Citrus Sinensis ID: 017518

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
cccccccccccccccccccccccHHHccccccccccccHHHHHccccHHHHHccccccHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHccccccccccEEEEccccccHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEccEEEEEEEEEEEEccccEEEEEEEEEEcccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEEEccccEEEEEEccccEEEEEcccEEEEccccEEccccc
ccccccHHHEccccccccccccccccccccccccEcccHHHccccccEEEEEccccccHHHHHHHcccccccccccccEEEEEEEccccccccccHHHHHHHccccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEcccccccccccEEcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEcccEEEEEEEEEEccccEEEEEEEEEEEccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEEEEEEccccEEEEEccccEEEEEEccccEEHHHcccEccccc
mpfttthlrlisplihpsspsirslvsantkpfrlsassaamdsnsscMLVLSGKSLAENEIAEslksnstlklpdnsevsIHLQSEIVKQESFDVELFMNSLATNRFgrlliwsprlpsthdvvshsfnsnfcelpvgavcvadvqfkgrgrsknawespkgclmfsftiqmedgrvVPLLQYVASLALTEAINYVcsrdglpcldikikwpndlylngikVGGILCTSTYRTKKFNVSIgiglnvnneeptTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGyllaigddnqmcelhpdgnslDFFKGLIRRKLQ
mpfttthlrlisplihpsspsiRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESlksnstlklpdNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGrgrsknawespkGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGiglnvnneepTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
MPFTTTHlrlisplihpsspsirslVSANTKPFRLsassaamdsnssCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
**********************************************************************************HLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLI*****
********RLISPL*********************SASSAAMDSNSSCMLVLSG****************TLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKL*
MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKG********ESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
*PFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIR****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPFTTTHLRLISPLIHPSSPSIRSLVSANTKPFRLSASSAAMDSNSSCMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q920N2722 Biotin--protein ligase OS yes no 0.759 0.389 0.309 5e-38
P50747726 Biotin--protein ligase OS yes no 0.735 0.374 0.295 2e-36
O14353631 Biotin--protein ligase OS yes no 0.808 0.473 0.326 4e-34
P48445690 Biotin--protein ligase OS yes no 0.729 0.391 0.272 4e-22
E0U174325 Bifunctional protein BirA yes no 0.524 0.596 0.302 3e-14
P0CI75325 Bifunctional protein BirA yes no 0.524 0.596 0.307 6e-14
P29906240 Biotin--[acetyl-CoA-carbo yes no 0.513 0.791 0.276 2e-13
P46363302 Bifunctional protein BirA yes no 0.616 0.754 0.265 3e-13
Q5F5C8 592 Bifunctional enzyme BirA/ yes no 0.359 0.224 0.317 9e-11
Q9JXF1 592 Bifunctional enzyme BirA/ yes no 0.256 0.160 0.410 1e-10
>sp|Q920N2|BPL1_MOUSE Biotin--protein ligase OS=Mus musculus GN=Hlcs PE=1 SV=1 Back     alignment and function desciption
 Score =  158 bits (400), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 23/304 (7%)

Query: 78  SEVSIHLQSEIVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELP 137
           S + +    E    E F +E +  +L T R G++++++    +T  +     +    E+P
Sbjct: 431 SSMPVVTDPEAFSSEHFSLETYRQNLQTTRLGKVILFAEVTSTTMSL----LDGLMFEMP 486

Query: 138 --VGAVCVADVQFKGRGRSKNAWESPKGC----LMFSFTIQMEDGRVVPLLQYVASLALT 191
             +G + +A  Q +G+GR  NAW SP GC    L+    ++ + G+ +P +Q++ SLA+ 
Sbjct: 487 QEMGLIAIAVRQTQGKGRGPNAWLSPVGCALSTLLVFIPLRSQLGQRIPFVQHLMSLAVV 546

Query: 192 EAINYVCSRDGLPCLDIKIKWPNDLYLNGI-KVGGILCTSTYRTKKFNVSIGIGLNVNNE 250
           EA+  +    G   +++++KWPND+Y + + K+GG+L  ST   + F + IG G NV N 
Sbjct: 547 EAVRSI---PGYEDINLRVKWPNDIYYSDLMKIGGVLVNSTLMGETFYILIGCGFNVTNS 603

Query: 251 EPTTCLNAVL----RKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTW 306
            PT C+N ++    ++        R + +IA      E   D F +QG   +  LYYK W
Sbjct: 604 NPTICINDLIEEHNKQHGAGLKPLRADCLIARAVTVLEKLIDRFQDQGPDGVLPLYYKYW 663

Query: 307 LHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIR 366
           +H GQ+V +      Q      +I GL  SG+L    +D  +  +HPDGNS D  + LI 
Sbjct: 664 VHGGQQVRLGSTEGPQ-----ASIVGLDDSGFLQVHQEDGGVVTVHPDGNSFDMLRNLIV 718

Query: 367 RKLQ 370
            K Q
Sbjct: 719 PKRQ 722
Post-translational modification of specific protein by attachment of biotin. Acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 4EC: .EC: 1EC: 5
>sp|P50747|BPL1_HUMAN Biotin--protein ligase OS=Homo sapiens GN=HLCS PE=1 SV=1 Back     alignment and function description
>sp|O14353|BPL1_SCHPO Biotin--protein ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bpl1 PE=3 SV=1 Back     alignment and function description
>sp|P48445|BPL1_YEAST Biotin--protein ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BPL1 PE=1 SV=1 Back     alignment and function description
>sp|E0U174|BIRA_BACPZ Bifunctional protein BirA OS=Bacillus subtilis subsp. spizizenii (strain ATCC 23059 / NRRL B-14472 / W23) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P0CI75|BIRA_BACSU Bifunctional protein BirA OS=Bacillus subtilis (strain 168) GN=birA PE=1 SV=1 Back     alignment and function description
>sp|P29906|BIRA_PARDE Biotin--[acetyl-CoA-carboxylase] synthetase OS=Paracoccus denitrificans GN=birA PE=3 SV=1 Back     alignment and function description
>sp|P46363|BIRA_HAEIN Bifunctional protein BirA OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=birA PE=3 SV=1 Back     alignment and function description
>sp|Q5F5C8|BICOA_NEIG1 Bifunctional enzyme BirA/CoaX OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=birA/coaX PE=3 SV=1 Back     alignment and function description
>sp|Q9JXF1|BICOA_NEIMB Bifunctional enzyme BirA/CoaX OS=Neisseria meningitidis serogroup B (strain MC58) GN=birA/coaX PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
357461633361 Holocarboxylase synthetase hcs2 [Medicag 0.940 0.963 0.719 1e-150
224063140333 predicted protein [Populus trichocarpa] 0.878 0.975 0.768 1e-148
302141869416 unnamed protein product [Vitis vinifera] 0.886 0.788 0.760 1e-146
225459465327 PREDICTED: biotin--protein ligase [Vitis 0.878 0.993 0.761 1e-146
356509454361 PREDICTED: biotin--protein ligase-like [ 0.927 0.950 0.701 1e-145
224084846331 predicted protein [Populus trichocarpa] 0.878 0.981 0.740 1e-144
356515850361 PREDICTED: biotin--protein ligase-like [ 0.927 0.950 0.701 1e-143
19698365367 holocarboxylase synthetase 1 [Arabidopsi 0.921 0.929 0.674 1e-141
449465773328 PREDICTED: biotin--protein ligase-like [ 0.875 0.987 0.712 1e-141
18400914367 holocarboxylase synthase 1 [Arabidopsis 0.924 0.931 0.674 1e-141
>gi|357461633|ref|XP_003601098.1| Holocarboxylase synthetase hcs2 [Medicago truncatula] gi|355490146|gb|AES71349.1| Holocarboxylase synthetase hcs2 [Medicago truncatula] Back     alignment and taxonomy information
 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 259/360 (71%), Positives = 300/360 (83%), Gaps = 12/360 (3%)

