Citrus Sinensis ID: 017519

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL

ccccHHHHHHHHHHHHHHHHHccccccccEEEEEccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHccccccccHHcccccccccccccccccEEcccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEEccccccccEEEccccccccccccEEEEEccccccccccccccccccccc

cHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHcHcEEEEccccccccccEEEEEEEccccccEEEEcccccccccEccEEEEEcccccccccccccccccccccccccccccccHEEEEEcccccccEEEEEEccccEEEEEEccccccccEEEEcccccccccccccEEEEEEEEEEccccccccccHHHHHHccccccHHccccccccEEEEcEEEEEEcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEEcccccccEEEEEEcccccccccEEEEEEcccccccccccccccccccc

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVvnlggrfqgqmggnicgvtyrgpsssccfylcsgqskknyagisrtisssslnvlqpfqatcfspgltkprcnlrpltirsfigsrgsqkrHIEISLACRSMKMrllvpsqgvlpklklnagpidwpkgcasagLICGLLVCYSSskahaeaadekedgeedydlsnvkyshgkkvytdysvigipgdgrCLFRAVAHGAclragkpapsvsIQRELADDLRAKVADEFIKRReetewfiegdfdlyvsqirkphvwggepellmashvlrmpitvymhdkdaggLISIAEYGqeygkekpirVLYHGfghydalqnlgheggiskl

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCfspgltkprcnlRPLTIrsfigsrgsqkrhIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKAHAEAadekedgeedydlsnvkyshgkkvyTDYSVIGIPGDGRCLFRAVAHGACLragkpapsvsiqreLADDLRAKVADEFIkrreetewfiegdfDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALqnlgheggiskl

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSKahaeaadekedgeedydLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL

**NRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYS*********************SNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********

*FNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYR*P********************************************************************************************************************************************************VYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLI**A******GKEKPIRVLYHGFGHYDAL************

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS*****************DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL

MFNRFLVIFSVFYLLLLAVVAGDIDGYANMIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPGLTK**CNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS************************SHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNL*********

iiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		370	2.2.26 [Sep-21-2011]
Q8LBZ4		317	OTU domain-containing pro	yes	no	0.832	0.971	0.483	1e-80
Q6GM06		294	OTU domain-containing pro	N/A	no	0.459	0.578	0.261	6e-09
Q7L8S5		288	OTU domain-containing pro	yes	no	0.348	0.447	0.324	4e-07
Q5M8L0		294	OTU domain-containing pro	yes	no	0.478	0.602	0.242	8e-06
Q8N6M0		293	OTU domain-containing pro	no	no	0.348	0.440	0.273	2e-05
Q7ZV00		293	OTU domain-containing pro	no	no	0.351	0.443	0.296	3e-05
Q96G74		571	OTU domain-containing pro	no	no	0.321	0.208	0.259	4e-05
Q7ZX21		513	OTU domain-containing pro	N/A	no	0.310	0.224	0.253	4e-05
Q640H3		518	OTU domain-containing pro	N/A	no	0.310	0.222	0.253	8e-05
Q2YDU3		566	OTU domain-containing pro	yes	no	0.310	0.203	0.253	0.0001

>sp\|Q8LBZ4\|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1	Back alignment and function desciption

 Score =  300 bits (768), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 215/341 (63%), Gaps = 33/341 (9%)

Query: 30  MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRT 89
           MI  + I  C++N +++    +  +G  + GV   G S   C+ L SG S+++Y G   +
Sbjct: 2   MICYSPITTCSRNAISI----KRHLGSRLYGVVAHGSSKFSCYSLLSGLSRRHYTGFRVS 57

Query: 90  ISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRL 149
           +S+      +P  ++    GL       RP           + K  +E+S       M+ 
Sbjct: 58  VSN------RP--SSWHDKGLFGSVLINRPTV---------APKEKLEVSFLSPEANMKC 100

Query: 150 LVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK--AHAEAADEKEDGEEDYD 207
                    K++ N   +      A  G+I  LLVCYSS+   A+A+++ +K+     + 
Sbjct: 101 --------SKIESNMRNLYCYSRFAYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHH 152

