Citrus Sinensis ID: 017508

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MNHGGGESTSRSESRTDTSSDRPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIENPQELSQL
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccc
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHcccccccccccEEcccccccccEEEEccccccHHHHHcccHHHcccccccccccHccccHHHHHHHHHHHHHHHcccHHccc
mnhgggestsrsesrtdtssdrpkaeDFSRAVSKMAVAQICESvgfqgfkdsALDALSDIAIRYICdlgktssfqANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFveskeeipfaqpipqypvirsrrlipsfeemnetppgkhipswlpafpdphtyiytpmwnerksdpraDKIELARQRRKAEMALLSLQQRLVcngetgtsasrpandeeellktgsnpffakplqsgekdispvglpaklkdkmsggnhMSVMEAFAPAIEAVKvsgfsddadgdrrylpekrpavhFKFRAGKKFLGEILDSslqkkggrrsasfwrdeekdDKKRRAEFILKQSienpqelsql
mnhgggestsrsesrtdtssdrpkaEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKeeipfaqpipqypviRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPmwnerksdprADKIELARQRRKAEMALLSLQQRLVCNgetgtsasrpandEEELLKTGSNPffakplqsgekdispvGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDrrylpekrpavhFKFRAGKKFlgeildsslqkkggrrsasfwrdeekddkkRRAEFilkqsienpqelsql
MNHgggestsrsesrtdtssdrPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIENPQELSQL
*********************************KMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRSRRLIP*************IPSWLPAFPDPHTYIYTPMWN***********************************************************************************************FAPAIEAVKV*******************AVHFKFRAGKKFLGEIL*********************************************
*****************************RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMG***************EIIDFVESKEEI******************************KHIPSWLPAFPDPHTY*****************************************************************************************************************************************RA******************************************************
*******************************VSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSS*********************KRRAEFILKQSIENPQELSQL
***********************KAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRS**************PGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVC********************************************************MSVMEAF*PAIEAVKV*GFSD**DGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQ*****RSASFWRDEEKDDKKRRAEFILKQSIEN*******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNHGGGESTSRSESRTDTSSDRPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADxxxxxxxxxxxxxxxxxxxxxLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIENPQELSQL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9EQH4308 Transcription initiation yes no 0.448 0.538 0.259 5e-10
Q7Z7C8310 Transcription initiation yes no 0.448 0.535 0.259 5e-10
A7MAZ4310 Transcription initiation yes no 0.448 0.535 0.259 5e-10
Q7ZYA2293 Transcription initiation N/A no 0.448 0.566 0.253 1e-09
Q6P0T2308 Transcription initiation no no 0.529 0.636 0.248 3e-09
Q28J24293 Transcription initiation yes no 0.421 0.532 0.266 5e-09
Q5F489 930 Transcription initiation yes no 0.283 0.112 0.28 6e-08
Q5VWG9 929 Transcription initiation no no 0.340 0.135 0.261 3e-07
Q03750 510 Transcription initiation yes no 0.213 0.154 0.354 5e-07
Q5HZG4 932 Transcription initiation no no 0.343 0.136 0.26 1e-06
>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=1 Back     alignment and function desciption
 Score = 65.9 bits (159), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 27/193 (13%)

Query: 30  RAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDI 89
           R   ++ V+ +    GF+  + ++++ L+++   YI ++G+++        RT+  L DI
Sbjct: 32  RRTLQVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDI 91

Query: 90  IRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVE-SKEEIPFAQPIPQYPVIRSRRL 148
           +  + ++    GF               V  +  + + S+  +  A P+   PV      
Sbjct: 92  VVTLVEM----GFN--------------VDTLPAYAKRSQRMVITAPPVTNQPVTPK--- 130

Query: 149 IPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMAL 208
             +       P   HIPS  P FPDPHTYI TP + E  SD +  + + A QRR  E AL
Sbjct: 131 --ALTAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQILREKAASQRRDVERAL 188

Query: 209 LSLQQRLVCNGET 221
                 +   GET
Sbjct: 189 TRF---MAKTGET 198
Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex (By similarity). May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.
Mus musculus (taxid: 10090)
>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=1 Back     alignment and function description
>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1 Back     alignment and function description
>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis GN=taf8 PE=2 SV=1 Back     alignment and function description
>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio GN=taf8 PE=1 SV=1 Back     alignment and function description
>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus tropicalis GN=taf8 PE=2 SV=1 Back     alignment and function description
>sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subunit 3 OS=Gallus gallus GN=TAF3 PE=2 SV=1 Back     alignment and function description
>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens GN=TAF3 PE=1 SV=1 Back     alignment and function description
>sp|Q03750|TAF8_YEAST Transcription initiation factor TFIID subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TAF8 PE=1 SV=1 Back     alignment and function description
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus GN=Taf3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
225440055368 PREDICTED: uncharacterized protein LOC10 0.981 0.986 0.600 1e-124
255556950356 conserved hypothetical protein [Ricinus 0.937 0.974 0.619 1e-115
224069535315 predicted protein [Populus trichocarpa] 0.829 0.974 0.601 1e-114
224140205316 predicted protein [Populus trichocarpa] 0.845 0.990 0.565 1e-112
225451729377 PREDICTED: uncharacterized protein LOC10 0.986 0.968 0.526 1e-105
296082209357 unnamed protein product [Vitis vinifera] 0.959 0.994 0.526 1e-101
147864648366 hypothetical protein VITISV_014912 [Viti 0.956 0.967 0.507 4e-99
224141083382 predicted protein [Populus trichocarpa] 0.997 0.965 0.475 3e-91
449440123370 PREDICTED: uncharacterized protein LOC10 0.970 0.970 0.485 2e-90
224077734394 predicted protein [Populus trichocarpa] 0.989 0.928 0.463 4e-88
>gi|225440055|ref|XP_002282259.1| PREDICTED: uncharacterized protein LOC100260255 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/368 (60%), Positives = 279/368 (75%), Gaps = 5/368 (1%)

Query: 5   GGESTSRSESRTDTSSDRPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRY 64
           GGE   R+    + +  R   ++F RAVSK+AVAQICESVGF+GF+DSAL ALS+IA+RY
Sbjct: 4   GGEDDRRNSD--NNAPKRAGPDEFGRAVSKIAVAQICESVGFEGFQDSALQALSNIAVRY 61

Query: 65  ICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDF 124
           +CD+GKT++F ANLA RT+CN+FD+IRG+EDL   +GF GA+ + +C+V SG V+EI+++
Sbjct: 62  LCDVGKTANFCANLAGRTQCNVFDVIRGLEDLGSSEGFSGASGVDQCIVSSGTVREIVEY 121

Query: 125 VESKEEIPFAQPIPQYPVIRSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWN 184
           V S +EIPFAQP+P++PV+R+ +  PSF +M ETP GKHIP WLPAFPD HTYI TPMWN
Sbjct: 122 VNSAKEIPFAQPVPRFPVVRNCKATPSFVQMGETPVGKHIPPWLPAFPDSHTYIQTPMWN 181

Query: 185 ERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTG-SNPF 243
           ER +DPRADK+E ARQRRKAE +LLSLQQRLVCNG    S S    D+ E  +    NP+
Sbjct: 182 ERATDPRADKLEQARQRRKAERSLLSLQQRLVCNGSASASTSVGRCDDAEASRAAEGNPY 241

Query: 244 FAKPLQSGEKDISPVGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYL 303
            A PLQ GEKD+S V LPAKL D +   NH+SV+E FAPAIEAVK S F D  + ++  +
Sbjct: 242 LASPLQFGEKDVSTVVLPAKLLDDLVVDNHVSVLETFAPAIEAVKNS-FVDSGESEKNVV 300

Query: 304 PEKRPAVHFKFRAGKKFLGEILDSSLQKKG-GRRSASFWRDEEKDDKKRRAEFILKQSIE 362
           PEKR AVHFK R GKK LGE +D  L+ K  G+  +   RDEE+DDKKRRAE+IL+QS+E
Sbjct: 301 PEKRSAVHFKLRTGKKILGESVDLRLKNKSVGKVVSLIGRDEERDDKKRRAEYILRQSME 360