Query: 18  SSPSIRSLVSANTKP---FRLSASSAAMDSNSSC-MLVLSGKSLAENEIAESLKSNSTLK 73
           +S S  SL+ A T+    + LS  +    S   C +LVL GKSLAENE A ++K+N+TLK
Sbjct: 5   NSASTASLLLATTRRVYNYHLSTYTLMASSAVDCSLLVLCGKSLAENETAIAIKTNNTLK 64

Query: 74  LPDNSEVSIHLQSE----IVKQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSF 129
           LPD  E+SI L SE    +++++SF    FMNSL+TN+FGRLLIWSP L STHDVVSH  
Sbjct: 65  LPDKKELSIILHSEFNKSVIQRQSFQFSSFMNSLSTNQFGRLLIWSPELTSTHDVVSH-- 122

Query: 130 NSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMEDGRVVPLLQYVASLA 189
             NFCELPVG VCV D+Q KGRGRSKNAWESP GCLMFSFT+QMEDGR+VPL+QYV SLA
Sbjct: 123 --NFCELPVGTVCVGDIQNKGRGRSKNAWESPLGCLMFSFTLQMEDGRIVPLVQYVVSLA 180

Query: 190 LTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKFNVSIGIGLNVNN 249
           +TEAI  +C ++GLPC+D+KIKWPNDLYLNG KVGGILCTSTYR+KKFN+S GIGLNVNN
Sbjct: 181 ITEAIKDICDKNGLPCVDVKIKWPNDLYLNGFKVGGILCTSTYRSKKFNISAGIGLNVNN 240

Query: 250 EEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHS 309
           E+PTT LN VLR+LS   YQF+REDV+AAFFNKFE F+D F+NQGFQTLEELYYKTWLHS
Sbjct: 241 EKPTTSLNTVLRELSVGAYQFQREDVLAAFFNKFEKFFDLFLNQGFQTLEELYYKTWLHS 300

Query: 310 GQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSLDFFKGLIRRKL 369
           GQRVIVQEKNE++VVE+ VTIQGLTSSGYLLA+GDDNQMCELHPDGNS DFFKGL+RRKL
Sbjct: 301 GQRVIVQEKNEEKVVEHAVTIQGLTSSGYLLAVGDDNQMCELHPDGNSFDFFKGLVRRKL 360

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224063140|ref|XP_002301010.1| predicted protein [Populus trichocarpa] gi|222842736|gb|EEE80283.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302141869|emb|CBI19072.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459465|ref|XP_002285834.1| PREDICTED: biotin--protein ligase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356509454|ref|XP_003523464.1| PREDICTED: biotin--protein ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|224084846|ref|XP_002307419.1| predicted protein [Populus trichocarpa] gi|222856868|gb|EEE94415.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356515850|ref|XP_003526610.1| PREDICTED: biotin--protein ligase-like [Glycine max] Back     alignment and taxonomy information
>gi|19698365|gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449465773|ref|XP_004150602.1| PREDICTED: biotin--protein ligase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18400914|ref|NP_565605.1| holocarboxylase synthase 1 [Arabidopsis thaliana] gi|30682866|ref|NP_850067.1| holocarboxylase synthase 1 [Arabidopsis thaliana] gi|1688072|gb|AAC49706.1| biotin holocarboxylase synthetase [Arabidopsis thaliana] gi|20197509|gb|AAD31371.2| biotin holocarboxylase synthetase [Arabidopsis thaliana] gi|89000993|gb|ABD59086.1| At2g25710 [Arabidopsis thaliana] gi|330252646|gb|AEC07740.1| holocarboxylase synthase 1 [Arabidopsis thaliana] gi|330252647|gb|AEC07741.1| holocarboxylase synthase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2050291367 HCS1 "holocarboxylase synthase 0.859 0.866 0.694 1.6e-125
TAIR|locus:2029642329 HCS2 "holocarboxylase syntheta 0.859 0.966 0.697 1e-123
DICTYBASE|DDB_G0288791375 hlcs1 "biotin--[acetyl-CoA-car 0.808 0.797 0.370 2.1e-45
UNIPROTKB|F1MJL3732 HLCS "Uncharacterized protein" 0.759 0.383 0.328 5.2e-39
UNIPROTKB|E2RDP8724 HLCS "Uncharacterized protein" 0.721 0.368 0.324 1.3e-37
DICTYBASE|DDB_G0288789375 hlcs2 "biotin--[acetyl-CoA-car 0.786 0.776 0.323 1.5e-37
WB|WBGene000002591215 bpl-1 [Caenorhabditis elegans 0.8 0.243 0.331 1.4e-36
MGI|MGI:894646722 Hlcs "holocarboxylase syntheta 0.759 0.389 0.309 9.5e-36
RGD|1565360723 Hlcs "holocarboxylase syntheta 0.745 0.381 0.311 1.2e-34
UNIPROTKB|E1C4U9712 HLCS "Uncharacterized protein" 0.808 0.419 0.309 2.3e-34
TAIR|locus:2050291 HCS1 "holocarboxylase synthase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
 Identities = 227/327 (69%), Positives = 282/327 (86%)

