols=76 Identities=17% Similarity=0.141 Sum_probs=48.4
Q ss_pred HHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcE
Q 017495 221 TLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299 (370)
Q Consensus 221 ~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ 299 (370)
++..|.+..++.+++++|. +...+.+.+.+-+.-...+ .+.....|+|+++ .|......+|+++...+++|..
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla-----vP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA-----VPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE------S-HHHHHHHHHHHHCGS-TTSE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc-----CCHHHHHHHHHHhhhhcCCCcE
Confidence 3567888888999999998 7777777544333333332 1223344998876 3455677888888888888765
Q ss_pred EEE
Q 017495 300 VII 302 (370)
Q Consensus 300 lli 302 (370)
+.=
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 | Back alignment and domain information |
|---|
Probab=83.57 E-value=1.1 Score=31.77 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=25.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~ 90 (370)
++..|+.| .|+|+++||..+|. ....++..|..+.
T Consensus 29 LLr~LA~G--------~PVt~~~LA~a~g~----~~e~v~~~L~~~p 63 (77)
T PF12324_consen 29 LLRLLAKG--------QPVTVEQLAAALGW----PVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHTTT--------S-B-HHHHHHHHT------HHHHHHHHHH-T
T ss_pred HHHHHHcC--------CCcCHHHHHHHHCC----CHHHHHHHHHhCC
Confidence 78889987 69999999999999 7777777776654
|
99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A. |
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=83.48 E-value=2.8 Score=30.98 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=49.8
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHH----------HHhcCCce-eccccCCCCCc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLS----------LLASYDIL-RCSLQNGDNGQ 106 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~----------~L~~~g~l-~~~~~~~~~g~ 106 (370)
.=++..||..|... .| .+.++.|||+.+++ ++..+..-|+ .|+..|++ ++. ...|
T Consensus 8 S~~R~~vl~~L~~~-----yp-~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~---~~~g- 73 (90)
T PF07381_consen 8 SKVRKKVLEYLCSI-----YP-EPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEE---EKGG- 73 (90)
T ss_pred HHHHHHHHHHHHHc-----CC-CcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEee---ecCC-
Confidence 44667788888765 23 58999999999999 8887777665 58999999 332 1223
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
...|++|+.+..++
T Consensus 74 -~k~Y~lT~~G~~~~ 87 (90)
T PF07381_consen 74 -FKYYRLTEKGKRIA 87 (90)
T ss_pred -eeEEEeChhhhhHH
Confidence 45799998876543
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PRK13777 transcriptional regulator Hpr; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=3.1 Score=35.42 Aligned_cols=67 Identities=15% Similarity=-0.056 Sum_probs=48.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
..++..|... +++|..+||+.+.+ +...+.+++.-|...|+|.... .+.|.+ .-...+|+.++.+.
T Consensus 48 ~~iL~~L~~~--------~~itq~eLa~~l~l----~~sTvtr~l~rLE~kGlI~R~~-~~~DrR-~~~I~LTekG~~l~ 113 (185)
T PRK13777 48 HHILWIAYHL--------KGASISEIAKFGVM----HVSTAFNFSKKLEERGYLTFSK-KEDDKR-NTYIELTEKGEELL 113 (185)
T ss_pred HHHHHHHHhC--------CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHHH
Confidence 3566667665 37999999999999 8889999999999999999742 222221 23355677776554
Q ss_pred c
Q 017495 122 K 122 (370)
Q Consensus 122 ~ 122 (370)
.
T Consensus 114 ~ 114 (185)
T PRK13777 114 L 114 (185)
T ss_pred H
Confidence 3
|
|
| >PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A | Back alignment and domain information |
|---|
Probab=83.19 E-value=1.1 Score=31.59 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|-++||+.+|+ +...+.+.|+.|...|++..
T Consensus 28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~ 60 (76)
T PF13545_consen 28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEV 60 (76)
T ss_dssp ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 6899999999999 99999999999999999985
|
... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=83.07 E-value=2.6 Score=38.51 Aligned_cols=103 Identities=15% Similarity=0.102 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCC----C--CCCeEEeccCCCC----CCC-CCEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPS----F--PGVEHVGGDMFEN----VPR-GDAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~----~--~rv~~~~~D~~~~----~p~-~D~i~~ 271 (370)
..+..+|||..++.|+=+.++++..+ ...++..|. +.-+...+. . ..+.....|.... .+. .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678899999999999999999987 567888896 544443322 1 3455555565442 112 266655
Q ss_pred ------cccccCCCh-------hHH-------HHHHHHHHHhC----CCCcEEEEEeecC
Q 017495 272 ------KWMLHGWTD-------EHC-------LKLLKNCWEAL----PENGKVIIVESIL 307 (370)
Q Consensus 272 ------~~vLh~~~d-------~~~-------~~iL~~~~~~L----~pgG~lli~e~~~ 307 (370)
..++..-++ .+. .++|+++.+.+ ||||+|+-.....
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~ 222 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL 222 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence 112222111 111 47899999999 9999999877654
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=82.11 E-value=2.4 Score=41.56 Aligned_cols=69 Identities=10% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHhcChHHHHhhcccccCCCCCC-CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 39 AIELNVIDIISAASAAEDGHGEL-LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.+..|+..|... ++ .+.++||+.+|+ ++..+.+.+..|.+.|+++.... +...|.+|..+
T Consensus 3 ~~e~~iL~~l~~~--------~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~------~~~~~~LT~eG 64 (492)
T PLN02853 3 MAEEALLGALSNN--------EEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI------KRETWVLTEEG 64 (492)
T ss_pred hHHHHHHHHHHhc--------CCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE------EEEEEEECHHH
Confidence 4566788888764 24 799999999999 99999999999999999986432 25789999999
Q ss_pred h-hhhcCCC
Q 017495 118 K-FLIKNQD 125 (370)
Q Consensus 118 ~-~l~~~~~ 125 (370)
+ ++....+
T Consensus 65 ~~~l~~G~P 73 (492)
T PLN02853 65 KKYAAEGSP 73 (492)
T ss_pred HHHHHcCCH
Confidence 7 5554444
|
|
| >PRK10046 dpiA two-component response regulator DpiA; Provisional | Back alignment and domain information |
|---|
Probab=82.06 E-value=2.7 Score=36.77 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=37.7
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|++.+..+ ..+.|..|||+++++ ++.-+++.+..|++.|++...
T Consensus 166 ~Vl~~~~~g-------~~g~s~~eIa~~l~i----S~~Tv~~~~~~~~~~~~~~~~ 210 (225)
T PRK10046 166 AVRKLFKEP-------GVQHTAETVAQALTI----SRTTARRYLEYCASRHLIIAE 210 (225)
T ss_pred HHHHHHHcC-------CCCcCHHHHHHHhCc----cHHHHHHHHHHHHhCCeEEEE
Confidence 456666653 125899999999999 999999999999999999863
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.62 E-value=8.3 Score=34.04 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-----hhHHHhCCCCCCCeEEeccCCCCCCC----C--CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-----PHVLANAPSFPGVEHVGGDMFENVPR----G--DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----p~~~~~a~~~~rv~~~~~D~~~~~p~----~--D~i~~~ 272 (370)
.++..+||-+|.++|....++..-. |+--++.++. -+.+..++++.+|.-+.-|..-|..- + |+|+.-
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFaD 233 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFAD 233 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEecc
Confidence 6788999999999999888877653 5555666653 24566677777777777777654321 2 776653
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+-+ +++.+-+.-+++--||+||.++|.=.
T Consensus 234 -vaq---pdq~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 234 -VAQ---PDQARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred -CCC---chhhhhhhhhhhhhhccCCeEEEEEe
Confidence 222 34555566688999999999998544
|
|
| >PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) | Back alignment and domain information |
|---|
Probab=81.18 E-value=2.1 Score=32.44 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=37.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.-.||+.|...- ....++++.+|++++++ +..-++..|+.|...|+|-.
T Consensus 48 ~~~~Vl~~i~~~~----~~~~Gv~v~~I~~~l~~----~~~~v~~al~~L~~eG~IYs 97 (102)
T PF08784_consen 48 LQDKVLNFIKQQP----NSEEGVHVDEIAQQLGM----SENEVRKALDFLSNEGHIYS 97 (102)
T ss_dssp HHHHHHHHHHC--------TTTEEHHHHHHHSTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHhcC----CCCCcccHHHHHHHhCc----CHHHHHHHHHHHHhCCeEec
Confidence 4455666665510 11246999999999999 99999999999999999874
|
RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A. |
| >COG3432 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.98 E-value=1.8 Score=32.26 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++....-|.-..++ +.......++.|+..|++... +.| ....|.+|+.+..|.
T Consensus 30 ~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~----~~~-~~~~y~lT~KG~~fl 82 (95)
T COG3432 30 GGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQ----DNG-RRKVYELTEKGKRFL 82 (95)
T ss_pred CCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEec----cCC-ccceEEEChhHHHHH
Confidence 37888889999999 999999999999999966642 111 134799999987544
|
|
| >PRK13509 transcriptional repressor UlaR; Provisional | Back alignment and domain information |
|---|
Probab=80.93 E-value=2.3 Score=38.19 Aligned_cols=44 Identities=16% Similarity=0.273 Sum_probs=39.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..|.+.|... +.+++.|||+.+++ ++.-++|-|+.|.+.|++..
T Consensus 8 ~~Il~~l~~~--------~~~~~~ela~~l~v----S~~TirRdL~~Le~~g~i~r 51 (251)
T PRK13509 8 QILLELLAQL--------GFVTVEKVIERLGI----SPATARRDINKLDESGKLKK 51 (251)
T ss_pred HHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 3467788776 48999999999999 99999999999999999985
|
|
| >TIGR03433 padR_acidobact transcriptional regulator, Acidobacterial, PadR-family | Back alignment and domain information |
|---|
Probab=80.79 E-value=6 Score=29.85 Aligned_cols=57 Identities=16% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
|.+--+|++.+ .+ ++..+.+.|+-|...|+|+....+.+.|+....|.+|+.++.+.
T Consensus 17 ~~~GYei~~~l~~~~~~~~~i----~~gtlY~~L~rLe~~GlI~~~~~~~~~~~~rk~y~iT~~Gr~~l 81 (100)
T TIGR03433 17 PLHGYGIAQRIQQISEDVLQV----EEGSLYPALHRLERRGWIAAEWGESENNRRAKFYRLTAAGRKQL 81 (100)
T ss_pred CCCHHHHHHHHHHHcCCcccc----CCCcHHHHHHHHHHCCCeEEEeeecCCCCCceEEEECHHHHHHH
Confidence 77877887774 45 78889999999999999996311122233346799999987544
|
Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein |
| >COG1846 MarR Transcriptional regulators [Transcription] | Back alignment and domain information |
|---|
Probab=80.44 E-value=3 Score=32.20 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+-.+..++..|... + +.+..+||+.+++ .+..+.++++.|+..|++.... ...|. ....+.+|+.+
T Consensus 21 t~~q~~~L~~l~~~-----~---~~~~~~la~~l~i----~~~~vt~~l~~Le~~glv~r~~-~~~Dr-R~~~l~lT~~G 86 (126)
T COG1846 21 TPPQYQVLLALYEA-----G---GITVKELAERLGL----DRSTVTRLLKRLEDKGLIERLR-DPEDR-RAVLVRLTEKG 86 (126)
T ss_pred CHHHHHHHHHHHHh-----C---CCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Ccccc-ceeeEEECccH
Confidence 44566667777765 1 3443899999999 9999999999999999999752 22221 12346777777
Q ss_pred hhhhcC
Q 017495 118 KFLIKN 123 (370)
Q Consensus 118 ~~l~~~ 123 (370)
+.+...
T Consensus 87 ~~~~~~ 92 (126)
T COG1846 87 RELLEQ 92 (126)
T ss_pred HHHHHH
Confidence 654443
|
|
| >PRK09775 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=2.4 Score=41.35 Aligned_cols=54 Identities=24% Similarity=0.253 Sum_probs=42.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
|...|..+ |.|+.||++.+++ +...+++.|..| .|+|... ..|+ ..+|++....
T Consensus 5 ~~~~L~~g---------~~~~~eL~~~l~~----sq~~~s~~L~~L--~~~V~~~----~~gr-~~~Y~l~~~~ 58 (442)
T PRK09775 5 LTTLLLQG---------PLSAAELAARLGV----SQATLSRLLAAL--GDQVVRF----GKAR-ATRYALLRPL 58 (442)
T ss_pred HHHHHhcC---------CCCHHHHHHHhCC----CHHHHHHHHHHh--hcceeEe----ccCc-eEEEEecccc
Confidence 45667765 8999999999999 999999999999 8888753 2343 3667776543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 370 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-113 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 1e-106 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 1e-103 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 4e-70 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 4e-60 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 2e-25 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 1e-24 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 1e-24 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 2e-24 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 4e-24 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-22 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 2e-12 | ||
| 2ip2_A | 334 | Structure Of The Pyocyanin Biosynthetic Protein Phz | 6e-10 | ||
| 4a6d_A | 353 | Crystal Structure Of Human N-Acetylserotonin Methyl | 5e-09 | ||
| 3gwz_A | 369 | Structure Of The Mitomycin 7-O-Methyltransferase Mm | 1e-08 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 7e-08 | ||
| 3i53_A | 332 | Crystal Structure Of An O-Methyltransferase (Ncsb1) | 3e-07 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-06 | ||
| 1xds_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 2e-05 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334 | Back alignment and structure |
|
| >pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353 | Back alignment and structure |
|
| >pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr Length = 369 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From Neocarzinostatin Biosynthesis In Complex With S-Adenosyl-L- Homocysteine (Sah) Length = 332 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
| >pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 436 bits (1124), Expect = e-154
Identities = 194/369 (52%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 2 ANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGEL 61
+ + T EE A++LA+AAVLPM LK+AIEL+V++I+ A
Sbjct: 4 TGNAEIQIIPTHSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIM----AKSVPPSGY 59
Query: 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121
+S ++IAA+LPT NP+AP +LDR+L LLASY ++ +L+ +G+VER+YG AP+CKFL
Sbjct: 60 ISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLT 119
Query: 122 KNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNG 181
K ++D S+AP LL DKV +E W++LKD ILEGGIPF +AYGM F+Y GTD R N
Sbjct: 120 K--NEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINK 177
Query: 182 VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPH 241
VFN+ MS++S + M KIL++Y GF+GL +VDVGGG G MI ++YP I I+FDLPH
Sbjct: 178 VFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPH 237
Query: 242 VLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301
V+ +AP+F GVEH+GGDMF+ VP+GDAIF+KW+ H W+DEHCLKLLKNC+ ALP++GKVI
Sbjct: 238 VIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVI 297
Query: 302 IVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAY 361
+ E ILP P+ ++ +V D MLA GG+ER++KE++ALA SGF G ++ CA+
Sbjct: 298 VAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAF 357
Query: 362 NSWVMEFHK 370
N++VMEF K
Sbjct: 358 NTYVMEFLK 366
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 436 bits (1122), Expect = e-153
Identities = 187/371 (50%), Positives = 269/371 (72%), Gaps = 12/371 (3%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M ++ + + E+ A++LA+++VLPM LK+AIEL +++I+ G+
Sbjct: 5 MGST---AADMAASADEDACMFALQLASSSVLPMTLKNAIELGLLEILV------AAGGK 55
Query: 61 LLSASKIAARLPT-KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119
L+ +++AA+LP+ NP+AP ++DR+L LLASY+++ C ++ G +G++ R YGAAP+CKF
Sbjct: 56 SLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKF 115
Query: 120 LIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRF 179
L ++D S+A L L++ DKV MESWY+LKD +L+GGIPF +AYGM+ FEY GTDPRF
Sbjct: 116 LTP--NEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRF 173
Query: 180 NGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239
N VFNE M NHS ++ K+L++Y GF+GL LVDVGGG+G T+ I + YP IKG++FDL
Sbjct: 174 NRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL 233
Query: 240 PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGK 299
PHV++ AP FPGV HVGGDMF+ VP GD I +KW+LH W+D+HC LLKNC++ALP +GK
Sbjct: 234 PHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGK 293
Query: 300 VIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359
V++V+ ILP+ PE SS VF D+ MLA GGRER ++E++ALA+ +GF+G++
Sbjct: 294 VVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYI 353
Query: 360 AYNSWVMEFHK 370
N+W +EF K
Sbjct: 354 YANAWAIEFTK 364
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 415 bits (1067), Expect = e-145
Identities = 159/379 (41%), Positives = 233/379 (61%), Gaps = 16/379 (4%)
Query: 1 MANSKPKRNN-----ATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAE 55
M NS + + + ++ A+ L V P VL +AI+LN+ +II A
Sbjct: 1 MGNSYITKEDNQISATSEQTEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEII----AKA 56
Query: 56 DGHGELLSASKIAARLP--TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113
G +S S+IA++LP T++ D P LDRML LLASY +L + + ++G ERVYG
Sbjct: 57 TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGL 116
Query: 114 APICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGI-PFRRAYGMTQFEY 172
+ + K+L+ D+ G +A ++ W + K+ +++ I F+ +G+T++E+
Sbjct: 117 SMVGKYLVP--DESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEF 174
Query: 173 LGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI 232
+G D + N +FN++M + A M ++L++Y GF+G+ LVDVGGG G L +I S+YP I
Sbjct: 175 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI 234
Query: 233 KGISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWE 292
KGI+FDLP V+ NAP G+EHVGGDMF +VP+GDA+ LK + H W+DE C++ L NC +
Sbjct: 235 KGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHK 294
Query: 293 ALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352
AL NGKVIIVE ILP P S +V D M T GGRER++K+YE L+K SGFS
Sbjct: 295 ALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFS 353
Query: 353 GLEIVCCAYNS-WVMEFHK 370
++ C A+NS VMEF+K
Sbjct: 354 KFQVACRAFNSLGVMEFYK 372
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 381 bits (981), Expect = e-132
Identities = 106/373 (28%), Positives = 177/373 (47%), Gaps = 26/373 (6%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
MA+S N + + L + A + M LK A+E+N+ +II HG+
Sbjct: 1 MASSI---NGRKPSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQN-------HGK 50
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
+S S + + L + R++ LA + E Y + L
Sbjct: 51 PISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEII------TKEEESYALTVASELL 103
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGI-PFRRAYGMTQFEYLGTDPRF 179
++ D +AP+ D S++ LK I E + F G +++L +P +
Sbjct: 104 VR---GSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEY 160
Query: 180 NGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239
N FN+AM++ S L+ + D FDGL+ +VDVGGG G T +I +P +K I FD
Sbjct: 161 NTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR 220
Query: 240 PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPEN-- 297
P V+ N + +VGGDMF ++P DA+ LK++LH WTD+ CL++LK C EA+ +
Sbjct: 221 PQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGK 280
Query: 298 -GKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356
GKV I++ ++ + + I D+ M G+ER+++E++ L +GF +I
Sbjct: 281 RGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA--CLNGKERNEEEWKKLFIEAGFQHYKI 338
Query: 357 VCCAYNSWVMEFH 369
++E +
Sbjct: 339 SPLTGFLSLIEIY 351
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 375 bits (964), Expect = e-130
Identities = 106/354 (29%), Positives = 172/354 (48%), Gaps = 21/354 (5%)
Query: 25 RLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDR 84
+ V M LKSA+EL + D I HG+ ++ S++A+ L +P +L R
Sbjct: 16 KHVYNFVSSMALKSAMELGIADAIHN-------HGKPMTLSELASSLKL-HPSKVNILHR 67
Query: 85 MLSLLASYDILRCSLQNGDNGQV--ERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKV 142
L LL ++ G G E Y P K LI ++ +
Sbjct: 68 FLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLIS---GKPTCLSSIVKGALHPS 124
Query: 143 FMESWYHLKDVILEGG--IPFRRAYGMTQFEYLGTDPRFN--GVFNEAMSNHSALVMNKI 198
++ W K E F A G + +++L D + +F +AM++ S + +
Sbjct: 125 SLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVL 184
Query: 199 LDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGD 258
+ R F+GL+ LVDVGGG G +I +P +K FD P V+ N + VGGD
Sbjct: 185 QENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGD 244
Query: 259 MFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALP---ENGKVIIVESILPLVPENQA 315
MF+++P DA+ LKW+LH W DE LK+LKN EA+ ++GKVII++ + +++
Sbjct: 245 MFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRG 304
Query: 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFH 369
+ + + DL ML G+ER+K+E+E L ++GFS +I + ++E +
Sbjct: 305 LTELQLDYDLVMLT-MFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVY 357
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 372 bits (958), Expect = e-129
Identities = 84/372 (22%), Positives = 142/372 (38%), Gaps = 36/372 (9%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M +P +D+ + A L++A + V D +
Sbjct: 4 MQRQRPPSRAGGDMDRLQSALALYEEAMGYTYAAALRAAAAVGVADHL---------VDG 54
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
+ +++AA T + DA L R+L LLA D++R S + + L
Sbjct: 55 PRTPAELAAATGT-DADA---LRRVLRLLAVRDVVRES---------DGRFALTDKGAAL 101
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
D L+ D +F + + + F +G + Y D
Sbjct: 102 R---SDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVE 158
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
++ E M SA + F + DVGGG G L + +P ++G+ D
Sbjct: 159 ALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217
Query: 241 HVLAN----APSFPG-VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALP 295
V+A AP G + V GD VP D LK +LH W DE +++L NC +P
Sbjct: 218 EVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP 277
Query: 296 ENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355
+G+V+++++++P + S + D MLA G+ER+ E E L +G
Sbjct: 278 AHGRVLVIDAVVPEGNDAHQSKEM----DFMMLA-ARTGQERTAAELEPLFTAAGLRLDR 332
Query: 356 IVCCAYNSWVME 367
+V + +
Sbjct: 333 VVGTSSVMSIAV 344
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-124
Identities = 78/357 (21%), Positives = 143/357 (40%), Gaps = 39/357 (10%)
Query: 23 AVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLL 82
+ A + A+EL V +++ +A+ +A + L
Sbjct: 42 VNDILQGAWKARAIHVAVELGVPELLQEGP---------RTATALAEATGA-HEQT---L 88
Query: 83 DRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKV 142
R+L LLA+ + + ++ + L+ D VA
Sbjct: 89 RRLLRLLATVGVFDDL-------GHDDLFAQNALSAVLLP---DPASPVATDARFQAAPW 138
Query: 143 FMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVY 202
+W L + G F A G + ++ DP+ +FN AM + S ++ Y
Sbjct: 139 HWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAY 198
Query: 203 RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHV 255
F G VD+GGG G + + +P ++G + P V A E +
Sbjct: 199 -DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEIL 257
Query: 256 GGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314
GD FE +P G D +K +LH W D+ +++L+ A+ + +++++++++ E
Sbjct: 258 PGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLI---DERP 314
Query: 315 ASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC-AYNSWVMEFHK 370
A+S + DL +L GG ERS+ E+ AL + SG + C A ++E +
Sbjct: 315 AASTLFV--DLLLLV-LVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-124
Identities = 85/383 (22%), Positives = 143/383 (37%), Gaps = 41/383 (10%)
Query: 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGE 60
M++S P ++ + ++ V PM L+ A L ++D +
Sbjct: 1 MSSSSPGE---PLEPTDQDLDVLLKNLGNLVTPMALRVAATLRLVDHL---------LAG 48
Query: 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120
+ + +A R T +P A L R++ L +L + G R + L
Sbjct: 49 ADTLAGLADRTDT-HPQA---LSRLVRHLTVVGVLEGGEKQG------RPLRPTRLGMLL 98
Query: 121 IKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180
A L L ++ L DV+ G + YG +E L D
Sbjct: 99 AD--GHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALA 156
Query: 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP 240
F+ MS L D Y + ++ ++DVGGG G L I R P ++G +L
Sbjct: 157 DSFDALMSCDEDLAYEAPADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA 215
Query: 241 HVLANAPSF-------PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWE 292
A V GD F+ +P D + L ++L W+DE L +L+ C
Sbjct: 216 GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVR 275
Query: 293 ALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352
AL G++++++ + A DL ML GGR R++ E LA ++G +
Sbjct: 276 ALEPGGRLLVLDRADV--EGDGADRFFSTLLDLRMLT-FMGGRVRTRDEVVDLAGSAGLA 332
Query: 353 GLEIV-----CCAYNSWVMEFHK 370
++ ++EF
Sbjct: 333 LASERTSGSTTLPFDFSILEFTA 355
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-120
Identities = 79/354 (22%), Positives = 135/354 (38%), Gaps = 42/354 (11%)
Query: 25 RLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDR 84
++ + A L + D+I + S +AA + + + + + R
Sbjct: 14 QVVTGEWKSRCVYVATRLGLADLI---------ESGIDSDETLAAAVGS-DAER---IHR 60
Query: 85 MLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFM 144
++ LL +++I + Y P L D +GS +L + + F
Sbjct: 61 LMRLLVAFEIFQGD--------TRDGYANTPTSHLLR----DVEGSFRD-MVLFYGEEFH 107
Query: 145 ESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRG 204
+W + +L G F A+G + YL P F AM + L ++I +
Sbjct: 108 AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASN-LAFHEIPRLL-D 165
Query: 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGG 257
F G + VDVGGG G I P +G+ D L A V VGG
Sbjct: 166 FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGG 224
Query: 258 DMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS 316
DM + VP D L ++ + L+LL NC EA+ +G+V+++E + + S
Sbjct: 225 DMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMS 284
Query: 317 SHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370
D+ + GR R+ +E L GF+ IV + ++ +
Sbjct: 285 VLW----DVHLFM-ACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = e-119
Identities = 89/360 (24%), Positives = 140/360 (38%), Gaps = 41/360 (11%)
Query: 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNP 76
+ + +R PM ++ A L V D I+A +A++IA+ +
Sbjct: 3 KRAAHIGLRALADLATPMAVRVAATLRVADHIAAGH---------RTAAEIASAAGA-HA 52
Query: 77 DAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFL 136
D+ LDR+L L + + + VYG + L D G L +
Sbjct: 53 DS---LDRLLRHLVAVGLFTR--------DGQGVYGLTEFGEQLRD--DHAAGKRKWLDM 99
Query: 137 LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMN 196
+ L I G + YG + +E LG+DP + F+ MS+H L
Sbjct: 100 NSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYT 159
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF------- 249
I Y + L +VDVGGG G L + + + + G DL + A
Sbjct: 160 GIAAKY-DWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLS 218
Query: 250 PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308
+ V G F+ +P G L +LH W D + +L+ C EA G V+++E++
Sbjct: 219 GRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAG 278
Query: 309 LVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEF 368
H DL ML GG+ERS E LA +G + +Y S ++E
Sbjct: 279 -------DEHAGTGMDLRMLT-YFGGKERSLAELGELAAQAGLAVRAAHPISYVS-IVEM 329
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 346 bits (889), Expect = e-118
Identities = 80/355 (22%), Positives = 138/355 (38%), Gaps = 36/355 (10%)
Query: 11 ATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAAR 70
+ Q+ + + PMV+++A L ++D I + +AAR
Sbjct: 11 VAARPQQIDALRTLIRLGSLHTPMVVRTAATLRLVDHI---------LAGARTVKALAAR 61
Query: 71 LPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGS 130
T P+A L R++ L + +L + + + L D
Sbjct: 62 TDT-RPEA---LLRLIRHLVAIGLLEE--------DAPGEFVPTEVGELLAD--DHPAAQ 107
Query: 131 VAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNH 190
A L S+ L D I G + YG +E L P F+ ++
Sbjct: 108 RAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACD 167
Query: 191 SALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF- 249
+ + Y + ++ ++DVGGG G I R P + ++ + A S+
Sbjct: 168 QDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYL 226
Query: 250 ------PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302
V+ V GD FE +PR DAI L ++L W D +++L C EAL G+++I
Sbjct: 227 KDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILI 286
Query: 303 VESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357
E + + E DL ML GG R++++++ LA ++G E+
Sbjct: 287 HE---RDDLHENSFNEQFTELDLRMLV-FLGGALRTREKWDGLAASAGLVVEEVR 337
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 4e-96
Identities = 66/370 (17%), Positives = 114/370 (30%), Gaps = 46/370 (12%)
Query: 11 ATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAAR 70
++ NA +K+A+ELNV IS S+ +A +
Sbjct: 2 MSTPSPALF----FNTVNAYQRSAAIKAAVELNVFTAISQGI---------ESSQSLAQK 48
Query: 71 LPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGS 130
T + + + L + Y +
Sbjct: 49 CQT-SERG---MRMLCDYLVIIGFMTKQ---------AEGYRLTSDSAMFLDR--QSKFY 93
Query: 131 VAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNH 190
V + + L +L+GG + +F + M+N
Sbjct: 94 VGDAIEFLLSPMITNGFNDLTAAVLKGGTAISSEGTL--SPEHPVWVQFAKAMSPMMANP 151
Query: 191 SALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFP 250
+ L+ + + LKV +D+ G+ + P + D VL A
Sbjct: 152 AQLIAQLVN--ENKIEPLKV-LDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENA 208
Query: 251 G-------VEHVGGDMFENV--PRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301
+ G FE D + L LH + C +LL+ AL GKVI
Sbjct: 209 RIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVI 268
Query: 302 IVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA- 360
+ + I ++ + L MLA T G + EYE++ N+GFS ++
Sbjct: 269 VFDFIP---NSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPT 325
Query: 361 YNSWVMEFHK 370
V+ +K
Sbjct: 326 TQQQVIVAYK 335
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 286 bits (733), Expect = 8e-95
Identities = 51/379 (13%), Positives = 129/379 (34%), Gaps = 44/379 (11%)
Query: 4 SKPKRNNATSVDQEEIGKLAVR----LANAAVLPMVLKSAIELNVIDIISAASAAEDGHG 59
S + + ++ R + + +K+AIEL++ +
Sbjct: 12 SGLVPRGSHMMSNNDLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHM---------AE 62
Query: 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119
+ +AA + P L+ +L L ++ + + +
Sbjct: 63 GPKDLATLAADTGS-VPPR---LEMLLETLRQMRVINLE---------DGKWSLTEFADY 109
Query: 120 LIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRF 179
+ + + + + L + G F+ Q Y
Sbjct: 110 MFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQA-VRGQKNFK-----GQVPYPPVTRED 163
Query: 180 NGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL 239
N F E +++ + +L+ DG+K ++DVGGGIG + +P + +L
Sbjct: 164 NLYFEEIHRSNAKFAIQLLLEEA-KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL 222
Query: 240 PHVLANAPSFPG-------VEHVGGDMF-ENVPRGDAIFLKWMLHGWTDEHCLKLLKNCW 291
P + + + D++ E+ P DA+ +L+ ++ + K +
Sbjct: 223 PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAF 282
Query: 292 EALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351
+A+ G+++I++ ++ + M + + + Y+ + ++ G+
Sbjct: 283 DAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGMP--FSVLGFKEQARYKEILESLGY 340
Query: 352 SGLEIVCCAYNSWVMEFHK 370
+ +V Y+ +++ K
Sbjct: 341 KDVTMV-RKYDHLLVQAVK 358
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 270 bits (691), Expect = 1e-88
Identities = 51/344 (14%), Positives = 120/344 (34%), Gaps = 49/344 (14%)
Query: 24 VRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLD 83
V+L++ +L A+ + D+ + +++AA
Sbjct: 29 VKLSDQYRQSAILHYAVADKLFDLTQTG----------RTPAEVAASFGM-VEGK---AA 74
Query: 84 RMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC-KFLIKNQDDDDGSVAPLFLLHHDKV 142
+L LA+ +L + + ++L + P+ + H +
Sbjct: 75 ILLHALAALGLLTKE---------GDAFRNTALTERYLTT---TSADYIGPI--VEHQYL 120
Query: 143 FMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVY 202
++W L +++ + Q D R FN+AM S +++ + ++
Sbjct: 121 QWDNWPRLGEILRSE-----KPLAFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELG 175
Query: 203 RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG-------VEHV 255
F + ++D+ GG G L + R+P + G +DLP A VE
Sbjct: 176 -VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFF 234
Query: 256 GGDMFENVP----RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311
++ + D + L LH + +++ + + G ++I+ +
Sbjct: 235 EKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILT---MTMN 291
Query: 312 ENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355
+++ + + + L M+ T G + +++G + E
Sbjct: 292 DDRVTPALSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGE 335
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 269 bits (690), Expect = 3e-88
Identities = 62/381 (16%), Positives = 133/381 (34%), Gaps = 44/381 (11%)
Query: 6 PKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSAS 65
R E +LA +A V+ V + ++ + ++ G E +
Sbjct: 2 SLRYTKEQCTAAEAQRLAQEIAFGPVVFQVSRLMLKFGIFQLL-------SGKREGYTLQ 54
Query: 66 KIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQD 125
+I+ R A +L + + E Y A FL+ +
Sbjct: 55 EISGRTGL-TRYA---AQVLLEASLTIGTILLE---------EDRYVLAKAGWFLLND-- 99
Query: 126 DDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGM--TQFEYLGTDP-RFNGV 182
+A + + + V + +HL++ +L G + +G T +E L P +
Sbjct: 100 ----KMARVNMEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKS 155
Query: 183 FNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHV 242
+ +S K L++ K L+D+GG G ++ DLP
Sbjct: 156 WFGFDHFYSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQ 214
Query: 243 LANAPSFPG-------VEHVGGDMFEN---VPRG-DAIFLKWMLHGWTDEHCLKLLKNCW 291
L + G ++ + P G DA+++ L +++E + +L
Sbjct: 215 LEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVA 274
Query: 292 EALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG-GRERSKKEYEALAKNSG 350
+++ ++ KV I+E++ + +S+ + + L+ A G + + +N+G
Sbjct: 275 QSIGKDSKVYIMETLWD-RQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAG 333
Query: 351 FSGLEIV-CCAYNSWVMEFHK 370
EI +++
Sbjct: 334 LEVEEIQDNIGLGHSILQCRL 354
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 2e-08
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 21/151 (13%)
Query: 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA----PSFPGVEHVGGDMFE-NV 263
+D G GIG + ++ + + H+L A P + + M +
Sbjct: 95 SRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATL 154
Query: 264 PRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF 321
P D I ++W TD +K K+C +AL NG + E+
Sbjct: 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST------------- 201
Query: 322 EQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352
D F++ + RS Y+ L SG
Sbjct: 202 -GDRFLVDKEDSSLTRSDIHYKRLFNESGVR 231
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 13/162 (8%)
Query: 184 NEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV 242
+ N S + + L G +D G GIG + + D+
Sbjct: 56 SSIDINSSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDF 114
Query: 243 LANAPSFPG------VEHVGGDMFENVPRG---DAIFLKWMLHGWTDEHCLKLLKNCWEA 293
L A ++ G + + + P D I+++W++ TD+H + L+ C +
Sbjct: 115 LVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGS 174
Query: 294 LPENGKVIIVESILP--LVPENQASSHIVFEQDLFMLAQTTG 333
L NG ++I +++ ++ ++ SS + + + G
Sbjct: 175 LRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAG 216
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 19/175 (10%)
Query: 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA----PSFPGVEHVGGDMF 260
+ +L D+G G G+ + +YP D+ +L A V+++ D
Sbjct: 44 ENPDIL-DLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYS 102
Query: 261 ENVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318
+ D + +H DE +L K + L E+G I + + + +
Sbjct: 103 KYDFEEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNK 162
Query: 319 IVF-----------EQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYN 362
++ E+ ++ ++ + K +GF + + Y
Sbjct: 163 TIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ 217
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 16/183 (8%)
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPG-VE 253
IL+ VL + G G G + + GI + + A P
Sbjct: 36 DILEDVVNKSFGNVL-EFGVGTGNLTNKLLLAGRTVYGI--EPSREMRMIAKEKLPKEFS 92
Query: 254 HVGGDMFENVPRG---DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310
GD + D I + H TD+ + + L + GK++ ++I
Sbjct: 93 ITEGDF-LSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ 151
Query: 311 PENQASSHIVFEQDLFMLAQTTGGRER-SKKEYEALAKNSGFSGLEIVCCAYNS--WVME 367
+ ++ LA + + +N+GF + N WVME
Sbjct: 152 DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGF---HVTFTRLNHFVWVME 208
Query: 368 FHK 370
K
Sbjct: 209 ATK 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.85 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.77 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.76 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.74 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.74 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.73 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.73 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.72 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.72 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.72 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.71 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.7 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.69 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.69 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.68 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.68 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.68 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.68 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.68 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.68 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.68 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.67 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.67 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.66 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.66 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.66 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.66 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.65 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.65 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.64 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.63 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.63 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.61 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.61 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.61 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.61 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.61 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.6 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.6 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.6 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.59 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.59 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.58 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.58 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.57 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.56 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.53 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.53 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.51 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.5 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.5 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.49 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.49 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.48 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.48 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.47 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.47 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.46 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.46 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.45 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.45 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.44 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.44 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.44 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.43 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.41 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.41 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.39 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.39 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.38 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.35 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.35 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.35 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.35 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.33 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.32 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.31 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.31 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.3 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.3 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.29 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.29 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.29 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.29 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.28 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.27 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.27 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.27 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.27 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.26 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.26 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.26 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.25 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.23 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.23 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.22 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.22 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.21 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.21 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.21 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.21 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.2 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.2 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.2 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.19 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.18 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.18 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.18 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.17 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.17 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.16 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.16 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.15 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.14 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.13 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.13 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.13 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.13 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.13 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.12 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.12 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.12 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.12 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.11 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.1 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.1 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.09 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.09 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.08 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.06 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.06 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.06 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.05 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.05 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.04 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.04 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.04 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.04 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.04 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.03 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.03 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.03 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.02 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.02 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.01 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.01 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.0 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.0 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.0 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.99 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.97 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.96 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.94 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.94 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.93 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.92 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.92 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.91 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.9 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.9 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.9 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.9 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.89 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.88 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.88 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.88 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.88 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.87 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.87 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.87 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.87 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.87 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.86 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.85 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.85 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.85 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.85 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.84 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.83 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.82 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.81 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.81 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.81 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.8 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.79 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.76 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.72 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.7 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.7 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.69 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.68 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.67 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.67 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.66 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.64 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.58 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.58 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.56 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.56 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.54 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.5 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.45 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.44 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.43 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.37 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.35 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.34 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.34 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.34 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.33 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.32 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.31 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.3 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.28 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.26 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.26 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.26 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.23 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.23 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.21 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.21 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.19 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.15 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.15 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.15 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.1 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.1 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.04 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.97 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.96 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.94 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 97.86 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.78 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.76 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.75 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.73 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.72 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.67 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.66 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.63 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.59 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.58 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.58 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.47 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.32 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.29 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.28 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.25 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.23 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.22 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.2 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.15 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.11 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 97.03 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 96.92 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 96.83 | |
| 3b73_A | 111 | PHIH1 repressor-like protein; winged-helix-turn-he | 96.73 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.63 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 96.57 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 96.53 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 96.51 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 96.49 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 96.42 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 96.36 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.3 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 96.29 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 96.21 | |
| 3df8_A | 111 | Possible HXLR family transcriptional factor; APC89 | 96.14 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 96.0 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 96.0 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 95.88 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 95.87 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 95.84 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.82 | |
| 1xn7_A | 78 | Hypothetical protein YHGG; alpha+beta, GFT structu | 95.81 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 95.81 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.8 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 95.71 | |
| 1z7u_A | 112 | Hypothetical protein EF0647; winged-helix-turn-hel | 95.68 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 95.66 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 95.65 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 95.62 | |
| 3e6m_A | 161 | MARR family transcriptional regulator; APC88769, s | 95.58 | |
| 1yyv_A | 131 | Putative transcriptional regulator; reductive meth | 95.56 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 95.53 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 95.46 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 95.43 | |
| 2fsw_A | 107 | PG_0823 protein; alpha-beta structure, helix-turn- | 95.42 | |
| 3g3z_A | 145 | NMB1585, transcriptional regulator, MARR family; t | 95.36 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 95.34 | |
| 3bdd_A | 142 | Regulatory protein MARR; putative multiple antibio | 95.33 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.3 | |
| 2nyx_A | 168 | Probable transcriptional regulatory protein, RV14; | 95.27 | |
| 3kp7_A | 151 | Transcriptional regulator TCAR; multiple drug resi | 95.13 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 95.05 | |
| 3u1d_A | 151 | Uncharacterized protein; GNTR-superfamily, structu | 95.02 | |
| 2htj_A | 81 | P fimbrial regulatory protein KS71A; winged helix- | 95.02 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 94.82 | |
| 3k0l_A | 162 | Repressor protein; helix-turn-helix, structural ge | 94.82 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 94.81 | |
| 4g6q_A | 182 | Putative uncharacterized protein; structural genom | 94.8 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 94.77 | |
| 1on2_A | 142 | Transcriptional regulator MNTR; helix-turn-helix, | 94.76 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 94.74 | |
| 2p4w_A | 202 | Transcriptional regulatory protein ARSR family; ar | 94.69 | |
| 3bja_A | 139 | Transcriptional regulator, MARR family, putative; | 94.68 | |
| 2hr3_A | 147 | Probable transcriptional regulator; MCSG, structur | 94.58 | |
| 2f2e_A | 146 | PA1607; transcription factor, helix-TRUN-helix, AP | 94.54 | |
| 3nrv_A | 148 | Putative transcriptional regulator (MARR/EMRR FAM; | 94.48 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 94.44 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 94.39 | |
| 3oop_A | 143 | LIN2960 protein; protein structure initiative, PSI | 94.39 | |
| 2gxg_A | 146 | 146AA long hypothetical transcriptional regulator; | 94.38 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 94.34 | |
| 2pex_A | 153 | Transcriptional regulator OHRR; transcription regu | 94.32 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 94.31 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.3 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 94.29 | |
| 3cjn_A | 162 | Transcriptional regulator, MARR family; silicibact | 94.23 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 94.19 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 94.14 | |
| 1jgs_A | 138 | Multiple antibiotic resistance protein MARR; trans | 94.14 | |
| 3cdh_A | 155 | Transcriptional regulator, MARR family; helix-turn | 94.12 | |
| 2nnn_A | 140 | Probable transcriptional regulator; structural gen | 94.11 | |
| 3jw4_A | 148 | Transcriptional regulator, MARR/EMRR family; DNA-b | 94.05 | |
| 2rdp_A | 150 | Putative transcriptional regulator MARR; PFAM PF01 | 94.01 | |
| 2eth_A | 154 | Transcriptional regulator, putative, MAR family; M | 94.0 | |
| 3s2w_A | 159 | Transcriptional regulator, MARR family; structural | 93.97 | |
| 2obp_A | 96 | Putative DNA-binding protein; structural genomics, | 93.97 | |
| 2wte_A | 244 | CSA3; antiviral protein, viral resistance, winged | 93.94 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 93.93 | |
| 3tgn_A | 146 | ADC operon repressor ADCR; helix-turn-helix, trans | 93.93 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 93.93 | |
| 4esf_A | 117 | PADR-like transcriptional regulator; PADR family, | 93.89 | |
| 2zkz_A | 99 | Transcriptional repressor PAGR; protein-DNA, HTH m | 93.87 | |
| 1s3j_A | 155 | YUSO protein; structural genomics, MARR transcript | 93.85 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 93.75 | |
| 2bv6_A | 142 | MGRA, HTH-type transcriptional regulator MGRA; mul | 93.71 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 93.7 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 93.67 | |
| 2fa5_A | 162 | Transcriptional regulator MARR/EMRR family; multip | 93.67 | |
| 3bj6_A | 152 | Transcriptional regulator, MARR family; helix-turn | 93.64 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 93.59 | |
| 3bro_A | 141 | Transcriptional regulator; helix_TURN_helix, multi | 93.57 | |
| 2fbh_A | 146 | Transcriptional regulator PA3341; MARR, transcript | 93.53 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 93.43 | |
| 2esh_A | 118 | Conserved hypothetical protein TM0937; APC5794, st | 93.38 | |
| 2qww_A | 154 | Transcriptional regulator, MARR family; YP_013417. | 93.37 | |
| 3bpv_A | 138 | Transcriptional regulator; MARR, DNA binding, tran | 93.31 | |
| 1lj9_A | 144 | Transcriptional regulator SLYA; HTH DNA binding pr | 93.3 | |
| 1z91_A | 147 | Organic hydroperoxide resistance transcriptional; | 93.26 | |
| 2fbi_A | 142 | Probable transcriptional regulator; MARR, APC5816, | 93.24 | |
| 4hbl_A | 149 | Transcriptional regulator, MARR family; HTH, trans | 93.24 | |
| 3f8b_A | 116 | Transcriptional regulator, PADR-like family; winge | 93.23 | |
| 2lkp_A | 119 | Transcriptional regulator, ARSR family; symmetric | 93.21 | |
| 1sfx_A | 109 | Conserved hypothetical protein AF2008; structural | 93.2 | |
| 2vn2_A | 128 | DNAD, chromosome replication initiation protein; D | 93.11 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.09 | |
| 3fm5_A | 150 | Transcriptional regulator; MCSG, PF04017, PSI, MAR | 93.08 | |
| 2a61_A | 145 | Transcriptional regulator TM0710; APC4350, MCSG, m | 93.06 | |
| 3deu_A | 166 | Transcriptional regulator SLYA; MARR, WING-helix, | 93.05 | |
| 2x4h_A | 139 | Hypothetical protein SSO2273; transcription; 2.30A | 93.02 | |
| 3boq_A | 160 | Transcriptional regulator, MARR family; MARR famil | 92.86 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 92.82 | |
| 3u2r_A | 168 | Regulatory protein MARR; structural genomics, PSI- | 92.8 | |
| 2qlz_A | 232 | Transcription factor PF0095; 2.50A {Pyrococcus fur | 92.73 | |
| 3hhh_A | 116 | Transcriptional regulator, PADR family; PF03551, s | 92.6 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 92.52 | |
| 3elk_A | 117 | Putative transcriptional regulator TA0346; structu | 92.51 | |
| 2frh_A | 127 | SARA, staphylococcal accessory regulator A; winged | 92.48 | |
| 4b8x_A | 147 | SCO5413, possible MARR-transcriptional regulator; | 92.39 | |
| 2h09_A | 155 | Transcriptional regulator MNTR; transcription regu | 92.18 | |
| 4aik_A | 151 | Transcriptional regulator SLYA; transcription, tra | 92.05 | |
| 1uly_A | 192 | Hypothetical protein PH1932; helix-turn-helix, str | 92.03 | |
| 3nqo_A | 189 | MARR-family transcriptional regulator; structural | 92.03 | |
| 3f3x_A | 144 | Transcriptional regulator, MARR family, putative; | 91.91 | |
| 3r0a_A | 123 | Putative transcriptional regulator; structural gen | 91.85 | |
| 2cfx_A | 144 | HTH-type transcriptional regulator LRPC; transcrip | 91.8 | |
| 2pn6_A | 150 | ST1022, 150AA long hypothetical transcriptional re | 91.78 | |
| 2w25_A | 150 | Probable transcriptional regulatory protein; trans | 91.6 | |
| 1q1h_A | 110 | TFE, transcription factor E, TFE; TFIIE, transcrip | 91.52 | |
| 2p5v_A | 162 | Transcriptional regulator, LRP/ASNC family; NMB057 | 91.33 | |
| 1xma_A | 145 | Predicted transcriptional regulator; southea colla | 91.11 | |
| 2dbb_A | 151 | Putative HTH-type transcriptional regulator PH006; | 90.92 | |
| 2fxa_A | 207 | Protease production regulatory protein HPR; protea | 90.8 | |
| 3hrs_A | 214 | Metalloregulator SCAR; DTXR/MNTR family member, tr | 90.77 | |
| 1bja_A | 95 | Transcription regulatory protein MOTA; activation | 90.55 | |
| 2cg4_A | 152 | Regulatory protein ASNC; DNA binding, FFRP, LRP fa | 90.54 | |
| 3l7w_A | 108 | Putative uncharacterized protein SMU.1704; PADR, t | 90.5 | |
| 4esb_A | 115 | Transcriptional regulator, PADR family; DNA bindin | 90.43 | |
| 2cyy_A | 151 | Putative HTH-type transcriptional regulator PH151; | 90.31 | |
| 3i4p_A | 162 | Transcriptional regulator, ASNC family; PSI, struc | 90.27 | |
| 1xd7_A | 145 | YWNA; structural genomics, protein structure initi | 90.21 | |
| 2ia0_A | 171 | Putative HTH-type transcriptional regulator PF086; | 90.15 | |
| 2d1h_A | 109 | ST1889, 109AA long hypothetical transcriptional re | 90.12 | |
| 2v79_A | 135 | DNA replication protein DNAD; primosome, DNA-bindi | 90.04 | |
| 4fx0_A | 148 | Probable transcriptional repressor protein; helix- | 90.04 | |
| 2e1c_A | 171 | Putative HTH-type transcriptional regulator PH151; | 90.01 | |
| 2fbk_A | 181 | Transcriptional regulator, MARR family; winged-hel | 89.96 | |
| 1i1g_A | 141 | Transcriptional regulator LRPA; helix-turn-helix, | 89.86 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 89.81 | |
| 1yg2_A | 179 | Gene activator APHA; virulence factor, winged heli | 89.59 | |
| 2o03_A | 131 | Probable zinc uptake regulation protein FURB; DNA- | 89.18 | |
| 1okr_A | 123 | MECI, methicillin resistance regulatory protein ME | 88.94 | |
| 1p6r_A | 82 | Penicillinase repressor; transcription regulation, | 88.78 | |
| 1ku9_A | 152 | Hypothetical protein MJ223; putative transcription | 87.99 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 87.94 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 87.47 | |
| 1sfu_A | 75 | 34L protein; protein/Z-DNA complex, DNA binding pr | 87.26 | |
| 2k4b_A | 99 | Transcriptional regulator; DNA binding protein, wi | 87.08 | |
| 1p4x_A | 250 | Staphylococcal accessory regulator A homologue; wi | 86.41 | |
| 2fe3_A | 145 | Peroxide operon regulator; oxidative stress regula | 86.4 | |
| 3k2z_A | 196 | LEXA repressor; winged helix-turn-helix, SOS syste | 86.37 | |
| 3i71_A | 68 | Ethanolamine utilization protein EUTK; helix-turn- | 86.19 | |
| 2dk5_A | 91 | DNA-directed RNA polymerase III 39 kDa polypeptide | 85.61 | |
| 1v4r_A | 102 | Transcriptional repressor; helix-turn-helix, winge | 85.34 | |
| 1jhg_A | 101 | Trp operon repressor; complex (regulatory protein- | 85.19 | |
| 1fx7_A | 230 | Iron-dependent repressor IDER; DTXR, iron-dependen | 84.96 | |
| 2xvc_A | 59 | ESCRT-III, SSO0910; cell cycle, cell division, cyt | 84.76 | |
| 2xig_A | 150 | Ferric uptake regulation protein; hpfur, transcrip | 84.35 | |
| 2dql_A | 115 | PEX protein; circadian clock associated protein, c | 83.96 | |
| 3ri2_A | 123 | Transcriptional regulator, PADR-like family; PSI-b | 83.52 | |
| 2vxz_A | 165 | Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py | 83.49 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 82.92 | |
| 1mzb_A | 136 | Ferric uptake regulation protein; ferric uptake re | 82.64 | |
| 3cta_A | 230 | Riboflavin kinase; structural genomics, transferas | 82.11 | |
| 1j5y_A | 187 | Transcriptional regulator, biotin repressor famil; | 82.08 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 81.89 | |
| 3mwm_A | 139 | ZUR, putative metal uptake regulation protein; FUR | 81.7 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 81.56 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 81.55 | |
| 3tqn_A | 113 | Transcriptional regulator, GNTR family; regulatory | 81.29 | |
| 1hsj_A | 487 | Fusion protein consisting of staphylococcus access | 80.33 | |
| 2b0l_A | 102 | GTP-sensing transcriptional pleiotropic repressor; | 80.02 |
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-54 Score=405.59 Aligned_cols=351 Identities=54% Similarity=1.050 Sum_probs=304.2
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCC-CCCCCcchHHHHHHHHh
Q 017495 12 TSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT-KNPDAPFLLDRMLSLLA 90 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~-~~~~~~~~l~~~L~~L~ 90 (370)
...++.+.+..+++++.+++.+++|++|++||||++|.+. | ++|+|++|||+++++ ++|..+..|+||||+|+
T Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lgifd~L~~~-----g-~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~ 86 (364)
T 3p9c_A 13 AASADEDACMFALQLASSSVLPMTLKNAIELGLLEILVAA-----G-GKSLTPTEVAAKLPSAANPEAPDMVDRILRLLA 86 (364)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTHHHHHHHT-----T-TCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHCChHHHHhhc-----C-CCCCCHHHHHHhcCCCCCccchhhHHHHHHHHH
Confidence 5555778999999999999999999999999999999883 1 248999999999994 43333449999999999
Q ss_pred cCCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChh
Q 017495 91 SYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQF 170 (370)
Q Consensus 91 ~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~ 170 (370)
+.|+|++...++++|..+++|++|+.++.|..+.. +.++++++.+..++.+++.|.+|.+++++|.++|+..+|.++|
T Consensus 87 ~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~ 164 (364)
T 3p9c_A 87 SYNVVTCLVEEGKDGRLSRSYGAAPVCKFLTPNED--GVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAF 164 (364)
T ss_dssp HTTSEEEEEEECSSSCEEEEEEECGGGGGSSCCTT--SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHH
T ss_pred hCCCEEEeccccCCCCcCCEEecCHHHHHHcCCCC--CCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHH
Confidence 99999974211122222478999999998877653 3689998877667888999999999999999999999999999
Q ss_pred hhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCC
Q 017495 171 EYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFP 250 (370)
Q Consensus 171 ~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~ 250 (370)
+|+..+++..+.|++.|...+......++..++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.+
T Consensus 165 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~ 244 (364)
T 3p9c_A 165 EYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFP 244 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCT
T ss_pred HHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcC
Confidence 99999999999999999998888888888888767888999999999999999999999999999999999999999888
Q ss_pred CCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh
Q 017495 251 GVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ 330 (370)
Q Consensus 251 rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 330 (370)
+++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+..
T Consensus 245 ~v~~~~~D~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~ 324 (364)
T 3p9c_A 245 GVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAH 324 (364)
T ss_dssp TEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCcCCCCCCCCEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhc
Confidence 99999999998888779999999999999999999999999999999999999999877544332223445678888854
Q ss_pred cCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 331 TTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 331 ~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..+++.||.++|+++|++|||+.++++++.+..++||++|
T Consensus 325 ~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 325 NPGGRERYEREFQALARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp CSSCCCCBHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred ccCCccCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEeC
Confidence 4589999999999999999999999999999999999998
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-54 Score=407.51 Aligned_cols=329 Identities=23% Similarity=0.369 Sum_probs=291.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
.+.+..|.+++.||+.+++|++|++|||||+|.++ ++|+|++|||+++|+ ++..++|||++|++.|+++
T Consensus 6 ~~~~~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~-------~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~ 74 (353)
T 4a6d_A 6 DQAYRLLNDYANGFMVSQVLFAACELGVFDLLAEA-------PGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLK 74 (353)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHS-------SSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHhcC-------CCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEE
Confidence 36788899999999999999999999999999875 258999999999999 9999999999999999998
Q ss_pred ccccCCCCCccccceecchhhh-hhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccC---CChhhh
Q 017495 97 CSLQNGDNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG---MTQFEY 172 (370)
Q Consensus 97 ~~~~~~~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g---~~~~~~ 172 (370)
+.. +.+ ++.|++|+.++ ++..+++ .++.+++.+. ....+..|.+|.++++++.++++..+| .++|++
T Consensus 75 ~~~---~~~--~~~y~~t~~s~~~l~~~~~---~~~~~~~~~~-~~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~ 145 (353)
T 4a6d_A 75 VET---RGG--KAFYRNTELSSDYLTTVSP---TSQCSMLKYM-GRTSYRCWGHLADAVREGRNQYLETFGVPAEELFTA 145 (353)
T ss_dssp EEE---ETT--EEEEEECHHHHHHHSTTST---TCCHHHHHHH-HHTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHH
T ss_pred Eec---cCc--cceeeCCHHHHHHhhcCCc---hHHHHHHHHh-CHHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHH
Confidence 642 112 56899999987 5666665 7888887765 356788999999999999999988887 468899
Q ss_pred ccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC----
Q 017495 173 LGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---- 248 (370)
Q Consensus 173 ~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---- 248 (370)
+.++++....|+++|...+......++..++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 146 ~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~ 224 (353)
T 4a6d_A 146 IYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSF 224 (353)
T ss_dssp HTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC
T ss_pred HhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhh
Confidence 9999999999999999988888888998887 88889999999999999999999999999999999999887653
Q ss_pred --CCCCeEEeccCCC-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh
Q 017495 249 --FPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL 325 (370)
Q Consensus 249 --~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~ 325 (370)
.+||+++.+|+++ +.|.+|+|++.++||+|+|+++.++|++++++|+|||+|+|+|.+.+++...+ .....+|+
T Consensus 225 ~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~---~~~~~~dl 301 (353)
T 4a6d_A 225 QEEEQIDFQEGDFFKDPLPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP---LLTQLYSL 301 (353)
T ss_dssp --CCSEEEEESCTTTSCCCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC---HHHHHHHH
T ss_pred cccCceeeecCccccCCCCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC---HHHHHHHH
Confidence 2789999999998 55566999999999999999999999999999999999999999988754433 45567889
Q ss_pred HHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 326 FMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 326 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.|+..+ +|++||.+||+++|++|||+.+++++++...++|+++|
T Consensus 302 ~ml~~~-~g~ert~~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArK 345 (353)
T 4a6d_A 302 NMLVQT-EGQERTPTHYHMLLSSAGFRDFQFKKTGAIYDAILARK 345 (353)
T ss_dssp HHHHSS-SCCCCCHHHHHHHHHHHTCEEEEEECCSSSCEEEEEEC
T ss_pred HHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEEcCCceEEEEEEe
Confidence 998875 89999999999999999999999999999999999998
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=402.19 Aligned_cols=353 Identities=55% Similarity=1.019 Sum_probs=302.4
Q ss_pred CChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhc
Q 017495 12 TSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLAS 91 (370)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 91 (370)
....+.+.+..+++++.+++.+++|++|++|||||+|.+.+ ||++|+|++|||+++++.+|.++..|+||||+|++
T Consensus 14 ~~~~~~~~~~~~~~l~~~~~~~~~l~~a~~Lglfd~L~~~~----gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~ 89 (368)
T 3reo_A 14 THSSDEEANLFAMQLASAAVLPMALKAAIELDVLEIMAKSV----PPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLAS 89 (368)
T ss_dssp ---CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHHHC----CTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchhHHhhcC----CCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHh
Confidence 34467889999999999999999999999999999998710 13457999999999983233334599999999999
Q ss_pred CCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhh
Q 017495 92 YDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFE 171 (370)
Q Consensus 92 ~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~ 171 (370)
.|+|++...++++|+.+++|++|+.++.|..+.. +.++++++.+..++.+++.|.+|.+++++|.++|+..+|.++|+
T Consensus 90 ~gll~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~ 167 (368)
T 3reo_A 90 YSVVTYTLRELPSGKVERLYGLAPVCKFLTKNED--GVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFD 167 (368)
T ss_dssp TTSEEEEEEECTTSCEEEEEEECTTHHHHSCCTT--SCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHH
T ss_pred CCCeEEecccCCCCcccceeCcCHHHHHHhCCCC--CCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHH
Confidence 9999974111122222378999999998876653 37899988877778899999999999999999999999999999
Q ss_pred hccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCC
Q 017495 172 YLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG 251 (370)
Q Consensus 172 ~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~r 251 (370)
|+..+++..+.|+++|...+......++..++++++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++
T Consensus 168 ~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 247 (368)
T 3reo_A 168 YHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSG 247 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCC
Confidence 99999999999999999988887888888876677889999999999999999999999999999999999999998889
Q ss_pred CeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 252 v~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
++++.+|+++++|.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.............+++.|+...
T Consensus 248 v~~~~~d~~~~~p~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 327 (368)
T 3reo_A 248 VEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYN 327 (368)
T ss_dssp EEEEECCTTTCCCCCSEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEecCCCCCCCCCCEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhc
Confidence 99999999988887799999999999999999999999999999999999999998765443322334566788887654
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+++.|+.++|+++|++|||+.+++.+..+..+++|++|
T Consensus 328 ~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~~~vie~~k 366 (368)
T 3reo_A 328 PGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEFLK 366 (368)
T ss_dssp SBCCCCCHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred CCCccCCHHHHHHHHHHCCCeeeEEEEeCCCcEEEEEEe
Confidence 489999999999999999999999999999999999987
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-49 Score=369.03 Aligned_cols=325 Identities=24% Similarity=0.323 Sum_probs=288.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
...+....+.+++.+++.+++|++++++|||++|.++ |+|++|||+++|+ +++.++|||++|++.|+
T Consensus 18 ~~~~~~~~l~~~~~~~~~~~~l~~a~~lglf~~l~~g---------~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~ 84 (348)
T 3lst_A 18 DRLQSALALYEEAMGYTYAAALRAAAAVGVADHLVDG---------PRTPAELAAATGT----DADALRRVLRLLAVRDV 84 (348)
T ss_dssp CHHHHHHHHHHHHTTHHHHHHHHHHHHHTGGGGGTTS---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTS
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHcCchhHhhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCC
Confidence 3446888999999999999999999999999999875 8999999999999 99999999999999999
Q ss_pred eeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhcc
Q 017495 95 LRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLG 174 (370)
Q Consensus 95 l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~ 174 (370)
|++. +++|++|+.++.|..+++ .++.+++.+..++.+++.|.+|++++++|.++++..+|.++|+++.
T Consensus 85 l~~~---------~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~ 152 (348)
T 3lst_A 85 VRES---------DGRFALTDKGAALRSDSP---VPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFD 152 (348)
T ss_dssp EEEE---------TTEEEECTTTGGGSTTSS---SCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHT
T ss_pred EEec---------CCEEecCHHHHHHhcCCC---ccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHH
Confidence 9962 588999999998877665 6788888776667788999999999999999999999988999999
Q ss_pred CCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-----C
Q 017495 175 TDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-----F 249 (370)
Q Consensus 175 ~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-----~ 249 (370)
++++....|++.|...+......+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.++...+. .
T Consensus 153 ~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~ 231 (348)
T 3lst_A 153 GDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVA 231 (348)
T ss_dssp TCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGT
T ss_pred hCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCC
Confidence 99999999999999988888888888887 88899999999999999999999999999999999877763221 1
Q ss_pred CCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh
Q 017495 250 PGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA 329 (370)
Q Consensus 250 ~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 329 (370)
++|+++.+|+++++|..|+|++.++||+|+++++.++|++++++|||||+|+|.|.+.++.... .....+++.|+.
T Consensus 232 ~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~ 307 (348)
T 3lst_A 232 GRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLA 307 (348)
T ss_dssp TSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHH
T ss_pred CCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhh
Confidence 5799999999887774499999999999999999999999999999999999999988764222 234567777776
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
. .+++.++.++|.++|+++||+++++++.....+++|++|
T Consensus 308 ~-~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~p 347 (348)
T 3lst_A 308 A-RTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSIAVGVP 347 (348)
T ss_dssp T-TSCCCCBHHHHHHHHHHTTEEEEEEEECSSSCEEEEEEE
T ss_pred c-CCCcCCCHHHHHHHHHHCCCceEEEEECCCCcEEEEEEe
Confidence 6 488999999999999999999999999878899999975
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-49 Score=371.51 Aligned_cols=330 Identities=23% Similarity=0.403 Sum_probs=292.3
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHH
Q 017495 10 NATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLL 89 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L 89 (370)
......+.....++++++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|
T Consensus 29 ~~~~~~~~~~~~~l~~l~~~~~~~~~l~~a~~lglf~~l~~g---------~~t~~eLA~~~g~----~~~~l~rlLr~L 95 (369)
T 3gwz_A 29 NPGTAARAAAEETVNDILQGAWKARAIHVAVELGVPELLQEG---------PRTATALAEATGA----HEQTLRRLLRLL 95 (369)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGGTTS---------CEEHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHCChhhhhcCC---------CCCHHHHHHHHCc----CHHHHHHHHHHH
Confidence 344445567889999999999999999999999999999975 8999999999999 999999999999
Q ss_pred hcCCceeccccCCCCCccccc-eecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCC
Q 017495 90 ASYDILRCSLQNGDNGQVERV-YGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMT 168 (370)
Q Consensus 90 ~~~g~l~~~~~~~~~g~~~~~-y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 168 (370)
++.|+|++.. ++. |++|+.++.|..+.+ .++.+++.+...+..++.|.+|.+.++++.++|+..+|.+
T Consensus 96 ~~~g~l~~~~--------~~~~y~~t~~s~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~ 164 (369)
T 3gwz_A 96 ATVGVFDDLG--------HDDLFAQNALSAVLLPDPA---SPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTS 164 (369)
T ss_dssp HHTTSSEECS--------STTEEECCHHHHTTSCCTT---CHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSC
T ss_pred HhCCCEEEeC--------CCceEecCHHHHHHhcCCc---hhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCC
Confidence 9999999631 467 999999998877665 6788888776666678999999999999999999889988
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 248 (370)
+|+|+.++++....|++.|..........++..++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 165 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 243 (369)
T 3gwz_A 165 FWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARE 243 (369)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHH
Confidence 99999999999999999999988888888888887 88889999999999999999999999999999999888887764
Q ss_pred -------CCCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh
Q 017495 249 -------FPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV 320 (370)
Q Consensus 249 -------~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 320 (370)
.++|+++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++.... . .
T Consensus 244 ~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~----~-~ 318 (369)
T 3gwz_A 244 LLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAA----S-T 318 (369)
T ss_dssp HHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCH----H-H
T ss_pred hhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC----c-h
Confidence 268999999999877755 99999999999999999999999999999999999999998764321 2 4
Q ss_pred hhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe-cCCCeeEEEEeC
Q 017495 321 FEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC-CAYNSWVMEFHK 370 (370)
Q Consensus 321 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~-~~~~~~~~e~~k 370 (370)
..+++.|+... +++.++.++|+++|+++||+++++++ ..+..++||++|
T Consensus 319 ~~~d~~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 319 LFVDLLLLVLV-GGAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp HHHHHHHHHHH-SCCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred hHhhHHHHhhc-CCccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 56788887764 89999999999999999999999999 678899999985
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=365.99 Aligned_cols=347 Identities=30% Similarity=0.477 Sum_probs=291.4
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc
Q 017495 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF 80 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~ 80 (370)
|+|++-..+ ..+..+....+.+++.+++.+++|++++++|||+.|..+ ++|+|++|||+++++ +|.+++
T Consensus 1 ~~~~~~~~~---~~~~~~a~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~-------~~~~t~~ela~~~~~-~~~~~~ 69 (352)
T 1fp2_A 1 MASSINGRK---PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNH-------GKPISLSNLVSILQV-PSSKIG 69 (352)
T ss_dssp -------CC---STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHH-------TSCEEHHHHHHHHTC-CGGGHH
T ss_pred CCccccCCC---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHCChhhhhhhc-------CCCccHHHHHHHhCc-CCCChH
Confidence 677765543 356667888999999999999999999999999999874 138999999999999 444478
Q ss_pred hHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHh-cCCc
Q 017495 81 LLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVIL-EGGI 159 (370)
Q Consensus 81 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~ 159 (370)
.++|||++|++.|+|++.. +| ++.|++|+.++.|..+++ .++++++.+..++.++..|.+|++.++ +|.+
T Consensus 70 ~l~rlLr~L~~~gll~~~~----~~--~~~y~~t~~s~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~ 140 (352)
T 1fp2_A 70 NVRRLMRYLAHNGFFEIIT----KE--EESYALTVASELLVRGSD---LCLAPMVECVLDPTLSGSYHELKKWIYEEDLT 140 (352)
T ss_dssp HHHHHHHHHHHTTSEEEEE----SS--SEEEEECHHHHTTSTTSS---SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCC
T ss_pred HHHHHHHHHHhCCeEEEec----CC--CCeEeCCHHHHHHhCCCC---ccHHHHHHHhcCchHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999631 01 478999999998887765 678888887666778899999999999 8888
Q ss_pred cchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEee
Q 017495 160 PFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYR-GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFD 238 (370)
Q Consensus 160 ~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D 238 (370)
+|+..+|.++|+++.++++....|++.|........+. +..++ .+++..+|||||||+|.++..+++++|+++++++|
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D 219 (352)
T 1fp2_A 141 LFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFD 219 (352)
T ss_dssp HHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEE
T ss_pred hHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEee
Confidence 99888898999999999999999999999888776666 66661 27778999999999999999999999999999999
Q ss_pred hhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCC---CcEEEEEeecCCCCCCCCc
Q 017495 239 LPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPE---NGKVIIVESILPLVPENQA 315 (370)
Q Consensus 239 ~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p---gG~lli~e~~~~~~~~~~~ 315 (370)
+|.+++.+++..+++++.+|+++++|..|+|++.++||||+++++.++|++++++|+| ||+|+|.|...++....+.
T Consensus 220 ~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~ 299 (352)
T 1fp2_A 220 RPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ 299 (352)
T ss_dssp CHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH
T ss_pred CHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccc
Confidence 9999999988778999999998877767999999999999999999999999999999 9999999998876432211
Q ss_pred cchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 316 SSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 316 ~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.......+++.|+. . ++..++.++|.++|+++||+++++++.++..++||++|
T Consensus 300 ~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 300 VTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp HHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred hhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCeeEEEecCCCcEEEEEeC
Confidence 11234466777765 3 58889999999999999999999999888889999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=362.43 Aligned_cols=342 Identities=30% Similarity=0.494 Sum_probs=290.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCce
Q 017495 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
..+....+.+++.+++.+++|++++++|||+.|..+ ++|+|++|||+++|+ +|.+++.++||||+|++.|+|
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~l~~a~~lgif~~L~~~-------~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll 78 (358)
T 1zg3_A 7 LYHAQIHLYKHVYNFVSSMALKSAMELGIADAIHNH-------GKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFF 78 (358)
T ss_dssp CTTHHHHHHHHHTTHHHHHHHHHHHHHTHHHHHHHH-------TSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHCChHhHHhhc-------CCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcE
Confidence 334557788999999999999999999999999874 138999999999999 555688999999999999999
Q ss_pred ecccc-CCC-CCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC--CccchhccCCChhh
Q 017495 96 RCSLQ-NGD-NGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEG--GIPFRRAYGMTQFE 171 (370)
Q Consensus 96 ~~~~~-~~~-~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~g~~~~~ 171 (370)
++... .+. +|..++.|++|+.+++|+.+++ .++++++.+..++.+++.|.+|++.+++| .++|+..+|.++|+
T Consensus 79 ~~~~~~~~~~~g~~~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~ 155 (358)
T 1zg3_A 79 AKTIVKGKEGDEEEEIAYSLTPPSKLLISGKP---TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWD 155 (358)
T ss_dssp EEEEECCSSSSCCCEEEEEECHHHHTTCTTST---TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHH
T ss_pred EEecccccccCCCCCCEEeCCHHHHHHhCCCC---ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHH
Confidence 96300 000 1111378999999998887766 68889888776677889999999999998 67888888989999
Q ss_pred hccCCchHHH--HHHHHHHhchHHHHHHHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC
Q 017495 172 YLGTDPRFNG--VFNEAMSNHSALVMNKILDVYR-GFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248 (370)
Q Consensus 172 ~~~~~~~~~~--~~~~~m~~~~~~~~~~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 248 (370)
++.++++..+ .|++.|........ .+++.++ .+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++
T Consensus 156 ~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 234 (358)
T 1zg3_A 156 FLNKDSESSTLSMFQDAMASDSRMFK-LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG 234 (358)
T ss_dssp HHTSGGGHHHHHHHHHHHHHHHHTHH-HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC
T ss_pred HHhcChhhhhHHHHHHHHhcccHHHH-HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc
Confidence 9999999999 99999998777655 7777772 266778999999999999999999999999999999999998887
Q ss_pred CCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCC---CcEEEEEeecCCCCCCCCccchhhhhhhh
Q 017495 249 FPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPE---NGKVIIVESILPLVPENQASSHIVFEQDL 325 (370)
Q Consensus 249 ~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~p---gG~lli~e~~~~~~~~~~~~~~~~~~~d~ 325 (370)
..+++++.+|+++++|..|+|++.++||+|+++++.++|++++++|+| ||+|+|.|...++....+........+++
T Consensus 235 ~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 314 (358)
T 1zg3_A 235 NENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 314 (358)
T ss_dssp CSSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHH
T ss_pred CCCcEEEeCccCCCCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCH
Confidence 777999999999877767999999999999999999999999999999 99999999988764322111134566788
Q ss_pred HHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 326 FMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 326 ~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.|+.. .+++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 315 ~~~~~-~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 315 VMLTM-FLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp HHHHH-HSCCCEEHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred HHhcc-CCCCCCCHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 77765 478999999999999999999999999888889999986
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=362.08 Aligned_cols=345 Identities=44% Similarity=0.789 Sum_probs=275.9
Q ss_pred HHHHHHH--HHHHhhHHHHHHHHHHhcChHHHHhhcccccCC-CCCCCCHHHHHHHCCCC--CCCCcchHHHHHHHHhcC
Q 017495 18 EIGKLAV--RLANAAVLPMVLKSAIELNVIDIISAASAAEDG-HGELLSASKIAARLPTK--NPDAPFLLDRMLSLLASY 92 (370)
Q Consensus 18 ~~~~~~~--~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~-~~~~~t~~ela~~~~~~--~~~~~~~l~~~L~~L~~~ 92 (370)
+....+. +++.+++.+++|++++++|||+.|... | |++++|++|||++++++ +|.+++.++||||+|++.
T Consensus 21 ~~~~~l~~~~l~~~~~~~~~l~~a~~lgif~~L~~~-----g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~ 95 (372)
T 1fp1_D 21 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA-----TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 95 (372)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC-----SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHHhc-----CCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhC
Confidence 4555666 999999999999999999999999875 2 22239999999999982 455688999999999999
Q ss_pred CceeccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcC-CccchhccCCChhh
Q 017495 93 DILRCSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEG-GIPFRRAYGMTQFE 171 (370)
Q Consensus 93 g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~g~~~~~ 171 (370)
|+|++..+++++|+.++.|++|+.+++|+.+++ ..++++++.+..++.+++.|.+|++.++++ .++|+..+|.++|+
T Consensus 96 gll~~~~~~~~~g~~~~~y~~t~~s~~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~ 173 (372)
T 1fp1_D 96 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES--RGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYE 173 (372)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTCT--TCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------
T ss_pred CceEecccccCCCCcCCeEecCHHHHHHhCCCC--CCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHH
Confidence 999963100011111368999999998887653 146888887776677889999999999998 88898888988999
Q ss_pred hccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCC
Q 017495 172 YLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPG 251 (370)
Q Consensus 172 ~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~r 251 (370)
++.++++....|++.|..........+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.+++.++
T Consensus 174 ~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~ 253 (372)
T 1fp1_D 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSG 253 (372)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTT
T ss_pred HHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCC
Confidence 99999999999999999888777788888876577889999999999999999999999999999999999999988788
Q ss_pred CeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc
Q 017495 252 VEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT 331 (370)
Q Consensus 252 v~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 331 (370)
++++.+|+++++|..|+|++.++||||+++++..+|++++++|+|||+|+|.|...++....+........+++.|+..
T Consensus 254 v~~~~~d~~~~~~~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~- 332 (372)
T 1fp1_D 254 IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFIT- 332 (372)
T ss_dssp EEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHH-
T ss_pred CEEEeCCcccCCCCCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHhc-
Confidence 9999999998777679999999999999999999999999999999999999998876533221111345677777654
Q ss_pred CCCcccCHHHHHHHHHhCCCCcceEEecCCC-eeEEEEeC
Q 017495 332 TGGRERSKKEYEALAKNSGFSGLEIVCCAYN-SWVMEFHK 370 (370)
Q Consensus 332 ~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~-~~~~e~~k 370 (370)
.+++.++.++|.++|+++||+++++++...+ .++||++|
T Consensus 333 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 333 VGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred cCCccCCHHHHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 3788999999999999999999999985433 69999986
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=363.44 Aligned_cols=315 Identities=26% Similarity=0.367 Sum_probs=277.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccC
Q 017495 22 LAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQN 101 (370)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~ 101 (370)
.+++++.+++.+++|++++++|||++|.++ |+|++|||+++|+ +++.++|||++|++.|++.+..
T Consensus 8 ~l~~~~~g~~~~~~l~~a~~lglf~~l~~g---------~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~~-- 72 (332)
T 3i53_A 8 IGLRALADLATPMAVRVAATLRVADHIAAG---------HRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRDG-- 72 (332)
T ss_dssp SCHHHHTCCHHHHHHHHHHHHTHHHHHHTT---------CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--
T ss_pred HHHHHHHhhHHHHHHHHHHHcChHHHHhcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEecC--
Confidence 468899999999999999999999999875 8999999999999 9999999999999999999631
Q ss_pred CCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcCCccchhccCCChhhhccCCchHH
Q 017495 102 GDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFM-ESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFN 180 (370)
Q Consensus 102 ~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~ 180 (370)
++.|.+|+.++.+..+++ .++.+++.+......+ ..|.+|+++++++.++|+..+|.++|+++.++++..
T Consensus 73 ------~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (332)
T 3i53_A 73 ------QGVYGLTEFGEQLRDDHA---AGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLS 143 (332)
T ss_dssp ------TSBEEECTTGGGGSTTCT---TCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHH
T ss_pred ------CCeEEcCHhHHHHhcCCc---hhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHH
Confidence 488999999998876655 6788888765444556 899999999999999998889988999999999999
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCe
Q 017495 181 GVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVE 253 (370)
Q Consensus 181 ~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~ 253 (370)
..|++.|........+.+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++ .++|+
T Consensus 144 ~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~ 222 (332)
T 3i53_A 144 ASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQ 222 (332)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeE
Confidence 99999999887776777777776 77789999999999999999999999999999999888887764 26899
Q ss_pred EEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 254 HVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 254 ~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++. .+ ...+++.|+.. .
T Consensus 223 ~~~~d~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~-----~~~~d~~~~~~-~ 294 (332)
T 3i53_A 223 VVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE--HA-----GTGMDLRMLTY-F 294 (332)
T ss_dssp EEECCTTSCCCCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-----C-----CHHHHHHHHHH-H
T ss_pred EecCCCCCCCCCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC--Cc-----cHHHHHHHHhh-C
Confidence 9999999877754 99999999999999999999999999999999999999988764 11 24677777766 4
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++.++.++|.++|+++||+++++++.+. .+++|++|
T Consensus 295 ~~~~~t~~e~~~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 295 GGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp SCCCCCHHHHHHHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 89999999999999999999999999988 99999975
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-47 Score=354.22 Aligned_cols=319 Identities=24% Similarity=0.412 Sum_probs=282.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 18 EIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++...+.+++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+|++
T Consensus 7 ~~~~~l~~~~~~~~~~~~l~~~~~lgi~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~ 73 (334)
T 2ip2_A 7 AAARNLIQVVTGEWKSRCVYVATRLGLADLIESG---------IDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQG 73 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTT---------CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCcHHHHhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEe
Confidence 5668899999999999999999999999999875 8999999999999 99999999999999999996
Q ss_pred cccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCc
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDP 177 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~ 177 (370)
.. ++.|++|+.++.|. +++ .++.+++.+..+..+ ..|.+|++.++++.++|+..+|.++|+++.+++
T Consensus 74 ~~--------~~~y~~t~~s~~l~-~~~---~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~ 140 (334)
T 2ip2_A 74 DT--------RDGYANTPTSHLLR-DVE---GSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCP 140 (334)
T ss_dssp ET--------TTEEEECHHHHTTS-SST---TCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCH
T ss_pred cC--------CCeEecCHHHHHHh-CCC---ccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhCh
Confidence 31 47899999999887 654 678888877655545 899999999999999998888989999999999
Q ss_pred hHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------C
Q 017495 178 RFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------P 250 (370)
Q Consensus 178 ~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~ 250 (370)
+....|++.| ..+......+++.++ +++ .+|||||||+|..+..+++.+|+.+++++|+|.+++.+++. +
T Consensus 141 ~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 217 (334)
T 2ip2_A 141 DAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGE 217 (334)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTT
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCC
Confidence 9999999999 888777888888886 777 99999999999999999999999999999998887776542 5
Q ss_pred CCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh
Q 017495 251 GVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA 329 (370)
Q Consensus 251 rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 329 (370)
+++++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|...++... ......+++.|+.
T Consensus 218 ~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~----~~~~~~~~~~~~~ 293 (334)
T 2ip2_A 218 RVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP----SPMSVLWDVHLFM 293 (334)
T ss_dssp SEEEEESCTTTCCCSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC----CHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC----cchhHHhhhHhHh
Confidence 7999999999877765 9999999999999999999999999999999999999998765422 1345567777776
Q ss_pred hcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 330 QTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 330 ~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.. +++.++.++|.++|+++||+++++++.++..++||++|
T Consensus 294 ~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 333 (334)
T 2ip2_A 294 AC-AGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333 (334)
T ss_dssp HH-SCCCCBHHHHHHHHHHTTEEEEEEEEETTTEEEEEEEE
T ss_pred hC-CCcCCCHHHHHHHHHHCCCceeEEEECCCCCEEEEEEe
Confidence 54 78899999999999999999999999988899999986
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-45 Score=346.19 Aligned_cols=337 Identities=24% Similarity=0.370 Sum_probs=279.3
Q ss_pred CCCCCCCCCCCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc
Q 017495 1 MANSKPKRNNATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF 80 (370)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~ 80 (370)
|+-+.|.+-... .++.+..+++++.+++.+++|++++++|||+.|..+ |+|++|||+++|+ ++.
T Consensus 1 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~eLA~~~g~----~~~ 64 (374)
T 1qzz_A 1 MSSSSPGEPLEP---TDQDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAG---------ADTLAGLADRTDT----HPQ 64 (374)
T ss_dssp ---------CCC---CHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHTT---------CCSHHHHHHHHTC----CHH
T ss_pred CCCCCCCCCCCC---CchHHHHHHHHHHhhHHHHHHHHHHHcChHHHHhCC---------CCCHHHHHHHhCc----CHH
Confidence 455555543322 455778899999999999999999999999999765 8999999999999 999
Q ss_pred hHHHHHHHHhcCCceeccccCCCCCcccc--ceecchhhhhhhcCCCCCCCChhHHHHhhcChhHH-HhhhhhHHHHhcC
Q 017495 81 LLDRMLSLLASYDILRCSLQNGDNGQVER--VYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFM-ESWYHLKDVILEG 157 (370)
Q Consensus 81 ~l~~~L~~L~~~g~l~~~~~~~~~g~~~~--~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g 157 (370)
.++|||++|++.|+|++. + ++ .|++|+.++.|..+++ .++.+++.+...+..+ ..|.+|.+.+++|
T Consensus 65 ~l~r~Lr~L~~~Gll~~~----~----~~~~~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 133 (374)
T 1qzz_A 65 ALSRLVRHLTVVGVLEGG----E----KQGRPLRPTRLGMLLADGHP---AQQRAWLDLNGAVSHADLAFTGLLDVVRTG 133 (374)
T ss_dssp HHHHHHHHHHHTTSEECC----C----C-CCCCEECTTGGGGSTTCT---TCHHHHHCTTSHHHHHHGGGGGHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEe----C----CCCeEEEEChHHHhhcCCCc---ccHHHHHHHcCChhhHHHHHHHHHHHHhcC
Confidence 999999999999999963 1 35 8999999998887765 6788888776444566 8999999999999
Q ss_pred CccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEe
Q 017495 158 GIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISF 237 (370)
Q Consensus 158 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~ 237 (370)
.++++..+|.++|+++..+++....|++.|..........++..++ +++..+|||||||+|.++..+++.+|+++++++
T Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~ 212 (374)
T 1qzz_A 134 RPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLV 212 (374)
T ss_dssp CCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEE
T ss_pred CChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEE
Confidence 9999888898999999888999999999998777766777888776 778899999999999999999999999999999
Q ss_pred ehhhHHHhCCCC-------CCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee--cC
Q 017495 238 DLPHVLANAPSF-------PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES--IL 307 (370)
Q Consensus 238 D~p~~~~~a~~~-------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~--~~ 307 (370)
|++.+++.+++. ++++++.+|+++++|.. |+|++.+++|+|+++++..+|++++++|+|||+|+|.|. ..
T Consensus 213 D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (374)
T 1qzz_A 213 ELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292 (374)
T ss_dssp ECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH--
T ss_pred eCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhc
Confidence 998888776542 47999999998877765 999999999999999889999999999999999999998 76
Q ss_pred CCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCe-----eEEEEeC
Q 017495 308 PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNS-----WVMEFHK 370 (370)
Q Consensus 308 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~-----~~~e~~k 370 (370)
++... ......+++.|+... ++..++.++|.++|+++||+++++.+.+... ++++++|
T Consensus 293 ~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 293 GDGAD----RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355 (374)
T ss_dssp ---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEE
T ss_pred CCCCC----cchhhhcchHHHHhC-CCcCCCHHHHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEE
Confidence 54321 133456677776654 7889999999999999999999999988777 8999875
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=342.25 Aligned_cols=322 Identities=18% Similarity=0.241 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 18 EIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+....+.+++.+++.+++|++++++|||++|... ++|+|++|||+++|+ +++.++|||++|++.|+|++
T Consensus 14 ~a~~~l~~l~~g~~~~~~l~~a~~lgifd~L~~~-------~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 14 EAQRLAQEIAFGPVVFQVSRLMLKFGIFQLLSGK-------REGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTC-------TTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhCHHHHHHhc-------CCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEe
Confidence 5677899999999999999999999999999982 138999999999999 99999999999999999986
Q ss_pred cccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccC--CChhhhccC
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYG--MTQFEYLGT 175 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g--~~~~~~~~~ 175 (370)
. +++|++|+.+++|..+++ ....+.+ ..+..++.|.+|++++++|.+++...+| .++|+++.+
T Consensus 83 ~---------~~~y~~t~~s~~L~~~~~-----~~~~~~~-~~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~ 147 (363)
T 3dp7_A 83 E---------EDRYVLAKAGWFLLNDKM-----ARVNMEF-NHDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQ 147 (363)
T ss_dssp E---------TTEEEECHHHHHHHHCHH-----HHHHHHH-HHHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGG
T ss_pred c---------CCEEecccchHHhhCCCc-----ccchhee-ecHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhh
Confidence 2 478999999998887654 2222322 2356789999999999999988888888 689999998
Q ss_pred CchHHH----HHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--
Q 017495 176 DPRFNG----VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-- 249 (370)
Q Consensus 176 ~~~~~~----~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-- 249 (370)
+++..+ .|+..|..... ..++..+. ..+..+|||||||+|.++..+++++|+++++++|+|.+++.+++.