Query: 363 NPQELSQL 370
           NPQEL+QL
Sbjct: 361 NPQELTQL 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556950|ref|XP_002519508.1| conserved hypothetical protein [Ricinus communis] gi|223541371|gb|EEF42922.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224069535|ref|XP_002326367.1| predicted protein [Populus trichocarpa] gi|222833560|gb|EEE72037.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224140205|ref|XP_002323475.1| predicted protein [Populus trichocarpa] gi|222868105|gb|EEF05236.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225451729|ref|XP_002277032.1| PREDICTED: uncharacterized protein LOC100246447 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082209|emb|CBI21214.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147864648|emb|CAN79809.1| hypothetical protein VITISV_014912 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224141083|ref|XP_002323904.1| predicted protein [Populus trichocarpa] gi|222866906|gb|EEF04037.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449440123|ref|XP_004137834.1| PREDICTED: uncharacterized protein LOC101219874 [Cucumis sativus] gi|449518276|ref|XP_004166168.1| PREDICTED: uncharacterized LOC101219874 [Cucumis sativus] Back     alignment and taxonomy information
>gi|224077734|ref|XP_002305385.1| predicted protein [Populus trichocarpa] gi|222848349|gb|EEE85896.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2116149353 TAF8 "TBP-associated factor 8" 0.686 0.719 0.510 9.7e-64
TAIR|locus:2180852381 AT5G15570 "AT5G15570" [Arabido 0.870 0.845 0.339 2e-40
TAIR|locus:2076567397 AT3G02160 [Arabidopsis thalian 0.867 0.808 0.317 2.1e-38
TAIR|locus:2197530277 AT1G31240 [Arabidopsis thalian 0.397 0.530 0.333 3.7e-19
RGD|1308423308 Taf8 "TAF8 RNA polymerase II, 0.235 0.282 0.378 7.2e-09
UNIPROTKB|A7MAZ4310 TAF8 "Transcription initiation 0.235 0.280 0.378 7.4e-09
UNIPROTKB|E2RN76310 TAF8 "Uncharacterized protein" 0.235 0.280 0.378 7.4e-09
UNIPROTKB|Q7Z7C8310 TAF8 "Transcription initiation 0.235 0.280 0.378 7.4e-09
MGI|MGI:1926879308 Taf8 "TAF8 RNA polymerase II, 0.235 0.282 0.378 9.6e-09
ZFIN|ZDB-GENE-040426-1013308 taf8 "TAF8 RNA polymerase II, 0.235 0.282 0.389 1.5e-07
TAIR|locus:2116149 TAF8 "TBP-associated factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 140/274 (51%), Positives = 185/274 (67%)

Query:    27 DFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNL 86
             +FS A +K AVAQ+CESVG++ FKD AL++LS  A++YI  LGKT++  ANL  R++CN+
Sbjct:    25 EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84

Query:    87 FDIIRGIEDLEVLKGFMGAAEIGKCLVGSGI-VKEIIDFVESKEEIPFAQPIPQYPVI-- 143
             FDII  ++DL    G  G +    C +G  I ++EIIDFV S EE+PF+QP+P +PV   
Sbjct:    85 FDIILALDDLTDNNGEQGISS-ESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAIS 143

Query:   144 -RSRRLIPSFEEMNETPPGKHIPSWLPAFPDPHTYIYTPMWNERKSDPRADKIELARQRR 202
              RSR++IPSF E+ ETPPGKHIP WLPAFPDPHTY  TPMW ER SDPR DKIE ARQRR
Sbjct:   144 DRSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRR 203

Query:   203 KAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGSNPFFAKPLQSGEKDISPVGLPA 262
             KAE ALLSLQ++LVC      S+  P   + + +K        + ++  E ++  V    
Sbjct:   204 KAERALLSLQRKLVCK----ISSRNPVWGDMDGVK--------EEMRDDESELRSVSSGE 251

Query:   263 KLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDA 296
             K++     G  +SV+EAFAPA+EA +  GFS +A
Sbjct:   252 KVESLNRDG--LSVIEAFAPAMEAAR-DGFSSEA 282
GO:0003677 "DNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2180852 AT5G15570 "AT5G15570" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076567 AT3G02160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197530 AT1G31240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1308423 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7MAZ4 TAF8 "Transcription initiation factor TFIID subunit 8" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN76 TAF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z7C8 TAF8 "Transcription initiation factor TFIID subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1926879 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1013 taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023237001
SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (368 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
smart0057677 smart00576, BTP, Bromodomain transcription factors 2e-23
cd0804954 cd08049, TAF8, TATA Binding Protein (TBP) Associat 2e-23
pfam1040651 pfam10406, TAF8_C, Transcription factor TFIID comp 4e-19
pfam0752477 pfam07524, Bromo_TP, Bromodomain associated 5e-19
>gnl|CDD|128846 smart00576, BTP, Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information 
 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 34/77 (44%), Positives = 51/77 (66%)