Query:    48 CMLVLSGKSLAENEIAESLKSNSTLKLPDNSEVSIHLQSE---IVKQE--SFDVELFMNS 102
             C LVL GKS  E E+A+ LK+ ++LKLPDN++VS+ L+SE   +VK +  SF++ LFMNS
Sbjct:    45 CSLVLCGKSSVETEVAKGLKNKNSLKLPDNTKVSLILESEAKNLVKDDDNSFNLSLFMNS 104

Query:   103 LATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPK 162
             + T+RFGR LIWSPRL STHDVVSH    NF ELPVG+VCV D+QFKGRGR+KN WESPK
Sbjct:   105 IITHRFGRFLIWSPRLSSTHDVVSH----NFSELPVGSVCVTDIQFKGRGRTKNVWESPK 160

Query:   163 GCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIK 222
             GCLM+SFT++MEDGRVVPL+QYV SLA+TEA+  VC + GLP +D+KIKWPNDLY+NG+K
Sbjct:   161 GCLMYSFTLEMEDGRVVPLIQYVVSLAVTEAVKDVCDKKGLPYIDVKIKWPNDLYVNGLK 220

Query:   223 VGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTCLNAVLRKLSDSTYQFRREDVIAAFFNK 282
             VGGILCTSTYR+KKFNVS+G+GLNV+N +PTTCLNAVL+ ++  +   +RE+++ AFF+K
Sbjct:   221 VGGILCTSTYRSKKFNVSVGVGLNVDNGQPTTCLNAVLKGMAPESNLLKREEILGAFFHK 280

Query:   283 FETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAI 342
             FE F+D F++QGF++LEELYY+TWLHS QRVIV++K EDQVV+NVVTIQGLTSSGYLLA+
Sbjct:   281 FEKFFDLFMDQGFKSLEELYYRTWLHSEQRVIVEDKVEDQVVQNVVTIQGLTSSGYLLAV 340

Query:   343 GDDNQMCELHPDGNSLDFFKGLIRRKL 369
             GDDNQM ELHPDGNS DFFKGL+RRK+
Sbjct:   341 GDDNQMYELHPDGNSFDFFKGLVRRKI 367
GO:0003824 "catalytic activity" evidence=IEA;ISS
GO:0004077 "biotin-[acetyl-CoA-carboxylase
GO:0005576 "extracellular region" evidence=ISM
GO:0006464 "cellular protein modification process" evidence=IEA;ISS
GO:0005829 "cytosol" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009536 "plastid" evidence=IDA
GO:0015979 "photosynthesis" evidence=RCA
GO:0045333 "cellular respiration" evidence=RCA
GO:0004078 "biotin-[methylcrotonoyl-CoA-carboxylase
GO:0042966 "biotin carboxyl carrier protein biosynthetic process" evidence=IDA
TAIR|locus:2029642 HCS2 "holocarboxylase synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288791 hlcs1 "biotin--[acetyl-CoA-carboxylase] ligase 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1MJL3 HLCS "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDP8 HLCS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288789 hlcs2 "biotin--[acetyl-CoA-carboxylase] ligase 2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
WB|WBGene00000259 bpl-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
MGI|MGI:894646 Hlcs "holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1565360 Hlcs "holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4U9 HLCS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1.181LOW CONFIDENCE prediction!
3rd Layer2.3.1LOW CONFIDENCE prediction!
3rd Layer6.3.4.9LOW CONFIDENCE prediction!
3rd Layer6.3.40.691
3rd Layer6.3.4.15LOW CONFIDENCE prediction!
3rd Layer6.3.4.10LOW CONFIDENCE prediction!
3rd Layer6.3.4.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pm.C_LG_II000406
hypothetical protein (333 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
COG0340238 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) lig 1e-41
TIGR00121237 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-c 6e-29
PRK11886319 PRK11886, PRK11886, bifunctional biotin--[acetyl-C 2e-23
pfam03099124 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B prote 9e-22
PRK08330236 PRK08330, PRK08330, biotin--protein ligase; Provis 2e-19
PRK13325 592 PRK13325, PRK13325, bifunctional biotin--[acetyl-C 3e-12
PRK08477211 PRK08477, PRK08477, biotin--protein ligase; Provis 9e-12
PTZ00276245 PTZ00276, PTZ00276, biotin/lipoate protein ligase; 1e-10
PRK06955300 PRK06955, PRK06955, biotin--protein ligase; Provis 3e-10
PRK05935190 PRK05935, PRK05935, biotin--protein ligase; Provis 3e-08
PTZ00275285 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase 7e-07
>gnl|CDD|223417 COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information 
 Score =  145 bits (368), Expect = 1e-41
 Identities = 69/250 (27%), Positives = 107/250 (42%), Gaps = 17/250 (6%)

Query: 116 PRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKGCLMFSFTIQMED 175
             + ST+        S     P G V VA+ Q  GRGR    W SPKG  ++   +   D
Sbjct: 2   DEIDSTNTEAKERAASGA---PEGTVVVAEEQTAGRGRRGRKWSSPKGGGLYMSLLLRPD 58

Query: 176 GRV--VPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYR 233
                +P L  VA LA+ EA+            D++IKWPND+ LNG K+ GIL  +   
Sbjct: 59  LPPAELPSLSLVAGLAVAEALRKFGI-------DVRIKWPNDVLLNGKKLAGILVEAVGD 111

Query: 234 TK-KFNVSIGIGLNVNNEEPTTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFI 291
                 V +GIG+NVNN  P    +      L +   +  RE+++A    + E +   F+
Sbjct: 112 ENGLLAVVVGIGINVNNPPPDFEDIGQPATSLQEEGEEIDREELLAKLLKELEKYLRQFL 171

Query: 292 NQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSSGYLLAIGDDNQMCEL 351
            +GF  +   +    L  G+ V +       +   +   +G+   G LL   DD ++  +
Sbjct: 172 REGFAPILARWRARSLSLGKEVRLTLGG-GVIFGGIA--KGIDEDGALLLETDDGEVQTI 228