T Consensus 148 ~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 223 (363)
T 3dp7_A 148 LPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTA 223 (363)
T ss_dssp SCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHH
Confidence 887665 35555544322 23344443 356789999999999999999999999999999998888877642
Q ss_pred -----CCCeEEeccCCCC---CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-cchh
Q 017495 250 -----PGVEHVGGDMFEN---VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-SSHI 319 (370)
Q Consensus 250 -----~rv~~~~~D~~~~---~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-~~~~ 319 (370)
++|+++.+|++++ .|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.+.++...... ....
T Consensus 224 ~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~ 303 (363)
T 3dp7_A 224 GLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLT 303 (363)
T ss_dssp TCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHH
T ss_pred hcCcccceEEEEccccccCCCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHH
Confidence 4799999999984 5644 9999999999999999999999999999999999999998876432110 0011
Q ss_pred hhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 320 VFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 320 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
....++.|+.. .+++.++.++|.++|++|||+++++++.. .+.++|+++|
T Consensus 304 ~~~~~~~~~~~-~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~ 354 (363)
T 3dp7_A 304 QISLYFTAMAN-GNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRL 354 (363)
T ss_dssp HHHHHHHHSSC-SSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEE
T ss_pred HhhhhHHhhhC-CCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEee
Confidence 12233333332 36788999999999999999999999764 5689999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-44 Score=339.98 Aligned_cols=324 Identities=24% Similarity=0.371 Sum_probs=280.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCcee
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILR 96 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~ 96 (370)
+....++++++.+++.+++|.++.++|||+.|.++ |+|++|||+++++ ++..++|||++|++.|+|+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~ 83 (360)
T 1tw3_A 17 QIDALRTLIRLGSLHTPMVVRTAATLRLVDHILAG---------ARTVKALAARTDT----RPEALLRLIRHLVAIGLLE 83 (360)
T ss_dssp CHHHHHHHHHHHCSHHHHHHHHHHHTTHHHHHHTT---------CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEE
T ss_pred ccchHHHHHHHHhHHHHHHHHHHHHhCHHHHHhCC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEE
Confidence 35578889999999999999999999999999765 8999999999999 9999999999999999999
Q ss_pred ccccCCCCCccccceecchhhhhhhcCCCCCCCChhHHHHhhcChh-HHHhhhhhHHHHhcCCccchhccCCChhhhccC
Q 017495 97 CSLQNGDNGQVERVYGAAPICKFLIKNQDDDDGSVAPLFLLHHDKV-FMESWYHLKDVILEGGIPFRRAYGMTQFEYLGT 175 (370)
Q Consensus 97 ~~~~~~~~g~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 175 (370)
+.. ++.|++|+.+++|..+++ .++.+++.+...+. .+..|.+|.+.+++|.++++..+|.++|+++..
T Consensus 84 ~~~--------~g~y~~t~~s~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~ 152 (360)
T 1tw3_A 84 EDA--------PGEFVPTEVGELLADDHP---AAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAG 152 (360)
T ss_dssp EEE--------TTEEEECTTGGGGSTTST---TCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHT
T ss_pred ecC--------CCeEEeCHHHHHHhcCCc---hhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHh
Confidence 631 478999999998888776 67888776654333 678999999999999988888889899999988
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC------
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF------ 249 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~------ 249 (370)
+++....|...|..........+++.++ +++..+|||||||+|.++..+++.+|+++++++|++.+++.+++.
T Consensus 153 ~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~ 231 (360)
T 1tw3_A 153 RPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL 231 (360)
T ss_dssp CHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC
Confidence 9999999999998877776778888887 788899999999999999999999999999999988787766542
Q ss_pred -CCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec-CCCCCCCCccchhhhhhhhH
Q 017495 250 -PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI-LPLVPENQASSHIVFEQDLF 326 (370)
Q Consensus 250 -~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~-~~~~~~~~~~~~~~~~~d~~ 326 (370)
++++++.+|+++++|.. |+|++.++||+|+++++.++|++++++|+|||+|+|.|.. .++... ......+++.
T Consensus 232 ~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~----~~~~~~~~~~ 307 (360)
T 1tw3_A 232 SDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSF----NEQFTELDLR 307 (360)
T ss_dssp TTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC----SHHHHHHHHH
T ss_pred CCceEEEeCCCCCCCCCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC----cchhhhccHH
Confidence 48999999999877765 9999999999999999899999999999999999999988 654321 1234456777
Q ss_pred HhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCC-----eeEEEEeC
Q 017495 327 MLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYN-----SWVMEFHK 370 (370)
Q Consensus 327 ~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~-----~~~~e~~k 370 (370)
|+... ++..++.++|.++|+++||+++++.+.+.. .++|+++|
T Consensus 308 ~~~~~-~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 308 MLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred Hhhhc-CCcCCCHHHHHHHHHHCCCeEEEEEeCCCCcccCccEEEEEEe
Confidence 76654 788999999999999999999999988765 78999875
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-43 Score=327.50 Aligned_cols=314 Identities=21% Similarity=0.217 Sum_probs=272.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecccc
Q 017495 21 KLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQ 100 (370)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 100 (370)
+.+.+++.+++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 8 ~~l~~~~~~~~~~~~l~~~~~l~i~~~l~~~---------~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-- 72 (335)
T 2r3s_A 8 ALFFNTVNAYQRSAAIKAAVELNVFTAISQG---------IESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-- 72 (335)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTHHHHHTTS---------EECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChHHHHhcC---------CCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec--
Confidence 5788999999999999999999999999875 8999999999999 999999999999999999852
Q ss_pred CCCCCccccceecchhh-hhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchH
Q 017495 101 NGDNGQVERVYGAAPIC-KFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRF 179 (370)
Q Consensus 101 ~~~~g~~~~~y~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~ 179 (370)
++.|++|+.+ +++..+++ .++.+++.+..++..++.|.+|++.++++.++++ + |+++.++++.
T Consensus 73 -------~~~y~~t~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~-~~~~~~~~~~ 136 (335)
T 2r3s_A 73 -------AEGYRLTSDSAMFLDRQSK---FYVGDAIEFLLSPMITNGFNDLTAAVLKGGTAIS-----S-EGTLSPEHPV 136 (335)
T ss_dssp -------TTEEEECHHHHHHTCTTST---TCCGGGHHHHTCHHHHGGGTTHHHHHHHTSCCST-----T-TGGGSTTCTH
T ss_pred -------CCEEecCHHHHHHhccCCc---HHHHHHHHHhcchhhHHHHHhHHHHHhcCCCCCC-----C-cccccCCHHH
Confidence 4899999999 68877766 6778887776555788999999999999887654 3 7888888888
Q ss_pred HHHHHHHHHhchHHHHHHHHHhhcCC--CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------C
Q 017495 180 NGVFNEAMSNHSALVMNKILDVYRGF--DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------P 250 (370)
Q Consensus 180 ~~~~~~~m~~~~~~~~~~l~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~ 250 (370)
...|.+.|..........+++.++ + .+..+|||||||+|.++..+++.+|+.+++++|++.+++.+++. +
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~ 215 (335)
T 2r3s_A 137 WVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVAS 215 (335)
T ss_dssp HHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCc
Confidence 999999999888877788888887 6 78899999999999999999999999999999988777776642 4
Q ss_pred CCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh
Q 017495 251 GVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML 328 (370)
Q Consensus 251 rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 328 (370)
+++++.+|+++ +.+.. |+|++.+++|+|+++++.++|++++++|+|||+++|.|...++....+ .....+++.|+
T Consensus 216 ~v~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~ 292 (335)
T 2r3s_A 216 RYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP---PDAAAFSLVML 292 (335)
T ss_dssp GEEEEESCTTTSCCCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS---HHHHHHHHHHH
T ss_pred ceEEEecccccCCCCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc---hHHHHHHHHHH
Confidence 79999999998 66665 999999999999999999999999999999999999999876543222 34456677777
Q ss_pred hhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEe
Q 017495 329 AQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFH 369 (370)
Q Consensus 329 ~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~ 369 (370)
....++..++.++|.++|+++||+.+++.+.++..++++++
T Consensus 293 ~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 333 (335)
T 2r3s_A 293 ATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVA 333 (335)
T ss_dssp HHSSSCCCCCHHHHHHHHHHTTCSEEEEECCTTSSSEEEEE
T ss_pred eeCCCCCcCCHHHHHHHHHHCCCCeeeEEECCCCceeEEEe
Confidence 65447889999999999999999999999988777877764
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-42 Score=323.23 Aligned_cols=314 Identities=15% Similarity=0.263 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 16 QEEIGKLAVRLAN-AAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
..+...++.+++. +++.+++|++++++|||+.|.++ |+|++|||+++|+ +++.++|||++|++.|+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~~---------~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gl 93 (359)
T 1x19_A 27 LLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAEG---------PKDLATLAADTGS----VPPRLEMLLETLRQMRV 93 (359)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTS
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcCC---------CCCHHHHHHHhCc----ChHHHHHHHHHHHhCCC
Confidence 3466778888886 89999999999999999999875 8999999999999 99999999999999999
Q ss_pred eeccccCCCCCccccceecchhh-hhhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhc
Q 017495 95 LRCSLQNGDNGQVERVYGAAPIC-KFLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYL 173 (370)
Q Consensus 95 l~~~~~~~~~g~~~~~y~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~ 173 (370)
|++. ++.|++|+.+ .++..+++....++++++.+. ...+++.|.+|+++++++.+ |+++
T Consensus 94 l~~~---------~~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~~----------~~~~ 153 (359)
T 1x19_A 94 INLE---------DGKWSLTEFADYMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRGQKN----------FKGQ 153 (359)
T ss_dssp EEEE---------TTEEEECHHHHHHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSCC----------CCCS
T ss_pred eEee---------CCeEecCHHHHHHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhcCCC----------Cccc
Confidence 9963 3689999975 466655320014677777665 35678999999999998654 5667
Q ss_pred cCCch---HHHHHHHHHHhchH-HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-
Q 017495 174 GTDPR---FNGVFNEAMSNHSA-LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS- 248 (370)
Q Consensus 174 ~~~~~---~~~~~~~~m~~~~~-~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~- 248 (370)
.++++ ....|...|..... .....+++.++ +++..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++
T Consensus 154 ~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~ 232 (359)
T 1x19_A 154 VPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNEN 232 (359)
T ss_dssp SCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHH
T ss_pred ccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHH
Confidence 77788 88999999998887 77788888887 88889999999999999999999999999999999888887753
Q ss_pred ------CCCCeEEeccCCC-CCCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh
Q 017495 249 ------FPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF 321 (370)
Q Consensus 249 ------~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~ 321 (370)
.++++++.+|+++ +.+.+|+|++.++||+|+++++.++|++++++|+|||+|+|.|...++. ..+ ....
T Consensus 233 ~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~---~~~~ 308 (359)
T 1x19_A 233 AAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP-ENP---NFDY 308 (359)
T ss_dssp HHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT-TSC---CHHH
T ss_pred HHhcCCCCCEEEEeCccccCCCCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC-CCc---hHHH
Confidence 2469999999998 5666699999999999999889999999999999999999999988664 221 1122
Q ss_pred hhhhHHhhhcCCCcc----cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 322 EQDLFMLAQTTGGRE----RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 322 ~~d~~~~~~~~~~~~----~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+ .|+....+++. ++.++|.++|+++||+++++.+.+ ..++++++|
T Consensus 309 ~~--~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~vi~a~k 358 (359)
T 1x19_A 309 LS--HYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVRKY-DHLLVQAVK 358 (359)
T ss_dssp HH--HHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEEET-TEEEEEEEC
T ss_pred HH--HHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEecC-CceEEEEeC
Confidence 22 33332335666 899999999999999999999987 888999987
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=323.46 Aligned_cols=307 Identities=16% Similarity=0.238 Sum_probs=256.2
Q ss_pred HHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCC
Q 017495 23 AVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNG 102 (370)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 102 (370)
+++++.+++.+++|++++++|||++|.+ |+|++|||+++|+ +++.++|||++|++.|+|++.
T Consensus 28 l~~~~~~~~~~~~l~~a~~lgif~~l~~----------~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~---- 89 (352)
T 3mcz_A 28 LVKLSDQYRQSAILHYAVADKLFDLTQT----------GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE---- 89 (352)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTHHHHTTS----------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----
T ss_pred HHHHHHHHHHHHHHHHHHHCChHHHhCC----------CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec----
Confidence 8999999999999999999999999953 7999999999999 999999999999999999963
Q ss_pred CCCccccceecchhhh-hhhcCCCCCCCChhHHHHhhcChhHHHhhhhhHHHHhcCCcc-chhccCCChhhhccCCchHH
Q 017495 103 DNGQVERVYGAAPICK-FLIKNQDDDDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIP-FRRAYGMTQFEYLGTDPRFN 180 (370)
Q Consensus 103 ~~g~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~-~~~~~g~~~~~~~~~~~~~~ 180 (370)
++.|++|+.++ ++..+.+ .+++.++.+. ...++.|.+|++.+++|.+. |+. ..++..+++..
T Consensus 90 -----~~~y~~t~~s~~~l~~~~~---~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~------~~~~~~~~~~~ 153 (352)
T 3mcz_A 90 -----GDAFRNTALTERYLTTTSA---DYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQ------ESRFAHDTRAR 153 (352)
T ss_dssp -----TTEEEECHHHHHHHSTTCT---TCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSH------HHHTTTCHHHH
T ss_pred -----CCeeecCHHHHhhccCCCh---hhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCccc------ccccccCHHHH
Confidence 46799999997 5665555 7788777653 45778999999999998754 222 12346778888
Q ss_pred HHHHHHHHhchHHHHHHHHHhhcCCCC-CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCC
Q 017495 181 GVFNEAMSNHSALVMNKILDVYRGFDG-LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGV 252 (370)
Q Consensus 181 ~~~~~~m~~~~~~~~~~l~~~~~~~~~-~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv 252 (370)
..|.+.|...... +..++..++ +.+ ..+|||||||+|.++..+++.+|+.+++++|+|.+++.+++. +++
T Consensus 154 ~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v 231 (352)
T 3mcz_A 154 DAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRV 231 (352)
T ss_dssp HHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGE
T ss_pred HHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCce
Confidence 9999999874333 346777777 666 899999999999999999999999999999998887766542 479
Q ss_pred eEEeccCCCC---CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh
Q 017495 253 EHVGGDMFEN---VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML 328 (370)
Q Consensus 253 ~~~~~D~~~~---~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 328 (370)
+++.+|+++. .+.. |+|++.++||+|+++++..+|++++++|+|||+|+|.|.+.++....+ .....+++.|+
T Consensus 232 ~~~~~d~~~~~~~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~---~~~~~~~~~~~ 308 (352)
T 3mcz_A 232 EFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTP---ALSADFSLHMM 308 (352)
T ss_dssp EEEECCTTCGGGGTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSS---HHHHHHHHHHH
T ss_pred EEEeCCcccCcccCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCC---chHHHhhHHHH
Confidence 9999999984 5555 999999999999999999999999999999999999999887653322 34556788887
Q ss_pred hhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 329 AQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 329 ~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
....++..++.++|.++|+++||++++.. .+..++++++|
T Consensus 309 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~--~g~~~l~~a~k 348 (352)
T 3mcz_A 309 VNTNHGELHPTPWIAGVVRDAGLAVGERS--IGRYTLLIGQR 348 (352)
T ss_dssp HHSTTCCCCCHHHHHHHHHHTTCEEEEEE--ETTEEEEEEEC
T ss_pred hhCCCCCcCCHHHHHHHHHHCCCceeeec--cCceEEEEEec
Confidence 65557889999999999999999999843 35678888876
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=168.53 Aligned_cols=164 Identities=15% Similarity=0.162 Sum_probs=120.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~ 273 (370)
.++..+|||||||+|..+..+++.+ |+++++++|+ +.+++.++++ .+|+++++|+.+ +.+..|+|++.+
T Consensus 68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~ 147 (261)
T 4gek_A 68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF 147 (261)
T ss_dssp CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence 4678899999999999999999985 6789999998 9998877642 579999999988 665569999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhh-hhhhHHhh-hc------------CCCcccCH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVF-EQDLFMLA-QT------------TGGRERSK 339 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~-~~d~~~~~-~~------------~~~~~~t~ 339 (370)
+||++++++...+|++++++|||||+|++.|.....++... ..... ..++.... .. .--...+.
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~--~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~ 225 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVG--ELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV 225 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHH--HHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCH
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHH--HHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCH
Confidence 99999998888999999999999999999999876542110 00000 00000000 00 00123588
Q ss_pred HHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 340 KEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++.++|++|||+.++++.--.....+.+.|
T Consensus 226 ~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K 256 (261)
T 4gek_A 226 ETHKARLHKAGFEHSELWFQCFNFGSLVALK 256 (261)
T ss_dssp HHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHcCCCeEEEEEEeccEEEEEEEE
Confidence 9999999999999998754323333344554
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=158.93 Aligned_cols=174 Identities=16% Similarity=0.167 Sum_probs=127.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCC-CE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~-D~ 268 (370)
..++..+....+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34444444344678999999999999999999999999999998 888776654 2479999999988 55544 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-----------H-hhhcCCCcc
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-----------M-LAQTTGGRE 336 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-----------~-~~~~~~~~~ 336 (370)
|++..++|++++++...+|++++++|+|||++++.+...++...... .....+.... . .........
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN-LNKTIWRQYVENSGLTEEEIAAGYERSKLDKD 191 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHH-HHHHHHHHHHHTSSCCHHHHHTTC----CCCC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhh-HHHHHHHHHHHhcCCCHHHHHHHHHhcccccc
Confidence 99999999999888788999999999999999999987755311000 0000000000 0 000012345
Q ss_pred cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++.++|.++|++|||+.+++.....+.+++..+|
T Consensus 192 ~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~ 225 (234)
T 3dtn_A 192 IEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRK 225 (234)
T ss_dssp CBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEEC
T ss_pred cCHHHHHHHHHHcCCCceeeeeeecceeEEEEEe
Confidence 6889999999999999999888777777665543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.5e-19 Score=155.18 Aligned_cols=169 Identities=15% Similarity=0.239 Sum_probs=120.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..++ .++. +|||||||+|.++..+++. ++.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 344555554 4444 9999999999999999998 8889999998 8888776643 479999999988 6665
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh-hhHHhhhcCCCcccCHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ-DLFMLAQTTGGRERSKKEY 342 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~t~~e~ 342 (370)
. |+|++..++||+++. ..+|++++++|+|||++++.+...+............... .+..... .+...++.++|
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 186 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNR-KNISQENVERF 186 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHH-HHSSHHHHHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhh-hccccCCHHHH
Confidence 4 999999999999654 6899999999999999999876543310000000000000 0000000 12334578999
Q ss_pred HHHHHhCCCCcceEEecCCCeeEEEEe
Q 017495 343 EALAKNSGFSGLEIVCCAYNSWVMEFH 369 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~~~~~~~~~e~~ 369 (370)
.++|+++||+++++.....+.+++..+
T Consensus 187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k 213 (219)
T 3dlc_A 187 QNVLDEIGISSYEIILGDEGFWIIISK 213 (219)
T ss_dssp HHHHHHHTCSSEEEEEETTEEEEEEBC
T ss_pred HHHHHHcCCCeEEEEecCCceEEEEec
Confidence 999999999999999887777765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=147.25 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=125.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
..++..+. ..+..+|||||||+|.++..+++.+ |..+++++|. +.+++.+++. .+++++.+|+.+ +.+..
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34555555 6778899999999999999999997 8889999998 8888777643 479999999987 55554
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++|++++. ..+|++++++|+|||++++.++......... .....++.++|.+
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~~~ 166 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDKGP-----------------PPEEVYSEWEVGL 166 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSC-----------------CGGGSCCHHHHHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEecccccccCC-----------------chhcccCHHHHHH
Confidence 999999999999765 6899999999999999999998765431111 0122357899999
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+++++||+++++.........+.++|
T Consensus 167 ~l~~~Gf~~~~~~~~~~~~~~~~~~k 192 (219)
T 3dh0_A 167 ILEDAGIRVGRVVEVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHTTCEEEEEEEETTTEEEEEEEC
T ss_pred HHHHCCCEEEEEEeeCCceEEEEEEe
Confidence 99999999999988887777777665
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=144.98 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=120.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC-CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG-DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~-D~i~~ 271 (370)
.++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 446789999999999999999986 679999998 8888776643 479999999988 55543 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHh------h-hcCCCcccCHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFML------A-QTTGGRERSKKEYEA 344 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~------~-~~~~~~~~t~~e~~~ 344 (370)
.+++|++++++...+|++++++|+|||++++.++..+... ........... . .......++.++|.+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD------AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQT 186 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHH------HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChH------HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHH
Confidence 9999999998877799999999999999999987654321 00000000000 0 000112348899999
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
+|+++||+++.... ....+++.+.|
T Consensus 187 ~l~~aGf~v~~~~~-~~~~w~~~~~~ 211 (220)
T 3hnr_A 187 IFENNGFHVTFTRL-NHFVWVMEATK 211 (220)
T ss_dssp HHHHTTEEEEEEEC-SSSEEEEEEEE
T ss_pred HHHHCCCEEEEeec-cceEEEEeehh
Confidence 99999998665544 47888887654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=149.96 Aligned_cols=156 Identities=17% Similarity=0.231 Sum_probs=121.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~-- 266 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345555555 6678899999999999999999987 779999998 8888776543 589999999988 66544
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++..++||+++++...+|++++++|+|||++++.++..+..... ...+..... ..+...++.++|.+++
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~~~~l 193 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENW------DDEFKEYVK--QRKYTLITVEEYADIL 193 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGC------CHHHHHHHH--HHTCCCCCHHHHHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccc------hHHHHHHHh--cCCCCCCCHHHHHHHH
Confidence 99999999999987888999999999999999999999876541110 001111111 1244567899999999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||+++++....
T Consensus 194 ~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 194 TACNFKNVVSKDLS 207 (266)
T ss_dssp HHTTCEEEEEEECH
T ss_pred HHcCCeEEEEEeCC
Confidence 99999999887653
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=143.85 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=113.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCCCCCCC--CEEE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFENVPRG--DAIF 270 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~~~p~~--D~i~ 270 (370)
..++..+....+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+..+.. |+|+
T Consensus 35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~ 112 (218)
T 3ou2_A 35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF 112 (218)
T ss_dssp HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence 345555544556789999999999999999998 569999998 8888877653 57999999998854433 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC------CcccCHHHHHH
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG------GRERSKKEYEA 344 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ 344 (370)
+.+++||+++++...+|++++++|+|||++++.+...+.......... ............+ ....+.++|.+
T Consensus 113 ~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (218)
T 3ou2_A 113 FAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDS--EPEVAVRRTLQDGRSFRIVKVFRSPAELTE 190 (218)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC--------------CEEEEECTTSCEEEEECCCCCHHHHHH
T ss_pred EechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhc--ccccceeeecCCcchhhHhhcCCCHHHHHH
Confidence 999999999988889999999999999999999987643211100000 0000000000001 12358999999
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
+|+++||++......
T Consensus 191 ~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 191 RLTALGWSCSVDEVH 205 (218)
T ss_dssp HHHHTTEEEEEEEEE
T ss_pred HHHHCCCEEEeeecc
Confidence 999999995544443
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-17 Score=144.58 Aligned_cols=152 Identities=16% Similarity=0.290 Sum_probs=116.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--D 267 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D 267 (370)
....+...++.+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++.+|+.+ +++.+ |
T Consensus 28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD 103 (240)
T 3dli_A 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLD 103 (240)
T ss_dssp HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBS
T ss_pred HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCee
Confidence 33444444444567789999999999999999987 557899998 8888887764 8999999876 45543 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++||+++++...+|++++++|||||++++..+.... ........ ....+...++.++|.++++
T Consensus 104 ~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---------~~~~~~~~--~~~~~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 104 GVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS---------LYSLINFY--IDPTHKKPVHPETLKFILE 172 (240)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS---------HHHHHHHT--TSTTCCSCCCHHHHHHHHH
T ss_pred EEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch---------hHHHHHHh--cCccccccCCHHHHHHHHH
Confidence 999999999999888889999999999999999998765322 11111111 1112345678999999999
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
++||+++++....
T Consensus 173 ~aGf~~~~~~~~~ 185 (240)
T 3dli_A 173 YLGFRDVKIEFFE 185 (240)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HCCCeEEEEEEec
Confidence 9999999877654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=150.07 Aligned_cols=154 Identities=19% Similarity=0.313 Sum_probs=117.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
+..++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +++.+
T Consensus 26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~ 102 (260)
T 1vl5_A 26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDE 102 (260)
T ss_dssp HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTT
T ss_pred HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCC
Confidence 455666665 66788999999999999999999875 8999998 8888776542 579999999988 66643
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH-hhhcCCCcccCHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM-LAQTTGGRERSKKEYE 343 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~ 343 (370)
|+|++..++||+++. ..+|++++++|+|||+|++.+...+..+ ....++.... +....+...++.++|.
T Consensus 103 ~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (260)
T 1vl5_A 103 RFHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWL 174 (260)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred CEEEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH------HHHHHHHHHHHhcCccccCCCCHHHHH
Confidence 999999999999876 5899999999999999999988765421 1111111111 1111134567899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
++|+++||+++.+...
T Consensus 175 ~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 175 KMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHTCEEEEEEEE
T ss_pred HHHHHCCCeEEEEEEe
Confidence 9999999998877654
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-18 Score=149.65 Aligned_cols=161 Identities=14% Similarity=0.118 Sum_probs=115.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCC-C-CEEEeccccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPR-G-DAIFLKWMLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~-~-D~i~~~~vLh 276 (370)
++..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +.+. . |+|++..++|
T Consensus 37 ~~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~ 114 (227)
T 1ve3_A 37 KKRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIV 114 (227)
T ss_dssp CSCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence 3478999999999999999999877 8999998 8888776542 679999999988 5554 3 9999999987
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC--------------------Ccc
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG--------------------GRE 336 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------------------~~~ 336 (370)
++..++...+|++++++|+|||++++.++..+...... ..........++....+. ...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 1ve3_A 115 HFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRL-KESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNV 193 (227)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGC-CC---------CCEEEEETTTTEEEEEC-----CCEEEEEC
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHH-HhhhhcccceeecccccCccccEEEEEeccchhhheeehhh
Confidence 77777888999999999999999999887532110000 000000000000000000 111
Q ss_pred cCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++ .+|.++|+++||+.+++..++...++++.+|
T Consensus 194 w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~ 226 (227)
T 1ve3_A 194 WG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNP 226 (227)
T ss_dssp CC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred hc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence 12 4899999999999999999877778888874
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=148.29 Aligned_cols=163 Identities=15% Similarity=0.115 Sum_probs=117.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEecc-cccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLKW-MLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh~~~d 280 (370)
++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +|||+++
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~ 126 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAG 126 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCH
T ss_pred CCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCC
Confidence 456899999999999999999874 47999998 8888877653 589999999988 55444 9999998 9999865
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch---------h-----------hhhhhhHHhhhcCC------
Q 017495 281 -EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH---------I-----------VFEQDLFMLAQTTG------ 333 (370)
Q Consensus 281 -~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~---------~-----------~~~~d~~~~~~~~~------ 333 (370)
++...+|++++++|+|||+|++.+...++......... . ...+++.+.....+
T Consensus 127 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (263)
T 3pfg_A 127 QAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHH 206 (263)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEE
Confidence 46779999999999999999997654443211100000 0 00001111100001
Q ss_pred -----CcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 334 -----GRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 334 -----~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
...++.++|.++|+++||+++++........++.++|
T Consensus 207 ~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K 248 (263)
T 3pfg_A 207 EESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLP 248 (263)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEec
Confidence 2345899999999999999999877766667777765
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.9e-17 Score=145.99 Aligned_cols=162 Identities=15% Similarity=0.140 Sum_probs=120.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+ .|..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 345666665 66788999999999999999997765 49999998 8887766542 479999999865 3343
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCC-----CCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPE-----NQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
|+|++..+|||+++++...+|++++++|||||++++.+...+.... .+.........+.......+++..++.+
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 209 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIP 209 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHH
Confidence 9999999999997767789999999999999999999987654210 0000000011111111123467778999
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
+|.++++++||+++++...
T Consensus 210 ~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 210 MVQECASANGFTVTRVQSL 228 (287)
T ss_dssp HHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhCCcEEEEEEeC
Confidence 9999999999999988765
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.2e-17 Score=145.37 Aligned_cols=157 Identities=17% Similarity=0.153 Sum_probs=120.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..++ ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 455666665 6778899999999999999999987 689999998 8877766532 479999999988 6665
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 343 (370)
+ |+|++..++||+++. ..+|++++++|+|||++++.+......... ......+...... .+...++.++|.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~ 200 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVEG----AKKEAVDAFRAGG-GVLSLGGIDEYE 200 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCCH----HHHHHHHHHHHHH-TCCCCCCHHHHH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCCh----hHHHHHHHHHhhc-CccCCCCHHHHH
Confidence 3 999999999999865 689999999999999999999876542111 1111112111111 356678999999
Q ss_pred HHHHhCCCCcceEEecC
Q 017495 344 ALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~~ 360 (370)
++++++||+++++...+
T Consensus 201 ~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 201 SDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHTTCEEEEEEECH
T ss_pred HHHHHcCCeEEEEEECc
Confidence 99999999999887653
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=146.44 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=117.9
Q ss_pred HHHHHHhh---cCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C
Q 017495 195 MNKILDVY---RGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N 262 (370)
Q Consensus 195 ~~~l~~~~---~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~ 262 (370)
...++..+ .+..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +
T Consensus 67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~ 145 (297)
T 2o57_A 67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS
T ss_pred HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC
Confidence 44555556 136778899999999999999999986 469999998 8887766542 579999999988 6
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++.+ |+|++..++||+++ ...+|++++++|||||+|++.++...+..... . ...+.... . .....+.+
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~~~-~-~~~~~~~~ 215 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPD--KLKVFQECARVLKPRGVMAITDPMKEDGIDKS---S---IQPILDRI-K-LHDMGSLG 215 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSC--HHHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---G---GHHHHHHH-T-CSSCCCHH
T ss_pred CCCCCEeEEEecchhhhcCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCchH---H---HHHHHHHh-c-CCCCCCHH
Confidence 6654 99999999999987 47999999999999999999998765432111 0 11111111 1 23356899
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
+|.++|+++||+++++...
T Consensus 216 ~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 216 LYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp HHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHCCCeEEEEEEC
Confidence 9999999999999988765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=147.30 Aligned_cols=149 Identities=21% Similarity=0.263 Sum_probs=116.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D 267 (370)
..++..+. ..+..+|||||||+|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T 1xtp_A 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeE
Confidence 45555554 5577899999999999999999876 557999998 8887776543 579999999987 55543 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++.++|||+++++...+|++++++|+|||++++.+........ ..+. ......++.++|.++|+
T Consensus 161 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~-----~~~~~~~~~~~~~~~l~ 226 (254)
T 1xtp_A 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc-----cCCcccCCHHHHHHHHH
Confidence 999999999999888899999999999999999999975543210 0110 11233578999999999
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
++||+++++....
T Consensus 227 ~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 227 ESGVRVVKEAFQE 239 (254)
T ss_dssp HHTCCEEEEEECT
T ss_pred HCCCEEEEeeecC
Confidence 9999999887653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=141.82 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=116.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+ +++.+
T Consensus 10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 86 (239)
T 1xxl_A 10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD 86 (239)
T ss_dssp HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCC
Confidence 345555565 77889999999999999999998865 8999998 8888776542 579999999987 55543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-HhhhcCCCcccCHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-MLAQTTGGRERSKKEYE 343 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~t~~e~~ 343 (370)
|+|++.+++||+++. ..+|++++++|+|||++++.+...+.. . ....+.... ......+...++.++|.
T Consensus 87 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (239)
T 1xxl_A 87 SFDIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPED---P---VLDEFVNHLNRLRDPSHVRESSLSEWQ 158 (239)
T ss_dssp CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSS---H---HHHHHHHHHHHHHCTTCCCCCBHHHHH
T ss_pred cEEEEEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCC---h---hHHHHHHHHHHhccccccCCCCHHHHH
Confidence 999999999999865 689999999999999999999876542 1 111111111 11111234567899999
Q ss_pred HHHHhCCCCcceEEec
Q 017495 344 ALAKNSGFSGLEIVCC 359 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~~ 359 (370)
++|+++||+++.+...
T Consensus 159 ~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 159 AMFSANQLAYQDIQKW 174 (239)
T ss_dssp HHHHHTTEEEEEEEEE
T ss_pred HHHHHCCCcEEEEEee
Confidence 9999999998877654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-16 Score=145.27 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=122.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
+..++..+. ..+..+|||||||+|.++..+++.++ .+++++|+ +.+++.+++. ++++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445666665 67788999999999999999999877 89999998 8888777642 3799999998765 444
Q ss_pred -CEEEecccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCc-----cchhhhhhhhHHhhhcCC
Q 017495 267 -DAIFLKWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQA-----SSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 267 -D~i~~~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~ 333 (370)
|+|++..++||+++ ++...+|++++++|||||++++.+...++...... ........++......++
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 217 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPG 217 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCC
Confidence 99999999999954 56779999999999999999999987764210000 000000012222222356
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+..++.+++.++++++||+++++...+
T Consensus 218 ~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 218 GRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 778899999999999999999887754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-16 Score=145.10 Aligned_cols=162 Identities=14% Similarity=0.044 Sum_probs=121.9
Q ss_pred HHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEecc
Q 017495 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGD 258 (370)
Q Consensus 187 m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D 258 (370)
+..........+++.+..+.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|
T Consensus 97 ~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 175 (312)
T 3vc1_A 97 LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCN 175 (312)
T ss_dssp HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECC
Confidence 4444444455566665545677899999999999999999986 678999998 8888776642 479999999
Q ss_pred CCC-CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCc
Q 017495 259 MFE-NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGR 335 (370)
Q Consensus 259 ~~~-~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 335 (370)
+.+ +++.+ |+|++..++|+++ ...+|++++++|||||++++.+....+...... .......... ...
T Consensus 176 ~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~ 245 (312)
T 3vc1_A 176 MLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPS-----KWVSQINAHF--ECN 245 (312)
T ss_dssp TTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCC-----HHHHHHHHHH--TCC
T ss_pred hhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccchh-----HHHHHHHhhh--cCC
Confidence 988 66543 9999999999984 579999999999999999999987765321110 1111111111 123
Q ss_pred ccCHHHHHHHHHhCCCCcceEEec
Q 017495 336 ERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 336 ~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.++.++|.++|+++||+++++...
T Consensus 246 ~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 246 IHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp CCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred CCCHHHHHHHHHHCCCEEEEEEeC
Confidence 678999999999999999988775
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-17 Score=141.17 Aligned_cols=144 Identities=14% Similarity=0.117 Sum_probs=114.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+.+ |+|++.+++||++.++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 679999999999999999987 568999998 888887765 3689999999987 55543 9999999999998777
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-C
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-Y 361 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~ 361 (370)
...+|++++++|+|||++++.++..+... .+.. . ......++.++|.++|+++||+++++...+ .
T Consensus 120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~------~~~~-------~-~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~ 185 (203)
T 3h2b_A 120 LPDALVALRMAVEDGGGLLMSFFSGPSLE------PMYH-------P-VATAYRWPLPELAQALETAGFQVTSSHWDPRF 185 (203)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEEECCSSCE------EECC-------S-SSCEEECCHHHHHHHHHHTTEEEEEEEECTTS
T ss_pred HHHHHHHHHHHcCCCcEEEEEEccCCchh------hhhc-------h-hhhhccCCHHHHHHHHHHCCCcEEEEEecCCC
Confidence 88999999999999999999887654310 0000 0 012345689999999999999999988764 4
Q ss_pred CeeEEE
Q 017495 362 NSWVME 367 (370)
Q Consensus 362 ~~~~~e 367 (370)
++..+.
T Consensus 186 p~~~l~ 191 (203)
T 3h2b_A 186 PHAYLT 191 (203)
T ss_dssp SEEEEE
T ss_pred cchhhh
Confidence 444443
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-16 Score=139.31 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=115.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
...+...++ ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.++...+++++.+|+.+ +++.+ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345555555 66789999999999999999998 7889999999 9999988877799999999987 66543 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
+.+++||+++. ..+|++++++|| ||++++.+...+..... +....+... ... .+...++.+++. +|+++|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~----~~~~~~~~~-~~~-~~~~~~~~~~~~-~l~~aG 169 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQRI----WLYDYFPFL-WED-ALRFLPLDEQIN-LLQENT 169 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCCC----GGGGTCHHH-HHH-HHTSCCHHHHHH-HHHHHH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHHH----HHHHHHHHH-hhh-hhhhCCCHHHHH-HHHHcC
Confidence 99999999754 689999999999 99999998854332110 111111110 111 123345678899 999999
Q ss_pred CCcceEEec
Q 017495 351 FSGLEIVCC 359 (370)
Q Consensus 351 f~~v~~~~~ 359 (370)
|+.+++...
T Consensus 170 F~~v~~~~~ 178 (261)
T 3ege_A 170 KRRVEAIPF 178 (261)
T ss_dssp CSEEEEEEC
T ss_pred CCceeEEEe
Confidence 999987765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-16 Score=142.30 Aligned_cols=153 Identities=15% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345555565 6778899999999999999999987 678999998 8888776542 479999999987 4433
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++..++|++++. ..+|++++++|||||+|++.++.....+... . ...... .......++.++|.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~---~---~~~~~~--~~~~~~~~~~~~~~~ 172 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---E---IAQACG--VSSTSDFLTLPGLVG 172 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---H---HHHTTT--CSCGGGSCCHHHHHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCChH---H---HHHHHh--cccccccCCHHHHHH
Confidence 3 999999999998854 6899999999999999999998664432111 0 000000 011224568999999
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
+|+++||+++++...
T Consensus 173 ~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 173 AFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHCCCeeEEEEeC
Confidence 999999999887654
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-16 Score=147.29 Aligned_cols=165 Identities=17% Similarity=0.150 Sum_probs=118.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMIT-SRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~ 273 (370)
..+..+|||||||+|.++..++ ...|+.+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 5678899999999999999986 5689999999998 8888776542 359999999988 55544 9999999
Q ss_pred cccCCChhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh--------hhhhhHHhhhcCC--CcccCHHHH
Q 017495 274 MLHGWTDEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV--------FEQDLFMLAQTTG--GRERSKKEY 342 (370)
Q Consensus 274 vLh~~~d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~--------~~~d~~~~~~~~~--~~~~t~~e~ 342 (370)
++||++++. ...+|++++++|+|||+|++.+...+....... .+.. ......+...... ...++.+++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDS-PWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQT 274 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTC-CCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccc-cceeeccccchhhhhhhHHHHHHhhhhhccCCHHHH
Confidence 999996554 457999999999999999998876654322111 0000 0000001111001 134799999
Q ss_pred HHHHHhCCCCcceEEecCC-CeeEEEEeC
Q 017495 343 EALAKNSGFSGLEIVCCAY-NSWVMEFHK 370 (370)
Q Consensus 343 ~~ll~~aGf~~v~~~~~~~-~~~~~e~~k 370 (370)
.++|+++||+++++..... ....+.++|
T Consensus 275 ~~~l~~aGF~~v~~~~~~~~~~~~v~a~K 303 (305)
T 3ocj_A 275 RAQLEEAGFTDLRFEDDRARLFPTVIARK 303 (305)
T ss_dssp HHHHHHTTCEEEEEECCTTSSSCEEEEEC
T ss_pred HHHHHHCCCEEEEEEcccCceeeEEEEec
Confidence 9999999999999887543 333555554
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=141.24 Aligned_cols=163 Identities=18% Similarity=0.136 Sum_probs=116.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEe-cccccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFL-KWMLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~-~~vLh~~~d 280 (370)
.+..+|||||||+|.++..+++.++ +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 4668999999999999999999876 8999998 8888877653 579999999987 44444 99995 559999854
Q ss_pred -hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch--------------------hhhhhhhHHhhhcCCC-----
Q 017495 281 -EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH--------------------IVFEQDLFMLAQTTGG----- 334 (370)
Q Consensus 281 -~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~~----- 334 (370)
++...+|++++++|+|||++++.++..++......... ......+.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHF 196 (239)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEE
Confidence 56789999999999999999998766544321100000 0000001111000011
Q ss_pred ------cccCHHHHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 335 ------RERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 335 ------~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
..++.++|.++|+++||+++.+....+...+++++|
T Consensus 197 ~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K 238 (239)
T 3bxo_A 197 SDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVP 238 (239)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEE
T ss_pred EEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEec
Confidence 346899999999999998777666556777888876
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=143.42 Aligned_cols=162 Identities=18% Similarity=0.214 Sum_probs=120.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++. ++++++.+|+.+. |..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-AEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-CCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-CCC
Confidence 445666665 6678899999999999999999986 569999998 8888776542 4699999998652 343
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc-h----hhhhhhhHHhhhcCCCcccCHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASS-H----IVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~-~----~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
|+|++..++||+++++...+|++++++|+|||++++.++..+......... . .....+.......+++..++.+
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 235 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE 235 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence 999999999999877788999999999999999999998775421000000 0 0001111111112466778999
Q ss_pred HHHHHHHhCCCCcceEEec
Q 017495 341 EYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~ 359 (370)
++.++++++||+++++...
T Consensus 236 ~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 236 MMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp HHHHHHHHTTCBCCCCEEC
T ss_pred HHHHHHHhCCCEEEEEEec
Confidence 9999999999999987764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.68 E-value=9e-17 Score=145.38 Aligned_cols=153 Identities=17% Similarity=0.242 Sum_probs=114.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
+.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56788999999999999999999999999999998 8888776542 579999999987 55543 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh-HHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL-FMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+|++++. ..+|++++++|+|||++++.+.........+........+.. .......++..++..+|.++|+++||++
T Consensus 115 l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 192 (276)
T 3mgg_A 115 LEHLQSP--EEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192 (276)
T ss_dssp GGGCSCH--HHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEE
T ss_pred hhhcCCH--HHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCe
Confidence 9999876 489999999999999999988643221000000011111111 1111112455667889999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 193 v~~~~~ 198 (276)
T 3mgg_A 193 IRVEPR 198 (276)
T ss_dssp EEEEEE
T ss_pred EEEeeE
Confidence 987754
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-16 Score=141.51 Aligned_cols=152 Identities=13% Similarity=0.092 Sum_probs=115.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
..++..+.+.++..+|||||||+|.++..+++.++. +++++|+ +.+++.+++. ++++++.+|+.+ +.+..
T Consensus 35 ~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 113 (257)
T 3f4k_A 35 RKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE 113 (257)
T ss_dssp HHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred HHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence 345555544667789999999999999999999886 9999998 8888776542 469999999977 55543
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++||++ ...+|++++++|+|||++++.+......... ......+... .....+.++|.+
T Consensus 114 ~fD~v~~~~~l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~ 181 (257)
T 3f4k_A 114 ELDLIWSEGAIYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERP------AEIEDFWMDA---YPEISVIPTCID 181 (257)
T ss_dssp CEEEEEEESCSCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCC------HHHHHHHHHH---CTTCCBHHHHHH
T ss_pred CEEEEEecChHhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCh------HHHHHHHHHh---CCCCCCHHHHHH
Confidence 9999999999983 3589999999999999999999764332111 1111222111 233568999999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+|+++||+++.+...+
T Consensus 182 ~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 182 KMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHTTEEEEEEEECC
T ss_pred HHHHCCCeEEEEEECC
Confidence 9999999999987765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=138.10 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=109.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC-CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~ 281 (370)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.. +.+.. |+|++..+|||++++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~ 118 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRD 118 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHH
Confidence 456789999999999999999986 568999998 8888877765578899999887 52233 999999999999988
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC-CCcceEEec
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG-FSGLEIVCC 359 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~ 359 (370)
+...+|++++++|+|||++++........... .. ......++.++|.++|+++| |+++++...
T Consensus 119 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~--------~~-------~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 119 ELADVLKLIWRALKPGGLFYASYKSGEGEGRD--------KL-------ARYYNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEECCSSCEEC--------TT-------SCEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEcCCCccccc--------cc-------chhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 88999999999999999999986544321000 00 01122468999999999999 999988765
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.3e-16 Score=136.44 Aligned_cols=143 Identities=17% Similarity=0.178 Sum_probs=110.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
.++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.+++||
T Consensus 51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 128 (242)
T 3l8d_A 51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEW 128 (242)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTS
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhh
Confidence 346789999999999999999997 568999998 8888877654 679999999988 65543 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++. ..+|++++++|+|||++++.+......... ..+..... .......++.+++.++++++||++++..
T Consensus 129 ~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 129 TEEP--LRALNEIKRVLKSDGYACIAILGPTAKPRE-------NSYPRLYG-KDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSCH--HHHHHHHHHHEEEEEEEEEEEECTTCGGGG-------GGGGGGGT-CCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred ccCH--HHHHHHHHHHhCCCeEEEEEEcCCcchhhh-------hhhhhhcc-ccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 9765 588999999999999999998654332110 01111110 1113345789999999999999999877
Q ss_pred ec
Q 017495 358 CC 359 (370)
Q Consensus 358 ~~ 359 (370)
..
T Consensus 199 ~~ 200 (242)
T 3l8d_A 199 GV 200 (242)
T ss_dssp EE
T ss_pred cc
Confidence 54
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.3e-17 Score=134.43 Aligned_cols=146 Identities=17% Similarity=0.168 Sum_probs=115.3
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCCCCCCC--CEEEecc
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFENVPRG--DAIFLKW 273 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~~~p~~--D~i~~~~ 273 (370)
+++.++ ..+..+|||||||+|.++..+++.+. +++++|. +.+++.+++ .+++++..+| .+.+.. |+|++..
T Consensus 9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~ 83 (170)
T 3i9f_A 9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFAN 83 (170)
T ss_dssp THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEES
T ss_pred HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEcc
Confidence 344444 66778999999999999999999873 8999998 888877765 4689999999 444443 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
++|++++. ..+|++++++|+|||++++.++........+ .....++.++|.++|+ ||++
T Consensus 84 ~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~--Gf~~ 142 (170)
T 3i9f_A 84 SFHDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGIGP-----------------PLSIRMDEKDYMGWFS--NFVV 142 (170)
T ss_dssp CSTTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSSSS-----------------CGGGCCCHHHHHHHTT--TEEE
T ss_pred chhcccCH--HHHHHHHHHhcCCCCEEEEEEcCccccccCc-----------------hHhhhcCHHHHHHHHh--CcEE
Confidence 99999754 6899999999999999999998765432111 0112358999999999 9999
Q ss_pred ceEEecCCCeeEEEEe
Q 017495 354 LEIVCCAYNSWVMEFH 369 (370)
Q Consensus 354 v~~~~~~~~~~~~e~~ 369 (370)
+++.........+.+.
T Consensus 143 ~~~~~~~~~~~~l~~~ 158 (170)
T 3i9f_A 143 EKRFNPTPYHFGLVLK 158 (170)
T ss_dssp EEEECSSTTEEEEEEE
T ss_pred EEccCCCCceEEEEEe
Confidence 9999988777666654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=142.41 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=116.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~- 266 (370)
.++..+....+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+ +.+.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443567889999999999999999998 8889999998 8888776542 569999999987 55543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++..++|+++ ...+|++++++|+|||++++.+......... ......+.- ......+.+++.++
T Consensus 115 fD~i~~~~~~~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~ 182 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG---FERGLNEWRKYLKKGGYLAVSECSWFTDERP------AEINDFWMD---AYPEIDTIPNQVAK 182 (267)
T ss_dssp EEEEEESSCGGGTC---HHHHHHHHGGGEEEEEEEEEEEEEESSSCCC------HHHHHHHHH---HCTTCEEHHHHHHH
T ss_pred EEEEEEcCCceecC---HHHHHHHHHHHcCCCCEEEEEEeeecCCCCh------HHHHHHHHH---hCCCCCCHHHHHHH
Confidence 9999999999983 3688999999999999999999865432111 111122111 12345689999999
Q ss_pred HHhCCCCcceEEecC
Q 017495 346 AKNSGFSGLEIVCCA 360 (370)
Q Consensus 346 l~~aGf~~v~~~~~~ 360 (370)
++++||+++++...+
T Consensus 183 l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 183 IHKAGYLPVATFILP 197 (267)
T ss_dssp HHHTTEEEEEEEECC
T ss_pred HHHCCCEEEEEEECC
Confidence 999999999988765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=139.34 Aligned_cols=149 Identities=17% Similarity=0.123 Sum_probs=107.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCCCCCC-C-CEEEecccccCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFENVPR-G-DAIFLKWMLHGWT 279 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~~~ 279 (370)
..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++.++|||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~ 117 (250)
T 2p7i_A 40 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 117 (250)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hcCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhc
Confidence 34567999999999999999998766 6889998 8887776643 2799999999875343 3 9999999999998
Q ss_pred hhHHHHHHHHHH-HhCCCCcEEEEEeecCCCCCCC-----CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 280 DEHCLKLLKNCW-EALPENGKVIIVESILPLVPEN-----QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 280 d~~~~~iL~~~~-~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+. ..+|++++ ++|+|||+|++.++........ ............. .. ..+...++.++|.++|+++||++
T Consensus 118 ~~--~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~~Gf~~ 193 (250)
T 2p7i_A 118 DP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAE-FA-HGHRCTYALDTLERDASRAGLQV 193 (250)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHH-HH-TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhccccc-cc-ccccccCCHHHHHHHHHHCCCeE
Confidence 76 68999999 9999999999988654321000 0000000000000 01 12345679999999999999999
Q ss_pred ceEEec
Q 017495 354 LEIVCC 359 (370)
Q Consensus 354 v~~~~~ 359 (370)
+++...
T Consensus 194 ~~~~~~ 199 (250)
T 2p7i_A 194 TYRSGI 199 (250)
T ss_dssp EEEEEE
T ss_pred EEEeee
Confidence 987654
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=144.02 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=119.0
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCC-
Q 017495 193 LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFE- 261 (370)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~- 261 (370)
.....++..+. . ...+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-P-VSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34455666554 3 3449999999999999999987 578999998 8888877642 579999999998
Q ss_pred CCCCC-CEEEe-cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc--chhh--------hh-------
Q 017495 262 NVPRG-DAIFL-KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS--SHIV--------FE------- 322 (370)
Q Consensus 262 ~~p~~-D~i~~-~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~--~~~~--------~~------- 322 (370)
+.+.. |+|++ ..++|++++++...+|++++++|+|||+|++..+..+........ ..+. ..
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 225 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAE 225 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccc
Confidence 55444 98886 577888887788999999999999999999987755321000000 0000 00
Q ss_pred --hhhHHhh----------hcCCCcccCHHHHHHHHHhCCCCcceEEecCC------CeeEEEEe
Q 017495 323 --QDLFMLA----------QTTGGRERSKKEYEALAKNSGFSGLEIVCCAY------NSWVMEFH 369 (370)
Q Consensus 323 --~d~~~~~----------~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~------~~~~~e~~ 369 (370)
..+.... .......++.++|.++|+++||+++++.+... ...++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~ 290 (299)
T 3g2m_A 226 EIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAV 290 (299)
T ss_dssp EEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEE
T ss_pred cEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehh
Confidence 0000000 00011245999999999999999999988752 23566654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=141.97 Aligned_cols=138 Identities=19% Similarity=0.244 Sum_probs=111.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~vLh 276 (370)
+..+|||||||+|.++..+++.+ ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 57899999999999999998876 568999998 8888776542 258899999876 44443 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
|+++++...+|++++++|+|||+|++.++..+.. . .++. ..+...++.++|.++|+++||+++++
T Consensus 158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~---~-------~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~ 222 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG---V-------ILDD-----VDSSVCRDLDVVRRIICSAGLSLLAE 222 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS---E-------EEET-----TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc---c-------eecc-----cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence 9998888899999999999999999999876541 0 0110 11233468999999999999999998
Q ss_pred EecC
Q 017495 357 VCCA 360 (370)
Q Consensus 357 ~~~~ 360 (370)
....
T Consensus 223 ~~~~ 226 (241)
T 2ex4_A 223 ERQE 226 (241)
T ss_dssp EECC
T ss_pred eecC
Confidence 7653
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=138.12 Aligned_cols=140 Identities=20% Similarity=0.223 Sum_probs=109.1
Q ss_pred CCCeEEEEcCcc---cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCC------------CC--
Q 017495 207 GLKVLVDVGGGI---GVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFEN------------VP-- 264 (370)
Q Consensus 207 ~~~~vLDvG~G~---G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~------------~p-- 264 (370)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.+++.+++ .++++++.+|+.++ ++
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 457999999999 999888888899999999999 999887764 26899999999762 12
Q ss_pred CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 265 RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 265 ~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
..|+|++..+|||+++++...+|++++++|+|||+|++.+...+. .. ......+...... .....++.+++.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~---~~---~~~~~~~~~~~~~-~~~~~~s~~ei~~ 229 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG---LP---AQQKLARITRENL-GEGWARTPEEIER 229 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS---CH---HHHHHHHHHHHHH-SCCCCBCHHHHHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc---hH---HHHHHHHHHHhcC-CCCccCCHHHHHH
Confidence 239999999999999877889999999999999999999987532 11 1111222222211 2456789999999
Q ss_pred HHHhCCCCcce
Q 017495 345 LAKNSGFSGLE 355 (370)
Q Consensus 345 ll~~aGf~~v~ 355 (370)
+| +||++++
T Consensus 230 ~l--~G~~l~~ 238 (274)
T 2qe6_A 230 QF--GDFELVE 238 (274)
T ss_dssp TT--TTCEECT
T ss_pred Hh--CCCeEcc
Confidence 99 5998775
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=136.21 Aligned_cols=141 Identities=7% Similarity=0.021 Sum_probs=107.2
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------------CCCeEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------------PGVEHVGG 257 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------------~rv~~~~~ 257 (370)
.++..+. ..+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++. .+++++++
T Consensus 13 ~~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 13 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 3444444 567789999999999999999987 569999998 8888876532 47999999
Q ss_pred cCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 258 DMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 258 D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
|+.+ +.+ .. |+|++..++|++++++...++++++++|||||+++++....+.... ...
T Consensus 90 d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~------------------~~~ 151 (203)
T 1pjz_A 90 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALL------------------EGP 151 (203)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSS------------------SSC
T ss_pred ccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcccc------------------CCC
Confidence 9988 443 23 9999999999999888889999999999999995555443321100 001
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
....+.+++.+++++ ||+++.+...
T Consensus 152 ~~~~~~~el~~~~~~-gf~i~~~~~~ 176 (203)
T 1pjz_A 152 PFSVPQTWLHRVMSG-NWEVTKVGGQ 176 (203)
T ss_dssp CCCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred CCCCCHHHHHHHhcC-CcEEEEeccc
Confidence 112578999999998 9998777654
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=135.62 Aligned_cols=150 Identities=15% Similarity=0.101 Sum_probs=106.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NV 263 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~ 263 (370)
.+...+. ..+..+|||||||+|.++..+++..|..+++++|+ +.+++.+++. .+++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3333333 34578999999999999999999999899999998 8888877642 179999999965 33
Q ss_pred CC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 264 PR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 264 p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
+. . |+|++..++||+++++...+|++++++|+|||.+++........ ... ......... ......++.++
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~-~~~------~~~~~~~~~-~~~~~~~~~~~ 170 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNF-HYG------NLFEGNLRH-RDHRFEWTRKE 170 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGG-CCC------CT-----GG-GCCTTSBCHHH
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhh-hhc------ccCcccccc-cCceeeecHHH
Confidence 32 3 99999999999998888899999999999999666544321110 000 000000000 11333468888
Q ss_pred HH----HHHHhCCCCcce
Q 017495 342 YE----ALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~----~ll~~aGf~~v~ 355 (370)
+. ++++++||++..
T Consensus 171 l~~~~~~l~~~~Gf~v~~ 188 (219)
T 3jwg_A 171 FQTWAVKVAEKYGYSVRF 188 (219)
T ss_dssp HHHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHCCcEEEE
Confidence 88 889999997643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-16 Score=142.82 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=114.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~- 266 (370)
..++..+....+..+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+..
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f 90 (284)
T 3gu3_A 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 90 (284)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCe
Confidence 344444433667899999999999999999999985 89999998 8888766542 379999999998 55544
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec-----CC---CCCCCCccchhhhhhhhHHhh-hcCCCccc
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI-----LP---LVPENQASSHIVFEQDLFMLA-QTTGGRER 337 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~-----~~---~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~ 337 (370)
|+|++..++|++++. ..+|++++++|+|||++++.++. .. ++...+.......+..+.... ...+....
T Consensus 91 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (284)
T 3gu3_A 91 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 168 (284)
T ss_dssp EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTT
T ss_pred eEEEECChhhcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhccccc
Confidence 999999999999876 58999999999999999999876 11 110000000011111111110 01134455
Q ss_pred CHHHHHHHHHhCCCCcceEEe
Q 017495 338 SKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+..++.++|++|||+.+++..
T Consensus 169 ~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 169 IGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp GGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEE
Confidence 677899999999999987643
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=147.32 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC--------------CCCeEEeccCCC-------C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF--------------PGVEHVGGDMFE-------N 262 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~D~~~-------~ 262 (370)
.+..+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++++ .+++++.+|+.+ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 356899999999999999999987 7889999998 8888877643 589999999987 4
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHH
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKK 340 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~ 340 (370)
++.+ |+|++..++|++++. ..+|++++++|||||+|++.+......... . .......... ..+..++.+
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~-----~-~~~~~~~~~~-~~~~~~~~~ 232 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLSE-----A-AQQDPILYGE-CLGGALYLE 232 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCCH-----H-HHHCHHHHHT-TCTTCCBHH
T ss_pred CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccCH-----h-HhhhHHHhhc-ccccCCCHH
Confidence 4443 999999999998865 689999999999999999998876532111 1 1111111211 234567889
Q ss_pred HHHHHHHhCCCCcceEEe
Q 017495 341 EYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~ 358 (370)
+|.++|+++||+.+++..
T Consensus 233 ~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 233 DFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHCCCceEEEEe
Confidence 999999999999887654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.7e-16 Score=137.96 Aligned_cols=132 Identities=20% Similarity=0.163 Sum_probs=107.6
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+..+. . |+|++..++|+
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence 35999999999999999977 6778999998 8888776542 3599999999984343 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
+++++...+|++++++|+|||+|++.+......... .....+.++|.++|+++||+++.+.
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~~~~ 205 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAVSVE 205 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEEEEE
Confidence 998888899999999999999999988755432111 1112578999999999999999988
Q ss_pred ecC
Q 017495 358 CCA 360 (370)
Q Consensus 358 ~~~ 360 (370)
..+
T Consensus 206 ~~~ 208 (235)
T 3lcc_A 206 ENP 208 (235)
T ss_dssp ECT
T ss_pred ecC
Confidence 764
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=135.90 Aligned_cols=143 Identities=12% Similarity=0.053 Sum_probs=103.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CCCC-C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NVPR-G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~p~-~-D~i 269 (370)
..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++. .+++++.+|+.. +.+. . |+|
T Consensus 27 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v 106 (217)
T 3jwh_A 27 QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA 106 (217)
T ss_dssp HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence 34568999999999999999999988899999998 8888776542 279999999865 3332 3 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH----HH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE----AL 345 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~l 345 (370)
++..++||+++++...+|++++++|+|||.+++........ ....+.............++.+++. ++
T Consensus 107 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 178 (217)
T 3jwh_A 107 TVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNV--------KFANLPAGKLRHKDHRFEWTRSQFQNWANKI 178 (217)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHH--------HTC-----------CCSCBCHHHHHHHHHHH
T ss_pred eeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccch--------hhcccccccccccccccccCHHHHHHHHHHH
Confidence 99999999998888899999999999999777654421100 0000000000001123346888888 89
Q ss_pred HHhCCCCcce
Q 017495 346 AKNSGFSGLE 355 (370)
Q Consensus 346 l~~aGf~~v~ 355 (370)
++++||+++.
T Consensus 179 ~~~~Gf~v~~ 188 (217)
T 3jwh_A 179 TERFAYNVQF 188 (217)
T ss_dssp HHHSSEEEEE
T ss_pred HHHcCceEEE
Confidence 9999998643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=142.49 Aligned_cols=217 Identities=10% Similarity=-0.006 Sum_probs=139.0
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh-hhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK-FLI 121 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~-~l~ 121 (370)
++|..| .+ |.|++|||+.+++ +++.+++||++|++.|+++.. ++ |++++.+. ++.
T Consensus 47 ~ll~~L-~~---------~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~---------~~-~~lt~~~~~~l~ 102 (373)
T 2qm3_A 47 NVLSAV-LA---------SDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE---------DG-VKLTEKGEELVA 102 (373)
T ss_dssp HHHHHH-HH---------CSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS---------SS-SEECHHHHHHHH
T ss_pred HHHHHh-cC---------CCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC---------CC-EEECHHHHHHHH
Confidence 789999 55 7999999999999 999999999999999999852 24 99998775 444
Q ss_pred cCCCCCC-CChhHHHH--hhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHH
Q 017495 122 KNQDDDD-GSVAPLFL--LHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKI 198 (370)
Q Consensus 122 ~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l 198 (370)
....... ........ ......+...|..+.+.++....+. ..|+.....++ ...... . ..
T Consensus 103 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~--~~~~~~--------l-~~ 165 (373)
T 2qm3_A 103 EYGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPL------HEFDQAYVTPE--TTVARV--------I-LM 165 (373)
T ss_dssp HHTCCCCCC------------CGGGHHHHHHHHHHHTTCCCCC------GGGTCCCBCHH--HHHHHH--------H-HH
T ss_pred hcCccccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccc------hhcCCeecCHH--HHHHHH--------H-HH
Confidence 4221000 01100000 0000112223445556555432211 11111000111 111110 0 01
Q ss_pred HHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC----C-
Q 017495 199 LDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR----G- 266 (370)
Q Consensus 199 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~----~- 266 (370)
. ... ..+..+||||| |+|.++..++...|..+++++|+ +.+++.++++ .+++++.+|+.+..|. .
T Consensus 166 ~-~~~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~f 242 (373)
T 2qm3_A 166 H-TRG-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKF 242 (373)
T ss_dssp H-HTT-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCB
T ss_pred h-hcC-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCc
Confidence 1 111 23468999999 99999999999888889999998 8998887653 3799999999884442 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++...++.. ....+|+++.++|+|||++++.+..
T Consensus 243 D~Vi~~~p~~~~---~~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 243 DTFITDPPETLE---AIRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SEEEECCCSSHH---HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred cEEEECCCCchH---HHHHHHHHHHHHcccCCeEEEEEEe
Confidence 999998776542 2479999999999999976665544
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=138.15 Aligned_cols=153 Identities=16% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC-CEEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG-DAIFLK 272 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~-D~i~~~ 272 (370)
.++..+. ..+..+|||||||+|.++..+++ ++.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.
T Consensus 48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~ 124 (279)
T 3ccf_A 48 DLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSN 124 (279)
T ss_dssp HHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEE
T ss_pred HHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEc
Confidence 4455555 56778999999999999999998 7889999998 8888877643 679999999987 55444 999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh------hcCCCcccCHHHHHHHH
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA------QTTGGRERSKKEYEALA 346 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~~t~~e~~~ll 346 (370)
+++|++++. ..+|++++++|+|||++++..+..... .............. .......++.++|.++|
T Consensus 125 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (279)
T 3ccf_A 125 AMLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI-----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNIL 197 (279)
T ss_dssp SCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT-----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHH
T ss_pred chhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch-----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHH
Confidence 999998865 589999999999999999977643221 00111111110000 00012345899999999
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||+++++...
T Consensus 198 ~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 198 EKQGFDVTYAALF 210 (279)
T ss_dssp HHHTEEEEEEEEE
T ss_pred HHcCCEEEEEEEe
Confidence 9999999876654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=134.85 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=109.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i 269 (370)
.+...++ ..+..+|||||||+|.++..+++.. ..+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 3444444 5567899999999999999999873 238999998 8888776643 468999999987 55443 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC--CCCCCcc--------chhhhhh-----hhHHhhhcCCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL--VPENQAS--------SHIVFEQ-----DLFMLAQTTGG 334 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~--~~~~~~~--------~~~~~~~-----d~~~~~~~~~~ 334 (370)
++..++||+++. ..+|++++++|+|||++++....... ....... ......+ ....+......
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVK 189 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCE
T ss_pred EEeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEE
Confidence 999999998754 68999999999999999997753210 0000000 0000000 00000001122
Q ss_pred cccCHHHHHHHHHhCCCCcceEEec
Q 017495 335 RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 335 ~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..++.++|.++|+++||+++++...
T Consensus 190 ~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 190 HHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EeccHHHHHHHHHHcCCEeeeeccC
Confidence 3368999999999999999988764
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=135.43 Aligned_cols=161 Identities=10% Similarity=0.043 Sum_probs=112.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hh------HHHhCCCC-------CCCeEEecc-C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PH------VLANAPSF-------PGVEHVGGD-M 259 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~------~~~~a~~~-------~rv~~~~~D-~ 259 (370)
..++..+. ..+..+|||||||+|.++..+++.+ |+.+++++|+ +. +++.+++. ++++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35556565 6778899999999999999999996 7789999998 54 56655432 479999998 4
Q ss_pred CC---CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh----
Q 017495 260 FE---NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ---- 330 (370)
Q Consensus 260 ~~---~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~---- 330 (370)
.. +++.+ |+|++..++||+++.. .+++.++++++|||++++.+...+..................+...
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSD 189 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCT
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccc
Confidence 43 33433 9999999999998774 4788888888889999999988765321110000000000000000
Q ss_pred -cCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 331 -TTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 331 -~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
......++.++|.++++++||+++++...
T Consensus 190 ~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 190 VANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp TCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 00123579999999999999999887765
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.9e-15 Score=131.71 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=109.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCC-CCCCC--CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~-~~p~~--D~i 269 (370)
+++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++++..+|+.. +.+.. |+|
T Consensus 28 ~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v 105 (235)
T 3sm3_A 28 LQEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA 105 (235)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence 346789999999999999999987 679999998 8777766531 257999999987 55543 999
Q ss_pred EecccccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc--------------CCC
Q 017495 270 FLKWMLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT--------------TGG 334 (370)
Q Consensus 270 ~~~~vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------------~~~ 334 (370)
++..++|++++. ....+|++++++|+|||++++.++....... .........+...... ...
T Consensus 106 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (235)
T 3sm3_A 106 VMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK---LYRKRYLHDFPITKEEGSFLARDPETGETEFIA 182 (235)
T ss_dssp EEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH---HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEE
T ss_pred EEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH---HHHHHhhhhccchhhhcceEecccccCCcceee
Confidence 999999999765 4668999999999999999999886643210 0000000011110000 001
Q ss_pred cccCHHHHHHHHHhCCCCcceEEec
Q 017495 335 RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 335 ~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..++.++|.++|+++||+++++...
T Consensus 183 ~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 183 HHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp ECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred EeCCHHHHHHHHHHcCCEEEEEEec
Confidence 3568999999999999999987653
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-15 Score=134.58 Aligned_cols=151 Identities=15% Similarity=0.125 Sum_probs=110.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC-CCCCC--CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE-NVPRG--DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~-~~p~~--D~i~~ 271 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++ ..+++++.+|+.+ + +.. |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 4555555 56778999999999999999999999999999998 888887765 3679999999987 4 443 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhh--HHhhh----cCCCcccCHHHHHHH
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDL--FMLAQ----TTGGRERSKKEYEAL 345 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--~~~~~----~~~~~~~t~~e~~~l 345 (370)
..++|++++. ..+|++++++|+|||++++.++..... ............ +.... ......++.++|.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQE---PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNA 176 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTS---HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCc---HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHH
Confidence 9999998754 689999999999999999988643221 000000000000 00000 012345689999999
Q ss_pred HHhCCCCcc
Q 017495 346 AKNSGFSGL 354 (370)
Q Consensus 346 l~~aGf~~v 354 (370)
|+++||++.
T Consensus 177 l~~aGf~v~ 185 (259)
T 2p35_A 177 LSPKSSRVD 185 (259)
T ss_dssp HGGGEEEEE
T ss_pred HHhcCCceE
Confidence 999999743
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=135.34 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=109.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---CCCeEEeccCCC-CCCCC--CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---PGVEHVGGDMFE-NVPRG--DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~D~~~-~~p~~--D~i 269 (370)
.+...++ ..+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV 112 (253)
T ss_dssp HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence 4444444 446789999999999999999998654 8999998 8888776543 579999999987 55543 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC--CC--------CCCc-cchhhhhhh-----hHHhhhcCC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL--VP--------ENQA-SSHIVFEQD-----LFMLAQTTG 333 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~--~~--------~~~~-~~~~~~~~d-----~~~~~~~~~ 333 (370)
++..++|++++. ..+|++++++|+|||+|++....... .. .... .......++ .........
T Consensus 113 ~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (253)
T 3g5l_A 113 LSSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQ 190 (253)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEE
T ss_pred EEchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCc
Confidence 999999999654 68999999999999999997543210 00 0000 000000000 000000001
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...++.++|.++|+++||+++++...
T Consensus 191 ~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 191 KYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred cEecCHHHHHHHHHHcCCeeeeeecC
Confidence 11249999999999999999998754
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=132.07 Aligned_cols=153 Identities=16% Similarity=0.052 Sum_probs=109.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC-----CCCC--CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN-----VPRG--DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~-----~p~~--D~ 268 (370)
.++..+. ..++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++..++.+..+|+.+. .+.. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4455454 445689999999999999999987 668999998 88888887777888888887652 2222 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc-----CCCcccCHHHHH
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT-----TGGRERSKKEYE 343 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~~t~~e~~ 343 (370)
|++.+++| +.+. ..+|++++++|+|||+|++.++........... ..+......... .....++.++|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVPGGALVIQTLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTLASWL 193 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCHHHHH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCCCeEEEEEecCccccCccccc---cccchhhhhccccCcccceEEEecHHHHH
Confidence 99999999 5544 689999999999999999988765433221100 000000000000 012345899999
Q ss_pred HHHHhCCCCcceEEe
Q 017495 344 ALAKNSGFSGLEIVC 358 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~ 358 (370)
++|+++||+++++..
T Consensus 194 ~~l~~aGf~~~~~~~ 208 (227)
T 3e8s_A 194 NALDMAGLRLVSLQE 208 (227)
T ss_dssp HHHHHTTEEEEEEEC
T ss_pred HHHHHcCCeEEEEec
Confidence 999999999998775
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.1e-15 Score=135.97 Aligned_cols=156 Identities=15% Similarity=0.141 Sum_probs=111.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C-CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N-VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~-~p~ 265 (370)
..++..+. . ++.+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ++++++.+|+.+ + .+.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555444 2 3679999999999999999987 679999998 8888877642 578999999987 3 344
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhh-------cCCCcc
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQ-------TTGGRE 336 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~~~ 336 (370)
+ |+|++..++||+++. ..+|++++++|+|||++++.++........ ......+....... ......
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLLMH---NMVAGNFDYVQAGMPKKKKRTLSPDYP 209 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHHHH---HHHTTCHHHHHTTCCCC----CCCSCC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHHHH---HHHhcCHHHHhhhccccccccCCCCCC
Confidence 3 999999999999866 689999999999999999988754221000 00000000000000 012245
Q ss_pred cCHHHHHHHHHhCCCCcceEEecC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
++.++|.++|+++||+++++..+.
T Consensus 210 ~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 210 RDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp BCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCHHHHHHHHHHCCCceeeeeeEE
Confidence 689999999999999999887764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=125.50 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=107.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEe
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFL 271 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~ 271 (370)
.++..+ .++..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 444444 356789999999999999999986 568999998 8888776653 579999999987 55543 99999
Q ss_pred c-ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCC
Q 017495 272 K-WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSG 350 (370)
Q Consensus 272 ~-~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aG 350 (370)
. .++|++++++...+|++++++|+|||++++..... ..++.+++.++++++|
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~---------------------------~~~~~~~~~~~l~~~G 166 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG---------------------------RGWVFGDFLEVAERVG 166 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT---------------------------SSCCHHHHHHHHHHHT
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC---------------------------CCcCHHHHHHHHHHcC
Confidence 8 89999988888999999999999999999865321 1146889999999999
Q ss_pred CCcceEEec
Q 017495 351 FSGLEIVCC 359 (370)
Q Consensus 351 f~~v~~~~~ 359 (370)
|++++....
T Consensus 167 f~~~~~~~~ 175 (195)
T 3cgg_A 167 LELENAFES 175 (195)
T ss_dssp EEEEEEESS
T ss_pred CEEeeeecc
Confidence 999887554
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.2e-15 Score=133.17 Aligned_cols=147 Identities=16% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++ ..+++++.+|+.+ +.+.+ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 567789999999999999999986 578999998 888776643 2579999999987 55543 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC---CCcccCHHHHHHHHHhCCCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT---GGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~t~~e~~~ll~~aGf~ 352 (370)
|++++. ..+|++++++|+|||++++. ...++ ..........+..+....... ....++.+++.++|+++||+
T Consensus 115 ~~~~~~--~~~l~~~~~~L~pgG~l~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKPGGALLEG-WDQAE--ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEEEEEEEEE-EEEEC--CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hhcCCH--HHHHHHHHHHCCCCcEEEEE-ecCCC--ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 999854 68999999999999999998 22211 011000011111111110000 11245789999999999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
++.+..
T Consensus 190 ~~~~~~ 195 (263)
T 2yqz_A 190 PRTREV 195 (263)
T ss_dssp CEEEEE
T ss_pred cceEEE
Confidence 876543
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-15 Score=131.09 Aligned_cols=96 Identities=23% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecc-ccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKW-MLH 276 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh 276 (370)
++..+|||||||+|.++..+++. .+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. ++|
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLN 108 (243)
T ss_dssp CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence 35689999999999999999886 78999998 8888877642 479999999987 55544 9999986 999
Q ss_pred CC-ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GW-TDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~-~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+ +.++...+|++++++|+|||++++.-
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 98 45677899999999999999999843
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=133.26 Aligned_cols=162 Identities=16% Similarity=0.105 Sum_probs=110.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEecc-cccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKW-MLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~-vLh~ 277 (370)
+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++.. +|||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 5689999999999999999987 468999998 8888777643 279999999987 55544 9999998 9999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeecCCCC----CCCCc--------cchhh------hhhhhHHhhhc-------
Q 017495 278 WTD-EHCLKLLKNCWEALPENGKVIIVESILPLV----PENQA--------SSHIV------FEQDLFMLAQT------- 331 (370)
Q Consensus 278 ~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~~~~----~~~~~--------~~~~~------~~~d~~~~~~~------- 331 (370)
+++ ++...+|++++++|+|||++++........ ..... ..+.. ....+.++...
T Consensus 115 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF 194 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCccccc
Confidence 843 577899999999999999999844321100 00000 00000 00000000000
Q ss_pred ---CCCcccCHHHHHHHHHhCCCCcceEEec--------CCCeeEEEEeC
Q 017495 332 ---TGGRERSKKEYEALAKNSGFSGLEIVCC--------AYNSWVMEFHK 370 (370)
Q Consensus 332 ---~~~~~~t~~e~~~ll~~aGf~~v~~~~~--------~~~~~~~e~~k 370 (370)
.....++.++|.++|+++||+++++... .....++.++|
T Consensus 195 ~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK 244 (246)
T 1y8c_A 195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEe
Confidence 0123459999999999999999998754 12344666665
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-15 Score=127.61 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=102.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEec
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLK 272 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~ 272 (370)
..++..+....+..+|||||||+|.++..+. .+++++|.... +++++.+|+.+ +.+.+ |+|++.
T Consensus 56 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~ 122 (215)
T 2zfu_A 56 DRIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC 122 (215)
T ss_dssp HHHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred HHHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence 3455555434567899999999999988772 58899997322 58899999987 55543 999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+++|+ . +...+|++++++|+|||++++.+.... ..+.++|.++++++||+
T Consensus 123 ~~l~~-~--~~~~~l~~~~~~L~~gG~l~i~~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 123 LSLMG-T--NIRDFLEEANRVLKPGGLLKVAEVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp SCCCS-S--CHHHHHHHHHHHEEEEEEEEEEECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred hhccc-c--CHHHHHHHHHHhCCCCeEEEEEEcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 99984 4 347899999999999999999875321 12688999999999999
Q ss_pred cceEEecCCCeeEEEEeC
Q 017495 353 GLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~~~~~e~~k 370 (370)
++..........++.++|
T Consensus 173 ~~~~~~~~~~~~~~~~~k 190 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQK 190 (215)
T ss_dssp EEEEECCSTTCEEEEEEE
T ss_pred EEEEecCCCeEEEEEEEe
Confidence 988776666666676654
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6e-15 Score=126.34 Aligned_cols=142 Identities=13% Similarity=0.053 Sum_probs=109.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-D 267 (370)
.+++.+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3444444 445679999999999999999986 669999998 8888776542 369999999987 44334 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..++|++++++...+|++++++|+|||++++.+.........+ ......++.+++.++|+
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~ 163 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT----------------VGFPFAFKEGELRRYYE 163 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC----------------SCCSCCBCTTHHHHHTT
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC----------------CCCCCccCHHHHHHHhc
Confidence 99999999999977788999999999999999999888765431110 01223457889999998
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
+ |++++....
T Consensus 164 ~--f~~~~~~~~ 173 (199)
T 2xvm_A 164 G--WERVKYNED 173 (199)
T ss_dssp T--SEEEEEECC
T ss_pred C--CeEEEeccc
Confidence 7 988876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.6e-16 Score=140.62 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=104.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------------------------------ 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------------------------------ 249 (370)
+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++.
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 578999999999999999999999999999998 8877766432
Q ss_pred ----------------------------CCCeEEeccCCCCC------CC-C-CEEEecccccCC----ChhHHHHHHHH
Q 017495 250 ----------------------------PGVEHVGGDMFENV------PR-G-DAIFLKWMLHGW----TDEHCLKLLKN 289 (370)
Q Consensus 250 ----------------------------~rv~~~~~D~~~~~------p~-~-D~i~~~~vLh~~----~d~~~~~iL~~ 289 (370)
.+|+|+.+|+.... +. . |+|++..+++++ +++....+|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 37999999998632 22 3 999999999665 66788899999
Q ss_pred HHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHh--CCCCcceEEec
Q 017495 290 CWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKN--SGFSGLEIVCC 359 (370)
Q Consensus 290 ~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~--aGf~~v~~~~~ 359 (370)
++++|+|||+|++............. ... .+... . ......++++.++|.+ +||+.++++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~~~~---~~~--~~~~~--~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~ 269 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGKRKT---LTE--TIYKN--Y-YRIQLKPEQFSSYLTSPDVGFSSYELVAT 269 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHTTTT---SCH--HHHHH--H-HHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred HHHHhCCCcEEEEecCCchhhhhhhc---ccH--HHHhh--h-hcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence 99999999999985432111000000 000 00000 0 1112347899999999 99998887665
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.2e-15 Score=131.32 Aligned_cols=149 Identities=16% Similarity=0.106 Sum_probs=106.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---CCCCeEEeccCCC-CCCC-------CCEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---FPGVEHVGGDMFE-NVPR-------GDAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~D~~~-~~p~-------~D~i~~~ 272 (370)
..+..+|||||||+|.++..+++.++ +++++|. +.+++.+++ ..+++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 45678999999999999999999887 7899998 888877654 2479999999987 3221 4999999
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc----hhhhhhhhHHhhhcCCCcccCHHHHHHHHHh
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASS----HIVFEQDLFMLAQTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~----~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~ 348 (370)
.++|++++++...+|++++++|+|||+|++.+...++........ .........+-. ......++.+++.++|
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 208 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEH-GIRPGIFTAEDIELYF-- 208 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTT-TCCCCCCCHHHHHHHC--
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccHHHHHHHhCCCCCchhhhhcccc-CCCCCccCHHHHHHHh--
Confidence 999999988889999999999999999999998654310000000 000000000000 0011235899999999
Q ss_pred CCCCcceEEe
Q 017495 349 SGFSGLEIVC 358 (370)
Q Consensus 349 aGf~~v~~~~ 358 (370)
+||+++....
T Consensus 209 aGf~~~~~~~ 218 (245)
T 3ggd_A 209 PDFEILSQGE 218 (245)
T ss_dssp TTEEEEEEEC
T ss_pred CCCEEEeccc
Confidence 9999887544
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=126.69 Aligned_cols=136 Identities=17% Similarity=0.079 Sum_probs=102.6
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhHH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~~ 283 (370)
..+|||||||+|.++..+++. +++|. +.+++.+++. +++++.+|+.+ +.+.. |+|++.++||++++.
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~-- 118 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 118 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--
Confidence 789999999999999988764 88998 8888877665 79999999887 55543 999999999998765
Q ss_pred HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH-hhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 284 LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM-LAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
..+|++++++|+|||++++.+...... .......... .........++.++|.++|+++||+++++...
T Consensus 119 ~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 119 ERALKEAYRILKKGGYLIVGIVDRESF-------LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEECSSSH-------HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCcEEEEEEeCCccH-------HHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 689999999999999999988644220 0000000000 00011234579999999999999999988765
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-15 Score=129.38 Aligned_cols=151 Identities=13% Similarity=-0.029 Sum_probs=106.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
..+..+|||||||+|..+..++.. ++.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++..++
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 99 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI 99 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred cCCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence 456789999999999985544443 5679999998 8888776542 579999999987 65543 999999999
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
||++.++...+|++++++|+|||++++.+...++.............+.............++.+++.++|+++||...+
T Consensus 100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~ 179 (209)
T 2p8j_A 100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179 (209)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence 99987788999999999999999999999876543211100000000000000000012356899999999999987665
Q ss_pred E
Q 017495 356 I 356 (370)
Q Consensus 356 ~ 356 (370)
.
T Consensus 180 ~ 180 (209)
T 2p8j_A 180 D 180 (209)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=127.06 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=109.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---CCCCC--CEE
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---NVPRG--DAI 269 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~~p~~--D~i 269 (370)
..+++.++ .+..+|||||||+|.++..+++. + .+++++|. +.+++.+++.. .++..+|+.+ +.+.. |+|
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEE
Confidence 34555443 46789999999999999999987 4 89999998 88888776542 4788899875 33433 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh---------hcCCCcccCHH
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA---------QTTGGRERSKK 340 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~~~~t~~ 340 (370)
++.+++||+++. ..+|++++++|+|||++++..+..... .....+.... ...+...++.+
T Consensus 98 ~~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (230)
T 3cc8_A 98 IFGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---------SVLAPLLAGNWTYTEYGLLDKTHIRFFTFN 166 (230)
T ss_dssp EEESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---------HHHHHHHTTCCCCBSSSTTBTTCCCCCCHH
T ss_pred EECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---------HHHHHHhcCCceeccCCCCCcceEEEecHH
Confidence 999999999866 589999999999999999987653220 0000000000 00122456899
Q ss_pred HHHHHHHhCCCCcceEEecC
Q 017495 341 EYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~~ 360 (370)
+|.++|+++||+++++....
T Consensus 167 ~~~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 167 EMLRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHcCCeEEEEEecc
Confidence 99999999999999887753
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=128.49 Aligned_cols=97 Identities=13% Similarity=0.066 Sum_probs=85.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
...+|||||||+|.++..|++.+ .+++++|+ +.+++.+++..+++++.+|+.+ +++.+ |+|++..++|+++.
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~-- 114 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDL-- 114 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCH--
T ss_pred CCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhH--
Confidence 45799999999999999999875 57999998 9999999988999999999988 77765 99999999988764
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 283 CLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+++++++++|||||+|++.....+
T Consensus 115 -~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 115 -DRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp -HHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -HHHHHHHHHHcCCCCEEEEEECCCC
Confidence 3789999999999999999887543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=130.45 Aligned_cols=142 Identities=15% Similarity=0.046 Sum_probs=95.2
Q ss_pred CCCCeEEEEcCcccHHHH----HHHhhCCCCeE--EEeeh-hhHHHhCCCC-------CCCeE--EeccCCC-C------
Q 017495 206 DGLKVLVDVGGGIGVTLG----MITSRYPCIKG--ISFDL-PHVLANAPSF-------PGVEH--VGGDMFE-N------ 262 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~----~l~~~~p~~~~--~~~D~-p~~~~~a~~~-------~rv~~--~~~D~~~-~------ 262 (370)
.+..+|||||||+|.++. .++.++|+.++ +++|. +.+++.+++. .++++ ..++..+ +
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 356799999999997654 44556788854 99998 8888765432 23444 4444432 1
Q ss_pred CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc-CCCcccCH
Q 017495 263 VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT-TGGRERSK 339 (370)
Q Consensus 263 ~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~t~ 339 (370)
++. . |+|++.++|||++|. .++|++++++|||||+|++.+..... . ....+......... .....++.
T Consensus 131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----G---WDKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----H---HHHHHHHHGGGSCCCTTCCCCCH
T ss_pred cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCCc----c---HHHHHHHHHHhccCCCcccCCCH
Confidence 233 3 999999999999976 58899999999999999998754211 0 11111111100000 01235689
Q ss_pred HHHHHHHHhCCCCcceE
Q 017495 340 KEYEALAKNSGFSGLEI 356 (370)
Q Consensus 340 ~e~~~ll~~aGf~~v~~ 356 (370)
++|.++|+++||+++..
T Consensus 202 ~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999998763
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.4e-14 Score=126.62 Aligned_cols=133 Identities=8% Similarity=-0.073 Sum_probs=103.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------------------CCCCeEEeccCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------------------FPGVEHVGGDMFE 261 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------------------~~rv~~~~~D~~~ 261 (370)
.+..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..+++++++|+++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~ 144 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD 144 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence 46789999999999999999986 569999998 888876632 1468999999998
Q ss_pred -CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCccc
Q 017495 262 -NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRER 337 (370)
Q Consensus 262 -~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 337 (370)
+.+ .. |+|++..+||++++++...++++++++|||||+++++....+.... .......
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~------------------~g~~~~~ 206 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH------------------AGPPFYV 206 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSC------------------CCSSCCC
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccC------------------CCCCCCC
Confidence 443 33 9999999999999888889999999999999999876654322100 0001125
Q ss_pred CHHHHHHHHHhCCCCcceEEec
Q 017495 338 SKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+.+++.++|.. +|+++.+...
T Consensus 207 ~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 207 PSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CHHHHHHHHTT-TEEEEEEEEE
T ss_pred CHHHHHHHhhC-CeEEEEEecc
Confidence 78999999988 5998776543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-14 Score=129.16 Aligned_cols=163 Identities=18% Similarity=0.178 Sum_probs=109.5
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC--------CCC
Q 017495 182 VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS--------FPG 251 (370)
Q Consensus 182 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--------~~r 251 (370)
.|.+....+.......+.. +. ..+..+|||||||+|.++..+++.+ +..+++++|+ +.+++.+++ ..+
T Consensus 13 ~y~~~rp~y~~~~~~~l~~-~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~ 90 (299)
T 3g5t_A 13 RYSSSRPSYPSDFYKMIDE-YH-DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKN 90 (299)
T ss_dssp HHHHHSCCCCHHHHHHHHH-HC-CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTT
T ss_pred HHhhcCCCCCHHHHHHHHH-Hh-cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCc
Confidence 3444333333333434443 32 3467899999999999999999987 8899999998 888887754 368
Q ss_pred CeEEeccCCC-CCCC------C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 252 VEHVGGDMFE-NVPR------G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 252 v~~~~~D~~~-~~p~------~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
++++.+|+.+ +.+. + |+|++..++|++ + ...+|++++++|+|||.|++.+...+.....+ .....