Query: 26  EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN 85
            + + A+ ++AVAQI ES GF  F++SAL+ L+DI   YI +LG+T+   A LA RTE N
Sbjct: 1   NELAFALLRIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPN 60

Query: 86  LFDIIRGIEDLEVLKGF 102
           L D++  +E+L +  G 
Sbjct: 61  LGDVVLALENLGISVGE 77

subdomain of archael histone-like transcription factors. Length = 77
>gnl|CDD|176263 cd08049, TAF8, TATA Binding Protein (TBP) Associated Factor 8 Back     alignment and domain information
>gnl|CDD|192573 pfam10406, TAF8_C, Transcription factor TFIID complex subunit 8 C-term Back     alignment and domain information
>gnl|CDD|219450 pfam07524, Bromo_TP, Bromodomain associated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG2389353 consensus Predicted bromodomain transcription fact 100.0
KOG4336323 consensus TBP-associated transcription factor Prod 100.0
PF1040651 TAF8_C: Transcription factor TFIID complex subunit 99.84
cd0804954 TAF8 TATA Binding Protein (TBP) Associated Factor 99.82
smart0057677 BTP Bromodomain transcription factors and PHD doma 99.82
PF0752477 Bromo_TP: Bromodomain associated; InterPro: IPR006 99.81
PLN00035103 histone H4; Provisional 98.82
PTZ00015102 histone H4; Provisional 98.82
cd0007685 H4 Histone H4, one of the four histones, along wit 98.68
cd07979117 TAF9 TATA Binding Protein (TBP) Associated Factor 98.54
smart0080365 TAF TATA box binding protein associated factor. TA 98.37
COG203691 HHT1 Histones H3 and H4 [Chromatin structure and d 98.33
PF02291129 TFIID-31kDa: Transcription initiation factor IID, 98.21
smart0041774 H4 Histone H4. 98.16
PF1563076 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 98.14
KOG3467103 consensus Histone H4 [Chromatin structure and dyna 97.96
KOG3334148 consensus Transcription initiation factor TFIID, s 97.9
PF0296966 TAF: TATA box binding protein associated factor (T 97.65
cd0798172 TAF12 TATA Binding Protein (TBP) Associated Factor 97.26
PF0012575 Histone: Core histone H2A/H2B/H3/H4 histone h2a si 97.15
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 97.1
COG5094145 TAF9 Transcription initiation factor TFIID, subuni 96.77
PF0080865 CBFD_NFYB_HMF: Histone-like transcription factor ( 96.76
PF15511414 CENP-T: Centromere kinetochore component CENP-T; P 95.98
smart00428105 H3 Histone H3. 95.95
cd0797892 TAF13 The TATA Binding Protein (TBP) Associated Fa 95.48
KOG3423176 consensus Transcription initiation factor TFIID, s 95.42
PLN00161135 histone H3; Provisional 95.04
PLN0016097 histone H3; Provisional 94.68
PTZ00018136 histone H3; Provisional 94.09
PF0226993 TFIID-18kDa: Transcription initiation factor IID, 94.07
KOG2549 576 consensus Transcription initiation factor TFIID, s 93.91
KOG0870172 consensus DNA polymerase epsilon, subunit D [Trans 93.85
PLN00121136 histone H3; Provisional 93.75
PF0354051 TFIID_30kDa: Transcription initiation factor TFIID 93.59
cd00074115 H2A Histone 2A; H2A is a subunit of the nucleosome 92.66
KOG0869168 consensus CCAAT-binding factor, subunit A (HAP3) [ 90.1
KOG1142258 consensus Transcription initiation factor TFIID, s 90.08
PF0384768 TFIID_20kDa: Transcription initiation factor TFIID 88.0
COG5095 450 TAF6 Transcription initiation factor TFIID, subuni 87.85
COG5162197 Transcription initiation factor TFIID, subunit TAF 85.28
KOG3901109 consensus Transcription initiation factor IID subu 85.26
KOG0871156 consensus Class 2 transcription repressor NC2, bet 83.62
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.7e-46  Score=362.30  Aligned_cols=347  Identities=24%  Similarity=0.358  Sum_probs=283.8