Query: 352 HPDGNSLDFF 361
           +    SL   
Sbjct: 229 YSGEVSLRRA 238

Length = 238
>gnl|CDD|232834 TIGR00121, birA_ligase, birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>gnl|CDD|237010 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>gnl|CDD|217367 pfam03099, BPL_LplA_LipB, Biotin/lipoate A/B protein ligase family Back     alignment and domain information
>gnl|CDD|169384 PRK08330, PRK08330, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|183976 PRK13325, PRK13325, bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>gnl|CDD|236273 PRK08477, PRK08477, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|235896 PRK06955, PRK06955, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|235649 PRK05935, PRK05935, biotin--protein ligase; Provisional Back     alignment and domain information
>gnl|CDD|185536 PTZ00275, PTZ00275, biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG1536649 consensus Biotin holocarboxylase synthetase/biotin 100.0
PRK06955300 biotin--protein ligase; Provisional 100.0
TIGR00121237 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] 100.0
COG0340238 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenz 100.0
PRK08330236 biotin--protein ligase; Provisional 100.0
PRK11886319 bifunctional biotin--[acetyl-CoA-carboxylase] synt 100.0
PTZ00275285 biotin-acetyl-CoA-carboxylase ligase; Provisional 100.0
PRK13325 592 bifunctional biotin--[acetyl-CoA-carboxylase] liga 100.0
PTZ00276245 biotin/lipoate protein ligase; Provisional 100.0
PRK08477211 biotin--protein ligase; Provisional 100.0
PRK05935190 biotin--protein ligase; Provisional 100.0
PF03099125 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase f 99.87
PF0223748 BPL_C: Biotin protein ligase C terminal domain; In 98.57
PRK14348221 lipoate-protein ligase B; Provisional 93.38
TIGR00545324 lipoyltrans lipoyltransferase and lipoate-protein 91.64
PRK14342213 lipoate-protein ligase B; Provisional 89.27
TIGR00214184 lipB lipoate-protein ligase B. Involved in lipoate 88.61
COG0095248 LplA Lipoate-protein ligase A [Coenzyme metabolism 87.2
PRK14345234 lipoate-protein ligase B; Provisional 84.66
PRK14344223 lipoate-protein ligase B; Provisional 84.57
PRK14061562 unknown domain/lipoate-protein ligase A fusion pro 83.98
PRK14343235 lipoate-protein ligase B; Provisional 80.26
>KOG1536 consensus Biotin holocarboxylase synthetase/biotin-protein ligase [Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-62  Score=487.98  Aligned_cols=333  Identities=50%  Similarity=0.860  Sum_probs=287.0

Q ss_pred             hhhhccccccc---ccccccc--cCccccceEEEecCChhHHHH-------HHhhccCCC-cCCCCCC-ceeEEeccccc
Q 017518           24 SLVSANTKPFR---LSASSAA--MDSNSSCMLVLSGKSLAENEI-------AESLKSNST-LKLPDNS-EVSIHLQSEIV   89 (370)
Q Consensus        24 ~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~-~~~~~~~~~~~   89 (370)
                      .++..+.+++.   ..+..+.  .++...|++++|+.++++.|+       ++.+.++++ ++.||++ ++.|.+.+|..
T Consensus       281 ~~~~~n~~~~~r~~~k~~a~~l~~d~k~~~sl~~~~~~s~~tei~d~~~~~~~~ld~s~~~~k~~D~s~k~~i~~~~E~d  360 (649)
T KOG1536|consen  281 ILLFRNLKPLKRLSEKLLASALECDSKASCSLVLCGFSSAETEIKDTNKEFLKGLDNSNSKLKSPDNSVKFVIILGSEED  360 (649)
T ss_pred             hhhhcccchHHHHHHHHHHhhhccccccCceeEEeeccccchhhhhhHHHHHHhhhhhhhhccCCCcceeEEEEeccccc
Confidence            46677766654   3344443  334589999999999999998       888877766 9999998 99999988763


Q ss_pred             -----cCCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHhccccccCCCC--ceeEEEeCcccCcccCCCCeeeccC
Q 017518           90 -----KQESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELP--VGAVCVADVQFKGRGRSKNAWESPK  162 (370)
Q Consensus        90 -----~~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~--~gtvviA~~QTaGRGR~GR~W~Sp~  162 (370)
                           ..+.||.+.|++.|.+++||+.++|.|.++||++.+..    +...+|  .|.+|+|..||+||||.||.|.||.
T Consensus       361 i~~~~~s~nFdl~lY~k~i~tk~~G~~ll~a~V~tST~~ild~----n~s~lpse~g~vvv~~~Q~sGRGRGgN~WlsP~  436 (649)
T KOG1536|consen  361 ILVADDSPNFDLELYFKSINTKRFGRVLLWAPVLTSTMDILDH----NFSELPSEVGLVVVANIQTSGRGRGGNVWLSPK  436 (649)
T ss_pred             cccccCCCCcCHHHHHHHhhhhccCceEEEEeecchHHHHHhh----hhhcCCcccceEEEEeEEeecccCCCCeeecCc
Confidence                 46889999999999999999999999999999999987    445666  8999999999999999999999999


Q ss_pred             CceeEEEeeeccCC----CCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECC-EEEEEEeeeeeecCCcc
Q 017518          163 GCLMFSFTIQMEDG----RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNG-IKVGGILCTSTYRTKKF  237 (370)
Q Consensus       163 G~L~fS~~l~~~~~----~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~g-kKlgGILiE~~~~~~~~  237 (370)
                      |+++||+++.++..    ..++.+++++.+|+.++++.   ..|+|+++++||||||||+++ .||||||+.+.+.++.+
T Consensus       437 G~~~~sf~ism~~ksr~~~~i~~~~~l~~~~~v~~~~~---~pGy~dIpvrIKWPNDlY~~~~lKvgGiLv~st~r~n~f  513 (649)
T KOG1536|consen  437 GCAMSSFTISMPLKSRVVPLIPFVQHLALVAVVEAVRY---APGYPDIPVRIKWPNDLYVNGYLKVGGILVTSTYRSNKF  513 (649)
T ss_pred             ceEeEEEEEEeecccccccchHHHHHHHHHHHHHHHhc---CCCCCCCceeeecCccceeeeccccceEEEEeeecCceE
Confidence            99999999987532    23455566666666666654   468999999999999999999 99999999999999999