Query: 208 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAK 267
            S+ K+ +GK+VYTDYS+IGIPGDGRCLFR+VAHG CLR+GK AP   +QRELAD+LR +
Sbjct: 153 SSDGKFHNGKRVYTDYSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTR 212

Query: 268 VADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAG 327
           VADEFI+RR+ETEWF+EGDFD YV QIR PHVWGGEPEL MASHVL+MPITVYM D  AG
Sbjct: 213 VADEFIQRRQETEWFVEGDFDTYVRQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAG 272

Query: 328 GLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGIS 368
           GLISIAEYGQEYGK+ PIRVLYHGFGHYDAL  L HE   S
Sbjct: 273 GLISIAEYGQEYGKDDPIRVLYHGFGHYDAL--LLHESKAS 311

Arabidopsis thaliana (taxid: 3702)

>sp\|Q6GM06\|OTU6B_XENLA OTU domain-containing protein 6B OS=Xenopus laevis GN=otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q7L8S5\|OTU6A_HUMAN OTU domain-containing protein 6A OS=Homo sapiens GN=OTUD6A PE=2 SV=1	Back alignment and function description

>sp\|Q5M8L0\|OTU6B_XENTR OTU domain-containing protein 6B OS=Xenopus tropicalis GN=otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q8N6M0\|OTU6B_HUMAN OTU domain-containing protein 6B OS=Homo sapiens GN=OTUD6B PE=1 SV=1	Back alignment and function description

>sp\|Q7ZV00\|OTU6B_DANRE OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1	Back alignment and function description

>sp\|Q96G74\|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1	Back alignment and function description

>sp\|Q7ZX21\|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1	Back alignment and function description

>sp\|Q640H3\|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1	Back alignment and function description

>sp\|Q2YDU3\|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		370
359481937		340	PREDICTED: OTU domain-containing protein	0.910	0.991	0.636	1e-123
255587443		343	cysteine-type peptidase, putative [Ricin	0.918	0.991	0.595	1e-112
224139840		319	predicted protein [Populus trichocarpa]	0.854	0.990	0.618	1e-108
147779061		806	hypothetical protein VITISV_002512 [Viti	0.710	0.326	0.701	1e-107
363806736		339	uncharacterized protein LOC100810338 [Gl	0.875	0.955	0.601	3e-99
449437605		286	PREDICTED: OTU domain-containing protein	0.754	0.975	0.548	4e-90
224120200		223	predicted protein [Populus trichocarpa]	0.581	0.964	0.703	3e-85
297817112		313	hypothetical protein ARALYDRAFT_486235 [	0.816	0.964	0.495	2e-81
30694718		317	Cysteine proteinases-like protein [Arabi	0.832	0.971	0.483	8e-79
297739716		189	unnamed protein product [Vitis vinifera]	0.5	0.978	0.752	1e-77

>gi\|359481937\|ref\|XP_003632695.1\| PREDICTED: OTU domain-containing protein At3g57810-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/344 (63%), Positives = 262/344 (76%), Gaps = 7/344 (2%)

Query: 30  MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSK--KNYAGIS 87
           MI    I  CA+N+V L G  Q QM  +IC +  +GPSSS  FY  +G SK    +  +S
Sbjct: 1   MINCYPISTCARNIVRLSGCVQRQMSSHICSLVSQGPSSSFSFYFYTGHSKPKNTFMSVS 60

Query: 88  RTISSSSLNVLQPFQATCFSPGLTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKM 147
            T S SS+     FQ +CF  GL+K R + R LT++S IGSRG  KR + ISL C++M +
Sbjct: 61  ETFSCSSITAFHTFQGSCFYSGLSKRRGSSRSLTVKSLIGSRGPSKRSLNISLTCQNMNV 120

Query: 148 RLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSSK-AHAEAADEKEDGEEDY 206
           RLLVP QGVLPK+K N G + WP+GCASAGL+  LLVCYSSS+  HAE+A +KED + + 
Sbjct: 121 RLLVPKQGVLPKIKCNVGSVSWPQGCASAGLMFALLVCYSSSEPVHAESAQKKEDKKGEC 180