Q ss_pred             CCCCCCCCCccccCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 017508            3 HGGGESTSRSESRTDTSSDRPKAEDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRT   82 (370)
Q Consensus         3 ~g~~~~~~~~~~~~~~~~~~~~~ddf~r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT   82 (370)
                      |+++.+ |.++.+..+.++..++++|++++++++|||||+++||++...+||++|+++++.||++||+.||.|+|++||+
T Consensus         2 n~~r~~-~~~q~~~~~~~~~~~~~~ya~sla~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~   80 (353)
T KOG2389|consen    2 NTYRRN-ENQQAEEESERSESEEAEYAFSLARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRT   80 (353)
T ss_pred             cccccc-hhhhhhhhcCccchhHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCC
Confidence            344443 4466668999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHhccccccccccccccccccCcchhHHHHHhhhhcCCCCCCCCCCCCCCccc-CCCCCccccCCCCCCC
Q 017508           83 ECNLFDIIRGIEDLEVLKGFMGAAEIGKCLVGSGIVKEIIDFVESKEEIPFAQPIPQYPVIRS-RRLIPSFEEMNETPPG  161 (370)
Q Consensus        83 ~p~~~DV~~AL~~mGi~~gf~~~~~~~~~l~~S~~l~eL~~yv~~~~~ipf~~~lP~fPv~~~-~~~~psfl~~G~~~~p  161 (370)
                      +||++|+++||.+++++.|+.+.+.-.|||++|+++++|+.|+...++|||.+++|+||+.+. ..+.|+|...|.++++
T Consensus        81 epnl~Div~Al~dls~s~~~~~~~~~s~~L~ds~v~rdii~~~g~~eevpF~~~lP~Fp~s~s~~k~~l~~~~~g~~pp~  160 (353)
T KOG2389|consen   81 EPNLFDIVLALQDLSASLGASGSSGESHCLLDSKVLRDIIIFNGKAEEVPFKDDLPRFPVSKSVNKPFLKFGSVGAEPPG  160 (353)
T ss_pred             CccHHHHHHHHHHhhhhcccccccchhHHHhhhhhHHHHHhhccccccCCCCCCCCccccccccccCCCCccccCCCCCC
Confidence            999999999999999998888888889999999999999999999999999999999999987 6678999999999999


Q ss_pred             CCCCCCCC-CCCCCCccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcHHhhhhcCC
Q 017508          162 KHIPSWLP-AFPDPHTYIYTPMWNERKSDPRADKIELARQRRKAEMALLSLQQRLVCNGETGTSASRPANDEEELLKTGS  240 (370)
Q Consensus       162 ~hIP~~LP-~FP~~HTY~~TPiy~~~~tD~~~iR~k~aeq~R~~EkAL~~L~~r~~~~g~~~~~~~~~~~~~~~~~~~~~  240 (370)
                      .|||.||| +||+.|+|..+|.++....+++.--.+.+.+.+.++.+.....+...+--.        .+........++
T Consensus       161 ~~Ip~wLP~~fp~~~~~~~s~e~~~~~~~~~~~~~~~~s~~~~~~ls~~~~~r~~v~k~~--------~~~~~~~~~s~g  232 (353)
T KOG2389|consen  161 ESIPIWLPPAFPDLEGCSKSPEGNVTVPKPEGRPPEKASLELRASLSEDSGGRLQVKKDS--------EEKEKPEWTSKG  232 (353)
T ss_pred             ccccccCCCCCCCcccCCCCccccccccCcccCchhhhhhhhhhhhhhhccccchhhhhh--------hhhcCcccccCC
Confidence            99999999 999999999999999888887766666666655555554444111110000        111111122288