Q ss_pred             eEEEEeccCCCCCCCcchHHHHHHhhhcCCC----CCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEE
Q 017518          238 NVSIGIGLNVNNEEPTTCLNAVLRKLSDSTY----QFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRV  313 (370)
Q Consensus       238 ~vvIGIGINvn~~~p~~~l~~~~~~~~~~~~----~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V  313 (370)
                      +++|||||||.+..|++||++.+.++++...    .+.+|+|++.+++.|+.++..|+++|++.++..|+++|+|.+|+|
T Consensus       514 ~v~iGCGiNVtN~~PT~cLN~ll~~~n~e~~~~~l~~k~EkLiA~~~n~fe~~~k~f~d~G~~silp~YYeyWLHS~Q~V  593 (649)
T KOG1536|consen  514 NVSIGCGINVTNDGPTTCLNDLLDEMNEERNLLHLAIKAEKLIAAVFNKFEKYFKLFMDQGPKSILPLYYEYWLHSNQRV  593 (649)
T ss_pred             EEEEeeeeEecCCCCceeHHHHHHhhchhhccccchhhHHHHHHHHHHHHHHHHHHHHhhCHHhHhHHHHHHHhccCcEE
Confidence            9999999999999999999999887765432    458999999999999999999999999999999999999999999


Q ss_pred             EEEECCccEEEEeeEEEEEECCCceEEEEeCC------CcEEEEcCCCeeEEeecCeeeecc
Q 017518          314 IVQEKNEDQVVENVVTIQGLTSSGYLLAIGDD------NQMCELHPDGNSLDFFKGLIRRKL  369 (370)
Q Consensus       314 ~v~~~~~~~~~~~~G~i~GId~~G~L~v~~~d------G~~~~v~~dg~Sfd~~~gli~~k~  369 (370)
                      .+.+.++.      .++.|+|+.|+|+++...      +++++++||||+||||++||++|+
T Consensus       594 ~L~d~~e~------vii~~~dD~G~L~~~~~~~~~~~t~kv~~l~PDGNtFDmmknLI~~K~  649 (649)
T KOG1536|consen  594 ILEDKGEA------VIIGGTDDIGFLQVSGLLLAVGDTNKVYELHPDGNTFDMMKNLIRHKY  649 (649)
T ss_pred             eccCCCcc------eEEeeeecccceeeehhcccCCCCCceEEEcCCCcHHHHHHHhhccCC
Confidence            99877643      357889999999998654      599999999999999999999996

>PRK06955 biotin--protein ligase; Provisional Back     alignment and domain information
>TIGR00121 birA_ligase birA, biotin-[acetyl-CoA-carboxylase] ligase region Back     alignment and domain information
>COG0340 BirA Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism] Back     alignment and domain information
>PRK08330 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK11886 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor; Provisional Back     alignment and domain information
>PTZ00275 biotin-acetyl-CoA-carboxylase ligase; Provisional Back     alignment and domain information
>PRK13325 bifunctional biotin--[acetyl-CoA-carboxylase] ligase/pantothenate kinase; Reviewed Back     alignment and domain information
>PTZ00276 biotin/lipoate protein ligase; Provisional Back     alignment and domain information
>PRK08477 biotin--protein ligase; Provisional Back     alignment and domain information
>PRK05935 biotin--protein ligase; Provisional Back     alignment and domain information
>PF03099 BPL_LplA_LipB: Biotin/lipoate A/B protein ligase family This entry is just a subset of the Pfam family; InterPro: IPR004143 This domain is found in biotin protein ligase, lipoate-protein ligase A and B Back     alignment and domain information
>PF02237 BPL_C: Biotin protein ligase C terminal domain; InterPro: IPR003142 This C-terminal domain has an SH3-like barrel fold, the function of which is unknown Back     alignment and domain information
>PRK14348 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00545 lipoyltrans lipoyltransferase and lipoate-protein ligase Back     alignment and domain information
>PRK14342 lipoate-protein ligase B; Provisional Back     alignment and domain information
>TIGR00214 lipB lipoate-protein ligase B Back     alignment and domain information
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism] Back     alignment and domain information
>PRK14345 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14344 lipoate-protein ligase B; Provisional Back     alignment and domain information
>PRK14061 unknown domain/lipoate-protein ligase A fusion protein; Provisional Back     alignment and domain information
>PRK14343 lipoate-protein ligase B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
1wnl_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 1e-13
2dve_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 2e-13
1wpy_A235 Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase 2e-13
2djz_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 6e-13
2deq_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 7e-13
2dxu_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 1e-12
2dxt_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 1e-12
2e41_A235 Crystal Structure Of Biotin Protein Ligase From Pyr 5e-12
2eay_A233 Crystal Structure Of Biotin Protein Ligase From Aqu 1e-11
1hxd_A321 Crystal Structure Of E. Coli Biotin Repressor With 4e-11
3efs_A233 Biotin Protein Ligase From Aquifex Aeolicus In Comp 2e-10
3efr_A233 Biotin Protein Ligase R40g Mutant From Aquifex Aeol 2e-09
2ej9_A237 Crystal Structure Of Biotin Protein Ligase From Met 9e-08
3rir_A323 Crystal Strucrture Of Biotin Protein Ligase From S. 2e-06
4dq2_A328 Structure Of Staphylococcus Aureus Biotin Protein L 2e-06
3v7r_A329 Crystal Structure Of Staphylococcus Aureus Biotin P 2e-06
3v7c_A329 Cystal Structure Of Sabpl In Complex With Inhibitor 2e-06
3rux_A270 Crystal Structure Of Biotin-Protein Ligase Bira Fro 2e-04
3l1a_A266 Structural Ordering Of Disordered Ligand Binding Lo 2e-04
2cgh_A268 Crystal Structure Of Biotin Ligase From Mycobacteri 3e-04
>pdb|1WNL|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Adp Length = 235 Back     alignment and structure 
Iteration: 1