T Consensus 91 v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~---~~~~~ 164 (299)
T 3g5t_A 91 VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYADPIFPDYP---EFDDL 164 (299)
T ss_dssp EEEEECCTTCCGGGCTTTTTSSCEEEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEEEEECTTCG---GGTTH
T ss_pred eEEEEcCHHhCCccccccccCCCeeEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecCCccccCcH---HHHHH
Confidence 9999999988 5444 3 999999999998 3 46899999999999999999555432111111 11111
Q ss_pred hhhHHhhh-cCCCcc--cCHHHHHHHHHhCCCC
Q 017495 323 QDLFMLAQ-TTGGRE--RSKKEYEALAKNSGFS 352 (370)
Q Consensus 323 ~d~~~~~~-~~~~~~--~t~~e~~~ll~~aGf~ 352 (370)
+.-..... ..+... ...+.+.++++++||.
T Consensus 165 ~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gfp 197 (299)
T 3g5t_A 165 MIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLD 197 (299)
T ss_dssp HHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCCC
T ss_pred HHHhccCcccccchhhchhhHHHHHhhhccCCC
Confidence 11111100 001111 3456779999999994
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-14 Score=127.83 Aligned_cols=141 Identities=11% Similarity=0.093 Sum_probs=103.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C------------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P------------------------------ 250 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~------------------------------ 250 (370)
..+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 34568999999999999998888665 58999998 8877766431 1
Q ss_pred --CC-eEEeccCCCC--CCC----C-CEEEecccccCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 251 --GV-EHVGGDMFEN--VPR----G-DAIFLKWMLHGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 251 --rv-~~~~~D~~~~--~p~----~-D~i~~~~vLh~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
++ +++.+|+.+. .+. . |+|++..+||++++ ++...+|++++++|+|||+|++.+..... .
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~--- 204 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSS-----Y--- 204 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC-----E---
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCc-----e---
Confidence 17 8999999872 233 3 99999999995433 26679999999999999999998854321 0
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
....+. .......+.++|.++|+++||+++++....
T Consensus 205 -~~~~~~-----~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 240 (265)
T 2i62_A 205 -YMIGEQ-----KFSSLPLGWETVRDAVEEAGYTIEQFEVIS 240 (265)
T ss_dssp -EEETTE-----EEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred -EEcCCc-----cccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence 000000 001224578999999999999999887654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.3e-15 Score=134.90 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=83.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC-C---CCCC--C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE-N---VPRG--D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~-~---~p~~--D 267 (370)
..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .++.+..+|+.+ + ++.. |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 446789999999999999999997 449999998 8888877531 468899999877 4 4543 9
Q ss_pred EEEec-ccccCCCh-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 268 AIFLK-WMLHGWTD-----EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~-~vLh~~~d-----~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+|++. +++||+++ ++...+|++++++|+|||++++..+
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998 89999998 6678999999999999999998765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-14 Score=131.15 Aligned_cols=154 Identities=17% Similarity=0.024 Sum_probs=108.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CC-CC-C-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NV-PR-G-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~-p~-~-D~i~~~ 272 (370)
..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +. +. . |+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~ 140 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ 140 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence 356789999999999999998876 5568999998 8888766542 358999999987 55 33 3 999999
Q ss_pred ccccC--CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC--------CCCCcc----------ch-hhhhhhhHHhhh-
Q 017495 273 WMLHG--WTDEHCLKLLKNCWEALPENGKVIIVESILPLV--------PENQAS----------SH-IVFEQDLFMLAQ- 330 (370)
Q Consensus 273 ~vLh~--~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~--------~~~~~~----------~~-~~~~~d~~~~~~- 330 (370)
.++|+ .+.++...+|++++++|+|||+|++..+....- ...... .. ....+.+.....
T Consensus 141 ~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 220 (298)
T 1ri5_A 141 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSV 220 (298)
T ss_dssp SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSC
T ss_pred chhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhh
Confidence 99998 566778899999999999999999987643210 000000 00 000000000000
Q ss_pred -cCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 331 -TTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 331 -~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
......++.++|.++|+++||+++++...
T Consensus 221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 00123468999999999999999988765
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=135.77 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=108.2
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC------CCC-C
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE------NVP-R 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~------~~p-~ 265 (370)
....++..+. ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+......+.. +++ .
T Consensus 95 ~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~ 170 (416)
T 4e2x_A 95 LARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEG 170 (416)
T ss_dssp HHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCC
Confidence 3456666665 667889999999999999999985 458999998 8888887764 33333322211 122 2
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++.++|||+++. ..+|++++++|||||++++..+..... .....+.... ..+...++.++|.+
T Consensus 171 ~fD~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~---------~~~~~~~~~~-~~~~~~~s~~~l~~ 238 (416)
T 4e2x_A 171 PANVIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI---------VAKTSFDQIF-DEHFFLFSATSVQG 238 (416)
T ss_dssp CEEEEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH---------HHHTCGGGCS-TTCCEECCHHHHHH
T ss_pred CEEEEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh---------hhhcchhhhh-hhhhhcCCHHHHHH
Confidence 3 999999999999854 789999999999999999976543210 0000011110 12455679999999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+++++||+++++...+
T Consensus 239 ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 239 MAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHcCCEEEEEEEcc
Confidence 9999999999988865
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-13 Score=118.32 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=85.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D 267 (370)
..++.... ..+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. .+++++.+|+.+ +.+.. |
T Consensus 31 ~~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 107 (252)
T 1wzn_A 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (252)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence 34444443 446689999999999999999986 578999998 8888876542 369999999987 54544 9
Q ss_pred EEEec-ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 268 AIFLK-WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~-~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+|++. ..+++++.++...+|++++++|+|||.+++..+
T Consensus 108 ~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 99986 466777777888999999999999999987543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=120.25 Aligned_cols=141 Identities=23% Similarity=0.319 Sum_probs=102.0
Q ss_pred CCCeEEEEcCcc--cHHHHHHH-hhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC-----C---CC-C
Q 017495 207 GLKVLVDVGGGI--GVTLGMIT-SRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV-----P---RG-D 267 (370)
Q Consensus 207 ~~~~vLDvG~G~--G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~-----p---~~-D 267 (370)
+..+|||||||+ +..+..++ +..|+.+++++|. |.|++.+++. .+++++.+|+.++. | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 567999999997 44455554 4579999999998 9999988752 36899999998731 1 11 3
Q ss_pred -----EEEecccccCCChhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 268 -----AIFLKWMLHGWTDEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 268 -----~i~~~~vLh~~~d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
.|+++.+||++++++ ...+|++++++|+|||+|++.+.+.+..+. ......+...... .....||.++
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~-----~~~~~~~~~~~~g-~p~~~rs~~e 231 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQ-----EVGRVAREYAARN-MPMRLRTHAE 231 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHH-----HHHHHHHHHHHTT-CCCCCCCHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHH-----HHHHHHHHHHhcC-CCCccCCHHH
Confidence 688999999999875 578999999999999999999987643210 1111122221111 1345689999
Q ss_pred HHHHHHhCCCCcce
Q 017495 342 YEALAKNSGFSGLE 355 (370)
Q Consensus 342 ~~~ll~~aGf~~v~ 355 (370)
+.++|. ||+.++
T Consensus 232 i~~~f~--Glelve 243 (277)
T 3giw_A 232 AEEFFE--GLELVE 243 (277)
T ss_dssp HHHTTT--TSEECT
T ss_pred HHHHhC--CCcccC
Confidence 999995 998664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-13 Score=110.88 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=96.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCC--CEEEecccccCCChh-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRG--DAIFLKWMLHGWTDE- 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~--D~i~~~~vLh~~~d~- 281 (370)
.+..+|||||||+|.++..+++.. +++++|+ +.+++. ..+++++.+|+.++.+.. |+|+++..+|..++.
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~ 95 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDP 95 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccc
Confidence 345699999999999999999876 9999998 888877 467999999998865533 999998888865443
Q ss_pred ------HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 282 ------HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 282 ------~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
+...+++++.+.+ |||++++.+... ...+++.++++++||+.+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 96 IIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp TTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred cccCCcchHHHHHHHHhhC-CCCEEEEEEecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3457889999999 999999977422 1356899999999999988
Q ss_pred EEecC
Q 017495 356 IVCCA 360 (370)
Q Consensus 356 ~~~~~ 360 (370)
+....
T Consensus 146 ~~~~~ 150 (170)
T 3q87_B 146 LKVRK 150 (170)
T ss_dssp EEEEE
T ss_pred EEeec
Confidence 77754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=124.46 Aligned_cols=139 Identities=17% Similarity=0.089 Sum_probs=106.2
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEE
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAI 269 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i 269 (370)
++..+. ..+..+|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 333343 336789999999999999999987 569999998 8888776542 279999999987 44444 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
++..++||++++....+|++++++|+|||.+++......+....+ ......++.+++.++++.
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~- 251 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP----------------LPFSFTFAENELKEYYKD- 251 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC----------------CCccccCCHHHHHHHhcC-
Confidence 999999999988888999999999999999988877654431110 011234567888888865
Q ss_pred CCCcceEE
Q 017495 350 GFSGLEIV 357 (370)
Q Consensus 350 Gf~~v~~~ 357 (370)
|+++...
T Consensus 252 -~~~~~~~ 258 (286)
T 3m70_A 252 -WEFLEYN 258 (286)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 8877664
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=117.61 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=100.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
+. +|||||||+|.++..+++. +.+++++|. +.+++.+++. .+++++.+|+.+ +.+.. |+|++. +++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCC
T ss_pred CC-CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhc
Confidence 44 9999999999999999886 569999998 8888777643 378999999987 55543 999984 345
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
++.++...+|++++++|+|||++++.++...... ...... ......++.+++.++|+ ||+++.+.
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---------~~~~~~----~~~~~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ---------YNTGGP----KDLDLLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG---------GTSCCS----SSGGGCCCHHHHHHHCS--SSCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc---------CCCCCC----CcceeecCHHHHHHHhc--CceEEEEE
Confidence 6767788999999999999999999887654310 000000 00123568999999999 99999876
Q ss_pred ec
Q 017495 358 CC 359 (370)
Q Consensus 358 ~~ 359 (370)
..
T Consensus 170 ~~ 171 (202)
T 2kw5_A 170 NL 171 (202)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-14 Score=129.39 Aligned_cols=140 Identities=12% Similarity=0.037 Sum_probs=98.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------------------------- 249 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------------------------- 249 (370)
..+..+|||||||+|.++..++... ..+++++|+ +.+++.+++.
T Consensus 53 ~~~g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 53 GLQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 3466899999999998776655432 126999998 8888765421
Q ss_pred -CCCe-EEeccCCCC--CC---C-C-CEEEecccccCCC--hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 250 -PGVE-HVGGDMFEN--VP---R-G-DAIFLKWMLHGWT--DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 250 -~rv~-~~~~D~~~~--~p---~-~-D~i~~~~vLh~~~--d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
.++. ++.+|+.+. .+ . . |+|++..+||+.. .++...+|++++++|||||+|++.+......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~-------- 203 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS-------- 203 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE--------
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc--------
Confidence 0132 889999873 21 2 2 9999999999852 2466789999999999999999987643220
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
+. .... .......+.++|.++|+++||+++++...
T Consensus 204 ~~-~g~~-----~~~~~~~~~~~l~~~l~~aGF~i~~~~~~ 238 (263)
T 2a14_A 204 YM-VGKR-----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 238 (263)
T ss_dssp EE-ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred ce-eCCe-----EeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence 00 0000 00112358999999999999999987664
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-14 Score=125.13 Aligned_cols=100 Identities=13% Similarity=0.175 Sum_probs=83.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..+++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 5567899999999999999999875 48899998 877776654 25799999999883343 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 278 WTD-EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 278 ~~d-~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+++ +....+|++++++|+|||++++..+.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 986 45568999999999999999997763
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=118.13 Aligned_cols=142 Identities=16% Similarity=0.061 Sum_probs=101.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIF 270 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~ 270 (370)
.++..+. .+..+|||||||+|.++..+ +. +++++|. +.+++.+++. .+++++.+|+.+ +.+.+ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3444443 26789999999999998877 45 8999998 8888777654 579999999987 65553 9999
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh--hcCCCcccCHHHHHHHHHh
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA--QTTGGRERSKKEYEALAKN 348 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~t~~e~~~ll~~ 348 (370)
+.+++||+++. ..+|++++++|+|||++++.++..... +........... ...+...++.++++++|+
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~- 170 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRPGGALVVGVLEALSP-------WAALYRRLGEKGVLPWAQARFLAREDLKALLG- 170 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEEEEEEEEEEECTTSH-------HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC-
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCCCCEEEEEecCCcCc-------HHHHHHHHhhccCccccccccCCHHHHHHHhc-
Confidence 99999999854 689999999999999999988754321 000000000000 001244579999999999
Q ss_pred CCCCcceEEe
Q 017495 349 SGFSGLEIVC 358 (370)
Q Consensus 349 aGf~~v~~~~ 358 (370)
| +++...
T Consensus 171 -G--~~~~~~ 177 (211)
T 2gs9_A 171 -P--PEAEGE 177 (211)
T ss_dssp -S--CSEEEE
T ss_pred -C--cceeEE
Confidence 8 444433
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-14 Score=129.07 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=96.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-------------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P------------------------------- 250 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~------------------------------- 250 (370)
+..+|||||||+|... .++...+..+++++|+ +.+++.+++. .
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 5689999999999944 3444445669999998 8888755431 0
Q ss_pred -CCeEEeccCCC--C-----CCCC--CEEEecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccch
Q 017495 251 -GVEHVGGDMFE--N-----VPRG--DAIFLKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSH 318 (370)
Q Consensus 251 -rv~~~~~D~~~--~-----~p~~--D~i~~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~ 318 (370)
.++++.+|+.+ + .+.+ |+|++..+||+++++ +...+|++++++|||||+|++.+..... .
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~--------~ 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEES--------W 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCC--------E
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcc--------e
Confidence 03456668876 2 2232 999999999985543 6689999999999999999998654321 0
Q ss_pred hhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 319 IVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 319 ~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.. ..+. ......++.++|.++|+++||+++++...
T Consensus 222 ~~-~~~~-----~~~~~~~~~~~l~~~l~~aGf~~~~~~~~ 256 (289)
T 2g72_A 222 YL-AGEA-----RLTVVPVSEEEVREALVRSGYKVRDLRTY 256 (289)
T ss_dssp EE-ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred EE-cCCe-----eeeeccCCHHHHHHHHHHcCCeEEEeeEe
Confidence 00 0000 00123468999999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.3e-13 Score=113.41 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=98.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC---CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---RG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---~~ 266 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ++++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4455555 66788999999999999999999999999999998 8888877642 579999999977433 23
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++...++ +...+|+++.++|+|||++++...... +.+++.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------------------------~~~~~~~~l 155 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD-----------------------------TLTKAVEFL 155 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH-----------------------------HHHHHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc-----------------------------cHHHHHHHH
Confidence 9999988876 345899999999999999999654210 256788899
Q ss_pred HhCCCCcceE
Q 017495 347 KNSGFSGLEI 356 (370)
Q Consensus 347 ~~aGf~~v~~ 356 (370)
+++|| .+++
T Consensus 156 ~~~g~-~~~~ 164 (204)
T 3e05_A 156 EDHGY-MVEV 164 (204)
T ss_dssp HHTTC-EEEE
T ss_pred HHCCC-ceeE
Confidence 99998 4443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=118.58 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=108.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~ 266 (370)
+..++..+. .+..+|||||||+|..+..+++.+|+.+++++|. +.+++.++++ .+++++.+|+.+..+. .
T Consensus 99 ~~~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~ 176 (276)
T 2b3t_A 99 VEQALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ 176 (276)
T ss_dssp HHHHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred HHHHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCC
Confidence 334444443 3567999999999999999999999999999998 8888876643 4799999999885533 3
Q ss_pred -CEEEec-------------ccccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhh
Q 017495 267 -DAIFLK-------------WMLHGWTD----------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFE 322 (370)
Q Consensus 267 -D~i~~~-------------~vLh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~ 322 (370)
|+|+++ .++++.+. +....+++.+.+.|+|||++++...
T Consensus 177 fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------- 239 (276)
T 2b3t_A 177 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------- 239 (276)
T ss_dssp EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------
T ss_pred ccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------
Confidence 999997 35554432 3457899999999999999998421
Q ss_pred hhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC-CCeeEEEEeC
Q 017495 323 QDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA-YNSWVMEFHK 370 (370)
Q Consensus 323 ~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~-~~~~~~e~~k 370 (370)
..+.+++.++++++||+.+++.... +...++.++|
T Consensus 240 -------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 -------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp -------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred -------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 0136789999999999998887653 4445665543
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=114.87 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=100.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC----CCCCCCeEEeccCCCC-----CCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA----PSFPGVEHVGGDMFEN-----VPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~D~~~~-----~p~~-D~i~~~~ 273 (370)
+.+..+|||||||+|.++..+++.++..+++++|. +.+++.+ +...++.++.+|+..+ .+.. |+|+
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~--- 148 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY--- 148 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence 55778999999999999999999988789999998 7777543 3346899999998761 2233 9988
Q ss_pred cccCCChh-HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 274 MLHGWTDE-HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 274 vLh~~~d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
|+++++ ....+|+++.+.|+|||++++. ........... .. ....+++. +|+++||+
T Consensus 149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~---------~~---------~~~~~~l~-~l~~~Gf~ 206 (230)
T 1fbn_A 149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKD---------PK---------EIFKEQKE-ILEAGGFK 206 (230)
T ss_dssp --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSC---------HH---------HHHHHHHH-HHHHHTEE
T ss_pred --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCC---------HH---------HhhHHHHH-HHHHCCCE
Confidence 454443 3467799999999999999997 22111100000 00 01236787 89999999
Q ss_pred cceEEecCCC---eeEEEEeC
Q 017495 353 GLEIVCCAYN---SWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~---~~~~e~~k 370 (370)
.+++.+.... +.++.+.|
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 207 IVDEVDIEPFEKDHVMFVGIW 227 (230)
T ss_dssp EEEEEECTTTSTTEEEEEEEE
T ss_pred EEEEEccCCCccceEEEEEEe
Confidence 9998877543 66666553
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-13 Score=118.94 Aligned_cols=142 Identities=11% Similarity=0.065 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh----CCC------CCCCeEEeccCCC-CCCCC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN----APS------FPGVEHVGGDMFE-NVPRG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~----a~~------~~rv~~~~~D~~~-~~p~~-D~i~~ 271 (370)
..+..+|||||||+|.++..+++.+|+.+++++|+ +.+++. +++ .++++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45678999999999999999999999999999998 775553 222 2479999999988 55533 66552
Q ss_pred c---ccc--cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 272 K---WML--HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 272 ~---~vL--h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
. ..+ ||++++ ..+|++++++|||||++++......-.... ....+ . .........+++.+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~------~~~~~---~--~~~~~~~~~~~l~~~l 171 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPSV------PEVGE---H--PEPTPDSADEWLAPRY 171 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTBC------GGGTT---C--CCCCHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEeccccccccc------ccccc---C--CccchHHHHHHHHHHH
Confidence 2 222 233333 688999999999999999944322111000 00000 0 0011122345688899
Q ss_pred HhCCCCcceEEec
Q 017495 347 KNSGFSGLEIVCC 359 (370)
Q Consensus 347 ~~aGf~~v~~~~~ 359 (370)
+++||++.++...
T Consensus 172 ~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 172 AEAGWKLADCRYL 184 (218)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHcCCCceeeecc
Confidence 9999999887665
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.6e-13 Score=125.07 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=91.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~~~D 258 (370)
+..++..+. ..+..+|||||||+|..+..++..++..+++++|+ +.+++.+++ ..+|+|+.+|
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 456666666 77889999999999999999998887777999998 766665542 2579999999
Q ss_pred CCC-CCC----CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC
Q 017495 259 MFE-NVP----RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP 311 (370)
Q Consensus 259 ~~~-~~p----~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~ 311 (370)
+.+ +++ ..|+|+++.+++ + ++....|+++++.|||||+|++.|.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 998 543 359999987764 2 4567888999999999999999999988754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=111.23 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=109.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C--CCeEEeccCCCCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P--GVEHVGGDMFENVPR- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~--rv~~~~~D~~~~~p~- 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. . +++++.+|+.+..+.
T Consensus 42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 118 (194)
T 1dus_A 42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR 118 (194)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence 34555555 567789999999999999999987 779999998 8887766542 2 499999999885544
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++...+|+ ..+....++++++++|+|||++++....... ..++.+
T Consensus 119 ~~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-----------------------------~~~~~~ 168 (194)
T 1dus_A 119 KYNKIITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQTKQG-----------------------------AKSLAK 168 (194)
T ss_dssp CEEEEEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEESTHH-----------------------------HHHHHH
T ss_pred CceEEEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECCCCC-----------------------------hHHHHH
Confidence 3 99999888875 3456779999999999999999997763211 235677
Q ss_pred HHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 345 LAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
.+++. |..+++.....+..++.+.|
T Consensus 169 ~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 169 YMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHH-hcceEEEecCCcEEEEEEee
Confidence 77777 77778877777888887776
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-13 Score=118.39 Aligned_cols=138 Identities=17% Similarity=0.055 Sum_probs=89.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC----
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP---- 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p---- 264 (370)
...++..+....+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.+++. .+++++.+|+.++.+
T Consensus 18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~ 97 (215)
T 4dzr_A 18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAE 97 (215)
T ss_dssp HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhh
Confidence 344555554236778999999999999999999999999999998 8888888764 168889999877433
Q ss_pred --CC-CEEEecccc------cCCChhHH------------------HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccc
Q 017495 265 --RG-DAIFLKWML------HGWTDEHC------------------LKLLKNCWEALPENGKVIIVESILPLVPENQASS 317 (370)
Q Consensus 265 --~~-D~i~~~~vL------h~~~d~~~------------------~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~ 317 (370)
.. |+|++...+ ++++++.. ..++++++++|+|||++++++...
T Consensus 98 ~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------- 167 (215)
T 4dzr_A 98 RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH---------- 167 (215)
T ss_dssp TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT----------
T ss_pred ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC----------
Confidence 23 999995333 33333222 688999999999999966654321
Q ss_pred hhhhhhhhHHhhhcCCCcccCHHHHHHHHH--hCCCCcceEEecCC
Q 017495 318 HIVFEQDLFMLAQTTGGRERSKKEYEALAK--NSGFSGLEIVCCAY 361 (370)
Q Consensus 318 ~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~--~aGf~~v~~~~~~~ 361 (370)
...+++.++++ ++||..+++.+...
T Consensus 168 -------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~ 194 (215)
T 4dzr_A 168 -------------------NQADEVARLFAPWRERGFRVRKVKDLR 194 (215)
T ss_dssp -------------------SCHHHHHHHTGGGGGGTEECCEEECTT
T ss_pred -------------------ccHHHHHHHHHHhhcCCceEEEEEecC
Confidence 12456788888 89999888877643
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=115.88 Aligned_cols=128 Identities=15% Similarity=0.054 Sum_probs=102.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++ .+..+++++|. +.+++.+++. .++++..+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 4568999999999999999876 57779999998 8888777642 24999999998754444 99999887764
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
...++++++++|+|||++++.+.... +.+++.++++++||+.+++.
T Consensus 138 -----~~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNEDGQVIFSGIDYL-----------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp -----HHHHGGGSGGGEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCCEEEEEecCcc-----------------------------cHHHHHHHHHHcCCceEEee
Confidence 46889999999999999999665321 25678999999999999988
Q ss_pred ecCCCeeEEEE
Q 017495 358 CCAYNSWVMEF 368 (370)
Q Consensus 358 ~~~~~~~~~e~ 368 (370)
....-.+++.-
T Consensus 184 ~~~~w~~~~~~ 194 (205)
T 3grz_A 184 RAGRWIGLAIS 194 (205)
T ss_dssp EETTEEEEEEE
T ss_pred ccCCEEEEEEe
Confidence 77655555543
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5e-14 Score=124.45 Aligned_cols=133 Identities=11% Similarity=0.034 Sum_probs=91.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC---CCCCC--CEEEe---
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE---NVPRG--DAIFL--- 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~---~~p~~--D~i~~--- 271 (370)
.+..+|||||||+|..+..+++..|. +++++|+ |.+++.+++. .+++++.+|... +.+.. |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 46789999999999999999887664 7899998 9999887642 457888888654 34443 77754
Q ss_pred --cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 272 --KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 272 --~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
...++|++ +...++++++++|||||+|++.+....... ....++ .......+.+...|.++
T Consensus 138 ~~~~~~~~~~--~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~-------~~~~~~--------~~~~~~~~~~~~~L~ea 200 (236)
T 3orh_A 138 PLSEETWHTH--QFNFIKNHAFRLLKPGGVLTYCNLTSWGEL-------MKSKYS--------DITIMFEETQVPALLEA 200 (236)
T ss_dssp CCBGGGTTTH--HHHHHHHTHHHHEEEEEEEEECCHHHHHHH-------TTTTCS--------CHHHHHHHHTHHHHHHH
T ss_pred ecccchhhhc--chhhhhhhhhheeCCCCEEEEEecCCchhh-------hhhhhh--------hhhhhhHHHHHHHHHHc
Confidence 55566655 447899999999999999998654321100 000000 00111245677888999
Q ss_pred CCCcceE
Q 017495 350 GFSGLEI 356 (370)
Q Consensus 350 Gf~~v~~ 356 (370)
||+++.+
T Consensus 201 GF~~~~i 207 (236)
T 3orh_A 201 GFRRENI 207 (236)
T ss_dssp TCCGGGE
T ss_pred CCeEEEE
Confidence 9998765
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=7.5e-13 Score=115.92 Aligned_cols=145 Identities=16% Similarity=0.066 Sum_probs=91.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhC---CCC------CCCeEEeccCCCCCCC--CCEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANA---PSF------PGVEHVGGDMFENVPR--GDAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a---~~~------~rv~~~~~D~~~~~p~--~D~i~~~ 272 (370)
.+..+|||||||+|.++..++++.|+.+++++|+ +.+++.+ ++. .++.++.+|+.+. |. .|+|.+.
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i 101 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI 101 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence 4567999999999999999998889999999997 3444433 432 4689999998763 32 2655555
Q ss_pred ccccCCChhH------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 273 WMLHGWTDEH------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 273 ~vLh~~~d~~------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
.+.+.|+... ...+|++++++|||||++++........ .... ....... . ........+++.+++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~----~~~~~~~---~-~~~~~~~~~el~~~l 172 (225)
T 3p2e_A 102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAE----IKKRGLP---L-LSKAYFLSEQYKAEL 172 (225)
T ss_dssp EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------CCHHHHHSHHHHHHH
T ss_pred EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhch----hhhcCCC---C-CChhhcchHHHHHHH
Confidence 4444343211 1368999999999999999954333221 0000 0000000 0 000111223599999
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
+++||+++.+...+
T Consensus 173 ~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 173 SNSGFRIDDVKELD 186 (225)
T ss_dssp HHHTCEEEEEEEEC
T ss_pred HHcCCCeeeeeecC
Confidence 99999988876653
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.6e-13 Score=110.47 Aligned_cols=101 Identities=18% Similarity=0.236 Sum_probs=81.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC---C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP---R 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p---~ 265 (370)
.++..+. ..+..+|||||||+|.++..+++.+|..+++++|. +.+++.+++. +++ ++.+|..+.++ .
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 3444454 66778999999999999999999999999999998 8788776532 267 88888876433 2
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++...+|+ ..+++++.+.|+|||++++.+.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCCCCEEEEEee
Confidence 399999999987 4789999999999999998664
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-12 Score=128.18 Aligned_cols=108 Identities=18% Similarity=0.175 Sum_probs=88.8
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC------------CCCCeEEeccCCC-C
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS------------FPGVEHVGGDMFE-N 262 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------------~~rv~~~~~D~~~-~ 262 (370)
++..+. ..+..+|||||||+|.++..+++.. |..+++++|+ +.+++.+++ ..+++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 334343 3467899999999999999999988 5679999998 888887754 2469999999988 5
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.+.+ |+|++..++||++++....++++++++|+|| .++|..+..
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 5433 9999999999999988889999999999999 777766543
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-12 Score=117.25 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=76.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C--------CCeEEeccCCC---------CCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P--------GVEHVGGDMFE---------NVP 264 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~--------rv~~~~~D~~~---------~~p 264 (370)
+..+|||||||+|..+..++.. ...+++++|+ +.+++.|+++ . ++++...|+.. +.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 4679999999999877666553 3468999998 8999888753 1 15677888732 234
Q ss_pred CC--CEEEecccccCC-ChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 265 RG--DAIFLKWMLHGW-TDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 265 ~~--D~i~~~~vLh~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.+ |+|++..++|+. ++++...+|++++++|||||++++..+.
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 33 999999999974 4445679999999999999999987763
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-12 Score=114.77 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=82.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CC------CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NV------PRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~------p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..++++ +.+++++|+ +.+++.++++..-.++..++.+ +. +..
T Consensus 34 ~~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~ 110 (261)
T 3iv6_A 34 RENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGH 110 (261)
T ss_dssp HHHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTC
T ss_pred HHHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCC
Confidence 345555555 677889999999999999999986 568999998 8888877653111123333332 11 223
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++||++.++...+|++++++| |||+|++....
T Consensus 111 fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~ 150 (261)
T 3iv6_A 111 FDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL 150 (261)
T ss_dssp CSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred ccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence 9999999999999888899999999999 99999987543
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.2e-12 Score=118.67 Aligned_cols=100 Identities=18% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------------CCCeEEeccCCC-C----CC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------------PGVEHVGGDMFE-N----VP-- 264 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------------~rv~~~~~D~~~-~----~p-- 264 (370)
.+..+|||||||+|..+..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ + ++
T Consensus 33 ~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 33 KRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp --CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 36789999999999999999874 6779999998 8887766532 268999999987 3 32
Q ss_pred C-C-CEEEecccccCC--ChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 265 R-G-DAIFLKWMLHGW--TDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 265 ~-~-D~i~~~~vLh~~--~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. . |+|++..++|+. +.++...+|++++++|+|||.+++..+.
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 2 3 999999999986 4456779999999999999999998763
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.4e-13 Score=117.67 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=77.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC---CCCCC--CEEEe-cc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE---NVPRG--DAIFL-KW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~---~~p~~--D~i~~-~~ 273 (370)
.+..+|||||||+|.++..+++..+ .+++++|+ +.+++.+++. .+++++.+|+.+ +++.+ |+|++ .+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 4568999999999999999976433 48999998 8888776542 468999999875 35543 99998 55
Q ss_pred c--ccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 274 M--LHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 274 v--Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. .+++.......+|++++++|||||+|++.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 34444445568899999999999999997764
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=117.95 Aligned_cols=96 Identities=19% Similarity=0.154 Sum_probs=80.5
Q ss_pred CCCeEEEEcCcccH----HHHHHHhhCC----CCeEEEeeh-hhHHHhCCCC----------------------------
Q 017495 207 GLKVLVDVGGGIGV----TLGMITSRYP----CIKGISFDL-PHVLANAPSF---------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~~---------------------------- 249 (370)
+..+|+|+|||+|. +++.|++.++ +.++++.|+ +.+++.|++.
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35799999999998 5666777655 468999998 8888876531
Q ss_pred ---------CCCeEEeccCCC-CCC--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 250 ---------PGVEHVGGDMFE-NVP--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 250 ---------~rv~~~~~D~~~-~~p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
.+|.|..+|+.+ +++ .. |+|+|.++|++++++...+++++++++|+|||+|++
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 258999999998 565 23 999999999999988888999999999999999998
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-12 Score=110.98 Aligned_cols=140 Identities=13% Similarity=0.104 Sum_probs=97.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCC----CCCCCeEEeccCCCC--CC---CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAP----SFPGVEHVGGDMFEN--VP---RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~D~~~~--~p---~~-D~i~~~ 272 (370)
+++..+|||+|||+|.++..+++. .|+-+++++|+ +.+++.++ +..++..+.+|...+ .+ .. |+|++.
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d 154 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGLYAD 154 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEEEEe
Confidence 678899999999999999999988 58889999998 88776543 346789999988762 12 22 887753
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+++. ++...+++++++.|||||+++|.......+ .. . ... ...++-.+.|+++||+
T Consensus 155 --~~~~--~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d--------------~~----~-p~~-~~~~~ev~~L~~~GF~ 210 (233)
T 4df3_A 155 --VAQP--EQAAIVVRNARFFLRDGGYMLMAIKARSID--------------VT----T-EPS-EVYKREIKTLMDGGLE 210 (233)
T ss_dssp --CCCT--THHHHHHHHHHHHEEEEEEEEEEEECCHHH--------------HH----T-CCC-HHHHHHHHHHHHTTCC
T ss_pred --ccCC--hhHHHHHHHHHHhccCCCEEEEEEecccCC--------------CC----C-ChH-HHHHHHHHHHHHCCCE
Confidence 3332 345689999999999999999975432211 00 0 000 0123345678899999
Q ss_pred cceEEecC---CCeeEEEE
Q 017495 353 GLEIVCCA---YNSWVMEF 368 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~ 368 (370)
.++...+. ..+.++.+
T Consensus 211 l~e~i~L~pf~~~H~lv~~ 229 (233)
T 4df3_A 211 IKDVVHLDPFDRDHAMIYA 229 (233)
T ss_dssp EEEEEECTTTSTTEEEEEE
T ss_pred EEEEEccCCCCCceEEEEE
Confidence 99887764 34555443
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=106.74 Aligned_cols=137 Identities=13% Similarity=0.079 Sum_probs=94.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH----HHhCCCCCCCeEEeccCCCC-----CCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV----LANAPSFPGVEHVGGDMFEN-----VPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~----~~~a~~~~rv~~~~~D~~~~-----~p~~-D~i~~~~ 273 (370)
..+..+|||||||+|..+..+++..+..+++++|+ +.+ .+.++...++.++.+|+..+ .++. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 45678999999999999999999988778999998 654 34444446788888998763 2333 999986
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH----HHHHhC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE----ALAKNS 349 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~----~ll~~a 349 (370)
+.+ .++...+|++++++|||||+|++.-...+. + . ..+.+++. +.++++
T Consensus 134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~~~~~~--------------~---------~-~~~~~~~~~~~~~~l~~~ 186 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKEKGEVVIMVKARSI--------------D---------S-TAEPEEVFKSVLKEMEGD 186 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEEEEEEEEEEEHHHH--------------C---------T-TSCHHHHHHHHHHHHHTT
T ss_pred ccC---hhHHHHHHHHHHHHhCCCCEEEEEEecCCc--------------c---------c-cCCHHHHHHHHHHHHHhh
Confidence 332 234456799999999999999997322100 0 0 01223321 237888
Q ss_pred CCCcceEEecC---CCeeEEEEeC
Q 017495 350 GFSGLEIVCCA---YNSWVMEFHK 370 (370)
Q Consensus 350 Gf~~v~~~~~~---~~~~~~e~~k 370 (370)
|++++..... ..+.++.++|
T Consensus 187 -f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 187 -FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp -SEEEEEEECTTTCTTEEEEEEEE
T ss_pred -cEEeeeecCCCCCCCcEEEEEEc
Confidence 9999988773 3556666553
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=110.56 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~ 277 (370)
.+..+|||||||+|.++..+++..+. +++++|+ +.+++.+++. .+++++.+|+.+ +.+.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 56789999999999999999998654 8999998 8877766542 579999999987 55543 99999998877
Q ss_pred CC-------------hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WT-------------DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~-------------d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+. .++...+|++++++|+|||++++.++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 55 3456799999999999999999988654
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-12 Score=106.87 Aligned_cols=133 Identities=15% Similarity=0.121 Sum_probs=90.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~~p~-~-D~i~~~~ 273 (370)
.++..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++. ++++++..|+.. ..+. . |+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 456789999999999999999987 789999998 8888877642 578999877655 1333 3 9998763
Q ss_pred -cccCC------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 274 -MLHGW------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 274 -vLh~~------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
.+++- ..+....+|+++.++|||||++++.......... .......+|.+.+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------------------~~~~~~~~~~~~l 156 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGD---------------------MEKDAVLEYVIGL 156 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------C---------------------HHHHHHHHHHHHS
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCH---------------------HHHHHHHHHHHhC
Confidence 33220 2245678899999999999999997764322100 0001134556666
Q ss_pred HhCCCCcceEEecC
Q 017495 347 KNSGFSGLEIVCCA 360 (370)
Q Consensus 347 ~~aGf~~v~~~~~~ 360 (370)
...+|.+.......
T Consensus 157 ~~~~~~~~~~~~~~ 170 (185)
T 3mti_A 157 DQRVFTAMLYQPLN 170 (185)
T ss_dssp CTTTEEEEEEEESS
T ss_pred CCceEEEEEehhhc
Confidence 66788888777663
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=117.94 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=93.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~- 266 (370)
.++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.++.+..
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4445454 667889999999999999999998 78899999998 887776543 147999999998865543
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++ ++++. ..+|+++.++|+|||++++...... ..+++.++
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~-----------------------------~~~~~~~~ 223 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLPNFD-----------------------------QSEKTVLS 223 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEESSHH-----------------------------HHHHHHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHHH
Confidence 99997 34443 4889999999999999999764210 13456677
Q ss_pred HHhCCCCcceEEe
Q 017495 346 AKNSGFSGLEIVC 358 (370)
Q Consensus 346 l~~aGf~~v~~~~ 358 (370)
++++||+.+++..
T Consensus 224 l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 224 LSASGMHHLETVE 236 (275)
T ss_dssp SGGGTEEEEEEEE
T ss_pred HHHCCCeEEEEEE
Confidence 7888888877665
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.6e-12 Score=106.79 Aligned_cols=120 Identities=21% Similarity=0.219 Sum_probs=92.8
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR--G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~--~ 266 (370)
.++..+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.+++. .++++..+|+.+..+. .
T Consensus 24 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 100 (192)
T 1l3i_A 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (192)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence 3444444 6677899999999999999999877 78999998 8777766542 5789999998763332 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++..++++ ...+|+.+.++|+|||++++..... .+..++.++
T Consensus 101 ~D~v~~~~~~~~-----~~~~l~~~~~~l~~gG~l~~~~~~~-----------------------------~~~~~~~~~ 146 (192)
T 1l3i_A 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAILL-----------------------------ETKFEAMEC 146 (192)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEECBH-----------------------------HHHHHHHHH
T ss_pred CCEEEECCchHH-----HHHHHHHHHHhcCCCcEEEEEecCc-----------------------------chHHHHHHH
Confidence 99999888764 3688999999999999999865421 024568889
Q ss_pred HHhCCCCc
Q 017495 346 AKNSGFSG 353 (370)
Q Consensus 346 l~~aGf~~ 353 (370)
+++.||.+
T Consensus 147 l~~~g~~~ 154 (192)
T 1l3i_A 147 LRDLGFDV 154 (192)
T ss_dssp HHHTTCCC
T ss_pred HHHCCCce
Confidence 99999943
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.29 E-value=7.8e-12 Score=111.42 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=99.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+..+..
T Consensus 83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (255)
T 3mb5_A 83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE 161 (255)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence 34555555 677889999999999999999999 78999999998 8888877642 45999999998866653
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++ ++++. ..+|+++.++|+|||++++..+... ..+++.+
T Consensus 162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~~ 205 (255)
T 3mb5_A 162 NVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN-----------------------------QVMRLHE 205 (255)
T ss_dssp SEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred CcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH-----------------------------HHHHHHH
Confidence 99987 34443 4789999999999999999654211 1346778
Q ss_pred HHHhCC--CCcceEEec
Q 017495 345 LAKNSG--FSGLEIVCC 359 (370)
Q Consensus 345 ll~~aG--f~~v~~~~~ 359 (370)
+++++| |..+++...
T Consensus 206 ~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 206 KLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHTGGGBSCCEEECC
T ss_pred HHHHcCCCccccEEEEE
Confidence 889999 988877654
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.29 E-value=2.6e-11 Score=106.14 Aligned_cols=141 Identities=16% Similarity=0.092 Sum_probs=97.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHh----CCCCCCCeEEeccCCCC-----CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLAN----APSFPGVEHVGGDMFEN-----VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~----a~~~~rv~~~~~D~~~~-----~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|.++..+++.+ |..+++++|. +.+++. ++...+++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5567899999999999999999885 6679999998 754443 34446899999999872 2233 999975
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.. .......++++++++|+|||++++. .......... .......+++.++ +++ |+
T Consensus 151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~------------------~~~~~~~~~l~~l-~~~-f~ 205 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVTK------------------EPEQVFREVEREL-SEY-FE 205 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTTS------------------CHHHHHHHHHHHH-HTT-SE
T ss_pred CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCCC------------------ChhhhhHHHHHHH-Hhh-ce
Confidence 44 2233446699999999999999998 2211110000 0001235677777 777 99
Q ss_pred cceEEecCCC---eeEEEEeC
Q 017495 353 GLEIVCCAYN---SWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~~~---~~~~e~~k 370 (370)
+++....... +.++.++|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred eeeEeccCcccCCCEEEEEEe
Confidence 9988877544 56666554
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=107.16 Aligned_cols=98 Identities=23% Similarity=0.313 Sum_probs=77.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~--D~i~~~~v 274 (370)
+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 457999999999999999999999999999998 8888776542 579999999987 3 4443 99998765
Q ss_pred ccCCChh------HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDE------HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~------~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+..... ....+|+.+.++|+|||.|++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 4321110 12479999999999999999854
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8e-12 Score=111.49 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---C--CCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---P--GVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~--rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ . .+++..+|+.+..+. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 4678999999999999999988655 9999998 8888776642 1 288999998764433 3 9999865443
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
....+++.+.++|+|||++++.+.... +.+++.++++++||+++++.
T Consensus 196 ----~~~~~l~~~~~~LkpgG~lils~~~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ----LHAALAPRYREALVPGGRALLTGILKD-----------------------------RAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ----HHHHHHHHHHHHEEEEEEEEEEEEEGG-----------------------------GHHHHHHHHHHTTCEEEEEE
T ss_pred ----HHHHHHHHHHHHcCCCCEEEEEeeccC-----------------------------CHHHHHHHHHHCCCEEEEEe
Confidence 356899999999999999999765321 25689999999999999887
Q ss_pred ecCC
Q 017495 358 CCAY 361 (370)
Q Consensus 358 ~~~~ 361 (370)
....
T Consensus 243 ~~~~ 246 (254)
T 2nxc_A 243 AEGE 246 (254)
T ss_dssp EETT
T ss_pred ccCC
Confidence 7643
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=107.90 Aligned_cols=126 Identities=19% Similarity=0.160 Sum_probs=93.7
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC--CCCCC--CEEEecc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE--NVPRG--DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~--~~p~~--D~i~~~~ 273 (370)
.++..+|||+||| +|.++..+++.. ..+++++|. +.+++.+++. .+++++.+|+.. +.+.. |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 4577899999999 999999999986 789999998 8888877642 269999999643 44433 9999886
Q ss_pred cccCCChhH-----------------HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc
Q 017495 274 MLHGWTDEH-----------------CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE 336 (370)
Q Consensus 274 vLh~~~d~~-----------------~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 336 (370)
.+++.++.. ...+|+.+.+.|+|||++++......
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------------- 183 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE---------------------------- 183 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH----------------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH----------------------------
Confidence 665543321 36899999999999999999633210
Q ss_pred cCHHHHHHHHHhCCCCcceEEec
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...+++.++++++||++..+...
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~~ 206 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKFK 206 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEC
T ss_pred hHHHHHHHHHHHcCCceEEEEec
Confidence 12467889999999977666544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-12 Score=112.72 Aligned_cols=114 Identities=12% Similarity=0.094 Sum_probs=88.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC--CCC-CC--CEEEecccccCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE--NVP-RG--DAIFLKWMLHGW 278 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~--~~p-~~--D~i~~~~vLh~~ 278 (370)
++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++ ..+++++.+|+.+ +.+ .. |+|++..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 46789999999999999999997 579999998 888887765 3679999999965 444 33 9999871
Q ss_pred ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEe
Q 017495 279 TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVC 358 (370)
Q Consensus 279 ~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 358 (370)
+...+|++++++|+|||+|+.. +...+.+++.++++++||+.+.+..
T Consensus 120 ---~~~~~l~~~~~~LkpgG~l~~~------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~ 166 (226)
T 3m33_A 120 ---GPTSVILRLPELAAPDAHFLYV------------------------------GPRLNVPEVPERLAAVGWDIVAEDH 166 (226)
T ss_dssp ---CCSGGGGGHHHHEEEEEEEEEE------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred ---CHHHHHHHHHHHcCCCcEEEEe------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence 2247899999999999999910 0012345788899999998877654
Q ss_pred c
Q 017495 359 C 359 (370)
Q Consensus 359 ~ 359 (370)
.
T Consensus 167 ~ 167 (226)
T 3m33_A 167 V 167 (226)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-11 Score=104.81 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=92.8
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCCCCC---CC
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFENVP---RG 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~~~p---~~ 266 (370)
++..+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. . +++++.+|+.+..+ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 444455 667789999999999999999987 789999998 8888876642 3 79999999987322 34
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALA 346 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll 346 (370)
|+|++...+ + .. +++.+.++|+|||+|++..... .+..++.+++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~LkpgG~lv~~~~~~-----------------------------~~~~~~~~~l 167 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAPGTRIVANAVTL-----------------------------ESETLLTQLH 167 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCTTCEEEEEECSH-----------------------------HHHHHHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCCCcEEEEEecCc-----------------------------ccHHHHHHHH
Confidence 999987744 1 23 8999999999999999855421 0245677888
Q ss_pred HhCCCCcceEE
Q 017495 347 KNSGFSGLEIV 357 (370)
Q Consensus 347 ~~aGf~~v~~~ 357 (370)
++.||++.++.
T Consensus 168 ~~~g~~i~~i~ 178 (204)
T 3njr_A 168 ARHGGQLLRID 178 (204)
T ss_dssp HHHCSEEEEEE
T ss_pred HhCCCcEEEEE
Confidence 88998877653
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.4e-12 Score=105.01 Aligned_cols=97 Identities=15% Similarity=0.052 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC-CC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP-RG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p-~~-D~i~~~~vLh~ 277 (370)
.++.+|||+|||+|.++..++...|+.+++++|. +.+++.++++ ...++...|..+..| .. |+|++..+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 4688999999999999999999999999999998 9999887753 112344467665333 33 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+ + +....+.++++.|+|||.++-.+
T Consensus 128 L-~-~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 128 L-K-QQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp H-H-HTTCCHHHHHHTCEEEEEEEEEE
T ss_pred h-h-hhHHHHHHHHHHhCCCCEEEEeC
Confidence 9 3 44566779999999999888877
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.8e-12 Score=107.69 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=80.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C-CC-CC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N-VP-RG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~-~p-~~-D~i~~ 271 (370)
.++..+|||+|||+|.++..+++.+ |..+++++|. +.+++.+++. ++++++.+|+.+ + .. .. |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4567899999999999999999986 6779999998 8888877643 579999999876 2 33 33 99998
Q ss_pred ccccc-------CCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 KWMLH-------GWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh-------~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
...+. ....++...+|+++.++|+|||++++.....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 76541 1122345679999999999999999987643
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.8e-12 Score=109.97 Aligned_cols=141 Identities=12% Similarity=0.007 Sum_probs=95.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhH----HHhCCCCCCCeEEeccCCCC--CC---CC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHV----LANAPSFPGVEHVGGDMFEN--VP---RG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~----~~~a~~~~rv~~~~~D~~~~--~p---~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++.+ |..+++++|+ +.+ .+.++...+++++.+|+.+. .+ .. |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999998 553 44444447899999999872 22 23 999985
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.. ..+....++++++++|+|||++++.-......... .... +-..+ .++|+++||+
T Consensus 155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~---------~~~~~-~~~l~~~Gf~ 210 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEA---------VFASE-VKKMQQENMK 210 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHH---------HHHHH-HHTTGGGTEE
T ss_pred CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHH---------HHHHH-HHHHHHCCCc
Confidence 44 23345677999999999999999943211000000 0000 00123 5889999999
Q ss_pred cceEEecCC---CeeEEEEe
Q 017495 353 GLEIVCCAY---NSWVMEFH 369 (370)
Q Consensus 353 ~v~~~~~~~---~~~~~e~~ 369 (370)
+++...... .+.++.++
T Consensus 211 ~~~~~~~~~~~~~~~~v~~~ 230 (233)
T 2ipx_A 211 PQEQLTLEPYERDHAVVVGV 230 (233)
T ss_dssp EEEEEECTTTSSSEEEEEEE
T ss_pred eEEEEecCCccCCcEEEEEE
Confidence 998776543 34544443
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=109.76 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=78.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChhH
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDEH 282 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~ 282 (370)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++...-.++.+|+.+ +.+.+ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 6689999999999999999986 568999998 8888877643222388999887 65543 999998877666433
Q ss_pred HHHHHHHHHHhCCCCcEEEEEeec
Q 017495 283 CLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 283 ~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
...+|++++++|+|||++++..+.
T Consensus 131 ~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 131 KDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred HHHHHHHHHHHcCCCeEEEEEeCC
Confidence 579999999999999999997764
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=112.86 Aligned_cols=129 Identities=14% Similarity=0.130 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC-CC--CC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE-NV--PR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~-~~--p~-~-D~i 269 (370)
+++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++ ..+++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 4568999999999999999998877889999998 888876653 2579999999876 21 33 3 999
Q ss_pred EecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 270 FLKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 270 ~~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
++....+..+.... ..++++++++|+|||+|++..... +.+ .....++.+.++
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~-----------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD-----------LELIEKMSRFIR 228 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC-----------HHHHHHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc-----------hHHHHHHHHHHH
Confidence 99777665543332 589999999999999999864211 000 113567889999
Q ss_pred hCCCCcceEEec
Q 017495 348 NSGFSGLEIVCC 359 (370)
Q Consensus 348 ~aGf~~v~~~~~ 359 (370)
++||..+.+...
T Consensus 229 ~~GF~~v~~~~~ 240 (304)
T 3bwc_A 229 ETGFASVQYALM 240 (304)
T ss_dssp HHTCSEEEEEEC
T ss_pred hCCCCcEEEEEe
Confidence 999998887654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.23 E-value=7.5e-11 Score=103.11 Aligned_cols=141 Identities=16% Similarity=0.144 Sum_probs=94.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHH----HhCCCCCCCeEEeccCCCCC-----CCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVL----ANAPSFPGVEHVGGDMFENV-----PRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~----~~a~~~~rv~~~~~D~~~~~-----p~~-D~i~~~ 272 (370)
+.+..+|||+|||+|.++..+++. .|..+++++|+ +.++ +.+++..++.++.+|+..+. .+. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567899999999999999999987 46789999998 7553 33444468999999987631 223 999887
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
... + ++...+++.+++.|||||+|++....... |.. ....+ ..++..+.|+++||+
T Consensus 154 ~a~---~-~~~~il~~~~~~~LkpGG~lvisik~~~~--------------d~t-----~~~~e-~~~~~~~~L~~~gf~ 209 (232)
T 3id6_C 154 IAQ---P-DQTDIAIYNAKFFLKVNGDMLLVIKARSI--------------DVT-----KDPKE-IYKTEVEKLENSNFE 209 (232)
T ss_dssp CCC---T-THHHHHHHHHHHHEEEEEEEEEEEC--------------------------CCSSS-STTHHHHHHHHTTEE
T ss_pred CCC---h-hHHHHHHHHHHHhCCCCeEEEEEEccCCc--------------ccC-----CCHHH-HHHHHHHHHHHCCCE
Confidence 543 2 23344556777799999999997422111 100 01111 112345677889999
Q ss_pred cceEEecC---CCeeEEEEe
Q 017495 353 GLEIVCCA---YNSWVMEFH 369 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~~ 369 (370)
+++...+. ..+.++.++
T Consensus 210 ~~~~~~l~p~~~~h~~v~~~ 229 (232)
T 3id6_C 210 TIQIINLDPYDKDHAIVLSK 229 (232)
T ss_dssp EEEEEECTTTCSSCEEEEEE
T ss_pred EEEEeccCCCcCceEEEEEE
Confidence 99988874 356666654
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.9e-11 Score=110.09 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCCCEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRGDAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~D~i~~~~vLh 276 (370)
..++.+|||||||+|.++..++.+.++.+++++|+ |.+++.|++. ++++++.+|+.+ +....|+|++....
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~~- 198 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALA- 198 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTTC-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCCc-
Confidence 67889999999999988776666778999999998 9999888753 689999999987 31123999986542
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ +..++++.++++|||||+|++.+.
T Consensus 199 --~--d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 199 --E--PKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp --S--CHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred --c--CHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 346899999999999999999763
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-12 Score=110.68 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=92.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..++...|+.+++++|. +.+++.+++. .+++++.+|+.+ +.+ .. |+|++.
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence 4668999999999999999998889999999998 8787776542 469999999876 432 33 999987
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.+ . +...+++.+.++|+|||++++....... ...+++.+.++++||+
T Consensus 149 ~~----~--~~~~~l~~~~~~LkpgG~l~~~~g~~~~---------------------------~~~~~~~~~l~~~g~~ 195 (240)
T 1xdz_A 149 AV----A--RLSVLSELCLPLVKKNGLFVALKAASAE---------------------------EELNAGKKAITTLGGE 195 (240)
T ss_dssp CC----S--CHHHHHHHHGGGEEEEEEEEEEECC-CH---------------------------HHHHHHHHHHHHTTEE
T ss_pred cc----C--CHHHHHHHHHHhcCCCCEEEEEeCCCch---------------------------HHHHHHHHHHHHcCCe
Confidence 63 2 2468999999999999999986321100 0134677889999999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
++++..
T Consensus 196 ~~~~~~ 201 (240)
T 1xdz_A 196 LENIHS 201 (240)
T ss_dssp EEEEEE
T ss_pred EeEEEE
Confidence 887765
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.3e-11 Score=103.50 Aligned_cols=109 Identities=9% Similarity=0.050 Sum_probs=83.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CC---CCC--CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NV---PRG--DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~---p~~--D~i~~~~vL 275 (370)
..+..+|||||||. +.+|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 56788999999996 12776 7787776643 359999999987 44 443 999999999
Q ss_pred cCC-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 276 HGW-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 276 h~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
||+ ++. ..+|++++++|||||+|++.++...... .....++.++|.++|+++||
T Consensus 74 ~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRPGGCLFLKEPVETAVD--------------------NNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------SSSSSCCHHHHHHHHHHTTC
T ss_pred hhcccCH--HHHHHHHHHHCCCCEEEEEEcccccccc--------------------cccccCCHHHHHHHHHHCCC
Confidence 998 654 6899999999999999999765432210 01223578999999999999
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=109.03 Aligned_cols=126 Identities=17% Similarity=0.137 Sum_probs=96.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. +++++..+|+.+ +++.
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 35555555 777889999999999999999998 67899999998 8877766532 579999999987 3664
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 343 (370)
. |+|++ ++++. ..+|+++.++|+|||++++..+... ...++.
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~-----------------------------~~~~~~ 208 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLPNIT-----------------------------QVLELV 208 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESCHH-----------------------------HHHHHH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeCCHH-----------------------------HHHHHH
Confidence 3 99987 23433 4789999999999999999774220 123566
Q ss_pred HHHHhCCCCcceEEe
Q 017495 344 ALAKNSGFSGLEIVC 358 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~ 358 (370)
+.++++||+.+++..
T Consensus 209 ~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 209 RAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHTTTTEEEEEEEE
T ss_pred HHHHHCCCceEEEEE
Confidence 677788998776554
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.7e-11 Score=105.72 Aligned_cols=124 Identities=12% Similarity=0.116 Sum_probs=93.6
Q ss_pred CC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-C--CCC-C-CEEE
Q 017495 205 FD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-N--VPR-G-DAIF 270 (370)
Q Consensus 205 ~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~--~p~-~-D~i~ 270 (370)
.+ +..+|||+|||+|.++..++++.+. +++++|+ +.+++.++++ ++++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 56 6789999999999999999998766 9999998 8888877642 479999999987 2 333 3 9999
Q ss_pred ecccccCC------------------ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 271 LKWMLHGW------------------TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 271 ~~~vLh~~------------------~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
++-.++.. .......+++.+.++|+|||+++++.. .
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHR---P----------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEEC---T-----------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEc---H-----------------------
Confidence 96433221 113346899999999999999999421 1
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
....++.+++++.||....+.+.
T Consensus 179 ----~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 ----ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp ----TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred ----HHHHHHHHHHHHCCCceEEEEEe
Confidence 02456788889999998877665
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-12 Score=117.27 Aligned_cols=145 Identities=11% Similarity=0.018 Sum_probs=95.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC----CCC----CC-CEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE----NVP----RG-DAI 269 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~----~~p----~~-D~i 269 (370)
+..+|||+|||+|.++..++.++|+.+++++|+ +.+++.++++ ++++++.+|+.+ +.+ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 467999999999999999999888899999998 8888877642 469999999543 344 23 999
Q ss_pred EecccccCCCh-------------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc
Q 017495 270 FLKWMLHGWTD-------------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE 336 (370)
Q Consensus 270 ~~~~vLh~~~d-------------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 336 (370)
++.-..|.... +....++..++++|||||.+.+++...... ........+... ..+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~--------~~~l~~~g~~~~-~~~~~ 215 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS--------LQLKKRLRWYSC-MLGKK 215 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH--------HHHGGGBSCEEE-EESST
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH--------HhcccceEEEEE-CCCCh
Confidence 99865554320 112356788999999999998876543210 000000000000 12333
Q ss_pred cCHHHHHHHHHhCCCCcceEEecC
Q 017495 337 RSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.+.+++.++|+++||+.+++....
T Consensus 216 ~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 216 CSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp TSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCceEEEEEe
Confidence 456889999999999999877764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=114.33 Aligned_cols=108 Identities=20% Similarity=0.210 Sum_probs=85.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------CCCeEEeccCCCCCCCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~D~~~~~p~~ 266 (370)
.++..++ .....+|||+|||+|.++..+++.+|..+++++|. +.+++.++++ .++++..+|+.++.+..
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 3455555 44558999999999999999999999999999998 8888877652 14788999999866643
Q ss_pred --CEEEecccccC---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHG---WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~---~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++.-.+|+ ..+.....+|+.+.+.|+|||+++++..
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 99999988885 3344556899999999999999999653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.20 E-value=7.1e-11 Score=106.47 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=94.7
Q ss_pred HHHHHhhcCCC-CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh-CCCCCCCeEEe-ccCCC----CCCC--
Q 017495 196 NKILDVYRGFD-GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN-APSFPGVEHVG-GDMFE----NVPR-- 265 (370)
Q Consensus 196 ~~l~~~~~~~~-~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~~~rv~~~~-~D~~~----~~p~-- 265 (370)
..++..+. .. +..+|||||||||.++..+++. +..+++++|. +.+++. .+...++.... .|+.. ..|.
T Consensus 74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~ 151 (291)
T 3hp7_A 74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGL 151 (291)
T ss_dssp HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCC
T ss_pred HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCC
Confidence 34555555 43 4679999999999999988886 4568999998 777766 33334443332 23221 2333
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC-CCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV-PENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
.|+|++...+|++ ..+|..++++|+|||++++.- .|.- .............+.. ...++.+++.+
T Consensus 152 fD~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~v~~ 217 (291)
T 3hp7_A 152 PSFASIDVSFISL-----NLILPALAKILVDGGQVVALV--KPQFEAGREQIGKNGIVRESS-------IHEKVLETVTA 217 (291)
T ss_dssp CSEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHHHHH
T ss_pred CCEEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcCCCCccCCHH-------HHHHHHHHHHH
Confidence 3999998888754 478999999999999999862 1110 0000000000000100 01235788999
Q ss_pred HHHhCCCCcceEEecC
Q 017495 345 LAKNSGFSGLEIVCCA 360 (370)
Q Consensus 345 ll~~aGf~~v~~~~~~ 360 (370)
+++++||++..+...+
T Consensus 218 ~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 218 FAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHTTEEEEEEEECS
T ss_pred HHHHCCCEEEEEEECC
Confidence 9999999998877754
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.7e-11 Score=100.97 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=92.4
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC--CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR--GD 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~--~D 267 (370)
.+...+. ..+..+|||+|||+|.++..+++ +..+++++|. +.+++.+++. .+++++.+|+.++.+. .|
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 4444454 56778999999999999999998 8889999998 8888776643 5799999998875443 39
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++..+ + +...+++.+++. |||++++...... +..++.++++
T Consensus 103 ~i~~~~~-~-----~~~~~l~~~~~~--~gG~l~~~~~~~~-----------------------------~~~~~~~~l~ 145 (183)
T 2yxd_A 103 KAFIGGT-K-----NIEKIIEILDKK--KINHIVANTIVLE-----------------------------NAAKIINEFE 145 (183)
T ss_dssp EEEECSC-S-----CHHHHHHHHHHT--TCCEEEEEESCHH-----------------------------HHHHHHHHHH
T ss_pred EEEECCc-c-----cHHHHHHHHhhC--CCCEEEEEecccc-----------------------------cHHHHHHHHH
Confidence 9999888 2 335789999888 9999999764210 1356788999
Q ss_pred hCCCCcceE
Q 017495 348 NSGFSGLEI 356 (370)
Q Consensus 348 ~aGf~~v~~ 356 (370)
++||.+..+
T Consensus 146 ~~g~~~~~~ 154 (183)
T 2yxd_A 146 SRGYNVDAV 154 (183)
T ss_dssp HTTCEEEEE
T ss_pred HcCCeEEEE
Confidence 999876554
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-11 Score=115.66 Aligned_cols=109 Identities=19% Similarity=0.213 Sum_probs=87.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCC-CEE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRG-DAI 269 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~-D~i 269 (370)
.++..+. .....+|||||||+|.++..+++.+|..+++++|. +.+++.+++. ..++++.+|+.+..+.. |+|
T Consensus 187 ~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~I 265 (343)
T 2pjd_A 187 LLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDMI 265 (343)
T ss_dssp HHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEEE
T ss_pred HHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeEE
Confidence 4455554 33467999999999999999999999999999998 8878776542 24678899988744444 999
Q ss_pred EecccccC---CChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 270 FLKWMLHG---WTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 270 ~~~~vLh~---~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
++...+|+ ++.+....+|++++++|+|||.++++...
T Consensus 266 v~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 266 ISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp EECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred EECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 99999986 24456789999999999999999997753
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-10 Score=99.21 Aligned_cols=107 Identities=19% Similarity=0.164 Sum_probs=79.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC--CCeEEEeehhhHHHhCCCCCCCeEEeccCCC-C---------
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP--CIKGISFDLPHVLANAPSFPGVEHVGGDMFE-N--------- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p--~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~--------- 262 (370)
+.++.+.+..+.+..+|||||||+|.++..+++.+| ..+++++|+..+ ....+++++.+|+.+ +
T Consensus 10 l~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~ 85 (201)
T 2plw_A 10 LIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINY 85 (201)
T ss_dssp HHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC-----
T ss_pred HHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhccccc
Confidence 334555554346678999999999999999999998 689999998432 123579999999987 3
Q ss_pred ----------------CCC-C-CEEEecccccCCC----hhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 ----------------VPR-G-DAIFLKWMLHGWT----DEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 ----------------~p~-~-D~i~~~~vLh~~~----d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. . |+|++...+|+.. +.. ..++|+.++++|+|||++++..+
T Consensus 86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 343 3 9999988777532 111 12489999999999999998443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=9.1e-11 Score=97.81 Aligned_cols=108 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCC-C--------CCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFE-N--------VPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~-~--------~p~ 265 (370)
..+...+....+..+|||+|||+|.++..+++.+ |+.+++++|...+++ ..++++..+|+.+ + .+.
T Consensus 11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP----IVGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC----CTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc----cCcEEEEEcccccchhhhhhhccCCC
Confidence 3455555435567899999999999999999985 778999999843432 2579999999987 4 554
Q ss_pred C--CEEEecccccCCChhH---------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 266 G--DAIFLKWMLHGWTDEH---------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~---------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
. |+|++...+|+..... ...+|+++.++|+|||.+++.....
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred CceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3 9999998888765431 1588999999999999999977643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=119.65 Aligned_cols=106 Identities=19% Similarity=0.143 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++ .+..+++++|+..+++.+++. ++|+++.+|+.+ +.++.
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445566555 45678999999999999998887 577899999984476655431 579999999988 66655
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
|+|++..++|++.+++....+..+++.|+|||++++
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 999998888888777778888999999999999985
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-11 Score=106.85 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=76.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCC----CCCC--CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFEN----VPRG--DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~----~p~~--D~i~~~~ 273 (370)
...+|||||||+|.++..+++.+|+..++++|. +.+++.+++ ..+++++.+|+.+. ++.+ |.|++.+
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457999999999999999999999999999998 887776653 25799999998762 4544 9888865
Q ss_pred cccCCChhHH------HHHHHHHHHhCCCCcEEEEEee
Q 017495 274 MLHGWTDEHC------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~~------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.......... ..+++.++++|||||+|++...
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td 151 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATD 151 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEES
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeC
Confidence 4432222211 2599999999999999998653
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.8e-11 Score=104.12 Aligned_cols=98 Identities=19% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-C--CCCC--CEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-N--VPRG--DAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~--~p~~--D~i~~~~v 274 (370)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..+++++.+|+.+ + ++.+ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 457899999999999999999999999999998 888877654 2579999999876 2 4443 98877543
Q ss_pred ccCCChhH------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 275 LHGWTDEH------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 275 Lh~~~d~~------~~~iL~~~~~~L~pgG~lli~e 304 (370)
..+....+ ...+|+.++++|+|||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 32111100 2578999999999999999864
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=110.73 Aligned_cols=112 Identities=18% Similarity=0.279 Sum_probs=86.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC-------CC--------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA-------PS--------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~--------~~rv~~~~~D 258 (370)
+..++..+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+ ++ ..+++++.+|
T Consensus 231 v~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD 309 (433)
T 1u2z_A 231 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 309 (433)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence 344555555 67788999999999999999999888888999998 7766655 32 2578898876
Q ss_pred CCC-C--C----CCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 259 MFE-N--V----PRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 259 ~~~-~--~----p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
... + + ...|+|++.++++. ++...+|+++.+.|+|||+|++.+...+..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~---~d~~~~L~el~r~LKpGG~lVi~d~f~p~~ 365 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD---EDLNKKVEKILQTAKVGCKIISLKSLRSLT 365 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC---HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccccCCCCEEEEeCcccc---ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence 543 2 1 12399999877742 456788999999999999999998877654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-11 Score=105.42 Aligned_cols=97 Identities=12% Similarity=0.060 Sum_probs=77.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-------C-CCE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-------R-GDA 268 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-------~-~D~ 268 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+..+ . .|+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 4578999999999999999999998 789999998 8887766532 469999999875211 2 399
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++.... .....+++.+.++|+|||.|++.+...
T Consensus 137 v~~d~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 170 (223)
T 3duw_A 137 IFIDADK-----QNNPAYFEWALKLSRPGTVIIGDNVVR 170 (223)
T ss_dssp EEECSCG-----GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred EEEcCCc-----HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 9876542 345689999999999999888866554
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=106.21 Aligned_cols=142 Identities=16% Similarity=0.137 Sum_probs=87.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CC--------CeEEe-ccCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PG--------VEHVG-GDMFENVP 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~r--------v~~~~-~D~~~~~p 264 (370)
..++..+.......+|||||||+|.++..+++. ...+++++|+ +.+++.+++. .+ +.+.. .|+....+
T Consensus 26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (232)
T 3opn_A 26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP 104 (232)
T ss_dssp HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC
T ss_pred HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC
Confidence 344455542234579999999999999999987 3348999998 7777664332 22 33222 22221111
Q ss_pred CCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCC-------ccc
Q 017495 265 RGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGG-------RER 337 (370)
Q Consensus 265 ~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~~~ 337 (370)
|.+.+..++.++ ..+|+.++++|||||++++.. .+. +..... .. ...| ...
T Consensus 105 --d~~~~D~v~~~l-----~~~l~~i~rvLkpgG~lv~~~--~p~---------~e~~~~--~~--~~~G~~~d~~~~~~ 162 (232)
T 3opn_A 105 --SFTSIDVSFISL-----DLILPPLYEILEKNGEVAALI--KPQ---------FEAGRE--QV--GKNGIIRDPKVHQM 162 (232)
T ss_dssp --SEEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEE--CHH---------HHSCHH--HH--C-CCCCCCHHHHHH
T ss_pred --CEEEEEEEhhhH-----HHHHHHHHHhccCCCEEEEEE--Ccc---------cccCHH--Hh--CcCCeecCcchhHH
Confidence 444444444433 478999999999999999953 110 000000 00 0011 123
Q ss_pred CHHHHHHHHHhCCCCcceEEecC
Q 017495 338 SKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+.+++.++++++||+++.+...+
T Consensus 163 ~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 163 TIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHHTEEEEEEEECS
T ss_pred HHHHHHHHHHHCCCEEEEEEEcc
Confidence 67899999999999998887653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=108.04 Aligned_cols=127 Identities=20% Similarity=0.234 Sum_probs=96.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~- 265 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++. ++++++.+|+.+..+.
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35555555 677889999999999999999999 67899999998 8887776542 4789999999876554
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
. |+|++ +.++. ..+|+++.++|+|||+|++...... ...++.+
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~-----------------------------~~~~~~~ 224 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETLK 224 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHHH
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCCHH-----------------------------HHHHHHH
Confidence 3 99987 23433 4789999999999999999764210 1234566
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
.|+++||+.+++...
T Consensus 225 ~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 225 KLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHSSEEEEEEECC
T ss_pred HHHHCCCceeEEEEE
Confidence 677788877665543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=104.00 Aligned_cols=109 Identities=20% Similarity=0.187 Sum_probs=83.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh--CCCCeEEEeeh-hhHHHhCCCC---C-------C------------
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR--YPCIKGISFDL-PHVLANAPSF---P-------G------------ 251 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~---~-------r------------ 251 (370)
.++..+. ..+..+|||+|||+|.++..+++. ++..+++++|+ +.+++.++.. . +
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444333 235679999999999999999998 77889999998 8888877632 2 2
Q ss_pred -------------Ce-------------EEeccCCCCC------CC-C-CEEEecccccCCCh-------hHHHHHHHHH
Q 017495 252 -------------VE-------------HVGGDMFENV------PR-G-DAIFLKWMLHGWTD-------EHCLKLLKNC 290 (370)
Q Consensus 252 -------------v~-------------~~~~D~~~~~------p~-~-D~i~~~~vLh~~~d-------~~~~~iL~~~ 290 (370)
++ +..+|+.+.. +. . |+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 66 9999998844 33 3 99999876655432 5567999999
Q ss_pred HHhCCCCcEEEEEeec
Q 017495 291 WEALPENGKVIIVESI 306 (370)
Q Consensus 291 ~~~L~pgG~lli~e~~ 306 (370)
+++|+|||+|+++...
T Consensus 201 ~~~LkpgG~l~~~~~~ 216 (250)
T 1o9g_A 201 ASALPAHAVIAVTDRS 216 (250)
T ss_dssp HHHSCTTCEEEEEESS
T ss_pred HHhcCCCcEEEEeCcc
Confidence 9999999999995543
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-11 Score=107.99 Aligned_cols=121 Identities=12% Similarity=0.020 Sum_probs=93.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .+|+++.+|+.+ +.. .. |+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4678999999999999999999999999999998 8888776642 469999999876 321 23 999987
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.+- +...+++.+.+.|+|||++++....... ....++.+.++..||.
T Consensus 159 a~~------~~~~ll~~~~~~LkpgG~l~~~~g~~~~---------------------------~e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 159 AVA------PLCVLSELLLPFLEVGGAAVAMKGPRVE---------------------------EELAPLPPALERLGGR 205 (249)
T ss_dssp SSC------CHHHHHHHHGGGEEEEEEEEEEECSCCH---------------------------HHHTTHHHHHHHHTEE
T ss_pred CcC------CHHHHHHHHHHHcCCCeEEEEEeCCCcH---------------------------HHHHHHHHHHHHcCCe
Confidence 542 2357899999999999999986532110 0123567778888999
Q ss_pred cceEEec
Q 017495 353 GLEIVCC 359 (370)
Q Consensus 353 ~v~~~~~ 359 (370)
..++.+.
T Consensus 206 ~~~~~~~ 212 (249)
T 3g89_A 206 LGEVLAL 212 (249)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9887765
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=98.07 Aligned_cols=101 Identities=11% Similarity=-0.075 Sum_probs=80.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CC-CC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VP-RG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p-~~-D~i~~~~ 273 (370)
.+..+|||+|||+|.++..++.. +..+++++|. +.+++.++++ ++++++.+|+.+. .+ .. |+|++..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~ 121 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP 121 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence 35689999999999999987774 5668999998 8888877653 4799999998762 22 33 9999988
Q ss_pred cccCCChhHHHHHHHHHHH--hCCCCcEEEEEeecCC
Q 017495 274 MLHGWTDEHCLKLLKNCWE--ALPENGKVIIVESILP 308 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~--~L~pgG~lli~e~~~~ 308 (370)
.+|+. .++...+++.+.+ +|+|||++++......
T Consensus 122 p~~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 122 PYNVD-SADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp CTTSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred CCCcc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 86653 3567899999999 9999999999776543
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.8e-11 Score=111.40 Aligned_cols=107 Identities=19% Similarity=0.142 Sum_probs=84.8
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~- 266 (370)
..+...+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.++.
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34555554 456789999999999999998885 56699999984465554431 579999999988 55555
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++..+++++..+.....+.++++.|+|||.+++..
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 99999999998877777788899999999999998643
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-10 Score=99.14 Aligned_cols=117 Identities=12% Similarity=0.074 Sum_probs=94.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~---~D~i~~~~v 274 (370)
++..+|+|||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+. .|+|++..+
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM 93 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence 3567999999999999999999999999999998 8888877652 5799999999885552 499988765
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
- .+-...+|..+.+.|+|+|+|++.-. . ..+.++++|.+.||.++
T Consensus 94 G----g~~i~~Il~~~~~~L~~~~~lVlq~~-~------------------------------~~~~vr~~L~~~Gf~i~ 138 (225)
T 3kr9_A 94 G----GRLIARILEEGLGKLANVERLILQPN-N------------------------------REDDLRIWLQDHGFQIV 138 (225)
T ss_dssp C----HHHHHHHHHHTGGGCTTCCEEEEEES-S------------------------------CHHHHHHHHHHTTEEEE
T ss_pred C----hHHHHHHHHHHHHHhCCCCEEEEECC-C------------------------------CHHHHHHHHHHCCCEEE
Confidence 3 34467999999999999999887221 0 24578899999999988
Q ss_pred eEE
Q 017495 355 EIV 357 (370)
Q Consensus 355 ~~~ 357 (370)
+-.
T Consensus 139 ~e~ 141 (225)
T 3kr9_A 139 AES 141 (225)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.4e-10 Score=104.84 Aligned_cols=121 Identities=12% Similarity=0.092 Sum_probs=92.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC-C-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR-G-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~-~-D~i~~~~v 274 (370)
.++..+|||+|||+|.++..+++..+. +++++|. |.+++.++++ ++++++.+|+.+..+. . |+|++...
T Consensus 123 ~~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 123 AKPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence 345789999999999999999998776 8999998 8888876542 4589999999883333 3 99988533
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. ....+++.+.++|+|||++++.+...... ......+++.+.++++||+..
T Consensus 202 ~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~~~~ 252 (278)
T 2frn_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred h------hHHHHHHHHHHHCCCCeEEEEEEeecccc-----------------------ccccHHHHHHHHHHHcCCeeE
Confidence 1 22578999999999999999988754210 001235778899999999876
Q ss_pred e
Q 017495 355 E 355 (370)
Q Consensus 355 ~ 355 (370)
.
T Consensus 253 ~ 253 (278)
T 2frn_A 253 K 253 (278)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=102.59 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------CCCCCeEEeccCCC--C--CCCC--
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------SFPGVEHVGGDMFE--N--VPRG-- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------~~~rv~~~~~D~~~--~--~p~~-- 266 (370)
.+..+|||||||+|.++..+++.+|+..++++|+ +.+++.++ ...+++++.+|+.+ + ++.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence 3567999999999999999999999999999998 77776442 23579999999986 2 4444
Q ss_pred CEEEecccccCCChhH------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLKWMLHGWTDEH------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|++...-.+..... ...+|+.++++|+|||.|++...
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td 169 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITD 169 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeC
Confidence 8887643322111000 03799999999999999998643
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=8.9e-11 Score=101.30 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=80.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-G- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~- 266 (370)
.++..+. ..+..+|||||||+|.++..+++. ..+++++|. +.+++.+++. .+++++.+|+.+..+ . .
T Consensus 68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 144 (210)
T 3lbf_A 68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPF 144 (210)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCc
Confidence 3444454 667889999999999999999998 678999998 8888776542 479999999987332 2 3
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++|++++ .+.+.|+|||+|++.-..
T Consensus 145 D~i~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 145 DAIIVTAAPPEIPT--------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp EEEEESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEEccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence 99999999999885 478999999999997654
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.6e-11 Score=104.69 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=77.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC--C------CCC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN--V------PRG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~--~------p~~-D~ 268 (370)
++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++|+++.+|+.+. . ... |+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 467999999999999999999986 789999998 8777766542 5899999998762 1 233 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
|++... ..+...+|+.+.++|+|||.|++.+....
T Consensus 140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~ 174 (242)
T 3r3h_A 140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD 174 (242)
T ss_dssp EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence 988654 23456789999999999999999776553
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=3.4e-11 Score=106.03 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC--
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-- 265 (370)
...++..+. ..+..+|||||||+|.++..+++..+ .+++++|. +.+++.+++. .++++..+|+..+++.
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 445555555 67788999999999999999999988 88999997 8887776542 4689999998545543
Q ss_pred -CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 -GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++..+++++++ ++.+.|+|||++++...
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence 299999999998774 57889999999999664
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=101.33 Aligned_cols=100 Identities=14% Similarity=0.124 Sum_probs=81.1
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R-G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~-~ 266 (370)
.++..+. ..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++. .++++..+|+....+ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4444444 6677899999999999999999987 6689999998 8888777642 468999999866444 2 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++..++|++++ ++.+.|+|||++++...
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred eeEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence 99999999998773 67899999999999764
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=103.23 Aligned_cols=98 Identities=13% Similarity=0.098 Sum_probs=78.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCCC--C-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVPR--G-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p~--~-D~i 269 (370)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++. ++|+++.+|+.+ ..+. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 34578999999999999999999998 889999998 8888776542 479999999865 2222 3 999
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++... ......+|+++.++|+|||+|++.+...
T Consensus 141 ~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 141 FIDAD-----KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp EECSC-----GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred EECCc-----hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 98543 3345689999999999999998866543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.6e-10 Score=98.26 Aligned_cols=129 Identities=11% Similarity=0.013 Sum_probs=100.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC---CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR---GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~---~D~i~~~~v 274 (370)
++..+|+|||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+. .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm 99 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM 99 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence 4568999999999999999999988889999998 8888887652 5799999999984432 399988766
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. .+-...+|....+.|+++|+|++.-. ...+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~l~~~~~lIlqp~-------------------------------~~~~~lr~~L~~~Gf~i~ 144 (230)
T 3lec_A 100 G----GRLIADILNNDIDKLQHVKTLVLQPN-------------------------------NREDDLRKWLAANDFEIV 144 (230)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEES-------------------------------SCHHHHHHHHHHTTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCcCCEEEEECC-------------------------------CChHHHHHHHHHCCCEEE
Confidence 4 34567899999999999999887331 025678999999999988
Q ss_pred eEEec---CCCeeEEEEe
Q 017495 355 EIVCC---AYNSWVMEFH 369 (370)
Q Consensus 355 ~~~~~---~~~~~~~e~~ 369 (370)
+-.-+ +....+|.+.
T Consensus 145 ~E~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 145 AEDILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEEEC--CEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEEE
Confidence 75432 2344455543
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-10 Score=106.69 Aligned_cols=101 Identities=23% Similarity=0.263 Sum_probs=77.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPR-G- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~- 266 (370)
.+...+. ..+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.+. .
T Consensus 55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 132 (340)
T 2fyt_A 55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 132 (340)
T ss_dssp HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcE
Confidence 3444443 566789999999999999999886 45689999984477666542 579999999988 6663 3
Q ss_pred CEEEecc---cccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 267 DAIFLKW---MLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 267 D~i~~~~---vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
|+|++.. .+++ ......+|+.+.++|+|||+++
T Consensus 133 D~Ivs~~~~~~l~~--~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 133 DVIISEWMGYFLLF--ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp EEEEECCCBTTBTT--TCHHHHHHHHHHHHEEEEEEEE
T ss_pred EEEEEcCchhhccC--HHHHHHHHHHHHhhcCCCcEEE
Confidence 9999876 3444 3355789999999999999998
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=6.9e-11 Score=103.02 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC---CCC-----CC-C
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE---NVP-----RG-D 267 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~---~~p-----~~-D 267 (370)
.++.+|||||||+|..+..+++.++ +.+++++|+ +.+++.++++ ++++++.+|+.+ ..+ .. |
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD 136 (221)
T 3u81_A 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD 136 (221)
T ss_dssp HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence 3568999999999999999999875 789999998 8888877652 469999999754 222 23 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|++....+++.+ ...++..+ ++|+|||.|++.+..
T Consensus 137 ~V~~d~~~~~~~~--~~~~~~~~-~~LkpgG~lv~~~~~ 172 (221)
T 3u81_A 137 MVFLDHWKDRYLP--DTLLLEKC-GLLRKGTVLLADNVI 172 (221)
T ss_dssp EEEECSCGGGHHH--HHHHHHHT-TCCCTTCEEEESCCC
T ss_pred EEEEcCCcccchH--HHHHHHhc-cccCCCeEEEEeCCC
Confidence 9999887776542 34677777 999999999886554
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.09 E-value=6.8e-11 Score=101.73 Aligned_cols=91 Identities=15% Similarity=0.128 Sum_probs=74.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|..+..++..+|+.+++++|. +.+++.+++. .++++..+|+.+..+. . |+|++..+ +
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~- 142 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A- 142 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S-
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C-
Confidence 367999999999999999999999999999998 8887766542 3599999999874333 3 99997543 2
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+...+++.++++|+|||++++.
T Consensus 143 ----~~~~~l~~~~~~L~~gG~l~~~ 164 (207)
T 1jsx_A 143 ----SLNDMVSWCHHLPGEQGRFYAL 164 (207)
T ss_dssp ----SHHHHHHHHTTSEEEEEEEEEE
T ss_pred ----CHHHHHHHHHHhcCCCcEEEEE
Confidence 2358999999999999999986
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.9e-10 Score=100.15 Aligned_cols=94 Identities=18% Similarity=0.157 Sum_probs=76.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCCC--C---CC--CCEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFEN--V---PR--GDAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~~--~---p~--~D~i~~~~ 273 (370)
++.+|||||||+|..+..+++. .|+.+++++|+ +.+++.++. ..+|+++.+|+.+. . .. .|+|++..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~ 160 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN 160 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence 3579999999999999999987 68899999998 888777754 26799999999873 2 22 39998765
Q ss_pred cccCCChhHHHHHHHHHHH-hCCCCcEEEEEee
Q 017495 274 MLHGWTDEHCLKLLKNCWE-ALPENGKVIIVES 305 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~-~L~pgG~lli~e~ 305 (370)
. |. +...+|+.+.+ .|+|||+|++.+.
T Consensus 161 ~-~~----~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 161 A-HA----NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp S-CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred c-hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 4 42 34678999997 9999999999665
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-11 Score=104.05 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC----CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP----RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p----~~-D~i~~~ 272 (370)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+..+ .. |+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 3578999999999999999999889999999998 8888877642 489999999987433 33 999976
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
... .....+++.+.+.|+|||+|++.+...
T Consensus 150 ~~~-----~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 150 AAK-----AQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp TTS-----SSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred CcH-----HHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 432 235679999999999999998855443
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-10 Score=105.74 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=78.4
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC-C-CEEEecccc
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR-G-DAIFLKWML 275 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~-~-D~i~~~~vL 275 (370)
+.+|||||||+|.++..+++.+|+.+++++|+ +.+++.++++ +|++++.+|..+ ..+. . |+|++....
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~ 169 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA 169 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence 45999999999999999999999999999999 9998877642 589999999876 2333 3 999986544
Q ss_pred cCCChhHH--HHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTDEHC--LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~~--~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+....... ..+++.++++|+|||.|++...
T Consensus 170 ~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 170 GAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 43222221 5899999999999999998664
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=98.12 Aligned_cols=117 Identities=11% Similarity=0.072 Sum_probs=94.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-C--CCEEEeccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-R--GDAIFLKWM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-~--~D~i~~~~v 274 (370)
++..+|||||||+|.++..+++..|..+++++|. +..++.++++ ++|+++.+|.++..+ . .|+|++..+
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm 99 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM 99 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence 4568999999999999999999988889999998 8888887653 579999999998443 2 499988665
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. .+-...+|....+.|+++++|++.-.. ..+.++++|.+.||.++
T Consensus 100 G----g~lI~~IL~~~~~~L~~~~~lIlq~~~-------------------------------~~~~lr~~L~~~Gf~i~ 144 (244)
T 3gnl_A 100 G----GTLIRTILEEGAAKLAGVTKLILQPNI-------------------------------AAWQLREWSEQNNWLIT 144 (244)
T ss_dssp C----HHHHHHHHHHTGGGGTTCCEEEEEESS-------------------------------CHHHHHHHHHHHTEEEE
T ss_pred c----hHHHHHHHHHHHHHhCCCCEEEEEcCC-------------------------------ChHHHHHHHHHCCCEEE
Confidence 4 345678999999999999999884310 25678899999999986
Q ss_pred eEE
Q 017495 355 EIV 357 (370)
Q Consensus 355 ~~~ 357 (370)
+-.
T Consensus 145 ~E~ 147 (244)
T 3gnl_A 145 SEA 147 (244)
T ss_dssp EEE
T ss_pred EEE
Confidence 533
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.3e-10 Score=100.15 Aligned_cols=101 Identities=18% Similarity=0.203 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCCCCC--CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFENVP--RG- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~~~p--~~- 266 (370)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|. +.+++.+++. .+++++.+|+.+..+ ..
T Consensus 59 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f 135 (231)
T 1vbf_A 59 GIFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY 135 (231)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred HHHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence 334555554 6677899999999999999999986 68999998 8888776542 279999999987333 23
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++..++|++++ .+.+.|+|||++++....
T Consensus 136 D~v~~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 136 DRVVVWATAPTLLC--------KPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred cEEEECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence 99999999999874 478899999999998653
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.3e-10 Score=108.29 Aligned_cols=104 Identities=13% Similarity=0.140 Sum_probs=79.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCc------ccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCC--
Q 017495 196 NKILDVYRGFDGLKVLVDVGGG------IGVTLGMITSR-YPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVP-- 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G------~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p-- 264 (370)
..++..+. .++.+||||||| +|..+..++++ +|+.+++++|+ +.+.. ...+++++.+|+.+ +++
T Consensus 207 e~lL~~l~--~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~---~~~rI~fv~GDa~dlpf~~~ 281 (419)
T 3sso_A 207 DRHFRDYR--NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV---DELRIRTIQGDQNDAEFLDR 281 (419)
T ss_dssp HHHHGGGT--TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG---CBTTEEEEECCTTCHHHHHH
T ss_pred HHHHHhhc--CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh---cCCCcEEEEecccccchhhh
Confidence 34444442 356899999999 77777777766 59999999998 66632 34689999999987 444
Q ss_pred -----CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 -----RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 -----~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|++. ..|++. +....|++++++|||||++++.|...
T Consensus 282 l~~~d~sFDlVisd-gsH~~~--d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 282 IARRYGPFDIVIDD-GSHINA--HVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp HHHHHCCEEEEEEC-SCCCHH--HHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred hhcccCCccEEEEC-Ccccch--hHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 23 999886 456543 45789999999999999999988763
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=107.52 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=78.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC-----------------CCCCeEEe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS-----------------FPGVEHVG 256 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-----------------~~rv~~~~ 256 (370)
..++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ ..+++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34455554 667889999999999999999998 57789999998 877776653 14799999
Q ss_pred ccCCCC---CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 257 GDMFEN---VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 257 ~D~~~~---~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|+.+. .+.+ |+|++... ++ ..+++.+.++|+|||+|++....
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~~-----~~--~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDML-----NP--HVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp SCTTCCC-------EEEEEECSS-----ST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred CChHHcccccCCCCeeEEEECCC-----CH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence 999873 3433 99988432 22 23789999999999999987754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=107.77 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC--CEEEecccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG--DAIFLKWML 275 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~--D~i~~~~vL 275 (370)
.+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.|.. |+|++..+.
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~ 143 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG 143 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred CCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence 45789999999999999999987 66799999985566665532 469999999998 66643 999987654
Q ss_pred cCC-ChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGW-TDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~-~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+++ ..+....+|+.+.++|+|||+++.
T Consensus 144 ~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 144 YCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred ccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 443 223456899999999999999874
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.6e-10 Score=100.10 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=77.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCC-CCCCC--CEEEecccccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d 280 (370)
.+..+|||||||+|.++..+++.+|+.+++++|. +.+++.+++. .++.+..+|+.+ +.+.+ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 4568999999999999999999988899999998 8888777653 578999999887 55543 999986553
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+++++++|+|||++++..+..
T Consensus 159 ----~~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 ----CKAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence 24889999999999999988754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.7e-10 Score=101.89 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=76.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCC--------CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFEN--------VPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~--------~p~ 265 (370)
..+..+|||+|||+|.++..+++++|..+++++|+ +.+++.++++ ++++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45678999999999999999999999999999998 8877765431 2589999999874 233
Q ss_pred -C-CEEEeccccc----------------CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 -G-DAIFLKWMLH----------------GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 -~-D~i~~~~vLh----------------~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|+++--.+ |........+++.+.+.|+|||+++++.
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 3 9999962221 1222235689999999999999999853
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.3e-10 Score=104.77 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=80.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC-CC-CC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN-VP-RG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~-~p-~~-D~i~~~~vLh~ 277 (370)
+..+|||+|||+|.++..+++. +.+++++|. +.+++.++++ .+++++.+|+.+. .+ .. |+|++...+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 5679999999999999999987 569999998 8888877653 2589999999983 33 23 99999999887
Q ss_pred ---CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 278 ---WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 278 ---~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
...+....+++++++.|+|||+++++..
T Consensus 311 ~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n 341 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccccHHHHHHHHHHHHHhcCcCcEEEEEEc
Confidence 3345678999999999999999999753
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-10 Score=101.14 Aligned_cols=131 Identities=10% Similarity=-0.030 Sum_probs=99.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCC-C-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPR-G-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~-~-D~i~~~~vLh~ 277 (370)
..+.+|||||||.|-++..+....|..+++++|+ +.+++.++++ .+.++...|+....|. . |++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 4578999999999999999999999999999998 8888877653 3578999999884443 3 99999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
+.++.....+ ++..+|+|+|.++..+.-.=.++. ..++- .-...|++.+.+.|..+.++
T Consensus 211 Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--------~gm~~-----------~Y~~~~e~~~~~~g~~~~~~ 269 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--------KGMFQ-----------NYSQSFESQARERSCRIQRL 269 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHHH-----------HHHHHHHHHHHHHTCCEEEE
T ss_pred hhhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--------cchhh-----------HHHHHHHHHHHhcCCceeee
Confidence 9887666777 899999999988877662111110 01111 12567899999999854433
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=101.80 Aligned_cols=97 Identities=12% Similarity=0.156 Sum_probs=79.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-----CCC-CEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV-----PRG-DAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~-----p~~-D~i~~ 271 (370)
.+..+|||||||+|..+..+++.+|+.+++++|. +.+++.+++. ++++++.+|+.+.. +.. |+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 3567999999999999999999999999999998 8888776542 47999999987621 233 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
....+ +...+|+.+.+.|+|||+|++.+...
T Consensus 133 ~~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~ 163 (233)
T 2gpy_A 133 DAAKG-----QYRRFFDMYSPMVRPGGLILSDNVLF 163 (233)
T ss_dssp EGGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred CCCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence 77764 34688999999999999999976543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=3.2e-10 Score=104.46 Aligned_cols=102 Identities=21% Similarity=0.275 Sum_probs=81.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-C-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-R- 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~- 265 (370)
..++..+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.+++. .+++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34455554 66778999999999999999999887 478999998 8888776542 459999999987332 2
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
. |+|++..++|+++ +.+.+.|||||++++....
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBCB
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEECC
Confidence 3 9999999999877 3578899999999997543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=101.97 Aligned_cols=95 Identities=19% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC--------------CCCCCeEEeccCCCC----CCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP--------------SFPGVEHVGGDMFEN----VPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~--------------~~~rv~~~~~D~~~~----~p~ 265 (370)
.++..+|||||||+|.++..+++.+|+..++++|. +.+++.++ ...+++++.+|+.+. ++.
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 34567999999999999999999999999999998 77776542 225799999999863 333
Q ss_pred C--CEEEecccccCCChhHH-----------HHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G--DAIFLKWMLHGWTDEHC-----------LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~-----------~~iL~~~~~~L~pgG~lli~e 304 (370)
+ |.|++. ++++.. ..+|+.+.++|+|||.|++..
T Consensus 127 ~~~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 127 GQLSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp TCEEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 3 666532 233311 379999999999999999953
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=107.66 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vL 275 (370)
..+..+|||||||+|.++..+++. ...+++++|...+++.+++. ++++++.+|+.+ +.+.. |+|++..+.
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQA-GARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMG 139 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCB
T ss_pred cCCCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChh
Confidence 557789999999999999999987 33489999986666655432 569999999987 55544 999997766
Q ss_pred cCCCh-hHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 276 HGWTD-EHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 276 h~~~d-~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|.... .....+++.+.+.|+|||.+++.+...
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~~ 172 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSHARM 172 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSEEEE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEecCeE
Confidence 66543 235689999999999999998866543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=8.1e-11 Score=102.70 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=77.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC-----CC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP-----RG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p-----~~-D~ 268 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ .. |+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 567999999999999999999988 789999998 8887776542 4699999998652 11 33 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++... ..+...+++.+.++|+|||+|++.+...
T Consensus 144 v~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 144 IYIDAD-----KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EEECCC-----HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 986543 3345689999999999999999877654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-10 Score=99.20 Aligned_cols=97 Identities=19% Similarity=0.165 Sum_probs=77.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C----------
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V---------- 263 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~---------- 263 (370)
.+..+|||||||+|..+..+++.+| ..+++++|. +.+++.+++. ++++++.+|+.+. .
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 4567999999999999999999987 689999998 8887776542 3589999997652 1
Q ss_pred -----C-CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 264 -----P-RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 264 -----p-~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+ .. |+|++.... +....+|+++.+.|+|||+|++.+...
T Consensus 139 ~~f~~~~~~fD~I~~~~~~-----~~~~~~l~~~~~~L~pgG~lv~~~~~~ 184 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK-----ENYPNYYPLILKLLKPGGLLIADNVLW 184 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG-----GGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred ccccCCCCCcCEEEEeCCH-----HHHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 1 33 999987543 345688999999999999999876443
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.02 E-value=6e-10 Score=94.79 Aligned_cols=106 Identities=21% Similarity=0.288 Sum_probs=76.8
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCC----------
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENV---------- 263 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~---------- 263 (370)
.+.++...+.-+++..+|||+|||+|.++..++++ ..+++++|+..+ ....+++++.+|+.+..
T Consensus 12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~ 85 (191)
T 3dou_A 12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALR 85 (191)
T ss_dssp HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhh
Confidence 34566666653567789999999999999999987 778999998332 22357999999998731
Q ss_pred ----CCCCEEEecccccC---CC-h-----hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 264 ----PRGDAIFLKWMLHG---WT-D-----EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 264 ----p~~D~i~~~~vLh~---~~-d-----~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
...|+|++...... +. + +.+..+|+.+.++|+|||.|++..+
T Consensus 86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 22399998542211 00 1 1245789999999999999997554
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=93.22 Aligned_cols=105 Identities=17% Similarity=0.200 Sum_probs=76.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC---------CeEEEeehhhHHHhCCCCCCCeEE-eccCCC-C---
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC---------IKGISFDLPHVLANAPSFPGVEHV-GGDMFE-N--- 262 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~---------~~~~~~D~p~~~~~a~~~~rv~~~-~~D~~~-~--- 262 (370)
++...+..+.+..+|||||||+|.++..+++.++. .+++++|+..+ ....+++++ .+|+.. +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~ 87 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQ 87 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence 44444443567789999999999999999999865 78999998432 123568899 999876 2
Q ss_pred -----CCC-C-CEEEecccccC----CChhH-----HHHHHHHHHHhCCCCcEEEEEee
Q 017495 263 -----VPR-G-DAIFLKWMLHG----WTDEH-----CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 263 -----~p~-~-D~i~~~~vLh~----~~d~~-----~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. . |+|++...+|. ..+.. ...+|+.+.++|+|||+|++..+
T Consensus 88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 222 3 99998654442 12221 14789999999999999998765
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-10 Score=96.56 Aligned_cols=95 Identities=12% Similarity=0.156 Sum_probs=75.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC---CC-CCC-CEEEec
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE---NV-PRG-DAIFLK 272 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~---~~-p~~-D~i~~~ 272 (370)
..+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|+.+ .. +.. |+|++.
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d 136 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ 136 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence 34999999999999999999875 789999998 8888776542 479999999876 23 233 999886
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
... .+...+++.+.+.|+|||.|++.+...
T Consensus 137 ~~~-----~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 137 VSP-----MDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CCT-----TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred CcH-----HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 433 234578999999999999999855543
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.00 E-value=3.1e-10 Score=95.08 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=79.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CCC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VPR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p~ 265 (370)
.+...+....+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++. ++++++.+|+.+. .+.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33333432346789999999999999999887 6679999998 8888776542 3689999998762 223
Q ss_pred C-CEEEecccccCCChhHHHHHHHHHH--HhCCCCcEEEEEeecCC
Q 017495 266 G-DAIFLKWMLHGWTDEHCLKLLKNCW--EALPENGKVIIVESILP 308 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~~~~ 308 (370)
. |+|++...+|. .....+++.+. ++|+|||.+++......
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 3 99999766542 33456777776 99999999999776543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=98.89 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFE-N 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~-~ 262 (370)
...++..+. ..+..+|||+|||+|.++..+++. .|..+++++|. +.+++.+++ .++++++.+|+.+ +
T Consensus 88 ~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~ 166 (280)
T 1i9g_A 88 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 166 (280)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence 345555555 677889999999999999999986 57889999998 887776543 2479999999987 4
Q ss_pred CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 263 VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 263 ~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.+. . |+|++. .+++ ..+|+++.++|+|||++++..+.
T Consensus 167 ~~~~~~D~v~~~-----~~~~--~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 167 LPDGSVDRAVLD-----MLAP--WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CCTTCEEEEEEE-----SSCG--GGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCCceeEEEEC-----CcCH--HHHHHHHHHhCCCCCEEEEEeCC
Confidence 443 3 999872 2333 37899999999999999997753
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.5e-10 Score=99.86 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=74.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-CC---CEEEec--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-RG---DAIFLK-- 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-~~---D~i~~~-- 272 (370)
+..+|||+|||+|.++..+++. |+.+++++|+ +.+++.++++ ++++++.+|+++..+ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4579999999999999999999 9999999998 8888877642 369999999988443 45 999996
Q ss_pred ----------ccccCCChh------HHHHHHHHHH-HhCCCCcEEEE
Q 017495 273 ----------WMLHGWTDE------HCLKLLKNCW-EALPENGKVII 302 (370)
Q Consensus 273 ----------~vLh~~~d~------~~~~iL~~~~-~~L~pgG~lli 302 (370)
.+. |.+.. +...+++++. +.|+|||+|++
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~ 247 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 247 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence 333 22221 1127899999 99999999997
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.3e-09 Score=96.97 Aligned_cols=96 Identities=15% Similarity=0.122 Sum_probs=72.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh--hhHHHhCCCC----------------CCCeEEeccCCCC---C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL--PHVLANAPSF----------------PGVEHVGGDMFEN---V 263 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~----------------~rv~~~~~D~~~~---~ 263 (370)
..+..+|||||||+|.++..+++. ...+++++|+ +.+++.++++ +++++...|..+. .
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 345679999999999999988875 3348999998 5666654321 2688886665431 1
Q ss_pred -----CCC-CEEEecccccCCChhHHHHHHHHHHHhCC---C--CcEEEEE
Q 017495 264 -----PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALP---E--NGKVIIV 303 (370)
Q Consensus 264 -----p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~---p--gG~lli~ 303 (370)
+.. |+|++..++|+.+ +...+++.+.++|+ | ||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~--~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQ--AHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGG--GHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChH--HHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 233 9999999999844 45789999999999 9 9998774
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-10 Score=98.45 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=76.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--CCCC-CCEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--NVPR-GDAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~~p~-~D~i~~~~v 274 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|..+ +... .|+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 467999999999999999999988 789999998 8888877642 469999999865 2222 488887632
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+...+++++.++|+|||.|++.+...
T Consensus 136 -----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 163 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAKNALLIAVNALR 163 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred -----hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence 2234689999999999999999866544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.7e-10 Score=95.32 Aligned_cols=107 Identities=13% Similarity=0.003 Sum_probs=78.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-----
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV----- 263 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~----- 263 (370)
.+.+.+....+..+|||+|||+|.++..+++ .+..+++++|. +.+++.+++. ++++++.+|+.+..
T Consensus 34 ~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 112 (187)
T 2fhp_A 34 SIFNMIGPYFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE 112 (187)
T ss_dssp HHHHHHCSCCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh
Confidence 3334443244678999999999999998887 45679999998 8888877642 46899999987621
Q ss_pred -CCC-CEEEecccccCCChhHHHHHHHHH--HHhCCCCcEEEEEeecC
Q 017495 264 -PRG-DAIFLKWMLHGWTDEHCLKLLKNC--WEALPENGKVIIVESIL 307 (370)
Q Consensus 264 -p~~-D~i~~~~vLh~~~d~~~~~iL~~~--~~~L~pgG~lli~e~~~ 307 (370)
+.. |+|++...++.... ..+++.+ .++|+|||.+++.....
T Consensus 113 ~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 113 EKLQFDLVLLDPPYAKQEI---VSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp TTCCEEEEEECCCGGGCCH---HHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred cCCCCCEEEECCCCCchhH---HHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 233 99999877653332 3556666 78899999999876544
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=6.9e-10 Score=102.67 Aligned_cols=96 Identities=20% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC-------CCCeEEeccCCC-CCC-CC-CEEEecccc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF-------PGVEHVGGDMFE-NVP-RG-DAIFLKWML 275 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-------~rv~~~~~D~~~-~~p-~~-D~i~~~~vL 275 (370)
.+..+|||||||+|.++..+++. +..+++++|...+++.+++. ++++++.+|+.+ +.| +. |+|++..+.
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~ 115 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG 115 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred cCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence 35679999999999999988886 55689999985566655431 579999999988 566 33 999987554
Q ss_pred cCCC-hhHHHHHHHHHHHhCCCCcEEEE
Q 017495 276 HGWT-DEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 276 h~~~-d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+++. ......+|+.+.+.|+|||+++.
T Consensus 116 ~~l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 116 YFLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred hhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 4432 23356889999999999999974
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=5.3e-10 Score=99.13 Aligned_cols=96 Identities=15% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--C-C------CCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--N-V------PRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~-~------p~~- 266 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++|+++.+|..+ + . +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3567999999999999999999988 789999998 8887776542 479999999865 2 1 233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++.... .+...+++.+.++|+|||.|++.+..
T Consensus 158 D~V~~d~~~-----~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 158 DFIFVDADK-----DNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp SEEEECSCS-----TTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEEEcCch-----HHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 999986432 24568999999999999999886544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.94 E-value=3.2e-09 Score=94.92 Aligned_cols=106 Identities=12% Similarity=-0.029 Sum_probs=74.0
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--C------CCeEE--eccCCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF--P------GVEHV--GGDMFENVPR 265 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~------rv~~~--~~D~~~~~p~ 265 (370)
..+..... +.+..+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+.
T Consensus 64 ~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~ 139 (265)
T 2oxt_A 64 AWMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVE 139 (265)
T ss_dssp HHHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCC
T ss_pred HHHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCC
Confidence 34444422 567789999999999999999886 689999983353333221 2 58888 9999872233
Q ss_pred C-CEEEecccccCCChh---H--HHHHHHHHHHhCCCCc--EEEEEeec
Q 017495 266 G-DAIFLKWMLHGWTDE---H--CLKLLKNCWEALPENG--KVIIVESI 306 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~---~--~~~iL~~~~~~L~pgG--~lli~e~~ 306 (370)
. |+|++... ++.... + ...+|+.+.++|+||| .+++-.+.
T Consensus 140 ~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 140 RTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp CCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 3 99999766 433221 1 1248999999999999 99985554
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.9e-09 Score=99.04 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-CCC-CEEEec-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-PRG-DAIFLK- 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-p~~-D~i~~~- 272 (370)
..+..+|||+|||+|..+..+++..+ ..+++++|. +.+++.++++ .+++++.+|+.+ +. +.. |+|++.
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~ 195 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 195 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence 56778999999999999999999875 478999998 8777766542 468999999877 32 333 999983
Q ss_pred -----ccccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 -----WMLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 -----~vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.++++ |+.++. ..+|+++.+.|||||+|++.....
T Consensus 196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 23433 222221 589999999999999999976544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.92 E-value=9.4e-10 Score=96.15 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=76.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC------CCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCCCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP------CIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENVPR- 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p------~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~p~- 265 (370)
..+..+|||||||+|.++..+++..+ ..+++++|. +.+++.+++ ..+++++.+|..+.++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 45678999999999999999998765 368999998 888777654 24799999999875543
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ |+|++...+|++. +.+.+.|+|||+|++.-.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence 3 9999999998865 468899999999998654
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.7e-09 Score=96.48 Aligned_cols=97 Identities=18% Similarity=0.095 Sum_probs=68.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-----hhHHHhCC--CC--CCCeEEec-cCCCCCCC-CCEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-----PHVLANAP--SF--PGVEHVGG-DMFENVPR-GDAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-----p~~~~~a~--~~--~rv~~~~~-D~~~~~p~-~D~i~~~~ 273 (370)
+++..+|||||||+|.++..++++ .+++++|. +..++... .. +++.++.+ |+....++ .|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 556789999999999999999987 46888887 43333222 11 46899999 88763233 39999976
Q ss_pred ccc---CCChhH-HHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLH---GWTDEH-CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh---~~~d~~-~~~iL~~~~~~L~pgG~lli~e 304 (370)
.++ +..+.. ...+|+.+.++|||||.|++..
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 653 212221 2268999999999999888743
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.6e-09 Score=98.93 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=83.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~ 265 (370)
...++.... +.+..+|||+|||+|.++..++... |+.+++++|+ +.+++.++++ +++++..+|+.+ +.+.
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555444 7788899999999999999999988 8899999998 8888877653 379999999987 4332
Q ss_pred -C-CEEEecccccCC-C-hhH----HHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 -G-DAIFLKWMLHGW-T-DEH----CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 -~-D~i~~~~vLh~~-~-d~~----~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++.--.+.. . ..+ ...+++.+.+.|+|||++++..
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3 999985332211 1 111 2689999999999999999964
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.9e-09 Score=92.57 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=79.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC-CC-C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV-PR-G 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~-p~-~ 266 (370)
.++..+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.+++. +++++..+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4455454 667789999999999999999998 679999998 8877766542 57899999998854 43 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++. .++. ..+|+++.++|+|||++++..+.
T Consensus 159 ~D~v~~~-----~~~~--~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 159 FHAAFVD-----VREP--WHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp BSEEEEC-----SSCG--GGGHHHHHHHBCTTCEEEEEESS
T ss_pred ccEEEEC-----CcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence 999872 3332 47899999999999999997753
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=6.6e-10 Score=100.57 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=77.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC---CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN---VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~---~p~~-D~i~ 270 (370)
+++.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 4568999999999999999998878889999998 888876543 25799999998762 2333 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+....+..+.... ..+++.++++|+|||.+++..
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 8654443233222 589999999999999999853
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-10 Score=92.67 Aligned_cols=96 Identities=11% Similarity=-0.030 Sum_probs=73.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-CCeEEeccCCCCCC------CC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P-GVEHVGGDMFENVP------RG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~D~~~~~p------~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..+++..+. ++++|. +.+++.++++ . +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 5679999999999999999998665 999998 8888877642 1 79999999876211 13 9999987
Q ss_pred cccCCChhHHHHHHHHHH--HhCCCCcEEEEEeecCC
Q 017495 274 MLHGWTDEHCLKLLKNCW--EALPENGKVIIVESILP 308 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~--~~L~pgG~lli~e~~~~ 308 (370)
.+|. ..+ .+++.+. ++|+|||.+++......
T Consensus 119 ~~~~-~~~---~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 119 PYAM-DLA---ALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp CTTS-CTT---HHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCch-hHH---HHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 7762 222 4455555 99999999998766543
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.8e-09 Score=95.00 Aligned_cols=107 Identities=13% Similarity=-0.033 Sum_probs=74.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCC--C------CCeEE--eccCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSF--P------GVEHV--GGDMFENVP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~------rv~~~--~~D~~~~~p 264 (370)
+..+..... +.+..+|||||||+|.++..+++. .+++++|+..+...+++. . ++.++ .+|+.+-.+
T Consensus 71 L~~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~ 146 (276)
T 2wa2_A 71 LAWIDERGG-VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEP 146 (276)
T ss_dssp HHHHHHTTS-CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCC
T ss_pred HHHHHHcCC-CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCC
Confidence 344444422 557789999999999999999987 589999983353333221 1 68888 899876213
Q ss_pred CC-CEEEecccccCCChh----H-HHHHHHHHHHhCCCCc--EEEEEeec
Q 017495 265 RG-DAIFLKWMLHGWTDE----H-CLKLLKNCWEALPENG--KVIIVESI 306 (370)
Q Consensus 265 ~~-D~i~~~~vLh~~~d~----~-~~~iL~~~~~~L~pgG--~lli~e~~ 306 (370)
.. |+|++... +..... . ...+|+.+.++|+||| .+++..+.
T Consensus 147 ~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 147 FQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred CCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 33 99999776 433221 1 1247999999999999 98885544
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.89 E-value=2.1e-09 Score=93.84 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=76.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCC----
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENV---- 263 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~---- 263 (370)
..+..+|||||||+|.++..+++.. |..+++++|. +.+++.+++ ..+++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 5567899999999999999999986 5779999998 887776654 247999999988743
Q ss_pred C--CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 264 P--RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 264 p--~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+ .. |+|++...+|++. +.+.+.|+|||++++.-..
T Consensus 158 ~~~~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 158 KELGLFDAIHVGASASELP--------EILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp HHHCCEEEEEECSBBSSCC--------HHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCcCEEEECCchHHHH--------HHHHHhcCCCcEEEEEEcc
Confidence 2 22 9999999998653 6778999999999997653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=8.5e-10 Score=96.40 Aligned_cols=98 Identities=12% Similarity=0.165 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC-----CC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP-----RG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p-----~~- 266 (370)
..+..+|||||||+|..+..+++.+| +.+++++|. +.+++.+++. ++++++.+|+.+. .+ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34568999999999999999999887 789999998 8877766542 5799999998652 11 33
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+|++... ......+++.+.++|+|||.+++.+...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRPGGILAVLRVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 99998543 2345688999999999999999876543
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9e-10 Score=101.82 Aligned_cols=98 Identities=19% Similarity=0.139 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC---CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE---NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~---~~p~-~-D~i 269 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+ ..+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 4568999999999999999999888889999998 888877653 2579999999875 2333 3 999
Q ss_pred EecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 270 FLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 270 ~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
++....+..+.+. ...+++.++++|+|||+|++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9854422111111 368999999999999999985
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=8.7e-10 Score=101.26 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=77.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCC--C-CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFEN--V-PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~--~-p~~-D~i 269 (370)
+.+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence 3568999999999999999999878889999998 888776543 25799999998762 2 233 999
Q ss_pred EecccccC---CChhH--HHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWMLHG---WTDEH--CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vLh~---~~d~~--~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++....|. -+... ...+++.++++|+|||.|++...
T Consensus 156 i~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 196 (314)
T 1uir_A 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG 196 (314)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence 99766553 11111 25899999999999999998643
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-11 Score=104.11 Aligned_cols=134 Identities=19% Similarity=0.113 Sum_probs=93.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.. |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 57899999999999999999864 88999998 8888877642 379999999987 32223 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceE
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~ 356 (370)
+..+. ...+.+++++|+|||.+++........ +.... -......+++.+++...|.-.+..
T Consensus 156 ~~~~~--~~~~~~~~~~L~pgG~~i~~~~~~~~~-------------~~~~~----lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 156 GPDYA--TAETFDIRTMMSPDGFEIFRLSKKITN-------------NIVYF----LPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp SGGGG--GSSSBCTTTSCSSCHHHHHHHHHHHCS-------------CEEEE----EETTBCHHHHHHTTCTTCCEEEEE
T ss_pred Ccchh--hhHHHHHHhhcCCcceeHHHHHHhhCC-------------ceEEE----CCCCCCHHHHHHHhccCCCEEEEe
Confidence 86654 346778999999999865533211000 00000 011235677888887777655554
Q ss_pred EecCC
Q 017495 357 VCCAY 361 (370)
Q Consensus 357 ~~~~~ 361 (370)
....+
T Consensus 217 ~~~~~ 221 (241)
T 3gdh_A 217 NFLNN 221 (241)
T ss_dssp EEETT
T ss_pred hhhcC
Confidence 44433
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.9e-10 Score=99.26 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=75.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CC-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NV-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~-p~~-D~i~~ 271 (370)
.+.+|||||||+|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|..+ .. +.. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 568999999999999999998777789999998 888886653 2589999999876 22 233 99999
Q ss_pred cccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
....+..+... ...+++.++++|+|||.+++..
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 65443222111 1478999999999999998853
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-09 Score=91.43 Aligned_cols=94 Identities=19% Similarity=0.145 Sum_probs=75.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCCC-C-C-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENVP-R-G-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~p-~-~-D~ 268 (370)
..+..+|||||||+|..+..+++.+ +..+++++|. +.+++.+++ ..+++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 4567899999999999999999885 6679999998 887776653 2478999999876322 2 3 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|++...++++. +++.+.|+|||+|++....
T Consensus 155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence 99998887654 4688999999999997643
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-09 Score=100.22 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CCC-CC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NVP-RG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~p-~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|..+ +.+ .. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4568999999999999999999888889999998 888876653 3579999999865 222 33 9999
Q ss_pred ecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+....+..+.. ....++++++++|+|||.|++..
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 86544322211 12478999999999999999865
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=96.47 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=76.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC--C-C------CCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE--N-V------PRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~--~-~------p~~- 266 (370)
.++.+|||||||+|..+..+++.+| +.+++++|. +.+++.++++ ++++++.+|..+ + . +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 3567999999999999999999987 789999998 8888776542 479999999875 1 1 233
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++... ..+...+++.+.++|+|||.|++.+..
T Consensus 149 D~I~~d~~-----~~~~~~~l~~~~~~L~pGG~lv~d~~~ 183 (237)
T 3c3y_A 149 DFGFVDAD-----KPNYIKYHERLMKLVKVGGIVAYDNTL 183 (237)
T ss_dssp EEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred CEEEECCc-----hHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 99987532 334578999999999999999875543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-10 Score=95.26 Aligned_cols=97 Identities=15% Similarity=0.018 Sum_probs=74.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC-C-C---CC-CCEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE-N-V---PR-GDAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~-~-~---p~-~D~i~~ 271 (370)
+..+|||+|||+|.++..++.+. ..+++++|+ +.+++.++++ ++++++.+|+.+ . . .. .|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 35799999999999999877764 358999998 8888877642 478999999876 2 1 23 599999
Q ss_pred cccccCCChhHHHHHHHHH--HHhCCCCcEEEEEeecC
Q 017495 272 KWMLHGWTDEHCLKLLKNC--WEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~--~~~L~pgG~lli~e~~~ 307 (370)
...+| . .....+++.+ .++|+|||.+++.....
T Consensus 132 ~~~~~-~--~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 132 DPPFH-F--NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCCSS-S--CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCCC-C--ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 87755 2 3456788888 56799999999876644
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.6e-09 Score=97.93 Aligned_cols=98 Identities=19% Similarity=0.194 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----------------CCCCCeEEeccCCCC--CCCC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----------------SFPGVEHVGGDMFEN--VPRG 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----------------~~~rv~~~~~D~~~~--~p~~ 266 (370)
..+.+|||||||+|..+..+++. +..+++++|+ |.+++.++ ..++++++.+|..+. .+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 152 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 152 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence 35689999999999999999998 8889999998 88877654 235789999997651 1333
Q ss_pred -CEEEecccccCCChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 -DAIFLKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++....+..+... ...+++.++++|+|||.+++..
T Consensus 153 fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 153 FDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865543222122 2678999999999999999863
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.85 E-value=9.6e-10 Score=100.78 Aligned_cols=99 Identities=21% Similarity=0.156 Sum_probs=72.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC--C-CCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN--V-PRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~--~-p~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. . +.. |+|+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii 186 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 186 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence 3568999999999999999999878889999998 888876543 25789999998762 2 233 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+...-+..++... ..+++.++++|+|||.|++..
T Consensus 187 ~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 187 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 8554332122221 689999999999999999864
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=8e-10 Score=97.05 Aligned_cols=96 Identities=18% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C--C---CC-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V--P---RG-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~--p---~~-D~ 268 (370)
+..+|||||||+|..+..+++.+| +.+++++|. +..++.+++. ++++++.+|+.+. . + .. |+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 467999999999999999999987 789999998 8887776642 4699999997541 1 1 33 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++... .++...+++.+.+.|+|||.|++.+...
T Consensus 152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 987644 2345689999999999999999876554
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-09 Score=92.72 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=73.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC--CCCC-C-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE--NVPR-G-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~--~~p~-~-D~i~~~~vL 275 (370)
+..+|||+|||+|.++..++.+.. .+++++|. +.+++.++++ ++++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 357999999999999998777643 48999998 8888877642 479999999876 3333 3 999997775
Q ss_pred cCCChhHHHHHHHHHHH--hCCCCcEEEEEeecC
Q 017495 276 HGWTDEHCLKLLKNCWE--ALPENGKVIIVESIL 307 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~--~L~pgG~lli~e~~~ 307 (370)
| .. ....+++.+.+ +|+|||.+++.....
T Consensus 133 ~-~~--~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 133 R-RG--LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp S-TT--THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred C-CC--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 5 22 33567888876 499999999876643
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-09 Score=100.48 Aligned_cols=99 Identities=17% Similarity=0.074 Sum_probs=75.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCCC---CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFEN---VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~~---~p~~-D~i~ 270 (370)
..+.+|||||||+|..+..+++..|..+++++|+ +.+++.+++ .++++++.+|+.+. .+.. |+|+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi 194 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 194 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence 3568999999999999999998878889999998 888876543 25799999998762 2333 9999
Q ss_pred ecccccCCChhHH--HHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEHC--LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~~--~~iL~~~~~~L~pgG~lli~e 304 (370)
+...-+..+.... ..++++++++|+|||.+++..
T Consensus 195 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 195 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp EECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 8643221111221 589999999999999999853
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=4.3e-09 Score=91.20 Aligned_cols=96 Identities=9% Similarity=0.010 Sum_probs=78.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEeccccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~~vLh 276 (370)
...+.+|||||||+|-++..+. |..+++++|+ +.+++.+++. .+.++...|... +.|.. |++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3567899999999999998877 8999999999 8888877653 457889999988 44444 9999999999
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
++.+++....+ ++...|++++.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98776655555 8999999988777665
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.8e-09 Score=96.56 Aligned_cols=103 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~ 265 (370)
...++..+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 455666665 6677899999999999999999984 48899998 7777665431 478999999987 6665
Q ss_pred CCEEEecccccCCChhHHHHHHHH--------------H--HHhCCCCcEEE
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKN--------------C--WEALPENGKVI 301 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~--------------~--~~~L~pgG~ll 301 (370)
.|+|++ +..++|+.+....+|.. + +.+++|||+++
T Consensus 94 fD~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 94 FDTCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp CSEEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred hcEEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 598888 44445555555555532 2 46899999653
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-09 Score=95.54 Aligned_cols=98 Identities=16% Similarity=0.137 Sum_probs=79.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC-CCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN-VPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~-~p~~-D~i~~~~vL 275 (370)
+.+..+|||+|||+|.++..+++..+..+++++|. |.+++.++++ .++.++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 55678999999999999999999988889999998 8888877642 4688999999874 2223 999886543
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
....+++.+.+.|+|||.+++.+....
T Consensus 197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~ 223 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKDRGVIHYHETVAE 223 (272)
T ss_dssp ------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred ------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence 335789999999999999999887653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=99.69 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~ 277 (370)
+..+|||||||+|.++...++. .-.+++++|...+++.+++ .++|+++.+|+.+ ..|+. |+|++-..-+.
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~a-GA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~ 161 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQA-GARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYG 161 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-CCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccc
Confidence 4679999999999998876664 3458999997545555543 2679999999988 67766 99988433322
Q ss_pred CC-hhHHHHHHHHHHHhCCCCcEEEE
Q 017495 278 WT-DEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 278 ~~-d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+. ......++....+.|+|||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 22 22456888888999999998874
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-09 Score=97.43 Aligned_cols=97 Identities=23% Similarity=0.230 Sum_probs=72.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--CC-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--NV-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~~-p~~-D~i~~ 271 (370)
.+.+|||||||+|..+..+++..+..+++++|+ +.+++.+++ .++++++.+|+.+ +. +.. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 458999999999999999999878889999998 888776543 2579999999865 22 233 99997
Q ss_pred cccccCCChh---HHHHHHHHHHHhCCCCcEEEEE
Q 017495 272 KWMLHGWTDE---HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 272 ~~vLh~~~d~---~~~~iL~~~~~~L~pgG~lli~ 303 (370)
...-+..... ....++++++++|+|||.|++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 4332201111 1158899999999999999985
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=87.10 Aligned_cols=88 Identities=17% Similarity=0.193 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCCC-CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~ 281 (370)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++++ .+++++.+|+.+ .+.. |+|++...+|++.+.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345689999999999999999886 5557999998 8888877653 279999999886 3344 999999999998765
Q ss_pred HHHHHHHHHHHhC
Q 017495 282 HCLKLLKNCWEAL 294 (370)
Q Consensus 282 ~~~~iL~~~~~~L 294 (370)
....+++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5568899999998
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=91.94 Aligned_cols=115 Identities=11% Similarity=0.050 Sum_probs=81.9
Q ss_pred CCCCCeEEEEcC------cccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCCCCCeE-EeccCCC-CCCCC-CEEEecc
Q 017495 205 FDGLKVLVDVGG------GIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSFPGVEH-VGGDMFE-NVPRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~------G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~~rv~~-~~~D~~~-~~p~~-D~i~~~~ 273 (370)
.++..+|||+|| |+|. ..+++..| +.+++++|+ +. + .++++ +.+|+.+ +.+.. |+|++..
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------~~v~~~i~gD~~~~~~~~~fD~Vvsn~ 131 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------SDADSTLIGDCATVHTANKWDLIISDM 131 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------CSSSEEEESCGGGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------CCCEEEEECccccCCccCcccEEEEcC
Confidence 567789999999 4476 44566666 689999998 55 2 47999 9999987 44444 9999864
Q ss_pred cccC--------C-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 274 MLHG--------W-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 274 vLh~--------~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
..+. . ..+....+|+.++++|||||+|++..+... ...++.+
T Consensus 132 ~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~-----------------------------~~~~l~~ 182 (290)
T 2xyq_A 132 YDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS-----------------------------WNADLYK 182 (290)
T ss_dssp CCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------CCHHHHH
T ss_pred CccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------CHHHHHH
Confidence 3221 0 112345899999999999999998643211 1236778
Q ss_pred HHHhCCCCcceEE
Q 017495 345 LAKNSGFSGLEIV 357 (370)
Q Consensus 345 ll~~aGf~~v~~~ 357 (370)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877665
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.3e-09 Score=104.49 Aligned_cols=102 Identities=15% Similarity=0.113 Sum_probs=80.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC---CCCC--CCEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE---NVPR--GDAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~---~~p~--~D~i~~~~ 273 (370)
.++.+|||||||.|.++..|++. +..++++|. +..++.|+.+ .+|++.++++.+ ..+. .|+|++..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e 142 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLS 142 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEES
T ss_pred CCCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECc
Confidence 35689999999999999999995 678999998 8888776532 258999999875 2332 39999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
+|||+++++....+..+.+.|.++|+.++...+..+
T Consensus 143 ~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e 178 (569)
T 4azs_A 143 VFHHIVHLHGIDEVKRLLSRLADVTQAVILELAVKE 178 (569)
T ss_dssp CHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCCTT
T ss_pred chhcCCCHHHHHHHHHHHHHhccccceeeEEecccc
Confidence 999998887555566777888888887777665443
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.76 E-value=9.2e-09 Score=91.81 Aligned_cols=89 Identities=18% Similarity=0.079 Sum_probs=73.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCCCCCCC-CEEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFENVPRG-DAIFLKW 273 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~~~p~~-D~i~~~~ 273 (370)
+.+.+|||||||+|..+..+++. + .+++++|+ +.+++.++++ ++++++.+|..+.. .. |+|++.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d- 146 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL- 146 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES-
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC-
Confidence 35689999999999999999988 7 89999999 9999988753 47899999987633 33 999986
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+++. .+++.++++|+|||.+++..
T Consensus 147 ----~~dp~--~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 ----QEPDI--HRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ----SCCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred ----CCChH--HHHHHHHHhcCCCcEEEEEc
Confidence 23342 48999999999999999853
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=4.2e-08 Score=93.70 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=78.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC-CC-CEEEe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP-RG-DAIFL 271 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p-~~-D~i~~ 271 (370)
..+++.+. ..+..+|||+|||+|.++..+++++ +..+++++|+ +.+++.+ .+++++.+|+.+..+ .. |+|++
T Consensus 29 ~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~ 104 (421)
T 2ih2_A 29 DFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG 104 (421)
T ss_dssp HHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred HHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence 34444444 3445699999999999999999887 6789999998 8877766 579999999987433 33 99999
Q ss_pred cc--c-c-------cCCChhHH-----------------HHHHHHHHHhCCCCcEEEEEee
Q 017495 272 KW--M-L-------HGWTDEHC-----------------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~~--v-L-------h~~~d~~~-----------------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+- . . +|++++.. ..+++.+.+.|+|||+++++.+
T Consensus 105 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 105 NPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp CCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 41 1 1 11223321 2679999999999999998765
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-08 Score=92.14 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=76.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC-----CCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV-----PRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~-----p~~-D~i 269 (370)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 556789999999999999999998877 78999998 7777765432 478999999876 22 333 999
Q ss_pred Eec------ccccC---CChh-------HHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 270 FLK------WMLHG---WTDE-------HCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 270 ~~~------~vLh~---~~d~-------~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
++. .+++. |+.+ ....+|+++.+.|||||+|++.....
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 885 22221 1111 12689999999999999999977654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.8e-08 Score=91.83 Aligned_cols=122 Identities=15% Similarity=0.064 Sum_probs=90.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCC-C-CEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPR-G-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~-~-D~i~~~~ 273 (370)
+.+..+|||+|||+|.++..++...+..+++++|+ +.+++.++++ ++++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 56778999999999999999999887778999998 8888877653 479999999988 5543 3 9999954
Q ss_pred cccCCC-----hhH-HHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 274 MLHGWT-----DEH-CLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 274 vLh~~~-----d~~-~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
..+... -++ -..+++.++++| ||.++++.. +.+.+++.+.
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--------------------------------~~~~~~~~~~ 340 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT--------------------------------EKKAIEEAIA 340 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES--------------------------------CHHHHHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC--------------------------------CHHHHHHHHH
Confidence 433211 111 257889999988 555555321 2455777889
Q ss_pred hCCCCcceEEecC
Q 017495 348 NSGFSGLEIVCCA 360 (370)
Q Consensus 348 ~aGf~~v~~~~~~ 360 (370)
+.||+..+...+.
T Consensus 341 ~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 341 ENGFEIIHHRVIG 353 (373)
T ss_dssp HTTEEEEEEEEEE
T ss_pred HcCCEEEEEEEEE
Confidence 9999988877764
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.3e-08 Score=96.37 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=80.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CC-CC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VP-RG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p-~~-D~i~~ 271 (370)
..+..+|||+|||+|..+..+++..++ .+++++|. +..++.++++ .+++++.+|+.+ + ++ .. |+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 567789999999999999999999887 79999998 7777655432 468999999987 3 44 33 99996
Q ss_pred ------cccccCCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 272 ------KWMLHGWTDE-------HC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 272 ------~~vLh~~~d~-------~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
..+++..++. +. ..+|+++.+.|||||+|++.+....
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3455544432 11 5789999999999999999876553
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=81.54 Aligned_cols=88 Identities=16% Similarity=0.046 Sum_probs=69.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----C-CCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----P-GVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~-rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
..+..+|||+|||+|.++..+++.. ..+++++|. +.+++.+++. . +++++.+|+.+ .+.. |+|++.-.+|.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~ 124 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGS 124 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSS
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcc
Confidence 3456799999999999999998863 347999998 8888776543 1 68999999887 2334 99999888887
Q ss_pred CChhHHHHHHHHHHHhC
Q 017495 278 WTDEHCLKLLKNCWEAL 294 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L 294 (370)
+.......+|+.+.+.+
T Consensus 125 ~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 125 QRKHADRPFLLKAFEIS 141 (207)
T ss_dssp SSTTTTHHHHHHHHHHC
T ss_pred ccCCchHHHHHHHHHhc
Confidence 76555568899999998
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=88.11 Aligned_cols=104 Identities=11% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~-~D 267 (370)
...+++.+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 445666555 5677899999999999999999986 68999998 777776543 2689999999988 6664 35
Q ss_pred EEEecccccCCChhHHHHHH--------------HHHHHhCCCCcEEE
Q 017495 268 AIFLKWMLHGWTDEHCLKLL--------------KNCWEALPENGKVI 301 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL--------------~~~~~~L~pgG~ll 301 (370)
.+++.+.-++++.+-...++ ..+.+.++|+|.+.
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~ 143 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA 143 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred eEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence 55566666655544333433 33667777776543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=90.02 Aligned_cols=120 Identities=12% Similarity=0.100 Sum_probs=89.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~--D~i~~~~v 274 (370)
.+++.+|||+|||+|.++..+++. +..+++++|+ |..++.++++ ++++++.+|..+-.++. |.|++..-
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~-g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 456789999999999999999886 4568999998 8888876642 67999999998733333 98887532
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
. ....+|..+.++|+|||.|.+.+.+..+. ......+.++++.++.|+++.
T Consensus 202 ~------~~~~~l~~a~~~lk~gG~ih~~~~~~e~~-----------------------~~~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 252 (278)
T ss_dssp S------SGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred C------cHHHHHHHHHHHcCCCCEEEEEeeecccc-----------------------cchhHHHHHHHHHHHcCCcEE
Confidence 1 23467888999999999998877654321 001235678888899998753
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.67 E-value=2.1e-08 Score=93.23 Aligned_cols=100 Identities=10% Similarity=0.111 Sum_probs=79.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCC-----CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCC-CC-CEEEec
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPC-----IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVP-RG-DAIFLK 272 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p-~~-D~i~~~ 272 (370)
.+..+|||+|||+|.++..+++..+. .+++++|+ +.+++.++.. .++.++.+|.+.+.+ .. |+|++.
T Consensus 129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N 208 (344)
T 2f8l_A 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 208 (344)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence 35679999999999999999988765 68899998 8887776542 268999999988544 33 999998
Q ss_pred ccccCCChhHH----------------HHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGWTDEHC----------------LKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d~~~----------------~~iL~~~~~~L~pgG~lli~e~ 305 (370)
--+++++.++. ..+++++.+.|+|||+++++.+
T Consensus 209 PPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 209 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 77666654432 2689999999999999998664
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-07 Score=85.98 Aligned_cols=150 Identities=19% Similarity=0.190 Sum_probs=94.4
Q ss_pred CCeEEEEcCcccHHHHHH--------HhhC-------CCCeEEEeehhhH--------HHhCCC----------C-CC--
Q 017495 208 LKVLVDVGGGIGVTLGMI--------TSRY-------PCIKGISFDLPHV--------LANAPS----------F-PG-- 251 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l--------~~~~-------p~~~~~~~D~p~~--------~~~a~~----------~-~r-- 251 (370)
..+|+|+|||+|..+..+ .+++ |..+++.-|+|.- +....+ . .+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 579999999999998876 3333 7788888897531 111111 0 01
Q ss_pred -CeEEeccCCC-CCCCC--CEEEecccccCCChh------------------------------------HHHHHHHHHH
Q 017495 252 -VEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDE------------------------------------HCLKLLKNCW 291 (370)
Q Consensus 252 -v~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~------------------------------------~~~~iL~~~~ 291 (370)
+.-+.+.+.. .+|.. |+|+++.+||.+++. +...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346666666 67765 999999999987621 3345799999
Q ss_pred HhCCCCcEEEEEeecCCCCCCCCccchhhhhh-hh----HH-hhhc------------CCCcccCHHHHHHHHH-hCCCC
Q 017495 292 EALPENGKVIIVESILPLVPENQASSHIVFEQ-DL----FM-LAQT------------TGGRERSKKEYEALAK-NSGFS 352 (370)
Q Consensus 292 ~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~-d~----~~-~~~~------------~~~~~~t~~e~~~ll~-~aGf~ 352 (370)
+.|+|||++++.-...++...... ......+ +. +. +... ..-..++.+|++++++ +.||+
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~ 291 (374)
T 3b5i_A 213 AEVKRGGAMFLVCLGRTSVDPTDQ-GGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFA 291 (374)
T ss_dssp HHEEEEEEEEEEEEECCCSSTTCC-HHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEE
T ss_pred HHhCCCCEEEEEEecCCCCccccc-cchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcE
Confidence 999999999998886654211100 0000011 11 10 1100 0112368999999998 59999
Q ss_pred cceEEe
Q 017495 353 GLEIVC 358 (370)
Q Consensus 353 ~v~~~~ 358 (370)
+..+.-
T Consensus 292 I~~le~ 297 (374)
T 3b5i_A 292 IDKLVV 297 (374)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 877644
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.64 E-value=8.3e-09 Score=91.26 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=79.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCC-CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPR-GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~-~D 267 (370)
...+++.+. ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. ++++++.+|+.+ +.+. ..
T Consensus 18 ~~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 94 (245)
T 1yub_A 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCC
Confidence 345555555 6677899999999999999999985 78999998 8888877764 468999999988 5553 33
Q ss_pred EEEecccccCCChhHHHHHH--------------HHHHHhCCCCcEEEEEee
Q 017495 268 AIFLKWMLHGWTDEHCLKLL--------------KNCWEALPENGKVIIVES 305 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL--------------~~~~~~L~pgG~lli~e~ 305 (370)
.+++.+.-++.+++....++ +.+.+.|+|||++.+...
T Consensus 95 f~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 95 YKIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred cEEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 44555555555544444443 668999999999877543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.58 E-value=8.5e-08 Score=88.57 Aligned_cols=96 Identities=14% Similarity=0.090 Sum_probs=73.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------C-CCeEEeccCCCCC------CC-CCEEE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------P-GVEHVGGDMFENV------PR-GDAIF 270 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~D~~~~~------p~-~D~i~ 270 (370)
+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ + +++++.+|+++.. .. .|+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 45799999999999999999854 49999998 8888877642 2 4899999987721 22 39999
Q ss_pred ecc----------cccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 271 LKW----------MLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 271 ~~~----------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+.- +++. .++...+++.+.++|+|||.|++....
T Consensus 231 ~dPP~~~~~~~~~~~~~--~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL--FDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEH--HHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHH--HHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 832 1121 234568999999999999998876654
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-07 Score=91.39 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CCC-C-CEEEe--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VPR-G-DAIFL-- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p~-~-D~i~~-- 271 (370)
..+..+|||+|||+|..+.++++..++.+++++|. +..++.++++ -+++++.+|+.+. ++. . |+|++
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 56678999999999999999999998889999998 7766655432 2588999998872 333 3 99986
Q ss_pred ----cccccCCChh-------HH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ----KWMLHGWTDE-------HC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ----~~vLh~~~d~-------~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..++++.++. +. ..+|+++.+.|||||+|++.+...
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 2345543331 11 488999999999999999987654
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=86.64 Aligned_cols=100 Identities=17% Similarity=0.283 Sum_probs=71.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +.+..
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 345555555 667789999999999999999986 468999998 877776653 2579999999987 55545
Q ss_pred CEEEecccccCCChhHHHHHH---------------HHHHHhCCCCc
Q 017495 267 DAIFLKWMLHGWTDEHCLKLL---------------KNCWEALPENG 298 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL---------------~~~~~~L~pgG 298 (370)
|+|++. ..+++..+....+| ..+.+.++|+|
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 998874 45556766666666 34678888877
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.7e-08 Score=93.81 Aligned_cols=102 Identities=10% Similarity=0.043 Sum_probs=77.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEe-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFL- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~- 271 (370)
..+..+|||+|||+|..+..+++..++ .+++++|+ +..++.++++ . +.++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998875 68999998 8887776542 4 8899999766 2 2333 99986
Q ss_pred ------------cccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 ------------KWMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ------------~~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
..+...|+.++. ..+|+.+.+.|||||+|+......
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 122223333333 679999999999999999876544
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=90.75 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=77.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEec--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFLK-- 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~~-- 272 (370)
+..+|||+|||+|..+..+++..+ ..+++++|+ +..++.++++ .++.++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 678999999999999999999875 478999998 7777766542 468999999887 3 3344 999971
Q ss_pred ----ccc-------cCCChhH-------HHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 ----WML-------HGWTDEH-------CLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ----~vL-------h~~~d~~-------~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.++ ++|+.++ -.++|+.+.++|||||+|++.....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 223 2344332 2478999999999999999877644
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.50 E-value=7.2e-07 Score=82.19 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=104.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------------------------CCCCeEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------------------------FPGVEHVGGD 258 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------------------------~~rv~~~~~D 258 (370)
.+...|+.+|||.......|...+++++++-+|+|++++..++ .+++.++..|
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D 175 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 175 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence 3568999999999999999998888999999999988775432 1578999999
Q ss_pred CCC-CC---------C-CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh--h
Q 017495 259 MFE-NV---------P-RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ--D 324 (370)
Q Consensus 259 ~~~-~~---------p-~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~--d 324 (370)
+.+ .+ . .. .++++-.+|++++.+++.++|+.+.+.+ |+|.+++.|.+.+..+.. .+...+ .
T Consensus 176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~----~fg~~m~~~ 250 (334)
T 1rjd_A 176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPND----RFGAIMQSN 250 (334)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTC----CHHHHHHHH
T ss_pred CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcc----hHHHHHHHH
Confidence 987 32 1 22 7888899999999999999999999988 788888899987732211 111111 1
Q ss_pred hHH-hhh-cCC-CcccCHHHHHHHHHhCCCC
Q 017495 325 LFM-LAQ-TTG-GRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 325 ~~~-~~~-~~~-~~~~t~~e~~~ll~~aGf~ 352 (370)
+.. ... ..+ ....+.++..+.|.++||+
T Consensus 251 l~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 251 LKESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hhcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 110 000 001 1335889999999999997
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-06 Score=78.28 Aligned_cols=151 Identities=17% Similarity=0.101 Sum_probs=92.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhh----------------CCCCeEEEeehhh--HHHhCCCCC------C---CeEEecc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSR----------------YPCIKGISFDLPH--VLANAPSFP------G---VEHVGGD 258 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~----------------~p~~~~~~~D~p~--~~~~a~~~~------r---v~~~~~D 258 (370)
+...+|+|+||++|..+..+... .|...++.-|+|. .-...+..+ + +.-+.+.
T Consensus 50 ~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgS 129 (359)
T 1m6e_X 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchh
Confidence 34578999999999877654443 4667788889742 111111111 2 2335666
Q ss_pred CCC-CCCCC--CEEEecccccCCChh-------------------------------HHHHHHHHHHHhCCCCcEEEEEe
Q 017495 259 MFE-NVPRG--DAIFLKWMLHGWTDE-------------------------------HCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 259 ~~~-~~p~~--D~i~~~~vLh~~~d~-------------------------------~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|.. .+|.. |+|++++.||.+++. +-..+|+..++.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 766 67765 999999999976541 22456999999999999999988
Q ss_pred ecCCCCCCCC-----ccch-hhhhhhhHHhhh---------cCCCcccCHHHHHHHHHhCCC-CcceE
Q 017495 305 SILPLVPENQ-----ASSH-IVFEQDLFMLAQ---------TTGGRERSKKEYEALAKNSGF-SGLEI 356 (370)
Q Consensus 305 ~~~~~~~~~~-----~~~~-~~~~~d~~~~~~---------~~~~~~~t~~e~~~ll~~aGf-~~v~~ 356 (370)
...++..... .... ...+.++..-.. ...-..++.+|++++++++|+ ++..+
T Consensus 210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~ 277 (359)
T 1m6e_X 210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence 7665531100 0000 111111110000 001224589999999999965 66654
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.6e-06 Score=80.92 Aligned_cols=150 Identities=17% Similarity=0.098 Sum_probs=91.4
Q ss_pred CCeEEEEcCcccHHHHHHHhh-----------------CCCCeEEEeehhh------------HHHhC----CCCCCCeE
Q 017495 208 LKVLVDVGGGIGVTLGMITSR-----------------YPCIKGISFDLPH------------VLANA----PSFPGVEH 254 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~-----------------~p~~~~~~~D~p~------------~~~~a----~~~~rv~~ 254 (370)
..+|+|+||++|..+..+... .|.+.++.-|+|. ..+.. ....+-.|
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 689999999999999887766 4677788889771 11110 01112234
Q ss_pred ---EeccCCC-CCCCC--CEEEecccccCCChhH-------------------------H------------HHHHHHHH
Q 017495 255 ---VGGDMFE-NVPRG--DAIFLKWMLHGWTDEH-------------------------C------------LKLLKNCW 291 (370)
Q Consensus 255 ---~~~D~~~-~~p~~--D~i~~~~vLh~~~d~~-------------------------~------------~~iL~~~~ 291 (370)
+.+.|.. .+|.. |+|+++++||.+++.. + ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 57765 9999999999765321 1 12388889
Q ss_pred HhCCCCcEEEEEeecCCCC--CCCCccchhhhhhhhHHhh---------hcCCCcccCHHHHHHHHHhCC-CCcceEE
Q 017495 292 EALPENGKVIIVESILPLV--PENQASSHIVFEQDLFMLA---------QTTGGRERSKKEYEALAKNSG-FSGLEIV 357 (370)
Q Consensus 292 ~~L~pgG~lli~e~~~~~~--~~~~~~~~~~~~~d~~~~~---------~~~~~~~~t~~e~~~ll~~aG-f~~v~~~ 357 (370)
+.|+|||++++.-...++. ...........+.++..-. ....-..++.+|++++++++| |++..+.
T Consensus 213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le 290 (384)
T 2efj_A 213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE 290 (384)
T ss_dssp HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence 9999999999988766543 1110000111111111000 000122368999999999985 7777654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-07 Score=90.51 Aligned_cols=103 Identities=14% Similarity=0.126 Sum_probs=75.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-C--CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-N--VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~--~p~~-D~i~~~ 272 (370)
..+..+|||+|||+|..+.++++..++ .+++++|+ +..++.++++ .++.++.+|..+ . .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 556789999999999999999998664 68999998 7777766542 468888898765 2 3334 999872
Q ss_pred c------cccC-------CChhHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 273 W------MLHG-------WTDEHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 273 ~------vLh~-------~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
- ++.. |+.++. ..+|+.+.+.|||||+|+......
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 1 2222 221111 278999999999999999876654
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.37 E-value=6.1e-07 Score=84.67 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=79.6
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEE
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGI 235 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 235 (370)
.+..++.... +.+...|||.+||+|.+++..+....+ .+++
T Consensus 189 lAa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~ 267 (393)
T 3k0b_A 189 MAAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNII 267 (393)
T ss_dssp HHHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEE
Confidence 3445555555 888899999999999999988766443 5699
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEec--ccccCCChhHHHHHHHHHHHhCCC--CcEEE
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLK--WMLHGWTDEHCLKLLKNCWEALPE--NGKVI 301 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~--~vLh~~~d~~~~~iL~~~~~~L~p--gG~ll 301 (370)
++|. +.+++.++.+ ++++++.+|+.+ +.+.. |+|+++ +....-..++...+.+.+.+.|++ ||.++
T Consensus 268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 9998 8888877642 469999999988 44444 999987 322211124455667777777765 89988
Q ss_pred EEee
Q 017495 302 IVES 305 (370)
Q Consensus 302 i~e~ 305 (370)
++..
T Consensus 348 iit~ 351 (393)
T 3k0b_A 348 VLTS 351 (393)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=77.42 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC--CE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG--DA 268 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~--D~ 268 (370)
...+++.+. ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.+++. .+++++.+|+.+ +++.. +.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 445666665 667789999999999999999986 4578999998 8888877654 578999999988 55542 56
Q ss_pred EEecccccCCChhHHHHHH
Q 017495 269 IFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL 287 (370)
+++.+.-++.+.+-...+|
T Consensus 98 ~vv~NlPy~i~~~il~~ll 116 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTV 116 (249)
T ss_dssp EEEEECCTTTHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHH
Confidence 7777777776654333333
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.34 E-value=3e-07 Score=88.48 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=78.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEEEeeh-hhHHHhCCCC------C--CCe
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGISFDL-PHVLANAPSF------P--GVE 253 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~~------~--rv~ 253 (370)
..+++.+. .....+|+|.|||+|.++..+.+.. +..+++++|+ +.+++.++.. . +++
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34444444 4456799999999999999988764 4567999998 8777766431 2 688
Q ss_pred EEeccCCC-CCCCC-CEEEecccccCCChh---------------HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 254 HVGGDMFE-NVPRG-DAIFLKWMLHGWTDE---------------HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 254 ~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~---------------~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+..+|.+. +.... |+|+++--++..... .-..+++.+.+.|+|||++.++-+
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 99999987 33334 999997555442211 124789999999999999998764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-07 Score=88.22 Aligned_cols=98 Identities=13% Similarity=0.023 Sum_probs=74.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCC------CCC-CEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENV------PRG-DAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~------p~~-D~i~~~ 272 (370)
+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ .+++++.+|+.+.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5679999999999999999987 568999998 8888877642 34899999987621 233 999984
Q ss_pred ccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 273 WMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 273 ~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
---+..+. .....+++.+.+.|+|||.|++....
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 327 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS 327 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22111111 34568999999999999999987653
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=81.21 Aligned_cols=111 Identities=13% Similarity=0.000 Sum_probs=82.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEE
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGI 235 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~ 235 (370)
.+..++.... |.+...|+|.+||+|.+++..+....+ .+++
T Consensus 182 LAaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~ 260 (384)
T 3ldg_A 182 MAAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDIS 260 (384)
T ss_dssp HHHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEE
T ss_pred HHHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEE
Confidence 3445555555 888899999999999999988765443 5699
Q ss_pred Eeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEec--ccccCCChhHHHHHHHHHHHhCCC--CcEEE
Q 017495 236 SFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLK--WMLHGWTDEHCLKLLKNCWEALPE--NGKVI 301 (370)
Q Consensus 236 ~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~--~vLh~~~d~~~~~iL~~~~~~L~p--gG~ll 301 (370)
++|. +.+++.++.+ +++++..+|+.+ +.+.. |+|+++ +...--..++...+.+.+.+.|++ ||.+.
T Consensus 261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 9998 8888877652 469999999988 44444 999986 322212335667888888888886 99988
Q ss_pred EEee
Q 017495 302 IVES 305 (370)
Q Consensus 302 i~e~ 305 (370)
++..
T Consensus 341 iit~ 344 (384)
T 3ldg_A 341 ILTN 344 (384)
T ss_dssp EEES
T ss_pred EEEC
Confidence 8754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.33 E-value=2.4e-07 Score=87.75 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=74.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C-CCeEEeccCCCCC------CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P-GVEHVGGDMFENV------PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~-rv~~~~~D~~~~~------p~~-D~i~~ 271 (370)
+..+|||+|||+|.++..+++. +..+++++|. +.+++.++++ . +++++.+|+.+.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 6689999999999999999986 4458999998 8888776642 2 7899999987621 223 99998
Q ss_pred cccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 272 KWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 272 ~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.--.+..+. .....++..+.+.|+|||.|++....
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 337 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 422111111 34568999999999999999887653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=79.37 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=65.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR--G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~--~ 266 (370)
...++..+. ..+..+|||||||+|.++..+++. ..+++++|+ +.+++.+++ .++++++.+|+.+ +++. .
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 455666665 667789999999999999999997 468899998 877776654 2689999999998 6665 3
Q ss_pred CEEEecccccCCChhHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL 287 (370)
|+|+++ .-++++.+-...+|
T Consensus 116 D~Iv~N-lPy~is~pil~~lL 135 (295)
T 3gru_A 116 NKVVAN-LPYQISSPITFKLI 135 (295)
T ss_dssp SEEEEE-CCGGGHHHHHHHHH
T ss_pred cEEEEe-CcccccHHHHHHHH
Confidence 988865 44444544333333
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-06 Score=82.93 Aligned_cols=98 Identities=13% Similarity=0.060 Sum_probs=70.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCC---CCC-CCEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFEN---VPR-GDAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~---~p~-~D~i~~~~vLh 276 (370)
+..+|||+|||+|.++..+++. +.+++++|+ +.+++.++++ -..++..+|+++. .+. .|+|++.--..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 4789999999999999999986 345999998 8888877653 1235778888762 222 39998843211
Q ss_pred CCCh-------hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 277 GWTD-------EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 277 ~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
..+. .....+++.+.+.|+|||.|++....
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s 328 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS 328 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1111 23358899999999999999976654
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4e-07 Score=84.28 Aligned_cols=93 Identities=16% Similarity=0.164 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCCCEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRGDAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++.. ++ ...+++++|. +.+++.++++ ++++++.+|+.+.....|+|++.--
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP--- 267 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLP--- 267 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCT---
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCc---
Confidence 4678999999999999999 76 5778999998 8888876642 4799999999874422399998421
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.....+++.+.+.|+|||.|++.+...
T Consensus 268 ---~~~~~~l~~~~~~L~~gG~l~~~~~~~ 294 (336)
T 2yx1_A 268 ---KFAHKFIDKALDIVEEGGVIHYYTIGK 294 (336)
T ss_dssp ---TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred ---HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence 112378999999999999999977643
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=74.43 Aligned_cols=107 Identities=9% Similarity=-0.020 Sum_probs=67.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehh-hHHHhCCCC----CCCeEEeccCCC-CCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP-HVLANAPSF----PGVEHVGGDMFE-NVPR--G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p-~~~~~a~~~----~rv~~~~~D~~~-~~p~--~ 266 (370)
+.++.+... +++..+|||+|||+|.++...++..+..+++++|+. +........ .++.....++.. .++. .
T Consensus 63 L~ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKC 141 (277)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCc
Confidence 455666543 677789999999999999988876555566666652 221111111 133444454422 3333 3
Q ss_pred CEEEeccccc---CCChh-HHHHHHHHHHHhCCCC-cEEEE
Q 017495 267 DAIFLKWMLH---GWTDE-HCLKLLKNCWEALPEN-GKVII 302 (370)
Q Consensus 267 D~i~~~~vLh---~~~d~-~~~~iL~~~~~~L~pg-G~lli 302 (370)
|+|++....+ ++.|. ....+|+-+.+.|+|| |.+++
T Consensus 142 DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~ 182 (277)
T 3evf_A 142 DTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV 182 (277)
T ss_dssp SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 9999977555 12222 2235689999999999 99998
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.2e-07 Score=86.56 Aligned_cols=99 Identities=18% Similarity=0.098 Sum_probs=72.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------C--CCeEEeccCCCCC------CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------P--GVEHVGGDMFENV------PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~--rv~~~~~D~~~~~------p~~-D~i 269 (370)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+++.. ... |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 456799999999999999999852 348999998 8888877642 2 7899999987621 123 999
Q ss_pred Eecccc-----cCCCh--hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWML-----HGWTD--EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vL-----h~~~d--~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++.--. ++..+ .....+++.+.+.|+|||.|++...
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 983221 11111 2344688899999999999988654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.9e-06 Score=76.92 Aligned_cols=91 Identities=13% Similarity=0.060 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---CCCCeEEeccCCC-CCCC--CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---FPGVEHVGGDMFE-NVPR--GD 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~D~~~-~~p~--~D 267 (370)
...+++.+. ..+. +|||||||+|.++..|++.. .+++++|+ +.+++.+++ ..+++++.+|+.+ +++. ..
T Consensus 36 ~~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~ 111 (271)
T 3fut_A 36 LRRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQG 111 (271)
T ss_dssp HHHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTT
T ss_pred HHHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCc
Confidence 445666665 6667 99999999999999999975 67888887 777776543 2579999999988 5553 23
Q ss_pred EEEecccccCCChhHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
.++..+.-++.+.+-...+|..
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH
T ss_pred cEEEecCcccccHHHHHHHhcC
Confidence 3455667777777655555544
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.1e-07 Score=83.31 Aligned_cols=110 Identities=17% Similarity=0.080 Sum_probs=80.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--------------------------------------CeEEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--------------------------------------IKGIS 236 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--------------------------------------~~~~~ 236 (370)
...++.... +.+..+|||++||+|.+++.++....+ .++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 444555454 778899999999999999988776332 57999
Q ss_pred eeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCC-CEEEecccccC-CC-hhHHHHHHHHHHHhCCC--CcEEEE
Q 017495 237 FDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRG-DAIFLKWMLHG-WT-DEHCLKLLKNCWEALPE--NGKVII 302 (370)
Q Consensus 237 ~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~-~~-d~~~~~iL~~~~~~L~p--gG~lli 302 (370)
+|+ +.+++.++.+ +++++..+|+.+ +.+.. |+|+++--... +. .++...+.+.+.+.|++ |+.+.+
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i 342 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL 342 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence 998 9999887753 368999999988 44443 99998433221 11 24566777877778876 888888
Q ss_pred Eee
Q 017495 303 VES 305 (370)
Q Consensus 303 ~e~ 305 (370)
+..
T Consensus 343 it~ 345 (385)
T 3ldu_A 343 ITS 345 (385)
T ss_dssp EES
T ss_pred EEC
Confidence 654
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-06 Score=81.24 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=70.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC----
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---- 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---- 264 (370)
..+++.+. ..+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ .+++|+.+|+.+..+
T Consensus 276 ~~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~ 352 (433)
T 1uwv_A 276 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 352 (433)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhh
Confidence 34444444 556789999999999999999986 678999998 8888877642 479999999987322
Q ss_pred -C-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 265 -R-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 265 -~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
. . |+|++.- |...+..+++.+.+ ++|++.+++.
T Consensus 353 ~~~~fD~Vv~dP-----Pr~g~~~~~~~l~~-~~p~~ivyvs 388 (433)
T 1uwv_A 353 AKNGFDKVLLDP-----ARAGAAGVMQQIIK-LEPIRIVYVS 388 (433)
T ss_dssp GTTCCSEEEECC-----CTTCCHHHHHHHHH-HCCSEEEEEE
T ss_pred hcCCCCEEEECC-----CCccHHHHHHHHHh-cCCCeEEEEE
Confidence 2 2 9998732 22112345555544 6888877763
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.2e-06 Score=78.56 Aligned_cols=100 Identities=18% Similarity=0.154 Sum_probs=75.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCCCC--C-CC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFENV--P-RG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~~~--p-~~-D~i 269 (370)
+.+++||=||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|..+-. . +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4678999999999999999998777778999999 999887654 268999999998822 2 23 999
Q ss_pred EecccccCCChh--HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++-..=..-+.. -...+++.++++|+|||.++..-.
T Consensus 162 i~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~ 199 (294)
T 3o4f_A 162 ISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG 199 (294)
T ss_dssp EESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence 874321100000 013789999999999999998543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.5e-07 Score=85.32 Aligned_cols=98 Identities=18% Similarity=0.088 Sum_probs=73.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------C-CCeEEeccCCCCC------CCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------P-GVEHVGGDMFENV------PRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~-rv~~~~~D~~~~~------p~~-D~i 269 (370)
.+..+|||+|||+|.++..+++.. ..+++++|. +.+++.++++ . +++++.+|+++.. ... |+|
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~I 297 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEE
Confidence 356799999999999999999864 458999998 8888776542 2 6889999987621 223 999
Q ss_pred Eeccc--------ccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKWM--------LHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~v--------Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++.-- ++... .....++..+.+.|+|||.|++...
T Consensus 298 i~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 298 VMDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp EECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 98521 11111 3457899999999999999998654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.1e-06 Score=86.98 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=81.3
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcC---CCCCCeEEEEcCcccHHHHHHHhh---C-CCCeEEEeehhh
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRG---FDGLKVLVDVGGGIGVTLGMITSR---Y-PCIKGISFDLPH 241 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~---~~~~~~vLDvG~G~G~~~~~l~~~---~-p~~~~~~~D~p~ 241 (370)
.|+-+++++-....|.+++.. .+.+.... ..+...|||||||+|-+....+++ . -.+++++++...
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 477778887666666665532 33332221 224468999999999884433333 2 234778898733
Q ss_pred HHHhCCC-------CCCCeEEeccCCC-CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEE
Q 017495 242 VLANAPS-------FPGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVI 301 (370)
Q Consensus 242 ~~~~a~~-------~~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~ll 301 (370)
+...+++ .++|+++.+|+.+ ..|+. |+|++-..=+.+.-+-...+|....+.|||||.++
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4333332 2689999999999 77876 99987443333323334567888889999999864
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=80.40 Aligned_cols=90 Identities=17% Similarity=0.083 Sum_probs=66.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC-CEEEecccccC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG-DAIFLKWMLHG 277 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~-D~i~~~~vLh~ 277 (370)
.+..+|||+|||+|.++..+++. ..+++++|. +.+++.++++ . ++++.+|+.+..+.. |+|++.---..
T Consensus 289 ~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 289 VEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAG 365 (425)
T ss_dssp CCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTC
T ss_pred CCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccc
Confidence 35679999999999999999985 458999998 8888877643 3 899999998844334 99998433222
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.. ..+++.+. .|+|+|.+++.
T Consensus 366 ~~----~~~~~~l~-~l~p~givyvs 386 (425)
T 2jjq_A 366 LH----PRLVKRLN-REKPGVIVYVS 386 (425)
T ss_dssp SC----HHHHHHHH-HHCCSEEEEEE
T ss_pred hH----HHHHHHHH-hcCCCcEEEEE
Confidence 11 23555554 48999998885
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.4e-06 Score=88.30 Aligned_cols=96 Identities=15% Similarity=0.084 Sum_probs=72.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCC--C-CCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFEN--V-PRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~--~-p~~-D~i~~~~ 273 (370)
+..+|||+|||+|.++..++... ..+++++|+ +.+++.++++ ++++++.+|+++. . ... |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 56799999999999999988743 346999998 8888877642 3799999999872 2 223 9999843
Q ss_pred -----------cccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 274 -----------MLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 274 -----------vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+++. ......+++.+.++|+|||.|++...
T Consensus 618 P~f~~~~~~~~~~~~--~~~~~~ll~~a~~~LkpgG~L~~s~~ 658 (703)
T 3v97_A 618 PTFSNSKRMEDAFDV--QRDHLALMKDLKRLLRAGGTIMFSNN 658 (703)
T ss_dssp CSBC-------CCBH--HHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCCccchhHHHH--HHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1111 13456889999999999999997554
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.6e-07 Score=79.30 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=61.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC--CeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC--IKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~--- 265 (370)
...+++.+. ..+..+|||||||+|.++..|++..+. .+++++|+ +.+++.+++. .+++++.+|+.+ +++.
T Consensus 31 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~~~~ 109 (279)
T 3uzu_A 31 IDAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGSIAR 109 (279)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGGGSC
T ss_pred HHHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhHhcc
Confidence 345666665 667789999999999999999998654 45899998 8888777653 679999999987 5443
Q ss_pred ----CCEEEecccccCCCh
Q 017495 266 ----GDAIFLKWMLHGWTD 280 (370)
Q Consensus 266 ----~D~i~~~~vLh~~~d 280 (370)
..+.++.+.-++.+.
T Consensus 110 ~~~~~~~~vv~NlPY~iss 128 (279)
T 3uzu_A 110 PGDEPSLRIIGNLPYNISS 128 (279)
T ss_dssp SSSSCCEEEEEECCHHHHH
T ss_pred cccCCceEEEEccCccccH
Confidence 124555555555443
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-06 Score=74.99 Aligned_cols=84 Identities=11% Similarity=0.122 Sum_probs=61.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~--- 265 (370)
...++..+. ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 445666665 6677899999999999999999874 68999998 888776654 3689999999998 5442
Q ss_pred -CCEEEecccccCCChh
Q 017495 266 -GDAIFLKWMLHGWTDE 281 (370)
Q Consensus 266 -~D~i~~~~vLh~~~d~ 281 (370)
....+..+.-++.+.+
T Consensus 95 ~~~~~vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLRVVGNLPYNISTP 111 (255)
T ss_dssp SSCEEEEEECCHHHHHH
T ss_pred CCCeEEEecCCcccCHH
Confidence 2233455555554443
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.5e-06 Score=73.80 Aligned_cols=90 Identities=11% Similarity=0.106 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCC---
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPR--- 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~--- 265 (370)
...+++.+. ..+..+|||||||+|.++. +. +.+..+++++|+ +.+++.+++. ++++++.+|+.+ +++.
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 455666665 6677899999999999999 64 444434999998 8888877653 479999999987 4432
Q ss_pred ---CCEEEecccccCCChhHHHHHH
Q 017495 266 ---GDAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 266 ---~D~i~~~~vLh~~~d~~~~~iL 287 (370)
.+.+++.+.-++.+.+-..++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2456666666666655444444
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.9e-06 Score=82.43 Aligned_cols=126 Identities=17% Similarity=0.069 Sum_probs=77.2
Q ss_pred hhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEE
Q 017495 169 QFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGI 235 (370)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~ 235 (370)
.|+-+++++-....|.+++.. .+.+......+...|||||||+|-++...+++. ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 355555555544555554432 222222211235689999999999975322221 234889
Q ss_pred Eeeh-hhHHHhCCC------CCCCeEEeccCCC-CC------CCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEE
Q 017495 236 SFDL-PHVLANAPS------FPGVEHVGGDMFE-NV------PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 236 ~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~------p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~l 300 (370)
+++. |.++...+. .++|+++.+|+.+ .. |+. |+|++-..=+....+-....|..+.+.|||||.+
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~ 530 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTIS 530 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEE
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEE
Confidence 9997 543322211 2679999999998 55 444 9998866544333343456788888999999975
Q ss_pred E
Q 017495 301 I 301 (370)
Q Consensus 301 l 301 (370)
+
T Consensus 531 i 531 (745)
T 3ua3_A 531 I 531 (745)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00016 Score=66.28 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=102.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeehhhHHHhCCC-----------------------------CCCCeEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDLPHVLANAPS-----------------------------FPGVEHVG 256 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~p~~~~~a~~-----------------------------~~rv~~~~ 256 (370)
+...|+-+|||.=.....+... .++++++-+|+|++++..++ .++..++.
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 4679999999999988888775 36789999999998774321 25688999
Q ss_pred ccCCC--C---------CCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhh
Q 017495 257 GDMFE--N---------VPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQ 323 (370)
Q Consensus 257 ~D~~~--~---------~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~ 323 (370)
.|+.+ . +.. . =++++-.+|.+++.+++.++|+.+.+..+ +|.+++.|.+.+++ .+...+
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~-~~~~i~yE~i~p~d-------~fg~~M 241 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFE-RAMFINYEQVNMGD-------RFGQIM 241 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCTTS-------HHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCC-CceEEEEeccCCCC-------HHHHHH
Confidence 99976 1 121 2 57788889999999999999999999875 56777789886542 111111
Q ss_pred hhHHhhhcCCC------cccCHHHHHHHHHhCCCCcceEEec
Q 017495 324 DLFMLAQTTGG------RERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 324 d~~~~~~~~~~------~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
--.+ . ..|- ...+.++..+.|.++||+.+++..+
T Consensus 242 ~~~l-~-~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 242 IENL-R-RRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHH-H-TTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHH-H-HhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 1011 0 1111 2247788899999999999877654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=70.79 Aligned_cols=112 Identities=17% Similarity=0.063 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCe-EEec-cCCCCCCC
Q 017495 193 LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVE-HVGG-DMFENVPR 265 (370)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~-~~~~-D~~~~~p~ 265 (370)
+-+.++.+.+. +.+..+|||+|||+|.++...++..+-.+++++|+ ......+.. ..++. +... |+..-.+.
T Consensus 77 fKL~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~ 155 (282)
T 3gcz_A 77 AKLRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVI 155 (282)
T ss_dssp HHHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCC
Confidence 34566777764 77888999999999999998887766667788886 332222221 01222 3222 33221122
Q ss_pred -CCEEEecccccC---CChh-HHHHHHHHHHHhCCCC--cEEEEEee
Q 017495 266 -GDAIFLKWMLHG---WTDE-HCLKLLKNCWEALPEN--GKVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh~---~~d~-~~~~iL~~~~~~L~pg--G~lli~e~ 305 (370)
.|+|++-...+. +.|+ ....+|+-+...|+|| |.+++--+
T Consensus 156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 399999766651 1122 2235688889999999 99988433
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-06 Score=72.11 Aligned_cols=96 Identities=24% Similarity=0.201 Sum_probs=62.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhh-------CCC-----CeEEEeeh-h---hHHHh-----------CC------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSR-------YPC-----IKGISFDL-P---HVLAN-----------AP------------ 247 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~-------~p~-----~~~~~~D~-p---~~~~~-----------a~------------ 247 (370)
+..+|||||+|+|..+..+++. .|+ ++++.++. | +.+.. ++
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4579999999999998887664 574 57888886 5 22111 10
Q ss_pred --------CCCCCeEEeccCCC---CCCC----C-CEEEecc-cccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 248 --------SFPGVEHVGGDMFE---NVPR----G-DAIFLKW-MLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 248 --------~~~rv~~~~~D~~~---~~p~----~-D~i~~~~-vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
...+++++.+|+.+ ..+. . |+|++-- .-..-++---..+|+.+++.|+|||.|+.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 11357789999866 2222 3 9998842 11111110124789999999999999885
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=1e-05 Score=73.27 Aligned_cols=78 Identities=19% Similarity=0.254 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-C--CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-N--VP- 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~--~p- 264 (370)
...++..+. ..+..+|||+|||+|..+..+++.+|+.+++++|. +.+++.++++ ++++++.+|+.+ + .+
T Consensus 15 l~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~ 93 (301)
T 1m6y_A 15 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 93 (301)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHh
Confidence 345555555 56778999999999999999999999889999998 8888876542 589999999865 2 11
Q ss_pred ---CC-CEEEecc
Q 017495 265 ---RG-DAIFLKW 273 (370)
Q Consensus 265 ---~~-D~i~~~~ 273 (370)
.. |.|++..
T Consensus 94 ~g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 94 LGIEKVDGILMDL 106 (301)
T ss_dssp TTCSCEEEEEEEC
T ss_pred cCCCCCCEEEEcC
Confidence 23 8887643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4e-05 Score=77.63 Aligned_cols=110 Identities=11% Similarity=-0.038 Sum_probs=75.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC------------------------------------------CCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY------------------------------------------PCI 232 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~------------------------------------------p~~ 232 (370)
+..++.... +.+..+|||.+||+|.+++..+... +..
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 445555554 7788899999999999999877642 336
Q ss_pred eEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC--C-C-CEEEec--ccccCCChhHHHHHHHHHH---HhC
Q 017495 233 KGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP--R-G-DAIFLK--WMLHGWTDEHCLKLLKNCW---EAL 294 (370)
Q Consensus 233 ~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p--~-~-D~i~~~--~vLh~~~d~~~~~iL~~~~---~~L 294 (370)
+++++|+ +.+++.++.+ +.+++..+|+.+ ..| . . |+|+++ +-...-.+++...+.+.+. +.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 7999998 9998887653 358999999987 223 2 3 999986 3221112334455555444 444
Q ss_pred CCCcEEEEEee
Q 017495 295 PENGKVIIVES 305 (370)
Q Consensus 295 ~pgG~lli~e~ 305 (370)
.|||+++++..
T Consensus 338 ~~g~~~~ilt~ 348 (703)
T 3v97_A 338 FGGWNLSLFSA 348 (703)
T ss_dssp CTTCEEEEEES
T ss_pred CCCCeEEEEeC
Confidence 58999999755
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=75.47 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---CC-------------
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---VP------------- 264 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~p------------- 264 (370)
..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ ++++++.+|+.+. .+
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 4689999999999999998743 58999998 8888877642 4789999998651 11
Q ss_pred --CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. |+|++. -|. ..+...+.+.|+|+|+++.+..
T Consensus 292 ~~~~fD~Vv~d-----PPr---~g~~~~~~~~l~~~g~ivyvsc 327 (369)
T 3bt7_A 292 KSYQCETIFVD-----PPR---SGLDSETEKMVQAYPRILYISC 327 (369)
T ss_dssp GGCCEEEEEEC-----CCT---TCCCHHHHHHHTTSSEEEEEES
T ss_pred ccCCCCEEEEC-----cCc---cccHHHHHHHHhCCCEEEEEEC
Confidence 13 888763 111 1234556667778898887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.3e-05 Score=73.45 Aligned_cols=92 Identities=12% Similarity=0.016 Sum_probs=69.7
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------------------CCCeEEeccCCCC--
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------------PGVEHVGGDMFEN-- 262 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------------~rv~~~~~D~~~~-- 262 (370)
+..+|||+|||+|..+..++++.+..+++++|. +..++.++++ .+++++.+|..+.
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 367999999999999999999988889999998 8777665431 1278899998652
Q ss_pred -CCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 263 -VPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 263 -~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+.. |+|++.- .. + ...+|..+.+.|+|||.|++.-
T Consensus 127 ~~~~~fD~I~lDP-~~--~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDP-FG--S---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECC-SS--C---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCC-CC--C---HHHHHHHHHHhcCCCCEEEEEe
Confidence 2233 9988532 11 1 2478999999999999877753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.73 E-value=7e-05 Score=68.17 Aligned_cols=102 Identities=16% Similarity=0.110 Sum_probs=68.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CC--C--CC-CEEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NV--P--RG-DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~--p--~~-D~i~ 270 (370)
..+..+|||+|||+|..+.++++.. +..+++++|. +..++.++++ .+++++.+|+.+ .. + .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 5567899999999999999999875 5578999998 7777765532 478999999876 21 1 22 9998
Q ss_pred ec------ccccCCCh---------hHH-------HHHHHHHHHhCCCCcEEEEEeecC
Q 017495 271 LK------WMLHGWTD---------EHC-------LKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 271 ~~------~vLh~~~d---------~~~-------~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+. .++...+| ++. .++|+.+.+.++ ||+|+......
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 61 12221111 111 257888877776 89887765543
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.72 E-value=4.3e-05 Score=67.75 Aligned_cols=99 Identities=16% Similarity=0.195 Sum_probs=67.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-h-------hHHHhCCCC-------CCCeEEeccCCCC---CC--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-P-------HVLANAPSF-------PGVEHVGGDMFEN---VP-- 264 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p-------~~~~~a~~~-------~rv~~~~~D~~~~---~p-- 264 (370)
..+..+|||+|||+|..+..+++. +.+++++|. + .+++.++++ ++++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 345579999999999999999985 568999998 8 777766543 4699999998762 33
Q ss_pred -CC-CEEEecccccCCC------------------hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 265 -RG-DAIFLKWMLHGWT------------------DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 265 -~~-D~i~~~~vLh~~~------------------d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.. |+|++.-.+++-. +.+...+++.+.++.+. ++++-.+..
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcCCC
Confidence 33 9999965554421 12234566666666543 566655543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=66.55 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-CC--CEEEecccccCCChh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-RG--DAIFLKWMLHGWTDE 281 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~~--D~i~~~~vLh~~~d~ 281 (370)
+.+..++||+||++|.++..++++ +.+++++|...+.......++|++..+|.+...| .. |+|++-.+.+ ..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~---p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVEK---PA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSSC---HH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCCC---hH
Confidence 467899999999999999999986 5799999974333333445789999999998434 33 9999987764 33
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 282 HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
....++.+.......++.++....
T Consensus 284 ~~~~l~~~wl~~~~~~~aI~~lKL 307 (375)
T 4auk_A 284 KVAALMAQWLVNGWCRETIFNLKL 307 (375)
T ss_dssp HHHHHHHHHHHTTSCSEEEEEEEC
T ss_pred HhHHHHHHHHhccccceEEEEEEe
Confidence 444555554444444565555444
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0002 Score=63.51 Aligned_cols=109 Identities=11% Similarity=0.014 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCC-CeEEec-cCCCCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPG-VEHVGG-DMFENVPR-G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~r-v~~~~~-D~~~~~p~-~ 266 (370)
+.++.+. .-+.+..+|||+||++|.++..+++..+-.+++++|+ ......... ..+ +.+..+ |+..-.+. .