Q ss_pred             CCCCCCCCCCCcccccc--ccCCcccccccCCCCCcchhhhhhhHHHHhhhcCCccCCCCCcccCCCCCCceeeeeecCc
Q 017508          241 NPFFAKPLQSGEKDISP--VGLPAKLKDKMSGGNHMSVMEAFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFKFRAGK  318 (370)
Q Consensus       241 npfl~~p~~~~ek~vs~--v~~~~~~~~~~~~~~~~~~~e~fa~a~~~~~~~~~~~~~~~~~~~~~~~r~~~~~k~~~~k  318 (370)
                      |+|+.++.++|+++||.  +|.+..       .-.++|-.++.||.+.+. ..+.-+.   -+.+-+..|.|.-+..|.|
T Consensus       233 ~~~~~~~~~~~~~~vs~~~kV~~~~-------~~~~~i~t~~~Pa~~~~~-p~l~~~a---~~e~~~~k~v~~~t~d~ek  301 (353)
T KOG2389|consen  233 PKKLTRAEEIRDQLVSAKSKVVLLN-------RVGAPIQTTLPPAQQPAT-PILVPQA---SMEPATNKPVVGATVDIEK  301 (353)
T ss_pred             Chhhhcchhcccccccccccccccc-------cCCceeeccCCCcccCCc-ccccccc---ccccccCcccccchhhhhh
Confidence            99999999999999996  777776       447788889999988877 5554444   3345566677777778888


Q ss_pred             chhhhhhhhhhhhhCCCCCccccccccchHHHHHHHHHHHHHhhCcccccc
Q 017508          319 KFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIENPQELSQ  369 (370)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ra~~il~~~~~np~~l~~  369 (370)
                      +.++.+....++.+....-.|.-....+||+.+|+++++|+.|.|+-++.+
T Consensus       302 ~~~~~~~~~l~~~k~~~~~~s~~~~~~~ed~~kr~k~~~r~~~~e~~d~~~  352 (353)
T KOG2389|consen  302 APFLLAEPALLVEKKTERQFSEGPSSSREDQEKRPKKEKRDKSSEEYDEYK  352 (353)
T ss_pred             chhhcccchhhhhhhcccccccccccchhhhhcchhhhhhhccchhhhhhc
Confidence            888888888777766666566665666699999999999999999987654

>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription] Back     alignment and domain information
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID [] Back     alignment and domain information
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8 Back     alignment and domain information
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins Back     alignment and domain information
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO) Back     alignment and domain information
>PLN00035 histone H4; Provisional Back     alignment and domain information
>PTZ00015 histone H4; Provisional Back     alignment and domain information
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution Back     alignment and domain information
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>smart00803 TAF TATA box binding protein associated factor Back     alignment and domain information
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics] Back     alignment and domain information
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>smart00417 H4 Histone H4 Back     alignment and domain information
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C Back     alignment and domain information
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex Back     alignment and domain information
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ] Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin Back     alignment and domain information
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T Back     alignment and domain information
>smart00428 H3 Histone H3 Back     alignment and domain information
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PLN00161 histone H3; Provisional Back     alignment and domain information
>PLN00160 histone H3; Provisional Back     alignment and domain information
>PTZ00018 histone H3; Provisional Back     alignment and domain information
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18) Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription] Back     alignment and domain information
>PLN00121 histone H3; Provisional Back     alignment and domain information
>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors Back     alignment and domain information
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome Back     alignment and domain information
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription] Back     alignment and domain information
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription] Back     alignment and domain information
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 4e-07
 Identities = 55/419 (13%), Positives = 110/419 (26%), Gaps = 127/419 (30%)

Query: 27  DFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECN- 85
           DF     +     I   V    F D       +   + + D+ K      ++  + E + 
Sbjct: 8   DFETGEHQYQYKDILS-VFEDAFVD-------NFDCKDVQDMPK------SILSKEEIDH 53

Query: 86  -------------LFDIIR-----GIEDL--EVLK---GFMGAAEIGKCLVGSGIVKEII 122
                        LF  +       ++    EVL+    F+ +    +    S + +  I
Sbjct: 54  IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 123 DFVESKEEIPFAQPIPQYPVIRSR---RLIPSFEEMNETP---------PGKHIPSWLPA 170
           +  +        Q   +Y V R +   +L  +  E+              GK   +W+  
Sbjct: 114 EQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK---TWVAL 168

Query: 171 -----------FPDPHTYIYTPMWNERKSDPRADKIELARQRRKAE--MALLSLQQRLVC 217
                             I+   W           + L            L  L  ++  
Sbjct: 169 DVCLSYKVQCKMDFK---IF---W-----------LNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 218 NGETGTSASRPANDEEELLKTGSNPFFA-KPLQSG---------EKDISPVGLPAK---- 263
           N  + +  S         ++         KP ++           K  +   L  K    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271

Query: 264 -----LKDKMSGGN--HMSVME---AFAPAIEAVKVSGFSDDADGDRRYLPEKRPAVHFK 313
                + D +S     H+S+        P  E   +       D   + LP +    +  
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSL--LLKYLDCRPQDLPREVLTTN-- 326

Query: 314 FRAGKKFLGEILDSSLQKKGGRRSASFWRDEEKDDKKRRAEFILKQSIEN--PQELSQL 370
                     I+  S++          W+    D        I++ S+    P E  ++
Sbjct: 327 -----PRRLSIIAESIRDGLAT--WDNWKHVNCDKLTT----IIESSLNVLEPAEYRKM 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
2yfw_B103 Histone H4, H4; cell cycle, kinetochore, centromer 98.96
1tzy_D103 Histone H4-VI; histone-fold, tetramer-dimer-dimer, 98.93
1id3_B102 Histone H4; nucleosome core particle, chromatin, p 98.81
1taf_A68 TFIID TBP associated factor 42; transcription init 98.71
2hue_C84 Histone H4; mini beta sheet, elongated beta sandwh 98.7
1ku5_A70 HPHA, archaeal histon; histone fold, DNA binding p 98.44
4dra_A113 Centromere protein S; DNA binding complex, DNA dam 98.33
3b0b_B107 CENP-S, centromere protein S; histone fold, DNA bi 98.32
3v9r_A90 MHF1, uncharacterized protein YOL086W-A; histone f 98.32
3b0c_T111 CENP-T, centromere protein T; histone fold, DNA bi 98.3
3vh5_A140 CENP-S; histone fold, chromosome segregation, DNA 98.23
1taf_B70 TFIID TBP associated factor 62; transcription init 98.21
2ly8_A121 Budding yeast chaperone SCM3; centromere protein, 98.11
2l5a_A235 Histone H3-like centromeric protein CSE4, protein 98.08
1b67_A68 Protein (histone HMFA); DNA binding protein; 1.48A 97.87
1f1e_A154 Histone fold protein; archaeal histone protein, DN 97.72
1f1e_A154 Histone fold protein; archaeal histone protein, DN 97.69
1n1j_A93 NF-YB; histone-like PAIR, DNA binding protein; 1.6 97.61
1jfi_B179 DR1 protein, transcription regulator NC2 beta chai 97.26
2byk_B128 Chrac-14; nucleosome sliding, histone fold, DNA-bi 97.13
3b0c_W76 CENP-W, centromere protein W; histone fold, DNA bi 97.1
3nqj_A82 Histone H3-like centromeric protein A; alpha helix 96.79
2hue_B77 Histone H3; mini beta sheet, elongated beta sandwh 96.67
3nqu_A140 Histone H3-like centromeric protein A; alpha helix 96.61
3r45_A156 Histone H3-like centromeric protein A; histone fol 96.43
2yfv_A100 Histone H3-like centromeric protein CSE4; cell cyc 96.06
1tzy_C136 Histone H3; histone-fold, tetramer-dimer-dimer, DN 95.78
1n1j_B97 NF-YC; histone-like PAIR, DNA binding protein; 1.6 95.52
2nqb_D123 Histone H2B; nucleosome, NCP, chromatin, structura 94.04
1tzy_B126 Histone H2B; histone-fold, tetramer-dimer-dimer, D 93.86
2nqb_C123 Histone H2A; nucleosome, NCP, chromatin, structura 93.48
2f8n_G120 Core histone macro-H2A.1; nucleosome, NCP, macroh2 93.13
1tzy_A129 Histone H2A-IV; histone-fold, tetramer-dimer-dimer 92.97
1jfi_A98 Transcription regulator NC2 alpha chain; histone, 92.69
1f66_C128 Histone H2A.Z; nucleosome, chromatin, histone vari 92.49
2f8n_K149 Histone H2A type 1; nucleosome, NCP, macroh2A, his 92.46
4g92_C119 HAPE; transcription factor, nucleosome, minor groo 92.26
1id3_C131 Histone H2A.1; nucleosome core particle, chromatin 92.13
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 90.53
2l5a_A235 Histone H3-like centromeric protein CSE4, protein 87.71
2jss_A192 Chimera of histone H2B.1 and histone H2A.Z; histon 87.28
1h3o_B76 Transcription initiation factor TFIID 20/15 kDa su 85.58
2byk_A140 Chrac-16; nucleosome sliding, histone fold, DNA-bi 83.3
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140} Back     alignment and structure
Probab=98.96  E-value=7.7e-10  Score=91.65  Aligned_cols=77  Identities=12%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc-ccc
Q 017508           26 EDFSRAVSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL-KGF  102 (370)
Q Consensus        26 ddf~r~lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~-~gf  102 (370)
                      -+-.+.+-...|..|+++.|+..++..|.+.|.+++..|+.+|+..|..||+|++|++++..||.+||+.+|.+ .||
T Consensus        24 r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lYGf  101 (103)
T 2yfw_B           24 RDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF  101 (103)
T ss_dssp             ------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC------
T ss_pred             hhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCcCC
Confidence            34444577889999999999999999999999999999999999999999999999999999999999999865 344
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ... Back     alignment and structure
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B Back     alignment and structure
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2 Back     alignment and structure
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A Back     alignment and structure
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} Back     alignment and structure
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae} Back     alignment and structure
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T Back     alignment and structure
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A Back     alignment and structure
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3 Back     alignment and structure
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2 Back     alignment and structure
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B Back     alignment and structure
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W Back     alignment and structure
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Back     alignment and structure
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Back     alignment and structure
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Back     alignment and structure
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Back     alignment and structure
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Back     alignment and structure
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Back     alignment and structure
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D* Back     alignment and structure
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ... Back     alignment and structure
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C* Back     alignment and structure
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C Back     alignment and structure
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ... Back     alignment and structure
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1 Back     alignment and structure
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1 Back     alignment and structure
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C* Back     alignment and structure
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1 Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1 Back     alignment and structure
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3 Back     alignment and structure
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d2huec182 Histone H4 {African clawed frog (Xenopus laevis) [ 98.55
d1tafa_68 TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta 98.36
d1htaa_68 Archaeal histone {Archaeon Methanothermus fervidus 98.19
d1ku5a_66 Archaeal histone {Archaeon (Pyrococcus horikoshii) 97.83
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 97.43
d1tafb_70 TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta 97.23
d1n1ja_87 Nuclear transcription factor Y subunit beta (Nf-Yb 97.12
d2bykb189 Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax 96.96
d1f1ea_151 Archaeal histone {Archaeon Methanopyrus kandleri [ 96.82
d1jfib_135 Negative cofactor 2, NC2, beta chain {Human (Homo 96.53
d1tzyc_95 Histone H3 {Chicken (Gallus gallus), erythrocytes 96.1
d1n1jb_78 Nuclear transcription factor Y subunit gamma (Nf-Y 94.17
d1q9ca_172 Histone domain of Son of sevenless protein {Human 93.94
d1jfia_66 Negative cofactor 2, NC2, alpha chain {Human (Homo 93.35
d1h3ob_74 TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom 81.39
d1tzyb_92 Histone H2B {Chicken (Gallus gallus), erythrocytes 81.19
>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.55  E-value=6.9e-08  Score=74.99  Aligned_cols=68  Identities=9%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhcccc
Q 017508           32 VSKMAVAQICESVGFQGFKDSALDALSDIAIRYICDLGKTSSFQANLACRTECNLFDIIRGIEDLEVL   99 (370)
Q Consensus        32 lLr~aVaqIL~~~GF~s~~~sALe~Ltdl~~~YL~~L~~~a~~yAe~agRT~p~~~DV~~AL~~mGi~   99 (370)
                      |-+.+|-.|+++.|...++.++.+.|.+++..|+.++++.+..||+|++|.+.+..||.+||+.+|-+
T Consensus        10 I~k~~i~Riar~~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~p   77 (82)
T d2huec1          10 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT   77 (82)
T ss_dssp             SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEE
T ss_pred             cCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCCC
Confidence            45678899999999999999999999999999999999999999999999999999999999988765
>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Back     information, alignment and structure
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Back     information, alignment and structure