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 18/157 (11%)
Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
           M  L T+  GR +I+   + ST++    S+      L  G V VAD Q  G GR    WE
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGRLNRKWE 54
Query: 160 SPKGCLMFSFTIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
           SP+G L  S  +  +   + +P + ++ ++ + E +           +D +IKWPND+ +
Sbjct: 55  SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF-------SIDGRIKWPNDVLV 107
Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNEEPTTC 255
           N  K+ G+L       K   + +GIGLNVNN+ P   
Sbjct: 108 NYKKIAGVLVEG----KGDKIVLGIGLNVNNKVPNGA 140
>pdb|2DVE|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, Mutation Arg51ala Length = 235 Back     alignment and structure
>pdb|1WPY|A Chain A, Crystal Structure Of Biotin-(Acetyl-Coa-Carboxylase) Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotin Length = 235 Back     alignment and structure
>pdb|2DJZ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-amp, K111a Mutation Length = 235 Back     alignment and structure
>pdb|2DEQ|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 In Complex With Biotinyl-5'-Amp, K111g Mutation Length = 235 Back     alignment and structure
>pdb|2DXU|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Biotinyl-5'-Amp, Mutation R48a Length = 235 Back     alignment and structure
>pdb|2DXT|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With Atp And Biotin, Mutation D104a Length = 235 Back     alignment and structure
>pdb|2E41|A Chain A, Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed With The Reaction Product Analog Biotinol-5'-Amp, Mutations R48a And K111a Length = 235 Back     alignment and structure
>pdb|2EAY|A Chain A, Crystal Structure Of Biotin Protein Ligase From Aquifex Aeolicus Length = 233 Back     alignment and structure
>pdb|1HXD|A Chain A, Crystal Structure Of E. Coli Biotin Repressor With Bound Biotin Length = 321 Back     alignment and structure
>pdb|3EFS|A Chain A, Biotin Protein Ligase From Aquifex Aeolicus In Complex With Biotin And Atp Length = 233 Back     alignment and structure
>pdb|3EFR|A Chain A, Biotin Protein Ligase R40g Mutant From Aquifex Aeolicus In Complex With Biotin Length = 233 Back     alignment and structure
>pdb|2EJ9|A Chain A, Crystal Structure Of Biotin Protein Ligase From Methanococcus Jannaschii Length = 237 Back     alignment and structure
>pdb|3RIR|A Chain A, Crystal Strucrture Of Biotin Protein Ligase From S. Aureus Length = 323 Back     alignment and structure
>pdb|4DQ2|A Chain A, Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Biotinol-5'-Amp Length = 328 Back     alignment and structure
>pdb|3V7R|A Chain A, Crystal Structure Of Staphylococcus Aureus Biotin Protein Ligase In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|3V7C|A Chain A, Cystal Structure Of Sabpl In Complex With Inhibitor Length = 329 Back     alignment and structure
>pdb|3RUX|A Chain A, Crystal Structure Of Biotin-Protein Ligase Bira From Mycobacterium Tuberculosis In Complex With An Acylsulfamide Bisubstrate Inhibitor Length = 270 Back     alignment and structure
>pdb|3L1A|A Chain A, Structural Ordering Of Disordered Ligand Binding Loops Of Biotin Protein Ligase Into Active Conformations As A Consequence Of Dehydration Length = 266 Back     alignment and structure
>pdb|2CGH|A Chain A, Crystal Structure Of Biotin Ligase From Mycobacterium Tuberculosis Length = 268 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 3e-45
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 5e-42
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 2e-41
1bia_A321 BIRA bifunctional protein; transcription regulatio 3e-39
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 3e-37
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 5e-37
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 7e-27
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Length = 235 Back     alignment and structure
 Score =  154 bits (391), Expect = 3e-45
 Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 33/244 (13%)

Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
           M  L T+  GR +I+   + ST++    S       L  G V VAD Q  G G     WE
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTS------YLEEGTVIVADKQTMGHGALNRKWE 54

Query: 160 SPKGCLMFSFTIQMEDG-RVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYL 218
           SP+G L  S  +  +   + +P + ++ ++ + E +           +D +IKWPND+ +
Sbjct: 55  SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEFS-------IDGRIKWPNDVLV 107

Query: 219 NGIKVGGILCTSTYRTKKFNVSIGIGLNVNNE--EPTTCLNAVLRKLSDSTYQFRREDVI 276
           N  K+ G+L           + +GIGLNVNN+     T +   L        +     V 
Sbjct: 108 NYKKIAGVLVEGKGD----KIVLGIGLNVNNKVPNGATSMKLELGS------EVPLLSVF 157

Query: 277 AAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVVENVVTIQGLTSS 336
            +     +  Y  F+      L  +     L  G RV +     D   E     + +   
Sbjct: 158 RSLITNLDRLYLNFLKNPMDILNLVRDNMIL--GVRVKIL---GDGSFE--GIAEDIDDF 210

Query: 337 GYLL 340
           G L+
Sbjct: 211 GRLI 214
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Length = 233 Back     alignment and structure
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 4dq2_A* Length = 323 Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Length = 321 Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Length = 270 Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Length = 237 Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Length = 235 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
3rkx_A323 Biotin-[acetyl-COA-carboxylase] ligase; biotin pro 100.0
2dxu_A235 Biotin--[acetyl-COA-carboxylase] ligase; biotin bi 100.0
2eay_A233 Biotin [acetyl-COA-carboxylase] ligase; biotin bio 100.0
3rux_A270 BIRA bifunctional protein; biotin-protein ligase, 100.0
2ej9_A237 Putative biotin ligase; biotin biosynthesis, monom 100.0
1bia_A321 BIRA bifunctional protein; transcription regulatio 100.0
3bfm_A235 Biotin protein ligase-like protein of unknown FUN; 100.0
2qhs_A237 Lipoyltransferase; globular protein; HET: OCA; 1.5 98.17
1w66_A232 Lipoyltransferase; lipoate-protein ligase B, lipoi 97.05
2p5i_A288 BH3822 protein; PFAM03099, structural genomics, PS 96.03
2c8m_A262 Lipoate-protein ligase A; lipoylation; HET: LPA; 1 95.96
2p0l_A288 Lipoate-protein ligase A; PFAM, lopoate-protein li 95.47
1vqz_A341 Lipoate-protein ligase, putative; class II AARS an 95.39
2e5a_A347 Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 95.02
3a7r_A337 Lipoate-protein ligase A; adenylate-forming enzyme 94.88
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A* Back     alignment and structure
Probab=100.00  E-value=4.2e-60  Score=463.28  Aligned_cols=254  Identities=18%  Similarity=0.285  Sum_probs=208.2

Q ss_pred             CCCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCC-ceeEEE
Q 017518           91 QESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSF  169 (370)
Q Consensus        91 ~~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G-~L~fS~  169 (370)
                      ++.++++.+...|+|..+|+.++|+++++|||++| +++   ..+.++|++|+|++||+||||+||+|+||+| +||||+
T Consensus        64 ~~~l~~~~i~~~l~~~~~g~~i~~~~~~~STn~~a-~~~---~~g~~~g~vv~A~~QTaGRGR~GR~W~Sp~G~~L~~S~  139 (323)
T 3rkx_A           64 PDIWYQGIIDQYTKSSALFDFSEVYDSIDSTQLAA-KKS---LVGNQSSFFILSDEQTKGRGRFNRHWSSSKGQGLWMSV  139 (323)
T ss_dssp             CSSCCHHHHHHHHHTCSSCSEEEEEEEESCHHHHH-HHH---TTTCCCCEEEEEEEEC------------CTTCEEEEEE
T ss_pred             cccCCHHHHHhhcccccCCceEEEEcCCCCHHHHH-HHH---hcCCCCCEEEEECcccCCCCCCCCeeeCCCCCCEEEEE
Confidence            47799999999999999999999999999999999 643   2457899999999999999999999999999 899999