T Consensus 70 L~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~ 148 (300)
T 3eld_A 70 IRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPS 148 (300)
T ss_dssp HHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCc
Confidence 4455555 3256788999999999999999998766556778886 221111110 011 223322 33332222 3
Q ss_pred CEEEecccccCCC----hh-HHHHHHHHHHHhCCCC-cEEEEEee
Q 017495 267 DAIFLKWMLHGWT----DE-HCLKLLKNCWEALPEN-GKVIIVES 305 (370)
Q Consensus 267 D~i~~~~vLh~~~----d~-~~~~iL~~~~~~L~pg-G~lli~e~ 305 (370)
|+|++....+ -. |. ....+|+-+...|+|| |.+++--+
T Consensus 149 DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF 192 (300)
T 3eld_A 149 DTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVL 192 (300)
T ss_dssp SEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEES
T ss_pred CEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEec
Confidence 9999865554 11 11 1235688889999999 99998433
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.8e-05 Score=75.47 Aligned_cols=109 Identities=15% Similarity=0.110 Sum_probs=74.9
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC------------------CCeEEEeeh-hhHHHhCCC------CC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP------------------CIKGISFDL-PHVLANAPS------FP 250 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p------------------~~~~~~~D~-p~~~~~a~~------~~ 250 (370)
..+++.+. .....+|+|.+||+|.++..+.+... ...++++|+ +.++..++. ..
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33444444 44567999999999999988876532 247899998 777776542 12
Q ss_pred C-----CeEEeccCCC-C-CC--CCCEEEecccccCCC------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 251 G-----VEHVGGDMFE-N-VP--RGDAIFLKWMLHGWT------------DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 251 r-----v~~~~~D~~~-~-~p--~~D~i~~~~vLh~~~------------d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. +.+..+|.+. + .+ ..|+|+++--+.... ...-..++..+.+.|+|||++.++-+
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2 7899999887 3 22 239999854332211 11124789999999999999998754
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=1.7e-05 Score=90.57 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=65.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-----CeEEEeeh-hhHHHhCCCC-C--CCeEEeccCCCC---CCCC-CEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-----IKGISFDL-PHVLANAPSF-P--GVEHVGGDMFEN---VPRG-DAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-----~~~~~~D~-p~~~~~a~~~-~--rv~~~~~D~~~~---~p~~-D~i~~~~ 273 (370)
+..+||+||+|+|..+..+++.... .+++..|. +...+.+++. . .+.....|..++ .+.. |+|+..+
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence 4679999999999887777766532 25677776 5555555543 1 122222233222 2233 9999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
+||.-+ +....|+++++.|+|||+|++.+...... +.......-..........+.++|.++|+++||+.
T Consensus 1320 vl~~t~--~~~~~l~~~~~lL~p~G~l~~~e~~~~~~--------~g~~~~~~~~~~r~~~~~~~~~~w~~~l~~~gf~~ 1389 (2512)
T 2vz8_A 1320 ALATLG--DPAVAVGNMAATLKEGGFLLLHTLLAGHP--------LGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHL 1389 (2512)
T ss_dssp C----------------------CCEEEEEEC----------------------------------CTTTTSSTTTTEEE
T ss_pred cccccc--cHHHHHHHHHHhcCCCcEEEEEecccccc--------ccccccccccccccCCcccCHHHHHHHHHhCCCce
Confidence 999644 44678999999999999999988643110 00000000000000122346778999999999998
Q ss_pred ceEEe
Q 017495 354 LEIVC 358 (370)
Q Consensus 354 v~~~~ 358 (370)
+....
T Consensus 1390 ~~~~~ 1394 (2512)
T 2vz8_A 1390 VALKR 1394 (2512)
T ss_dssp EEEEE
T ss_pred eeecc
Confidence 76543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00029 Score=61.17 Aligned_cols=110 Identities=14% Similarity=0.071 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCC-eEEEeeh-hhH-HHhCCCC-CCC---eEEec-cCCCCCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCI-KGISFDL-PHV-LANAPSF-PGV---EHVGG-DMFENVPR 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~-~~~a~~~-~rv---~~~~~-D~~~~~p~ 265 (370)
-+.++.+..- +++..+|||+||+.|.++...++. .++ .+.+.++ .+. +...... ..+ .|..+ |+++..+.
T Consensus 61 KL~EIdeK~l-ikpg~~VVDLGaAPGGWSQvAa~~-~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~ 138 (269)
T 2px2_A 61 KLRWLVERRF-VQPIGKVVDLGCGRGGWSYYAATM-KNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSE 138 (269)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTSHHHHHHTTS-TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCC
T ss_pred HHHHHHHcCC-CCCCCEEEEcCCCCCHHHHHHhhh-cCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCC
Confidence 3556666653 788999999999999999988875 222 2223333 110 1111111 345 44447 99874443
Q ss_pred -CCEEEeccccc---CCChhH-HHHHHHHHHHhCCCCc-EEEEEee
Q 017495 266 -GDAIFLKWMLH---GWTDEH-CLKLLKNCWEALPENG-KVIIVES 305 (370)
Q Consensus 266 -~D~i~~~~vLh---~~~d~~-~~~iL~~~~~~L~pgG-~lli~e~ 305 (370)
.|+|++-..-. ...|.. ...+|.-+.+.|+||| .+++=-+
T Consensus 139 ~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF 184 (269)
T 2px2_A 139 ISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL 184 (269)
T ss_dssp CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred CCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence 49998854321 111111 1236777889999999 8887333
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=3.3e-05 Score=72.52 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=70.4
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-------CC-CeEEeccCCC--C-C-CCC-CEEEe
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-------PG-VEHVGGDMFE--N-V-PRG-DAIFL 271 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~D~~~--~-~-p~~-D~i~~ 271 (370)
+..+|||++||+|.++..++.+.++ .+++.+|. +..++.++++ ++ ++++.+|..+ . . +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999998766 57899998 8888776642 34 8999999865 2 1 223 99988
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.- +... ..+++.+.+.|+|||.|++..
T Consensus 132 DP--~g~~----~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP--FGTP----VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC--SSCC----HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC--CcCH----HHHHHHHHHHhCCCCEEEEEe
Confidence 54 2111 368999999999999777755
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00078 Score=57.57 Aligned_cols=113 Identities=14% Similarity=0.109 Sum_probs=74.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh---CCCC--CCCeEEec-cCCCCCCC-
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN---APSF--PGVEHVGG-DMFENVPR- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~---a~~~--~rv~~~~~-D~~~~~p~- 265 (370)
-+.++.+.+. +.+..+|||+||++|.++...+....-.+++++|+ +.-.+. .+.+ +-|+|..+ |++.-.|.
T Consensus 66 KL~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~ 144 (267)
T 3p8z_A 66 KLQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK 144 (267)
T ss_dssp HHHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence 3556777664 77888999999999999998877765557899997 332221 1112 56899999 97652223
Q ss_pred CCEEEecccccCCC---hh-HHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 266 GDAIFLKWMLHGWT---DE-HCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 266 ~D~i~~~~vLh~~~---d~-~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
.|+|+|--.=..-+ |+ ....+|.-+.+.|++ |.+++ .-+.+.
T Consensus 145 ~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~-KVl~py 190 (267)
T 3p8z_A 145 CDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI-KVLNPY 190 (267)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE-EESCCC
T ss_pred ccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE-EEccCC
Confidence 49998854432211 11 113477777899999 77777 434333
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00069 Score=68.34 Aligned_cols=100 Identities=11% Similarity=0.051 Sum_probs=67.3
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC---CCeEEEeeh-hhHHHhC--C----C----C--CCCeEEeccCCCCC--C-CC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP---CIKGISFDL-PHVLANA--P----S----F--PGVEHVGGDMFENV--P-RG 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p---~~~~~~~D~-p~~~~~a--~----~----~--~rv~~~~~D~~~~~--p-~~ 266 (370)
....+|+|.|||+|.++..+++..+ ..+++++|+ +.+++.+ + . + ....+...|+..+. + ..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTT
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCC
Confidence 4568999999999999999998876 357899998 7766655 1 1 1 22356666666521 2 22
Q ss_pred -CEEEec--ccccCCChhH-------------------------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 -DAIFLK--WMLHGWTDEH-------------------------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 -D~i~~~--~vLh~~~d~~-------------------------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|+++ ++.....+.. ...+++.+.+.|+|||++.++-+
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999883 2221111111 23578899999999999998654
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0014 Score=57.87 Aligned_cols=107 Identities=11% Similarity=0.124 Sum_probs=70.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHh---CCCC--CCCeEEec-cCCCCCCC-
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLAN---APSF--PGVEHVGG-DMFENVPR- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~---a~~~--~rv~~~~~-D~~~~~p~- 265 (370)
-+.++.+.+. +.+..+|||+||++|.++...+....-.+++++|+ ..-.+. .++. .-|.+.++ |++.-.|.
T Consensus 82 KL~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~ 160 (321)
T 3lkz_A 82 KLRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC 160 (321)
T ss_dssp HHHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence 3556666655 77778999999999999997777655557899997 321111 1111 23788888 87652233
Q ss_pred CCEEEecccccCCChhH-----HHHHHHHHHHhCCCC-cEEEE
Q 017495 266 GDAIFLKWMLHGWTDEH-----CLKLLKNCWEALPEN-GKVII 302 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~-----~~~iL~~~~~~L~pg-G~lli 302 (370)
.|+|+|--. .--+.+. ...+|.-+.+.|++| |.++|
T Consensus 161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence 499888554 2222222 134777778999998 88887
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00012 Score=71.73 Aligned_cols=109 Identities=14% Similarity=0.120 Sum_probs=71.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC---------------CCeEEEeeh-hhHHHhCCCC-------CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP---------------CIKGISFDL-PHVLANAPSF-------PG 251 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p---------------~~~~~~~D~-p~~~~~a~~~-------~r 251 (370)
...+++.+. . ...+|+|.+||+|.++..+.+... ...++++|+ +.++..++.. .+
T Consensus 234 v~lmv~ll~-p-~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-P-YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-C-CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-c-CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344444443 2 234999999999999988765432 467899998 7777766531 23
Q ss_pred CeEEeccCCC-C-CCC-C-CEEEec--ccccCCChh-------------------------HHHHHHHHHHHhCCCCcEE
Q 017495 252 VEHVGGDMFE-N-VPR-G-DAIFLK--WMLHGWTDE-------------------------HCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 252 v~~~~~D~~~-~-~p~-~-D~i~~~--~vLh~~~d~-------------------------~~~~iL~~~~~~L~pgG~l 300 (370)
+.+..+|.+. + .+. . |+|+++ +....|..+ .-..+++.+.+.|+|||++
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ 391 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSM 391 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEE
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceE
Confidence 5558888876 3 222 2 999984 222112111 1126899999999999999
Q ss_pred EEEee
Q 017495 301 IIVES 305 (370)
Q Consensus 301 li~e~ 305 (370)
.++-+
T Consensus 392 aiVlP 396 (544)
T 3khk_A 392 ALLLA 396 (544)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88643
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0027 Score=50.24 Aligned_cols=85 Identities=16% Similarity=0.074 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCccc-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC----CCCEEEecccccCCC
Q 017495 206 DGLKVLVDVGGGIG-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP----RGDAIFLKWMLHGWT 279 (370)
Q Consensus 206 ~~~~~vLDvG~G~G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p----~~D~i~~~~vLh~~~ 279 (370)
....+|||||||.| ..+..|++. .+..++++|+ |..+ .++..|++++.. ..|+|...+-
T Consensus 34 ~~~~rVlEVG~G~g~~vA~~La~~-~g~~V~atDInp~Av---------~~v~dDiF~P~~~~Y~~~DLIYsirP----- 98 (153)
T 2k4m_A 34 GPGTRVVEVGAGRFLYVSDYIRKH-SKVDLVLTDIKPSHG---------GIVRDDITSPRMEIYRGAALIYSIRP----- 98 (153)
T ss_dssp CSSSEEEEETCTTCCHHHHHHHHH-SCCEEEEECSSCSST---------TEECCCSSSCCHHHHTTEEEEEEESC-----
T ss_pred CCCCcEEEEccCCChHHHHHHHHh-CCCeEEEEECCcccc---------ceEEccCCCCcccccCCcCEEEEcCC-----
Confidence 35679999999999 588888864 4678999997 6543 299999999655 2399976543
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+++....|.++.+.. |.-++|.-...
T Consensus 99 P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 99 PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 334444444444443 45666654433
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00093 Score=65.40 Aligned_cols=98 Identities=17% Similarity=0.156 Sum_probs=70.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhC---CCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCC-CCC---C-C-CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRY---PCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFE-NVP---R-G-DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~-~~p---~-~-D~ 268 (370)
...+|+|.+||+|.++..+.+.. +...++++|+ +.+...++.+ +++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 56799999999999999998875 3678999998 7777666531 356899999987 333 2 2 99
Q ss_pred EEecccc-cCC------------------C---hhHHHHHHHHHHHhCC-CCcEEEEEee
Q 017495 269 IFLKWML-HGW------------------T---DEHCLKLLKNCWEALP-ENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vL-h~~------------------~---d~~~~~iL~~~~~~L~-pgG~lli~e~ 305 (370)
|+++==+ ..| + ..+ ..++..+.+.|+ |||++.++-+
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence 9974110 111 1 111 258999999999 9999988654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00019 Score=66.47 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=69.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------------CCCeEEeccCCCCC------CC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------------PGVEHVGGDMFENV------PR 265 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------------~rv~~~~~D~~~~~------p~ 265 (370)
++.+||=||+|.|..+.++++. |..+++.+|+ |.+++.++++ +|++++.+|...-. ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 4689999999999999999875 5578999999 9998876531 46889999986511 12
Q ss_pred -CCEEEeccccc-------CCChh-HHHHHHHHHHHhCCCCcEEEEE
Q 017495 266 -GDAIFLKWMLH-------GWTDE-HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 266 -~D~i~~~~vLh-------~~~d~-~~~~iL~~~~~~L~pgG~lli~ 303 (370)
.|+|+.--.=. ..... -...+++.++++|+|||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 29998752211 10111 1257899999999999998864
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0001 Score=65.07 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=51.7
Q ss_pred CCCC--CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhH-------HHhCCC-------C-CCCeEEeccCCC---CC
Q 017495 205 FDGL--KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHV-------LANAPS-------F-PGVEHVGGDMFE---NV 263 (370)
Q Consensus 205 ~~~~--~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~-------~~~a~~-------~-~rv~~~~~D~~~---~~ 263 (370)
.++. .+|||+|||+|..+..++.+ +.+++++|. +.+ ++.++. . .+++++.+|..+ ..
T Consensus 84 l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~ 161 (258)
T 2oyr_A 84 IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI 161 (258)
T ss_dssp CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC
T ss_pred ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC
Confidence 4455 79999999999999999997 457999998 643 332221 1 368999999876 23
Q ss_pred CCC-CEEEecccccC
Q 017495 264 PRG-DAIFLKWMLHG 277 (370)
Q Consensus 264 p~~-D~i~~~~vLh~ 277 (370)
+.. |+|++.-..++
T Consensus 162 ~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 162 TPRPQVVYLDPMFPH 176 (258)
T ss_dssp SSCCSEEEECCCCCC
T ss_pred cccCCEEEEcCCCCC
Confidence 334 99999766655
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0014 Score=58.43 Aligned_cols=123 Identities=14% Similarity=0.064 Sum_probs=82.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh-hhH--------------------------HHhCCC-----
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL-PHV--------------------------LANAPS----- 248 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~--------------------------~~~a~~----- 248 (370)
..+.+|||+|+..|..+..++... ++.+++++|. ... ++.+++
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 456899999999999999887664 4778999883 110 111111
Q ss_pred ---CCCCeEEeccCCCC---CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhh
Q 017495 249 ---FPGVEHVGGDMFEN---VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIV 320 (370)
Q Consensus 249 ---~~rv~~~~~D~~~~---~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~ 320 (370)
.++|+++.||+.+. .+.. |+|++-.-.+ +.....|..+...|+|||.|++-+. .
T Consensus 185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y----~~~~~~Le~~~p~L~pGGiIv~DD~-~------------- 246 (282)
T 2wk1_A 185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY----ESTWDTLTNLYPKVSVGGYVIVDDY-M------------- 246 (282)
T ss_dssp TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH----HHHHHHHHHHGGGEEEEEEEEESSC-T-------------
T ss_pred CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc----ccHHHHHHHHHhhcCCCEEEEEcCC-C-------------
Confidence 16799999999773 2222 8888765332 2356889999999999998887442 1
Q ss_pred hhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 321 FEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 321 ~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
+ + .| ..+.|.+.+++.|++. .+.++.
T Consensus 247 -~-------~--~G---~~~Av~Ef~~~~~i~~-~i~~~~ 272 (282)
T 2wk1_A 247 -M-------C--PP---CKDAVDEYRAKFDIAD-ELITID 272 (282)
T ss_dssp -T-------C--HH---HHHHHHHHHHHTTCCS-CCEECS
T ss_pred -C-------C--HH---HHHHHHHHHHhcCCce-EEEEec
Confidence 0 0 01 1457888889989774 455543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.003 Score=57.31 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=94.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCCC----------CC-
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENVP----------RG- 266 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~p----------~~- 266 (370)
+...||++|||-=.....+.. .++++++-+|.|.+++..++ ..+..++..|+.+.+. ..
T Consensus 102 g~~QvV~LGaGlDTra~Rl~~-~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~P 180 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLDW-PTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 180 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSCC-CTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCCCCCchhhhccC-CCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCC
Confidence 456899999998887666542 13589999999998876542 3568899999876211 11
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhc--------CCCcc-c
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQT--------TGGRE-R 337 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~~~~~-~ 337 (370)
=++++-.+||++++++...+|+.+.+.+.||+.|++ |.+.++.. .. ......... ..+... ..... +
T Consensus 181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~-~~~~~~g~~~~~~l~~~~~~~ 256 (310)
T 2uyo_A 181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFR-RVSDALGFEQAVDVQELIYHD 256 (310)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHH-HHHC-----------CCTTCC
T ss_pred EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHH-HHHHHcCCcCCCCccccccCC
Confidence 577888899999999999999999999999888776 44443321 00 000000000 001000 01112 2
Q ss_pred C-HHHHHHHHHhCCCCcc
Q 017495 338 S-KKEYEALAKNSGFSGL 354 (370)
Q Consensus 338 t-~~e~~~ll~~aGf~~v 354 (370)
+ .++..++|.++||+.+
T Consensus 257 ~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 257 ENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp TTCCCHHHHHTTTTEEEE
T ss_pred CChHHHHHHHHHCcCccc
Confidence 5 7889999999999987
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0018 Score=54.76 Aligned_cols=88 Identities=11% Similarity=0.044 Sum_probs=60.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCCC--------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFEN-------------- 262 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~~-------------- 262 (370)
+..+||||||| ..+..+++ .++.+++.+|. ++..+.+++ .++|+++.+|..+.
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~ 106 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRS 106 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGG
T ss_pred CCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhh
Confidence 46799999985 67777776 35789999986 666655542 34799999996431
Q ss_pred ----------CC--C-CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 263 ----------VP--R-GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 263 ----------~p--~-~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+ . .|+|++-.-. ....+..+.+.|+|||.|++-+
T Consensus 107 l~~~~~~i~~~~~~~~fDlIfIDg~k-------~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 107 YPDYPLAVWRTEGFRHPDVVLVDGRF-------RVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp TTHHHHGGGGCTTCCCCSEEEECSSS-------HHHHHHHHHHHCSSCEEEEETT
T ss_pred HHHHhhhhhccccCCCCCEEEEeCCC-------chhHHHHHHHhcCCCeEEEEeC
Confidence 12 2 2999986421 1244556779999999985533
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0036 Score=63.42 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=102.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC--------CCeEEEeehhhHHHhCCCC-----------------------------
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP--------CIKGISFDLPHVLANAPSF----------------------------- 249 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p--------~~~~~~~D~p~~~~~a~~~----------------------------- 249 (370)
+...|+-+|||.=....+|...+| +++++-+|+|++++..++.
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 467999999999999999988755 7888999999887643210
Q ss_pred -CCCeEEeccCCCC--C----------CCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC
Q 017495 250 -PGVEHVGGDMFEN--V----------PRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ 314 (370)
Q Consensus 250 -~rv~~~~~D~~~~--~----------p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~ 314 (370)
++..++..|+.+. + ... -++++-.+|.+++.+++.++|+.+.+ + |+|.+++.|.+.+..+..
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d- 263 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE- 263 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS-
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC-
Confidence 3688999999872 1 222 56778889999999999999999985 4 688999999887653222
Q ss_pred ccchhhhhhhhHHhhhcCC------CcccCHHHHHHHHHhCCCCcceEEec
Q 017495 315 ASSHIVFEQDLFMLAQTTG------GRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 315 ~~~~~~~~~d~~~~~~~~~------~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.+...+- ..+.. .+ ....+.++..+.|.++||+.+....+
T Consensus 264 ---~f~~~m~-~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 264 ---PFSKQML-AHFKR-NDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp ---HHHHHHH-HHHHH-TTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred ---hHHHHHH-HHHHH-cCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 1222211 11110 01 12347899999999999987766543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00052 Score=64.60 Aligned_cols=64 Identities=25% Similarity=0.397 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCCC-----CCCEEEe
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENVP-----RGDAIFL 271 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~p-----~~D~i~~ 271 (370)
.+..+|||+|||+|..+..+++. ..+++++|. +.+++.++.+ ++++++.+|+.+..+ ..|+|++
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l 169 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV 169 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred CCCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence 34689999999999999999886 468999998 8888776542 468999999987321 2399998
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00076 Score=46.22 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=44.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
+..|++.|... +.|++..|||+.+|+ +...+.+.|..|...|+|...+ .++|+++
T Consensus 12 ~~~IL~~L~~~-------~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~~--------~G~y~lg 66 (67)
T 2heo_A 12 EQKILQVLSDD-------GGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSPS--------PKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH-------CSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEEE--------TTEEEEC
T ss_pred HHHHHHHHHHc-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecCC--------CceEeeC
Confidence 45688888764 137999999999999 9999999999999999987531 3677754
|
| >3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0018 Score=49.06 Aligned_cols=61 Identities=20% Similarity=0.181 Sum_probs=51.0
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHC--CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARL--PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+..|++.|... ++.|+.+||+.+ ++ ++..+++.|+.|...|+|+.. | .+.|++|+.+.
T Consensus 15 d~~IL~~L~~~--------g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~------~--rg~Y~LT~~G~ 74 (111)
T 3b73_A 15 DDRILEIIHEE--------GNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPL------A--NGVYVITEEGE 74 (111)
T ss_dssp HHHHHHHHHHH--------SCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEEC------S--TTCEEECHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEec------C--CceEEECchHH
Confidence 45678888764 389999999999 99 999999999999999999963 1 35899999997
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 75 ~~l 77 (111)
T 3b73_A 75 AYL 77 (111)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0019 Score=57.15 Aligned_cols=64 Identities=27% Similarity=0.281 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC--CCCCeEEeccCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS--FPGVEHVGGDMFE 261 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~D~~~ 261 (370)
..+++..+. ..+...+||.+||.|..+..++++ +.+++++|. |.+++.+++ .+|++++.+|+.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456666666 677889999999999999999997 679999998 888765542 1578898888865
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0022 Score=47.85 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=48.8
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
+|.--.++.|+..|..+ +.++.|||+.+|+ ++..+++.|+.|...|+|...+ +|+ ...|+++
T Consensus 19 ~l~~~~r~~Il~~L~~~---------~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~----~g~-~~~y~l~ 80 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVEG---------EFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRR----NIK-QIFYRLT 80 (102)
T ss_dssp HHCSHHHHHHHHHHHTC---------CBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEEC----SSS-CCEEEEC
T ss_pred HcCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEEC
Confidence 33444556677777665 7999999999999 9999999999999999998642 232 3567776
Q ss_pred hh
Q 017495 115 PI 116 (370)
Q Consensus 115 ~~ 116 (370)
+.
T Consensus 81 ~~ 82 (102)
T 3pqk_A 81 EA 82 (102)
T ss_dssp SS
T ss_pred cH
Confidence 53
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0016 Score=47.97 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=50.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.++..-.++.|+..| .+ ++++.+||+.+++ ++..+++.|+.|...|++... .+.|.+
T Consensus 26 ~~l~~~~r~~Il~~L-~~---------~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~---------~g~y~l 82 (96)
T 1y0u_A 26 YAVTNPVRRKILRML-DK---------GRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV---------GERWVV 82 (96)
T ss_dssp HHHSCHHHHHHHHHH-HT---------TCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEE
T ss_pred HHhCCHHHHHHHHHH-cC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE---------CCEEEE
Confidence 344455677788888 65 7999999999999 999999999999999999863 147888
Q ss_pred chhhh
Q 017495 114 APICK 118 (370)
Q Consensus 114 ~~~~~ 118 (370)
++.+.
T Consensus 83 ~~~g~ 87 (96)
T 1y0u_A 83 TDAGK 87 (96)
T ss_dssp CTTTC
T ss_pred CCCch
Confidence 77543
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0024 Score=45.10 Aligned_cols=60 Identities=8% Similarity=0.009 Sum_probs=48.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcc-hHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPF-LLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~-~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+-.|++.|... +|.|+.+||+.+|+ ... .+++.|..|...|+|+.. ..|+ -.|.+|+.+.
T Consensus 13 ~~~IL~~Lk~~--------g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~----~~gR--P~w~LT~~g~ 73 (79)
T 1xmk_A 13 KEKICDYLFNV--------SDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQ----GTTP--PIWHLTDKKR 73 (79)
T ss_dssp HHHHHHHHHHT--------CCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEE----CSSS--CEEEECHHHH
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEec----CCCC--CCeEeCHhHH
Confidence 45577788776 48999999999999 888 999999999999999853 1232 3899998775
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0032 Score=44.76 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=48.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.+..|++.|... ||+.++|+.+||+++|+ +...+++.|..|...|+|... + ++ .+.|...+...
T Consensus 11 ~~~~IL~~L~~~-----~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~---g--~~-~~~W~i~~~~~ 74 (81)
T 1qbj_A 11 QEQRILKFLEEL-----GEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKE---A--GT-PPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHHHHHHH-----CTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---S--SS-SCEEEEC----
T ss_pred HHHHHHHHHHHc-----CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---C--CC-CCeeEEeCcHH
Confidence 355578888776 55568999999999999 999999999999999999863 1 11 46777766543
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0017 Score=48.06 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=49.8
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
++..-.++.|+..|..+ +.++.+||+.+|+ ++..+++.|+.|...|++... .+|+ ...|.++
T Consensus 19 ~l~~~~r~~Il~~L~~~---------~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~----~~g~-~~~y~l~ 80 (98)
T 3jth_A 19 AMANERRLQILCMLHNQ---------ELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTR----KEAQ-TVYYTLK 80 (98)
T ss_dssp HHCSHHHHHHHHHTTTS---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----CCTT-CCEEEEC
T ss_pred HcCCHHHHHHHHHHhcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EeCC-EEEEEEC
Confidence 44445567778888765 8999999999999 999999999999999999864 2232 3457776
Q ss_pred hh
Q 017495 115 PI 116 (370)
Q Consensus 115 ~~ 116 (370)
+.
T Consensus 81 ~~ 82 (98)
T 3jth_A 81 SE 82 (98)
T ss_dssp CH
T ss_pred HH
Confidence 54
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.006 Score=47.75 Aligned_cols=89 Identities=8% Similarity=0.004 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHH
Q 017495 10 NATSVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSL 88 (370)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~ 88 (370)
+..+....-++..+++++.+-|...+|.. |..+ +.+..||++.+ ++ ++..|.+.|+.
T Consensus 6 ~~~~~~~~Cpi~~~l~~lg~kW~l~IL~~---------L~~g---------~~rf~eL~~~l~gI----s~~~Ls~~L~~ 63 (131)
T 4a5n_A 6 NIYPNKEGSPVEFTLDVIGGKWKGILFYH---------MIDG---------KKRFNEFRRICPSI----TQRMLTLQLRE 63 (131)
T ss_dssp -------CCHHHHHHHHHCSSSHHHHHHH---------HTTS---------CBCHHHHHHHCTTS----CHHHHHHHHHH
T ss_pred ccCCCCCCCcHHHHHHHHcCcCHHHHHHH---------HhcC---------CcCHHHHHHHhccc----CHHHHHHHHHH
Confidence 33333333367777888888777766653 3344 79999999999 99 99999999999
Q ss_pred HhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 89 LASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 89 L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
|+..|+|+... .+++ +....|.+|+.++.+..
T Consensus 64 Le~~GLV~R~~-~~~d-~r~v~y~LT~~G~~l~~ 95 (131)
T 4a5n_A 64 LEADGIVHREV-YHQV-PPKVEYSLTEFGRTLEP 95 (131)
T ss_dssp HHHTTSEEEEE-ECSS-SCEEEEEECTTGGGGHH
T ss_pred HHHCCCEEEEe-cCCC-CCeEEEEECHhHHHHHH
Confidence 99999999742 2222 11356999998876553
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0065 Score=53.68 Aligned_cols=92 Identities=14% Similarity=0.118 Sum_probs=60.7
Q ss_pred CCCCCeEEEEcC------cccHHHHHHHhhCCC-CeEEEeehhhHHHhCCCCCCCeEEeccCCCCCC-CC-CEEEeccc-
Q 017495 205 FDGLKVLVDVGG------GIGVTLGMITSRYPC-IKGISFDLPHVLANAPSFPGVEHVGGDMFENVP-RG-DAIFLKWM- 274 (370)
Q Consensus 205 ~~~~~~vLDvG~------G~G~~~~~l~~~~p~-~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p-~~-D~i~~~~v- 274 (370)
.+...+|||+|+ ..|.+ .+.+..|. ..++.+|+.++...+ . .++.||+.+... .. |+|++-..
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAP 179 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYD 179 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCC
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCC
Confidence 356789999996 67773 34444776 689999984443221 1 558999766222 22 99887321
Q ss_pred ------ccCC--ChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 275 ------LHGW--TDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 275 ------Lh~~--~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
-..- ...-++.+|.=+.+.|+|||.|++=
T Consensus 180 NtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK 216 (344)
T 3r24_A 180 PRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK 216 (344)
T ss_dssp TTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence 1111 1224778889999999999999983
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0027 Score=48.77 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=51.2
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|.--.++.|+..|..+ |.++.+||+.+|+ ++..+++.|+.|...|+|...+ +|+ ...|++
T Consensus 13 ~al~~~~R~~Il~~L~~~---------~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~----~gr-~~~y~l 74 (118)
T 3f6o_A 13 QALADPTRRAVLGRLSRG---------PATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHK----QGR-VRTCAI 74 (118)
T ss_dssp HHHTSHHHHHHHHHHHTC---------CEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEe----cCC-EEEEEE
Confidence 344445667777778765 8999999999999 9999999999999999998642 122 356777
Q ss_pred chhh
Q 017495 114 APIC 117 (370)
Q Consensus 114 ~~~~ 117 (370)
++..
T Consensus 75 ~~~~ 78 (118)
T 3f6o_A 75 EKEP 78 (118)
T ss_dssp CSHH
T ss_pred CHHH
Confidence 7654
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0059 Score=45.95 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..||++.+ ++ ++..+.+.|+.|...|+|+... ++.|++ ...|.+|+.++.+.
T Consensus 27 ~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~-~~~d~r-~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 27 KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIV-YNQVPP-KVEYELSEYGRSLE 82 (107)
T ss_dssp CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEE-ECSSSC-EEEEEECTTGGGGH
T ss_pred CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEee-cCCCCC-eEEEEECccHHHHH
Confidence 79999999999 99 9999999999999999999742 222221 34588888775443
|
| >3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0062 Score=46.17 Aligned_cols=52 Identities=10% Similarity=0.041 Sum_probs=43.4
Q ss_pred CCC--HHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLS--ASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t--~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.+ +.||++.+ |+ ++..+.+.|+.|...|+|+... . ....|.+|+.++.+..
T Consensus 40 ~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~-~-----r~~~y~LT~~G~~l~~ 94 (111)
T 3df8_A 40 STRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRS-G-----QITTYALTEKGMNVRN 94 (111)
T ss_dssp SSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEE-S-----SSEEEEECHHHHHHHH
T ss_pred CCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEee-c-----CcEEEEECccHHHHHH
Confidence 677 99999999 99 9999999999999999999642 1 1467999998875553
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0049 Score=47.62 Aligned_cols=67 Identities=13% Similarity=0.101 Sum_probs=50.6
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
..+|.--.++.|+..|... ++.++.+||+.+|+ ++..+.+.|+.|...|++... .+|+ ...|+
T Consensus 36 ~~al~~~~rl~IL~~L~~~--------~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~----~~gr-~~~y~ 98 (122)
T 1u2w_A 36 LKAIADENRAKITYALCQD--------EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALYS 98 (122)
T ss_dssp HHHHHSHHHHHHHHHHHHS--------SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEEE
T ss_pred HHHhCCHHHHHHHHHHHHC--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE----EECC-EEEEE
Confidence 3455555678899999843 38999999999999 999999999999999999863 1222 24577
Q ss_pred cchh
Q 017495 113 AAPI 116 (370)
Q Consensus 113 ~~~~ 116 (370)
+++.
T Consensus 99 l~~~ 102 (122)
T 1u2w_A 99 LGDE 102 (122)
T ss_dssp ESCH
T ss_pred ECHH
Confidence 7654
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0037 Score=50.33 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERV 110 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 110 (370)
-...+|.--.++.|+..|..+ ++++.+||+.+++ ++..+.+.|+.|...|+|+..+ +|+ ...
T Consensus 50 ~~l~aL~~p~R~~IL~~L~~~---------~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~----~Gr-~~~ 111 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLTSG---------EQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRK----DGR-FRY 111 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGGGC---------CEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEE
T ss_pred HHHHHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEE
Confidence 345666677888899999865 8999999999999 9999999999999999998642 232 356
Q ss_pred eecchhhh
Q 017495 111 YGAAPICK 118 (370)
Q Consensus 111 y~~~~~~~ 118 (370)
|++++...
T Consensus 112 y~lt~~~~ 119 (151)
T 3f6v_A 112 YRLDPQGL 119 (151)
T ss_dssp EEECHHHH
T ss_pred EEEChHHH
Confidence 88887553
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0068 Score=42.64 Aligned_cols=49 Identities=22% Similarity=0.329 Sum_probs=41.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|... |++.++|+.|||+++|+ +...+.+.|..|...|+|..
T Consensus 15 ~~~~IL~~L~~~-----~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~ 63 (77)
T 1qgp_A 15 QEQRILKFLEEL-----GEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQK 63 (77)
T ss_dssp HHHHHHHHHHHH-----CSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc-----CCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 356688888876 33347999999999999 99999999999999999985
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0069 Score=45.89 Aligned_cols=62 Identities=23% Similarity=0.258 Sum_probs=47.4
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
-.++.|+..|..+ +.++.+||+.+++ ++..+.+.|+.|...|+|.... +|+ ...|.+++.+.
T Consensus 21 ~~r~~IL~~L~~~---------~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~----~gr-~~~y~l~~~~~ 82 (114)
T 2oqg_A 21 ETRWEILTELGRA---------DQSASSLATRLPV----SRQAIAKHLNALQACGLVESVK----VGR-EIRYRALGAEL 82 (114)
T ss_dssp HHHHHHHHHHHHS---------CBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEECSHHH
T ss_pred hHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEe----cCC-EEEEEechHHH
Confidence 3456677777544 7999999999999 9999999999999999998631 121 24477776553
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.01 Score=54.83 Aligned_cols=104 Identities=15% Similarity=0.114 Sum_probs=71.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC------------CCCCCeEEeccCCC--C-CCCC-C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP------------SFPGVEHVGGDMFE--N-VPRG-D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------------~~~rv~~~~~D~~~--~-~p~~-D 267 (370)
..++.+|||+.+|.|+=+.+++...++..++..|. +.-+...+ ...++.+...|... . .+.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 56778999999999999999999877767888886 44333221 11457788888765 1 2333 8
Q ss_pred EEEec----c----c-------ccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 268 AIFLK----W----M-------LHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 268 ~i~~~----~----v-------Lh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.|++- . + .+.+...+. .++|.++.+.|||||+|+-......
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 88761 1 1 122222222 3789999999999999988776554
|
| >1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0099 Score=41.83 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=38.4
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.++++|||+.+++ ++.-++|.|..|+..|++.+.
T Consensus 7 Il~~L~~~--------g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALR--------GRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHS--------CSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHc--------CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 56777765 48999999999999 999999999999999999863
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.006 Score=44.86 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=50.0
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
++..-.++.|+..|..+ ++.|..+||+.+++ ++..+.+.|+.|...|++...+ +|+ ...|.++
T Consensus 20 ~l~~~~~~~il~~l~~~--------~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~----~~r-~~~y~l~ 82 (99)
T 3cuo_A 20 AMSHPKRLLILCMLSGS--------PGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQR----DAQ-RILYSIK 82 (99)
T ss_dssp HHCSHHHHHHHHHHTTC--------CSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE----CSS-CEEEEEC
T ss_pred HhCChHHHHHHHHHHhC--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe----cCC-EEEEEEC
Confidence 33344566778888765 48999999999999 9999999999999999998642 222 3457776
Q ss_pred hhh
Q 017495 115 PIC 117 (370)
Q Consensus 115 ~~~ 117 (370)
+..
T Consensus 83 ~~~ 85 (99)
T 3cuo_A 83 NEA 85 (99)
T ss_dssp CHH
T ss_pred hHH
Confidence 544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.014 Score=52.89 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC--CCCCeEEeccCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS--FPGVEHVGGDMFE 261 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~D~~~ 261 (370)
.+.+++..+. ..+...++|..+|.|..+..+++.. |+.+++++|. |.+++.++. .+|++++.+++.+
T Consensus 45 Ll~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 45 LLDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp TTHHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred cHHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 3567777776 6778899999999999999999985 7889999998 888887643 2466777666543
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0095 Score=42.79 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=38.5
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|.+.|... +.++++|||+.+++ ++..++|.|..|+..|+|.+.
T Consensus 7 Il~~L~~~--------g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQ--------GRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHS--------CSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHc--------CCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 56777765 48999999999999 999999999999999999964
|
| >1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.011 Score=44.73 Aligned_cols=79 Identities=13% Similarity=0.021 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+...+++++.+.+...+| ..|..+ +.+..+||+.+ ++ ++..+.+.|+.|...|+|+.
T Consensus 11 ~~~~~l~~l~~~~~~~IL---------~~L~~~---------~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r 68 (112)
T 1z7u_A 11 SINLALSTINGKWKLSLM---------DELFQG---------TKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHR 68 (112)
T ss_dssp HHHHHHHTTCSTTHHHHH---------HHHHHS---------CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHcCccHHHHH---------HHHHhC---------CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEE
Confidence 455555555555554443 344445 79999999999 99 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|+ ....|.+|+.++.+.
T Consensus 69 ~~-~~~d~-r~~~~~LT~~G~~~~ 90 (112)
T 1z7u_A 69 ES-FNELP-PRVEYTLTPEGYALY 90 (112)
T ss_dssp EE-ECCSS-CEEEEEECHHHHHHH
T ss_pred ee-cCCCC-CeEEEEECHhHHHHH
Confidence 42 22222 134589998886544
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.011 Score=43.36 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=53.5
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.++..-.++.|+..|... ++.+..+||+.+++ ++..+.+.|+.|...|++..... ..+++ ...|.+
T Consensus 11 ~~l~~~~~~~iL~~L~~~--------~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~-~~~~r-~~~~~l 76 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPR--------RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKV-IADRP-RTVVEI 76 (100)
T ss_dssp HHHHSHHHHHHHHHHHHH--------SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEE-CSSSC-EEEEEE
T ss_pred cccCChHHHHHHHHHHhc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEec-CCCcc-eEEEEE
Confidence 455566677888888644 27999999999999 99999999999999999985311 11222 356888
Q ss_pred chhhh
Q 017495 114 APICK 118 (370)
Q Consensus 114 ~~~~~ 118 (370)
|+.+.
T Consensus 77 t~~g~ 81 (100)
T 1ub9_A 77 TDFGM 81 (100)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 88764
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0074 Score=45.27 Aligned_cols=47 Identities=17% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.|+..|..+ +.++.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 26 ~~r~~IL~~L~~~---------~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~ 72 (106)
T 1r1u_A 26 YNRIRIMELLSVS---------EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAK 72 (106)
T ss_dssp HHHHHHHHHHHHC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3445566667655 7999999999999 999999999999999999864
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.05 Score=42.67 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 37 ~~~~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~ 102 (142)
T 3ech_A 37 PPDVHVLKLIDEQ--------RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGL 102 (142)
T ss_dssp HHHHHHHHHHHHT--------TTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC------------CCEECHHHH
T ss_pred HHHHHHHHHHHhC--------CCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCC-eeeeEECHHHH
Confidence 4666788888875 38999999999999 9999999999999999999742 112221 23366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (142)
T 3ech_A 103 AIH 105 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.044 Score=44.13 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 54 ~q~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~DrR-~~~~~LT~~G~~ 119 (161)
T 3e6m_A 54 PKLRLLSSLSAY--------GELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSI-SDADQR-KRTVVLTRKGKK 119 (161)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC----CCC-SCEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CcccCC-eeEeeECHHHHH
Confidence 345577788765 38999999999999 9999999999999999999742 222221 244778887775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 120 ~~~ 122 (161)
T 3e6m_A 120 KLA 122 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.013 Score=45.84 Aligned_cols=79 Identities=9% Similarity=0.058 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++++.+.+...+ +..|..+ +.+..||++.+ |+ ++..+.+.|+.|...|+|+.
T Consensus 24 ~~~~~l~~l~~~w~l~I---------L~~L~~g---------~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r 81 (131)
T 1yyv_A 24 PSREVLKHVTSRWGVLI---------LVALRDG---------THRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNR 81 (131)
T ss_dssp THHHHHHHHHSHHHHHH---------HHHGGGC---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHcCCcHHHH---------HHHHHcC---------CCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEE
Confidence 34555555555555444 3444544 79999999999 79 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|++ ...|.+|+.++.+.
T Consensus 82 ~~-~~~d~r-~~~y~LT~~G~~l~ 103 (131)
T 1yyv_A 82 VS-YPVVPP-HVEYSLTPLGEQVS 103 (131)
T ss_dssp EE-ECSSSC-EEEEEECHHHHHHH
T ss_pred Ee-cCCCCC-eEEEEECccHHHHH
Confidence 42 222221 34699999887554
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.008 Score=53.51 Aligned_cols=58 Identities=16% Similarity=0.276 Sum_probs=46.1
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+.|++.|... +.++|+.|||+.+|+ +..-+.|+|+.|+..|||.++. ++.|++++..-
T Consensus 33 l~IL~~l~~~-------~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~~--------~~~Y~LG~~~~ 90 (275)
T 3mq0_A 33 VRILDLVAGS-------PRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARSA--------DGTLRIGPHSL 90 (275)
T ss_dssp HHHHHHHHHC-------SSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEECT--------TSEEEECTHHH
T ss_pred HHHHHHHhhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCcEEehHHHH
Confidence 4578888765 137999999999999 9999999999999999999631 36799987543
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.016 Score=45.01 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|..+||+.+++ ++..++++|+.|...|+|...+ |+ .+.|.++.
T Consensus 25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~-----g~-~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR-----GA-YGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC-----CC-CCceEeCC
Confidence 48999999999999 9999999999999999998631 21 25677664
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0044 Score=46.76 Aligned_cols=59 Identities=17% Similarity=0.171 Sum_probs=44.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++.|+..|..+ +.++.|||+.+|+ ++..+.+.|+.|...|+|...+ +|+ ...|.+++.
T Consensus 26 ~r~~IL~~L~~~---------~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~----~gr-~~~y~l~~~ 84 (108)
T 2kko_A 26 RRLQILDLLAQG---------ERAVEAIATATGM----NLTTASANLQALKSGGLVEARR----EGT-RQYYRIAGE 84 (108)
T ss_dssp TTHHHHHHHTTC---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE----ETT-EEEEEESCH
T ss_pred HHHHHHHHHHcC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE----eCC-EEEEEEChH
Confidence 345566667655 7999999999999 9999999999999999998642 221 234666643
|
| >2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.017 Score=43.32 Aligned_cols=79 Identities=8% Similarity=0.116 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..+++++.+.+...+|. .|..+ +.+..||++.+ |+ ++..+.+.|+.|...|+|+.
T Consensus 14 ~~~~~l~~l~~~~~~~IL~---------~L~~~---------~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r 71 (107)
T 2fsw_A 14 PVRKSMQIFAGKWTLLIIF---------QINRR---------IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKK 71 (107)
T ss_dssp HHHHHHHHHTSSSHHHHHH---------HHTTS---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHcCccHHHHHH---------HHHhC---------CcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEE
Confidence 4555666666666655443 44444 79999999999 49 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. ++.|+ ....|.+|+.++.+.
T Consensus 72 ~~-~~~d~-r~~~y~LT~~G~~l~ 93 (107)
T 2fsw_A 72 KQ-YPEVP-PRVEYSLTPLGEKVL 93 (107)
T ss_dssp EE-ECSSS-CEEEEEECHHHHTTH
T ss_pred ee-cCCCC-CeeEEEECccHHHHH
Confidence 42 22222 134699999876544
|
| >3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.049 Score=42.85 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=52.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 32 ~q~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 97 (145)
T 3g3z_A 32 NLFAVLYTLATE--------GSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQE-GEQDRR-KRLLSLTETGKA 97 (145)
T ss_dssp HHHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECC-CSSCGG-GSCEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecc-CCCCCc-eeeeeEChhHHH
Confidence 556678888765 37999999999999 9999999999999999999642 222221 244778888775
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 98 ~~ 99 (145)
T 3g3z_A 98 YA 99 (145)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.012 Score=45.36 Aligned_cols=47 Identities=11% Similarity=0.217 Sum_probs=41.1
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.|+..|..+ +.++.+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 46 ~~rl~IL~~L~~~---------~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLARS---------ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 3466677888765 7999999999999 999999999999999999864
|
| >3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.11 Score=40.44 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=53.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|++.... .+.|++ ...|.+|+.+..
T Consensus 32 ~~~~iL~~l~~~--------~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~-~~~d~r-~~~~~lT~~G~~ 97 (142)
T 3bdd_A 32 TRYSILQTLLKD--------APLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKR-NPDNQR-EVLVWPTEQARE 97 (142)
T ss_dssp HHHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 455678888765 38999999999999 9999999999999999999742 222322 345888988876
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 98 ~~ 99 (142)
T 3bdd_A 98 AL 99 (142)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.021 Score=52.47 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHhhcCCC------CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC---CCCCCCeEEeccCCC-C-
Q 017495 195 MNKILDVYRGFD------GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA---PSFPGVEHVGGDMFE-N- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~------~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a---~~~~rv~~~~~D~~~-~- 262 (370)
.+.+++.+. .. +...|||||+|.|.++..|+++....++++++. +..+... ...++++++.+|+++ +
T Consensus 41 ~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~~~~ 119 (353)
T 1i4w_A 41 YNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYDWST 119 (353)
T ss_dssp HHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTCHHH
T ss_pred HHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccchhh
Confidence 445555554 33 347899999999999999998754446777764 3332221 135789999999976 2
Q ss_pred C----CC--------------C-CEEEecccccCCChhHHHHHHHH
Q 017495 263 V----PR--------------G-DAIFLKWMLHGWTDEHCLKLLKN 289 (370)
Q Consensus 263 ~----p~--------------~-D~i~~~~vLh~~~d~~~~~iL~~ 289 (370)
+ .+ . .+.+..+.=++.+.+-..++|..
T Consensus 120 ~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 120 YSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp HHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHH
T ss_pred HHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHh
Confidence 1 11 1 35677777777765544455554
|
| >2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.081 Score=42.90 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=51.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... +..|++ ...+.+|+.++.
T Consensus 46 ~~~~iL~~L~~~--------~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~ 111 (168)
T 2nyx_A 46 PQFRTLVILSNH--------GPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLP-HPTSRR-ELLAALTKRGRD 111 (168)
T ss_dssp HHHHHHHHHHHH--------CSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHHHH
Confidence 455677888765 38999999999999 9999999999999999999742 222221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 112 ~~ 113 (168)
T 2nyx_A 112 VV 113 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.12 Score=40.98 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=46.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccc-cCCCCCccccceecchhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSL-QNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~-~~~~~g~~~~~y~~~~~~~~ 119 (370)
+..++..| .. +++|..+||+.+++ ++..+.++++.|+..|+|...+ .++.|++ ...+.+|+.++.
T Consensus 40 q~~iL~~l-~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R-~~~~~lT~~G~~ 105 (151)
T 3kp7_A 40 QSHVLNML-SI--------EALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQR-LKIIKLSNKGKK 105 (151)
T ss_dssp HHHHHHHH-HH--------SCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC------------CCBEECHHHHH
T ss_pred HHHHHHHH-Hc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCC-eeEEEECHhHHH
Confidence 34478888 54 38999999999999 9999999999999999999620 0122221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 106 ~~ 107 (151)
T 3kp7_A 106 YI 107 (151)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=95.05 E-value=0.012 Score=41.67 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=46.0
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.....|++.|... +.|+.|||+++|+ +...+++.|..|...|+|.... | ++-.|.++..
T Consensus 17 ~~~~~IL~lL~~~---------g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~-----~-~PP~W~~~~~ 75 (82)
T 1oyi_A 17 EIVCEAIKTIGIE---------GATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD-----D-IPPRWFMTTE 75 (82)
T ss_dssp HHHHHHHHHHSSS---------TEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS-----S-SSCEEESCC-
T ss_pred HHHHHHHHHHHHc---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC-----C-CCCcceeccC
Confidence 3455677888865 4999999999999 9999999999999999999631 2 1355666543
|
| >3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.043 Score=43.71 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=52.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceeccccC---CCCCccccceecch
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRCSLQN---GDNGQVERVYGAAP 115 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~---~~~g~~~~~y~~~~ 115 (370)
.++-|+..|-.. |.+..|+++|++.++ + ++..+++.|+.|+..|+|++.... ...|+.-..|++|+
T Consensus 30 tR~~IL~~Ll~~------p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 30 TRLDVLHQILAQ------PDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHHHHS------TTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHHHHcC------CCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 555666666543 223689999999999 8 999999999999999999964211 01133344799999
Q ss_pred hhhhhh
Q 017495 116 ICKFLI 121 (370)
Q Consensus 116 ~~~~l~ 121 (370)
.++.+.
T Consensus 100 ~Gr~~l 105 (151)
T 3u1d_A 100 EGIALL 105 (151)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 997433
|
| >2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.018 Score=40.71 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=37.9
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|++.|... +++|+.|||+.+|+ ++..+++.|+.|...|+|..
T Consensus 4 ~Il~~L~~~--------~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 4 EILEFLNRH--------NGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHS--------CCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 467777664 37999999999999 99999999999999999985
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=94.82 E-value=0.027 Score=44.71 Aligned_cols=47 Identities=17% Similarity=0.232 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+...
T Consensus 27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (143)
T 3t8r_A 27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSV-----RGA-KGGYQLRVP 73 (143)
T ss_dssp CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC-----SSS-SSEEEESSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEec-----CCC-CCCeeecCC
Confidence 48999999999999 999999999999999999853 232 356877643
|
| >3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.19 Score=40.30 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=52.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 47 ~q~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~ 112 (162)
T 3k0l_A 47 PQFTALSVLAAK--------PNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAP-DPTHGR-RILVTVTPSGLD 112 (162)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEE-CCSSSC-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecC-CCCcCC-eeEeEECHhHHH
Confidence 345577888775 38999999999999 9999999999999999999742 222221 234778888775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 113 ~~~ 115 (162)
T 3k0l_A 113 KLN 115 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.031 Score=41.07 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=48.9
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHH----HHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKI----AARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~el----a~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.++..|... ++.+..+| |+.+++ ++..+.++|+.|+..|+++... ++ ....|.+|+.+
T Consensus 11 ~~iL~~l~~~--------~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~-~~----r~~~~~LT~~G 73 (99)
T 1tbx_A 11 AIVLAYLYDN--------EGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQ-ER----GEKRLYLTEKG 73 (99)
T ss_dssp HHHHHHHTTC--------TTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEE-ET----TEEEEEECHHH
T ss_pred HHHHHHHHHc--------CCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEe-cC----CceEEEECHHH
Confidence 4456666654 37999999 999999 9999999999999999998642 11 14568888888
Q ss_pred hhhhc
Q 017495 118 KFLIK 122 (370)
Q Consensus 118 ~~l~~ 122 (370)
+.+..
T Consensus 74 ~~~~~ 78 (99)
T 1tbx_A 74 KLFAI 78 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75543
|
| >4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.009 Score=49.66 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=52.9
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC-CCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP-TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~-~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
.+|.-=.++.|+..|..+ |.++.+|++.++ + +...+++.|+.|...|+|+..++....|..+..|+
T Consensus 18 ~~La~P~Rl~il~~L~~~---------~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~ 84 (182)
T 4g6q_A 18 DLLHHPLRWRITQLLIGR---------SLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYT 84 (182)
T ss_dssp HHTTSHHHHHHHHHTTTS---------CEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEE
Confidence 344444678888888876 899999999996 8 88999999999999999986421111233346688
Q ss_pred cchhhh
Q 017495 113 AAPICK 118 (370)
Q Consensus 113 ~~~~~~ 118 (370)
.++..-
T Consensus 85 ~~~~~~ 90 (182)
T 4g6q_A 85 LNTQAG 90 (182)
T ss_dssp ECTTTT
T ss_pred eccccc
Confidence 776543
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=94.77 E-value=0.024 Score=49.36 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=48.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+.|++.|... ++++|+.|||+.+|+ +..-+.|+|+.|+..|++..+. . ++.|++++....+
T Consensus 9 l~iL~~l~~~-------~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~----~~~Y~lg~~~~~l 69 (241)
T 2xrn_A 9 ASIMRALGSH-------PHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---P----AGGFRLGPALGQL 69 (241)
T ss_dssp HHHHHHHHTC-------TTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---G----GCEEEECSHHHHH
T ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----CCeEEECHHHHHH
Confidence 3467777654 137999999999999 9999999999999999999641 1 3679998765433
|
| >1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.034 Score=43.79 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=42.2
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+||+.+++ ++..+.+.|+.|...|+|...+ ...|.+|+.+..+.
T Consensus 22 ~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~LT~~g~~~~ 70 (142)
T 1on2_A 22 YARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK--------YRGLVLTSKGKKIG 70 (142)
T ss_dssp SCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee--------CceEEEchhHHHHH
Confidence 7999999999999 9999999999999999998631 35788998876544
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.032 Score=48.78 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=46.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.|++.|... +.++|+.|||+.+|+ +...+.|+|+.|+..|+++.+ . ++.|++++..
T Consensus 11 l~iL~~l~~~-------~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~----~~~Y~lg~~~ 67 (249)
T 1mkm_A 11 FEILDFIVKN-------PGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKL 67 (249)
T ss_dssp HHHHHHHHHC-------SSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHH
T ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----C----CCcEEECHHH
Confidence 4567777654 137999999999999 999999999999999999963 1 4779998754
|
| >2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.027 Score=47.58 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=51.9
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|..-.++.|+..|..+ |.++.+||+.+++ ++..+.+.|+.|...|+|.........|.....|.+
T Consensus 10 kaL~~~~rl~IL~~L~~~---------~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~L 76 (202)
T 2p4w_A 10 DVLGNETRRRILFLLTKR---------PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMI 76 (202)
T ss_dssp HHHHSHHHHHHHHHHHHS---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEE
T ss_pred HHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEE
Confidence 445555667777777665 8999999999999 999999999999999999974311111122455777
Q ss_pred chhh
Q 017495 114 APIC 117 (370)
Q Consensus 114 ~~~~ 117 (370)
+...
T Consensus 77 t~~~ 80 (202)
T 2p4w_A 77 KKGL 80 (202)
T ss_dssp CTTE
T ss_pred ChHH
Confidence 6654
|
| >3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.043 Score=42.71 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=50.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 34 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~r-~~~~~lT~~G~~ 99 (139)
T 3bja_A 34 VQFGVIQVLAKS--------GKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEK-NPNDQR-ETLVYLTKKGEE 99 (139)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeecc-CCCCCc-eeEEEECHHHHH
Confidence 455677777765 38999999999999 9999999999999999998642 222221 234677887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 100 ~~ 101 (139)
T 3bja_A 100 TK 101 (139)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.58 E-value=0.054 Score=42.65 Aligned_cols=69 Identities=14% Similarity=0.095 Sum_probs=50.5
Q ss_pred HHhcChHHHHhh-cccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 39 AIELNVIDIISA-ASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 39 ~~~lglfd~L~~-~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
..++.++..|.. . +++|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|++ ...+.+|+.+
T Consensus 35 ~~~~~iL~~l~~~~--------~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G 100 (147)
T 2hr3_A 35 FSQLVVLGAIDRLG--------GDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEG 100 (147)
T ss_dssp HHHHHHHHHHHHTT--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHH
T ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCC-CCCCCC-ceeeEECHHH
Confidence 455677888876 4 38999999999999 9999999999999999999642 112221 2347788877
Q ss_pred hhhh
Q 017495 118 KFLI 121 (370)
Q Consensus 118 ~~l~ 121 (370)
..+.
T Consensus 101 ~~~~ 104 (147)
T 2hr3_A 101 RRNL 104 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.044 Score=43.62 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=43.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..||++.+++ ++..+.+.|+.|...|+|+... ...+ + ...|.+|+.++.+.
T Consensus 37 ~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~-~~~d-~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 37 LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP-AESG-S-HQEYRLTDKGRALF 90 (146)
T ss_dssp CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE-CSSS-S-CEEEEECHHHHTTH
T ss_pred CCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEe-cCCC-C-eEEEEECchHHHHH
Confidence 7999999999999 9999999999999999999742 2122 2 35788998876444
|
| >3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.035 Score=43.88 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 40 ~~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~lT~~G~ 105 (148)
T 3nrv_A 40 MTEWRIISVLSSA--------SDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNG-HSEDKR-TYAINLTEMGQ 105 (148)
T ss_dssp HHHHHHHHHHHHS--------SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCBEECHHHH
T ss_pred HHHHHHHHHHHcC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCcc-eeEeEECHhHH
Confidence 3456677778765 38999999999999 9999999999999999999642 122221 24467777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 106 ~~~ 108 (148)
T 3nrv_A 106 ELY 108 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.02 Score=40.12 Aligned_cols=35 Identities=14% Similarity=0.116 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+|.|+.|||+.+|+ ++..+++-|..|+..|+|...
T Consensus 23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec
Confidence 38999999999999 999999999999999999964
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.15 Score=49.77 Aligned_cols=110 Identities=12% Similarity=0.035 Sum_probs=68.5
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------------CCCeEEEeeh-hhHHHhCCC------CCCCeE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------------PCIKGISFDL-PHVLANAPS------FPGVEH 254 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------------p~~~~~~~D~-p~~~~~a~~------~~rv~~ 254 (370)
..-+++.+. .....+|+|-+||+|.++....+.. ....++++|+ +.+...++. .+.-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 334444444 4456799999999999998765542 1346888887 666655542 134567
Q ss_pred EeccCCC-CCC------CCCEEEeccccc---------CCC-----hhHHHHHHHHHHHhCC-------CCcEEEEEee
Q 017495 255 VGGDMFE-NVP------RGDAIFLKWMLH---------GWT-----DEHCLKLLKNCWEALP-------ENGKVIIVES 305 (370)
Q Consensus 255 ~~~D~~~-~~p------~~D~i~~~~vLh---------~~~-----d~~~~~iL~~~~~~L~-------pgG~lli~e~ 305 (370)
..+|.+. +.. ..|+|+.+==+- .++ .+.-..++..+.+.|+ |||++.++-+
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP 363 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVP 363 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEec
Confidence 7788775 321 129998843221 110 1112457888888887 6999998654
|
| >3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.03 Score=44.00 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=50.7
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++
T Consensus 37 ~~~~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~ 102 (143)
T 3oop_A 37 PEQWSVLEGIEAN--------EPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREI-STEDRR-ISLLSLTDKGR 102 (143)
T ss_dssp HHHHHHHHHHHHH--------SSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-----CC-SCEEEECHHHH
T ss_pred HHHHHHHHHHHHc--------CCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccC-CCccCc-eeeeeECHHHH
Confidence 3455677777765 38999999999999 9999999999999999999642 222221 23477888776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (143)
T 3oop_A 103 KET 105 (143)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.061 Score=42.22 Aligned_cols=67 Identities=7% Similarity=0.025 Sum_probs=49.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|. . ++.|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|++ ...+.+|+.+..
T Consensus 38 ~~~~iL~~l~-~--------~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~r-~~~~~lT~~G~~ 102 (146)
T 2gxg_A 38 LDFLVLRATS-D--------GPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVR-DREDRR-KILIEITEKGLE 102 (146)
T ss_dssp HHHHHHHHHT-T--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHh-c--------CCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeec-CCCCCc-eEEEEECHHHHH
Confidence 4555677777 4 38999999999999 9999999999999999999642 222221 234677877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (146)
T 2gxg_A 103 TF 104 (146)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.012 Score=52.00 Aligned_cols=58 Identities=12% Similarity=0.100 Sum_probs=46.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.|++.|... ++++|+.|||+++|+ +..-+.|+|+.|+..|++.++. . ++.|++++..-
T Consensus 10 ~IL~~l~~~-------~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~----~~~Y~lG~~~~ 67 (260)
T 3r4k_A 10 TLLTYFNHG-------RLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---G----ARSYRLGPQVL 67 (260)
T ss_dssp HHHTTCBTT-------BSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---S----SSEEEECTTHH
T ss_pred HHHHHHhhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---C----CCcEEcCHHHH
Confidence 456666543 148999999999999 9999999999999999999741 1 37899987543
|
| >2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.074 Score=42.24 Aligned_cols=69 Identities=14% Similarity=0.131 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.++.
T Consensus 48 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 113 (153)
T 2pex_A 48 PQYLVMLVLWET--------DERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTR-AASDER-QVIIALTETGRA 113 (153)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CcccCC-eeEeeECHHHHH
Confidence 355577777765 38999999999999 9999999999999999999642 112211 234778888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 114 ~~~ 116 (153)
T 2pex_A 114 LRS 116 (153)
T ss_dssp GGG
T ss_pred HHH
Confidence 554
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.054 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 62 LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 62 ~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
++..+||..+++ +++.+++.++.|...|+++.. ++.|.+|+.+..+..
T Consensus 21 ~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~---------~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 21 SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELLE 68 (95)
T ss_dssp BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHHH
T ss_pred CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE---------CCeeEEChhHHHHHH
Confidence 899999999999 999999999999999999963 356999999985553
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.097 Score=46.95 Aligned_cols=120 Identities=22% Similarity=0.198 Sum_probs=68.7
Q ss_pred CCCeEEEEcCcccHHHHH----HHhhCCCCeE--EEeehhhHHHhC------------------CC--CCC--CeEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGM----ITSRYPCIKG--ISFDLPHVLANA------------------PS--FPG--VEHVGGD 258 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~----l~~~~p~~~~--~~~D~p~~~~~a------------------~~--~~r--v~~~~~D 258 (370)
+.-+|||+|=|+|..... +.+..|..+. +.++. ..+... .. ..+ +++..||
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek-~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD 174 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEK-ELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD 174 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEES-SCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecH-HHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence 446899999999976543 2344677654 44442 001000 00 022 3567777
Q ss_pred CCCC---CCC--CCEEEecccccCC-ChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcC
Q 017495 259 MFEN---VPR--GDAIFLKWMLHGW-TDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTT 332 (370)
Q Consensus 259 ~~~~---~p~--~D~i~~~~vLh~~-~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 332 (370)
+.+. .+. .|++++--.--.- |+---..+++.++++++|||.|.- .+
T Consensus 175 a~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt-------------------------- 226 (308)
T 3vyw_A 175 ARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS-------------------------- 226 (308)
T ss_dssp HHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC--------------------------
T ss_pred HHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee--------------------------
Confidence 7652 232 2888774321111 111124789999999999998763 11
Q ss_pred CCcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 333 GGRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 333 ~~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
.....++-|++|||++.++-..+
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC-
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCC
Confidence 01347788999999987665444
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=49.98 Aligned_cols=59 Identities=14% Similarity=0.062 Sum_probs=47.3
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.|++.|... ++++++.|||+.+|+ +..-+.|+|+.|+..|++..+ ++.|++++....+.
T Consensus 18 ~iL~~l~~~-------~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~---------~~~Y~Lg~~~~~l~ 76 (257)
T 2g7u_A 18 AVLLAFDAQ-------RPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS---------GGRWSLTPRVLSIG 76 (257)
T ss_dssp HHHHTCSSS-------CSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECGGGHHHH
T ss_pred HHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC---------CCEEEEcHHHHHHH
Confidence 456666542 137999999999999 999999999999999999963 37899988765444
|
| >3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.082 Score=42.42 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++.
T Consensus 53 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~~ 118 (162)
T 3cjn_A 53 AKMRALAILSAK--------DGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREV-DSDDQR-SSRVYLTPAGRA 118 (162)
T ss_dssp HHHHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C--CCS-SEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 456677888765 38999999999999 9999999999999999999642 112221 244777877764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 119 ~~ 120 (162)
T 3cjn_A 119 VY 120 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.037 Score=44.77 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|.++||+.+++ ++..++++|..|...|+|... .|+ .+.|.+..
T Consensus 43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSI-----RGA-HGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CST-TCEEEECS
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEe-----cCC-CCceEecC
Confidence 48999999999999 999999999999999999963 132 35677654
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.11 Score=40.30 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=51.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... | +++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 32 ~~~~vL~~l~~~-----~-~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~D~R-~~~~~LT~~G~~ 99 (139)
T 3eco_A 32 EQGHTLGYLYAH-----Q-QDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYV-DAQDTR-RKNIGLTTSGIK 99 (139)
T ss_dssp HHHHHHHHHHHS-----T-TTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC--C-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhc-----C-CCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecC-CCCCCC-eeeeEECHHHHH
Confidence 445567777664 1 237999999999999 9999999999999999999742 223321 234677887765
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 100 ~~~ 102 (139)
T 3eco_A 100 LVE 102 (139)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.056 Score=42.03 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|...|+|+... ++.|++ ...+.+|+.++.
T Consensus 35 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~ 100 (138)
T 1jgs_A 35 AQFKVLCSIRCA--------ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAA 100 (138)
T ss_dssp HHHHHHHHHHHH--------SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHH
T ss_pred HHHHHHHHHHhc--------CCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecC-CcccCc-eeEeEEChhHHH
Confidence 345567777765 37999999999999 9999999999999999999742 222221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 101 ~~ 102 (138)
T 1jgs_A 101 IC 102 (138)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.058 Score=42.99 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=49.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 44 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~ 109 (155)
T 3cdh_A 44 PEWRVLACLVDN--------DAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVA-DAKDKR-RVRVRLTDDGRA 109 (155)
T ss_dssp HHHHHHHHHSSC--------SCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC--------CCCEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCcCC-eeEeEECHHHHH
Confidence 345567777664 38999999999999 9999999999999999999642 112221 234778887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 110 ~~ 111 (155)
T 3cdh_A 110 LA 111 (155)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.041 Score=42.86 Aligned_cols=68 Identities=7% Similarity=0.115 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... .+.|+ ....+.+|+.+..
T Consensus 39 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~-R~~~~~lT~~G~~ 104 (140)
T 2nnn_A 39 TQWAALVRLGET--------GPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSA-DPDDG-RRLLVSLSPAGRA 104 (140)
T ss_dssp HHHHHHHHHHHH--------SSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEE-ETTEE-EEEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCC-CeeeeEECHhHHH
Confidence 456678888765 38999999999999 9999999999999999999642 11111 1234777877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 105 ~~ 106 (140)
T 2nnn_A 105 EL 106 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.12 Score=40.71 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=42.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... +++++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 42 ~q~~vL~~l~~~------~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~DrR-~~~~~LT~~G~~ 109 (148)
T 3jw4_A 42 QQGRMIGYIYEN------QESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRI-PENNAR-QKNIYVLPKGAA 109 (148)
T ss_dssp HHHHHHHHHHHH------TTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC----------CCCCBCHHHHH
T ss_pred HHHHHHHHHHhC------CCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeC-CCCCch-hheeeECHHHHH
Confidence 344566777653 1138999999999999 9999999999999999999642 222221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 110 ~~ 111 (148)
T 3jw4_A 110 LV 111 (148)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=94.01 E-value=0.33 Score=38.07 Aligned_cols=67 Identities=4% Similarity=0.014 Sum_probs=49.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.+
T Consensus 44 ~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~~ 109 (150)
T 2rdp_A 44 QFVALQWLLEE--------GDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVR-DEHDRR-VVRIRLLEKGERI 109 (150)
T ss_dssp HHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CCC----CEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCcc-eeEeEECHhHHHH
Confidence 45577777765 38999999999999 9999999999999999999642 222221 2347778777654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 110 ~ 110 (150)
T 2rdp_A 110 I 110 (150)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.077 Score=42.25 Aligned_cols=69 Identities=12% Similarity=0.016 Sum_probs=51.9
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++
T Consensus 44 ~~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~ 109 (154)
T 2eth_A 44 TTELYAFLYVALF--------GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGK 109 (154)
T ss_dssp HHHHHHHHHHHHH--------CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHH
T ss_pred HHHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeC-CCCCcc-eeEEEECHHHH
Confidence 3466678888765 37999999999999 9999999999999999999742 222221 23467787776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 110 ~~~ 112 (154)
T 2eth_A 110 EIF 112 (154)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.12 Score=41.31 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=48.8
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.+.
T Consensus 53 ~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYRE--------DGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQR-DEKDRR-SYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHS--------CSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC---C-CEEEEECHHHHHHH
T ss_pred HHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCC-eeEEEECHHHHHHH
Confidence 4456667654 38999999999999 9999999999999999999742 222321 23467788776554
Q ss_pred c
Q 017495 122 K 122 (370)
Q Consensus 122 ~ 122 (370)
.
T Consensus 119 ~ 119 (159)
T 3s2w_A 119 P 119 (159)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.07 Score=39.00 Aligned_cols=55 Identities=22% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++.+..+||+.+++ +...|+|.|..|...|+|.... . +||+ +.-.+|+.++.+.
T Consensus 34 g~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~-~-~D~R--~~v~LT~~G~~~l 88 (96)
T 2obp_A 34 ATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV-E-ADGR--GHASLTQEGAALA 88 (96)
T ss_dssp CCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-C-TTSC--EEEEECHHHHHHH
T ss_pred CCCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeec-C-CCCc--eeEEECHHHHHHH
Confidence 347899999999999 9999999999999999999743 2 4552 3457788776444
|
| >2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.048 Score=47.45 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.|.|+.|...|+++... . ...|.+|+.+..
T Consensus 153 ~~~~IL~~L~~~--------~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r----~~~~~LT~~G~~ 213 (244)
T 2wte_A 153 EEMKLLNVLYET--------KGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---K----DRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHHHHHH--------TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---T----TTEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---C----ccEEEECHHHHH
Confidence 345566776554 37999999999999 9999999999999999999631 1 367999998875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 214 l~~ 216 (244)
T 2wte_A 214 VIK 216 (244)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.041 Score=44.66 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=39.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
.++|.++||+.+++ ++..++++|..|...|+|+.. .|+ .+.|.+...
T Consensus 27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~-----rG~-~GGy~Lar~ 73 (162)
T 3k69_A 27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGT-----VGK-NGGYQLDLA 73 (162)
T ss_dssp SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEE-----CST-TCEEECCSC
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee-----cCC-CCCeEecCC
Confidence 48999999999999 999999999999999999853 232 356887654
|
| >3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.05 Score=42.81 Aligned_cols=68 Identities=15% Similarity=0.255 Sum_probs=47.8
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|..+ ++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.+.
T Consensus 38 ~~~~~iL~~l~~~---------~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~-~~~d~R-~~~~~lT~~g~ 102 (146)
T 3tgn_A 38 NTQEHILMLLSEE---------SLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSK-DSKDAR-VIFYQLTDLAR 102 (146)
T ss_dssp HHHHHHHHHHTTC---------CCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC------------CCEECGGGH
T ss_pred HHHHHHHHHHHhC---------CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEecc-CCCCCc-eeEEEECHhHH
Confidence 3556677888776 4999999999999 9999999999999999999642 112221 24466777665
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 103 ~~~ 105 (146)
T 3tgn_A 103 PIA 105 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.93 E-value=0.027 Score=49.64 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
+++++.|||+.+|+ +..-+.|+|+.|+..|++..+. ++.|++++..-
T Consensus 37 ~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~--------~~~Y~lg~~~~ 83 (260)
T 2o0y_A 37 PTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA--------DGSYSLGPEML 83 (260)
T ss_dssp SSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHH
T ss_pred CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC--------CCeEEecHHHH
Confidence 38999999999999 9999999999999999999631 23899987543
|
| >4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.1 Score=39.75 Aligned_cols=75 Identities=19% Similarity=0.192 Sum_probs=54.1
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQV 107 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~ 107 (370)
+.++-.+++-|+..|..+ |.+--+|++.+ ++ ++..+...|+-|...|+|+....+...|+.
T Consensus 6 ~l~~g~l~~~IL~lL~~~---------p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~ 72 (117)
T 4esf_A 6 EMLKGSLEGCVLEIISRR---------ETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPP 72 (117)
T ss_dssp HHHHHHHHHHHHHHHHHS---------CBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----C
T ss_pred HHHHChHHHHHHHHHHcC---------CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCC
Confidence 344555666677778776 89999999887 67 999999999999999999975221122333
Q ss_pred ccceecchhhhhhh
Q 017495 108 ERVYGAAPICKFLI 121 (370)
Q Consensus 108 ~~~y~~~~~~~~l~ 121 (370)
...|++|+.++...
T Consensus 73 rk~Y~LT~~G~~~l 86 (117)
T 4esf_A 73 RKFYSLNEAGRQEL 86 (117)
T ss_dssp EEEEEECHHHHHHH
T ss_pred ceEEEECHHHHHHH
Confidence 56799999987444
|
| >2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.027 Score=41.53 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=45.4
Q ss_pred HHHHhcChHHHH-hhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 37 KSAIELNVIDII-SAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 37 ~~~~~lglfd~L-~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.--.++.++..| ..+ +.++.|||+.+|+ ++..+++.|+.|... ++...+ +|+ ...|++++
T Consensus 25 ~~~~Rl~IL~~l~~~~---------~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~----~gr-~~~y~l~~ 85 (99)
T 2zkz_A 25 AHPMRLKIVNELYKHK---------ALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNR----QGL-EIYYSINN 85 (99)
T ss_dssp CSHHHHHHHHHHHHHS---------CEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEE----ETT-EEEEECCC
T ss_pred CCHHHHHHHHHHHHCC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheE----eCc-EEEEEECh
Confidence 334555666443 344 7999999999999 999999999999999 998642 232 34577775
Q ss_pred hh
Q 017495 116 IC 117 (370)
Q Consensus 116 ~~ 117 (370)
..
T Consensus 86 ~~ 87 (99)
T 2zkz_A 86 PK 87 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.28 Score=38.72 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=49.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... .+.|++ ...+.+|+.+..+
T Consensus 39 ~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~~ 104 (155)
T 1s3j_A 39 QLFVLASLKKH--------GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIK 104 (155)
T ss_dssp HHHHHHHHHHH--------SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCc-eEEEEECHHHHHH
Confidence 34467777765 37999999999999 9999999999999999999742 222221 2346777777644
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 105 ~ 105 (155)
T 1s3j_A 105 F 105 (155)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.034 Score=39.39 Aligned_cols=48 Identities=17% Similarity=0.263 Sum_probs=40.7
Q ss_pred HhcChHHHHhhcccccCCCC-CCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHG-ELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~-~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|++.|... + ++.|++||++.+ ++ +..-+.|.|+.|+..|+|...
T Consensus 18 ~r~~IL~~l~~~-------~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEP-------DNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSG-------GGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhC-------CCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEE
Confidence 455688888753 1 389999999999 88 999999999999999999964
|
| >2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.075 Score=41.54 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=51.0
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.+.++.|...|+|.... ++.|++ ...+.+|+.+..
T Consensus 38 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~-~~~d~R-~~~~~lT~~G~~ 103 (142)
T 2bv6_A 38 PQFLVLTILWDE--------SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSET 103 (142)
T ss_dssp HHHHHHHHHHHS--------SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCcc-eEEEEEChHHHH
Confidence 456677777765 37999999999999 9999999999999999999742 212221 235677887764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 104 ~~ 105 (142)
T 2bv6_A 104 IR 105 (142)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.031 Score=43.87 Aligned_cols=69 Identities=16% Similarity=0.084 Sum_probs=48.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 37 ~q~~vL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 102 (140)
T 3hsr_A 37 TGYIVLMAIEND--------EKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTR-EEKDER-NLQISLTEQGKA 102 (140)
T ss_dssp HHHHHHHHSCTT--------CEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC---------CEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecC-CCCCcc-eeeeeEChHHHH
Confidence 344456666554 48999999999999 9999999999999999999742 222221 235778887775
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 103 ~~~ 105 (140)
T 3hsr_A 103 IKS 105 (140)
T ss_dssp THH
T ss_pred HHH
Confidence 543
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.023 Score=50.20 Aligned_cols=55 Identities=15% Similarity=0.115 Sum_probs=45.0
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
.|++.|... ..++++.|||+.+|+ +..-+.|+|+.|+..|++..+ ++.|++++..
T Consensus 25 ~iL~~l~~~-------~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~---------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 25 AVIRCFDHR-------NQRRTLSDVARATDL----TRATARRFLLTLVELGYVATD---------GSAFWLTPRV 79 (265)
T ss_dssp HHHHTCCSS-------CSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES---------SSEEEECGGG
T ss_pred HHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec---------CCEEEEcHHH
Confidence 456666542 137999999999999 999999999999999999962 3789998754
|
| >2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.062 Score=43.13 Aligned_cols=68 Identities=21% Similarity=0.273 Sum_probs=48.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.++.
T Consensus 50 ~~~~iL~~l~~~--------~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 115 (162)
T 2fa5_A 50 PEWRVITILALY--------PGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRET-HGDDRR-RSMLALSPAGRQ 115 (162)
T ss_dssp HHHHHHHHHHHS--------TTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-----------CCCEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeec-CCCCCC-eeEEEECHHHHH
Confidence 345577788765 38999999999999 9999999999999999999632 112221 244677777764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 116 ~~ 117 (162)
T 2fa5_A 116 VY 117 (162)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.36 Score=37.92 Aligned_cols=68 Identities=15% Similarity=0.197 Sum_probs=50.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... .+.|++ ...+.+|+.++.
T Consensus 41 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~-~~~d~R-~~~~~lT~~G~~ 106 (152)
T 3bj6_A 41 GQRAILEGLSLT--------PGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRT-NPEHAR-SHRYWLTPRGEA 106 (152)
T ss_dssp HHHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CSSSTT-SCEEEECHHHHH
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecC-Cccccc-ceeeEEChhhHH
Confidence 345577777765 38999999999999 9999999999999999999742 112221 234677877764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 107 ~~ 108 (152)
T 3bj6_A 107 II 108 (152)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.065 Score=38.98 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=41.7
Q ss_pred CCCHHHHHHHCCCCCCCCcch-HHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFL-LDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~-l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|..+||+.+++ ++.. +.++++.|+..|+|..++ .|++ ...+.+|+.++.+.
T Consensus 30 ~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~---~drR-~~~~~LT~~G~~~~ 83 (95)
T 2pg4_A 30 EPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEET---LSYR-VKTLKLTEKGRRLA 83 (95)
T ss_dssp CCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEE---EETT-EEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCC---CCCC-eEEEEECHhHHHHH
Confidence 6999999999999 9999 999999999999998432 2211 24467888776544
|
| >3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.33 Score=37.59 Aligned_cols=69 Identities=10% Similarity=0.180 Sum_probs=49.4
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... + ++++|..+||+.+++ ++..+.+.++.|+..|+|...+ ++.|++ ...+.+|+.+..+
T Consensus 36 ~~~iL~~l~~~-----~-~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~i~lT~~G~~~ 103 (141)
T 3bro_A 36 QMTIIDYLSRN-----K-NKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANKL 103 (141)
T ss_dssp HHHHHHHHHHT-----T-TSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHTT
T ss_pred HHHHHHHHHHC-----C-CCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeC-CCcCCC-eeeeEECHHHHHH
Confidence 44567777765 1 127999999999999 9999999999999999998642 222221 2346677776544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 104 ~ 104 (141)
T 3bro_A 104 E 104 (141)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.069 Score=41.88 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred hcChHHHH-hhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 41 ELNVIDII-SAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L-~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++.++..| ... ++.|..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.+..
T Consensus 39 ~~~iL~~l~~~~--------~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 104 (146)
T 2fbh_A 39 RWLVLLHLARHR--------DSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADV 104 (146)
T ss_dssp HHHHHHHHHHCS--------SCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHH
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecC-CCcccC-eeeeEECHhHHH
Confidence 44567777 443 48999999999999 9999999999999999999742 112211 233666766654
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 105 ~~ 106 (146)
T 2fbh_A 105 LI 106 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.046 Score=43.68 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=37.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
++|..+||+.+++ ++..++++|..|...|+|+.. .| .+.|.+...
T Consensus 30 ~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~-----rG--~GGy~L~~~ 74 (149)
T 1ylf_A 30 LCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLKD 74 (149)
T ss_dssp GCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESSC
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEc-----cC--CCceEeCCC
Confidence 8999999999999 999999999999999999863 23 366777654
|
| >2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.17 Score=38.55 Aligned_cols=73 Identities=14% Similarity=0.163 Sum_probs=53.9
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC--------CCCCCCc-chHHHHHHHHhcCCceeccccCCCCC
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP--------TKNPDAP-FLLDRMLSLLASYDILRCSLQNGDNG 105 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~--------~~~~~~~-~~l~~~L~~L~~~g~l~~~~~~~~~g 105 (370)
++..-.++-|+..|..+ |.+..+|++.+. + ++ ..+.+.|+.|...|+|+....+ .+|
T Consensus 9 ~~~~~~~~~IL~~L~~~---------~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~-~~~ 74 (118)
T 2esh_A 9 FRGWWLASTILLLVAEK---------PSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDT-TVS 74 (118)
T ss_dssp HHHHHHHHHHHHHHHHS---------CBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEEC-SSS
T ss_pred cccchHHHHHHHHHHcC---------CCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeec-CCC
Confidence 34445666777788776 899999999873 6 88 9999999999999999874311 123
Q ss_pred ccccceecchhhhhhh
Q 017495 106 QVERVYGAAPICKFLI 121 (370)
Q Consensus 106 ~~~~~y~~~~~~~~l~ 121 (370)
+....|.+|+.++.+.
T Consensus 75 ~~r~~Y~LT~~G~~~l 90 (118)
T 2esh_A 75 PPRKIYRITPQGKLYL 90 (118)
T ss_dssp SCEEEEEECHHHHHHH
T ss_pred CCceEEEEChHHHHHH
Confidence 3345699999887443
|
| >2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.073 Score=42.27 Aligned_cols=68 Identities=13% Similarity=0.067 Sum_probs=50.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec--cccCCCCCccccceecchhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC--SLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~--~~~~~~~g~~~~~y~~~~~~ 117 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+. .. ++.|++ ...+.+|+.+
T Consensus 42 ~~~~iL~~l~~~--------~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~~~d~R-~~~~~LT~~G 107 (154)
T 2qww_A 42 QQLAMINVIYST--------PGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKT-IPNDSM-DLTLKLSKKG 107 (154)
T ss_dssp HHHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC---CTTCT-TCEEEECHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcC-CCCCCc-eeEeEECHHH
Confidence 345677777765 37999999999999 99999999999999999996 32 222221 2357788887
Q ss_pred hhhh
Q 017495 118 KFLI 121 (370)
Q Consensus 118 ~~l~ 121 (370)
+.+.
T Consensus 108 ~~~~ 111 (154)
T 2qww_A 108 EDLS 111 (154)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
|
| >3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.053 Score=42.14 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=49.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... ++.|++ ...+.+|+.+..
T Consensus 30 ~~~~iL~~l~~~--------~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~-~~~d~R-~~~~~lT~~G~~ 95 (138)
T 3bpv_A 30 AQVACLLRIHRE--------PGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQ-DPENRR-RYILEVTRRGEE 95 (138)
T ss_dssp HHHHHHHHHHHS--------TTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeec-CCCCce-eEEeeECHhHHH
Confidence 345567777765 38999999999999 9999999999999999999742 111111 123667777664
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 96 ~~ 97 (138)
T 3bpv_A 96 II 97 (138)
T ss_dssp TH
T ss_pred HH
Confidence 44
|
| >1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.30 E-value=0.077 Score=41.55 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=49.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... +++|..+||+.+++ ++..+.+.++.|...|+|.... ++.|++ ...+.+|+.+..+
T Consensus 31 ~~~iL~~l~~~--------~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~-~~~d~R-~~~~~lT~~G~~~ 96 (144)
T 1lj9_A 31 QYLYLVRVCEN--------PGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNV 96 (144)
T ss_dssp HHHHHHHHHHS--------TTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHH
T ss_pred HHHHHHHHHHC--------cCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCc-eeeeEEChhHHHH
Confidence 44467777665 37999999999999 9999999999999999999742 222221 2347778877654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 97 ~ 97 (144)
T 1lj9_A 97 Y 97 (144)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.07 Score=41.97 Aligned_cols=69 Identities=12% Similarity=0.101 Sum_probs=51.9
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.+..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+..
T Consensus 41 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~-~~~d~R-~~~~~LT~~G~~ 106 (147)
T 1z91_A 41 PQYLALLLLWEH--------ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGAL 106 (147)
T ss_dssp HHHHHHHHHHHH--------SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHS
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHhHHH
Confidence 456677777765 37999999999999 9999999999999999999742 222222 234778888875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 107 ~~~ 109 (147)
T 1z91_A 107 LKE 109 (147)
T ss_dssp GGG
T ss_pred HHH
Confidence 554
|
| >2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.054 Score=42.30 Aligned_cols=68 Identities=12% Similarity=0.040 Sum_probs=50.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 37 ~~~~iL~~l~~~--------~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~-~~~d~R-~~~~~lT~~G~~ 102 (142)
T 2fbi_A 37 QQWRVIRILRQQ--------GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQ 102 (142)
T ss_dssp HHHHHHHHHHHH--------CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeec-CCCCCC-eeEEEECHHHHH
Confidence 456677788765 37999999999999 9999999999999999998642 111111 233677877765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (142)
T 2fbi_A 103 CF 104 (142)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.044 Score=43.50 Aligned_cols=68 Identities=10% Similarity=0.016 Sum_probs=48.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|+..+ ++.|++ ...+.+|+.++.
T Consensus 42 ~q~~iL~~l~~~--------~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 107 (149)
T 4hbl_A 42 SQYLVMLTLWEE--------NPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRER-QQSDKR-QLIITLTDNGQQ 107 (149)
T ss_dssp HHHHHHHHHHHS--------SSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC-----------CEEEECSHHHH
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCC-CCCCcc-eeeeeECHHHHH
Confidence 456677777765 38999999999999 9999999999999999999642 222221 234677777764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 108 ~~ 109 (149)
T 4hbl_A 108 QQ 109 (149)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.16 Score=38.54 Aligned_cols=75 Identities=11% Similarity=0.125 Sum_probs=54.3
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCC
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNG 105 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g 105 (370)
+.++-.+++-|+..|..+ |.+--+|.+.+ ++ ++..+.+.|+.|...|+|+....+..+|
T Consensus 7 ~~~~g~l~~~IL~~L~~~---------~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~ 73 (116)
T 3f8b_A 7 EMLRAQTNVILLNVLKQG---------DNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQG 73 (116)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----
T ss_pred HHHhchHHHHHHHHHHhC---------CCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCC
Confidence 455555667777788876 88988998876 57 8999999999999999999642111233
Q ss_pred ccccceecchhhhhhh
Q 017495 106 QVERVYGAAPICKFLI 121 (370)
Q Consensus 106 ~~~~~y~~~~~~~~l~ 121 (370)
+....|++|+.++...
T Consensus 74 ~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 74 GRRKYYRLTEIGHENM 89 (116)
T ss_dssp CCEEEEEECHHHHHHH
T ss_pred CCceEEEECHHHHHHH
Confidence 3356699999887443
|
| >2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.21 E-value=0.048 Score=41.54 Aligned_cols=47 Identities=11% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
-.++.++..|..+ +.++.+||+.+++ ++..+.+.|+.|...|++...
T Consensus 32 ~~~~~il~~L~~~---------~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 32 PSRLMILTQLRNG---------PLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHHHHC---------CCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHHHHC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 3456666777665 6899999999999 999999999999999999853
|
| >1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=93.20 E-value=0.06 Score=39.80 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=40.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++.|+..|... ++.|..+||+.+++ ++..+.+.|+.|...|+|...
T Consensus 21 ~~~~il~~l~~~--------~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~ 67 (109)
T 1sfx_A 21 SDVRIYSLLLER--------GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 355567777654 37999999999999 999999999999999999964
|
| >2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.1 Score=40.48 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..|.++||+.+++ ++..+.+.|+.|...|+|...
T Consensus 51 ~ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~ 84 (128)
T 2vn2_A 51 FPTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE 84 (128)
T ss_dssp SCCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999 999999999999999999963
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.09 E-value=0.1 Score=46.84 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS 248 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 248 (370)
.+..++..+. .+...|||++||+|..+..+.+. +.+++++|+ +.+++.+++
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~ 275 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKE 275 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHH
Confidence 4455555543 35679999999999999998874 568999998 888776654
|
| >3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.078 Score=41.97 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ .-.+.+|+.++
T Consensus 39 ~~q~~vL~~l~~~-------~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~ 105 (150)
T 3fm5_A 39 VRSYSVLVLACEQ-------AEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTL-DPSDRR-NKLIAATEEGR 105 (150)
T ss_dssp HHHHHHHHHHHHS-------TTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC-------------CEECHHHH
T ss_pred HHHHHHHHHHHhC-------CCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeC-Cccccc-hheeeECHHHH
Confidence 3455667777644 136899999999999 9999999999999999999642 112211 12366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 106 ~~~ 108 (150)
T 3fm5_A 106 RLR 108 (150)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.06 E-value=0.061 Score=42.19 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=50.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 34 ~~~~iL~~l~~~--------~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~-~~~d~r-~~~~~lT~~G~~ 99 (145)
T 2a61_A 34 AQFDILQKIYFE--------GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEE 99 (145)
T ss_dssp HHHHHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecC-CCCCCc-eEEEEECHHHHH
Confidence 456677777765 37999999999999 9999999999999999999742 111111 224677887765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 100 ~~ 101 (145)
T 2a61_A 100 VI 101 (145)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=93.05 E-value=0.069 Score=43.31 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=48.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++++|..+||+.+++ ++..+.++++.|+..|+|+... +..|++ ...+.+|+.++.
T Consensus 54 ~q~~vL~~L~~~-------~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~ 120 (166)
T 3deu_A 54 THWVTLHNIHQL-------PPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEP 120 (166)
T ss_dssp HHHHHHHHHHHS-------CSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHH
T ss_pred HHHHHHHHHHHc-------CCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeC-CCCCCC-eeEEEECHHHHH
Confidence 456677778762 137999999999999 9999999999999999999742 212221 234667777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 121 ~~ 122 (166)
T 3deu_A 121 LI 122 (166)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.12 Score=40.43 Aligned_cols=49 Identities=20% Similarity=0.049 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++.|..+||+.+++ ++..+.+.|+.|...|+|... .+.|.+|+.+..+.
T Consensus 30 ~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~---------~~~~~Lt~~g~~~~ 78 (139)
T 2x4h_A 30 EGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK---------EDGVWITNNGTRSI 78 (139)
T ss_dssp SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec---------CCeEEEChhHHHHH
Confidence 37999999999999 999999999999999999963 25688888776443
|
| >3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.23 Score=39.56 Aligned_cols=68 Identities=9% Similarity=0.083 Sum_probs=48.1
Q ss_pred HhcChHHHHh-hcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 40 IELNVIDIIS-AASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 40 ~~lglfd~L~-~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
.++.++..|. .. ++++..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+.
T Consensus 48 ~~~~iL~~L~~~~--------~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~-~~~d~R-~~~~~lT~~G~ 113 (160)
T 3boq_A 48 AKFDAMAQLARNP--------DGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAM-SADDRR-SFSAKLTDAGL 113 (160)
T ss_dssp HHHHHHHHHHHCT--------TCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC----------CEEEECHHHH
T ss_pred HHHHHHHHHHHcC--------CCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeec-CCCCCC-eEEEEEChhHH
Confidence 3556788883 33 38999999999999 9999999999999999999642 112221 23366777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 114 ~~~ 116 (160)
T 3boq_A 114 TTF 116 (160)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=92.82 E-value=0.093 Score=38.19 Aligned_cols=52 Identities=8% Similarity=0.134 Sum_probs=41.1
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++|..+||+.+++ ++..+.++++.|...|+|... .|++ ...|.+|+.+..+.
T Consensus 30 ~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~----~d~R-~~~v~LT~~G~~~~ 81 (95)
T 2qvo_A 30 DVYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECE----LEGR-TKIIRLTDKGQKIA 81 (95)
T ss_dssp CEEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred CcCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCC----CCCC-eEEEEEChhHHHHH
Confidence 4899999999999 999999999999999999421 2221 23588898887554
|
| >3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.25 Score=39.82 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=47.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... | ++++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 47 ~q~~vL~~l~~~-----~-~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~ 114 (168)
T 3u2r_A 47 QQYNTLRLLRSV-----H-PEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTR-KPENRR-VVEVALTDAGLK 114 (168)
T ss_dssp HHHHHHHHHHHH-----T-TSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHhc-----C-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecC-CCCCCC-eeEeEECHHHHH
Confidence 455567777663 1 138999999999999 9999999999999999999742 222211 124667877765
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 115 ~~~ 117 (168)
T 3u2r_A 115 LLK 117 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A | Back alignment and structure |
|---|
Probab=92.73 E-value=0.031 Score=48.18 Aligned_cols=73 Identities=8% Similarity=0.162 Sum_probs=52.7
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCC-CCccccce
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGD-NGQVERVY 111 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~-~g~~~~~y 111 (370)
..+|..-.++.|+..|..+ |.++.+||+.+|+ ++..+.+.|+.|...|+|.....++. .|+....|
T Consensus 6 lkaL~~~~R~~IL~~L~~g---------~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y 72 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLTCM---------ECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYY 72 (232)
T ss_dssp HHHHTSHHHHHHHHHHTTT---------TTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC-----CEEEE
T ss_pred HHHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEE
Confidence 4455556677788888865 8999999999999 99999999999999999996211110 11112457
Q ss_pred ecchhhh
Q 017495 112 GAAPICK 118 (370)
Q Consensus 112 ~~~~~~~ 118 (370)
++++.+.
T Consensus 73 ~Lt~~~~ 79 (232)
T 2qlz_A 73 KISIAKS 79 (232)
T ss_dssp EECCCEE
T ss_pred EEccchh
Confidence 7776543
|
| >3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.13 Score=39.06 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=55.4
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
.+.++-.+++-|+..|..+ |.+--+|++.+ ++ ++..+...|+-|...|+|+....+.+.|+
T Consensus 7 ~~l~~g~l~~~IL~lL~~~---------p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~ 73 (116)
T 3hhh_A 7 TELLKGILEGLVLAIIQRK---------ETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGP 73 (116)
T ss_dssp HHHHTTHHHHHHHHHHHHS---------CBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--C
T ss_pred HHHHhhhHHHHHHHHHhcC---------CCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCC
Confidence 3445555666677788876 89999999987 57 89999999999999999986422112344
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
....|++|+.++...
T Consensus 74 ~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 74 MRKFYRLTSSGEAEL 88 (116)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred CceEEEECHHHHHHH
Confidence 456799999987443
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.52 E-value=0.096 Score=41.55 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=66.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehh-hHHHhCCCCCCCeEEeccCCCCCCC-----C-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLP-HVLANAPSFPGVEHVGGDMFENVPR-----G-D 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p-~~~~~a~~~~rv~~~~~D~~~~~p~-----~-D 267 (370)
+.+.+..+.+ -..-|||+|=|+|..=.+|.+.+|+..+.++|.. .+-.... -+.-.++.||+.+..|. + .
T Consensus 30 L~~a~~~v~~--~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~-P~~e~~ilGdi~~tL~~~~~r~g~~ 106 (174)
T 3iht_A 30 LEHAIAQTAG--LSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDST-PPEAQLILGDIRETLPATLERFGAT 106 (174)
T ss_dssp HHHHHHHTTT--CCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGC-CCGGGEEESCHHHHHHHHHHHHCSC
T ss_pred HHHHHHHhcC--CCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCC-CchHheecccHHHHHHHHHHhcCCc
Confidence 3444554442 3467999999999999999999999999999952 1111111 13357888888763221 2 3
Q ss_pred EEEecccccCCChhHHHHHHHH----HHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKN----CWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~----~~~~L~pgG~lli~e~~ 306 (370)
+.+...=|-....+.-...... +..+|.|||.++-..+.
T Consensus 107 a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl 149 (174)
T 3iht_A 107 ASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM 149 (174)
T ss_dssp EEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred eEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence 3333332222223332333333 45677889988876655
|
| >3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.11 Score=39.66 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCC------CCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 33 PMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP------TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 33 ~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
.+.+.-.+++-|+..|..+ |.+.-+|++.+. + ++..+.+.|+.|...|+|+....+...|+
T Consensus 8 ~~l~~g~l~~~IL~lL~~~---------p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~ 74 (117)
T 3elk_A 8 ERILHGLITLYILKELVKR---------PMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQ 74 (117)
T ss_dssp CHHHHHHHHHHHHHHHHHS---------CEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCC
T ss_pred HHHHhhHHHHHHHHHHHcC---------CCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCC
Confidence 3455566777788888876 899999998876 7 78999999999999999996432112233
Q ss_pred cccceecchhhh-hhhc
Q 017495 107 VERVYGAAPICK-FLIK 122 (370)
Q Consensus 107 ~~~~y~~~~~~~-~l~~ 122 (370)
....|++|+.++ .|..
T Consensus 75 ~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 75 QLTVYHITDAGKKFLCD 91 (117)
T ss_dssp EEEEEEECHHHHHHHHH
T ss_pred CceEEEECHHHHHHHHH
Confidence 356799999997 4443
|
| >2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D | Back alignment and structure |
|---|
Probab=92.48 E-value=0.087 Score=40.60 Aligned_cols=69 Identities=14% Similarity=0.090 Sum_probs=49.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... ++++.|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.+
T Consensus 39 q~~vL~~l~~~------~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~i~LT~~G~~~ 106 (127)
T 2frh_A 39 EFAVLTYISEN------KEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKK 106 (127)
T ss_dssp HHHHHHHHHHT------CCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHH
T ss_pred HHHHHHHHHhc------cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecC-CCCCCC-eeEEEECHHHHHH
Confidence 44566666542 1137999999999999 9999999999999999999742 223322 2346678777654
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 107 ~ 107 (127)
T 2frh_A 107 I 107 (127)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.067 Score=42.47 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ .....+|+.++.+.
T Consensus 50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~-~~~DrR-~~~l~LT~~G~~~~ 105 (147)
T 4b8x_A 50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRP-NPNDGR-GTLATITDKGREVV 105 (147)
T ss_dssp GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CC-----CEEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEee-cCCcCc-eeEEEECHHHHHHH
Confidence 37999999999999 9999999999999999999752 223221 12366787776554
|
| >2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.21 Score=39.78 Aligned_cols=49 Identities=20% Similarity=0.080 Sum_probs=40.9
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+..+||+.+++ ++..+++.|+.|...|+|.... +..+.+|+.+..+.
T Consensus 54 ~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~--------~~~~~lT~~g~~~~ 102 (155)
T 2h09_A 54 EARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP--------WRGVFLTAEGEKLA 102 (155)
T ss_dssp CCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET--------TTEEEECHHHHHHH
T ss_pred CcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec--------CCceEEChhHHHHH
Confidence 7899999999999 9999999999999999998631 24577887776443
|
| >4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.22 Score=39.62 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=48.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
++.++..|... + ++.+..+||+.+++ ++..+.++++.|+..|+|+..+ ++.|++ .....+|+.++.+
T Consensus 33 q~~vL~~L~~~-----~--~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~-~~~DrR-~~~l~LT~~G~~~ 99 (151)
T 4aik_A 33 HWVTLYNINRL-----P--PEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHT-SANDRR-AKRIKLTEQSSPI 99 (151)
T ss_dssp HHHHHHHHHHS-----C--TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECGGGHHH
T ss_pred HHHHHHHHHHc-----C--CCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeec-CCCCCc-chhhhcCHHHHHH
Confidence 34456666543 2 26788999999999 9999999999999999999742 333322 2346678877655
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 100 ~ 100 (151)
T 4aik_A 100 I 100 (151)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A | Back alignment and structure |
|---|
Probab=92.03 E-value=0.13 Score=42.95 Aligned_cols=52 Identities=10% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++..-.+..|+..|.++ +.|..+||+.+|+ ++..+++.|+.|...|++...
T Consensus 15 k~l~d~~~~~IL~~L~~~---------~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 15 KVMLEDTRRKILKLLRNK---------EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHSHHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHcC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 344445667788888754 8999999999999 999999999999999999863
|
| >3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=92.03 E-value=0.17 Score=41.90 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=53.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+..++.++..|... |++++|..+||+.+++ ++..+.++++.|+..|+|+... .+.|++ ...+.+|+.+
T Consensus 40 t~~q~~vL~~L~~~------~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G 107 (189)
T 3nqo_A 40 TSRQYMTILSILHL------PEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIP-SPHDKR-AINVKVTDLG 107 (189)
T ss_dssp CHHHHHHHHHHHHS------CGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCSS-CEEEEECHHH
T ss_pred CHHHHHHHHHHHhc------cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecc-CCCCCC-eeEEEECHHH
Confidence 44566777777742 1138999999999999 9999999999999999999742 223322 2447788888
Q ss_pred hhhhc
Q 017495 118 KFLIK 122 (370)
Q Consensus 118 ~~l~~ 122 (370)
+.+..
T Consensus 108 ~~~~~ 112 (189)
T 3nqo_A 108 KKVMV 112 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 75443
|
| >3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.079 Score=41.56 Aligned_cols=67 Identities=10% Similarity=0.160 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++ |..+||+.+++ ++..+.+.++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 38 ~~~~iL~~l~~~--------~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~-~~~D~R-~~~~~LT~~G~~ 102 (144)
T 3f3x_A 38 LDFSILKATSEE--------PR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIR-DSKDRR-IVIVEITPKGRQ 102 (144)
T ss_dssp HHHHHHHHHHHS--------CE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc-CCCCCc-eEEEEECHHHHH
Confidence 456778888776 25 99999999999 9999999999999999999742 112111 124778888775
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 103 ~~ 104 (144)
T 3f3x_A 103 VL 104 (144)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.097 Score=40.23 Aligned_cols=48 Identities=19% Similarity=0.240 Sum_probs=40.0
Q ss_pred HhcChHHHHhhcccccCCCCCC-CCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGEL-LSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~-~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|... + +| +|+.|||+.+++ +...+.|.|+.|...|+|...
T Consensus 27 ~e~~il~~L~~~-----~--~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 27 ADLNVMKSFLNE-----P--DRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHHHS-----T--TCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHC-----C--CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence 355577777654 1 35 899999999999 999999999999999999864
|
| >2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=91.80 E-value=0.13 Score=40.63 Aligned_cols=45 Identities=20% Similarity=0.389 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... ++.|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 7 d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 51 (144)
T 2cfx_A 7 DLNIIEELKKD--------SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (144)
T ss_dssp HHHHHHHHHHC--------SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 44577888765 48999999999999 99999999999999999984
|
| >2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.1 Score=41.41 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=40.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.+..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 4 ~~~~il~~L~~~--------~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 49 (150)
T 2pn6_A 4 IDLRILKILQYN--------AKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKG 49 (150)
T ss_dssp HHHHHHHHHTTC--------TTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEE
Confidence 355678888765 38999999999999 99999999999999999985
|
| >2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A | Back alignment and structure |
|---|
Probab=91.60 E-value=0.14 Score=40.76 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=39.5
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... ++.|..+||+.+|+ ++..+.+.|+.|...|++..
T Consensus 9 ~~~iL~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 9 DRILVRELAAD--------GRATLSELATRAGL----SVSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 45677788765 48999999999999 99999999999999999974
|
| >1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41 | Back alignment and structure |
|---|
Probab=91.52 E-value=0.11 Score=38.86 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=38.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
++.|+..|... +.++|..+||+.+|+ +...+++.|..|...|+|...
T Consensus 20 ~l~Il~~l~~~-------g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 20 VIDVLRILLDK-------GTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHHHH-------CSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHc-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 34566666432 137899999999999 999999999999999999863
|
| >2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A | Back alignment and structure |
|---|
Probab=91.33 E-value=0.15 Score=41.15 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... +++|..|||+.+|+ ++..+++.|+.|...|++..
T Consensus 12 ~~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 56 (162)
T 2p5v_A 12 DIKILQVLQEN--------GRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQ 56 (162)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEee
Confidence 44677888765 48999999999999 99999999999999999984
|
| >1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=91.11 E-value=0.14 Score=40.57 Aligned_cols=74 Identities=9% Similarity=0.127 Sum_probs=52.6
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQ 106 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~ 106 (370)
++.--.++-|+..|..+ |.+..+|++.+ ++ ++..+.+.|+-|+..|+|+....+...|+
T Consensus 37 ~~~g~~~~~IL~~L~~~---------~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~ 103 (145)
T 1xma_A 37 VIRGYVDTIILSLLIEG---------DSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGK 103 (145)
T ss_dssp SGGGTHHHHHHHHHHHC---------CEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--C
T ss_pred HhcCcHHHHHHHHHHhC---------CCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCC
Confidence 34444566677777765 78988988887 57 99999999999999999986421101233
Q ss_pred cccceecchhhhhhh
Q 017495 107 VERVYGAAPICKFLI 121 (370)
Q Consensus 107 ~~~~y~~~~~~~~l~ 121 (370)
....|.+|+.++.+.
T Consensus 104 ~rk~Y~LT~~G~~~l 118 (145)
T 1xma_A 104 RRTYYRITPEGIKYY 118 (145)
T ss_dssp EEEEEEECHHHHHHH
T ss_pred CeEEEEECHHHHHHH
Confidence 345699999887444
|
| >2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.18 Score=40.02 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=40.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+.+|+ ++..+++.++.|...|++..
T Consensus 10 ~d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 55 (151)
T 2dbb_A 10 VDMQLVKILSEN--------SRLTYRELADILNT----TRQRIARRIDKLKKLGIIRK 55 (151)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 345677888765 48999999999999 99999999999999999984
|
| >2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.17 Score=42.67 Aligned_cols=68 Identities=15% Similarity=-0.079 Sum_probs=49.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... +++|..+||+.+++ ++..+.++++.|+..|+|.... ++.|++ ...+.+|+.++.
T Consensus 49 ~q~~iL~~L~~~--------~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~-~~~DrR-~~~l~LT~~G~~ 114 (207)
T 2fxa_A 49 NEHHILWIAYQL--------NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTE 114 (207)
T ss_dssp HHHHHHHHHHHH--------TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHH
T ss_pred HHHHHHHHHHHC--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec-CCCCCc-eEEEEECHHHHH
Confidence 345567777665 37999999999999 9999999999999999999742 222221 234678888765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 115 ~~ 116 (207)
T 2fxa_A 115 VF 116 (207)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.19 Score=42.68 Aligned_cols=50 Identities=16% Similarity=0.185 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++++..+||+.+++ ++..+.++|+.|...|+++..+ ...+.+|+.++.+.
T Consensus 19 ~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~i~LT~~G~~~~ 68 (214)
T 3hrs_A 19 NKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK--------KAGYLLTDLGLKLV 68 (214)
T ss_dssp SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET--------TTEEEECHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec--------CCCeEECHHHHHHH
Confidence 48999999999999 9999999999999999999631 35688898887554
|
| >1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A | Back alignment and structure |
|---|
Probab=90.55 E-value=0.37 Score=34.97 Aligned_cols=61 Identities=10% Similarity=0.180 Sum_probs=48.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHH-HCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAA-RLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~-~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
++.|+-.|... ++.|+.+||+ ..++ +...+.|-++.|...|+|+.+ + ++ ..+|+.++.
T Consensus 18 QfsiL~~L~~~--------~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~---~-----~D-l~LT~~G~~ 76 (95)
T 1bja_A 18 TATILITIAKK--------DFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS---G-----DG-LIITGEAQD 76 (95)
T ss_dssp HHHHHHHHHHS--------TTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE---T-----TE-EEECHHHHH
T ss_pred HHHHHHHHHHC--------CCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC---C-----CC-eeeCHhHHH
Confidence 34456667665 3899999999 9999 999999999999999999832 1 34 888988875
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 77 ~l~ 79 (95)
T 1bja_A 77 IIS 79 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.54 E-value=0.16 Score=40.44 Aligned_cols=45 Identities=7% Similarity=0.170 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... ++.|..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 10 d~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 54 (152)
T 2cg4_A 10 DRGILEALMGN--------ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 54 (152)
T ss_dssp HHHHHHHHHHC--------TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcce
Confidence 44577888765 48999999999999 99999999999999999984
|
| >3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.25 Score=36.93 Aligned_cols=70 Identities=17% Similarity=0.114 Sum_probs=51.0
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHH----CCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAAR----LPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~----~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
-.+++-|+..|..+ |.+--+|++. +++ ++..+.+.|+.|...|+|+....+ .+|+....|++
T Consensus 8 g~l~~~IL~~L~~~---------~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~L 73 (108)
T 3l7w_A 8 LLIEYLILAIVSKH---------DSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHL 73 (108)
T ss_dssp HHHHHHHHHHHHHS---------CEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEE
T ss_pred HHHHHHHHHHHHcC---------CCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEE
Confidence 34556667777776 7787787777 578 999999999999999999974211 13433456999
Q ss_pred chhhhhhh
Q 017495 114 APICKFLI 121 (370)
Q Consensus 114 ~~~~~~l~ 121 (370)
|+.++...
T Consensus 74 T~~G~~~l 81 (108)
T 3l7w_A 74 TDSGEKHL 81 (108)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887444
|
| >4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=90.43 E-value=0.18 Score=38.24 Aligned_cols=69 Identities=13% Similarity=0.136 Sum_probs=50.7
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC------CCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP------TKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~------~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+++-|+..|..+ |.+--+|++.+. + ++..+.+.|+-|...|+|+....+.+.|+....|++
T Consensus 10 l~~~IL~~L~~~---------~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~L 76 (115)
T 4esb_A 10 LEGCILYIISQE---------EVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHI 76 (115)
T ss_dssp HHHHHHHHHHHS---------CEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEE
T ss_pred HHHHHHHHHHcC---------CCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEE
Confidence 344566677765 889999998874 7 899999999999999999864211122444556999
Q ss_pred chhhhhhh
Q 017495 114 APICKFLI 121 (370)
Q Consensus 114 ~~~~~~l~ 121 (370)
|+.++...
T Consensus 77 T~~G~~~l 84 (115)
T 4esb_A 77 TDKGLEQL 84 (115)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 99887443
|
| >2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=90.31 E-value=0.15 Score=40.64 Aligned_cols=45 Identities=11% Similarity=0.131 Sum_probs=39.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|++.|... ++.|..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 9 ~~~il~~L~~~--------~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 9 DKKIIKILQND--------GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEE
Confidence 45677888765 38999999999999 99999999999999999984
|
| >3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.27 E-value=0.18 Score=40.75 Aligned_cols=46 Identities=11% Similarity=0.227 Sum_probs=40.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|... +++|..+||+++|+ ++..+++-++.|...|++..
T Consensus 4 ~d~~il~~L~~~--------~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~ 49 (162)
T 3i4p_A 4 LDRKILRILQED--------STLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRR 49 (162)
T ss_dssp HHHHHHHHHTTC--------SCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 355678888765 48999999999999 99999999999999999984
|
| >1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=90.21 E-value=0.2 Score=39.64 Aligned_cols=43 Identities=33% Similarity=0.356 Sum_probs=36.5
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchh
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPI 116 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~ 116 (370)
|.++||+.+++ ++..++++|..|...|+|... .| .+.|.+...
T Consensus 25 s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~-----rG--~GGy~Lar~ 67 (145)
T 1xd7_A 25 SSEIIADSVNT----NPVVVRRMISLLKKADILTSR-----AG--VPGASLKKD 67 (145)
T ss_dssp CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC-----SS--SSSCEESSC
T ss_pred CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEee-----cC--CCCceecCC
Confidence 99999999999 999999999999999999863 23 356777654
|
| >2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.22 Score=40.63 Aligned_cols=46 Identities=11% Similarity=0.246 Sum_probs=40.1
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... ++.|..+||+++|+ ++..+.+.|+.|...|++..
T Consensus 18 ~d~~IL~~L~~~--------~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~ 63 (171)
T 2ia0_A 18 LDRNILRLLKKD--------ARLTISELSEQLKK----PESTIHFRIKKLQERGVIER 63 (171)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 344678888765 38999999999999 99999999999999999974
|
| >2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50 | Back alignment and structure |
|---|
Probab=90.12 E-value=0.19 Score=37.03 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|..+||+.+|+ ++..+.+.|+.|...|++...
T Consensus 36 ~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~ 69 (109)
T 2d1h_A 36 PITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence 7999999999999 999999999999999999964
|
| >2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.04 E-value=0.29 Score=38.27 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=41.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..|.++||+++++ ++.-+.++|..|...|+|....+...+|+....|.++|.-.
T Consensus 51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~pL~e 104 (135)
T 2v79_A 51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQPLWG 104 (135)
T ss_dssp SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHHHHH
Confidence 5799999999999 99999999999999999997322222333345676766543
|
| >4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.2 Score=39.65 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++++.|+..|+|+.. .+.|++ .....+|+.++.+.
T Consensus 51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~--~~~DrR-~~~v~LT~~G~~~~ 105 (148)
T 4fx0_A 51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVM--AGADAR-CKRIELTAKGRAAL 105 (148)
T ss_dssp ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC--------------CCBCHHHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEee--CCCCCC-eeEEEECHHHHHHH
Confidence 47999999999999 999999999999999999642 223322 12356677666444
|
| >2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=89.96 E-value=0.18 Score=41.40 Aligned_cols=71 Identities=8% Similarity=0.058 Sum_probs=48.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... ++.+++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ ...+.+|+.++.
T Consensus 70 ~~~~iL~~L~~~-----~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~-~~~DrR-~~~~~LT~~G~~ 138 (181)
T 2fbk_A 70 AGWDLLLTLYRS-----APPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRA 138 (181)
T ss_dssp HHHHHHHHHHHH-----CCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHH
T ss_pred HHHHHHHHHHHc-----CCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecC-CCCCCC-eeEEEECHHHHH
Confidence 355677888765 21013999999999999 9999999999999999999642 112211 234677777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 139 ~~ 140 (181)
T 2fbk_A 139 LV 140 (181)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2 | Back alignment and structure |
|---|
Probab=89.86 E-value=0.17 Score=39.64 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=38.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|..+ ++.+..+||+.+|+ ++..+++.|+.|...|++..
T Consensus 6 ~~~il~~L~~~--------~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~ 50 (141)
T 1i1g_A 6 DKIILEILEKD--------ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 50 (141)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEec
Confidence 44567777654 37999999999999 99999999999999999974
|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.81 E-value=0.32 Score=33.42 Aligned_cols=48 Identities=10% Similarity=0.207 Sum_probs=41.4
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+-.|++.|.+. +.|++..+||+.+|+ +..-+.+.|..|-..|.|...
T Consensus 20 ~eekVLe~Lkea-------G~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 20 LEQRILQVLTEA-------GSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHHHH-------TSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-------CCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCC
Confidence 345678888776 359999999999999 999999999999999999863
|
| >1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61 | Back alignment and structure |
|---|
Probab=89.59 E-value=0.36 Score=39.65 Aligned_cols=65 Identities=12% Similarity=0.235 Sum_probs=46.9
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCcccccee
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYG 112 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~ 112 (370)
++-|+..|..+ |.+.-+|++.+ ++ ++..+.+.|+-|...|+|+....+...|+....|+
T Consensus 4 ~~~iL~lL~~~---------~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~ 70 (179)
T 1yg2_A 4 PHVILTVLSTR---------DATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYS 70 (179)
T ss_dssp HHHHHHHHHHC---------CBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEE
T ss_pred HHHHHHHHhcC---------CCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEE
Confidence 45567777766 89999999988 57 89999999999999999996421111122245699
Q ss_pred cchhhh
Q 017495 113 AAPICK 118 (370)
Q Consensus 113 ~~~~~~ 118 (370)
+|+.++
T Consensus 71 lT~~G~ 76 (179)
T 1yg2_A 71 ITQAGR 76 (179)
T ss_dssp ECHHHH
T ss_pred eChHHH
Confidence 999986
|
| >2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=89.18 E-value=0.3 Score=37.84 Aligned_cols=50 Identities=14% Similarity=0.167 Sum_probs=42.5
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 10 T~qR~~Il~~l~~~-------~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 10 TRQRAAISTLLETL-------DDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHHHHHC-------CSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEE
Confidence 55677788888754 2489999999998 67 899999999999999999974
|
| >1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A | Back alignment and structure |
|---|
Probab=88.94 E-value=0.14 Score=38.97 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=37.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCC----CCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLP----TKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..|+..|... ++.|..+||+.++ + ++..+.++|+.|+..|+|...
T Consensus 12 ~~~vL~~l~~~--------~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 12 EWEVMNIIWMK--------KYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHH--------SSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhC--------CCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEE
Confidence 34455666554 3899999999998 6 799999999999999999964
|
| >1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B | Back alignment and structure |
|---|
Probab=88.78 E-value=0.2 Score=35.18 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=38.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCC----CCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLP----TKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~----~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|++.|... ++.|+.||++.++ + ++..+.++|+.|+..|+|...
T Consensus 10 ~e~~vL~~L~~~--------~~~t~~ei~~~l~~~~~~----s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKH--------SSINTNEVIKELSKTSTW----SPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTS--------SSEEHHHHHHHHHHHSCC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHHhhcCCc----cHHHHHHHHHHHHHCCCeEEE
Confidence 345566777654 3899999999986 6 788999999999999999964
|
| >1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36 | Back alignment and structure |
|---|
Probab=87.99 E-value=0.97 Score=35.14 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=32.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|+|..+||+.+++ ++..+.++|+.|...|+|+..
T Consensus 41 ~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 41 PLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence 7999999999999 999999999999999999964
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=1.2 Score=38.78 Aligned_cols=94 Identities=23% Similarity=0.279 Sum_probs=64.9
Q ss_pred CCeEEEEcCcccHHHHHHHhh-------CCCCeEEEee----hhhH------------------------HH-------h
Q 017495 208 LKVLVDVGGGIGVTLGMITSR-------YPCIKGISFD----LPHV------------------------LA-------N 245 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~-------~p~~~~~~~D----~p~~------------------------~~-------~ 245 (370)
+..|+|+|+-.|..+..++.. .++-+++++| +|+. +. .
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 579999999999988886542 3678899999 2321 00 0
Q ss_pred CCC----CCCCeEEeccCCCC-------CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 246 APS----FPGVEHVGGDMFEN-------VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 246 a~~----~~rv~~~~~D~~~~-------~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+. .++|+++.|++.+. .|.. |++++-.=++ +.....|..+...|+|||.+++-+.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~Y----~~t~~~le~~~p~l~~GGvIv~DD~ 218 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDLY----EPTKAVLEAIRPYLTKGSIVAFDEL 218 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCCH----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCccc----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence 011 16799999999762 2332 7777754322 3456789999999999999998553
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=2.3 Score=38.13 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred CCeEEEEcCcc-c-HHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCCCEEEecccccCCChhHH
Q 017495 208 LKVLVDVGGGI-G-VTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHC 283 (370)
Q Consensus 208 ~~~vLDvG~G~-G-~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~ 283 (370)
..+|.=||+|. | .++..|.+......++++|. ++.++.+.+..-+.....|..+ .....|+|+++ .+....
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVila-----vp~~~~ 107 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTF 107 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEEC-----SCGGGH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEe-----CCHHHH
Confidence 36899999883 3 44445555433338899997 6665554433222222233332 23345999875 344556
Q ss_pred HHHHHHHHHhCCCCcEEEE
Q 017495 284 LKLLKNCWEALPENGKVII 302 (370)
Q Consensus 284 ~~iL~~~~~~L~pgG~lli 302 (370)
..+++.+...++||..++-
T Consensus 108 ~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 108 REIAKKLSYILSEDATVTD 126 (314)
T ss_dssp HHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHhhccCCCcEEEE
Confidence 7889999999999875543
|
| >1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=87.26 E-value=0.35 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
...|+.+||+++|+ +..-+.|.|-.|...|+|...
T Consensus 28 ~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecC
Confidence 35999999999999 989999999999999999863
|
| >2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=87.08 E-value=0.36 Score=35.46 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=39.6
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.+..|+..|... +++|+.||++.++.+.+.++.-+.++|+-|+..|+|.+.
T Consensus 36 ~e~~VL~~L~~~--------~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 36 AELIVMRVIWSL--------GEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp SCSHHHHHHHHH--------SCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHHHhC--------CCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 355677777665 389999999999751111578899999999999999964
|
| >1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 | Back alignment and structure |
|---|
Probab=86.41 E-value=0.64 Score=40.40 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=50.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... + ++++|..+||+.+++ ++..+.++++-|+..|+|++.+ +++|.+ .-...+|+.++.
T Consensus 159 ~q~~vL~~L~~~-----~-~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~-~~~DrR-~~~i~LT~~G~~ 226 (250)
T 1p4x_A 159 VEFTILAIITSQ-----N-KNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQD 226 (250)
T ss_dssp HHHHHHHHHHTT-----T-TCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHH
T ss_pred HHHHHHHHHHhC-----C-CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeC-CCCCCC-eEEEEECHHHHH
Confidence 445567777654 1 125999999999999 9999999999999999999752 223321 123556777765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 227 ~~ 228 (250)
T 1p4x_A 227 HA 228 (250)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A* | Back alignment and structure |
|---|
Probab=86.40 E-value=0.59 Score=36.86 Aligned_cols=50 Identities=8% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +.+.|++||.+.+ ++ +..-+.|.|+.|+..|+|.+.
T Consensus 21 T~qR~~Il~~L~~~-------~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 21 TPQRHAILEYLVNS-------MAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp CHHHHHHHHHHHHC-------SSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEE
Confidence 34566688888764 2489999999998 66 889999999999999999974
|
| >3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.37 E-value=0.59 Score=38.92 Aligned_cols=34 Identities=21% Similarity=0.025 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|.|..|||+.+|+ +...+.+.|+.|...|++..
T Consensus 23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEe
Confidence 37899999999999 87799999999999999985
|
| >3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.19 E-value=1.3 Score=28.37 Aligned_cols=43 Identities=23% Similarity=0.168 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
+++|+.|+|...+. +-...+.-|..|-+.|-+.+. ..+|++.|
T Consensus 17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR---------sSRYrlkp 59 (68)
T 3i71_A 17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR---------SSRYRLKP 59 (68)
T ss_dssp TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------CCEEEECC
T ss_pred ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh---------ccccccCc
Confidence 46999999999999 999999999999999999963 46787765
|
| >2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85 | Back alignment and structure |
|---|
Probab=85.61 E-value=0.66 Score=33.43 Aligned_cols=47 Identities=17% Similarity=0.207 Sum_probs=38.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+.|+..|... | +.+++..+||+++++ +..-+.++|+.|...|+|...
T Consensus 23 ~~Vl~~I~~~-----g-~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 23 KLVYQIIEDA-----G-NKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HHHHHHHHHH-----C-TTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHc-----C-CCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 4466666652 1 137999999999999 999999999999999999953
|
| >1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6 | Back alignment and structure |
|---|
Probab=85.34 E-value=0.37 Score=35.42 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=31.6
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
..+ +..+||+.+++ +...+++.|+.|...|+|..
T Consensus 33 ~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~ 67 (102)
T 1v4r_A 33 DTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSS 67 (102)
T ss_dssp SBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEE
T ss_pred CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 356 99999999999 99999999999999999985
|
| >1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A* | Back alignment and structure |
|---|
Probab=85.19 E-value=0.71 Score=33.90 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=35.7
Q ss_pred HHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhc
Q 017495 37 KSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLAS 91 (370)
Q Consensus 37 ~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 91 (370)
..+.++||+..|..+ ++|-.|||+.+|+ +...+.|.-++|-.
T Consensus 43 ~l~~R~~l~~~L~~g---------e~TQREIA~~lGi----S~stISRi~r~L~~ 84 (101)
T 1jhg_A 43 ALGTRVRIIEELLRG---------EMSQRELKNELGA----GIATITRGSNSLKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHC---------CSCHHHHHHHHCC----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC---------CcCHHHHHHHHCC----ChhhhhHHHHHHHH
Confidence 345779999999886 7999999999999 99999998777643
|
| >1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A | Back alignment and structure |
|---|
Probab=84.96 E-value=0.65 Score=39.71 Aligned_cols=47 Identities=19% Similarity=0.186 Sum_probs=39.3
Q ss_pred CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 63 SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 63 t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+..+||+.+++ ++..+.++|+.|...|+++..+ +..+.+|+.++.+.
T Consensus 26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~--------~~~v~LT~~G~~~~ 72 (230)
T 1fx7_A 26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG--------DRHLELTEKGRALA 72 (230)
T ss_dssp CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT--------TSCEEECHHHHHHH
T ss_pred cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC--------CccEEECHHHHHHH
Confidence 44999999999 9999999999999999999631 35688888876544
|
| >2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.76 E-value=0.82 Score=29.36 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=38.4
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.|++.+... +|-+.++.++++.|+ +.+-+-.+|+.|++-|++..
T Consensus 14 ~lL~yIr~s-------GGildI~~~a~kygV----~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 14 ELLDYIVNN-------GGFLDIEHFSKVYGV----EKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHT-------TSEEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHc-------CCEEeHHHHHHHhCC----CHHHHHHHHHHHHHCCCeec
Confidence 467777765 468999999999999 99999999999999999974
|
| >2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=84.35 E-value=0.94 Score=35.94 Aligned_cols=50 Identities=20% Similarity=0.283 Sum_probs=42.5
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... +.+.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 26 T~qR~~IL~~l~~~-------~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 26 SKQREEVVSVLYRS-------GTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHHHHHHHC-------SSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEE
Confidence 56677789998764 2489999999998 67 889999999999999999974
|
| >2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP} | Back alignment and structure |
|---|
Probab=83.96 E-value=1.6 Score=32.90 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=46.0
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHC-------CCCCCCCcchHHHHHHHHhcCCceeccccCC-CCCccccceecch
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARL-------PTKNPDAPFLLDRMLSLLASYDILRCSLQNG-DNGQVERVYGAAP 115 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~-------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~-~~g~~~~~y~~~~ 115 (370)
|+..|..+ |.+--+|.+.+ ++ ++..+...|+-|...|+|+....+. ..|+....|++|+
T Consensus 27 IL~lL~~~---------~~~Gyei~~~l~~~~~~~~i----s~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~ 93 (115)
T 2dql_A 27 ILYVLLQG---------ESYGTELIQQLETEHPTYRL----SDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSP 93 (115)
T ss_dssp HHHHHTTS---------CBCHHHHHHHHHHHCTTEEC----CHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECG
T ss_pred HHHHHHhC---------CCCHHHHHHHHHHHcCCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECH
Confidence 55566665 77777777665 47 8999999999999999998643221 1233356699999
Q ss_pred hhhhhh
Q 017495 116 ICKFLI 121 (370)
Q Consensus 116 ~~~~l~ 121 (370)
.++...
T Consensus 94 ~G~~~l 99 (115)
T 2dql_A 94 EWQHQA 99 (115)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 887433
|
| >2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} | Back alignment and structure |
|---|
Probab=83.49 E-value=0.71 Score=36.08 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=43.6
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
.+++.|..| ++|+.+||+++|+ +.....-.|..|+..|++.+.+ .|| -..|++.
T Consensus 15 ~ILE~Lk~G---------~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk----~GK-~ayw~L~ 68 (165)
T 2vxz_A 15 DILALLADG---------CKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVA----FGN-VALVCLS 68 (165)
T ss_dssp HHHHHHTTC---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEE----ETT-EEEEESC
T ss_pred HHHHHHHhC---------CccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEE----Ecc-EEEEEec
Confidence 467778854 8999999999999 9999999999999999999753 343 2445554
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=82.92 E-value=1.7 Score=40.62 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCCCeEEEEcCcccHHHHHHH-hhCCC-CeEEEeeh-hhHHHhC
Q 017495 206 DGLKVLVDVGGGIGVTLGMIT-SRYPC-IKGISFDL-PHVLANA 246 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~-~~~p~-~~~~~~D~-p~~~~~a 246 (370)
++...|+|||++.|.++..++ +..+. .+++.++. |...+..
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L 268 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTL 268 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence 567899999999999999988 56665 79999997 7665543
|
| >1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42 | Back alignment and structure |
|---|
Probab=82.64 E-value=0.82 Score=35.56 Aligned_cols=50 Identities=12% Similarity=0.207 Sum_probs=41.0
Q ss_pred HHHhcChHHHHhhcccccCCCC-CCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHG-ELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~-~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+-.+.-|++.|... + .+.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 17 T~qR~~Il~~L~~~-------~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 17 TLPRVKILQMLDSA-------EQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp CHHHHHHHHHHHCC--------CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 34566688888753 2 389999999998 66 889999999999999999974
|
| >3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2 | Back alignment and structure |
|---|
Probab=82.11 E-value=1.2 Score=38.04 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=43.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+.|..++|+.+++ ++..+++.++.|...|+|.+.. + + ....+.+|+.++.+..
T Consensus 27 ~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~-~---~-R~~~v~LT~~G~~l~~ 79 (230)
T 3cta_A 27 YLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTV-T---K-RGQILNITEKGLDVLY 79 (230)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-E---T-TEEEEEECHHHHHHHH
T ss_pred CcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEE-c---C-CeEEEEECHHHHHHHH
Confidence 6899999999999 9999999999999999999641 0 0 0356888888875553
|
| >1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1 | Back alignment and structure |
|---|
Probab=82.08 E-value=1.2 Score=36.80 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=40.4
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc-eec
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI-LRC 97 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~ 97 (370)
.--...|++.|... +.++|+.+||+.+++ +.+.+++-++.|...|+ +..
T Consensus 20 ~~R~~~Il~~L~~~-------~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 20 QERLKSIVRILERS-------KEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHC-------SSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHc-------CCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence 34456688888753 136999999999999 99999999999999999 763
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=81.89 E-value=0.75 Score=42.56 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecccc-CCCCCcccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQ-NGDNGQVER 109 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~-~~~~g~~~~ 109 (370)
..+++++...+..|++.|. . +++|..|||+.+++ ++..+.++++.|.+.|++.+... +..-|+...
T Consensus 12 ~~~~~~~~~~~~~il~~l~-~--------~~~sr~~la~~~gl----s~~tv~~~v~~L~~~gli~~~~~~~~~~GR~~~ 78 (380)
T 2hoe_A 12 HMPKSVRAENISRILKRIM-K--------SPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEKDSPKGVGRPTK 78 (380)
T ss_dssp ----------CCCSHHHHH-H--------SCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEECCC----CCCE
T ss_pred cCchhHHHHHHHHHHHHHH-c--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeecCCCCCCCCCce
Confidence 4456777788888999999 6 38999999999999 99999999999999999987421 111133334
Q ss_pred ceecchhhh
Q 017495 110 VYGAAPICK 118 (370)
Q Consensus 110 ~y~~~~~~~ 118 (370)
.|..++...
T Consensus 79 ~l~~~~~~~ 87 (380)
T 2hoe_A 79 SLKISPNCA 87 (380)
T ss_dssp EEEECGGGC
T ss_pred EEEEccCCC
Confidence 466666544
|
| >3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=81.70 E-value=0.94 Score=35.40 Aligned_cols=50 Identities=18% Similarity=0.107 Sum_probs=41.6
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-----CCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARL-----PTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-----~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+.-|++.|... +++.|++||.+.+ ++ +..-+.|.|+.|+..|++.+.
T Consensus 13 T~qR~~Il~~L~~~-------~~h~sa~eI~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 13 TRQRAAVSAALQEV-------EEFRSAQELHDMLKHKGDAV----GLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHHHHHTTC-------SSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHTTSSEEE
T ss_pred CHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHhCCCC----CHHHHHHHHHHHHHCCCEEEE
Confidence 45677788988764 2489999999887 45 888999999999999999974
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=81.56 E-value=6.1 Score=36.50 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=27.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-------CCCeEEEeeh
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-------PCIKGISFDL 239 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 239 (370)
.+.+.+|+|+|+|.|.++..+++.. ..++++.++.
T Consensus 78 ~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~ 119 (387)
T 1zkd_A 78 EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 119 (387)
T ss_dssp CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEec
Confidence 3455789999999999998887652 3458888987
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=81.55 E-value=2.4 Score=36.85 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=37.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP 247 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~ 247 (370)
.+..++..+. .+...|||..||+|..+.+..+. +.+++++|+ +..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 4555555543 45679999999999999988774 578999998 77766554
|
| >3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.29 E-value=1.3 Score=33.16 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=32.0
Q ss_pred CCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
..+ |..+||+.+|+ +..-+++-|+.|...|+|+..
T Consensus 31 ~~lPs~~~La~~~~v----Sr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQI----NPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence 456 89999999999 999999999999999999863
|
| >1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 | Back alignment and structure |
|---|
Probab=80.33 E-value=1.2 Score=42.59 Aligned_cols=69 Identities=17% Similarity=0.197 Sum_probs=48.1
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+..|+..|... +++++|..+||+++++ ++..+.|+++-|+..|+|++.+ +.+|.+ .-...+|+.++.+
T Consensus 406 q~~vl~~l~~~------~~~~~~~~~l~~~~~~----~~~~~t~~~~~le~~g~v~r~~-~~~D~R-~~~i~lT~~g~~~ 473 (487)
T 1hsj_A 406 EIYILNHILRS------ESNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR-SLQDER-TVIVYVTDTQKAN 473 (487)
T ss_dssp HHHHHHHHHTC------SCSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE-CCSSSS-CCEEECCSSHHHH
T ss_pred HHHHHHHHHhC------CCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecC-CCCCCC-eEEEEECHHHHHH
Confidence 44566777543 1247999999999999 9999999999999999999742 223211 1234556666544
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 474 ~ 474 (487)
T 1hsj_A 474 I 474 (487)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66 | Back alignment and structure |
|---|
Probab=80.02 E-value=0.89 Score=33.48 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=31.2
Q ss_pred CC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+ +..+||+.+++ +..-+++-|+.|...|+|..
T Consensus 42 ~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~ 75 (102)
T 2b0l_A 42 GLLVASKIADRVGI----TRSVIVNALRKLESAGVIES 75 (102)
T ss_dssp EEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEE
Confidence 56 99999999999 99999999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 370 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 7e-87 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 9e-84 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 3e-78 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 4e-44 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 3e-39 | |
| d1kyza1 | 107 | a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic | 1e-36 | |
| d1fp1d1 | 110 | a.4.5.29 (D:19-128) Chalcone O-methyltransferase { | 9e-36 | |
| d1fp2a1 | 101 | a.4.5.29 (A:8-108) Isoflavone O-methyltransferase | 2e-14 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-06 | |
| d1tw3a1 | 85 | a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer | 3e-06 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 6e-06 | |
| d1qzza1 | 92 | a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R | 5e-05 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 0.003 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 260 bits (666), Expect = 7e-87
Identities = 113/244 (46%), Positives = 161/244 (65%), Gaps = 3/244 (1%)
Query: 129 GSVAPLFLLHHDKVFMESWYHLKDVILEGGI-PFRRAYGMTQFEYLGTDPRFNGVFNEAM 187
G +A ++ W + K+ +++ I F+ +G+T++E++G D + N +FN++M
Sbjct: 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSM 61
Query: 188 SNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAP 247
+ A M ++L++Y GF+G+ LVDVGGG G L +I S+YP IKGI+FDLP V+ NAP
Sbjct: 62 VDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAP 121
Query: 248 SFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307
G+EHVGGDMF +VP+GDA+ LK + H W+DE C++ L NC +AL NGKVIIVE IL
Sbjct: 122 PLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL 181
Query: 308 PLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNS-WVM 366
P P S +V D M T GGRER++K+YE L+K SGFS ++ C A+NS VM
Sbjct: 182 PEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 240
Query: 367 EFHK 370
EF+K
Sbjct: 241 EFYK 244
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 252 bits (645), Expect = 9e-84
Identities = 146/242 (60%), Positives = 191/242 (78%)
Query: 127 DDGSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEA 186
D S++ L L++ DKV MESWYHLKD +L+GGIPF +AYGMT FEY GTDPRFN VFN+
Sbjct: 1 DGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKG 60
Query: 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA 246
MS+HS + M KIL+ Y GF+GLK LVDVGGG G + I S+YP IKGI+FDLPHV+ +A
Sbjct: 61 MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120
Query: 247 PSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306
PS+PGVEHVGGDMF ++P+ DA+F+KW+ H W+DEHCLK LKNC+EALP+NGKVI+ E I
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180
Query: 307 LPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVM 366
LP+ P++ ++ V D+ MLA GG+ER++KE+E LAK +GF G ++ C A+N+++M
Sbjct: 181 LPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIM 240
Query: 367 EF 368
EF
Sbjct: 241 EF 242
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 238 bits (609), Expect = 3e-78
Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 6/244 (2%)
Query: 130 SVAPLFLLHHDKVFMESWYHLKDVILEGGI-PFRRAYGMTQFEYLGTDPRFNGVFNEAMS 188
+AP+ D S++ LK I E + F G +++L +P +N FN+AM+
Sbjct: 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61
Query: 189 NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248
+ S L+ + D FDGL+ +VDVGGG G T +I +P +K I FD P V+ N
Sbjct: 62 SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121
Query: 249 FPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALP---ENGKVIIVES 305
+ +VGGDMF ++P DA+ LK++LH WTD+ CL++LK C EA+ + GKV I++
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181
Query: 306 ILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWV 365
++ + + I D+ M G+ER+++E++ L +GF +I +
Sbjct: 182 VIDKKKDENQVTQIKLLMDVNMA--CLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239
Query: 366 MEFH 369
+E +
Sbjct: 240 IEIY 243
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 150 bits (380), Expect = 4e-44
Identities = 55/255 (21%), Positives = 94/255 (36%), Gaps = 18/255 (7%)
Query: 128 DGSVAPLFLLHHDKVFME-SWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEA 186
L+ + ++ L DV+ G + YG +E L D F+
Sbjct: 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDAL 61
Query: 187 MSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA 246
MS L D + ++ ++DVGGG G L I R P ++G +L A
Sbjct: 62 MSCDEDLAYEAPAD-AYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERA 120
Query: 247 PSFPGVEHVGG--------DMFENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENG 298
+ D + L ++L W+DE L +L+ C AL G
Sbjct: 121 RRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGG 180
Query: 299 KVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI-- 356
++++++ + A DL ML GGR R++ E LA ++G +
Sbjct: 181 RLLVLDRADV--EGDGADRFFSTLLDLRMLTF-MGGRVRTRDEVVDLAGSAGLALASERT 237
Query: 357 ---VCCAYNSWVMEF 368
++ ++EF
Sbjct: 238 SGSTTLPFDFSILEF 252
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 138 bits (347), Expect = 3e-39
Identities = 51/219 (23%), Positives = 91/219 (41%), Gaps = 13/219 (5%)
Query: 146 SWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGF 205
S+ L D I G + YG +E L P F+ ++ + + Y +
Sbjct: 20 SFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DW 78
Query: 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMF----- 260
++ ++DVGGG G I R P + ++ + A S+ E + +
Sbjct: 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGD 138
Query: 261 ---ENVPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASS 317
+ DAI L ++L W D +++L C EAL G+++I E + +
Sbjct: 139 FFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD---DLHENSFN 195
Query: 318 HIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI 356
E DL ML GG R++++++ LA ++G E+
Sbjct: 196 EQFTELDLRMLVF-LGGALRTREKWDGLAASAGLVVEEV 233
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 126 bits (318), Expect = 1e-36
Identities = 55/111 (49%), Positives = 82/111 (73%), Gaps = 5/111 (4%)
Query: 14 VDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT 73
+ EE A++LA+A+VLPM+LKSA+EL++++II+ A G G +S +IA++LPT
Sbjct: 2 ISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKA-----GPGAQISPIEIASQLPT 56
Query: 74 KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQ 124
NPDAP +LDRML LLA Y IL CS++ +G+V+R+YG A + K+L+KN+
Sbjct: 57 TNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 124 bits (312), Expect = 9e-36
Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 6/112 (5%)
Query: 16 QEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLP--T 73
++ A+ L V P VL +AI+LN+ +II+ A G +S S+IA++LP T
Sbjct: 3 EDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA----TPPGAFMSPSEIASKLPAST 58
Query: 74 KNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQD 125
++ D P LDRML LLASY +L + + ++G ERVYG + + K+L+ ++
Sbjct: 59 QHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGKYLVPDES 110
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 66.5 bits (162), Expect = 2e-14
Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 14/101 (13%)
Query: 25 RLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDR 84
+ A + M LK A+E+N+ +II HG+ +S S + + L + + R
Sbjct: 15 KHIYAFIDSMSLKWAVEMNIPNIIQN-------HGKPISLSNLVSILQVPSSKIGN-VRR 66
Query: 85 MLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKNQD 125
++ LA + E Y + L++ D
Sbjct: 67 LMRYLAHNGFFEIITKE------EESYALTVASELLVRGSD 101
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 46.5 bits (109), Expect = 1e-06
Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 23/189 (12%)
Query: 189 NHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS 248
+HS +M K + +VL D+G G G T + G+ V +
Sbjct: 2 HHSLGLMIKTAECRAEH---RVL-DIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSF 57
Query: 249 FPGVEHVGGDMFENV--------PRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKV 300
+ D I ++ H ++D K ++ L ++G+
Sbjct: 58 AQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVR--KAVREVARVLKQDGRF 115
Query: 301 IIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEI---- 356
++V+ P P F L L + RE S E++A+ + + +I
Sbjct: 116 LLVDHYAPEDPVLDE-----FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWN 170
Query: 357 VCCAYNSWV 365
+ Y+SW+
Sbjct: 171 LPIQYDSWI 179
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 42.9 bits (101), Expect = 3e-06
Identities = 19/99 (19%), Positives = 36/99 (36%), Gaps = 22/99 (22%)
Query: 25 RLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDR 84
RL + PMV+++A L ++D I + +AAR T+ P L R
Sbjct: 8 RLGSL-HTPMVVRTAATLRLVDHI---------LAGARTVKALAARTDTR----PEALLR 53
Query: 85 MLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIKN 123
++ L + +L + + + L +
Sbjct: 54 LIRHLVAIGLLEE--------DAPGEFVPTEVGELLADD 84
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 44.6 bits (104), Expect = 6e-06
Identities = 23/183 (12%), Positives = 51/183 (27%), Gaps = 16/183 (8%)
Query: 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFD---LPHVLANAPSFPGVE 253
K++ + +VL DV G G + L A +
Sbjct: 6 KLMQIAALKGNEEVL-DVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQ 64
Query: 254 HVGGDMFENVPRGDAIFLKWMLHGWTDEHC---LKLLKNCWEALPENGKVIIVESILPLV 310
+ H + + L + G++++V++ P
Sbjct: 65 VEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAP-- 122
Query: 311 PENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC----AYNSWVM 366
+ + VF + + R K ++ + + +GF E+ C + W
Sbjct: 123 ---ENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFEDWCD 179
Query: 367 EFH 369
+
Sbjct: 180 RMN 182
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 39.3 bits (92), Expect = 5e-05
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 25 RLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDR 84
+ V PM L+ A L ++D + + + +A R T P L R
Sbjct: 13 KNLGNLVTPMALRVAATLRLVDHL---------LAGADTLAGLADRTDTH----PQALSR 59
Query: 85 MLSLLASYDILR 96
++ L +L
Sbjct: 60 LVRHLTVVGVLE 71
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 36.2 bits (83), Expect = 0.003
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFD-----LPHVLANAPSFPGVEHVGGDMFE 261
K+L +G G T + + + + +L + + GD +
Sbjct: 75 DSKIL-YLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANK 133
Query: 262 NVPRGDAIFLKWMLHGWTD--EHCLKLLKNCWEALPENGKVIIV 303
+ + +++ L+KN L + G +I
Sbjct: 134 PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA 177
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 370 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.82 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.81 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.74 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.69 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.69 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.67 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.66 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.65 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.65 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.63 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.62 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.62 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.59 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.56 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.54 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.54 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.53 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.52 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.49 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.49 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.48 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.43 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.43 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.42 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.4 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.39 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.35 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.31 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.25 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.25 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.24 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.23 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.22 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.22 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.19 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.18 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.17 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.16 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.14 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.03 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.97 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.97 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.87 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.87 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.87 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.8 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.7 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.7 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.69 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.69 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.34 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.32 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.27 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.25 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.19 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.18 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.11 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.09 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.08 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.07 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.07 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.04 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.03 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.02 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.02 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.98 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.97 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.92 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.81 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.78 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.74 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.71 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.7 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.68 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.66 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.65 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.59 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.58 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.56 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 97.54 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.47 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.18 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.05 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 96.99 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.85 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.78 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.7 | |
| d2p4wa1 | 194 | Transcriptional regulatory protein PF1790 {Pyrococ | 96.69 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 96.66 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 96.64 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.6 | |
| d1r1ua_ | 94 | Metal-sensing transcriptional repressor CzrA {Stap | 96.58 | |
| d1ulya_ | 190 | Hypothetical protein PH1932 {Pyrococcus horikoshii | 96.42 | |
| d1u2wa1 | 108 | Cadmium efflux system accessory protein CadC {Stap | 96.41 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 96.18 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 95.98 | |
| d1biaa1 | 63 | Biotin repressor, N-terminal domain {Escherichia c | 95.85 | |
| d2hoea1 | 62 | N-acetylglucosamine kinase {Thermotoga maritima [T | 95.73 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 95.62 | |
| d1z6ra1 | 70 | Mlc protein N-terminal domain {Escherichia coli [T | 95.47 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 95.21 | |
| d2obpa1 | 81 | Putative DNA-binding protein ReutB4095 {Ralstonia | 94.92 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.91 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 94.88 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 94.8 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.75 | |
| d1xd7a_ | 127 | Hypothetical protein ywnA {Bacillus subtilis [TaxI | 94.71 | |
| d1lnwa_ | 141 | MexR repressor {Pseudomonas aeruginosa [TaxId: 287 | 94.69 | |
| d2etha1 | 140 | Putative transcriptional regulator TM0816 {Thermot | 94.45 | |
| d2bv6a1 | 136 | Transcriptional regulator MgrA {Staphylococcus aur | 94.42 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 94.23 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 94.21 | |
| d1s3ja_ | 143 | Putative transcriptional regulator YusO {Bacillus | 94.1 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 94.04 | |
| d1lvaa3 | 64 | C-terminal fragment of elongation factor SelB {Moo | 94.01 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 93.8 | |
| d1r7ja_ | 90 | Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu | 93.78 | |
| d2hr3a1 | 145 | Probable transcriptional regulator PA3067 {Pseudom | 93.64 | |
| d2frha1 | 115 | Pleiotropic regulator of virulence genes, SarA {St | 93.49 | |
| d2hzta1 | 95 | Putative transcriptional regulator YtcD {Bacillus | 93.46 | |
| d2d1ha1 | 109 | Hypothetical transcriptional regulator ST1889 {Sul | 93.39 | |
| d2a61a1 | 139 | Transcriptional regulator TM0710 {Thermotoga marit | 93.35 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 93.32 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.31 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.24 | |
| d1jgsa_ | 138 | Multiple antibiotic resistance repressor, MarR {Es | 93.14 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.11 | |
| d2ev0a1 | 61 | Manganese transport regulator MntR {Bacillus subti | 93.07 | |
| d2cg4a1 | 63 | Regulatory protein AsnC {Escherichia coli [TaxId: | 93.05 | |
| d1sfxa_ | 109 | Hypothetical protein AF2008 {Archaeoglobus fulgidu | 92.95 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 92.89 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.87 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.76 | |
| d2fbia1 | 136 | Probable transcriptional regulator PA4135 {Pseudom | 92.5 | |
| d2fswa1 | 102 | Hypothetical protein PG0823 {Porphyromonas gingiva | 92.26 | |
| d2f2ea1 | 142 | Hypothetical protein PA1607 {Pseudomonas aeruginos | 92.16 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 91.75 | |
| d2fbha1 | 137 | Transcriptional regulator PA3341 {Pseudomonas aeru | 91.72 | |
| d1z7ua1 | 108 | Hypothetical protein EF0647 {Enterococcus faecalis | 91.7 | |
| d1yyva1 | 114 | Putative transcriptional regulator YtfH {Salmonell | 91.65 | |
| d1p4xa1 | 125 | Staphylococcal accessory regulator A homolog, SarS | 91.35 | |
| d1lj9a_ | 144 | Transcriptional regulator SlyA {Enterococcus faeca | 91.32 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 91.22 | |
| d2fbka1 | 172 | Transcriptional regulator DR1159 {Deinococcus radi | 91.13 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 91.09 | |
| d1z91a1 | 137 | Organic hydroperoxide resistance transcriptional r | 91.04 | |
| d2isya1 | 63 | Iron-dependent regulator IdeR {Mycobacterium tuber | 90.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.97 | |
| d3deua1 | 140 | Transcriptional regulator SlyA {Salmonella typhimu | 90.85 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 90.78 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 90.66 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.65 | |
| d1hsja1 | 115 | Staphylococcal accessory regulator A homolog, SarR | 90.56 | |
| d1p4xa2 | 125 | Staphylococcal accessory regulator A homolog, SarS | 90.32 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.22 | |
| d1jhfa1 | 71 | LexA repressor, N-terminal DNA-binding domain {Esc | 89.46 | |
| d1ku9a_ | 151 | DNA-binding protein Mj223 {Archaeon Methanococcus | 89.24 | |
| d2fxaa1 | 162 | Protease production regulatory protein Hpr {Bacill | 88.73 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 88.44 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 88.18 | |
| d2hs5a1 | 69 | Putative transcriptional regulator RHA1_ro03477 {R | 87.79 | |
| d1dpua_ | 69 | C-terminal domain of RPA32 {Human (Homo sapiens) [ | 87.29 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 86.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.42 | |
| d1i5za1 | 69 | Catabolite gene activator protein (CAP), C-termina | 85.93 | |
| d3bwga1 | 78 | Transcriptional regulator YydK {Bacillus subtilis | 85.79 | |
| d2gxba1 | 59 | Z-alpha domain of dsRNA-specific adenosine deamina | 85.15 | |
| d1zyba1 | 73 | Probable transcription regulator BT4300, C-termina | 84.49 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.41 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 84.24 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 84.03 | |
| d1q1ha_ | 88 | Transcription factor E/IIe-alpha, N-terminal domai | 83.99 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.76 | |
| d1s6la1 | 60 | Alkylmercury lyase MerB {Escherichia coli [TaxId: | 83.28 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.99 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 82.64 | |
| d1sfua_ | 70 | 34L {Yaba-like disease virus, YLDV [TaxId: 132475] | 82.44 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 82.44 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 82.34 | |
| d1xmaa_ | 103 | Predicted transcriptional regulator {Clostridium t | 82.3 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 81.1 | |
| d2zcwa1 | 82 | Transcriptional regulator TTHA1359, C-terminal dom | 80.8 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 80.67 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 80.24 | |
| d1bl0a1 | 54 | MarA {Escherichia coli [TaxId: 562]} | 80.23 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=5.3e-45 Score=321.59 Aligned_cols=241 Identities=45% Similarity=0.844 Sum_probs=209.8
Q ss_pred CChhHHHHhhcChhHHHhhhhhHHHHhcCC-ccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCC
Q 017495 129 GSVAPLFLLHHDKVFMESWYHLKDVILEGG-IPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDG 207 (370)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~ 207 (370)
.|+++++.+.+.|.+++.|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++.++.+++
T Consensus 2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~ 81 (244)
T d1fp1d2 2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG 81 (244)
T ss_dssp CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 578999999889999999999999999866 5699999999999999999999999999999999888999998886788
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHH
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLL 287 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL 287 (370)
..+|||||||+|.++..+++++|+++++++|+|++++.+...+|++++.+|+++++|.+|+|++.++||+|+|++|..+|
T Consensus 82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL 161 (244)
T d1fp1d2 82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFL 161 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHH
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHH
Confidence 99999999999999999999999999999999999999888899999999999999988999999999999999999999
Q ss_pred HHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec-CCCeeEE
Q 017495 288 KNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC-AYNSWVM 366 (370)
Q Consensus 288 ~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~-~~~~~~~ 366 (370)
++++++|+|||+|+|.|.+.++.+...........+|+.|+..+ +|++||.+||.++|++|||+.+++++. .+..+||
T Consensus 162 ~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~vi 240 (244)
T d1fp1d2 162 SNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 240 (244)
T ss_dssp HHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEE
T ss_pred HHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEE
Confidence 99999999999999999999876655444445667888888765 899999999999999999999998765 4888999
Q ss_pred EEeC
Q 017495 367 EFHK 370 (370)
Q Consensus 367 e~~k 370 (370)
|++|
T Consensus 241 E~~K 244 (244)
T d1fp1d2 241 EFYK 244 (244)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9998
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1e-43 Score=314.42 Aligned_cols=241 Identities=60% Similarity=1.164 Sum_probs=221.3
Q ss_pred CChhHHHHhhcChhHHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCC
Q 017495 129 GSVAPLFLLHHDKVFMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGL 208 (370)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~ 208 (370)
.++++++.+.+++.+++.|.+|.+++|+|+++|+..+|.++|+|+.++++..+.|+++|...+......++..++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 57899999988899999999999999999999999999999999999999999999999998888888898888744667
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHH
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLK 288 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~ 288 (370)
.+|||||||+|.++..+++++|+++++++|+|.+++.+...+|++++.+|+++++|.+|++++.++||+|+++++..+|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999888999999999999999889999999999999999999999
Q ss_pred HHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeEEEE
Q 017495 289 NCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWVMEF 368 (370)
Q Consensus 289 ~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~~e~ 368 (370)
+++++|+|||+++|+|.+.++.............+++.|+..+.+|++||.+||+++|++|||+.+++++.+...+|||+
T Consensus 163 ~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~viE~ 242 (243)
T d1kyza2 163 NCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEF 242 (243)
T ss_dssp HHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEEEEEE
T ss_pred HHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCEEEEe
Confidence 99999999999999999987765544334445678888887766899999999999999999999999999999999997
Q ss_pred e
Q 017495 369 H 369 (370)
Q Consensus 369 ~ 369 (370)
+
T Consensus 243 ~ 243 (243)
T d1kyza2 243 L 243 (243)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=7.6e-42 Score=301.51 Aligned_cols=239 Identities=33% Similarity=0.582 Sum_probs=212.4
Q ss_pred ChhHHHHhhcChhHHHhhhhhHHHHhcCC-ccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCC
Q 017495 130 SVAPLFLLHHDKVFMESWYHLKDVILEGG-IPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGL 208 (370)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~ 208 (370)
++.+++.+..++.++..|..|++.++++. ++|+..+|.++|+|+.++++..+.|+++|...+......+......+++.
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~ 81 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGL 81 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTC
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCc
Confidence 46788888888999999999999999875 57999999999999999999999999999988877666665543237788
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHHHH
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKLLK 288 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~iL~ 288 (370)
.+|||||||+|.++..+++++|+++++++|+|.+++.+...+||+++.+|+++++|.+|+|+++++||+|+|++|.++|+
T Consensus 82 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL~ 161 (244)
T d1fp2a2 82 ESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILK 161 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHHH
T ss_pred eEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999888789999999999999999999999
Q ss_pred HHHHhCCCC---cEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCCCeeE
Q 017495 289 NCWEALPEN---GKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAYNSWV 365 (370)
Q Consensus 289 ~~~~~L~pg---G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~~~ 365 (370)
+++++|+|| |+++|+|.+.++.+..+........+++.|+. . +|++||.+||+++|++|||++++++++++..+|
T Consensus 162 ~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~sv 239 (244)
T d1fp2a2 162 KCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSL 239 (244)
T ss_dssp HHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred HHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECCCCeEE
Confidence 999999998 89999999998765544333344566777765 3 899999999999999999999999999999999
Q ss_pred EEEeC
Q 017495 366 MEFHK 370 (370)
Q Consensus 366 ~e~~k 370 (370)
||++.
T Consensus 240 IE~~p 244 (244)
T d1fp2a2 240 IEIYP 244 (244)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99974
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=1.2e-38 Score=284.06 Aligned_cols=237 Identities=25% Similarity=0.407 Sum_probs=202.4
Q ss_pred CChhHHHHhhcChhHH-HhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCC
Q 017495 129 GSVAPLFLLHHDKVFM-ESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDG 207 (370)
Q Consensus 129 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~ 207 (370)
.++++++.+....... ..|.+|.+++|+|.++|+..+|.++|+|++++++....|+++|...+....+.+++.++ |++
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~ 81 (256)
T d1qzza2 3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSA 81 (256)
T ss_dssp TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTT
T ss_pred HHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Ccc
Confidence 4577777654223233 47999999999999999999999999999999999999999999988888888999888 999
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCCCCCCC-CEEEecccccCCC
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFENVPRG-DAIFLKWMLHGWT 279 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~ 279 (370)
..+|||||||+|.++..+++++|+++++++|+|++++.+++ .+|+.++.+|+++++|.+ |+|++.++||+|+
T Consensus 82 ~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~~ 161 (256)
T d1qzza2 82 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWS 161 (256)
T ss_dssp CCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGSC
T ss_pred CCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccccC
Confidence 99999999999999999999999999999999888876653 278999999999988876 9999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
++++.++|++++++|||||+|+|.|.+.++.... .......+++.|+... +|+.||.++|+++|++|||+++++++.
T Consensus 162 d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~~~~~~ 238 (256)
T d1qzza2 162 DEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALASERTS 238 (256)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCceeEEEEe
Confidence 9999999999999999999999999876543222 1245566788888875 899999999999999999999999886
Q ss_pred C-----CCeeEEEEe
Q 017495 360 A-----YNSWVMEFH 369 (370)
Q Consensus 360 ~-----~~~~~~e~~ 369 (370)
+ ...+|+|+.
T Consensus 239 ~~~~~~~~~~v~E~~ 253 (256)
T d1qzza2 239 GSTTLPFDFSILEFT 253 (256)
T ss_dssp CCSSCSSCEEEEEEE
T ss_pred CCcCccCceEEEEEE
Confidence 4 356899874
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=7.1e-37 Score=272.56 Aligned_cols=221 Identities=26% Similarity=0.434 Sum_probs=192.8
Q ss_pred HHHhhhhhHHHHhcCCccchhccCCChhhhccCCchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHH
Q 017495 143 FMESWYHLKDVILEGGIPFRRAYGMTQFEYLGTDPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTL 222 (370)
Q Consensus 143 ~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~ 222 (370)
....|.+|++++|+|+++|+..+|.++|+|+.++++....|+++|...+....+.+++.++ +++..+|||||||+|.++
T Consensus 17 ~~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~ 95 (253)
T d1tw3a2 17 ADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFA 95 (253)
T ss_dssp HGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHH
T ss_pred ccccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHH
Confidence 3357999999999999999999999999999999999999999999988888889999998 999999999999999999
Q ss_pred HHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCCCCCCC-CEEEecccccCCChhHHHHHHHHHHHhC
Q 017495 223 GMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFENVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEAL 294 (370)
Q Consensus 223 ~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L 294 (370)
..+++++|+++++++|+|.+++.+++ .++++++.+|++++.|.. |+|++.++||||+++++.++|++++++|
T Consensus 96 ~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L 175 (253)
T d1tw3a2 96 AAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEAL 175 (253)
T ss_dssp HHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTE
T ss_pred HHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhc
Confidence 99999999999999999888776653 268999999999877765 9999999999999999999999999999
Q ss_pred CCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEecCC-----CeeEEEE
Q 017495 295 PENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCCAY-----NSWVMEF 368 (370)
Q Consensus 295 ~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~~-----~~~~~e~ 368 (370)
||||+|+|.|...++.... ......+++.|+... +|+.||.++|.++|++|||++++++.++. ...++++
T Consensus 176 kPGG~l~i~e~~~~~~~~~---~~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li~~ 250 (253)
T d1tw3a2 176 EPGGRILIHERDDLHENSF---NEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVL 250 (253)
T ss_dssp EEEEEEEEEECCBCGGGCC---SHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEEEE
T ss_pred CCCcEEEEEeccCCCCCcc---hhHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEEEE
Confidence 9999999999876543222 234556788888765 89999999999999999999999887642 3445554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.82 E-value=8.4e-20 Score=158.44 Aligned_cols=165 Identities=19% Similarity=0.173 Sum_probs=119.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhh--CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCCCCCEEEecc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSR--YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVPRGDAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p~~D~i~~~~ 273 (370)
.++..+|||||||+|..+..+++. .|+.+++++|+ +.+++.|++. .++.+...|+.+ +.+..|+|++.+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~ 116 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 116 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence 457789999999999999999986 48899999999 9999988642 457788888876 444459999999
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhh-hcC------------CCcccCHH
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLA-QTT------------GGRERSKK 340 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~------------~~~~~t~~ 340 (370)
++|+++.++..++|++++++|||||.+++.|...++.+..... .......+.... ... .-...+.+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 195 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIE 195 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHH
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHH
Confidence 9999998888999999999999999999999887664221100 000000100000 000 01235889
Q ss_pred HHHHHHHhCCCCcceEEecCCCeeEEEEeC
Q 017495 341 EYEALAKNSGFSGLEIVCCAYNSWVMEFHK 370 (370)
Q Consensus 341 e~~~ll~~aGf~~v~~~~~~~~~~~~e~~k 370 (370)
++.++|++|||+.++++.-......+.+.|
T Consensus 196 ~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 196 THKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp HHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 999999999999998765434444555554
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.81 E-value=8.1e-20 Score=158.98 Aligned_cols=152 Identities=18% Similarity=0.294 Sum_probs=116.3
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~- 266 (370)
..+++..+ +++..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++++|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 45666665 8889999999999999999999875 47899998 888877653 3689999999988 76654
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHH-hhhcCCCcccCHHHHHH
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFM-LAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~t~~e~~~ 344 (370)
|+|++.+++||++|. .++|++++++|||||+|++.++..+... ......+... .....+...++.++|.+
T Consensus 82 fD~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND------AFDVFYNYVEKERDYSHHRAWKKSDWLK 153 (231)
T ss_dssp EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHHH
T ss_pred cccccccccccccCCH--HHHHHHHHHhcCCCcEEEEEeCCCCCCH------HHHHHHHHHHhhcccCcccCCCHHHHHH
Confidence 999999999999876 5889999999999999999998765431 1111111111 11112345678999999
Q ss_pred HHHhCCCCcceEEe
Q 017495 345 LAKNSGFSGLEIVC 358 (370)
Q Consensus 345 ll~~aGf~~v~~~~ 358 (370)
+|+++||+++++..
T Consensus 154 ~l~~aGf~~~~~~~ 167 (231)
T d1vl5a_ 154 MLEEAGFELEELHC 167 (231)
T ss_dssp HHHHHTCEEEEEEE
T ss_pred HHHHCCCEEEEEEE
Confidence 99999999887654
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=4.4e-19 Score=159.18 Aligned_cols=155 Identities=16% Similarity=0.189 Sum_probs=119.9
Q ss_pred HHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CC
Q 017495 193 LVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NV 263 (370)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~ 263 (370)
.....+....+ +++..+|||||||+|.++..|++++ +.+++++|+ +.+++.+++. ++++++.+|+.+ ++
T Consensus 54 ~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~ 131 (282)
T d2o57a1 54 WLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccc
Confidence 34445555555 8889999999999999999999875 678999998 8888777642 589999999988 77
Q ss_pred CCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 264 PRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 264 p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
+.+ |+|++..++||+++. .++|++++++|||||+|++.++...+..... ......+.. ......+.++
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~s~~~ 201 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRI-----KLHDMGSLGL 201 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHH-----TCSSCCCHHH
T ss_pred cccccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHHHh-----ccCCCCCHHH
Confidence 755 999999999999865 5899999999999999999998876542221 111111111 1233457899
Q ss_pred HHHHHHhCCCCcceEEec
Q 017495 342 YEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~~ 359 (370)
|.++++++||+.+.+...
T Consensus 202 ~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 202 YRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp HHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHcCCceEEEEEC
Confidence 999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.77 E-value=6.4e-19 Score=155.42 Aligned_cols=147 Identities=22% Similarity=0.269 Sum_probs=115.7
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC--C
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~--D 267 (370)
..+++.++ ..+..+|||||||+|.++..|+..+.. +++++|. +.+++.+++. ..+++.++|+.+ +.+.. |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45566665 567789999999999999998876644 7899998 8888877642 458899999987 44443 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAK 347 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~ 347 (370)
+|++.++|||+++++..++|++++++|+|||+|+|.+.+...... ..+. ..+...|+.++|+++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~-----~d~~~~rs~~~~~~l~~ 226 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK-----EDSSLTRSDIHYKRLFN 226 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET-----TTTEEEBCHHHHHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc-----cCCceeCCHHHHHHHHH
Confidence 999999999999999999999999999999999999987654210 1110 11344579999999999
Q ss_pred hCCCCcceEEe
Q 017495 348 NSGFSGLEIVC 358 (370)
Q Consensus 348 ~aGf~~v~~~~ 358 (370)
++||++++...
T Consensus 227 ~aGf~ii~~~~ 237 (254)
T d1xtpa_ 227 ESGVRVVKEAF 237 (254)
T ss_dssp HHTCCEEEEEE
T ss_pred HcCCEEEEEEe
Confidence 99999987655
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=1.5e-18 Score=151.28 Aligned_cols=151 Identities=20% Similarity=0.268 Sum_probs=116.7
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG-- 266 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~-- 266 (370)
-++...+ +++..+|||||||+|.++..+++.+ .+++++|+ +.+++.++++ +++.++++|+.+ +++.+
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 3556666 8999999999999999999999875 47899998 8888777542 579999999988 67765
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-HhhhcCCCcccCHHHHHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-MLAQTTGGRERSKKEYEAL 345 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~t~~e~~~l 345 (370)
|+|++.+++||+++. ..+|++++++|||||++++.+...++.+ ....+++.. ...........+..+|..+
T Consensus 84 D~v~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (234)
T d1xxla_ 84 DIITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP------VLDEFVNHLNRLRDPSHVRESSLSEWQAM 155 (234)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH------HHHHHHHHHHHHHCTTCCCCCBHHHHHHH
T ss_pred ceeeeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH------HHHHHHHHHHhhCCCcccccCCHHHHHHH
Confidence 999999999998865 6899999999999999999988765421 111122211 1111124556789999999
Q ss_pred HHhCCCCcceEEe
Q 017495 346 AKNSGFSGLEIVC 358 (370)
Q Consensus 346 l~~aGf~~v~~~~ 358 (370)
++++||.+..+..
T Consensus 156 ~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 156 FSANQLAYQDIQK 168 (234)
T ss_dssp HHHTTEEEEEEEE
T ss_pred HHHCCCceeEEEE
Confidence 9999998776544
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=4.5e-19 Score=153.45 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=112.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCC-CCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFE-NVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~-~~p~~--D~i~~~~v 274 (370)
..+..+|||||||+|..+..++..++ .+++++|+ +.+++.+++. .+++|+++|+.+ +.+.. |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 45678999999999999999887665 47999998 8898877642 457999999988 54443 99999999
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
+||+++++..++|++++++|+|||.+++.+....+... ++ .......++.++|.++|+++||+++
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~-----~~~~~~~~~~~~~~~l~~~aGf~ii 201 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD-----DVDSSVCRDLDVVRRIICSAGLSLL 201 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE-----TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred cccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc-----cCCceeeCCHHHHHHHHHHcCCEEE
Confidence 99999988889999999999999999999987655210 00 0113445789999999999999998
Q ss_pred eEEec
Q 017495 355 EIVCC 359 (370)
Q Consensus 355 ~~~~~ 359 (370)
+....
T Consensus 202 ~~~~q 206 (222)
T d2ex4a1 202 AEERQ 206 (222)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 87653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=3.1e-18 Score=150.39 Aligned_cols=153 Identities=16% Similarity=0.101 Sum_probs=117.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
+..+...+. +.+..+|||||||+|..+..++++++ .+++++|+ +.+++.+++. ++++|+.+|+.+..+.+
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 445666666 88899999999999999999998765 79999998 8888776542 57999999998854443
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHH
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEA 344 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ 344 (370)
|+|++..++||+++. .++|++++++|||||++++.++.....+... ..... .. ........+..+|..
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~---~~~~~---~~--~~~~~~~~~~~~~~~ 169 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQA---CG--VSSTSDFLTLPGLVG 169 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHT---TT--CSCGGGSCCHHHHHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChH---HHHHH---hc--cCCCcccCCHHHHHH
Confidence 999999999999865 5899999999999999999988765432211 11111 00 011223568899999
Q ss_pred HHHhCCCCcceEEec
Q 017495 345 LAKNSGFSGLEIVCC 359 (370)
Q Consensus 345 ll~~aGf~~v~~~~~ 359 (370)
+++++||+++.....
T Consensus 170 ~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 170 AFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHTTTBCCCEEEEC
T ss_pred HHHHcCCEEEEEEeC
Confidence 999999998876543
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=6.2e-18 Score=144.55 Aligned_cols=139 Identities=17% Similarity=0.098 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEecccccCCChh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTDE 281 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d~ 281 (370)
.+..+|||||||+|.++..+. +++++|+ +.+++.+++. +++++++|+.+ +.+.. |+|++.++|||+++.
T Consensus 35 ~~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~ 107 (208)
T d1vlma_ 35 LPEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP 107 (208)
T ss_dssp CCSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH
T ss_pred CCCCeEEEECCCCcccccccc------eEEEEeCChhhccccccc-cccccccccccccccccccccccccccccccccc
Confidence 345689999999999988774 3578998 8899887754 69999999987 66654 999999999999865
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 282 HCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 282 ~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
.++|++++++|+|||++++.++..... . ...............+...+|.+++.++|+++||+++++...
T Consensus 108 --~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~ 177 (208)
T d1vlma_ 108 --ERALKEAYRILKKGGYLIVGIVDRESF-----L-GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 177 (208)
T ss_dssp --HHHHHHHHHHEEEEEEEEEEEECSSSH-----H-HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred --ccchhhhhhcCCCCceEEEEecCCcch-----h-HHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEEE
Confidence 689999999999999999988754321 0 000000100011112445679999999999999998887653
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.69 E-value=5.1e-17 Score=120.79 Aligned_cols=105 Identities=52% Similarity=0.899 Sum_probs=91.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc
Q 017495 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI 94 (370)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~ 94 (370)
.+++..-..++++.+++.+++|++|++|||+|+|... |++.++|..|||.+++.+||+.+..|+|+||.|++.|+
T Consensus 3 ~dee~~l~a~~L~~~~v~pmaLk~AieLgI~DiI~~~-----G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~v 77 (107)
T d1kyza1 3 SDEEANLFAMQLASASVLPMILKSALELDLLEIIAKA-----GPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYII 77 (107)
T ss_dssp CHHHHHHHHHHHHTTTHHHHHHHHHHHTTHHHHHHTT-----CTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHc-----CCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCc
Confidence 4677788889999999999999999999999999876 55678999999999999777778899999999999999
Q ss_pred eeccccCCCCCccccceecchhhhhhhcCC
Q 017495 95 LRCSLQNGDNGQVERVYGAAPICKFLIKNQ 124 (370)
Q Consensus 95 l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~ 124 (370)
|.+..++.++|.+++.|.+||.+++|++++
T Consensus 78 f~~~~~~~~dg~~~~~Y~LTpvsk~Lv~de 107 (107)
T d1kyza1 78 LTCSVRTQQDGKVQRLYGLATVAKYLVKNE 107 (107)
T ss_dssp EEEEEEECTTSCEEEEEEECHHHHHHSCCT
T ss_pred eEEeeecCCCCCeeeEEecchhHHhhcCCC
Confidence 987544445666567899999999998763
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=1.3e-16 Score=141.98 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=121.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
.+.+++.+. +++..+|||||||.|.++..+++.++ .+++++|+ +..++.+++. .++.+...|..+.....
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~f 118 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPV 118 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccch
Confidence 557788777 88999999999999999999988875 69999998 7776665431 45777777765432223
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCC-----ccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQ-----ASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
|.|++..+++|+++++...++++++++|||||+++|.+.+..+..... .........++..-..++++...+.++
T Consensus 119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~ 198 (280)
T d2fk8a1 119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEM 198 (280)
T ss_dssp SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHh
Confidence 999999999999988888999999999999999999887654321000 000011112333333346888899999
Q ss_pred HHHHHHhCCCCcceEEec
Q 017495 342 YEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~~ 359 (370)
+.+.++++||+++.+...
T Consensus 199 l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 199 MVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp HHHHHHHTTCBCCCCEEC
T ss_pred hhhhHHhhccccceeeec
Confidence 999999999999987764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.67 E-value=8e-17 Score=144.05 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=111.6
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~- 266 (370)
..++..+....++.+|||||||+|.++..+++.+|. .+++++|+ +.+++.+++. .+++|+.+|+.+ ++++.
T Consensus 16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~f 95 (281)
T d2gh1a1 16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKY 95 (281)
T ss_dssp HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCE
T ss_pred HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCc
Confidence 345444433667899999999999999999998874 78999998 8888877642 368899999987 55555
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----CCCcc---chhhhhhhhHHhhhcCCCc-cc
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP-----ENQAS---SHIVFEQDLFMLAQTTGGR-ER 337 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~-----~~~~~---~~~~~~~d~~~~~~~~~~~-~~ 337 (370)
|+|++.++|||++++ ..+|++++++|||||++++.|+...... ..... .....+...........+. ..
T Consensus 96 D~v~~~~~l~~~~d~--~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (281)
T d2gh1a1 96 DIAICHAFLLHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGN 173 (281)
T ss_dssp EEEEEESCGGGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTT
T ss_pred eEEEEehhhhcCCCH--HHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999876 5889999999999999999986321100 00000 0011111111111111222 22
Q ss_pred CHHHHHHHHHhCCCCcceEEec
Q 017495 338 SKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 338 t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
...++..+|+++||+.+++.-.
T Consensus 174 i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 174 IGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp GGGTHHHHHHHTTCEEEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEEEEe
Confidence 2356888999999999876543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.66 E-value=7.1e-16 Score=137.22 Aligned_cols=163 Identities=15% Similarity=0.107 Sum_probs=122.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~ 266 (370)
.+.+++.+. +++..+|||||||.|.++..+++.+ +++++++++ +..++.+++ .+++++...|+.+.-...
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f 128 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV 128 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence 557777777 8899999999999999999999998 589999997 655554432 268999999986532224
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCC-----CCCccchhhhhhhhHHhhhcCCCcccCHHH
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVP-----ENQASSHIVFEQDLFMLAQTTGGRERSKKE 341 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~-----~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e 341 (370)
|.|++..+++|+.......++++++++|||||++++.+.+...+. ..+.........++..-..+++|...+.++
T Consensus 129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~ 208 (285)
T d1kpga_ 129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM 208 (285)
T ss_dssp SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence 999999999999877778999999999999999999888653311 001001111122223233346888899999
Q ss_pred HHHHHHhCCCCcceEEec
Q 017495 342 YEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 342 ~~~ll~~aGf~~v~~~~~ 359 (370)
+.++++++||+++++..+
T Consensus 209 ~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 209 VQECASANGFTVTRVQSL 226 (285)
T ss_dssp HHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHhchhhcccccc
Confidence 999999999999988765
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.65 E-value=1.7e-16 Score=117.85 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=81.9
Q ss_pred ChhHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcC
Q 017495 13 SVDQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASY 92 (370)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~ 92 (370)
+.+.-++...+++++.||+.+++|++|+++||||+|... ++|+|++|||+++++ ++.+++.|.|+||+|++.
T Consensus 3 ~~e~~qaq~~l~~~~~gf~~s~aL~~aveLgi~d~l~~~-------~~p~t~~eLa~~~~~-~~~~~~~L~RlLR~L~~~ 74 (101)
T d1fp2a1 3 PSEIFKAQALLYKHIYAFIDSMSLKWAVEMNIPNIIQNH-------GKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHN 74 (101)
T ss_dssp STHHHHHHHHHHHHHTTHHHHHHHHHHHHTTHHHHHHHH-------TSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHHHHc-------CCCCCHHHHHHHcCC-CCccchHHHHHHHHHHhC
Confidence 344556777999999999999999999999999999864 248999999999998 333456799999999999
Q ss_pred CceeccccCCCCCccccceecchhhhhhhcCC
Q 017495 93 DILRCSLQNGDNGQVERVYGAAPICKFLIKNQ 124 (370)
Q Consensus 93 g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~ 124 (370)
|+|.++. + .+++|++|+.+++|++++
T Consensus 75 gi~~~~~---~---~~~~Y~lt~~s~~Lv~~~ 100 (101)
T d1fp2a1 75 GFFEIIT---K---EEESYALTVASELLVRGS 100 (101)
T ss_dssp TSEEEEE---S---SSEEEEECHHHHTTSTTS
T ss_pred Cceeeec---C---CCCeEecCHHHHHhhcCC
Confidence 9998642 1 157899999999998765
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=1.1e-15 Score=136.45 Aligned_cols=164 Identities=17% Similarity=0.194 Sum_probs=121.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENVPRG 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~p~~ 266 (370)
.+.+++.+. +++..+|||||||.|.++..++++++ ++++++++ +..++.+++ ..++.+...|+.......
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 567777777 88999999999999999999999986 69999997 655554432 257888888864322223
Q ss_pred CEEEecccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCC-----CccchhhhhhhhHHhhhcCCC
Q 017495 267 DAIFLKWMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVESILPLVPEN-----QASSHIVFEQDLFMLAQTTGG 334 (370)
Q Consensus 267 D~i~~~~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~ 334 (370)
|.|++..++.|+++ +.-..++++++++|||||++++...+.++.... ..........++..-..+++|
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg 207 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG 207 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCC
Confidence 99999999999886 356799999999999999999998887543110 000011112223333334688
Q ss_pred cccCHHHHHHHHHhCCCCcceEEecC
Q 017495 335 RERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 335 ~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
...+.+++...++++||++..+...+
T Consensus 208 ~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 208 RLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred CCCCHHHHHhhhcccccccceeeecc
Confidence 89999999999999999998887763
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.63 E-value=6.5e-16 Score=133.50 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=104.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC-CCCCC-CEEEecccccCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE-NVPRG-DAIFLKWMLHGWT 279 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~-~~p~~-D~i~~~~vLh~~~ 279 (370)
+.++.+|||||||+|.++..+++.. .+++++|+ +.+++.+++. .++.++.+|+.+ +.++. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 4457799999999999999998865 46899998 8888887643 569999999877 44444 9999999999998
Q ss_pred hhHHHHHHHHHH-HhCCCCcEEEEEeecCCCCCCC-----CccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCc
Q 017495 280 DEHCLKLLKNCW-EALPENGKVIIVESILPLVPEN-----QASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSG 353 (370)
Q Consensus 280 d~~~~~iL~~~~-~~L~pgG~lli~e~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~ 353 (370)
++ ..+|++++ ++|+|||.+++.-+....-... ............... ..+...++.++++++++++||++
T Consensus 96 d~--~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~Gf~i 171 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQV 171 (225)
T ss_dssp SH--HHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEE
T ss_pred CH--HHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHCCCEE
Confidence 76 68899998 7899999999976532210000 000000000000000 12344678999999999999998
Q ss_pred ceEE
Q 017495 354 LEIV 357 (370)
Q Consensus 354 v~~~ 357 (370)
++..
T Consensus 172 ~~~~ 175 (225)
T d2p7ia1 172 TYRS 175 (225)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.62 E-value=8.4e-16 Score=114.45 Aligned_cols=106 Identities=39% Similarity=0.640 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCC--CCCCCcchHHHHHHHHhcC
Q 017495 15 DQEEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPT--KNPDAPFLLDRMLSLLASY 92 (370)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~--~~~~~~~~l~~~L~~L~~~ 92 (370)
.+++.+-..++++.++..+++|++|++|||+|++... .||++++|++|||.++++ +||..+..|.|+||.|++.
T Consensus 2 ~~~~~~l~a~~L~~~~v~pMaLk~AieLgI~diI~~~----G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~ 77 (110)
T d1fp1d1 2 TEDSACLSAMVLTTNLVYPAVLNAAIDLNLFEIIAKA----TPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASY 77 (110)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHTTHHHHHHTC----SSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHcCCHHHHHHc----CCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHc
Confidence 4678899999999999999999999999999999865 034567999999999875 3444456799999999999
Q ss_pred CceeccccCCCCCccccceecchhhhhhhcCC
Q 017495 93 DILRCSLQNGDNGQVERVYGAAPICKFLIKNQ 124 (370)
Q Consensus 93 g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~~~ 124 (370)
|+|.+..++.++|.+++.|.+|+.+++|++++
T Consensus 78 ~vf~~~~~~~~~g~~e~~Y~Ltpvsk~Lv~de 109 (110)
T d1fp1d1 78 SVLTSTTRTIEDGGAERVYGLSMVGKYLVPDE 109 (110)
T ss_dssp TSEEEEEEECTTSCEEEEEEECTTGGGGSTTC
T ss_pred CccccccccCCCCCeeeEEecchhhHhhcCCC
Confidence 99986544445665567899999999999875
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.62 E-value=2.5e-16 Score=135.82 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=88.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG--D 267 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~--D 267 (370)
.++..+ +++..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+.++.+|+.+ +++.. |
T Consensus 29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD 104 (226)
T d1ve3a1 29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD 104 (226)
T ss_dssp HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence 444443 346689999999999999999984 678999998 8888877642 468899999988 66654 9
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|++.+++||+++.+..++|+++.++|||||++++....
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 999999999999888889999999999999999987764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=2.3e-15 Score=127.33 Aligned_cols=107 Identities=16% Similarity=0.134 Sum_probs=88.0
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CCCCC-CE
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NVPRG-DA 268 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~p~~-D~ 268 (370)
++.... +..+.+|||||||+|..+..|+++. .+++++|+ +.+++.+++ .+++.+...|+.+ ..++. |+
T Consensus 22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 98 (198)
T d2i6ga1 22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF 98 (198)
T ss_dssp HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence 333343 4456799999999999999999974 58899998 778876543 2568999999988 44444 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++..++||+++++..++|++++++|+|||++++.....
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 99 ILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp EEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred EEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 999999999999888999999999999999999987754
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=3.4e-15 Score=128.75 Aligned_cols=141 Identities=12% Similarity=0.046 Sum_probs=107.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----CCCCCeEEeccCCCCC--CC-C-CEEEecccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----SFPGVEHVGGDMFENV--PR-G-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~~~rv~~~~~D~~~~~--p~-~-D~i~~~~vL 275 (370)
+++..+|||||||+|..+.++++..|+..++++|+ |.+++.++ ...++..+.+|...+. .. . |++++.+.+
T Consensus 72 ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~~~~ 151 (230)
T d1g8sa_ 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYEDV 151 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEeeccc
Confidence 67889999999999999999999999999999998 87776544 3467888888887732 22 2 887888888
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
|++. +...+++++++.|||||++++.......+...+ .....+++.+.|+++||++++
T Consensus 152 ~~~~--~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~--------------------~~~~~~e~~~~L~~aGF~ive 209 (230)
T d1g8sa_ 152 AQPN--QAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD--------------------PKEIFKEQKEILEAGGFKIVD 209 (230)
T ss_dssp CSTT--HHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC--------------------HHHHHHHHHHHHHHHTEEEEE
T ss_pred cchH--HHHHHHHHHHHhcccCceEEEEeeccccCCCCC--------------------HHHHHHHHHHHHHHcCCEEEE
Confidence 8765 457889999999999999999887654332111 111246788999999999999
Q ss_pred EEecC---CCeeEEE
Q 017495 356 IVCCA---YNSWVME 367 (370)
Q Consensus 356 ~~~~~---~~~~~~e 367 (370)
...+. .++.++.
T Consensus 210 ~idL~py~~~H~~vv 224 (230)
T d1g8sa_ 210 EVDIEPFEKDHVMFV 224 (230)
T ss_dssp EEECTTTSTTEEEEE
T ss_pred EecCCCCcCCeEEEE
Confidence 88764 3455444
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.56 E-value=1.1e-14 Score=122.55 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=91.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------------------CCCeEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------------------PGVEHVGG 257 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------------------~rv~~~~~ 257 (370)
.+...+. .+++.+|||||||+|..+..|+++ +.+++++|+ +.+++.+++. ..+++..+
T Consensus 11 ~~~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 11 QYWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 4445555 778899999999999999999986 689999998 8888877642 34688999
Q ss_pred cCCCCCC--C-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 258 DMFENVP--R-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 258 D~~~~~p--~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
|+.+..+ . . |+|++..++|++++++...++++++++|||||++++.......
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 9887332 1 2 9999999999999988899999999999999999987765543
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.54 E-value=7.3e-15 Score=105.79 Aligned_cols=81 Identities=22% Similarity=0.298 Sum_probs=72.9
Q ss_pred HHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCC
Q 017495 23 AVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNG 102 (370)
Q Consensus 23 ~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~ 102 (370)
.+..+.+++.+++|++|+++||||+|.++ |+|++|||+++|+ ++..+.|+||+|++.|+|++..
T Consensus 5 ~l~~l~~~~~~~aL~~av~L~ifd~l~~g---------p~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~~--- 68 (85)
T d1tw3a1 5 TLIRLGSLHTPMVVRTAATLRLVDHILAG---------ARTVKALAARTDT----RPEALLRLIRHLVAIGLLEEDA--- 68 (85)
T ss_dssp HHHHHHCSHHHHHHHHHHHTTHHHHHHTT---------CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE---
T ss_pred HHHHHHchHHHHHHHHHHHcCcHHHhccC---------CCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEecC---
Confidence 35566889999999999999999999876 8999999999999 9999999999999999998641
Q ss_pred CCCccccceecchhhhhhhcCC
Q 017495 103 DNGQVERVYGAAPICKFLIKNQ 124 (370)
Q Consensus 103 ~~g~~~~~y~~~~~~~~l~~~~ 124 (370)
++.|++|+.++.|.+++
T Consensus 69 -----~~~y~lt~~s~~L~~Dh 85 (85)
T d1tw3a1 69 -----PGEFVPTEVGELLADDH 85 (85)
T ss_dssp -----TTEEEECTTGGGGSTTS
T ss_pred -----CCeEecCHHHHHhhcCC
Confidence 58999999999988764
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.54 E-value=1.7e-14 Score=126.31 Aligned_cols=108 Identities=21% Similarity=0.263 Sum_probs=88.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~- 266 (370)
...+...+. ..+..+|||||||+|..+..|++. +.+++++|+ +.+++.+++. .++++.++|+.+ +.+..
T Consensus 30 ~~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~f 106 (251)
T d1wzna1 30 VEEIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEF 106 (251)
T ss_dssp HHHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCE
T ss_pred HHHHHHHhc-CCCCCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccccccchheehhhhhccccccc
Confidence 334555555 567789999999999999999985 458999998 8899887753 479999999988 66655
Q ss_pred CEEEec-ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 DAIFLK-WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 D~i~~~-~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+|++. .++++++.++..++|++++++|||||++++...
T Consensus 107 D~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 107 DAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred chHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 999885 688888888889999999999999999988543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.53 E-value=2.3e-15 Score=131.77 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=78.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC-CCCCC-CEEEec-ccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE-NVPRG-DAIFLK-WMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~-~~p~~-D~i~~~-~vLh~ 277 (370)
++.+|||||||+|.++..+++.. .+++++|+ +.+++.|++. .+++++++|+.+ +.+.. |+|++. +++++
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence 45799999999999999999975 47999998 8888877642 479999999987 44444 998874 67777
Q ss_pred C-ChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 278 W-TDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 278 ~-~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+ +.++..++|++++++|+|||.|++
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 6 455778999999999999999986
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.52 E-value=1.2e-14 Score=105.96 Aligned_cols=86 Identities=21% Similarity=0.263 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 18 EIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+.+..+++++.+++.+++|++|+++||||+|.++ |+|++|||+++|+ +++.+.|+||+|++.|+|++
T Consensus 6 ~~~d~ll~~~~~~~~~~~L~~aveL~ifd~L~~g---------p~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~ 72 (92)
T d1qzza1 6 QDLDVLLKNLGNLVTPMALRVAATLRLVDHLLAG---------ADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEG 72 (92)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTHHHHHHTT---------CCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred hhHHHHHHHHHchHHHHHHHHHHHcCchHHHhCC---------CCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeee
Confidence 5788999999999999999999999999999886 8999999999999 99999999999999999997
Q ss_pred cccCCCCCccccceecchhhhhhhc
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
+ +++ ...|++|+.+..|.+
T Consensus 73 ~----~d~--~~~~~~t~~g~lL~d 91 (92)
T d1qzza1 73 G----EKQ--GRPLRPTRLGMLLAD 91 (92)
T ss_dssp C----CC---CCCCEECTTGGGGST
T ss_pred e----cCC--CceecccHHHHhccC
Confidence 4 222 357888998888764
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=6.1e-14 Score=121.19 Aligned_cols=131 Identities=9% Similarity=-0.059 Sum_probs=101.2
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------------------CCCCeEEeccCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------------------FPGVEHVGGDMF 260 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------------------~~rv~~~~~D~~ 260 (370)
.++..+|||+|||+|..+..|++. +.+++++|+ +.+++.+++ ..++++.++|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 567889999999999999999984 679999998 888875421 146899999998
Q ss_pred C--CCCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcc
Q 017495 261 E--NVPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRE 336 (370)
Q Consensus 261 ~--~~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 336 (370)
+ +.+.+ |+|+...++|++++++...+++++.++|||||++++.....+...... .-..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~g------------------pp~~ 182 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPG------------------PPFY 182 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCC------------------SSCC
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCC------------------CCCC
Confidence 7 22333 999999999999999999999999999999999998877654321100 0012
Q ss_pred cCHHHHHHHHHhCCCCcceE
Q 017495 337 RSKKEYEALAKNSGFSGLEI 356 (370)
Q Consensus 337 ~t~~e~~~ll~~aGf~~v~~ 356 (370)
.+.+++.+++.. +|.+..+
T Consensus 183 ~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 183 VPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp CCHHHHHHHHTT-TEEEEEE
T ss_pred CCHHHHHHHhcC-CCEEEEE
Confidence 478899999965 6765444
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4e-14 Score=126.14 Aligned_cols=153 Identities=17% Similarity=0.087 Sum_probs=97.7
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh----CCCC--eEEEeeh-hhHHHhCCC----C---CCCeE--Eec
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR----YPCI--KGISFDL-PHVLANAPS----F---PGVEH--VGG 257 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~--~~~~~D~-p~~~~~a~~----~---~rv~~--~~~ 257 (370)
.++.++..+...++..+|||||||+|.++..+++. +++. +++++|. +.+++.+++ . ..+.+ ...
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 34455555543445568999999999987776554 5654 5689998 777776543 1 22332 333
Q ss_pred cCC-------CCCCC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhH-H
Q 017495 258 DMF-------ENVPR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLF-M 327 (370)
Q Consensus 258 D~~-------~~~p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~ 327 (370)
++. .+.+. . |+|++.++|||++|. .++|++++++|+|||.|+|....... . ....+..+. .
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~~----~---~~~l~~~~~~~ 177 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGSS----G---WDKLWKKYGSR 177 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTTS----H---HHHHHHHHGGG
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCcc----h---HHHHHHHHHHh
Confidence 221 12222 2 999999999999875 58999999999999999998664321 0 011111111 1
Q ss_pred hhhcCCCcccCHHHHHHHHHhCCCCcce
Q 017495 328 LAQTTGGRERSKKEYEALAKNSGFSGLE 355 (370)
Q Consensus 328 ~~~~~~~~~~t~~e~~~ll~~aGf~~v~ 355 (370)
..........+.++|.++|++.||+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 178 FPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp SCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred cCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 1111123456889999999999998544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=3.4e-14 Score=123.73 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCC--CEEEe-cccccCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRG--DAIFL-KWMLHGWT 279 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~--D~i~~-~~vLh~~~ 279 (370)
.++..+|||||||+|.++..|++. +.+++++|+ +.+++.+++.....++.+|+.+ +++.+ |+|++ ..++||++
T Consensus 40 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~ 117 (246)
T d2avna1 40 LKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVE 117 (246)
T ss_dssp CCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCS
T ss_pred cCCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhh
Confidence 446789999999999999999885 578999998 9999988875555678899887 67654 99987 57999998
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|. .++|++++++|||||.+++..+
T Consensus 118 d~--~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 118 NK--DKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp CH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred hH--HHHHHHHHhhcCcCcEEEEEEC
Confidence 76 5789999999999999998764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.8e-15 Score=128.67 Aligned_cols=139 Identities=12% Similarity=0.024 Sum_probs=94.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCC---------------------------
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGV--------------------------- 252 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv--------------------------- 252 (370)
.++.+|||||||+|.++..++... ..+++++|+ +.+++.+++. ..+
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 456799999999998887666542 337999998 8888876531 000
Q ss_pred ----eEEeccCCC-----CCCCC--CEEEecccccCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchh
Q 017495 253 ----EHVGGDMFE-----NVPRG--DAIFLKWMLHGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHI 319 (370)
Q Consensus 253 ----~~~~~D~~~-----~~p~~--D~i~~~~vLh~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~ 319 (370)
.....+... +.+.+ |+|++..+|||++. ++...+++++++.|||||++++.+.......
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~-------- 200 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-------- 200 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE--------
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccc--------
Confidence 111112111 23333 99999999999753 4567899999999999999999887643310
Q ss_pred hhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEEec
Q 017495 320 VFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIVCC 359 (370)
Q Consensus 320 ~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~~~ 359 (370)
. ..+. .......+.++++++|++|||+++++...
T Consensus 201 ~-~~~~-----~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 201 M-VGKR-----EFSCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp E-ETTE-----EEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred e-eccc-----cccccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 0 0000 00122358999999999999998887543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.43 E-value=1.6e-13 Score=120.27 Aligned_cols=105 Identities=18% Similarity=0.107 Sum_probs=83.3
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CC-CC-
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NV-PR- 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~-p~- 265 (370)
.++..+ .++..+|||||||+|..+..+++.. ..+++++|+ +.+++.|+++ .++.+..+|+.. +. +.
T Consensus 16 ~lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~ 92 (252)
T d1ri5a_ 16 CLIRLY--TKRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGK 92 (252)
T ss_dssp HHHHHH--CCTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSS
T ss_pred HHHHHh--CCCcCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccc
Confidence 344544 4567899999999999999998863 347999998 8888877531 468899999976 33 23
Q ss_pred C-CEEEecccccCC--ChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLHGW--TDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh~~--~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++..++||+ +.++...+|++++++|+|||++++..
T Consensus 93 ~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 93 EFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp CEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 3 999999999996 34567799999999999999999854
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=2.6e-13 Score=115.14 Aligned_cols=144 Identities=11% Similarity=0.001 Sum_probs=99.9
Q ss_pred hcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCCC---CEEEec
Q 017495 202 YRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPRG---DAIFLK 272 (370)
Q Consensus 202 ~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~~---D~i~~~ 272 (370)
++ +++..+|||||||+|..+.++++..|+.+++++|+ |.+++.+++ ..++.++.+|... +.+.. ++.++.
T Consensus 52 l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~ 130 (209)
T d1nt2a_ 52 LK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIY 130 (209)
T ss_dssp CC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEE
T ss_pred CC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEE
Confidence 44 77899999999999999999999999889999998 888887654 3689999999887 33322 332333
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
+.++++. +...+|+++++.|||||++++.......+...+. ....++..+.+ ++||+
T Consensus 131 ~~~~~~~--~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~--------------------~~~~~~~~~~l-~~gf~ 187 (209)
T d1nt2a_ 131 QDIAQKN--QIEILKANAEFFLKEKGEVVIMVKARSIDSTAEP--------------------EEVFKSVLKEM-EGDFK 187 (209)
T ss_dssp ECCCSTT--HHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCH--------------------HHHHHHHHHHH-HTTSE
T ss_pred ecccChh--hHHHHHHHHHHHhccCCeEEEEEEccccCCCCCH--------------------HHHHHHHHHHH-HcCCE
Confidence 4455544 4468899999999999999998754322111100 00011222333 47999
Q ss_pred cceEEecC---CCeeEEEEe
Q 017495 353 GLEIVCCA---YNSWVMEFH 369 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~~ 369 (370)
+++...+. ..+.++-+|
T Consensus 188 i~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 188 IVKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp EEEEEECTTTCTTEEEEEEE
T ss_pred EEEEEccCCCccCcEEEEEE
Confidence 99887664 466666655
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.9e-13 Score=120.79 Aligned_cols=92 Identities=18% Similarity=0.232 Sum_probs=80.6
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-CCCCeEEeccCCC-CCCCC--CEEEecccccCCCh
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-FPGVEHVGGDMFE-NVPRG--DAIFLKWMLHGWTD 280 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh~~~d 280 (370)
.+..+|||||||+|.++..+++.+|+.+++++|+ +.+++.+++ ..++++..+|+.+ +++.+ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 4678999999999999999999999999999998 888887765 3789999999988 77655 99999888876
Q ss_pred hHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 281 EHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 281 ~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+++++++|||||+|++..+.
T Consensus 160 ------~~e~~rvLkpgG~l~~~~p~ 179 (268)
T d1p91a_ 160 ------AEELARVVKPGGWVITATPG 179 (268)
T ss_dssp ------HHHHHHHEEEEEEEEEEEEC
T ss_pred ------HHHHHHHhCCCcEEEEEeeC
Confidence 45688999999999998864
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=7.9e-13 Score=111.03 Aligned_cols=103 Identities=19% Similarity=0.240 Sum_probs=81.9
Q ss_pred HHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCCCCCCC--
Q 017495 198 ILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFENVPRG-- 266 (370)
Q Consensus 198 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~~~p~~-- 266 (370)
++..+. ..+..+|||||||+|.++..+++..+ +++++|+ +.+++.+++ ..++++..+|+++..+..
T Consensus 44 Li~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~f 120 (194)
T d1dusa_ 44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKY 120 (194)
T ss_dssp HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCE
T ss_pred HHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCc
Confidence 455555 66788999999999999999998776 5777887 777777653 246899999998855543
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+|++...+|+. .+....+++.+.+.|+|||++++..
T Consensus 121 D~Ii~~~p~~~~-~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 121 NKIITNPPIRAG-KEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp EEEEECCCSTTC-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEcccEEec-chhhhhHHHHHHHhcCcCcEEEEEE
Confidence 999998887754 3456789999999999999998743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.39 E-value=4.2e-13 Score=116.94 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred HHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEE
Q 017495 182 VFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHV 255 (370)
Q Consensus 182 ~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~ 255 (370)
.|-.+.+..+...+..+... ..+..+|||+|||+|.++..+++. +.+++++|+ |.+++.++++ -++++.
T Consensus 98 aFGTG~H~TT~l~l~~l~~~---~~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~ 172 (254)
T d2nxca1 98 AFGTGHHETTRLALKALARH---LRPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp ----CCSHHHHHHHHHHHHH---CCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred ccCccccchhhHHHHHHHhh---cCccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence 44444444444555444433 346789999999999999988774 468999998 9999887753 356788
Q ss_pred eccCCCCCCC--CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 256 GGDMFENVPR--GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 256 ~~D~~~~~p~--~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
.+|+.+..+. .|+|+++...+ ....+++.++++|||||+|++.+....
T Consensus 173 ~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~LkpGG~lilSgil~~------------------------- 222 (254)
T d2nxca1 173 EGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVPGGRALLTGILKD------------------------- 222 (254)
T ss_dssp ESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEEEEEEEEEEEEGG-------------------------
T ss_pred eccccccccccccchhhhccccc-----cHHHHHHHHHHhcCCCcEEEEEecchh-------------------------
Confidence 8887764443 39998764433 456889999999999999998654321
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecC
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCA 360 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~ 360 (370)
..+++.+.++++||++++.....
T Consensus 223 ----~~~~v~~~~~~~Gf~~~~~~~~~ 245 (254)
T d2nxca1 223 ----RAPLVREAMAGAGFRPLEEAAEG 245 (254)
T ss_dssp ----GHHHHHHHHHHTTCEEEEEEEET
T ss_pred ----hHHHHHHHHHHCCCEEEEEEEEC
Confidence 14578889999999998877653
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.8e-13 Score=118.19 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=90.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCC---CCCCC--CEEE----
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFE---NVPRG--DAIF---- 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~---~~p~~--D~i~---- 270 (370)
....+|||||||+|..+..+++..+ .+++++|+ |.+++.+++. .++.++.+|... +.+.+ |.|+
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 3567999999999999999988654 47899998 8898887642 456677776543 34443 6665
Q ss_pred -ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhC
Q 017495 271 -LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNS 349 (370)
Q Consensus 271 -~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~a 349 (370)
..+.++|+.+ ...++++++++|||||+|++.+...... .+............+.+...|.++
T Consensus 131 ~~~~~~~~~~~--~~~~~~~~~r~LkpGG~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~l~~a 193 (229)
T d1zx0a1 131 PLSEETWHTHQ--FNFIKNHAFRLLKPGGVLTYCNLTSWGE---------------LMKSKYSDITIMFEETQVPALLEA 193 (229)
T ss_dssp CCBGGGTTTHH--HHHHHHTHHHHEEEEEEEEECCHHHHHH---------------HTTTTCSCHHHHHHHHTHHHHHHT
T ss_pred ccccccccccC--HHHHHHHHHHHcCCCcEEEEEecCCcch---------------hhhhhhhhcchhhhhHHHHHHHHC
Confidence 5677777664 4689999999999999998754322110 000000011111245667788899
Q ss_pred CCCcceEEe
Q 017495 350 GFSGLEIVC 358 (370)
Q Consensus 350 Gf~~v~~~~ 358 (370)
||+..++..
T Consensus 194 gF~~~~i~~ 202 (229)
T d1zx0a1 194 GFRRENIRT 202 (229)
T ss_dssp TCCGGGEEE
T ss_pred CCeeEEEEE
Confidence 999877643
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4.1e-13 Score=118.36 Aligned_cols=138 Identities=13% Similarity=0.052 Sum_probs=93.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CC---------------------------
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PG--------------------------- 251 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~r--------------------------- 251 (370)
..++.+|||||||+|.+....+.... .+++++|. +.+++.+++. ..
T Consensus 52 ~~~g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 52 EVSGRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp CSCCSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 34678999999999977654444332 37999998 8888865421 00
Q ss_pred ----CeEEeccCCCC-------CCC-C-CEEEecccccCCCh--hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCcc
Q 017495 252 ----VEHVGGDMFEN-------VPR-G-DAIFLKWMLHGWTD--EHCLKLLKNCWEALPENGKVIIVESILPLVPENQAS 316 (370)
Q Consensus 252 ----v~~~~~D~~~~-------~p~-~-D~i~~~~vLh~~~d--~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~ 316 (370)
......|+..+ .+. . |+|++.++||+.+. ++..++|++++++|||||+|++.+......
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~------ 204 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW------ 204 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE------
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcc------
Confidence 12344565542 112 2 99999999999763 356799999999999999999988765321
Q ss_pred chhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcceEE
Q 017495 317 SHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGLEIV 357 (370)
Q Consensus 317 ~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v~~~ 357 (370)
. ....... .....+.++++++|+++||++++..
T Consensus 205 --~--~~~~~~~----~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 205 --Y--LAGEARL----TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp --E--EETTEEE----ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --c--ccCCccc----ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 0000000 1123589999999999999987644
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4e-12 Score=115.34 Aligned_cols=112 Identities=16% Similarity=0.284 Sum_probs=90.4
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC---------------CCCCeEEecc
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS---------------FPGVEHVGGD 258 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~~~D 258 (370)
...+++.+. .++..+|||||||+|..+..+++.++..+++++|+ +.+++.++. ..+++++.+|
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 456777776 88889999999999999999999999889999998 777766542 3579999999
Q ss_pred CCC-CCCC----CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 259 MFE-NVPR----GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 259 ~~~-~~p~----~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
+.+ ++.+ +|+|++.+.+| + ++....|+++.+.|||||++++.+...+.+
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKpGg~iv~~~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKEGGRIVSSKPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred ccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCCCcEEEEecccCCCC
Confidence 987 4332 48888866654 2 456788999999999999999988776543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.25 E-value=2.2e-11 Score=104.07 Aligned_cols=141 Identities=17% Similarity=0.086 Sum_probs=98.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCC--CC--CC--CEEEec
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFEN--VP--RG--DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~--~p--~~--D~i~~~ 272 (370)
+++..+|||+|||+|.++.++++.. |+-+++++|+ |.+++.++. ...+..+..|...+ .+ .. |+|++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6788999999999999999999985 7889999998 888776543 35677888887652 22 12 55543
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFS 352 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~ 352 (370)
.+++. ++...+++++++.|||||+++|+......+.... ......+..++ .+.||+
T Consensus 150 -d~~~~--~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~--------------------~~~v~~~v~~l-~~~gf~ 205 (227)
T d1g8aa_ 150 -DVAQP--TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKE--------------------PEQVFREVERE-LSEYFE 205 (227)
T ss_dssp -CCCST--THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSC--------------------HHHHHHHHHHH-HHTTSE
T ss_pred -Ecccc--chHHHHHHHHHHhcccCCeEEEEEECCccCCCCC--------------------HHHHHHHHHHH-HHcCCE
Confidence 44443 3557889999999999999999765432221110 00011234444 456999
Q ss_pred cceEEecC---CCeeEEEEeC
Q 017495 353 GLEIVCCA---YNSWVMEFHK 370 (370)
Q Consensus 353 ~v~~~~~~---~~~~~~e~~k 370 (370)
+++...+. .++.++.++|
T Consensus 206 iie~i~L~p~~~~H~~vv~rK 226 (227)
T d1g8aa_ 206 VIERLNLEPYEKDHALFVVRK 226 (227)
T ss_dssp EEEEEECTTTSSSEEEEEEEC
T ss_pred EEEEEcCCCCCCceEEEEEEe
Confidence 99887764 4688888887
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.25 E-value=2.3e-12 Score=111.74 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=79.1
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~ 266 (370)
..++..++ ..+..+|||+|||+|.++..|++. .|..+++.+|. ++.++.++++ .++++..+|+.+..++.
T Consensus 75 ~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~ 153 (250)
T d1yb2a1 75 SYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ 153 (250)
T ss_dssp ------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred HHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccc
Confidence 34555555 788999999999999999999987 58889999998 8777776542 57999999998865554
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|.|++ +++++ ..+|..+.++|||||+|++..+
T Consensus 154 ~fD~V~l-----d~p~p--~~~l~~~~~~LKpGG~lv~~~P 187 (250)
T d1yb2a1 154 MYDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLP 187 (250)
T ss_dssp CEEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred eeeeeee-----cCCch--HHHHHHHHHhcCCCceEEEEeC
Confidence 99876 34544 3779999999999999998644
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.24 E-value=5.1e-12 Score=106.43 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=77.0
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---CCCCC--CEEEeccccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh 276 (370)
-.|||||||+|.++..+++.+|+..++++|+ +.++..+.+ ..+|.++.+|+.. .++.+ |.|++.+...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 4799999999999999999999999999997 766665432 2689999999876 25544 9888877776
Q ss_pred CCChhHH------HHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDEHC------LKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~~~------~~iL~~~~~~L~pgG~lli~e 304 (370)
++...+. ..+|+.++++|||||.|+|..
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5443321 479999999999999999864
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.23 E-value=4.5e-12 Score=113.32 Aligned_cols=98 Identities=22% Similarity=0.208 Sum_probs=74.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----------CCCeEEeccCCC---CCC--CC-C
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----------PGVEHVGGDMFE---NVP--RG-D 267 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------~rv~~~~~D~~~---~~p--~~-D 267 (370)
..+..+|||||||+|..+..|+++ +.+++++|+ +.+++.|++. .+..+...|+.. ..| .. |
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 445679999999999999999986 578999998 8888877542 234556666643 222 33 8
Q ss_pred EEEe-cccccCCCh-----hHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 268 AIFL-KWMLHGWTD-----EHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 268 ~i~~-~~vLh~~~d-----~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
+|++ ..+++|+++ ++...+|++++++|||||.|++..
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 7775 568888765 357789999999999999988843
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.22 E-value=5.4e-12 Score=110.64 Aligned_cols=127 Identities=20% Similarity=0.219 Sum_probs=96.1
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR 265 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~ 265 (370)
...++..++ ..+..+|||+|||+|.++..+++.. |+.+++++|. +++++.++++ +++.+..+|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 345666666 8899999999999999999999885 7889999998 8888887653 5688888887654443
Q ss_pred C--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHH
Q 017495 266 G--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYE 343 (370)
Q Consensus 266 ~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~ 343 (370)
. |.|+ ++++++ ..+|+++.++|||||+|++..++.. ..++..
T Consensus 171 ~~~D~V~-----~d~p~p--~~~l~~~~~~LKpGG~lv~~~P~~~-----------------------------Qv~~~~ 214 (266)
T d1o54a_ 171 KDVDALF-----LDVPDP--WNYIDKCWEALKGGGRFATVCPTTN-----------------------------QVQETL 214 (266)
T ss_dssp CSEEEEE-----ECCSCG--GGTHHHHHHHEEEEEEEEEEESSHH-----------------------------HHHHHH
T ss_pred cceeeeE-----ecCCCH--HHHHHHHHhhcCCCCEEEEEeCccc-----------------------------HHHHHH
Confidence 3 6554 466766 4789999999999999998654321 123455
Q ss_pred HHHHhCCCCcceEEe
Q 017495 344 ALAKNSGFSGLEIVC 358 (370)
Q Consensus 344 ~ll~~aGf~~v~~~~ 358 (370)
+.|++.||..+++..
T Consensus 215 ~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 215 KKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHSSEEEEEEEC
T ss_pred HHHHHCCceeEEEEE
Confidence 677888987666554
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.22 E-value=6.1e-12 Score=109.70 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=86.8
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC---------CCCCeEEeccCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS---------FPGVEHVGGDMFE-N 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~D~~~-~ 262 (370)
...++..++ .++..+|||+|||+|.++..|++. .|+-+++.+|. ++.++.+++ .+++.++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 445666666 889999999999999999999998 68999999998 888887764 2679999999987 5
Q ss_pred CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 263 VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 263 ~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
+++. |.|++ |++++ ..++..++++|||||++++..++.
T Consensus 164 ~~~~~fDaV~l-----dlp~P--~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAP--WEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp CCTTCEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEESSH
T ss_pred ccCCCcceEEE-----ecCCH--HHHHHHHHhccCCCCEEEEEeCcc
Confidence 6654 99876 45666 478999999999999999876543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.19 E-value=6.6e-12 Score=104.52 Aligned_cols=101 Identities=20% Similarity=0.166 Sum_probs=80.5
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCC-CCC--C
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFE-NVP--R 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~-~~p--~ 265 (370)
.++..+. ..+..+|||||||+|.++..+++.. .+++++|. |.+++.++++ ++++++.+|+.+ ..+ .
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 4455555 7788999999999999999998864 48999998 8988887752 589999999877 333 2
Q ss_pred CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 ~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++....++ ...+++.+.+.|||||++++...
T Consensus 101 ~D~v~~~~~~~~-----~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 101 IDIAVVGGSGGE-----LQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp EEEEEESCCTTC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred cCEEEEeCcccc-----chHHHHHHHHHhCcCCEEEEEee
Confidence 399998776654 24789999999999999988543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.18 E-value=1.3e-11 Score=104.78 Aligned_cols=99 Identities=21% Similarity=0.296 Sum_probs=80.2
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC-CC
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP-RG 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p-~~ 266 (370)
..++..+. .++..+|||||||+|..+..+++.. ++.+++.+|. +.+++.+++. .++.++.+|..+..+ .+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 34566666 8889999999999999999999875 6789999998 8888877652 678899999877333 33
Q ss_pred --CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 267 --DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 --D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|+|++...+++.++ .+.+.|||||+|++.
T Consensus 144 ~fD~I~~~~~~~~~p~--------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPE--------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCH--------HHHHHEEEEEEEEEE
T ss_pred chhhhhhhccHHHhHH--------HHHHhcCCCcEEEEE
Confidence 99999999998874 255779999999884
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=1.4e-10 Score=101.49 Aligned_cols=128 Identities=15% Similarity=0.185 Sum_probs=97.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCCCC--CEEEec--cc
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVPRG--DAIFLK--WM 274 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p~~--D~i~~~--~v 274 (370)
..+.+|||+|||+|..+..++..+|+.+++++|. +..++.++++ .+|+++.+|++++.+.. |+|+++ ++
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 4567899999999999999999999999999998 8888887753 57999999999876653 999885 11
Q ss_pred -----------ccCCCh----------hHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCC
Q 017495 275 -----------LHGWTD----------EHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTG 333 (370)
Q Consensus 275 -----------Lh~~~d----------~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 333 (370)
+.+-|. ....++++.+.+.|+|||.+++ |.- .
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig--~------------------------ 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHG--W------------------------ 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECC--S------------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EEC--c------------------------
Confidence 211110 1245789999999999999887 211 0
Q ss_pred CcccCHHHHHHHHHhCCCCcceEEecCCCe
Q 017495 334 GRERSKKEYEALAKNSGFSGLEIVCCAYNS 363 (370)
Q Consensus 334 ~~~~t~~e~~~ll~~aGf~~v~~~~~~~~~ 363 (370)
...+...+++++.||+.++++..-.+.
T Consensus 240 ---~q~~~v~~~l~~~gf~~i~~~kDl~g~ 266 (274)
T d2b3ta1 240 ---QQGEAVRQAFILAGYHDVETCRDYGDN 266 (274)
T ss_dssp ---SCHHHHHHHHHHTTCTTCCEEECTTSS
T ss_pred ---hHHHHHHHHHHHCCCCeEEEEECCCCC
Confidence 014578899999999988877764433
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.16 E-value=4e-11 Score=110.51 Aligned_cols=112 Identities=17% Similarity=0.286 Sum_probs=86.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------------CCCeE-Eec
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------PGVEH-VGG 257 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------~rv~~-~~~ 257 (370)
+..+++.+. +.+..+|||||||+|..+..++..++..+++++|+ +.+++.|++. ..+.+ ..+
T Consensus 205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~ 283 (406)
T d1u2za_ 205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK 283 (406)
T ss_dssp HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence 456777777 88899999999999999999999999889999998 8888877532 12233 445
Q ss_pred cCCC-C-----CCCCCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 258 DMFE-N-----VPRGDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 258 D~~~-~-----~p~~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
++.. + ++.+|+|++.+.+| +++....|+++.+.|||||+|++.+...+..
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn~~f---~~~l~~~L~ei~r~LKPGGrIVs~~~~~~~~ 339 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNNFLF---DEDLNKKVEKILQTAKVGCKIISLKSLRSLT 339 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC---CHHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred chhhccccccccccceEEEEecccC---chHHHHHHHHHHHhcCCCcEEEEecccCCCc
Confidence 5554 1 23348888876554 3567899999999999999999988776543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.14 E-value=7.7e-11 Score=99.03 Aligned_cols=95 Identities=26% Similarity=0.444 Sum_probs=73.4
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC---CCCCC--CEEEeccccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE---NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~---~~p~~--D~i~~~~vLh 276 (370)
-.|||||||+|.++..+++.+|+..++++|. +.++..+.+ ..++.+..+|+.. .++.. |.|++.+.-.
T Consensus 33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPdP 112 (204)
T d1yzha1 33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSDP 112 (204)
T ss_dssp CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCCC
T ss_pred CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccccc
Confidence 4799999999999999999999999999997 766665532 2679999999876 24543 8877654332
Q ss_pred CCChh-H------HHHHHHHHHHhCCCCcEEEEEe
Q 017495 277 GWTDE-H------CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 277 ~~~d~-~------~~~iL~~~~~~L~pgG~lli~e 304 (370)
|+.. + ...+|+.+++.|+|||.|.+..
T Consensus 113 -w~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 113 -WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp -CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred -ccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 3221 1 1478999999999999998854
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=1.7e-10 Score=98.41 Aligned_cols=100 Identities=19% Similarity=0.143 Sum_probs=77.9
Q ss_pred HHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEeccCCCC
Q 017495 197 KILDVYR-GFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPSF-----------PGVEHVGGDMFEN 262 (370)
Q Consensus 197 ~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~D~~~~ 262 (370)
.++..+. +.++..+|||||||+|..+..+++. .|..+++++|. +++++.++++ .++.++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 4444442 2667889999999999999888876 57889999998 8888876542 5788999998873
Q ss_pred CC-CC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 263 VP-RG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 263 ~p-~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
.+ .+ |+|++...+++.++ .+.+.|||||+|++.-
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~--------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQ--------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCH--------HHHHTEEEEEEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCH--------HHHhhcCCCcEEEEEE
Confidence 33 33 99999999998774 3568899999999843
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=2.8e-10 Score=102.12 Aligned_cols=105 Identities=17% Similarity=0.173 Sum_probs=81.6
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh-CCCCeEEEeeh-hhHHHhCCC-----------------CCCCeEE
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSR-YPCIKGISFDL-PHVLANAPS-----------------FPGVEHV 255 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-----------------~~rv~~~ 255 (370)
...++..++ ..++.+|||+|||+|.++..|++. .|+-+++.+|. ++.++.|++ .+++.+.
T Consensus 87 ~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 446666676 889999999999999999999987 58889999998 887776543 1579999
Q ss_pred eccCCCC---CCCC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 256 GGDMFEN---VPRG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 256 ~~D~~~~---~p~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.+|+... .+.. |.|++ +++++ ..+|..+.++|||||+|++.-++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P--~~~l~~~~~~LKpGG~lv~~~P~i 215 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNP--HVTLPVFYPHLKHGGVCAVYVVNI 215 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSST--TTTHHHHGGGEEEEEEEEEEESSH
T ss_pred ecchhhcccccCCCCcceEee-----cCcCH--HHHHHHHHHhccCCCEEEEEeCCH
Confidence 9998762 2332 88876 45554 357999999999999999966543
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.97 E-value=5.9e-10 Score=92.89 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCcccHHH----HHHHhhC----CCCeEEEeeh-hhHHHhCCCC---------------------------
Q 017495 206 DGLKVLVDVGGGIGVTL----GMITSRY----PCIKGISFDL-PHVLANAPSF--------------------------- 249 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~----~~l~~~~----p~~~~~~~D~-p~~~~~a~~~--------------------------- 249 (370)
.+..+|+++|||+|.-. +.+.+.. +.+++++.|+ +.+++.|+..
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45689999999999843 3344331 3457889998 8888766421
Q ss_pred ----------CCCeEEeccCCCC-C-CC-C-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 250 ----------PGVEHVGGDMFEN-V-PR-G-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 250 ----------~rv~~~~~D~~~~-~-p~-~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
..+.+...+.... . +. . |+|+|.++|++++++...++|++++++|+|||.|++-
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 1245566666652 2 22 3 9999999999999999999999999999999998874
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.87 E-value=6.7e-10 Score=99.96 Aligned_cols=95 Identities=23% Similarity=0.211 Sum_probs=72.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCC-CCCCC--CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFE-NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh 276 (370)
+.++|||||||+|.++..+++..+ .+++++|.......+++ .++|.++.+|+.+ +.+.. |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 568999999999999998888543 47899997333222221 2679999999988 55543 9998877766
Q ss_pred CCChh-HHHHHHHHHHHhCCCCcEEEE
Q 017495 277 GWTDE-HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 277 ~~~d~-~~~~iL~~~~~~L~pgG~lli 302 (370)
++..+ ....++..+.+.|+|||+++-
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 65443 467899999999999999874
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=1.2e-09 Score=98.78 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=72.2
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC-------CCCCeEEeccCCC-CCCCC--CEEEeccccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS-------FPGVEHVGGDMFE-NVPRG--DAIFLKWMLH 276 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~D~~~-~~p~~--D~i~~~~vLh 276 (370)
+..+|||||||+|.++..+++.. ..+++++|...++..+++ .+++.++.+|+.+ +.|.. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 46899999999999998877753 348899998545444432 2679999999988 66643 9999877666
Q ss_pred CCChh-HHHHHHHHHHHhCCCCcEEEE
Q 017495 277 GWTDE-HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 277 ~~~d~-~~~~iL~~~~~~L~pgG~lli 302 (370)
+...+ ....++..+.+.|||||+++-
T Consensus 117 ~~~~e~~~~~~~~a~~r~LkpgG~iiP 143 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eeccchhHHHHHHHHHhccCCCeEEEe
Confidence 54433 456788989999999998863
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.87 E-value=1.5e-09 Score=92.20 Aligned_cols=96 Identities=19% Similarity=0.237 Sum_probs=75.6
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCCCCCC-C--CE
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFENVPR-G--DA 268 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~~~p~-~--D~ 268 (370)
.++..++ ..+..+|||||||+|.++..|++.. .+++.+|. +...+.+++ ..++.++.+|....+++ + |+
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 4555566 8889999999999999998888864 47888887 777766543 47899999998774443 3 99
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|++...+++.++ .+.+.|+|||+|++.
T Consensus 138 Iiv~~a~~~ip~--------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLC--------KPYEQLKEGGIMILP 164 (224)
T ss_dssp EEESSBBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred HHhhcchhhhhH--------HHHHhcCCCCEEEEE
Confidence 999999988774 245789999999984
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=5.3e-09 Score=93.76 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=73.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC------CCCCCCeEEeccCCC-CCCC-C-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA------PSFPGVEHVGGDMFE-NVPR-G-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a------~~~~rv~~~~~D~~~-~~p~-~-D~i~~~~v 274 (370)
..++.+|||||||+|.++..+++..+ .+++++|. +.+.... ...+++.++.+|+.+ ..+. . |+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44678999999999999998888654 48999998 4443211 112679999999988 5554 3 99999877
Q ss_pred ccCCChh-HHHHHHHHHHHhCCCCcEEEE
Q 017495 275 LHGWTDE-HCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 275 Lh~~~d~-~~~~iL~~~~~~L~pgG~lli 302 (370)
.|+...+ ....++....+.|+|||+++-
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred eeecccccccHHHHHHHHhcCCCCcEEec
Confidence 7775544 455778888899999999874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.70 E-value=7.9e-09 Score=87.00 Aligned_cols=98 Identities=20% Similarity=0.246 Sum_probs=76.4
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCCCCCC-C-
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFENVPR-G- 266 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~~~p~-~- 266 (370)
..++..++ ..+..+|||||||+|..+..+++.. +.+++.+|. +..++.+++ ..++.++.+|.....+. +
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 34555566 8888999999999999998887754 356888887 777776654 27899999999884443 3
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|.|++...+++.++. +.+.|+|||+|++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKIGGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence 999999999887743 45679999999984
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.70 E-value=1.6e-08 Score=87.81 Aligned_cols=120 Identities=12% Similarity=0.090 Sum_probs=89.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCCC--CEEEeccc
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPRG--DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~~--D~i~~~~v 274 (370)
.+++.+|||+|||+|.++..+++. +..+++++|+ |..++.++++ +++++..+|..+-.++. |.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 457889999999999999999986 4568999998 8888776542 57999999998743443 98887422
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCCCcc
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGFSGL 354 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf~~v 354 (370)
.....+|..+.+.|+|||.|.+.+.+..+. ......+.+.++.+..||++.
T Consensus 184 ------~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~-----------------------~~~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 184 ------VRTHEFIPKALSIAKDGAIIHYHNTVPEKL-----------------------MPREPFETFKRITKEYGYDVE 234 (260)
T ss_dssp ------SSGGGGHHHHHHHEEEEEEEEEEEEEEGGG-----------------------TTTTTHHHHHHHHHHTTCEEE
T ss_pred ------CchHHHHHHHHhhcCCCCEEEEEecccccc-----------------------chhhHHHHHHHHHHHcCCceE
Confidence 123467888999999999998876653221 011235667888889999764
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.69 E-value=1.4e-08 Score=86.18 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHHHhhc-CCCCCCeEEEEcCcccHHHHHHHhh------CCCCeEEEeeh-hhHHHhCCCC-----------CCCeEEec
Q 017495 197 KILDVYR-GFDGLKVLVDVGGGIGVTLGMITSR------YPCIKGISFDL-PHVLANAPSF-----------PGVEHVGG 257 (370)
Q Consensus 197 ~l~~~~~-~~~~~~~vLDvG~G~G~~~~~l~~~------~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~ 257 (370)
.++..+. +..+..+|||||||+|..+..+++. .+..+++.+|. ++.++.++++ .++.++.+
T Consensus 69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~ 148 (223)
T d1r18a_ 69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG 148 (223)
T ss_dssp HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence 4444441 2678899999999999999887765 24568999997 8777766542 47999999
Q ss_pred cCCCCCC-CC--CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 258 DMFENVP-RG--DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 258 D~~~~~p-~~--D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|..+..+ .+ |.|++...+++.++ .+.+.|+|||+|++.
T Consensus 149 d~~~~~~~~~~fD~Iiv~~a~~~~p~--------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 149 DGRKGYPPNAPYNAIHVGAAAPDTPT--------ELINQLASGGRLIVP 189 (223)
T ss_dssp CGGGCCGGGCSEEEEEECSCBSSCCH--------HHHHTEEEEEEEEEE
T ss_pred ccccccccccceeeEEEEeechhchH--------HHHHhcCCCcEEEEE
Confidence 9987433 23 99999999988774 356899999999884
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.69 E-value=5.8e-09 Score=86.29 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=86.2
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCC-C-----
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFE-N----- 262 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~-~----- 262 (370)
..++++.+. ..+...+||++||+|..+..+++++|+.+++++|. +.+++.+++ ..++.++.+++.+ .
T Consensus 12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~ 90 (192)
T d1m6ya2 12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT 90 (192)
T ss_dssp HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence 456777776 67788999999999999999999999999999998 999987764 2689999999865 1
Q ss_pred CC-CC-CEEEecccc-----cCC--ChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 263 VP-RG-DAIFLKWML-----HGW--TDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 263 ~p-~~-D~i~~~~vL-----h~~--~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+ .. |.|++-..+ -.- .-......|..+.++|+|||+++++.+...
T Consensus 91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~ 145 (192)
T d1m6ya2 91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL 145 (192)
T ss_dssp TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence 22 22 877764332 110 011345889999999999999999887543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.34 E-value=1.7e-07 Score=74.42 Aligned_cols=93 Identities=14% Similarity=-0.012 Sum_probs=66.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCC--CCCC--CCEEEeccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFE--NVPR--GDAIFLKWM 274 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~--~~p~--~D~i~~~~v 274 (370)
...+|||+|||+|.++...+.+.. .+++.+|. +.+++.+++ .++++++.+|... ..+. .|+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 578999999999999998888755 48999998 777765543 2579999999876 2322 299988421
Q ss_pred ccCCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 017495 275 LHGWTDEHCLKLLKNCWE--ALPENGKVIIV 303 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~--~L~pgG~lli~ 303 (370)
. .......+|..+.. .|+|||.+++-
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~~g~iiiE 120 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSEQVMVVCE 120 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence 1 12344566776654 58999988763
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.32 E-value=1.6e-07 Score=78.98 Aligned_cols=94 Identities=14% Similarity=0.145 Sum_probs=68.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCC-------CC--CE
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVP-------RG--DA 268 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p-------~~--D~ 268 (370)
++.+|||||||+|..+..+++..+ +.+++.+|. +...+.++.. ++|+++.||..+..+ .. |+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 478999999999999999999875 579999998 8777776542 579999999876221 12 88
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
|++-+ +.........+.++.+.|+|||.|++-
T Consensus 136 ifiD~---~~~~~~~~~~l~~~~~lLkpGGvIv~D 167 (214)
T d2cl5a1 136 VFLDH---WKDRYLPDTLLLEKCGLLRKGTVLLAD 167 (214)
T ss_dssp EEECS---CGGGHHHHHHHHHHTTCEEEEEEEEES
T ss_pred eeecc---cccccccHHHHHHHhCccCCCcEEEEe
Confidence 88752 211222234567777889999976653
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.8e-06 Score=74.11 Aligned_cols=72 Identities=10% Similarity=-0.014 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC-------CCCC--CE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN-------VPRG--DA 268 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~-------~p~~--D~ 268 (370)
+...++||||||+|..+..|+.++|+++++++|. +.+++.|+++ +++.++..+.... .... |+
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 139 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF 139 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred cccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence 3457999999999999999999999999999998 8888887753 5788776554431 1222 99
Q ss_pred EEecccccC
Q 017495 269 IFLKWMLHG 277 (370)
Q Consensus 269 i~~~~vLh~ 277 (370)
|+++==.+.
T Consensus 140 ivsNPPY~~ 148 (250)
T d2h00a1 140 CMCNPPFFA 148 (250)
T ss_dssp EEECCCCC-
T ss_pred EEecCcccc
Confidence 988765553
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=3.4e-07 Score=77.04 Aligned_cols=98 Identities=12% Similarity=0.164 Sum_probs=75.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCC-------CCCCeEEeccCCCCC--------CCC-
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPS-------FPGVEHVGGDMFENV--------PRG- 266 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~D~~~~~--------p~~- 266 (370)
..++++|||||||+|..+.++++..| +.+++.+|. +...+.+++ .++++++.||..+.. +..
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 34688999999999999999999986 679999997 777666654 268999999986511 222
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|+|++.+ ........+..+.+.|+|||.+++-+...
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~GGvii~Dn~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence 8888752 22345678899999999999998855543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.19 E-value=3.7e-07 Score=81.05 Aligned_cols=99 Identities=17% Similarity=0.163 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC-----------CCCCeEEeccCCC---CCCCC-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS-----------FPGVEHVGGDMFE---NVPRG-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~D~~~---~~p~~-D~i 269 (370)
+.+++||.||+|.|..+..+++..|..+++++|+ |.+++.+++ .+|++++.+|..+ ..+.. |+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4678999999999999999998878889999999 999886653 2689999999987 22333 999
Q ss_pred Eeccc--ccC-CChhH--HHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLKWM--LHG-WTDEH--CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~~v--Lh~-~~d~~--~~~iL~~~~~~L~pgG~lli~e 304 (370)
++-.. ... -+... ...+++.+++.|+|||.+++.-
T Consensus 156 i~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 156 IIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 86431 110 00000 2478999999999999988754
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.18 E-value=4.7e-07 Score=81.05 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=72.5
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---C---CCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---V---PRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~---p~~-D~i 269 (370)
.++..+|||++||+|.++..++.... .+++.+|. +..++.++++ ++++++.+|+++. . ... |+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V 221 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV 221 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence 35678999999999999999987643 48999998 8888877652 4689999998762 1 122 999
Q ss_pred Eecc---cccCCChh----HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 270 FLKW---MLHGWTDE----HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~---vLh~~~d~----~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
++.- ..+.-... .-..++..+.++|+|||.|+....
T Consensus 222 i~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 222 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred hcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9832 22111111 124588889999999999998764
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=2e-06 Score=74.43 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCCCC---C-CEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENVPR---G-DAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~p~---~-D~i~~~ 272 (370)
+..+++|+|||+|..+..+++ +|+.+++++|. +..++.++++ +++.+..+|++++.+. . |+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 456899999999999999875 69999999998 8888877652 5788899999885442 2 999885
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.11 E-value=9.8e-07 Score=72.69 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=50.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-CCCeEEeccCCCCCCCCCEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-PGVEHVGGDMFENVPRGDAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~D~~~~~p~~D~i~~~ 272 (370)
.+.+|||+|||+|.++..++...+ .+++++|. +.+++.++++ .+++++.+|+.+.....|+|+++
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N 114 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN 114 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence 368999999999999887777543 47999998 8888877764 67999999987532223999885
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.09 E-value=7.5e-07 Score=78.12 Aligned_cols=98 Identities=22% Similarity=0.227 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--C-CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--N-VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~-~p~~-D~i~ 270 (370)
+.+.+||-||+|.|..+..+++..|..+++.+|+ |.+++.+++ .+|++++.+|..+ . .+.. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777788999998 999988764 2689999999887 2 2233 9999
Q ss_pred ecccccCCChhH---HHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEH---CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~---~~~iL~~~~~~L~pgG~lli~ 303 (370)
+-..-..-.... ...+++.+++.|+|||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 743221100000 158999999999999999875
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.08 E-value=1.4e-06 Score=76.00 Aligned_cols=98 Identities=19% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------------CCCCeEEeccCCC--CCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------------FPGVEHVGGDMFE--NVPR 265 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------------~~rv~~~~~D~~~--~~p~ 265 (370)
-+++.+||.||+|.|..+..+++ ++..+++.+|+ |.+++.+++ .+|++++.+|... ....
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred CCCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence 35678999999999999999887 56678999998 999887652 3689999999876 2223
Q ss_pred C-CEEEecccccCCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 017495 266 G-DAIFLKWMLHGWTDEH---CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 266 ~-D~i~~~~vLh~~~d~~---~~~iL~~~~~~L~pgG~lli~e 304 (370)
. |+|++-.. ....... ...+++.+++.|+|||.+++.-
T Consensus 149 ~yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 3 99987433 2222111 1478999999999999988753
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.07 E-value=3e-06 Score=72.30 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC----CCCeEEeccCCC-CCCCC-C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF----PGVEHVGGDMFE-NVPRG-D 267 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----~rv~~~~~D~~~-~~p~~-D 267 (370)
...+++.+. ..+..+|||||||+|.++..|++.. .+++++|. +..++..++. ++++++.+|+.+ +++.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 456777666 7788999999999999999999974 47888887 6666665543 579999999998 77655 6
Q ss_pred EEEecccccCCChhHHHHH
Q 017495 268 AIFLKWMLHGWTDEHCLKL 286 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~i 286 (370)
..+..+.-++++.+-...+
T Consensus 95 ~~vv~NLPY~Ist~il~~~ 113 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKV 113 (245)
T ss_dssp EEEEEECCSSSCHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHH
Confidence 7777888899997543333
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.07 E-value=9.8e-07 Score=74.51 Aligned_cols=96 Identities=15% Similarity=0.121 Sum_probs=74.9
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCCC---------CCC-
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFENV---------PRG- 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~~---------p~~- 266 (370)
.++++|||||+++|..+..+++..| +.+++.+|. |...+.++++ ++|+++.+|..+.. ...
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f 137 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 137 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence 3578999999999999999999987 578999997 7777666542 67999999987521 122
Q ss_pred CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 267 DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
|+|++-. + .......++.+.+.|+|||.|++-+..
T Consensus 138 D~iFiDa----~-k~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 138 DFIFVDA----D-KDNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp SEEEECS----C-STTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred eEEEecc----c-hhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 9999852 2 234578899999999999998885543
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.5e-06 Score=75.82 Aligned_cols=98 Identities=16% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC---CCCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE---NVPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~---~~p~~-D~i~ 270 (370)
+.+++||-||+|.|..+..+++..+..+++++|+ |.+++.+++ .+|++++.+|... ..++. |+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4678999999999999999998777789999998 999988864 2799999999876 22334 9998
Q ss_pred ecccccCCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 017495 271 LKWMLHGWTDEH---CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 271 ~~~vLh~~~d~~---~~~iL~~~~~~L~pgG~lli~e 304 (370)
+-. .+...... ...+++.+++.|+|||.+++.-
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 753 22111111 1378999999999999998754
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.03 E-value=1.1e-05 Score=68.40 Aligned_cols=85 Identities=11% Similarity=0.203 Sum_probs=64.3
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhC----CCCCCCeEEeccCCC-CCCCC-
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANA----PSFPGVEHVGGDMFE-NVPRG- 266 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~D~~~-~~p~~- 266 (370)
....+++... ..+..+|||||||+|.++..|++.. .++++++. +..++.. ...++++++.+|+.+ +++..
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCc--CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 4556777665 7788999999999999999999974 46777775 5555443 335789999999998 66655
Q ss_pred CEEEecccccCCChh
Q 017495 267 DAIFLKWMLHGWTDE 281 (370)
Q Consensus 267 D~i~~~~vLh~~~d~ 281 (370)
...+..+.-++.+.+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 666678888877654
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.02 E-value=1.4e-06 Score=75.65 Aligned_cols=98 Identities=19% Similarity=0.155 Sum_probs=74.1
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC--C-CCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE--N-VPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~--~-~p~~-D~i~ 270 (370)
+.+.+||-||+|.|..+..+++..+..+++.+|+ |.+++.+++ .+|++++.+|... . .++. |+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4678999999999999999998777789999998 999887654 3689999999876 2 2233 9998
Q ss_pred ecccccCCChhH--HHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDEH--CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~~--~~~iL~~~~~~L~pgG~lli~ 303 (370)
+-..=..-+... ...+++.+++.|+|||.++..
T Consensus 154 ~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp ESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 743211100000 247899999999999998875
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.02 E-value=7.4e-07 Score=79.47 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=70.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCC---C---CCC-CEEEec
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFEN---V---PRG-DAIFLK 272 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~---~---p~~-D~i~~~ 272 (370)
+..+|||++||+|.++.+++.. ..+++.+|. +.+++.++++ ++++++.+|.++. . .+. |+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4689999999999999998863 458999998 8888877642 5789999998761 1 122 999973
Q ss_pred ccccCCCh-------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGWTD-------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d-------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
---...+. ..-..+++.+.+.|+|||.|++...
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21110111 1124789999999999999988654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.98 E-value=4.2e-06 Score=73.53 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCCC------CC-CCE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFENV------PR-GDA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~~------p~-~D~ 268 (370)
..++.+|||+.||+|.++..++.. +.+++.+|. +.+++.++++ .+++++.+|+++.. .. .|+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 456789999999999999998874 568999998 8888877642 36899999997621 12 299
Q ss_pred EEec---ccccC----CC-hhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 269 IFLK---WMLHG----WT-DEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 269 i~~~---~vLh~----~~-d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
|++. +.-.. +. ......+++.+.++|+|||.+++.....
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s 254 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS 254 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence 9972 11110 11 1234567788999999999877766543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.97 E-value=2.3e-06 Score=74.94 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC---CCCC-C-CEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE---NVPR-G-DAI 269 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~---~~p~-~-D~i 269 (370)
+.+.+||=||+|.|..+.++++..|-.+++.+|+ |.+++.+++ .+|++++.+|..+ ..++ . |+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4678999999999999999998767678999999 999888765 3789999999876 2333 3 999
Q ss_pred EecccccCCChhH---HHHHHHHHHHhCCCCcEEEEEe
Q 017495 270 FLKWMLHGWTDEH---CLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 270 ~~~~vLh~~~d~~---~~~iL~~~~~~L~pgG~lli~e 304 (370)
++-..= ...... ...+++.+++.|+|||.+++.-
T Consensus 159 i~D~~d-p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 159 IVDSSD-PIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp EECCCC-TTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCC-CCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 874321 111111 2478999999999999999854
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.92 E-value=2.1e-06 Score=75.56 Aligned_cols=98 Identities=22% Similarity=0.183 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----------CCCCeEEeccCCC---CCCCC-CEEE
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----------FPGVEHVGGDMFE---NVPRG-DAIF 270 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~D~~~---~~p~~-D~i~ 270 (370)
+.+.+||-||+|.|..+..+++..|-.+++.+|+ |.+++.+++ .+|++++.+|..+ ..... |+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4678999999999999999998766678999999 999887754 2689999999876 22233 9998
Q ss_pred ecccccCCChh--HHHHHHHHHHHhCCCCcEEEEE
Q 017495 271 LKWMLHGWTDE--HCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 271 ~~~vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~ 303 (370)
+-..--.-+.. -...+++.+++.|+|||.++..
T Consensus 185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp ECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 74321111111 1247899999999999999985
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.81 E-value=1.8e-05 Score=65.30 Aligned_cols=66 Identities=20% Similarity=0.106 Sum_probs=49.6
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-----CCCeEEeccCCCCCCCCCEEEecc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-----PGVEHVGGDMFENVPRGDAIFLKW 273 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~D~~~~~p~~D~i~~~~ 273 (370)
.+.+|||+|||+|.++..++.+ +..+++++|. +.+++.++++ .++++..+|..+.....|+|++.-
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~-g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nP 117 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLL-GAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP 117 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC
T ss_pred CCCEEEECcCcchHHHHHHHHc-CCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcC
Confidence 4579999999999999988765 3458999998 8877766542 467888888765322349998853
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=7.1e-05 Score=60.39 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=75.3
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeehhhHHHhCCCCCCCeEEeccCCCC---------CC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDLPHVLANAPSFPGVEHVGGDMFEN---------VP 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~D~~~~---------~p 264 (370)
+.++.+.+.=+++..+|||+||+.|.++..+.+.. +..+++++|+..+ .....+.++.+|+.+. ..
T Consensus 10 L~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~----~~i~~~~~~~~d~~~~~~~~~~~~~~~ 85 (180)
T d1ej0a_ 10 LDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM----DPIVGVDFLQGDFRDELVMKALLERVG 85 (180)
T ss_dssp HHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC----CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred HHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc----cccCCceEeecccccchhhhhhhhhcc
Confidence 45676676646788899999999999999888764 5578899997332 2346789999999762 11
Q ss_pred C--CCEEEecccccCCCh----h-----HHHHHHHHHHHhCCCCcEEEEEee
Q 017495 265 R--GDAIFLKWMLHGWTD----E-----HCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 265 ~--~D~i~~~~vLh~~~d----~-----~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. .|+|++-....--.. + -+...|.-+.+.|+|||.+++=-+
T Consensus 86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F 137 (180)
T d1ej0a_ 86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence 2 299988554332111 1 123677788899999999998443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.74 E-value=7.2e-06 Score=72.71 Aligned_cols=99 Identities=18% Similarity=0.122 Sum_probs=70.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--------CCCeEEeccCCCC------CCCC-CE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--------PGVEHVGGDMFEN------VPRG-DA 268 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~D~~~~------~p~~-D~ 268 (370)
..+..+|||+.||+|.++.+.+.. ...+++.+|. +..++.++++ .+++++.+|+++. .... |+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 446789999999999999887763 3347899998 7777765532 4689999999762 1222 99
Q ss_pred EEec--------ccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLK--------WMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~--------~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|++. .-++.. ..+-.++++.+.+.|+|||.|++...
T Consensus 221 Ii~DPP~f~~~~~~~~~~-~~~~~~L~~~a~~ll~pgG~l~~~sc 264 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSV-SKDYHKLIRQGLEILSENGLIIASTN 264 (317)
T ss_dssp EEECCCCC-----CCCCH-HHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EEEcChhhccchhHHHHH-HHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 9973 111110 01235789999999999999998553
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.71 E-value=5.1e-06 Score=66.96 Aligned_cols=94 Identities=11% Similarity=0.042 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC---CC-CC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN---VP-RG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~---~p-~~-D~i~~ 271 (370)
.....+|||+|||+|.++.+.+.+ +.+++.+|. +.+++.++++ .++.....|.+.. .. +. |+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 456789999999999999988875 457888998 8888776642 3344444443221 11 22 99987
Q ss_pred cccccCCChhHHHHHHHHH--HHhCCCCcEEEEEe
Q 017495 272 KWMLHGWTDEHCLKLLKNC--WEALPENGKVIIVE 304 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~--~~~L~pgG~lli~e 304 (370)
.== ++.... +++..+ ...|+|||.+++..
T Consensus 117 DPP-Y~~~~~---~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 117 APP-YAMDLA---ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp CCC-TTSCTT---HHHHHHHHHTCEEEEEEEEEEE
T ss_pred ccc-cccCHH---HHHHHHHHcCCcCCCeEEEEEe
Confidence 321 111222 223333 35689999877643
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=1.1e-05 Score=65.58 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=65.3
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC--CCC-CC-CEEEecccc
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE--NVP-RG-DAIFLKWML 275 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~--~~p-~~-D~i~~~~vL 275 (370)
...+|||++||+|.++.+.+.+... +++.+|. +.+++.+++ ..++.++..|.++ ... .. |+|++.==.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 121 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred chhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence 3579999999999999998887543 7899997 777775543 2568888888876 222 23 999984321
Q ss_pred cCCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 017495 276 HGWTDEHCLKLLKNCWE--ALPENGKVIIV 303 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~--~L~pgG~lli~ 303 (370)
. ......++..+.+ .|+|+|.+++-
T Consensus 122 ~---~~~~~~~l~~l~~~~~L~~~~iIiiE 148 (183)
T d2fpoa1 122 R---RGLLEETINLLEDNGWLADEALIYVE 148 (183)
T ss_dssp S---TTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred c---cchHHHHHHHHHHCCCCCCCeEEEEE
Confidence 1 2233466666655 58999887774
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.68 E-value=7e-05 Score=62.40 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=69.9
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCC-CeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCC-CC-CEEEec
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPC-IKGISFDL-PHVLANAPSFPGVEHVGGDMFENVP-RG-DAIFLK 272 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p-~~-D~i~~~ 272 (370)
.+++.+. .....+|||.|||+|.++..+.++.+. ..++++|+ +.....++ +..+..+|++...+ .. |+|+..
T Consensus 10 ~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---~~~~~~~~~~~~~~~~~fd~ii~n 85 (223)
T d2ih2a1 10 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---WAEGILADFLLWEPGEAFDLILGN 85 (223)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---TEEEEESCGGGCCCSSCEEEEEEC
T ss_pred HHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---cceeeeeehhccccccccceeccc
Confidence 3444444 556789999999999999999887665 56899998 55443332 35677788776322 33 888775
Q ss_pred ccccCC---Ch------------------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 273 WMLHGW---TD------------------------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 273 ~vLh~~---~d------------------------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
--.... .. +-...++.++.+.|+|||++.++-+
T Consensus 86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 332110 00 0123667889999999999988654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.66 E-value=0.00018 Score=60.20 Aligned_cols=107 Identities=12% Similarity=0.013 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhC----CCC--CCCeEEeccCCCCCCC--C
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANA----PSF--PGVEHVGGDMFENVPR--G 266 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a----~~~--~rv~~~~~D~~~~~p~--~ 266 (370)
+.++.+.+- +.+..+|+|+|||.|.++..++...+..++.++++-.-.... ... +-+++...+-....+. .
T Consensus 55 l~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~ 133 (257)
T d2p41a1 55 LRWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC 133 (257)
T ss_dssp HHHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred HHHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence 445656654 777889999999999999999887665666666651111100 011 2244554444433333 3
Q ss_pred CEEEecccccCCChhH-----HHHHHHHHHHhCCCCcEEEEE
Q 017495 267 DAIFLKWMLHGWTDEH-----CLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 D~i~~~~vLh~~~d~~-----~~~iL~~~~~~L~pgG~lli~ 303 (370)
|+|+|-..-+. +..+ ...+|.-+.+.|+|||.+++=
T Consensus 134 D~vlcDm~ess-~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 134 DTLLCDIGESS-PNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp SEEEECCCCCC-SSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CEEEeeCCCCC-CCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 99998754332 2221 237788888999999998773
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=2.5e-05 Score=64.54 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=69.9
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hh---HHHhCC---CCCCCeEEeccCCCCCCC--CCEEEecccccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PH---VLANAP---SFPGVEHVGGDMFENVPR--GDAIFLKWMLHG 277 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~---~~~rv~~~~~D~~~~~p~--~D~i~~~~vLh~ 277 (370)
+..+|+|||+|.|.-+.-++-.+|+.+++.+|. .. .++.+. ...+++++.....+..+. .|+|+++.+-.
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~~- 143 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFAS- 143 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSSS-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhcC-
Confidence 356999999999999999999999999999994 22 222211 125789998888873333 39988876632
Q ss_pred CChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 278 WTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 278 ~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...++.-+...++++|++++.-
T Consensus 144 -----~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 144 -----LNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -----HHHHHHHHTTSEEEEEEEEEEE
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEC
Confidence 3578899999999999999865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.59 E-value=0.00015 Score=60.89 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=67.0
Q ss_pred HHHHhhcCCCCCCeEEEEcCcccHHHHHHHhh----CCCCeEEEeeh-hhHHHhCC-CCCCCeEEeccCCCC-C----CC
Q 017495 197 KILDVYRGFDGLKVLVDVGGGIGVTLGMITSR----YPCIKGISFDL-PHVLANAP-SFPGVEHVGGDMFEN-V----PR 265 (370)
Q Consensus 197 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~-~~~rv~~~~~D~~~~-~----p~ 265 (370)
.++..+ ++.+|||||++.|..+..++.. .++.+++++|+ +....... ...++++..+|..+. . ..
T Consensus 74 eli~~~----KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~ 149 (232)
T d2bm8a1 74 DMLWEL----RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLRE 149 (232)
T ss_dssp HHHHHH----CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSS
T ss_pred HHHHHh----CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHh
Confidence 455444 3789999999999877765543 36789999997 44332222 237899999997652 1 12
Q ss_pred --CCEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 266 --GDAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 266 --~D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.|+|++-.. |.. +....-+ .....|+|||++++-|.
T Consensus 150 ~~~dlIfID~~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 150 MAHPLIFIDNA-HAN--TFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp SCSSEEEEESS-CSS--HHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred cCCCEEEEcCC-cch--HHHHHHH-HHhcccCcCCEEEEEcC
Confidence 288777544 542 2333334 36689999999998665
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.58 E-value=4.7e-05 Score=67.77 Aligned_cols=101 Identities=11% Similarity=0.062 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-----CCCeEEEeeh-hhHHHhCCC-----CCCCeEEeccCCCCCCC--CCEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-----PCIKGISFDL-PHVLANAPS-----FPGVEHVGGDMFENVPR--GDAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-----p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~D~~~~~p~--~D~i~~ 271 (370)
.....+|+|.+||+|.++..+.++. +...++++|+ +.++..++. .....+..+|.....+. .|+|++
T Consensus 115 ~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~ 194 (328)
T d2f8la1 115 KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS 194 (328)
T ss_dssp TCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred CCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence 4566899999999999999887642 4557889998 777766553 25677888888774443 399988
Q ss_pred cccccC-CChhH---------------HHHHHHHHHHhCCCCcEEEEEee
Q 017495 272 KWMLHG-WTDEH---------------CLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 272 ~~vLh~-~~d~~---------------~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.--... +.++. -..++..+.+.|+|||++.++-+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 633211 11111 12479999999999999888554
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.56 E-value=7.6e-05 Score=60.28 Aligned_cols=109 Identities=24% Similarity=0.297 Sum_probs=78.7
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC--CCCCeEEeccCCC-C-----CC-
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS--FPGVEHVGGDMFE-N-----VP- 264 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~D~~~-~-----~p- 264 (370)
+.+++..+. ..+...++|..+|.|+.+..+++. +.+++++|. |.++..++. ..++.++.+++.+ . ..
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 456676666 677889999999999999999996 568999998 888776653 3688999888865 1 11
Q ss_pred CC-CEEEecc-----cccCCChh--HHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 265 RG-DAIFLKW-----MLHGWTDE--HCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 265 ~~-D~i~~~~-----vLh~~~d~--~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
.. |.|++-. -|.+...+ .....|......|+|||+++++.+.
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh 133 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH 133 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence 22 7776632 22221111 2345789999999999999998763
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.54 E-value=4.2e-05 Score=52.21 Aligned_cols=57 Identities=14% Similarity=0.156 Sum_probs=47.4
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPIC 117 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~ 117 (370)
+.|++.+... +.|+++.|||+.+|+ ++.-+.|+|..|+..|+++++ + +++|.+++..
T Consensus 8 l~IL~~~a~~-------~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~----~----~g~y~lG~~l 64 (75)
T d1mkma1 8 FEILDFIVKN-------PGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----K----DKRYVPGYKL 64 (75)
T ss_dssp HHHHHHHHHC-------SSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----T----TSCEEECTHH
T ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----C----CCCEeecHHH
Confidence 4567777765 248999999999999 999999999999999999974 1 4679998653
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.47 E-value=5.1e-05 Score=61.46 Aligned_cols=96 Identities=17% Similarity=0.052 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCeEEeccCCCC------CCCC-CEE
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVEHVGGDMFEN------VPRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~D~~~~------~p~~-D~i 269 (370)
.-...+|||+.||+|.++.+.+.+.. .+++.+|. +.+++.++++ ++++++.+|.++. .... |+|
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlI 117 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 117 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceE
Confidence 34678999999999999999888754 37888997 7777765532 4789999998751 1122 999
Q ss_pred EecccccCCChhHHHHHHHHHHH--hCCCCcEEEEEee
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWE--ALPENGKVIIVES 305 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~--~L~pgG~lli~e~ 305 (370)
++.==.+ ......+|..+.+ .|+|+|.+++ |.
T Consensus 118 flDPPY~---~~~~~~~l~~i~~~~~L~~~giIi~-E~ 151 (182)
T d2fhpa1 118 LLDPPYA---KQEIVSQLEKMLERQLLTNEAVIVC-ET 151 (182)
T ss_dssp EECCCGG---GCCHHHHHHHHHHTTCEEEEEEEEE-EE
T ss_pred Eechhhh---hhHHHHHHHHHHHCCCCCCCEEEEE-Ec
Confidence 8742111 2234567777755 5899997764 54
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.18 E-value=0.0032 Score=55.81 Aligned_cols=149 Identities=17% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCCeEEEEcCcccHHHH-------H-HHhh--------CCCCeEEEeehhh--HHHhCC---CC---C-C--CeEEeccC
Q 017495 207 GLKVLVDVGGGIGVTLG-------M-ITSR--------YPCIKGISFDLPH--VLANAP---SF---P-G--VEHVGGDM 259 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~-------~-l~~~--------~p~~~~~~~D~p~--~~~~a~---~~---~-r--v~~~~~D~ 259 (370)
+.-+|+|+||.+|..+. . +.+. -|..++..-|+|. --...+ .. . . +..+.|.|
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSF 130 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCch
Confidence 44789999999998873 2 2221 2455666668753 111111 11 1 1 45588899
Q ss_pred CC-CCCCC--CEEEecccccCCCh-------------------------------hHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 260 FE-NVPRG--DAIFLKWMLHGWTD-------------------------------EHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 260 ~~-~~p~~--D~i~~~~vLh~~~d-------------------------------~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. -+|.. +++++++.||.++. .+...+|+.=++-|+|||++++.-.
T Consensus 131 Y~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~ 210 (359)
T d1m6ex_ 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEe
Confidence 88 67876 99999999998652 1334688888899999999999888
Q ss_pred cCCCCCCCCcc---chhhhhhhhHHhhhcCC-------------CcccCHHHHHHHHHhCC-CCcceE
Q 017495 306 ILPLVPENQAS---SHIVFEQDLFMLAQTTG-------------GRERSKKEYEALAKNSG-FSGLEI 356 (370)
Q Consensus 306 ~~~~~~~~~~~---~~~~~~~d~~~~~~~~~-------------~~~~t~~e~~~ll~~aG-f~~v~~ 356 (370)
..++....... .+......+.-|+. .| -..++.+|+++.+++.| |++.++
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~dmv~-eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 211 GRRSEDRASTECCLIWQLLAMALNQMVS-EGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHH-TTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred ccCCCCCCCCccchHHHHHHHHHHHHHH-cCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 77654222100 00000111111111 01 12358999999998877 555544
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=0.00014 Score=61.12 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=83.1
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hh---HHHhCC---CCCCCeEEeccCCC-----CCCCC-CEEEe
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PH---VLANAP---SFPGVEHVGGDMFE-----NVPRG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~---~~~rv~~~~~D~~~-----~~p~~-D~i~~ 271 (370)
++...+|+|||+|.|.-+.-++-.+|+.+++.+|. .. .++.+. ...++.++...+.+ +..+. |+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 34567999999999999999999999999999994 22 222211 12567777665543 11223 99999
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCCCCCCccchhhhhhhhHHhhhcCCCcccCHHHHHHHHHhCCC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLVPENQASSHIVFEQDLFMLAQTTGGRERSKKEYEALAKNSGF 351 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~t~~e~~~ll~~aGf 351 (370)
+.+- ....++.-+...+++||.+++.-.-.. .-..++.++.+...|+
T Consensus 148 RAva------~l~~ll~~~~~~l~~~g~~i~~KG~~~---------------------------~~El~~a~~~~~~~~~ 194 (239)
T d1xdza_ 148 RAVA------RLSVLSELCLPLVKKNGLFVALKAASA---------------------------EEELNAGKKAITTLGG 194 (239)
T ss_dssp ECCS------CHHHHHHHHGGGEEEEEEEEEEECC-C---------------------------HHHHHHHHHHHHHTTE
T ss_pred hhhh------CHHHHHHHHhhhcccCCEEEEECCCCh---------------------------HHHHHHHHHHHHHcCC
Confidence 8653 235789999999999999998553110 0113445667788888
Q ss_pred CcceEEec
Q 017495 352 SGLEIVCC 359 (370)
Q Consensus 352 ~~v~~~~~ 359 (370)
+..++...
T Consensus 195 ~~~~v~~~ 202 (239)
T d1xdza_ 195 ELENIHSF 202 (239)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 87766543
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0019 Score=55.36 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCC----C---CCCCeEEeccCCC-CCC
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAP----S---FPGVEHVGGDMFE-NVP 264 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~----~---~~rv~~~~~D~~~-~~p 264 (370)
....+++... ..+...|||||+|.|.++..|++... ++++++. +..++..+ . ..+++++.+|+.+ +.|
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~ 85 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP 85 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhh
Confidence 3556666665 66788999999999999999999865 5555554 43333222 2 2579999999998 555
Q ss_pred CCCEEEecccccCCChhHHHHHHHHHHHh
Q 017495 265 RGDAIFLKWMLHGWTDEHCLKLLKNCWEA 293 (370)
Q Consensus 265 ~~D~i~~~~vLh~~~d~~~~~iL~~~~~~ 293 (370)
..+.|+ .+.-++.+. .++.++...
T Consensus 86 ~~~~vV-~NLPY~Iss----~il~~~~~~ 109 (278)
T d1zq9a1 86 FFDTCV-ANLPYQISS----PFVFKLLLH 109 (278)
T ss_dssp CCSEEE-EECCGGGHH----HHHHHHHHC
T ss_pred hhhhhh-cchHHHHHH----HHHHHHHhh
Confidence 545544 555555443 455555443
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.85 E-value=0.00047 Score=58.45 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=60.4
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----CCCCeEEeccCCC-CCCC--
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----FPGVEHVGGDMFE-NVPR-- 265 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~D~~~-~~p~-- 265 (370)
..+.+++.+. ..+...|||||||.|.++..|++... +++++++ +..++..+. .++++++.+|+.+ +.++
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 4556777665 67788999999999999999998754 5666665 555444322 3679999999987 4322
Q ss_pred ----CCEEEecccccCCChh
Q 017495 266 ----GDAIFLKWMLHGWTDE 281 (370)
Q Consensus 266 ----~D~i~~~~vLh~~~d~ 281 (370)
.-+.+..+.=++.+.+
T Consensus 86 ~~~~~~~~vvgNlPY~Iss~ 105 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHH
T ss_pred cccCCCeEEEecchHHHHHH
Confidence 1466777777776643
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.78 E-value=0.0051 Score=53.21 Aligned_cols=97 Identities=15% Similarity=0.131 Sum_probs=74.0
Q ss_pred CCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------CCCCeEEeccCCCCCC----------CC
Q 017495 206 DGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------FPGVEHVGGDMFENVP----------RG 266 (370)
Q Consensus 206 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~D~~~~~p----------~~ 266 (370)
.+...|+.+|||-=.....+ ...++++++-+|+|++++..++ ..+..++..|+.++++ ..
T Consensus 88 ~g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ 166 (297)
T d2uyoa1 88 DGIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 166 (297)
T ss_dssp TTCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred hCCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCC
Confidence 35567888999988877766 3457889999999999874332 2346778888765321 12
Q ss_pred -CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEE
Q 017495 267 -DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIV 303 (370)
Q Consensus 267 -D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~ 303 (370)
=++++-.++++++.+++.++|+.+.+...||+.|++-
T Consensus 167 ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d 204 (297)
T d2uyoa1 167 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE 204 (297)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred CEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 4666677899999999999999999999999998764
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.70 E-value=0.0072 Score=52.98 Aligned_cols=103 Identities=12% Similarity=0.103 Sum_probs=82.5
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeehhhHHHhCCC---------------------------CCCCeEEeccC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDLPHVLANAPS---------------------------FPGVEHVGGDM 259 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------------------------~~rv~~~~~D~ 259 (370)
+...|+-+|||.=.....+...+|+++++-+|+|++++..+. .++.+++..|+
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 456899999999999989988899999999999988874321 14678899998
Q ss_pred CC-CC----------CCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCCCC
Q 017495 260 FE-NV----------PRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILPLV 310 (370)
Q Consensus 260 ~~-~~----------p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~~ 310 (370)
.+ .+ +.. -++++-.+|.+++++++.++|+.+.+..+ +|.+++.|++.+..
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~~~~ 237 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIGGSQ 237 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECCCCS
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCCCCC
Confidence 76 21 111 57888889999999999999999999885 57888999986543
|
| >d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PF1790-like domain: Transcriptional regulatory protein PF1790 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.69 E-value=0.00058 Score=55.59 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=53.0
Q ss_pred HHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 36 LKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 36 l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
|.-=.+..|+..|..+ |.|+.+||+.+|+ ++..+++.|+.|...|+|+...+....|+....|.++.
T Consensus 12 l~~~~R~~Il~~L~~~---------~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~ 78 (194)
T d2p4wa1 12 LGNETRRRILFLLTKR---------PYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKK 78 (194)
T ss_dssp HHSHHHHHHHHHHHHS---------CEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECT
T ss_pred hCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecc
Confidence 3333556667778776 8999999999999 99999999999999999986432223344455788887
Q ss_pred hhh
Q 017495 116 ICK 118 (370)
Q Consensus 116 ~~~ 118 (370)
...
T Consensus 79 ~~~ 81 (194)
T d2p4wa1 79 GLR 81 (194)
T ss_dssp TEE
T ss_pred cce
Confidence 653
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=96.66 E-value=0.00046 Score=49.44 Aligned_cols=64 Identities=14% Similarity=0.240 Sum_probs=50.7
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
++|.--.++.|+..|..+ +.++.+||+.+|+ ++..++..|+.|...|+|...+ +|+ ...|++
T Consensus 18 kaL~~p~Rl~Il~~L~~~---------~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r----~G~-~~~Y~l 79 (98)
T d1r1ta_ 18 AVLADPNRLRLLSLLARS---------ELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRK----QGR-HVYYQL 79 (98)
T ss_dssp HHHCCHHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEE
T ss_pred HHhCCHHHHHHHHHHHcC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEE
Confidence 455555677788888776 8999999999999 9999999999999999999642 232 345766
Q ss_pred ch
Q 017495 114 AP 115 (370)
Q Consensus 114 ~~ 115 (370)
+.
T Consensus 80 ~~ 81 (98)
T d1r1ta_ 80 QD 81 (98)
T ss_dssp SS
T ss_pred Ch
Confidence 53
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.00069 Score=48.67 Aligned_cols=71 Identities=14% Similarity=0.117 Sum_probs=54.0
Q ss_pred HHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 35 VLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 35 ~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
++..-.++.|+..|... ++.|+.+||+.+++ .+..+.+.|+.|...|+++..+ ...|+ ....|.+|
T Consensus 12 ~l~~p~r~~IL~~L~~~--------~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~-~~~d~-r~~~~~LT 77 (100)
T d1ub9a_ 12 ILGNPVRLGIMIFLLPR--------RKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYK-VIADR-PRTVVEIT 77 (100)
T ss_dssp HHHSHHHHHHHHHHHHH--------SEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ECSSS-CEEEEEEC
T ss_pred hcCCHHHHHHHHHhccC--------CCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEE-cCcCC-ccccccCC
Confidence 33344577788888655 38999999999999 9999999999999999998642 21222 13458999
Q ss_pred hhhhh
Q 017495 115 PICKF 119 (370)
Q Consensus 115 ~~~~~ 119 (370)
+.++.
T Consensus 78 ~~G~~ 82 (100)
T d1ub9a_ 78 DFGME 82 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88763
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.0045 Score=55.08 Aligned_cols=98 Identities=12% Similarity=0.150 Sum_probs=66.5
Q ss_pred HHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC------CCCeEEeccCCCCCC----
Q 017495 196 NKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF------PGVEHVGGDMFENVP---- 264 (370)
Q Consensus 196 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~D~~~~~p---- 264 (370)
..+.+.+. ..+..+|||+-||+|.++..|++.. .+++++|. +..++.++.+ .+++|+.+|..+..+
T Consensus 202 ~~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~ 278 (358)
T d1uwva2 202 ARALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPW 278 (358)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGG
T ss_pred HHHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhh
Confidence 34444444 5677899999999999999998854 57899997 7777776642 678999999877322
Q ss_pred --CC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 265 --RG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 265 --~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
.. |+|++. -|..-+.++++.+.+. +|.-.++|
T Consensus 279 ~~~~~d~vilD-----PPR~G~~~~~~~l~~~-~~~~ivYV 313 (358)
T d1uwva2 279 AKNGFDKVLLD-----PARAGAAGVMQQIIKL-EPIRIVYV 313 (358)
T ss_dssp GTTCCSEEEEC-----CCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred hhccCceEEeC-----CCCccHHHHHHHHHHc-CCCEEEEE
Confidence 12 888772 2222233456666554 56555555
|
| >d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Metal-sensing transcriptional repressor CzrA species: Staphylococcus aureus [TaxId: 1280]
Probab=96.58 E-value=0.00065 Score=48.21 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=51.6
Q ss_pred HHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 34 MVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 34 ~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
.+|.--.++.|+..|..+ +.++.||++.+|+ ++..+++.|+.|...|+|...+ +|+ ...|++
T Consensus 13 kaL~d~~Rl~Il~~L~~~---------~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r----~G~-~~~Y~l 74 (94)
T d1r1ua_ 13 KALGDYNRIRIMELLSVS---------EASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKR----QGQ-SMIYSL 74 (94)
T ss_dssp HHTCSHHHHHHHHHHHHC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE----ETT-EEEEEE
T ss_pred HHhCCHHHHHHHHHHHcC---------CccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEE----ECC-EEEEEE
Confidence 455556777888889886 8999999999999 9999999999999999999742 232 345777
Q ss_pred ch
Q 017495 114 AP 115 (370)
Q Consensus 114 ~~ 115 (370)
+.
T Consensus 75 ~~ 76 (94)
T d1r1ua_ 75 DD 76 (94)
T ss_dssp SS
T ss_pred Cc
Confidence 64
|
| >d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Hypothetical protein PH1932 domain: Hypothetical protein PH1932 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.42 E-value=0.00089 Score=54.19 Aligned_cols=73 Identities=12% Similarity=0.200 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccc
Q 017495 31 VLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERV 110 (370)
Q Consensus 31 ~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~ 110 (370)
-...+|..-.+..|++.|..+ |+|+.|||+.+|+ ++..+++.|+.|...|+|.........|.....
T Consensus 11 ~~~~~l~~p~R~~Il~~L~~~---------~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~ 77 (190)
T d1ulya_ 11 EVIKVMLEDTRRKILKLLRNK---------EMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKY 77 (190)
T ss_dssp HHHHHHHSHHHHHHHHHHTTC---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHHhC---------CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEE
Confidence 345677777888899999875 8999999999999 999999999999999999754211112222345
Q ss_pred eecchh
Q 017495 111 YGAAPI 116 (370)
Q Consensus 111 y~~~~~ 116 (370)
|..+..
T Consensus 78 y~~~~~ 83 (190)
T d1ulya_ 78 YGRTAD 83 (190)
T ss_dssp EEESSS
T ss_pred EEEccc
Confidence 777754
|
| >d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: Cadmium efflux system accessory protein CadC species: Staphylococcus aureus [TaxId: 1280]
Probab=96.41 E-value=0.0011 Score=48.18 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccce
Q 017495 32 LPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVY 111 (370)
Q Consensus 32 ~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y 111 (370)
...+|.--.++.|+..|... +++++.+|++.+|+ ++..+++.|+.|...|+|... .+|+ ...|
T Consensus 24 ~~kaLadp~Rl~Il~~L~~~--------~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~----r~G~-~~~Y 86 (108)
T d1u2wa1 24 ILKAIADENRAKITYALCQD--------EELCVCDIANILGV----TIANASHHLRTLYKQGVVNFR----KEGK-LALY 86 (108)
T ss_dssp HHHHHHSHHHHHHHHHHHHS--------SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC---------CCEE
T ss_pred HHHHhCCHHHHHHHHHHHhC--------CCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEE----EECC-EEEE
Confidence 34677777899999998654 28999999999999 999999999999999999974 2343 3567
Q ss_pred ecch
Q 017495 112 GAAP 115 (370)
Q Consensus 112 ~~~~ 115 (370)
+++.
T Consensus 87 ~l~~ 90 (108)
T d1u2wa1 87 SLGD 90 (108)
T ss_dssp EESC
T ss_pred EECH
Confidence 7654
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.18 E-value=0.0033 Score=57.44 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=71.9
Q ss_pred HHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhCC-------------CCeEEEeeh-hhHHHhCC--------CCCCC
Q 017495 195 MNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRYP-------------CIKGISFDL-PHVLANAP--------SFPGV 252 (370)
Q Consensus 195 ~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-------------~~~~~~~D~-p~~~~~a~--------~~~rv 252 (370)
+..++..+. .....+|+|-.||+|.++....+... .....++|. +.....++ .....
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 334444444 45678999999999999998877532 234678886 65555443 12456
Q ss_pred eEEeccCCCCCCC-C-CEEEecccccC--CC-------------hhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 253 EHVGGDMFENVPR-G-DAIFLKWMLHG--WT-------------DEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 253 ~~~~~D~~~~~p~-~-D~i~~~~vLh~--~~-------------d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.+..+|.+...+. . |+|+++==+.. +. ...-..+|..+.+.|+|||++.++-+
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 7888888874443 2 98887433211 00 11124699999999999999888644
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=95.98 E-value=0.0035 Score=41.70 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=40.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... +++|..|||+.+|+ ++..+.++++.|...|++.+
T Consensus 8 ~~~Il~~l~~~--------g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e 52 (71)
T d1z05a1 8 AGRVYKLIDQK--------GPISRIDLSKESEL----APASITKITRELIDAHLIHE 52 (71)
T ss_dssp HHHHHHHHHHH--------CSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 34578888776 48999999999999 99999999999999999985
|
| >d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Biotin repressor, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0037 Score=40.49 Aligned_cols=45 Identities=13% Similarity=0.290 Sum_probs=39.0
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++.++..|.++ ..+|.+|||+.+|+ +...+++-+..|...|+..+
T Consensus 7 ~~~iL~~L~~~--------~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~ 51 (63)
T d1biaa1 7 PLKLIALLANG--------EFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVF 51 (63)
T ss_dssp HHHHHHHHTTS--------SCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHHHHC--------CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEE
Confidence 45678888776 48999999999999 99999999999999998543
|
| >d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=95.73 E-value=0.0036 Score=40.36 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=39.1
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|+..|..+ |+|..|||+.+|+ ....+.++++.|...|++.+.
T Consensus 3 ~Il~~i~~~---------pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~ 45 (62)
T d2hoea1 3 RILKRIMKS---------PVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEE 45 (62)
T ss_dssp CSHHHHHHS---------CBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHC---------CcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC
Confidence 467888775 8999999999999 999999999999999999863
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=95.62 E-value=0.0031 Score=50.53 Aligned_cols=92 Identities=16% Similarity=0.028 Sum_probs=59.5
Q ss_pred CCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC--------CCCCeEEeccCCC--C--CCC--CCEEEec
Q 017495 208 LKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS--------FPGVEHVGGDMFE--N--VPR--GDAIFLK 272 (370)
Q Consensus 208 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~D~~~--~--~p~--~D~i~~~ 272 (370)
..+|||+-||||.++.+.+.+.. .+++.+|. +.+++..++ .....+...|..+ . ... .|+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 46999999999999999998754 37888887 665554332 1235666666543 1 112 2999883
Q ss_pred ccccCCChhHHHHHHHHHHH--hCCCCcEEEEE
Q 017495 273 WMLHGWTDEHCLKLLKNCWE--ALPENGKVIIV 303 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~--~L~pgG~lli~ 303 (370)
==- . ......+|..+.. .|+++|.+++-
T Consensus 123 PPY-~--~~~~~~~l~~l~~~~~L~~~~liiiE 152 (183)
T d2ifta1 123 PPF-H--FNLAEQAISLLCENNWLKPNALIYVE 152 (183)
T ss_dssp CCS-S--SCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhH-h--hhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence 221 1 1234567777765 68998877763
|
| >d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Mlc protein N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0075 Score=39.85 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=40.2
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... +|+|..|||+.+|+ +...+.++++.|...|+|.+
T Consensus 7 ~~~Il~~i~~~--------g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e 51 (70)
T d1z6ra1 7 AGAVYRLIDQL--------GPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQE 51 (70)
T ss_dssp HHHHHHHHHSS--------CSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEe
Confidence 34478888876 59999999999999 99999999999999999985
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.21 E-value=0.012 Score=38.20 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCc-eeccccCCCCCccccceecc
Q 017495 38 SAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDI-LRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 38 ~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~-l~~~~~~~~~g~~~~~y~~~ 114 (370)
.--...|+..|.+. ++++|+.+||+.+++ +.+-++|-+..|.+.|+ +... .+.|.+.
T Consensus 6 ~eR~~~Il~~L~~~-------~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~---------~gGY~L~ 63 (65)
T d1j5ya1 6 QERLKSIVRILERS-------KEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT---------PRGYVLA 63 (65)
T ss_dssp HHHHHHHHHHHHHC-------SSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE---------TTEEECC
T ss_pred HHHHHHHHHHHHHc-------CCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEe---------CCCEEeC
Confidence 33445677888654 247999999999999 99999999999999997 5431 3568765
|
| >d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ReutB4095-like domain: Putative DNA-binding protein ReutB4095 species: Ralstonia eutropha [TaxId: 106590]
Probab=94.92 E-value=0.018 Score=37.61 Aligned_cols=58 Identities=21% Similarity=0.150 Sum_probs=48.1
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhhc
Q 017495 57 GHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 57 ~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
.+++|-|...|+++.++ +-..|+|.|..|.+.|++...- .+|| .+.=++|+.++.++.
T Consensus 20 ~~g~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~--~edG--~G~A~Lt~~G~~lca 77 (81)
T d2obpa1 20 NGATPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSV--EADG--RGHASLTQEGAALAA 77 (81)
T ss_dssp TTCCCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE--CTTS--CEEEEECHHHHHHHH
T ss_pred CCCCCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeee--ccCC--cceeeccHHHHHHHH
Confidence 34679999999999999 9999999999999999998642 2566 577788888877664
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.91 E-value=0.063 Score=41.66 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=60.0
Q ss_pred eEEEEcCcc--cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-CCCCCCEEEecccccCCChhHHHH
Q 017495 210 VLVDVGGGI--GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-NVPRGDAIFLKWMLHGWTDEHCLK 285 (370)
Q Consensus 210 ~vLDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~~p~~D~i~~~~vLh~~~d~~~~~ 285 (370)
+|+=||||. +.++..|.+..+..+++++|. ++.++.+++...+....-+... .....|+|+++ .+.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence 577899993 445667777777889999998 7777776654334333333322 12234888875 45567789
Q ss_pred HHHHHHHhCCCCcEEEE
Q 017495 286 LLKNCWEALPENGKVII 302 (370)
Q Consensus 286 iL~~~~~~L~pgG~lli 302 (370)
+|..+...++++..+.-
T Consensus 78 vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred hhhhhhccccccccccc
Confidence 99999999999765554
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=94.88 E-value=0.0059 Score=42.13 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++|+.|...|+++.. .||+ ...|.+|+.+..+.
T Consensus 20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~----~D~R-~~~i~LT~~G~~~l 72 (85)
T d3ctaa1 20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRT----VTKR-GQILNITEKGLDVL 72 (85)
T ss_dssp EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE----EETT-EEEEEECHHHHHHH
T ss_pred CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee----cccc-cccceECHHHHHHH
Confidence 48999999999999 999999999999999999973 2332 34577888876443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.029 Score=47.91 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCC----C--CCCeEEeccCCC--C-CCCC-CEEEe--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPS----F--PGVEHVGGDMFE--N-VPRG-DAIFL-- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~--~rv~~~~~D~~~--~-~p~~-D~i~~-- 271 (370)
..+..+|||+.+|.|+=+.++++...+..++..|. +.-+...++ . ..+.....|... . .+.. |.|++
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 56678999999999999999999888888999996 433332221 1 223333333332 1 1222 77766
Q ss_pred ----cc-------cccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 272 ----KW-------MLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 272 ----~~-------vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.. +...++..+. .++|+++.+.|||||+|+-......
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 11 2222333221 4789999999999999987776553
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.03 Score=48.75 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=39.8
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHH---hCCCCCCCeEEeccCCC
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLA---NAPSFPGVEHVGGDMFE 261 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~---~a~~~~rv~~~~~D~~~ 261 (370)
...+|||||+|.|.++..|++...--++++++. +...+ .....++++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 467899999999999999998743236777764 33333 22234689999999874
|
| >d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein ywnA species: Bacillus subtilis [TaxId: 1423]
Probab=94.71 E-value=0.018 Score=42.88 Aligned_cols=34 Identities=41% Similarity=0.527 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+++|.++||+.+++ ++..++++|+.|...|+|+.
T Consensus 17 ~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s 50 (127)
T d1xd7a_ 17 EKTSSEIIADSVNT----NPVVVRRMISLLKKADILTS 50 (127)
T ss_dssp SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccc
Confidence 38999999999999 99999999999999999995
|
| >d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: MexR repressor species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.69 E-value=0.11 Score=39.02 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..+.-++..|... ++.|..+||+.+++ ++..+.+.++.|+..|+|++.+ .++|++ ...+.+|+.+.
T Consensus 36 ~~q~~vL~~l~~~--------~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~-~~~D~R-~~~l~lT~~G~ 101 (141)
T d1lnwa_ 36 PPDVHVLKLIDEQ--------RGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRER-NPSDQR-SFQLFLTDEGL 101 (141)
T ss_dssp HHHHHHHHHHHSS--------TTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-CSSSSS-SEEEEECHHHH
T ss_pred HHHHHHHHHHHHC--------CCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeec-cCCCCc-chhhccCHHHH
Confidence 3455566777665 37999999999999 9999999999999999999753 334432 34467777776
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 102 ~~~ 104 (141)
T d1lnwa_ 102 AIH 104 (141)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator TM0816 species: Thermotoga maritima [TaxId: 2336]
Probab=94.45 E-value=0.034 Score=41.84 Aligned_cols=68 Identities=12% Similarity=0.013 Sum_probs=52.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+.-++..|... ++.|+.+||+.+++ ++..+.+.++.|+..|+|++.. ++.|++ .....+|+.++.
T Consensus 33 ~q~~iL~~l~~~--------~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~ 98 (140)
T d2etha1 33 TELYAFLYVALF--------GPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREM-DPVDRR-TYRVVLTEKGKE 98 (140)
T ss_dssp HHHHHHHHHHHH--------CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEE-CTTTSS-CEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeee-cccccc-hhhhhcCHHHHH
Confidence 455577778776 37999999999999 9999999999999999999752 223322 245778888775
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 99 ~~ 100 (140)
T d2etha1 99 IF 100 (140)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator MgrA species: Staphylococcus aureus [TaxId: 1280]
Probab=94.42 E-value=0.038 Score=41.37 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=51.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... ++.|..+||+.+++ ++..+.++++-|+..|+++..+ .++|++ .....+|+.+..
T Consensus 35 ~q~~vL~~i~~~--------~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~-~~~D~R-~~~l~lT~~G~~ 100 (136)
T d2bv6a1 35 PQFLVLTILWDE--------SPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRER-SEVDQR-EVFIHLTDKSET 100 (136)
T ss_dssp HHHHHHHHHHHS--------SEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEE-CSSSTT-CEEEEECHHHHH
T ss_pred HHHHHHHHHHcC--------CCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEee-cCCccc-chhhccCHHHHH
Confidence 455667777665 38999999999999 9999999999999999998642 333332 234677888765
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 101 ~~ 102 (136)
T d2bv6a1 101 IR 102 (136)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=94.23 E-value=0.023 Score=42.50 Aligned_cols=70 Identities=10% Similarity=0.182 Sum_probs=51.2
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++.++..|... |++++|..+||+.+++ +...+.++++.|+..|++.... ...|++ ...+.+|+.++.
T Consensus 30 ~q~~vL~~l~~~------~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~ 97 (135)
T d3broa1 30 TQMTIIDYLSRN------KNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKV-SGKDSR-QKCLKLTKKANK 97 (135)
T ss_dssp HHHHHHHHHHHT------TTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHT
T ss_pred HHHHHHHHHHHc------CCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHh-hhhhhh-hhhhcccHHHHH
Confidence 445566666654 2347999999999999 9999999999999999998642 223322 245788887764
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 98 ~~ 99 (135)
T d3broa1 98 LE 99 (135)
T ss_dssp TH
T ss_pred HH
Confidence 44
|
| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=94.21 E-value=0.019 Score=43.33 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecch
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAP 115 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~ 115 (370)
.++|.++||+.+++ ++..++++|..|...|+|... .| .+.|.+..
T Consensus 22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~-----rG--~GG~~L~~ 66 (138)
T d1ylfa1 22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVN-----RG--PGGAGLLK 66 (138)
T ss_dssp GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CCEEESS
T ss_pred CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee-----cC--CCCceecC
Confidence 47999999999999 999999999999999999863 24 25566653
|
| >d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Putative transcriptional regulator YusO species: Bacillus subtilis [TaxId: 1423]
Probab=94.10 E-value=0.1 Score=39.22 Aligned_cols=68 Identities=16% Similarity=0.159 Sum_probs=50.8
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+..++..|... +|.|+.+||+.+++ ++..+.+.++.|+..|+|+..+ .++|++ .-.+.+|+.++.+
T Consensus 37 q~~iL~~l~~~--------~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~-~~~D~R-~~~v~lT~~G~~~ 102 (143)
T d1s3ja_ 37 QLFVLASLKKH--------GSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTH-NTKDRR-VIDLSLTDEGDIK 102 (143)
T ss_dssp HHHHHHHHHHH--------SEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-SEEEEECHHHHHH
T ss_pred HHHHHHHHHHC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeee-ecCCCC-ceEEEECHHHHHH
Confidence 33467777665 37999999999999 9999999999999999998642 223322 2347788887755
Q ss_pred hc
Q 017495 121 IK 122 (370)
Q Consensus 121 ~~ 122 (370)
..
T Consensus 103 ~~ 104 (143)
T d1s3ja_ 103 FE 104 (143)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.04 E-value=0.056 Score=46.76 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhCC-CCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC-CC-CCC-CEEEe--
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRYP-CIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE-NV-PRG-DAIFL-- 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~-~~-p~~-D~i~~-- 271 (370)
..++.+|||+.+|.|.=+.+++.... +..++..|. +.-+...+. ..++.+...|... +. ... |.|++
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 45678999999999999999988765 457788886 444433322 1345555555544 21 122 76665
Q ss_pred -----------cccccCCChhHH-------HHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 272 -----------KWMLHGWTDEHC-------LKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 272 -----------~~vLh~~~d~~~-------~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
..+...+..++. .++|+++.+.+||||+|+-......
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~ 248 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE 248 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence 111222333222 3789999999999999887776553
|
| >d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal fragment of elongation factor SelB domain: C-terminal fragment of elongation factor SelB species: Moorella thermoacetica [TaxId: 1525]
Probab=94.01 E-value=0.031 Score=35.99 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|-++.|||+.+|+ ++..++.+|+.|+..|.+.+.
T Consensus 22 ~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI 56 (64)
T d1lvaa3 22 QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI 56 (64)
T ss_dssp SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES
T ss_pred CCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe
Confidence 47899999999999 999999999999999999975
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=93.80 E-value=0.052 Score=42.77 Aligned_cols=96 Identities=21% Similarity=0.117 Sum_probs=61.6
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-----------CCCCC-CEEE
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-----------NVPRG-DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-----------~~p~~-D~i~ 270 (370)
.++..+||-+|+| .|.++..+++.+...+++++|. +.-.+.+++..--.++...-.. ..+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5677899999998 5888889999875458899986 7666666544211222111000 01223 8776
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
-.- .. ...++.+.+.|+|||+++++-...+
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~~G~iv~~G~~~~ 135 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRRGGFYSVAGVAVP 135 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEEEEEEEECCCCSC
T ss_pred ecC-----Cc---hhHHHHHHHHhcCCCEEEEEeecCC
Confidence 432 11 1457888899999999998875433
|
| >d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Archaeal DNA-binding protein domain: Sso10a (SSO10449) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.78 E-value=0.045 Score=37.77 Aligned_cols=48 Identities=17% Similarity=0.158 Sum_probs=42.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.+...|...+++ +...+.+.|..|+..|+++.. +..|..|+.+..+.
T Consensus 18 g~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~---------~~~Y~iT~kG~~~L 65 (90)
T d1r7ja_ 18 GSPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE---------GKQYMLTKKGEELL 65 (90)
T ss_dssp CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE---------TTEEEECHHHHHHH
T ss_pred CCCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec---------CCEEEECccHHHHH
Confidence 3578999999999 999999999999999999853 47899999997544
|
| >d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA3067 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.64 E-value=0.054 Score=40.96 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=49.6
Q ss_pred HHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhh
Q 017495 39 AIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICK 118 (370)
Q Consensus 39 ~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~ 118 (370)
..++.++..|... ++++|..+||+.+++ ++..+.++++-|+..|+|+... .+.|.+ .-.+.+|+.++
T Consensus 34 ~~q~~vL~~L~~~-------~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~-~~~DrR-~~~i~LT~~G~ 100 (145)
T d2hr3a1 34 FSQLVVLGAIDRL-------GGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHA-DPQDGR-RTRVSLSSEGR 100 (145)
T ss_dssp HHHHHHHHHHHHT-------TSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC--------CCEEEECHHHH
T ss_pred HHHHHHHHHHHHc-------CCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeee-Cccchh-HHHhccCHHHH
Confidence 3455666677543 137999999999999 9999999999999999998642 222221 24477788777
Q ss_pred hhh
Q 017495 119 FLI 121 (370)
Q Consensus 119 ~l~ 121 (370)
.+.
T Consensus 101 ~~~ 103 (145)
T d2hr3a1 101 RNL 103 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Pleiotropic regulator of virulence genes, SarA species: Staphylococcus aureus [TaxId: 1280]
Probab=93.49 E-value=0.028 Score=40.90 Aligned_cols=68 Identities=13% Similarity=0.073 Sum_probs=49.0
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.++..|... +++++|..+||+.+++ ++..+.++++.|...|++...+ +++|++ .-...+|+.++...
T Consensus 36 ~~vL~~l~~~------~~~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~ 103 (115)
T d2frha1 36 FAVLTYISEN------KEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKR-NEHDER-TVLILVNAQQRKKI 103 (115)
T ss_dssp HHHHHHHHHT------CCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBC-CSSSSC-CCEEECCSHHHHHH
T ss_pred HHHHHHHHcC------CCCCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeee-cccCCc-eEEEEECHHHHHHH
Confidence 3445556543 2347899999999999 9999999999999999999752 334332 24466788776443
|
| >d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtcD species: Bacillus subtilis [TaxId: 1423]
Probab=93.46 E-value=0.06 Score=37.61 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=43.0
Q ss_pred CCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+....||.+.+ |+ ++..|.+=|+.|...|+|++... ...+..-.|++|+.+..|.
T Consensus 24 ~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~--~~~p~~veY~LT~~G~~L~ 79 (95)
T d2hzta1 24 KKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVY--NQVPPKVEYELSEYGRSLE 79 (95)
T ss_dssp CBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEE--CSSSCEEEEEECTTGGGGH
T ss_pred CCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheec--cccccchhhhhhhhHHHHH
Confidence 79999999998 99 99999999999999999996421 1111134599998887655
|
| >d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical transcriptional regulator ST1889 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=93.39 E-value=0.019 Score=41.36 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+|+|+.+||+.+++ ++..+.+.|+.|...|+|.+.
T Consensus 35 ~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~ 69 (109)
T d2d1ha1 35 KPITSEELADIFKL----SKTTVENSLKKLIELGLVVRT 69 (109)
T ss_dssp SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEe
Confidence 48999999999999 999999999999999999864
|
| >d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator TM0710 species: Thermotoga maritima [TaxId: 2336]
Probab=93.35 E-value=0.031 Score=42.06 Aligned_cols=68 Identities=9% Similarity=0.060 Sum_probs=50.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+.-++..|... ++.|+.+||+.+++ ++..+.+.++-|+..|+++... .++|++ .-.+.+|+.+..+
T Consensus 32 q~~iL~~i~~~--------~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~-~~~D~R-~~~i~LT~~G~~~ 97 (139)
T d2a61a1 32 QFDILQKIYFE--------GPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTP-DPADRR-AYFLVITRKGEEV 97 (139)
T ss_dssp HHHHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHHH
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeee-ccCCCC-eEEEEECHHHHHH
Confidence 34455566554 37999999999999 9999999999999999998642 222221 2457788888765
Q ss_pred hc
Q 017495 121 IK 122 (370)
Q Consensus 121 ~~ 122 (370)
..
T Consensus 98 ~~ 99 (139)
T d2a61a1 98 IE 99 (139)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Transcriptional regulator LrpC species: Bacillus subtilis [TaxId: 1423]
Probab=93.32 E-value=0.038 Score=35.40 Aligned_cols=46 Identities=22% Similarity=0.410 Sum_probs=40.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|++.|... +..|..+||+.+|+ ++..+.+-++.|...|++..
T Consensus 6 ~D~~IL~~L~~n--------~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~ 51 (63)
T d2cfxa1 6 IDLNIIEELKKD--------SRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQ 51 (63)
T ss_dssp HHHHHHHHHHHC--------SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeee
Confidence 355678888876 48999999999999 99999999999999999983
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.31 E-value=0.15 Score=39.74 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=62.6
Q ss_pred HHhhcCCCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC-------CCCC-CE
Q 017495 199 LDVYRGFDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN-------VPRG-DA 268 (370)
Q Consensus 199 ~~~~~~~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~-------~p~~-D~ 268 (370)
.+... .++..+||=+||| .|.++..+++......+++.|. +.-++.+++..-..++..+-.+. .+.+ |+
T Consensus 21 ~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 21 INALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp HTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 33344 6678899999998 5567778888877777788886 66666665543233333221111 1223 77
Q ss_pred EEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 269 IFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 269 i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
|+-+-- . ...++.+.+.++|+|+++++-.
T Consensus 100 vid~~G-----~---~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALESTG-----S---PEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECSC-----C---HHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcCC-----c---HHHHHHHHhcccCceEEEEEee
Confidence 664321 1 3567889999999999998754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.24 E-value=0.03 Score=49.79 Aligned_cols=92 Identities=12% Similarity=0.043 Sum_probs=66.0
Q ss_pred CCCeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC---------------------CCCeEEeccCCC---
Q 017495 207 GLKVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF---------------------PGVEHVGGDMFE--- 261 (370)
Q Consensus 207 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------------------~rv~~~~~D~~~--- 261 (370)
++.+|||..||+|..+.+.+...+..+++..|+ +..++.++++ ..+.+...|...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 367999999999999999888777778899998 8887766532 123444455432
Q ss_pred CCCCC-CEEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEe
Q 017495 262 NVPRG-DAIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVE 304 (370)
Q Consensus 262 ~~p~~-D~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e 304 (370)
...+. |+|.+-- +..+ ..+|..+.++++.||.|.+.-
T Consensus 125 ~~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 125 ERHRYFHFIDLDP----FGSP--MEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp HSTTCEEEEEECC----SSCC--HHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcCcCCcccCCC----CCCc--HHHHHHHHHHhccCCEEEEEe
Confidence 12233 8887753 2222 578999999999999999853
|
| >d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Multiple antibiotic resistance repressor, MarR species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.046 Score=41.02 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=51.3
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... ++.|..+||+.+++ ++..+.+++..|+..|+|+..+ ++.|++ ...+.+|+.++.
T Consensus 35 ~q~~vL~~l~~~--------~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~ 100 (138)
T d1jgsa_ 35 AQFKVLCSIRCA--------ACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLP-NPNDKR-GVLVKLTTGGAA 100 (138)
T ss_dssp HHHHHHHHHHHH--------SSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CTTCSS-CEEEEECHHHHH
T ss_pred HHHHHHHhHHhC--------cCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEee-ccCCCC-eeEEEECHHHHH
Confidence 445556666655 37999999999999 9999999999999999998642 223332 245788888875
Q ss_pred hh
Q 017495 120 LI 121 (370)
Q Consensus 120 l~ 121 (370)
+.
T Consensus 101 ~~ 102 (138)
T d1jgsa_ 101 IC 102 (138)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.11 E-value=0.071 Score=42.61 Aligned_cols=104 Identities=17% Similarity=0.043 Sum_probs=66.9
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC---------CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN---------VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~---------~p~~-D~i~~~ 272 (370)
.++..+||-+|||. |..+..+++.....++++.|. +.-++.+++.. .+.+.....++ .+.+ |+++-.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G-a~~~~~~~~~~~~~~i~~~t~g~g~D~vid~ 101 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEVDCAVDA 101 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc-ccEEEeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence 77888999999997 677788888888778999997 77777776542 22221111111 1223 887743
Q ss_pred ccc------cC-CChhHHHHHHHHHHHhCCCCcEEEEEeecCCC
Q 017495 273 WML------HG-WTDEHCLKLLKNCWEALPENGKVIIVESILPL 309 (370)
Q Consensus 273 ~vL------h~-~~d~~~~~iL~~~~~~L~pgG~lli~e~~~~~ 309 (370)
--. |+ .........|+.+.++++|||++.++-...++
T Consensus 102 vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~ 145 (195)
T d1kola2 102 VGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTE 145 (195)
T ss_dssp CCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSC
T ss_pred ccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCC
Confidence 221 10 00011236799999999999999998754433
|
| >d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Manganese transport regulator MntR species: Bacillus subtilis [TaxId: 1423]
Probab=93.07 E-value=0.051 Score=34.52 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++++..+||+.+|+ .+.-+..+++-|...|++..
T Consensus 20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~ 53 (61)
T d2ev0a1 20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIY 53 (61)
T ss_dssp SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC
T ss_pred CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 38999999999999 99999999999999999996
|
| >d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Regulatory protein AsnC species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.034 Score=35.65 Aligned_cols=46 Identities=7% Similarity=0.187 Sum_probs=40.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
.+..|+..|... +..|..+||+++|+ ++..+.+=++.|.+.|++..
T Consensus 6 ~D~~IL~~L~~~--------~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~ 51 (63)
T d2cg4a1 6 LDRGILEALMGN--------ARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITG 51 (63)
T ss_dssp HHHHHHHHHHHC--------TTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 355678888876 48999999999999 99999999999999999984
|
| >d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: TrmB-like domain: Hypothetical protein AF2008 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.95 E-value=0.033 Score=40.08 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=37.5
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.++..|... ++.|+.+||+.+|+ +...+.+.|+.|...|++.+.
T Consensus 24 ~v~~~L~~~--------g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~ 67 (109)
T d1sfxa_ 24 RIYSLLLER--------GGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE 67 (109)
T ss_dssp HHHHHHHHH--------CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHhc--------CCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence 355556554 38999999999999 999999999999999999863
|
| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: Putative transcriptional regulator PH1519 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.89 E-value=0.033 Score=35.30 Aligned_cols=46 Identities=13% Similarity=0.157 Sum_probs=40.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++..|+..|... +..|..+||+++|+ ++..+.+-++.|...|++..
T Consensus 4 ~D~~Il~~L~~n--------~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d2cyya1 4 IDKKIIKILQND--------GKAPLREISKITGL----AESTIHERIRKLRESGVIKK 49 (60)
T ss_dssp HHHHHHHHHHHC--------TTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 456788888876 48999999999999 99999999999999999983
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.41 Score=36.75 Aligned_cols=95 Identities=12% Similarity=-0.000 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC----------CCCC-CEEEe
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN----------VPRG-DAIFL 271 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~----------~p~~-D~i~~ 271 (370)
.++..+|+=+|+| .|.++..+++.....++++.|. +.-++.+++..--.+...+-.+. .+.+ |+|+-
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid 103 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE 103 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEe
Confidence 6677899999998 5666667777776568999997 77777766542222222221111 1223 88765
Q ss_pred cccccCCChhHHHHHHHHHHHhCCCCcEEEEEeecC
Q 017495 272 KWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESIL 307 (370)
Q Consensus 272 ~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~~ 307 (370)
.-- . ...++.+.+.++|||++++.-...
T Consensus 104 ~~G-----~---~~~~~~a~~~~~~gG~iv~~G~~~ 131 (171)
T d1pl8a2 104 CTG-----A---EASIQAGIYATRSGGTLVLVGLGS 131 (171)
T ss_dssp CSC-----C---HHHHHHHHHHSCTTCEEEECSCCC
T ss_pred ccC-----C---chhHHHHHHHhcCCCEEEEEecCC
Confidence 322 1 356889999999999999987543
|
| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Lrp/AsnC-like transcriptional regulator N-terminal domain domain: LprA species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.76 E-value=0.032 Score=35.37 Aligned_cols=45 Identities=13% Similarity=0.211 Sum_probs=39.6
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+..|+..|... +..|..+||+++|+ ++..+.+-++.|...|++..
T Consensus 5 D~kIl~~L~~n--------~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~ 49 (60)
T d1i1ga1 5 DKIILEILEKD--------ARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEG 49 (60)
T ss_dssp HHHHHHHHHHC--------TTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHc--------CCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEe
Confidence 45677788776 48999999999999 99999999999999999973
|
| >d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Probable transcriptional regulator PA4135 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.50 E-value=0.034 Score=41.66 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=50.5
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.+..++..|... ++.+..+||+.+++ ++..+.++++-|+..|+|+... +++|++ .-...+|+.+..
T Consensus 31 ~q~~vL~~l~~~--------~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~-~~~D~R-~~~l~lT~~G~~ 96 (136)
T d2fbia1 31 QQWRVIRILRQQ--------GEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWK-APKDQR-RVYVNLTEKGQQ 96 (136)
T ss_dssp HHHHHHHHHHHH--------CSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEE-ETTEEE-EEEEEECHHHHH
T ss_pred HHHHHHHHHHHc--------CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEee-cCccCc-hhhhccCHHHHH
Confidence 344556667665 38999999999999 9999999999999999999642 223221 233677887765
Q ss_pred hhc
Q 017495 120 LIK 122 (370)
Q Consensus 120 l~~ 122 (370)
+..
T Consensus 97 ~~~ 99 (136)
T d2fbia1 97 CFV 99 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PG0823 species: Porphyromonas gingivalis [TaxId: 837]
Probab=92.26 E-value=0.072 Score=37.70 Aligned_cols=79 Identities=8% Similarity=0.122 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+....++++.+-|...+|+. |..+ +....||.+.+ |+ ++..|.+=|+.|++.|+|.+
T Consensus 9 pv~~~l~ilg~kW~l~Il~~---------L~~g---------~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r 66 (102)
T d2fswa1 9 PVRKSMQIFAGKWTLLIIFQ---------INRR---------IIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKK 66 (102)
T ss_dssp HHHHHHHHHTSSSHHHHHHH---------HTTS---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHcCCCHHHHHHH---------HccC---------CCCHHHHHhhCccc----chhHHHHHHHHHHHCCceee
Confidence 56777888888777766544 3444 78999999997 89 99999999999999999986
Q ss_pred cccCCCCCccccceecchhhhhhh
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.. . ...+..-.|.+|+.+..|.
T Consensus 67 ~~-~-~~~p~~veY~LT~~G~~L~ 88 (102)
T d2fswa1 67 KQ-Y-PEVPPRVEYSLTPLGEKVL 88 (102)
T ss_dssp EE-E-CSSSCEEEEEECHHHHTTH
T ss_pred cc-c-CCCCCeehhhhhHhHHHHH
Confidence 42 1 1112234599999887655
|
| >d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein PA1607 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.16 E-value=0.1 Score=39.35 Aligned_cols=76 Identities=12% Similarity=0.106 Sum_probs=55.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecccc
Q 017495 21 KLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQ 100 (370)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~ 100 (370)
...++++..-|...+|+.+ ..| +....||.+.+|+ ++..|.+-|+.|...|+|++..
T Consensus 11 ~~~l~ilg~kW~l~Il~~l---------~~G---------~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~- 67 (142)
T d2f2ea1 11 ARPLDVIGDGWSMLIVRDA---------FEG---------LTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVP- 67 (142)
T ss_dssp TTTHHHHCSSSHHHHHHHH---------HTT---------CCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEE-
T ss_pred HHHHHHHcCCCHHHHHHHH---------HcC---------CCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeec-
Confidence 3445566666666665543 344 7999999999999 9999999999999999998632
Q ss_pred CCCCCccccceecchhhhhhh
Q 017495 101 NGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 101 ~~~~g~~~~~y~~~~~~~~l~ 121 (370)
.+. +....|.+|+.+..|.
T Consensus 68 -~~~-p~r~~Y~LT~~G~~L~ 86 (142)
T d2f2ea1 68 -AES-GSHQEYRLTDKGRALF 86 (142)
T ss_dssp -CSS-SSCEEEEECHHHHTTH
T ss_pred -CCC-CCeeEEecCcCcchHH
Confidence 111 1135699999887655
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.12 Score=48.04 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=65.1
Q ss_pred HHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC----CC--------------CeEEEeeh-hhHHHhCCC------
Q 017495 194 VMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY----PC--------------IKGISFDL-PHVLANAPS------ 248 (370)
Q Consensus 194 ~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~----p~--------------~~~~~~D~-p~~~~~a~~------ 248 (370)
++..++..+. .....+|+|-.||+|.++....+.. .. ...+++|. +.+...++.
T Consensus 152 Iv~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~ 230 (524)
T d2ar0a1 152 LIKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHD 230 (524)
T ss_dssp HHHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTT
T ss_pred hhHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhc
Confidence 3444455454 4456799999999999998765542 11 24678887 655544331
Q ss_pred C-----CCCeEEeccCCC-C---CCCCCEEEeccccc--C-----------CChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 249 F-----PGVEHVGGDMFE-N---VPRGDAIFLKWMLH--G-----------WTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 249 ~-----~rv~~~~~D~~~-~---~p~~D~i~~~~vLh--~-----------~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. ..-.+..++.+. + .+..|+|+++==+- . -... -..++..+.+.|+|||++.++-+
T Consensus 231 ~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~-~~~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 231 IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccc-cHHHHHHHHHhccccCcEEEEEe
Confidence 0 122344555554 1 11238877632110 0 0111 24689999999999999998654
|
| >d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator PA3341 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.72 E-value=0.3 Score=36.04 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|..+||+.+++ ++..+.++++.|+..|+|+... +++|++ .-...+|+.++.+.
T Consensus 43 ~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~-~~~D~R-~~~i~lT~~G~~~~ 97 (137)
T d2fbha1 43 SPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLA-VAEDRR-AKHIVLTPKADVLI 97 (137)
T ss_dssp CCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-CBTTBC-SCEEEECTTHHHHH
T ss_pred CCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccC-CCCCCC-chhhhcCHHHHHHH
Confidence 5899999999999 9999999999999999999742 223322 13456677666444
|
| >d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Hypothetical protein EF0647 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.70 E-value=0.11 Score=37.02 Aligned_cols=82 Identities=11% Similarity=0.012 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCce
Q 017495 17 EEIGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDIL 95 (370)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l 95 (370)
.-+++..++++.+-|...+|. .|..+ +....||.+.+ |+ ++..|.+=|+.|...|+|
T Consensus 6 ~c~i~~al~iig~kW~~~Il~---------~L~~g---------~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv 63 (108)
T d1z7ua1 6 QTSINLALSTINGKWKLSLMD---------ELFQG---------TKRNGELMRALDGI----TQRVLTDRLREMEKDGLV 63 (108)
T ss_dssp HHHHHHHHHTTCSTTHHHHHH---------HHHHS---------CBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSE
T ss_pred CCcHHHHHHHHcCCCHHHHHH---------HHHcC---------CCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcc
Confidence 346677777777777766554 34455 78999999998 79 999999999999999999
Q ss_pred eccccCCCCCccccceecchhhhhhhc
Q 017495 96 RCSLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 96 ~~~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
.+.. . ...+..-.|.+|+.++.|..
T Consensus 64 ~R~~-~-~~~p~~veY~LT~~G~~L~p 88 (108)
T d1z7ua1 64 HRES-F-NELPPRVEYTLTPEGYALYD 88 (108)
T ss_dssp EEEE-E-CCSSCEEEEEECHHHHHHHH
T ss_pred eeec-c-CCCcceehhhhchhHHHHHH
Confidence 8632 1 11111345999999886664
|
| >d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: HxlR-like domain: Putative transcriptional regulator YtfH species: Salmonella typhimurium [TaxId: 90371]
Probab=91.65 E-value=0.079 Score=38.32 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhcChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceec
Q 017495 19 IGKLAVRLANAAVLPMVLKSAIELNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
+...+++++.+-|...+|.. |..+ +....||.+.+ |+ ++..|.+=|+.|+..|+|.+
T Consensus 13 pv~~~l~~ig~kW~l~Il~~---------L~~g---------~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R 70 (114)
T d1yyva1 13 PSREVLKHVTSRWGVLILVA---------LRDG---------THRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNR 70 (114)
T ss_dssp THHHHHHHHHSHHHHHHHHH---------GGGC---------CEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEE
T ss_pred CHHHHHHHHcCCCHHHHHHH---------HhcC---------CCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhh
Confidence 56778888888887776654 3444 78999999999 79 99999999999999999996
Q ss_pred cccCCCCCccccceecchhhhhhhc
Q 017495 98 SLQNGDNGQVERVYGAAPICKFLIK 122 (370)
Q Consensus 98 ~~~~~~~g~~~~~y~~~~~~~~l~~ 122 (370)
.. . ...+..-.|.+|+.++.|..
T Consensus 71 ~~-~-~~~p~~veY~LT~~G~~L~~ 93 (114)
T d1yyva1 71 VS-Y-PVVPPHVEYSLTPLGEQVSD 93 (114)
T ss_dssp EE-E-CSSSCEEEEEECHHHHHHHH
T ss_pred cc-c-CCCCchhHhHhhHhHHHHHH
Confidence 42 1 11112355999999886663
|
| >d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=91.35 E-value=0.11 Score=38.27 Aligned_cols=69 Identities=10% Similarity=0.000 Sum_probs=48.8
Q ss_pred HhcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhh
Q 017495 40 IELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKF 119 (370)
Q Consensus 40 ~~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~ 119 (370)
.++-++..|... +++++|..+||+.+++ .+..+.+.++.|...|+|+... ..+|.+ .-...+|+.++.
T Consensus 35 ~q~~iL~~l~~~------~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~-~~~D~R-~~~i~lT~~G~~ 102 (125)
T d1p4xa1 35 KEFILLTYLFHQ------QENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVR-SKIDER-NTYISISEEQRE 102 (125)
T ss_dssp HHHHHHHHHHSC------SCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEE-CSSSTT-SEEEECCHHHHH
T ss_pred HHHHHHHHHHHh------ccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeec-ccCCCC-eEEEEECHHHHH
Confidence 344556666543 2347999999999999 9999999999999999999752 223221 233566777654
Q ss_pred h
Q 017495 120 L 120 (370)
Q Consensus 120 l 120 (370)
.
T Consensus 103 ~ 103 (125)
T d1p4xa1 103 K 103 (125)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Enterococcus faecalis [TaxId: 1351]
Probab=91.32 E-value=0.11 Score=39.02 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=43.0
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
++|..+||+.+++ ++..+.+.++.|+..|+++... .++|++ .-...+|+.+..+.
T Consensus 43 ~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~-~~~D~R-~~~l~LT~~G~~~~ 97 (144)
T d1lj9a_ 43 GIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQE-DASNKK-IKRIYATEKGKNVY 97 (144)
T ss_dssp TEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE-CSSCTT-CEEEEECHHHHHHH
T ss_pred CCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccC-CCCCCC-ccccccCHHHHHHH
Confidence 7999999999999 9999999999999999999752 233332 23466777776544
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.22 E-value=0.22 Score=38.11 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=58.2
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC------CCCC-CEEEecccc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN------VPRG-DAIFLKWML 275 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~------~p~~-D~i~~~~vL 275 (370)
.++..+||=+|+| .|..+..+++.. +.+++.+|. +.-++.+++..-..++..+-.+. ...+ |.++....
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~- 102 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAV- 102 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCS-
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccc-
Confidence 6677888889988 677777888876 479999997 66666666543223332221111 0112 33333211
Q ss_pred cCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 276 HGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 276 h~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. ...++.+.+.|+|||+++++-.
T Consensus 103 ---~----~~~~~~~~~~l~~~G~iv~~G~ 125 (166)
T d1llua2 103 ---S----NSAFGQAIGMARRGGTIALVGL 125 (166)
T ss_dssp ---C----HHHHHHHHTTEEEEEEEEECCC
T ss_pred ---c----chHHHHHHHHhcCCcEEEEEEe
Confidence 1 2457888999999999998753
|
| >d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator DR1159 species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.13 E-value=0.066 Score=41.87 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=46.5
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+.|+..|... |+..++|..+||+.+++ ++..+.++++.|+..|+|+... ++.|++ .-...+|+.++.+.
T Consensus 65 ~~vL~~L~~~-----~~~~~lt~~eLa~~l~i----~~~tvsr~l~~Le~~GlV~r~~-~~~DrR-~~~i~LT~~G~~l~ 133 (172)
T d2fbka1 65 WDLLLTLYRS-----APPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERRE-DERDRR-SASIRLTPQGRALV 133 (172)
T ss_dssp HHHHHHHHHH-----CCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC---------CCBEECHHHHHHH
T ss_pred HHHHHHHHhh-----CCCCCcCHHHHHHHHCc----CHhHHHHHHHHHHhCCCeeeec-cccchh-hHHhhcCHHHHHHH
Confidence 3445555543 33335999999999999 9999999999999999999742 222221 23356777776554
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=91.09 E-value=0.69 Score=35.72 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC---------CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN---------VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~---------~p~~-D~i~~~ 272 (370)
.++..+||=+|||. |.++..+++.....++++.|. +.-.+.+++..-..++...-.+. .+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66778999999995 889999999887678888897 66666666543223322111111 1223 887643
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCC-cEEEEEee
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPEN-GKVIIVES 305 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pg-G~lli~e~ 305 (370)
-- . ...+....+.++|| |+++++-.
T Consensus 106 ~G-----~---~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 106 AG-----T---AQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECCC
T ss_pred cc-----c---chHHHHHHHHhhcCCeEEEecCC
Confidence 22 1 35688999999996 99999764
|
| >d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Organic hydroperoxide resistance transcriptional regulator OhrR species: Bacillus subtilis [TaxId: 1423]
Probab=91.04 E-value=0.11 Score=38.62 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=49.8
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
..++..|... +++|..+||+.+++ ++..+.+.++.|+..|+|...+ .+.|++ .-...+|+.+..+.
T Consensus 36 ~~vL~~l~~~--------~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~-~~~D~R-~~~i~lT~~G~~~~ 101 (137)
T d1z91a1 36 YLALLLLWEH--------ETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKR-SEEDER-SVLISLTEDGALLK 101 (137)
T ss_dssp HHHHHHHHHH--------SEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCB-CSSCTT-SBEEEECHHHHSGG
T ss_pred HHHHHHHHcC--------CCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEee-cCCCCC-eEEEEECHHHHHHH
Confidence 3445666554 37999999999999 9999999999999999999742 223321 23467888887555
Q ss_pred c
Q 017495 122 K 122 (370)
Q Consensus 122 ~ 122 (370)
.
T Consensus 102 ~ 102 (137)
T d1z91a1 102 E 102 (137)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Iron-dependent repressor protein domain: Iron-dependent regulator IdeR species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.99 E-value=0.14 Score=32.63 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++++..+||+.+|+ .+.-+.++++-|...|+|..
T Consensus 22 ~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~ 55 (63)
T d2isya1 22 VTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRV 55 (63)
T ss_dssp CCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEE
Confidence 47999999999999 99999999999999999996
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.97 E-value=1.1 Score=34.05 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=61.1
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-C-----------CCCC-CEE
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-N-----------VPRG-DAI 269 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~-----------~p~~-D~i 269 (370)
.++..+||-+||| .|.++..+++.. +.+++++|. +.-++.+++..--.....+-.. + .+.+ |+|
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 6677899999988 777888888775 579999997 6666666543221222222211 1 1233 877
Q ss_pred EecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 270 FLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 270 ~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+-.-- . ...+..+.+.++|+|++++.-..
T Consensus 103 id~~g-----~---~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 103 IDCSG-----N---EKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp EECSC-----C---HHHHHHHHHHSCTTCEEEECSCC
T ss_pred eecCC-----C---hHHHHHHHHHHhcCCceEEEecC
Confidence 64321 1 25678888999999999997743
|
| >d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator SlyA species: Salmonella typhimurium [TaxId: 90371]
Probab=90.85 E-value=0.12 Score=38.69 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=47.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+.-++..|... + ++.|..+||+.+++ +...+.+.++.|+..|+|+... +++|++ ...+.+|+.++.+
T Consensus 33 ~~~~L~~l~~~-----~--~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~-~~~D~R-~~~l~lT~~G~~~ 99 (140)
T d3deua1 33 HWVTLHNIHQL-----P--PDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQT-CASDRR-AKRIKLTEKAEPL 99 (140)
T ss_dssp HHHHHHHHHHS-----C--SSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC----------CEEEECGGGHHH
T ss_pred HHHHHHHHHHc-----C--CCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecc-cCCCCC-ceeeEECHHHHHH
Confidence 33455556543 1 26999999999999 9999999999999999998642 223322 2357788877655
Q ss_pred hc
Q 017495 121 IK 122 (370)
Q Consensus 121 ~~ 122 (370)
..
T Consensus 100 ~~ 101 (140)
T d3deua1 100 IA 101 (140)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.78 E-value=0.12 Score=40.01 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=57.8
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEec-cCCC---CCCCC-CEEEeccc-cc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGG-DMFE---NVPRG-DAIFLKWM-LH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~-D~~~---~~p~~-D~i~~~~v-Lh 276 (370)
.++..+||-+|+| .|.++..+++.+ +.+++++|. +.-++.+++..--.++.. +-.+ ..... |+++-.-. .+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6678899999998 778888888765 679999996 665666554321122221 1111 12233 77665322 11
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
.. .+..+.+.|+|+|+++++-.
T Consensus 104 ~~-------~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp TC-------CTTTGGGGEEEEEEEEECCC
T ss_pred cc-------hHHHHHHHhhccceEEEecc
Confidence 11 14456789999999999764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=90.66 E-value=0.5 Score=36.30 Aligned_cols=93 Identities=17% Similarity=0.043 Sum_probs=59.8
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-------CCCCC-CEEEeccc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-------NVPRG-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-------~~p~~-D~i~~~~v 274 (370)
.++..+||=+|+| .|..+..+++.+...++++.|. +.-.+.+++.....++..+-.. ..+.+ |+|+-...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g 109 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVG 109 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecC
Confidence 4567889999998 4566677887777778888887 6656666554333343322110 01223 77664322
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. ...++...+.++|||+++++-.
T Consensus 110 -----~---~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 110 -----S---QATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp -----C---HHHHHHGGGGEEEEEEEEECCC
T ss_pred -----c---chHHHHHHHHHhCCCEEEEEeC
Confidence 1 2468888999999999999763
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.65 E-value=0.56 Score=35.67 Aligned_cols=85 Identities=18% Similarity=0.040 Sum_probs=54.5
Q ss_pred eEEEEcCc--ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCCCCCCEEEecccccCCChhHHHHH
Q 017495 210 VLVDVGGG--IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENVPRGDAIFLKWMLHGWTDEHCLKL 286 (370)
Q Consensus 210 ~vLDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~p~~D~i~~~~vLh~~~d~~~~~i 286 (370)
+|.=||+| -+.++..|.+ .+.+++++|. ++..+.+.+...+... .+..+.....|+|+++ .|+.....+
T Consensus 2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~~~~~~~a~~~~~~~~~-~~~~~~~~~~DiIila-----vp~~~~~~v 73 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQQSTCEKAVERQLVDEA-GQDLSLLQTAKIIFLC-----TPIQLILPT 73 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHHHHHHHHHTTSCSEE-ESCGGGGTTCSEEEEC-----SCHHHHHHH
T ss_pred EEEEEeecHHHHHHHHHHHH--CCCEEEEEECCchHHHHHHHhhcccee-eeeccccccccccccc-----CcHhhhhhh
Confidence 56678887 3344555554 4678899998 7776665543323222 2222233445998874 356778899
Q ss_pred HHHHHHhCCCCcEEEE
Q 017495 287 LKNCWEALPENGKVII 302 (370)
Q Consensus 287 L~~~~~~L~pgG~lli 302 (370)
++++...++|+..++-
T Consensus 74 l~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 74 LEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHGGGSCTTCEEEE
T ss_pred hhhhhhhcccccceee
Confidence 9999999998876654
|
| >d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarR species: Staphylococcus aureus [TaxId: 1280]
Probab=90.56 E-value=0.093 Score=37.96 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhhh
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFLI 121 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l~ 121 (370)
+++|..+||+.+++ ++..+.++++.|+..|+|.+.. ..+|++ .-...+|+.++.+.
T Consensus 47 ~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~-~~~D~R-~~~i~LT~~G~~~~ 102 (115)
T d1hsja1 47 NEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKR-SLQDER-TVIVYVTDTQKANI 102 (115)
T ss_dssp SEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEE-CCSSSS-CCEEECCSSHHHHH
T ss_pred CCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEe-ecCCCc-eEEEEECHHHHHHH
Confidence 47999999999999 9999999999999999999742 223332 23355676665433
|
| >d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Staphylococcal accessory regulator A homolog, SarS species: Staphylococcus aureus [TaxId: 1280]
Probab=90.32 E-value=0.13 Score=37.83 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=48.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+.-++..|... ++++++..+||+.+++ +...+.+.++-|+..|+|++.. .++|.+ .-...+|+.++.+
T Consensus 35 q~~vL~~l~~~------~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~-~~~D~R-~v~i~LT~~G~~~ 102 (125)
T d1p4xa2 35 EFTILAIITSQ------NKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKER-STEDER-KILIHMDDAQQDH 102 (125)
T ss_dssp HHHHHHHHHTT------TTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEE-CSSSTT-CEEEECCHHHHHH
T ss_pred HHHHHHHHHHc------cCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeee-cCCCCC-eEEEEECHHHHHH
Confidence 44456666543 1247899999999999 9999999999999999998642 233322 2336677777644
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 103 ~ 103 (125)
T d1p4xa2 103 A 103 (125)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.22 E-value=0.37 Score=36.94 Aligned_cols=98 Identities=22% Similarity=0.212 Sum_probs=61.5
Q ss_pred HhhcCCCCCCeEEEEcC--cccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC--------CCCC-C
Q 017495 200 DVYRGFDGLKVLVDVGG--GIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN--------VPRG-D 267 (370)
Q Consensus 200 ~~~~~~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~--------~p~~-D 267 (370)
+... ..+..+||=+|| |.|..+..+++.....++++.|. +.-.+.+++..--.++..+-.+. .+.+ |
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 3344 667789999996 36777788888777678888886 65555554322112222221111 1233 7
Q ss_pred EEEecccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 268 AIFLKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 268 ~i~~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
+|+-... . ...++.+.+.++|||+++++-..
T Consensus 100 ~vid~~g-----~---~~~~~~a~~~l~~~G~iv~~G~~ 130 (170)
T d1jvba2 100 AVIDLNN-----S---EKTLSVYPKALAKQGKYVMVGLF 130 (170)
T ss_dssp EEEESCC-----C---HHHHTTGGGGEEEEEEEEECCSS
T ss_pred hhhcccc-----c---chHHHhhhhhcccCCEEEEeccc
Confidence 7765422 1 25577788999999999988643
|
| >d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: LexA repressor, N-terminal DNA-binding domain domain: LexA repressor, N-terminal DNA-binding domain species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.19 Score=32.74 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
-|-|..|||+.+|++ ++..+.+.|..|+..|+|+.
T Consensus 23 ~~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r 57 (71)
T d1jhfa1 23 MPPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEI 57 (71)
T ss_dssp SCCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeec
Confidence 367999999999994 67889999999999999996
|
| >d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: DNA-binding protein Mj223 domain: DNA-binding protein Mj223 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.24 E-value=0.12 Score=39.07 Aligned_cols=47 Identities=19% Similarity=0.109 Sum_probs=38.7
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
...|+-.|... ++|+|+.|||+.+|+ +...+.+.|+.|...|++...
T Consensus 28 ~~~i~~~L~~~-------~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~ 74 (151)
T d1ku9a_ 28 VGAVYAILYLS-------DKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV 74 (151)
T ss_dssp HHHHHHHHHHC-------SSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhC-------CCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEE
Confidence 33456566433 148999999999999 999999999999999999864
|
| >d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Protease production regulatory protein Hpr species: Bacillus subtilis [TaxId: 1423]
Probab=88.73 E-value=0.2 Score=38.59 Aligned_cols=67 Identities=15% Similarity=-0.066 Sum_probs=48.3
Q ss_pred hcChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecchhhhhh
Q 017495 41 ELNVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAAPICKFL 120 (370)
Q Consensus 41 ~lglfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~~~~~~l 120 (370)
+..++..|... +++|+.+||+.+++ ....+.++++.|...|+|+... ...|.+ .-...+|+.+..+
T Consensus 43 q~~vL~~l~~~--------~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~-~~~D~R-~~~l~lT~~G~~~ 108 (162)
T d2fxaa1 43 EHHILWIAYQL--------NGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSK-RLNDKR-NTYVQLTEEGTEV 108 (162)
T ss_dssp HHHHHHHHHHH--------TSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEEC-C-------CEEEECHHHHHH
T ss_pred HHHHHhhhccC--------CCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeec-ccccCe-eeeeccCHhHHHH
Confidence 34466777665 37999999999999 9999999999999999999742 222221 2346778877644
Q ss_pred h
Q 017495 121 I 121 (370)
Q Consensus 121 ~ 121 (370)
.
T Consensus 109 ~ 109 (162)
T d2fxaa1 109 F 109 (162)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=88.44 E-value=0.36 Score=37.40 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC------CC--CCC-CEEEecc
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE------NV--PRG-DAIFLKW 273 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~------~~--p~~-D~i~~~~ 273 (370)
.++..+||=+|||. |.++..+++.+.-.+++++|. +.-.+.+++..-..++...-.+ .. ..+ |+|+-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 66778888899995 888888998765557899997 6656665543222222221111 11 123 8776532
Q ss_pred cccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 274 MLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 274 vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
-- ...++.+.+.++|+|+++++-..
T Consensus 105 g~--------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 105 GG--------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp SC--------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred CC--------HHHHHHHHHHHhcCCEEEEEeec
Confidence 21 24577888999999999997653
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.18 E-value=0.61 Score=39.44 Aligned_cols=57 Identities=18% Similarity=0.127 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcCcccHHHHHHHhhC-CCCeEEEeeh-hhHHHhCCC------CCCCeEEeccCCC
Q 017495 205 FDGLKVLVDVGGGIGVTLGMITSRY-PCIKGISFDL-PHVLANAPS------FPGVEHVGGDMFE 261 (370)
Q Consensus 205 ~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~D~~~ 261 (370)
..+..+|||+.+|.|.=+.+++... +..+++.+|. +.-+...++ ..++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 4567899999999999998888764 4567889997 554444332 2567777777765
|
| >d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Putative transcriptional regulator RHA1 ro03477 species: Rhodococcus sp. RHA1 [TaxId: 101510]
Probab=87.79 E-value=0.19 Score=32.54 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
|..++..+||+.+|+ +..-+++-|+.|++.|+|+..
T Consensus 23 G~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 58 (69)
T d2hs5a1 23 GARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHE 58 (69)
T ss_dssp TCEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 357889999999999 999999999999999999963
|
| >d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: C-terminal domain of RPA32 domain: C-terminal domain of RPA32 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.29 E-value=0.36 Score=31.10 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=42.6
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHC-CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceecc
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARL-PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGAA 114 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~-~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~~ 114 (370)
..||+.+... +...++++.+|++++ ++ +..-++..++.|...|++-.. -. ++.|..|
T Consensus 9 ~~V~~~i~s~-----~~~eGi~~~el~~~l~~~----~~~~i~~aid~L~~eG~IYsT---iD----ddHfkst 66 (69)
T d1dpua_ 9 NQVLNLIKAC-----PRPEGLNFQDLKNQLKHM----SVSSIKQAVDFLSNEGHIYST---VD----DDHFKST 66 (69)
T ss_dssp HHHHHHHHHC-----CCTTTEEHHHHHHHSTTS----CHHHHHHHHHHHHHTTSEEEC---SS----TTEEEES
T ss_pred HHHHHHHHhC-----CCccCcCHHHHHHHccCC----CHHHHHHHHHHHHhCCceecc---cc----cchhccc
Confidence 3466666543 123479999999999 79 999999999999999999853 11 4667654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.41 Score=36.66 Aligned_cols=90 Identities=17% Similarity=0.073 Sum_probs=56.7
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC---C--CCCC-CEEEeccccc
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE---N--VPRG-DAIFLKWMLH 276 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~---~--~p~~-D~i~~~~vLh 276 (370)
.++..+||=+|+| .|.++.++++.+ +.+.+++|. ++-.+.+++..--.++ |..+ . .-.+ |+++-.---
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i--~~~~~~~~~~~~~~~D~vid~~g~- 103 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVV--NSRNADEMAAHLKSFDFILNTVAA- 103 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEE--ETTCHHHHHTTTTCEEEEEECCSS-
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEE--ECchhhHHHHhcCCCceeeeeeec-
Confidence 6778888889987 678888899886 567777775 5545544432222222 2222 1 1123 877654221
Q ss_pred CCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 277 GWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 277 ~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
+ ..++...+.++|+|+++++-.
T Consensus 104 ----~---~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 104 ----P---HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp ----C---CCHHHHHTTEEEEEEEEECCC
T ss_pred ----c---hhHHHHHHHHhcCCEEEEecc
Confidence 1 236677899999999999754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.42 E-value=3 Score=31.72 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=60.5
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC---------CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN---------VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~---------~p~~-D~i~~~ 272 (370)
.++..+||=+||| .|.++..+++.....++++.|. +.-++.+++..-..++...-.+. .+.+ |+++-.
T Consensus 25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~ 104 (174)
T d1p0fa2 25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 104 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence 6778899999998 5666777888777778999997 76777776653333332211111 1223 777653
Q ss_pred ccccCCChhHHHHHHHHHHHhCCC-CcEEEEEeecCC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPE-NGKVIIVESILP 308 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~p-gG~lli~e~~~~ 308 (370)
-.- ...+......+++ +|+++++-...+
T Consensus 105 ~g~--------~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 105 AGR--------IETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp SCC--------HHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred CCC--------chHHHHHHHHHHHhcCceEEEEEecC
Confidence 221 2456666776665 599998775443
|
| >d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Catabolite gene activator protein (CAP), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.93 E-value=0.23 Score=32.01 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=31.7
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+|-++||..+|+ ....+.|.|+.|...|+++.
T Consensus 29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~ 61 (69)
T d1i5za1 29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISA 61 (69)
T ss_dssp ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEE
Confidence 6999999999999 99999999999999999986
|
| >d3bwga1 a.4.5.6 (A:5-82) Transcriptional regulator YydK {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Transcriptional regulator YydK species: Bacillus subtilis [TaxId: 1423]
Probab=85.79 E-value=0.43 Score=31.53 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=32.9
Q ss_pred CCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 59 GELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 59 ~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
+..+ |..+||+.+++ +..-+++-|+.|++.|++...
T Consensus 19 G~~LPse~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~ 55 (78)
T d3bwga1 19 GDKLPVLETLMAQFEV----SKSTITKSLELLEQKGAIFQV 55 (78)
T ss_dssp TCBCCCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 4577 89999999999 999999999999999999963
|
| >d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.15 E-value=0.68 Score=28.29 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 58 HGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 58 ~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+...|+.+||.++++ +...+.+.|-.|...|.+.+
T Consensus 13 ~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k 48 (59)
T d2gxba1 13 EGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQK 48 (59)
T ss_dssp TTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEE
T ss_pred CccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhh
Confidence 3468999999999999 99999999999999999986
|
| >d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Probable transcription regulator BT4300, C-terminal domain species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=84.49 E-value=0.35 Score=31.58 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=31.5
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
++|-++||+.+|+ ....+.|.|+.|...|+++.
T Consensus 27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~ 59 (73)
T d1zyba1 27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIEL 59 (73)
T ss_dssp ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEE
T ss_pred ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 5799999999999 99999999999999999985
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.41 E-value=0.16 Score=39.23 Aligned_cols=97 Identities=15% Similarity=0.206 Sum_probs=59.8
Q ss_pred CCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC--CCCeEEeccCCC---CCCCCCEEEecccccCCC
Q 017495 207 GLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSF--PGVEHVGGDMFE---NVPRGDAIFLKWMLHGWT 279 (370)
Q Consensus 207 ~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~D~~~---~~p~~D~i~~~~vLh~~~ 279 (370)
++.+|+=||+| .|..+...+.+. +..++++|. ++.++..... .+++....+-.. ...++|+|+..--+-.-.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 57899999999 567777777776 578999997 6666544321 234433222111 123459988765543322
Q ss_pred hhHHHHHHHHHHHhCCCCcEEEEEeecCC
Q 017495 280 DEHCLKLLKNCWEALPENGKVIIVESILP 308 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~lli~e~~~~ 308 (370)
.+ .-+=++..+.||||+.++ |...+
T Consensus 110 aP--~lIt~~mv~~Mk~GSVIV--Dvaid 134 (168)
T d1pjca1 110 AP--ILVPASLVEQMRTGSVIV--DVAVD 134 (168)
T ss_dssp CC--CCBCHHHHTTSCTTCEEE--ETTCT
T ss_pred cC--eeecHHHHhhcCCCcEEE--EeecC
Confidence 22 234467889999999655 55443
|
| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: GntR-like transcriptional regulators domain: Fatty acid responsive transcription factor FadR, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.24 E-value=0.41 Score=31.33 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=33.3
Q ss_pred CCCCC-CHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 58 HGELL-SASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 58 ~~~~~-t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
||..+ +..+||+.+++ +..-+++-|+.|+..|+|...
T Consensus 23 ~G~~LPs~~eLa~~~~v----Sr~tvr~Al~~L~~~G~i~~~ 60 (74)
T d1hw1a1 23 PGTILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQ 60 (74)
T ss_dssp TTSBCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEE
Confidence 34578 79999999999 999999999999999999963
|
| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: CAP C-terminal domain-like domain: Transcriptional regulator PG0396, C-terminal domain species: Porphyromonas gingivalis [TaxId: 837]
Probab=84.03 E-value=0.48 Score=31.40 Aligned_cols=33 Identities=24% Similarity=0.100 Sum_probs=31.8
Q ss_pred CCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceec
Q 017495 61 LLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRC 97 (370)
Q Consensus 61 ~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~ 97 (370)
|+|-++||..+|+ .+..+.|.|+.|...|+++.
T Consensus 29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~ 61 (81)
T d2gaua1 29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLAL 61 (81)
T ss_dssp CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEe
Confidence 7899999999999 99999999999999999996
|
| >d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcription factor E/IIe-alpha, N-terminal domain domain: Transcription factor E/IIe-alpha, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=83.99 E-value=0.49 Score=31.90 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=37.6
Q ss_pred ChHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 43 NVIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 43 glfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
.|++.|.+. ++.+|=++||+++|+ ....+|+.|..|...|++...
T Consensus 22 ~v~~~L~~~-------~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~ 66 (88)
T d1q1ha_ 22 DVLRILLDK-------GTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR 66 (88)
T ss_dssp HHHHHHHHH-------CSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHhc-------cCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEE
Confidence 367766542 136999999999999 999999999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.76 E-value=2.7 Score=32.09 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=58.3
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEe---ccCCC------CCCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVG---GDMFE------NVPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~---~D~~~------~~p~~-D~i~~~ 272 (370)
.++..+|+=+|+| .|.++..+++.+...+++++|. ++-++.+++..-..++. .|... ..+.+ |+++-.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence 6678899999998 5667777888777789999997 88777777643222221 11110 01233 776653
Q ss_pred ccccCCChhHHHHHHHHHHHhC-CCCcEEEEEeecC
Q 017495 273 WMLHGWTDEHCLKLLKNCWEAL-PENGKVIIVESIL 307 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L-~pgG~lli~e~~~ 307 (370)
..- ...+......+ +++|+++++-...
T Consensus 107 ~g~--------~~~~~~a~~~~~~~~G~~v~vG~~~ 134 (176)
T d1d1ta2 107 IGH--------LETMIDALASCHMNYGTSVVVGVPP 134 (176)
T ss_dssp SCC--------HHHHHHHHTTSCTTTCEEEECSCCC
T ss_pred CCc--------hHHHHHHHHHhhcCCeEEEEEEccc
Confidence 221 13344555555 4559999876543
|
| >d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MerB N-terminal domain-like domain: Alkylmercury lyase MerB species: Escherichia coli [TaxId: 562]
Probab=83.28 E-value=0.36 Score=29.64 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=29.1
Q ss_pred hHHHHhhcccccCCCCCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhc
Q 017495 44 VIDIISAASAAEDGHGELLSASKIAARLPTKNPDAPFLLDRMLSLLAS 91 (370)
Q Consensus 44 lfd~L~~~~~~~~~~~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~ 91 (370)
++..|+.| .|+|++.||..+|. +...++..|..+.+
T Consensus 7 LLr~LA~G--------~PVs~~~LA~alg~----~~~eV~~aL~~~p~ 42 (60)
T d1s6la1 7 LLRELAKG--------RPVSRTTLAGILDW----PAERVAAVLEQATS 42 (60)
T ss_dssp HHHHHHTT--------CCBCHHHHHHHHTC----CHHHHHHHHTTCCS
T ss_pred HHHHHhCC--------CCcCHHHHHHHhCC----CHHHHHHHHHhCCC
Confidence 56778887 59999999999999 88877777766654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.99 E-value=3.4 Score=31.16 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=59.3
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-C--------CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-N--------VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~--------~p~~-D~i~~~ 272 (370)
.++..+||=+||| .|.++.++++......++..|. +.-.+.+++..--.++..+-.. + .+.+ |+|+-.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~ 105 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence 6778888888877 6677778888877778888886 6666666543222232221111 1 1233 887754
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCCcEEEEEeec
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPENGKVIIVESI 306 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~~ 306 (370)
-- . ...++.+...+++||.++++-..
T Consensus 106 ~G-----~---~~~~~~~~~~~~~g~~~~~v~~~ 131 (176)
T d2fzwa2 106 IG-----N---VKVMRAALEACHKGWGVSVVVGV 131 (176)
T ss_dssp SC-----C---HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CC-----C---HHHHHHHHHhhcCCceeEEEEee
Confidence 22 1 25678889999999877765443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.64 E-value=1.8 Score=32.56 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCCCCeEEEEcCcc-cHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCCC-------CCC-CEEEeccc
Q 017495 205 FDGLKVLVDVGGGI-GVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFENV-------PRG-DAIFLKWM 274 (370)
Q Consensus 205 ~~~~~~vLDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~~-------p~~-D~i~~~~v 274 (370)
.++..+||=.|+|. |..+..+++. .+.++++.+. ++-.+.+++.. .+.+...-.++. ..+ |.++...+
T Consensus 25 ~~~g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~~G-a~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 25 AKPGEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKELG-ADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHTT-CSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CCCCCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhhcC-cceecccccchhhhhcccccCCCceEEeecC
Confidence 66778899899885 4555556665 5668888886 66565555432 121111111111 122 44433222
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
. ...+....++|+|+|++++.-.
T Consensus 103 ----~----~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 103 ----S----KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ----C----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ----C----HHHHHHHHHHhccCCceEeccc
Confidence 1 2568899999999999999754
|
| >d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Z-DNA binding domain domain: 34L species: Yaba-like disease virus, YLDV [TaxId: 132475]
Probab=82.44 E-value=0.92 Score=28.93 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCCceecc
Q 017495 60 ELLSASKIAARLPTKNPDAPFLLDRMLSLLASYDILRCS 98 (370)
Q Consensus 60 ~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g~l~~~ 98 (370)
...|+.+||+.+|+ +..-+.|.|-.|...|.+...
T Consensus 23 ~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~ 57 (70)
T d1sfua_ 23 DYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV 57 (70)
T ss_dssp CEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred CCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence 58999999999999 889999999999999999963
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=82.44 E-value=6.7 Score=29.47 Aligned_cols=92 Identities=20% Similarity=0.143 Sum_probs=57.0
Q ss_pred CCCCCeEEEEcCc-ccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEec-cCCCC--------CCCC-CEEEec
Q 017495 205 FDGLKVLVDVGGG-IGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGG-DMFEN--------VPRG-DAIFLK 272 (370)
Q Consensus 205 ~~~~~~vLDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~-D~~~~--------~p~~-D~i~~~ 272 (370)
.++..+||=+|+| .|.....+++.+...+++..|. +.-.+.+++.....++.. +-.+. .+.+ |+|+-.
T Consensus 26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~ 105 (176)
T d2jhfa2 26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 105 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence 6678899999886 5566777888887789999997 666666655433333321 11111 1224 887764
Q ss_pred ccccCCChhHHHHHHHHHHHhCCCC-cEEEEEe
Q 017495 273 WMLHGWTDEHCLKLLKNCWEALPEN-GKVIIVE 304 (370)
Q Consensus 273 ~vLh~~~d~~~~~iL~~~~~~L~pg-G~lli~e 304 (370)
.-.. ..++.+...++++ |.+++.-
T Consensus 106 ~G~~--------~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 106 IGRL--------DTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SCCH--------HHHHHHHHHBCTTTCEEEECS
T ss_pred CCch--------hHHHHHHHHHhcCCcceEEec
Confidence 3322 4466777888887 5555543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=82.34 E-value=1.3 Score=38.61 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=36.5
Q ss_pred CchHHHHHHHHHHhchHHHHHHHHHhhcCCCCCCeEEEEcCcccHHHHHHHhhC-------CCCeEEEeeh
Q 017495 176 DPRFNGVFNEAMSNHSALVMNKILDVYRGFDGLKVLVDVGGGIGVTLGMITSRY-------PCIKGISFDL 239 (370)
Q Consensus 176 ~~~~~~~~~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-------p~~~~~~~D~ 239 (370)
.|+....|...++.+ ...+...+. .++..+|+|+|+|+|.++..+++.+ ..++++.++.
T Consensus 53 sp~is~~Fg~~ia~~----~~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~ 118 (365)
T d1zkda1 53 SPEISQMFGELLGLW----SASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEI 118 (365)
T ss_dssp HHHHCHHHHHHHHHH----HHHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECC
T ss_pred CCchHHHHHHHHHHH----HHHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEecc
Confidence 345555555544321 122233333 4456789999999999998876653 3346777876
|
| >d1xmaa_ a.4.5.61 (A:) Predicted transcriptional regulator {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: PadR-like domain: Predicted transcriptional regulator species: Clostridium thermocellum [TaxId: 1515]
Probab=82.30 E-value=0.42 Score=33.54 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=45.3
Q ss_pred cChHHHHhhcccccCCCCCCCCHHHHHHHC--------CCCCCCCcchHHHHHHHHhcCCceeccccCCCCCccccceec
Q 017495 42 LNVIDIISAASAAEDGHGELLSASKIAARL--------PTKNPDAPFLLDRMLSLLASYDILRCSLQNGDNGQVERVYGA 113 (370)
Q Consensus 42 lglfd~L~~~~~~~~~~~~~~t~~ela~~~--------~~~~~~~~~~l~~~L~~L~~~g~l~~~~~~~~~g~~~~~y~~ 113 (370)
+=|+..|..+ |.+--||.+.+ ++ ++..+...|+-|...|+|+....+...|+....|..
T Consensus 10 ~~IL~lL~~~---------~~~GYei~~~l~~~~~~~~~i----s~gslY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~i 76 (103)
T d1xmaa_ 10 TIILSLLIEG---------DSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRI 76 (103)
T ss_dssp HHHHHHHHHC---------CEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEE
T ss_pred HHHHHHHhhC---------CccHHHHHHHHHHHcCCeecC----CCCchHHHHHHHHHCCCeEEEeeccCCCCCceEEEE
Confidence 3355566665 78888888764 35 889999999999999999853212233443456999
Q ss_pred chhhhh
Q 017495 114 APICKF 119 (370)
Q Consensus 114 ~~~~~~ 119 (370)
|+.++.
T Consensus 77 T~~G~~ 82 (103)
T d1xmaa_ 77 TPEGIK 82 (103)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999873
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.10 E-value=1.4 Score=33.54 Aligned_cols=89 Identities=21% Similarity=0.179 Sum_probs=58.0
Q ss_pred CCCCCeEEEEcC--cccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCC-C---------CCCC-CEEE
Q 017495 205 FDGLKVLVDVGG--GIGVTLGMITSRYPCIKGISFDL-PHVLANAPSFPGVEHVGGDMFE-N---------VPRG-DAIF 270 (370)
Q Consensus 205 ~~~~~~vLDvG~--G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~-~---------~p~~-D~i~ 270 (370)
..+..+||-.|+ |.|..+..+++.. ++++++.+. ++-.+.+++..--.++ |..+ + -+.+ |+|+
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi--~~~~~~~~~~i~~~t~~~g~d~v~ 102 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVF--NHREVNYIDKIKKYVGEKGIDIII 102 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEE--ETTSTTHHHHHHHHHCTTCEEEEE
T ss_pred CCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCccccc--ccccccHHHHhhhhhccCCceEEe
Confidence 667889999985 6888899999876 467777764 6555555543222222 2222 1 1233 8777
Q ss_pred ecccccCCChhHHHHHHHHHHHhCCCCcEEEEEee
Q 017495 271 LKWMLHGWTDEHCLKLLKNCWEALPENGKVIIVES 305 (370)
Q Consensus 271 ~~~vLh~~~d~~~~~iL~~~~~~L~pgG~lli~e~ 305 (370)
-.. . ...++...+.|+|+|+++.+-.
T Consensus 103 d~~-----g----~~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 103 EML-----A----NVNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp ESC-----H----HHHHHHHHHHEEEEEEEEECCC
T ss_pred ecc-----c----HHHHHHHHhccCCCCEEEEEec
Confidence 532 1 2457888999999999998753
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.67 E-value=5.5 Score=28.44 Aligned_cols=84 Identities=11% Similarity=0.015 Sum_probs=51.2
Q ss_pred eEEEEcCcccHHHHHHHhhC--CCCeEEEeeh-hhHHHhCCCCCCCeEEeccCCCC-------CCCCCEEEecccccCCC
Q 017495 210 VLVDVGGGIGVTLGMITSRY--PCIKGISFDL-PHVLANAPSFPGVEHVGGDMFEN-------VPRGDAIFLKWMLHGWT 279 (370)
Q Consensus 210 ~vLDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~D~~~~-------~p~~D~i~~~~vLh~~~ 279 (370)
+|+=+|+ |.++..+++.+ .+..++++|. |+.++...+.-.+.++.||..++ ...+|.++.. .+
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~-----t~ 74 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAV-----TG 74 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEEC-----CS
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhccc-----CC
Confidence 5666776 45555555443 3578899997 77776654433678999998872 1223777663 22
Q ss_pred hhHHHHHHHHHHHhCCCCcEE
Q 017495 280 DEHCLKLLKNCWEALPENGKV 300 (370)
Q Consensus 280 d~~~~~iL~~~~~~L~pgG~l 300 (370)
+++...++....+.+.+.-.+
T Consensus 75 ~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 75 KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CHHHHHHHHHHHHHTTCCCEE
T ss_pred cHHHHHHHHHHHHHcCCceEE
Confidence 344444555666778877443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=80.24 E-value=0.94 Score=34.73 Aligned_cols=89 Identities=17% Similarity=0.169 Sum_probs=51.6
Q ss_pred CeEEEEcCcccHHHHHHHhhCCCCeEEEeeh-hhHHHhCCCC-------CCCe------EEeccCCCCCCCCCEEEeccc
Q 017495 209 KVLVDVGGGIGVTLGMITSRYPCIKGISFDL-PHVLANAPSF-------PGVE------HVGGDMFENVPRGDAIFLKWM 274 (370)
Q Consensus 209 ~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~------~~~~D~~~~~p~~D~i~~~~v 274 (370)
++|.=||+|.-..+.+..-.--+..++++|. +.-++..+.. .... ....|..+..+..|+|++.-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v- 80 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV- 80 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS-
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE-
Confidence 4778899996544443222224678999997 5555543321 1111 11111111123459988752
Q ss_pred ccCCChhHHHHHHHHHHHhCCCCcEEEE
Q 017495 275 LHGWTDEHCLKLLKNCWEALPENGKVII 302 (370)
Q Consensus 275 Lh~~~d~~~~~iL~~~~~~L~pgG~lli 302 (370)
+......+++.+...|+++..+++
T Consensus 81 ----~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 81 ----PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp ----CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred ----chhHHHHHHHHhhhccCCCCEEEE
Confidence 344567899999999999876654
|
| >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: Homeodomain-like family: AraC type transcriptional activator domain: MarA species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=1.1 Score=26.94 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHCCCCCCCCcchHHHHHHHHhcCC
Q 017495 59 GELLSASKIAARLPTKNPDAPFLLDRMLSLLASYD 93 (370)
Q Consensus 59 ~~~~t~~ela~~~~~~~~~~~~~l~~~L~~L~~~g 93 (370)
..++|+++||+.+|+ ++..+.|+.+......
T Consensus 17 ~~~~tl~~lA~~~~~----s~~~l~r~Fk~~~g~t 47 (54)
T d1bl0a1 17 ESPLSLEKVSERSGY----SKWHLQRMFKKETGHS 47 (54)
T ss_dssp TSCCCCHHHHHHSSS----CHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHCc----CHHHHHHHHHHHHCcC
Confidence 458999999999999 9999999998766544
|