Query: 207 DLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRA 266
             +    SHGKKVYTDYS+ GIPGDGRCLFR+V HGACLR+GKPAPS S QRELAD+LRA
Sbjct: 181 YTN----SHGKKVYTDYSITGIPGDGRCLFRSVVHGACLRSGKPAPSASCQRELADELRA 236

Query: 267 KVADEFIKRREETEWFIEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDA 326
           +V DEFI+RR ETEWFIEGDFD YVSQ+RKPHVWGGEPEL MASHVL+MPITVYM+DKD+
Sbjct: 237 EVVDEFIRRRSETEWFIEGDFDTYVSQMRKPHVWGGEPELFMASHVLQMPITVYMYDKDS 296

Query: 327 GGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGHEGGISKL 370
           GGLI+IAEYGQEYGKE PIRVLYHGFGHY++LQ  G +G  S+L
Sbjct: 297 GGLIAIAEYGQEYGKENPIRVLYHGFGHYESLQIPGKKGAKSRL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255587443\|ref\|XP_002534273.1\| cysteine-type peptidase, putative [Ricinus communis] gi\|223525596\|gb\|EEF28110.1\| cysteine-type peptidase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224139840\|ref\|XP_002323302.1\| predicted protein [Populus trichocarpa] gi\|222867932\|gb\|EEF05063.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|147779061\|emb\|CAN60311.1\| hypothetical protein VITISV_002512 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|363806736\|ref\|NP_001242273.1\| uncharacterized protein LOC100810338 [Glycine max] gi\|255645865\|gb\|ACU23423.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449437605\|ref\|XP_004136582.1\| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi\|449522883\|ref\|XP_004168455.1\| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224120200\|ref\|XP_002330989.1\| predicted protein [Populus trichocarpa] gi\|222872919\|gb\|EEF10050.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|297817112\|ref\|XP_002876439.1\| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata] gi\|297322277\|gb\|EFH52698.1\| hypothetical protein ARALYDRAFT_486235 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|30694718|ref|NP_850716.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|145332883|ref|NP_001078307.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|75155093|sp|Q8LBZ4.1|OTU_ARATH RecName: Full=OTU domain-containing protein At3g57810 gi|21555880|gb|AAM63953.1| unknown [Arabidopsis thaliana] gi|109946583|gb|ABG48470.1| At3g57810 [Arabidopsis thaliana] gi|332646184|gb|AEE79705.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|332646185|gb|AEE79706.1| Cysteine proteinases-like protein [Arabidopsis thaliana] gi|407078834|gb|AFS88948.1| deubiquitinating enzyme OTU4 isoform ia [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297739716\|emb\|CBI29898.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		370
TAIR\|locus:2095748		317	AT3G57810 "AT3G57810" [Arabido	0.521	0.608	0.675	1.1e-74
TAIR\|locus:504955906		234	AT2G38025 "AT2G38025" [Arabido	0.405	0.641	0.344	9.2e-15
ZFIN\|ZDB-GENE-040426-974		293	otud6b "OTU domain containing	0.340	0.430	0.304	3.2e-07
MGI\|MGI:1919451		294	Otud6b "OTU domain containing	0.337	0.425	0.288	2.8e-05
CGD\|CAL0002605		323	orf19.1959 [Candida albicans (	0.345	0.396	0.283	0.00017
MGI\|MGI:3644685		290	Otud6a "OTU domain containing	0.351	0.448	0.298	0.00022
UNIPROTKB\|Q96G74		571	OTUD5 "OTU domain-containing p	0.321	0.208	0.259	0.00033
TAIR\|locus:2099172		332	AT3G62940 [Arabidopsis thalian	0.348	0.388	0.295	0.00038
DICTYBASE\|DDB_G0285907		537	DDB_G0285907 "OTU domain conta	0.313	0.216	0.305	0.00039
DICTYBASE\|DDB_G0267906		438	DDB_G0267906 "OTU domain conta	0.324	0.273	0.270	0.00048

TAIR\|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 685 (246.2 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 133/197 (67%), Positives = 150/197 (76%)

Query:   174 ASAGLICGLLVCYSSSKXXXXXXXXXXXXXXXXX--LSNVKYSHGKKVYTDYSVIGIPGD 231
             A  G+I  LLVCYSS+                     S+ K+ +GK+VYTDYS+IGIPGD
Sbjct:   117 AYTGVIVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTDYSIIGIPGD 176

Query:   232 GRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLYV 291
             GRCLFR+VAHG CLR+GK AP   +QRELAD+LR +VADEFI+RR+ETEWF+EGDFD YV
Sbjct:   177 GRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRVADEFIQRRQETEWFVEGDFDTYV 236

Query:   292 SQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHG 351
              QIR PHVWGGEPEL MASHVL+MPITVYM D  AGGLISIAEYGQEYGK+ PIRVLYHG
Sbjct:   237 RQIRDPHVWGGEPELFMASHVLQMPITVYMKDDKAGGLISIAEYGQEYGKDDPIRVLYHG 296

Query:   352 FGHYDALQNLGHEGGIS 368
             FGHYDAL  L HE   S
Sbjct:   297 FGHYDAL--LLHESKAS 311

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR\|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-974 otud6b "OTU domain containing 6B" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:1919451 Otud6b "OTU domain containing 6B" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

CGD\|CAL0002605 orf19.1959 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

MGI\|MGI:3644685 Otud6a "OTU domain containing 6A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96G74 OTUD5 "OTU domain-containing protein 5" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

TAIR\|locus:2099172 AT3G62940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBZ4	OTU_ARATH	No assigned EC number	0.4838	0.8324	0.9716	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00160441	hypothetical protein (319 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		370
pfam02338		123	pfam02338, OTU, OTU-like cysteine protease	2e-25
COG5539		306	COG5539, COG5539, Predicted cysteine protease (OTU	2e-05

>gnl\|CDD\|216981 pfam02338, OTU, OTU-like cysteine protease	Back alignment and domain information

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 14/132 (10%)

Query: 229 PGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFD 288
           PGDG CLF AV+              + ++EL D+LR  V +   + RE+ E F+E D +
Sbjct: 1   PGDGNCLFHAVSDQLGD---------AGRQELHDELREAVVEYLRENREDFEKFLEEDEN 51

Query: 289 LYVSQIRKPHVWGGEPELLMASHVLRMPITVYM-HDKDAGGLISIAEYGQEYGKEKPIRV 347
            Y   I K   WGG  E+   +H+LR+PI VY          I I        K+  IR+
Sbjct: 52  EYYKWISKDGAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRL 111

Query: 348 LYHGF----GHY 355
            Y G      HY
Sbjct: 112 SYLGLEYTGNHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

>gnl\|CDD\|227826 COG5539, COG5539, Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		370
KOG2606		302	consensus OTU (ovarian tumor)-like cysteine protea	99.97
PF02338		121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.89
KOG3288		307	consensus OTU-like cysteine protease [Signal trans	99.68
PF10275		244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.5
KOG3991		256	consensus Uncharacterized conserved protein [Funct	99.32
KOG2605		371	consensus OTU (ovarian tumor)-like cysteine protea	99.31
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	98.97
COG5539		306	Predicted cysteine protease (OTU family) [Posttran	98.59
PF05415		104	Peptidase_C36: Beet necrotic yellow vein furovirus	88.85

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=99.97  E-value=5e-34  Score=274.82  Aligned_cols=292  Identities=27%  Similarity=0.303  Sum_probs=201.3

Q ss_pred             eEEeeeccccccceEEecccccccccceeeeeeecCCCceeeeecccCcccccccceeEEeecCCccccccccccccccc
Q 017519           30 MIVSTSICACAKNVVNLGGRFQGQMGGNICGVTYRGPSSSCCFYLCSGQSKKNYAGISRTISSSSLNVLQPFQATCFSPG  109 (370)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  109 (370)
                      |++..++..|.+|...|.    +|-+.+-......+..+..|.+.. ++.|+.|.+....++.   -+-|++++.++++.
T Consensus         2 ~~~~~~~~~~~~~e~iLa----RHr~E~keLq~ki~~mKk~a~k~~-k~~rK~~~~~~~~le~---el~qkH~kEL~~~~   73 (302)
T KOG2606|consen    2 MTCMDSEQDEESNEEILA----RHRRERKELQAKITSMKKAAPKGN-KKKRKELTEDIAKLEK---ELSQKHKKELEKLK   73 (302)
T ss_pred             cCCccchhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHHh---HHHHHHHHHHHhhc
Confidence            678889999999998898    999999999999999999998887 8999999985544544   24579999999999


Q ss_pred             cccCCCCCCCcceeeeeecccccceeeeeeecccceeeeecccCCCcccccccCcccccCCCCCCcccceeeeeeecCcc
Q 017519          110 LTKPRCNLRPLTIRSFIGSRGSQKRHIEISLACRSMKMRLLVPSQGVLPKLKLNAGPIDWPKGCASAGLICGLLVCYSSS  189 (370)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~k~~~~~~~~~s~~~~n~~~~~~~~~~~~~~~~~g~~~~~~~~  189 (370)
                      +...              +...++....-|+..+..+|.++-  .+-.+. ..+.+.-|-.-+-...+...--.++.+++
T Consensus        74 ~~~~--------------~e~~~~e~~~~s~l~~~a~~~~~~--~ee~P~-~sKa~k~r~k~r~e~r~~e~~~~~e~~~~  136 (302)
T KOG2606|consen   74 LINE--------------SEVTPKENLIESVLSPIANMSLEN--KEETPR-QSKARKRREKKRKEERKREAEKIAEEESL  136 (302)
T ss_pred             ccCc--------------cccCccccchhhhhcccccccccc--cccCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9887              456667778888888888876432  110000 01111111111222222111122332221


Q ss_pred             cchhhccccccCCCCcccchhhccccccccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHH
Q 017519          190 KAHAEAADEKEDGEEDYDLSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVA  269 (370)
Q Consensus       190 ~~~a~~~~~~~~~~~~~~~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vv  269 (370)
                      + +  .+.      .+.++. .+ .....-.+||.+.+||+||+|||+||+|||..+++...+.+.+|++.+++||.++.
T Consensus       137 ~-~--~~~------~k~~E~-~k-~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~  205 (302)
T KOG2606|consen  137 S-N--QAD------AKSMEK-EK-LAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVE  205 (302)
T ss_pred             h-c--CCc------hhhhHH-HH-HHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            0 0  000      111111 11 23334458899999999999999999999999877666656666666666666654


Q ss_pred             HHHhcChhhhcccccc--CHHHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEE
Q 017519          270 DEFIKRREETEWFIEG--DFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRV  347 (370)
Q Consensus       270 dy~~~nrddfe~FIe~--dfdeY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L  347 (370)
                      |++--..++.++++.+  +|++||++|++++.|||+|||.|||++|++||+||+.+    +.  +.+||++|.+++||.|
T Consensus       206 df~pf~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~----~p--~~~~geey~kd~pL~l  279 (302)
T KOG2606|consen  206 DFLPFLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD----GP--ILEYGEEYGKDKPLIL  279 (302)
T ss_pred             HhhhHhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC----CC--ceeechhhCCCCCeee
Confidence            4332222333344433  79999999999999999999999999999999999975    22  5789999988899999


Q ss_pred             EEc----CCC-ceeeeecCCC
Q 017519          348 LYH----GFG-HYDALQNLGH  363 (370)
Q Consensus       348 ~Yh----g~g-HYDSL~~~~~  363 (370)
                      +||    +.| ||||+.++.+
T Consensus       280 vY~rH~y~LGeHYNS~~~~~n  300 (302)
T KOG2606|consen  280 VYHRHAYGLGEHYNSVTPLKN  300 (302)
T ss_pred             ehHHhHHHHHhhhcccccccc
Confidence            996    334 9999986543

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae	Back alignment and domain information

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		370
3tmp_A		184	The Catalytic Domain Of Human Deubiquitinase Duba I		1e-06
3tmo_A		184	The Catalytic Domain Of Human Deubiquitinase Duba L		2e-05
3pfy_A		185	The Catalytic Domain Of Human Otud5 Length = 185		7e-05

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Back alignment and structure

Iteration: 1

Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 12/131 (9%) Query: 231 DGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDFDLY 290 DG CLFRAVA V +++ + +R D +K + ++ DF Y Sbjct: 54 DGACLFRAVA-----------DQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTY 102 Query: 291 VSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEY-GQEYGKEKPIRVLY 349 +++ RK + G E+ + + P+ VY + + I + G +++PIRV Y Sbjct: 103 INRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSY 162 Query: 350 HGFGHYDALQN 360 H HY+++ N Sbjct: 163 HRNIHYNSVVN 173

PyMOL of 3tmp

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Back alignment and structure

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		370
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-37
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	6e-34
3pfy_A		185	OTU domain-containing protein 5; structural genomi	4e-31
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	6e-27
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	3e-08
3zrh_A		454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	1e-04
3dkb_A		390	Tumor necrosis factor, alpha-induced protein 3; OT	9e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185	Back alignment and structure

 Score =  132 bits (334), Expect = 1e-37
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 9/147 (6%)

Query: 223 YSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWF 282
           + ++  PGDG C + ++A        K   S    + L +    K   E     E     
Sbjct: 31  FEIVRQPGDGNCFYHSIAE--LTMPNKTDHSYHYIKRLTESAARKYYQE-----EPEARL 83

Query: 283 IEGDFDLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKE 342
           +    + Y+ ++   + WG   E  M +  + + I ++        + +  ++G      
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAAS-DEVEAGIKFGDGDVF- 141

Query: 343 KPIRVLYHGFGHYDALQNLGHEGGISK 369
             + +L+ G  H+DAL+ L      ++
Sbjct: 142 TAVNLLHSGQTHFDALRILPQFETDTR 168

PyMOL of 3phx

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219	Back alignment and structure

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185	Back alignment and structure

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234	Back alignment and structure

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens} Length = 454	Back alignment and structure

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A Length = 390	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		370
3pfy_A		185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A		212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.97
3phx_A		185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
3phu_A		219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A		234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.87
4dhi_B		284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.79
4ddg_A		399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.78
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	99.76
3dkb_A		390	Tumor necrosis factor, alpha-induced protein 3; OT	98.38
3zrh_A		454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	97.99
2zfy_A		234	Ubiquitin thioesterase OTUB1; otubain, structural	96.07

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*	Back alignment and structure

Probab=100.00  E-value=3.4e-35  Score=267.22  Aligned_cols=141  Identities=23%  Similarity=0.406  Sum_probs=103.0

Q ss_pred             chhhccccccccccCcEEEeeCCCCchHhHHHHHhhhhcCCCCCCChhHHHHHHHHHHHHHHHHHhcChhhhccccccCH
Q 017519          208 LSNVKYSHGKKVYTDYSVIGIPGDGRCLFRAVAHGACLRAGKPAPSVSIQRELADDLRAKVADEFIKRREETEWFIEGDF  287 (370)
Q Consensus       208 ~~~~~~~~g~~~~~gL~I~~IpGDGNCLFRAVAhQL~~~sG~~~~~~~lrr~~h~~LR~~vvdy~~~nrddfe~FIe~df  287 (370)
                      +++..|...+....||++++||+||||||||||+||+.   .        ++.|.+||+.+++||.+|+++|++|++++|
T Consensus        44 ~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g---~--------~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~  112 (185)
T 3pfy_A           44 QQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYG---D--------QDMHEVVRKHCMDYLMKNADYFSNYVTEDF  112 (185)
T ss_dssp             HHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHS---C--------GGGHHHHHHHHHHHHHHTHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhC---C--------chHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            44556777777779999999999999999999999983   2        245899999999999999999999999999


Q ss_pred             HHHHHhhcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCCCCCCCCeEEEEEcCCCceeeeecCCC
Q 017519          288 DLYVSQIRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDALQNLGH  363 (370)
Q Consensus       288 deY~~~M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~e~~~~~pI~L~Yhg~gHYDSL~~~~~  363 (370)
                      ++||++|+++++|||++||+|||++|+++|.||+.+.   ..+.+. .|.+....++|+|+||+.+|||||+.|.+
T Consensus       113 e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~---~~i~i~-~g~~~~~~~~I~L~Y~~~~HYnSv~~p~~  184 (185)
T 3pfy_A          113 TTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST---EPINTF-HGIHQNEDEPIRVSYHRNIHYNSVVNPNK  184 (185)
T ss_dssp             -------------CCHHHHHHHHHHHTSCEEEESSCS---SCSEEE-CTTSCCTTSCEEEEEETTTEEEEEECC--
T ss_pred             HHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCC---CCeEEe-cCccCCCCCEEEEEECCCCCcccccCCCC
Confidence            9999999999999999999999999999999998752   233332 24444457899999998889999998764

PyMOL of 3pfy

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A	Back alignment and structure

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A	Back alignment and structure

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}	Back alignment and structure

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11	Back alignment and structure

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A	Back alignment and structure

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A	Back alignment and structure

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A	Back alignment and structure

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}	Back alignment and structure

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		370
d1tffa_		228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	3e-13

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 3e-13
 Identities = 15/98 (15%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 264 LRAKVADEFIKRREETEWFIEGDFDL---YVSQIRKPHVWGGEPELLMASHVLRMPITVY 320
           LR   +     R +    FI+ + D+      ++          ++   S  L + + V 
Sbjct: 129 LRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVE 188

Query: 321 MHDKDAGGLISIAEYGQEYGKEKPIRVLYHGFGHYDAL 358
             D+       +  +         + +LY    HY+ L
Sbjct: 189 YVDEMDTA---LNHHVFPEAATPSVYLLYKT-SHYNIL 222

PyMOL of d1tffa_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		370
d1tffa_		228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.82

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.6e-20  Score=167.74  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhcChhhhcccccc--CHHHHHHh-hcCCCCcCChHHHHHHHHhcCCCEEEEeecCCCCCceEEEEcCC
Q 017519          261 ADDLRAKVADEFIKRREETEWFIEG--DFDLYVSQ-IRKPHVWGGEPELLMASHVLRMPITVYMHDKDAGGLISIAEYGQ  337 (370)
Q Consensus       261 h~~LR~~vvdy~~~nrddfe~FIe~--dfdeY~~~-M~k~gtWGGelEL~ALA~ll~v~I~Vy~~d~~s~G~i~I~efG~  337 (370)
                      ...+|..++.+|..|+++|++|+++  ++++||.+ |.++++|||++||.|||++|+++|+|+..+.+. +.+....+++
T Consensus       126 v~~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~-~~~~~~~~~~  204 (228)
T d1tffa_         126 VQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMD-TALNHHVFPE  204 (228)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC--------CCCCCC
T ss_pred             HHHHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCC-CccccccCCC
Confidence            3468999999999999999999965  69999985 899999999999999999999999999887553 3333334433


Q ss_pred             CCCCCCeEEEEEcCCCceeeeecCC
Q 017519          338 EYGKEKPIRVLYHGFGHYDALQNLG  362 (370)
Q Consensus       338 e~~~~~pI~L~Yhg~gHYDSL~~~~  362 (370)
                      +  ..++|+|+|.+ ||||.|+..+
T Consensus       205 ~--~~~~I~Lly~p-gHYdiLY~~~  226 (228)
T d1tffa_         205 A--ATPSVYLLYKT-SHYNILYAAD  226 (228)
T ss_dssp             C--SSCSEEEEEET-TEEEEEEECC
T ss_pred             C--CCCEEEEEeCC-CCcccCccCC
Confidence            2  45789999987 5999998654

PyMOL of d1tffa_