Q ss_pred             eeecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCcc-eEEEEeccCC
Q 017518          170 TIQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKKF-NVSIGIGLNV  247 (370)
Q Consensus       170 ~l~~~-~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~~-~vvIGIGINv  247 (370)
                      +++|+ ++..++.+++++|+||++||++++      +.+++||||||||++||||||||+|+..+.+.. ++||||||||
T Consensus       140 ~l~p~~~~~~~~~lsl~~avAv~~al~~~~------~~~~~iKWPNDI~~~gkKl~GIL~E~~~~~~~~~~vViGIGiNv  213 (323)
T 3rkx_A          140 VLRPNVAFSMISKFNLFIALGIRDAIQHFS------QDEVKVKWPNDIYIDNGKVCGFLTEMVANNDGIEAIICGIGINL  213 (323)
T ss_dssp             EECCCCCTTSGGGHHHHHHHHHHHHHHTTC------SSCEEEETTTEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEEC
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHHHhc------CCceEEeCCCeEEECCEEEEEEEeEeeeCCCCCCEEEEEEEEEe
Confidence            99876 456788999999999999999874      357999999999999999999999998876654 6899999999


Q ss_pred             CCC---CCcchHHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHhccCCCEEEEEECCccEEE
Q 017518          248 NNE---EPTTCLNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTWLHSGQRVIVQEKNEDQVV  324 (370)
Q Consensus       248 n~~---~p~~~l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~~~~Gq~V~v~~~~~~~~~  324 (370)
                      |+.   .|....+.+++.....+..++|++|++.++++|+.+|+.|.+.||.++.++|++++++.|++|++..+++.  +
T Consensus       214 ~~~~~~~p~~l~~~atsL~~~~g~~~~r~~ll~~ll~~l~~~~~~~~~~g~~~~~~~~~~~~~~~g~~V~v~~~~~~--~  291 (323)
T 3rkx_A          214 TQQLENFDESIRHRATSIQLHDKNKLDRYQFLERLLQEIEKRYNQFLTLPFSEIREEYNAASNIWNRTLLFTENDKQ--F  291 (323)
T ss_dssp             SCCGGGSCTTTGGGBCCSGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHSCGGGTHHHHHHTBSCSSSCEEEECC-CE--E
T ss_pred             cCCcccCCcccCcceeeHhhhhCCCCCHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCEEEEEECCeE--E
Confidence            983   33221111112222346789999999999999999999999999999999999999999999999876543  3


Q ss_pred             EeeEEEEEECCCceEEEEeCCCcEEEEcCCCeeE
Q 017518          325 ENVVTIQGLTSSGYLLAIGDDNQMCELHPDGNSL  358 (370)
Q Consensus       325 ~~~G~i~GId~~G~L~v~~~dG~~~~v~~dg~Sf  358 (370)
                      +  |++.|||++|+|+|++++|+++.+.+|++|+
T Consensus       292 ~--G~~~gId~~G~Llv~~~~G~~~~~~sGevsl  323 (323)
T 3rkx_A          292 K--GQAIDLDYDGYLIVRDEAGESHRLISADIDF  323 (323)
T ss_dssp             E--EEEEEECTTSCEEEEETTSCEEEESSCEEEC
T ss_pred             E--EEEEEECCCCEEEEEECCCCEEEEEEeeEEC
Confidence            4  9999999999999999999999999999874
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ... Back     alignment and structure
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A* Back     alignment and structure
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A Back     alignment and structure
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A* Back     alignment and structure
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP} Back     alignment and structure
>2qhs_A Lipoyltransferase; globular protein; HET: OCA; 1.50A {Thermus thermophilus} PDB: 2qht_A 2qhu_A 2qhv_A Back     alignment and structure
>1w66_A Lipoyltransferase; lipoate-protein ligase B, lipoic acid, acyltransferase, mycobacterium tuberculosis structural proteomics project; HET: DKA; 1.08A {Mycobacterium tuberculosis} SCOP: d.104.1.3 Back     alignment and structure
>2p5i_A BH3822 protein; PFAM03099, structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 2.21A {Bacillus halodurans c-125} SCOP: d.104.1.3 Back     alignment and structure
>2c8m_A Lipoate-protein ligase A; lipoylation; HET: LPA; 1.89A {Thermoplasma acidophilum} SCOP: d.104.1.3 PDB: 2art_A* 2aru_A* 2c7i_A 2ars_A* 3r07_A Back     alignment and structure
>2p0l_A Lipoate-protein ligase A; PFAM, lopoate-protein ligase A, 10425H, structural genomics, structure initiative, PSI-2; 2.04A {Streptococcus agalactiae} SCOP: d.104.1.3 Back     alignment and structure
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3 Back     alignment and structure
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A Back     alignment and structure
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d2zgwa2188 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylas 3e-29
d1biaa3207 d.104.1.2 (A:64-270) Biotin repressor/biotin holoe 7e-18
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  109 bits (273), Expect = 3e-29
 Identities = 50/210 (23%), Positives = 76/210 (36%), Gaps = 25/210 (11%)

Query: 100 MNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWE 159
           M  L T+  GR +I+   + ST++    S+      L  G V VAD Q  G G     WE
Sbjct: 1   MLGLKTSIIGRRVIYFQEITSTNEFAKTSY------LEEGTVIVADKQTMGHGALNRKWE 54

Query: 160 SPKGCLMFSFTIQMEDGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLN 219
           SP+G L  S  +  +  +                            +D +IKWPND+ +N
Sbjct: 55  SPEGGLWLSIVLSPKVPQKDLPKIVFLGAVGVVETLKEF------SIDGRIKWPNDVLVN 108

Query: 220 GIKVGGILCTSTYRTKKFNVSIGIGLNVNNE--EPTTCLNAVLRKLSDSTYQFRREDVIA 277
              + G+L       K   + +GIGLNVNN+     T +   L        +     V  
Sbjct: 109 YKAIAGVLVEG----KGDKIVLGIGLNVNNKVPNGATSMKLELGS------EVPLLSVFR 158

Query: 278 AFFNKFETFYDTFINQGFQTLEELYYKTWL 307
           +     +  Y  F+      L        +
Sbjct: 159 SLITNLDRLYLNFLKNPMDILNL-VRDNMI 187
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Length = 207 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d1biaa3207 Biotin repressor/biotin holoenzyme synthetase, cat 100.0
d2zgwa2188 Biotin--[acetyl-CoA-carboxylase] ligase catalytic 100.0
d1biaa247 Biotin repressor/biotin holoenzyme synthetase, C-t 98.42
d2zgwa147 Biotin--[acetyl-CoA-carboxylase] ligase C-terminal 97.69
d2p0la1269 Lipoate-protein ligase A {Streptococcus agalactiae 96.06
d1vqza2241 LplA-like protein SP1160, N-terminal domain {Strep 95.57
d2p5ia1265 Hypothetical protein BH3822 {Bacillus halodurans [ 95.12
d2c8ma1256 Lipoate-protein ligase A {Thermoplasma acidophilum 94.57
d1x2ga2246 Two-domain LplA, N-terminal domain {Escherichia co 93.57
d1w66a1216 Lipoyltransferase LipB {Mycobacterium tuberculosis 92.54
>d1biaa3 d.104.1.2 (A:64-270) Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Biotin holoenzyme synthetase
domain: Biotin repressor/biotin holoenzyme synthetase, catalytic (central) domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-49  Score=360.57  Aligned_cols=201  Identities=25%  Similarity=0.411  Sum_probs=154.6

Q ss_pred             CCCCHHHHHhhcccccCCceEEEcccCCCHHHHHHhccccccCCCCceeEEEeCcccCcccCCCCeeeccCC-ceeEEEe
Q 017518           92 ESFDVELFMNSLATNRFGRLLIWSPRLPSTHDVVSHSFNSNFCELPVGAVCVADVQFKGRGRSKNAWESPKG-CLMFSFT  170 (370)
Q Consensus        92 ~~f~~~~~~~~L~t~~~g~~l~~~~~v~STN~~a~~~~~~~~~~~~~gtvviA~~QTaGRGR~GR~W~Sp~G-~L~fS~~  170 (370)
                      +.+|.+.+..+|.    +.+++++|+++|||+++++.+    ...++|++|+|++||+||||+||+|.||+| +||||++
T Consensus         2 ~~l~~~~i~~~l~----~~~i~~~~~i~STn~~~~~~~----~~~~~~~vv~A~~QT~GrGR~gr~W~S~~G~~l~~S~~   73 (207)
T d1biaa3           2 QLLNAKQILGQLD----GGSVAVLPVIDSTNQYLLDRI----GELKSGDACIAEYQQAGRGRRGRKWFSPFGANLYLSMF   73 (207)
T ss_dssp             CCCCHHHHHHTCC----SSCEEECSSBSCHHHHHHTTG----GGCCTTCEEEESCBTTC---------CCTTSEEEEEEE
T ss_pred             CcCCHHHHHhhCC----CCcEEEEeccCcHHHHHHHhh----hcCCCCcEEEECccccCCCcCCCccccccccccccccc
Confidence            4588899988884    457999999999999999843    345889999999999999999999999999 5999999


Q ss_pred             eecc-CCCCcchhHHHHHHHHHHHHHHhhhcCCCCCCcceeEecCcEEECCEEEEEEeeeeeecCCc-ceEEEEeccCCC
Q 017518          171 IQME-DGRVVPLLQYVASLALTEAINYVCSRDGLPCLDIKIKWPNDLYLNGIKVGGILCTSTYRTKK-FNVSIGIGLNVN  248 (370)
Q Consensus       171 l~~~-~~~~~~~ls~~~~lAV~~aL~~~~~~~g~~~~~v~IKWPNDI~v~gkKlgGILiE~~~~~~~-~~vvIGIGINvn  248 (370)
                      +++. .....+.+++++|+||+++|+++.      ..+++||||||||++||||||||+|....++. ..+||||||||+
T Consensus        74 ~~~~~~~~~~~~l~~~~~lav~~~l~~~~------~~~~~iKWPNDIl~~~kKi~GIL~E~~~~~~~~~~vviGiGiNv~  147 (207)
T d1biaa3          74 WRLEQGPAAAIGLSLVIGIVMAEVLRKLG------ADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMA  147 (207)
T ss_dssp             EEECC-CCCTHHHHHHHHHHHHHHHHHTT------CTTCEEETTTEEEETTEEEEEEEEEEEC----CEEEEEEEEEECC
T ss_pred             cccccCchhhhhhhhHHHHHHHHHHhhcc------cceeeeeechhhhcCCCccccceEEEEeccCCcceeeeecccccc
Confidence            9876 345678899999999999999874      35799999999999999999999998876554 468999999999


Q ss_pred             CCCCcch-HHHHHHhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHh
Q 017518          249 NEEPTTC-LNAVLRKLSDSTYQFRREDVIAAFFNKFETFYDTFINQGFQTLEELYYKTW  306 (370)
Q Consensus       249 ~~~p~~~-l~~~~~~~~~~~~~~~r~~Ll~~ll~~~~~~~~~~~~~gf~~l~~~y~~~~  306 (370)
                      +..+... ....++.+.+.+..++|+++++.++++|+.+|+.|..+||.+++++|++++
T Consensus       148 ~~~~~~~~~~~~~s~l~~~~~~i~~~~l~~~ll~~l~~~l~~~~~~gf~~~~~~w~~~D  206 (207)
T d1biaa3         148 MRRVEESVVNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLD  206 (207)
T ss_dssp             C-----------CCCTTTTTCCCCHHHHHHHHHHHHHHHHHHHHHHTTGGGHHHHHHHB
T ss_pred             cCCCccccccchhHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence            7543222 222223334556789999999999999999999999999999999999874
>d2zgwa2 d.104.1.2 (A:1-188) Biotin--[acetyl-CoA-carboxylase] ligase catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2p0la1 d.104.1.3 (A:4-272) Lipoate-protein ligase A {Streptococcus agalactiae [TaxId: 1311]} Back     information, alignment and structure
>d1vqza2 d.104.1.3 (A:1-241) LplA-like protein SP1160, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2c8ma1 d.104.1.3 (A:1-256) Lipoate-protein ligase A {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1x2ga2 d.104.1.3 (A:1-246) Two-domain LplA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w66a1 d.104.1.3 (A:1-216) Lipoyltransferase LipB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure