Citrus Sinensis ID: 017520

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHcccEEEEcccccccccEEEcccccEEEEccccEEEEEEcccEEEEEEEcccccccEEEcccccEEEEEccccEEEEEcccEEEEEEEEccEEEEccccEEEcccccEEEEccccccccccccccccccccccEEEEEcccccEEEEEccccccccEEEEcccccEEEEEEcccEEEEEEEcccccccEEEEEccccccccEEEcccccEEEEEEEcccccccccccHHHHHHHHHccccccEEEEEccccEEEEEEcccccEEEEEEccccccccccEEEEEEccEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEccccccEEEEcccccEEEEEccccEEEEcccccEEEEEccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEccccccEEEEEcccEccccEEEcccccEEEEEEcHHHEEEEEcccccccEEEEHcccccccccccccccccEEEEEEccccHHHHHHcccHHHHHHHHHcccHccccccccccEEEEEEcccccEEEEEEcccccEEEEEEEEEEEccEEEEEEcccccEEEEEcc
Coil and Loop (DISEMBL)
maptrktepetskkgrtssklfvpacySFGFLLVCLIAFLLQIVyfspispvldevpqpavlsaTQLQDFikvgegsvnhpedasmdkngvIYTATRDGWikrlqdgtwvnwkfidsqtlvgltstkeghLIICdnanglhkvseDGVENFLSYVNGSklrfandvveasdgslyftvssskylpheycldilegkphgqllkydpssnittlvADGFYFangvalsrdedYVVVCESWKCRkywlkgerkgkletfaenlpgapdninlapdgTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLgggahlihvaedgtiirnlvdptgqLMSFVTSGLQVDNHLYVISLTSnfigkvqls
Flexible Loop (DISEMBL)
maptrktepetskkgrtssklfVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEgsvnhpedasmdknGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRkywlkgerkgKLETFAENLpgapdninlapdGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLtsnfigkvqls
Low Complexity Region (SEG)
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered region (IsUnstruct)
********************LFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGE************KNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK****
Disordered Region (DISOPRED)
*************************CYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered Region (DISEMBL)
*****************SSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Disordered Region (DISPRO)
****************TSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPTRKTEPETSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.913	0.898	0.303	1e-33
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.902	0.810	0.293	4e-33
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.956	0.853	0.291	4e-33
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.970	0.865	0.286	1e-30
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.859	0.764	0.292	5e-30
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.956	0.850	0.283	9e-30
Q803F5	415	Adipocyte plasma membrane	no	no	0.864	0.771	0.266	2e-24
P94111	335	Strictosidine synthase 1	no	no	0.467	0.516	0.284	2e-15
P92976	329	Strictosidine synthase 3	no	no	0.421	0.474	0.312	3e-15
P68175	344	Strictosidine synthase OS	N/A	no	0.529	0.569	0.266	5e-09

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 189/376 (50%), Gaps = 38/376 (10%)

Query: 28  SFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVLSA-----TQLQDFIKVGEGSVNH 80
           +F  L V L   LL   ++  SPI P      +P  +       T+L+   ++ E  +N 
Sbjct: 2   TFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVLQPNTKLRQAERLFENQLNG 61

Query: 81  PEDASMDKNGVIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKE 128
           PE + ++   V++T T DG + +L++G   T   +     K  D +      +G+     
Sbjct: 62  PE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGRPLGIRVGPN 120

Query: 129 GHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSK 182
           G L + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +YFT SSSK
Sbjct: 121 GTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKIYFTDSSSK 180

Query: 183 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WK 240
           +   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+V E+   +
Sbjct: 181 WQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETAMAR 240

Query: 241 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKL 296
            R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +  L+    
Sbjct: 241 IRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPF 300

Query: 297 IKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNH 353
           IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+   + D +
Sbjct: 301 IKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGY 357

Query: 354 LYVISLTSNFIGKVQL 369
           LY+ S  S FI ++ L
Sbjct: 358 LYLGSFRSPFICRLSL 373

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Rattus norvegicus (taxid: 10116)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 109/372 (29%), Positives = 189/372 (50%), Gaps = 38/372 (10%)

Query: 30  GFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL-----SATQLQDFIKVGEGSVNHPEDA 84
            FL + L+  L  ++  SPI P      +P +        T+LQ   ++ E  +  PE  
Sbjct: 47  AFLTIPLLGAL--VLLDSPIDPEPLSFKEPPLFLGVLQPNTKLQQAERLFENQLVGPESI 104

Query: 85  SMDKNGVIYTATRDGWIKRLQDG---TWVNW-----KFIDSQTL----VGLTSTKEGHLI 132
           + +   V++T T DG + +L++G   T   +     K  D +      +G+ +   G L 
Sbjct: 105 A-NIGDVMFTGTADGRVVKLENGEVETIARFGSGPCKTRDDEPACGRPLGIRAGPNGTLF 163

Query: 133 ICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPH 186
           + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +YFT SSSK+   
Sbjct: 164 VVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKIYFTDSSSKWQRR 223

Query: 187 EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE--SWKCRKY 244
           +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+V E    + R++
Sbjct: 224 DYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVLVVELAMVRIRRF 283

Query: 245 WLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHV 300
           ++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +  L+    +K V
Sbjct: 284 YVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSMLDFLSERPFLKKV 343

Query: 301 LAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI 357
           +    KLFSQ   +        ++ +++ GT +R+L DP GQ++++V+   +   HLY+ 
Sbjct: 344 IF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVSEAHEHSGHLYLG 400

Query: 358 SLTSNFIGKVQL 369
           S  + ++ +++L
Sbjct: 401 SFRAPYLCRLRL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 196/395 (49%), Gaps = 41/395 (10%)

Query: 9   PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVL---- 62
           PE  +    S ++F     +F  L V L   LL   ++  SPI P      +P  +    
Sbjct: 25  PEVKEGSSFSGRVF---RMTFLMLAVSLAIPLLGAMMLLESPIDPQSFSFKEPPFMFGVL 81

Query: 63  -SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDG---TWVNW-----K 113
              T+L+   ++ E  ++ PE + ++   V++T T DG + +L++G   T   +     K
Sbjct: 82  HPNTKLRQAERLFENQLSGPE-SIVNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCK 140

Query: 114 FIDSQTL----VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 164
             D +      +G+ +   G L + D   GL +V+  +  V+  LS    + G K+ F N
Sbjct: 141 TRDDEPTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVN 200

Query: 165 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           D+    DG  +YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NG
Sbjct: 201 DLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNG 260

Query: 224 VALSRDEDYVVVCES--WKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281
           V LS +ED+V+V E+   + R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A  
Sbjct: 261 VQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAA 320

Query: 282 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 334
            + A      +  L+    IK ++    K+FSQ   +        ++ V++ G   R+L 
Sbjct: 321 TIRANPGFSMLDFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLH 377

Query: 335 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           DP GQ++++V+   + D +LY+ S  S FI ++ L
Sbjct: 378 DPDGQVVTYVSEAHEHDGYLYLGSFRSPFICRLSL 412

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 194/401 (48%), Gaps = 42/401 (10%)

Query: 4   TRKTEPETSKKGRT-SSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPA 60
           T  +  + +K+G   SSK+F     +F  L   L   LL   ++   PI P    + +P 
Sbjct: 19  TEDSPAQEAKEGSAYSSKVF---RVTFLTLAASLAVPLLGATVLLDCPIDPQPISLKEPP 75

Query: 61  VLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFI 115
           +L+       +LQ   ++ E  +  PE + ++   V++T T DG I +++DG       I
Sbjct: 76  LLTGVLEPNNKLQKAERLWENQLVGPE-SIVNIGDVLFTGTADGKILKIEDGEVQTVARI 134

Query: 116 ---------DSQTL---VGLTSTKEGHLIICDNANGLHKVSEDGVENFL-----SYVNGS 158
                    D  T    +G+       L + D   GL++V+    E  +     + + G 
Sbjct: 135 GHGPCGTPEDEPTCGRPLGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQ 194

Query: 159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG 217
           KL F ND+    DG  +YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G
Sbjct: 195 KLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVG 254

Query: 218 FYFANGVALSRDEDYVVVCES--WKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT 275
             F NGV LS  ED+V+V E+   + R+Y++ G  KG  + F EN+PG PDNI L+  G 
Sbjct: 255 LRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGG 314

Query: 276 FWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFIT---LGGGAHLIHVAEDGT 328
           +W+A+  +        +  L+    IK ++    KL SQ      L   + ++ ++E G+
Sbjct: 315 YWVAMPVVRPNPGFSMLDFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGS 371

Query: 329 IIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
             R+  DPTG  + +V+   + + +LY+ S  S FI ++ L
Sbjct: 372 YRRSFHDPTGLTVPYVSEAHEHNGYLYLGSFRSPFICRLNL 412

Gallus gallus (taxid: 9031)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score =  132 bits (331), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 176/359 (49%), Gaps = 41/359 (11%)

Query: 47  SPISPVLDEVPQPAVLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWI 101
           SPI P L  + +P ++S       +L++  ++ E  +  PE  + +   +IYT T DG I
Sbjct: 62  SPIHPELLSLSEPPLMSGCYEPNFKLREAQRLFEDQLVGPESIA-NFGDLIYTGTADGKI 120

Query: 102 KRLQ---------------DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE- 145
            +++               DG+    +       +G+     G L + D   GL KV+  
Sbjct: 121 VKIEGKSITVIARLGKPPCDGS--REQEPSCGRPLGIRVGPNGTLFVADAYLGLFKVNPV 178

Query: 146 -DGVENFLS---YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ 200
              V N +S    V G +L F ND+    DG  +YFT SSS++   +Y   I+E    G+
Sbjct: 179 TGEVTNLVSAGQMVGGRRLSFVNDLDVTQDGRKVYFTDSSSRWQRRDYLHLIMEATADGR 238

Query: 201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKCRKYWLKGERKGKLETFA 258
           +L+YD  +   T++ +   FANG+ L  DE+ V+V E+   + R+  + G  KG ++TF 
Sbjct: 239 VLEYDTETKEVTVLMENLRFANGIQLFPDEESVLVAETTMARIRRVHVSGLNKGGMDTFV 298

Query: 259 ENLPGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITL 314
           +NLPG PDNI  +  G +W+A+  +        +  L+    IK ++    KLFSQ + +
Sbjct: 299 DNLPGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQKPWIKKLIF---KLFSQDVLM 355

Query: 315 GGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 370
                   +I + E G  +R+  DP G + ++V+   + D HLY+ S  S ++ K+ LS
Sbjct: 356 KFVPRYSLVIELQESGACMRSFHDPHGMVAAYVSEAHEHDGHLYLGSFRSPYLCKLDLS 414

Salmo salar (taxid: 8030)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 191/395 (48%), Gaps = 41/395 (10%)

Query: 9   PETSKKGRTSSKLFVPACYSFGFLLVCLIAFLL--QIVYFSPISPVLDEVPQPAVL---- 62
           PE       S ++F     +F  L V L   LL   ++  SPI P      +P +L    
Sbjct: 26  PEAKDGSSFSGRVF---RVTFLMLAVSLTVPLLGAMMLLESPIDPQPLSFKEPPLLLGVL 82

Query: 63  -SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDG---TWVNW-----K 113
              T+L+   ++ E  +  PE  +   + V++T T DG + +L++G   T   +     K
Sbjct: 83  HPNTKLRQAERLFENQLVGPESIAHIGD-VMFTGTADGRVVKLENGEIETIARFGSGPCK 141

Query: 114 FIDSQTL----VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFAN 164
             D + +    +G+ +   G L + D   GL +V+  +  V+  LS    + G  + F N
Sbjct: 142 TRDDEPVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVN 201

Query: 165 DVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           D+    DG  +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NG
Sbjct: 202 DLTVTQDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNG 261

Query: 224 VALSRDEDYVVVCES--WKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII 281
           V LS  ED+V+V E+   + R+ ++ G  KG  + F EN+PG PDNI  +  G +W+ + 
Sbjct: 262 VQLSPAEDFVLVAETTMARIRRVYVSGLMKGGADLFVENMPGFPDNIRPSSSGGYWVGMS 321

Query: 282 KLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLV 334
            +        +  L+    IK ++    KLFSQ   +        ++ +++ G   R+L 
Sbjct: 322 TIRPNPGFSMLDFLSERPWIKRMIF---KLFSQETVMKFVPRYSLVLELSDSGAFRRSLH 378

Query: 335 DPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           DP G + ++++   + D HLY+ S  S F+ ++ L
Sbjct: 379 DPDGLVATYISEVHEHDGHLYLGSFRSPFLCRLSL 413

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 167/356 (46%), Gaps = 36/356 (10%)

Query: 47  SPISPVLDEVPQPAVLSAT-----QLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWI 101
           SPI P +  + +P +++       +L+   ++ E  +  PE  + +   V YT T DG I
Sbjct: 62  SPIQPEVFSLNEPPLMTGCYEPNLKLRQAERLFEERLVGPESLA-NIGDVFYTGTADGKI 120

Query: 102 KRLQDGTWVNWKFIDSQTL------------VGLTSTKEGHLIICDNANGLHKVSE--DG 147
            +++         I                 +G+     G L + D   GL +V+     
Sbjct: 121 VKIEGRNIHVLATIGKPPCGSREHEHTCGRPLGIRVGPNGTLFVADAYLGLFEVNPVTGE 180

Query: 148 VENFLS---YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK 203
           V++ +S    + G +L F ND+    DG  +YFT SSS++   ++   I+E    G++L+
Sbjct: 181 VKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDSSSRWQRRDFMHLIMEATADGRVLE 240

Query: 204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCR--KYWLKGERKGKLETFAENL 261
           YD  +    ++ +   F NG+ L  DE+ V+V E+   R  +  + G  KG ++TF ENL
Sbjct: 241 YDTETKEVNVMMENLRFPNGIQLFPDEESVLVAETTMARIKRVHVSGLNKGGMDTFIENL 300

Query: 262 PGAPDNINLAPDGTFWIAIIKLDAR----RMKILNSSKLIKHVLAAYPKLFSQFITLGGG 317
           PG PDNI  +  G +W+A+  +        +  L+    +K ++    KLFSQ   L   
Sbjct: 301 PGFPDNIRRSSSGGYWVAMSAVRPNPGFSMLDFLSQRPWLKKLIF---KLFSQDTLLKFV 357

Query: 318 AH---LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS 370
                ++ +  DGT +R+  DP G + ++ +   +   HLY+ S  S ++ K+ LS
Sbjct: 358 PRYSLVVELQSDGTCVRSFHDPQGLVSAYSSEAHEYSGHLYLGSFRSPYLCKLDLS 413

Danio rerio (taxid: 7955)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 97/186 (52%), Gaps = 13/186 (6%)

Query: 127 KEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSSKY 183
           K G L + D   GLH +S  G         V+G   +F + + V+ + G +YFT  SS++
Sbjct: 107 KTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVYFTSFSSRF 166

Query: 184 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKC-- 241
            P +  + +      G+L KYDPS+ + T++ +G   + G A+S D  +V+V +  K   
Sbjct: 167 SPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLVSQFTKSNI 226

Query: 242 RKYWLKGERKGKLETFAENLPGAPDNI-NLAPDGTFWIA------IIKLDARRMKILNSS 294
           ++YW+KG + G  E F  ++   PDNI  +   G FW+A      I+  +   +K+ ++ 
Sbjct: 227 KRYWIKGPKAGSSEDFTNSVSN-PDNIKRIGSTGNFWVASVVNKIIVPTNPSAVKVNSNG 285

Query: 295 KLIKHV 300
           ++++ +
Sbjct: 286 EVLQTI 291

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P92976|STS3_ARATH Strictosidine synthase 3 OS=Arabidopsis thaliana GN=SS3 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 7/163 (4%)

Query: 125 STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VEASDGSLYFTVSSS 181
           +TK G L + D A GLH +   G   +     V G    F + + V+ + G +YFT  SS
Sbjct: 107 NTKTGDLYVADAALGLHVIPRRGGLAKKIADSVGGKPFLFLDGLDVDPTTGVVYFTSFSS 166

Query: 182 KYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKC 241
            + P +    +      G+  KYDPS  + T++ +G   + G A+S D  +V+V +  K 
Sbjct: 167 TFGPRDVLKAVATKDSTGKFFKYDPSKKVVTVLMEGLSGSAGCAVSSDGSFVLVGQFTKS 226

Query: 242 --RKYWLKGERKGKLETFAENLPGAPDNIN-LAPDGTFWIAII 281
             ++YW+KG + G  E F  ++   PDNI  +   G FW+A +
Sbjct: 227 NIKRYWIKGSKAGTSEDFTNSVSN-PDNIKRIGSTGNFWVASV 268

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 37/233 (15%)

Query: 82  EDASMDKNGVIYTATRDGWIKRLQDGTWVNWK-----FID-------------------- 116
           E  S   N   + +T  G+   +QDG  + ++     F+D                    
Sbjct: 37  EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAE 96

Query: 117 SQTLVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VE 168
            + L G T     + +   L I D    L  V  +G       + V+G   ++   V V+
Sbjct: 97  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 156

Query: 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228
              G +YFT  S+ Y        +      G+L+KYDPS+  TTL+    +   G  +S 
Sbjct: 157 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 216

Query: 229 DEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
           D  +V+V E  S +  KYWL+G +KG  E   + +P  P NI    DG FW++
Sbjct: 217 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 267

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
255550417	356	Adipocyte plasma membrane-associated pro	0.913	0.949	0.546	1e-106
297738547	461	unnamed protein product [Vitis vinifera]	0.967	0.776	0.512	1e-104
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.967	0.550	0.512	1e-104
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.948	0.953	0.530	1e-103
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.908	0.920	0.531	1e-103
297738546	382	unnamed protein product [Vitis vinifera]	0.908	0.879	0.531	1e-103
357450079	372	Adipocyte plasma membrane-associated pro	0.916	0.911	0.523	1e-102
388499476	372	unknown [Medicago truncatula]	0.916	0.911	0.523	1e-101
357450077	352	Adipocyte plasma membrane-associated pro	0.916	0.963	0.513	2e-99
388492006	352	unknown [Medicago truncatula]	0.916	0.963	0.507	2e-98

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/342 (54%), Positives = 256/342 (74%), Gaps = 4/342 (1%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSAT-QLQDFIKVGEGSVNHPEDASMDKNG 90
           ++VCL+AF+ QI YFSPISP L ++P P  L    QLQ+ IK+GEG +  PED  MDK+G
Sbjct: 12  VVVCLLAFIFQIYYFSPISPDLLQLPAPFFLPPNKQLQEVIKLGEGFIQGPEDVCMDKDG 71

Query: 91  VIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVE 149
           V+YTA RD WIKR+ ++G+W NWK IDS  L+G+  +KEG LI+CD   GL KV+EDGV 
Sbjct: 72  VLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKEGGLIVCDADTGLLKVTEDGVT 131

Query: 150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN 209
              S VNGSK++FA+D +E+SDG++YF+V S+K+  H + LD+LE +PHGQLLKYDP+SN
Sbjct: 132 VLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLKYDPTSN 191

Query: 210 ITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDN 267
            T+++ DG  F NGVALS +EDY+V CESWK  C+K+WLKGE KGK ET  +NLPGAPDN
Sbjct: 192 QTSVLLDGLCFPNGVALSWEEDYLVFCESWKFRCQKHWLKGEDKGKTETLIDNLPGAPDN 251

Query: 268 INLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG 327
           INLAPDG+FWI ++++ A  ++ +++SK  KH++A++PKL      +   A +++VA DG
Sbjct: 252 INLAPDGSFWICLLQVAADGLEFVHTSKASKHLVASFPKLIELVNGVEKNAMVVNVAADG 311

Query: 328 TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
            I R   DP G+++SFVTS ++ D HLY+ SL +NF+GK+ L
Sbjct: 312 KITRKFDDPDGKVVSFVTSAVEFDGHLYLGSLKNNFVGKLPL 353

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/367 (51%), Positives = 258/367 (70%), Gaps = 9/367 (2%)

Query: 11  TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
           T   G   SK  + AC SF   L   +AF LQI +FSPISP    +P  +      ++ +
Sbjct: 95  TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 152

Query: 67  LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTS 125
           LQ+  K+GEG ++ PED   D  G++YTATRDGWIKRL ++G+W +W+ I   TL+G+T+
Sbjct: 153 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 212

Query: 126 TKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
           T+ G +++CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  
Sbjct: 213 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 272

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRK 243
           H++ LD+LE KPHGQLLKYDP  N T+++ D   FANGVALS+DED++VVCE+WK  C K
Sbjct: 273 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 332

Query: 244 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 303
           YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L    M  +++SK  KH++A 
Sbjct: 333 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 392

Query: 304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 363
           +PKL      +   A ++ V  DG +++   DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 393 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 452

Query: 364 IGKVQLS 370
           IGK+ L+
Sbjct: 453 IGKLPLT 459

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/367 (51%), Positives = 258/367 (70%), Gaps = 9/367 (2%)

Query: 11  TSKKGRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVL----SATQ 66
           T   G   SK  + AC SF   L   +AF LQI +FSPISP    +P  +      ++ +
Sbjct: 284 TGNNGFRPSKHCLQACSSFA--LASTLAFTLQIYFFSPISPDPLHLPHVSATLNYPTSNK 341

Query: 67  LQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTS 125
           LQ+  K+GEG ++ PED   D  G++YTATRDGWIKRL ++G+W +W+ I   TL+G+T+
Sbjct: 342 LQEVAKIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTT 401

Query: 126 TKEGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
           T+ G +++CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  
Sbjct: 402 TRTGGIVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGL 461

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRK 243
           H++ LD+LE KPHGQLLKYDP  N T+++ D   FANGVALS+DED++VVCE+WK  C K
Sbjct: 462 HDWYLDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLK 521

Query: 244 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 303
           YWLKGERKG+ E F +NLPG PDNINLAPDG+FWIA+++L    M  +++SK  KH++A 
Sbjct: 522 YWLKGERKGRTEVFVDNLPGGPDNINLAPDGSFWIALLELSREGMGFVHTSKASKHLVAT 581

Query: 304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 363
           +PKL      +   A ++ V  DG +++   DP G +MSFVT+ L+ + HLY+ SL +NF
Sbjct: 582 FPKLLGLVQGMQKKAMVVKVGADGKMMKRFNDPNGSVMSFVTNALEFEEHLYLGSLNTNF 641

Query: 364 IGKVQLS 370
           IGK+ L+
Sbjct: 642 IGKLPLT 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/364 (53%), Positives = 256/364 (70%), Gaps = 13/364 (3%)

Query: 15  GRTSSKLFVPACYSFGFLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA------TQLQ 68
           G   SK  +  C SF  +L  ++A  LQI +FSPISP  D +  P V +A       +LQ
Sbjct: 6   GFRPSKQHLQTCSSF--VLASILASTLQIYFFSPISP--DPLHLPPVSAAINLPTNNKLQ 61

Query: 69  DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTK 127
           +  K+GEG +N PED   D+ G++YTATRDGWIKRL ++G+W +WK I    L+G+T+ +
Sbjct: 62  EVTKIGEGFLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTAR 121

Query: 128 EGHLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
            G + +CD   GL KV EDGV    S+VNGS++RFA+DV+EASDGSLYF+V+SSK+  H 
Sbjct: 122 AGGIFVCDAQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHH 181

Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYW 245
           + LD+LE KPHGQLLKYDP  N T+++ D   F NGVALS+DED++VVCE+WK  C KYW
Sbjct: 182 WYLDLLEAKPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWKFRCLKYW 241

Query: 246 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP 305
           LKGERKG+ ETF +NLP  PDNINLAPDG+FWIA+IKL +   + +++SK +KH LA +P
Sbjct: 242 LKGERKGRTETFIDNLPNGPDNINLAPDGSFWIALIKLASDGFEFVHASKALKHFLATFP 301

Query: 306 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG 365
           KLF         A ++ VA DG I+    DP G++MSFVTS L+ ++HLY+ SL +NFIG
Sbjct: 302 KLFQLVNGSNEKATVVKVAADGKIVDKFDDPNGKVMSFVTSALEFEDHLYLGSLNTNFIG 361

Query: 366 KVQL 369
           K+ L
Sbjct: 362 KLPL 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/344 (53%), Positives = 256/344 (74%), Gaps = 8/344 (2%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
           +L C++A  LQI  FSPISP L ++PQP   A+L+  +LQ+  K+GEG ++ PED   D 
Sbjct: 21  ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 80

Query: 89  NGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG 147
            G++YTATRDGWIKRL ++G+W +W+ I   +L+G+T T+ G +I+CD   GL KV EDG
Sbjct: 81  EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 140

Query: 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207
           V    S+VNGSK++FANDV+EA+DGS+YF+V+S++++   + LD+LE KPHGQLLKYDP 
Sbjct: 141 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 198

Query: 208 SNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAP 265
            N T+++ D   FANGVALS+DED++VVCE+WK  C KYWL+GERKG+ ETF +NLPG P
Sbjct: 199 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 258

Query: 266 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 325
           DN+NLAPDG+FWIA+IK+ +   + +++SK +KH+LA +PKLF         A ++ VA 
Sbjct: 259 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 318

Query: 326 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           DG II    DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 319 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/344 (53%), Positives = 256/344 (74%), Gaps = 8/344 (2%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQP---AVLSATQLQDFIKVGEGSVNHPEDASMDK 88
           +L C++A  LQI  FSPISP L ++PQP   A+L+  +LQ+  K+GEG ++ PED   D 
Sbjct: 38  ILACILASALQIFLFSPISPDLLQLPQPSSAALLTNKKLQEVAKIGEGLLDKPEDVCFDG 97

Query: 89  NGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG 147
            G++YTATRDGWIKRL ++G+W +W+ I   +L+G+T T+ G +I+CD   GL KV EDG
Sbjct: 98  EGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGGIIVCDIEKGLLKVGEDG 157

Query: 148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS 207
           V    S+VNGSK++FANDV+EA+DGS+YF+V+S++++   + LD+LE KPHGQLLKYDP 
Sbjct: 158 VSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWYLDVLEAKPHGQLLKYDPL 215

Query: 208 SNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAP 265
            N T+++ D   FANGVALS+DED++VVCE+WK  C KYWL+GERKG+ ETF +NLPG P
Sbjct: 216 LNETSILLDNLAFANGVALSQDEDFLVVCETWKFRCLKYWLEGERKGRTETFIDNLPGGP 275

Query: 266 DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE 325
           DN+NLAPDG+FWIA+IK+ +   + +++SK +KH+LA +PKLF         A ++ VA 
Sbjct: 276 DNVNLAPDGSFWIALIKVTSDGFEFVHTSKALKHLLATFPKLFQLVKGSHKKASVVKVAA 335

Query: 326 DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           DG II    DP G+++SFVTS L+ +++LY+ SL +NFIG + L
Sbjct: 336 DGKIIDKFDDPNGKVISFVTSALEFEDYLYLGSLNTNFIGILPL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  377 bits (967), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/346 (52%), Positives = 257/346 (74%), Gaps = 7/346 (2%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
            +L  L+A  +Q+ YFSPI PV+ E+P  A   +     QLQ+ IK+GEG +  PED  +
Sbjct: 23  LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82

Query: 87  DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE 145
           DKNGV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD + GL KV+E
Sbjct: 83  DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142

Query: 146 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205
           DG    LS VNGS+L FA+DV+EASDG++YF+V S+K+  H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202

Query: 206 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPG 263
           P+ N T +V D   FANGVALS+DEDYVVVCE+WK  C ++WLKG   GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGINNGKTDIFIENLPG 262

Query: 264 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 323
            PDNINLAPDG+FWIA+++L ++R+  +++S + KH+LA++P+L +   +    A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322

Query: 324 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
             +G IIR   D  G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/346 (52%), Positives = 257/346 (74%), Gaps = 7/346 (2%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSA----TQLQDFIKVGEGSVNHPEDASM 86
            +L  L+A  +Q+ YFSPI PV+ E+P  A   +     QLQ+ IK+GEG +  PED  +
Sbjct: 23  LVLASLVALTVQVFYFSPIDPVILEIPSSASSPSSTKNNQLQNVIKLGEGFLKQPEDVCV 82

Query: 87  DKNGVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE 145
           DKNGV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD + GL KV+E
Sbjct: 83  DKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDASEGLLKVTE 142

Query: 146 DGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD 205
           DG    LS VNGS+L FA+DV+EASDG++YF+V S+K+  H++ LD+LE +PHGQLLKY+
Sbjct: 143 DGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHDWYLDLLEARPHGQLLKYN 202

Query: 206 PSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPG 263
           P+ N T +V D   FANGVALS+DEDYVVVCE+WK  C ++WLKG   GK + F ENLPG
Sbjct: 203 PTLNETVIVIDNLTFANGVALSKDEDYVVVCETWKFRCVRHWLKGIDNGKTDIFIENLPG 262

Query: 264 APDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV 323
            PDNINLAPDG+FWIA+++L ++R+  +++S + KH+LA++P+L +   +    A +++V
Sbjct: 263 GPDNINLAPDGSFWIALVQLTSKRLGFVHTSIVCKHLLASFPRLINLINSATKSAMVLNV 322

Query: 324 AEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
             +G IIR   D  G+++SFVTS ++ ++HLY+ SL S+F+GK+ L
Sbjct: 323 GTEGNIIRKFGDNEGKVISFVTSAVEFEDHLYLGSLNSDFVGKLPL 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  368 bits (945), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/343 (51%), Positives = 249/343 (72%), Gaps = 4/343 (1%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
            +L  L+A  +Q+ YFSPI PV  E+P   +     QLQ  IK+GEG +  PED  +DK+
Sbjct: 7   LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66

Query: 90  GVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGV 148
           GV+YTATRDGWIKR+ ++  W NWK IDS +L+G+T++K+G LI+CD   GL KV+EDG 
Sbjct: 67  GVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126

Query: 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 208
              LS VNGS+L FA+D++EASDG++YF+V S+K+  H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186

Query: 209 NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPD 266
           N T +V D   FANGVALS+DEDY+VVCE+WK  C K+WLKG  KGK E F ENLP  PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246

Query: 267 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 326
           NINLAPDG+FWIA+I++ + RM  +++SK+ KH++A +P+L +   ++   A ++ V  +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKHLVALFPRLVNMINSVTKSAMVVKVTTE 306

Query: 327 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           G II+   D  G+ ++FVTS ++ +++LY+ SL ++F+GK  L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/343 (50%), Positives = 249/343 (72%), Gaps = 4/343 (1%)

Query: 31  FLLVCLIAFLLQIVYFSPISPVLDEVP-QPAVLSATQLQDFIKVGEGSVNHPEDASMDKN 89
            +L  L+A  +Q+ YFSPI PV  E+P   +     QLQ  IK+GEG +  PED  +DK+
Sbjct: 7   LVLAALVALTVQVFYFSPIDPVSLEIPFSVSSTKNNQLQSVIKLGEGFLKQPEDVCVDKD 66

Query: 90  GVIYTATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGV 148
           GV+YTATRDGWIKR+ ++  W NWK +DS +L+G+T++K+G LI+CD   GL KV+EDG 
Sbjct: 67  GVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKDGGLIVCDTTLGLLKVTEDGF 126

Query: 149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS 208
              LS VNGS+L FA+D++EASDG++YF+V S+K+  H + LD+LE +PHGQLL+Y+P S
Sbjct: 127 SVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHNWYLDVLEARPHGQLLRYNPLS 186

Query: 209 NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPD 266
           N T +V D   FANGVALS+DEDY+VVCE+WK  C K+WLKG  KGK E F ENLP  PD
Sbjct: 187 NETVIVLDHLAFANGVALSKDEDYLVVCETWKFRCLKHWLKGINKGKTEIFIENLPAGPD 246

Query: 267 NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED 326
           NINLAPDG+FWIA+I++ + RM  +++SK+ K+++A +P+L +   ++   A ++ V  +
Sbjct: 247 NINLAPDGSFWIALIQVTSERMGFVHTSKVSKYLVALFPRLVNMINSVTKSAMVVKVTTE 306

Query: 327 GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
           G II+   D  G+ ++FVTS ++ +++LY+ SL ++F+GK  L
Sbjct: 307 GNIIKKFGDNDGKKITFVTSAVEFEDNLYLGSLNTDFVGKFPL 349

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.9	0.9	0.318	1.7e-41
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.916	0.913	0.311	2e-40
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.924	0.921	0.316	2.6e-40
UNIPROTKB|E2RPE9	415	APMAP "Uncharacterized protein	0.667	0.595	0.320	7.2e-36
RGD|1308874	376	Apmap "adipocyte plasma membra	0.664	0.654	0.329	7.2e-36
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.664	0.637	0.329	7.2e-36
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.781	0.778	0.321	1.2e-35
UNIPROTKB|Q3T0E5	412	APMAP "Adipocyte plasma membra	0.664	0.597	0.318	1.5e-35
MGI|MGI:1919131	415	Apmap "adipocyte plasma membra	0.664	0.592	0.321	2.4e-35
UNIPROTKB|Q5ZIF1	415	APMAP "Adipocyte plasma membra	0.664	0.592	0.318	1.1e-33

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 114/358 (31%), Positives = 183/358 (51%)

Query:    29 FGFLLVCLIAFLL-QIVYFSPISPVLDEV---PQ--PAVLSATQLQDFIKVGEGSVNHPE 82
             F     CLI+  L Q+  F P S   D +   P   P +L+   L     +G G +N+PE
Sbjct:    12 FSIFFPCLISITLYQLDSFEPASLPADSLITSPTSIPPLLNDRFLTGAEFIGVGLLNNPE 71

Query:    83 DASMDKNG-VIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLTSTKEGHLIICD 135
             D +  K+  +IYT   DGW+KR+       D    +W     + L G+     G +I+ D
Sbjct:    72 DIAYHKDSNLIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPL-GIAFGLHGEVIVAD 130

Query:   136 NANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL 193
                GL  +S+ G   E      +G + +  + V  A +G LYFT +SSKY  +++  D L
Sbjct:   131 ANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSKYDFYQFIFDFL 190

Query:   194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KCRKYWLKGERK 251
             EGKPHG+++ +DP++  T ++    YFANG+++S D+ + V CE+   +C KY++  ER 
Sbjct:   191 EGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCSKYYISEER- 249

Query:   252 GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF 311
               +E F + LPG PDNI    DG +WIA+I       K+      ++ ++    K   + 
Sbjct:   250 --VEVFIQGLPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIYMAAKYGVEL 307

Query:   312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL 369
             +++   A ++ V  DG  I    D      S +TSG+++ NHLY  SL  ++I ++ L
Sbjct:   308 LSIKNAA-VLQVDLDGNPIAMYHDHP---FSHITSGVKIGNHLYFGSLLHSYITRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 115/369 (31%), Positives = 189/369 (51%)

Query:    21 LFVPACYSFGFLLVCLIAF--LLQIVYFSPISPVLDEVPQ------PAVLSATQLQDFIK 72
             +F  + + F F +V L+    L Q+  F P +PV  E         P ++S   L     
Sbjct:     3 MFYSSRFLFFFTIVPLLVSIALYQLDTFDP-APVPSEAYASSTTSIPPLISDKYLTGAEF 61

Query:    73 VGEGSVNHPEDAS--MDKNGVIYTATRDGWIKRLQ------DGTWVNWKFIDSQTLVGLT 124
             +G G ++ PED +   D N +IYT   DGW+KR+       D    +W     + L G+ 
Sbjct:    62 IGVGLLDKPEDIAYHQDSN-LIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPL-GIA 119

Query:   125 STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSK 182
                 G +I+ D   GL  +S DG   E       G K +  + V  A +G LYFT +S K
Sbjct:   120 FGVHGEVIVADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASYK 179

Query:   183 YLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WK 240
             Y  H+   DILEGKPHG+L+ +DP++ +T ++    YFANGV++S D+ +++ CE+   +
Sbjct:   180 YTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCETPMRR 239

Query:   241 CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV 300
             C KY++  ER   +E F + LPG PDNI    DG +WIA++   +   ++      ++ +
Sbjct:   240 CSKYYINEER---VEVFIQGLPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKI 296

Query:   301 LAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT 360
              A   K   + + +   A ++ V  DG  I    D   Q +S +T+G+++ N+LY  ++ 
Sbjct:   297 TAIAAKYGVELMFMKN-AGVLQVDLDGNPIAYYHD---QRLSHITTGIKIGNYLYCGNIL 352

Query:   361 SNFIGKVQL 369
              ++I ++ L
Sbjct:   353 HSYIIRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 116/366 (31%), Positives = 189/366 (51%)

Query:    21 LFVPACYSFGFLLV-CLIAFLL-QIVYFSPISPVLDEVPQ-----PAVLSATQLQDFIKV 73
             +F+ + + F  ++V  LI+  L Q+  F P     D +       P +++   L     +
Sbjct:     3 VFLSSRFLFFCIIVPLLISITLYQLDTFDPAHHPADSLISSTASIPPLINERFLTGAEFI 62

Query:    74 GEGSVNHPED-ASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTL-----VGLTSTK 127
             G G +N PED A  + +G IYT   DGW+KR++    VN   ++         +G+    
Sbjct:    63 GVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPLGIAFGI 122

Query:   128 EGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
              G +I+ D   GL  +S DG   E      +G + +  + V  A +G LYFT  S KY  
Sbjct:   123 HGEVIVADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYKYNL 182

Query:   186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKCRK 243
             H++  DILEGKPHG+L+ +DP++ +T ++    YFANGV+LS D+ ++V CE+   +C K
Sbjct:   183 HQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCETPIRRCSK 242

Query:   244 YWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA 303
             Y++ G   G++E F + LPG PDNI    DG +WIA+        K+      ++ + A 
Sbjct:   243 YYING---GRVELFIQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITAM 299

Query:   304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF 363
               K   + + +   A ++ V  DG  I    D   Q +S +T+G+++ N+LY  SL  + 
Sbjct:   300 AAKYGYEPMFMEN-AGVLQVDLDGNPIAYYHD---QALSHITTGVKIGNYLYCGSLWHSH 355

Query:   364 IGKVQL 369
             I ++ L
Sbjct:   356 ILRLDL 361

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|E2RPE9 APMAP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 337 (123.7 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 85/265 (32%), Positives = 143/265 (53%)

Query:   120 LVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDGS- 173
             L+G+ +   G L + D   GL +V+  +  V+  +S    + G K+ F ND+    DG  
Sbjct:   151 LLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLVSSEIPIEGRKMSFVNDLTITQDGKK 210

Query:   174 LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV 233
             +YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V
Sbjct:   211 IYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDMETKEVKVLLDQLRFPNGVQLSPEEDFV 270

Query:   234 VVCESW--KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----R 287
             +V E+   + R++++ G  KG  + F ENLPG PDNI  +  G +W+ +  + +      
Sbjct:   271 LVAETTMARIRRFYVSGLMKGGADLFVENLPGFPDNIRPSSSGGYWVGMATIRSNPGFSM 330

Query:   288 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFV 344
             +  L+    IK ++    KLFSQ   +        ++ ++  G   R+L DPTGQ+ S+V
Sbjct:   331 LDFLSERPYIKRMIF---KLFSQETVMKFVPRYSLVLELSNSGAFRRSLHDPTGQVASYV 387

Query:   345 TSGLQVDNHLYVISLTSNFIGKVQL 369
             +   + + HLY+ S  + F+ ++ L
Sbjct:   388 SEVHEYNGHLYLGSFRAPFLCRLSL 412

GO:0016020 "membrane" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 87/264 (32%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+     G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   113 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 172

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   173 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 232

Query:   235 VCESW--KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 288
             V E+   + R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   233 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 292

Query:   289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 345
               L+    IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   293 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 349

Query:   346 SGLQVDNHLYVISLTSNFIGKVQL 369
                + D +LY+ S  S FI ++ L
Sbjct:   350 EAHEHDGYLYLGSFRSPFICRLSL 373

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 337 (123.7 bits), Expect = 7.2e-36, Sum P(2) = 7.2e-36
 Identities = 87/264 (32%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+     G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   123 LGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRDGRKI 182

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   183 YFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 242

Query:   235 VCESW--KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 288
             V E+   + R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   243 VAETAMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 302

Query:   289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 345
               L+    IK ++    KLFSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   303 DFLSDKPFIKRMIF---KLFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 359

Query:   346 SGLQVDNHLYVISLTSNFIGKVQL 369
                + D +LY+ S  S FI ++ L
Sbjct:   360 EAHEHDGYLYLGSFRSPFICRLSL 383

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 99/308 (32%), Positives = 159/308 (51%)

Query:    73 VGEGSVNHPEDASMDK-NGVIYTATRDGWIKRLQDGTWVN------WKFIDSQTLVGLTS 125
             +G G +N PED +  K + +IYT   DGW+KR++    VN      W     + L G+  
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPL-GIAF 120

Query:   126 TKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKY 183
                G +I+ D   GL  +S DG   E      +G K +  + V  A +G LYFT +S KY
Sbjct:   121 GIHGEVIVADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYKY 180

Query:   184 LPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WKC 241
               ++  LD+LEGKP G+LL +DP++ +T ++    YFANG+ +S D+ +++ CE+   +C
Sbjct:   181 TLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCETPMKRC 240

Query:   242 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL 301
              KY++  ER   +E F ++LPG PDNI    DG +WIA+         I      ++ + 
Sbjct:   241 SKYYISEER---VEVFTQSLPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLT 297

Query:   302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS 361
             A   K +   +     A ++ V  DG  I    DP    +S + +  ++  +LY  SL+ 
Sbjct:   298 AMVAK-YGVDLMFMENAGVLQVDLDGNPIAYYHDPK---LSHIATCDKIGKYLYCGSLSQ 353

Query:   362 NFIGKVQL 369
             + I ++ L
Sbjct:   354 SHILRLDL 361

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

UNIPROTKB|Q3T0E5 APMAP "Adipocyte plasma membrane-associated protein" [Bos taurus (taxid:9913)]

 Score = 337 (123.7 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 84/264 (31%), Positives = 144/264 (54%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+ +   G L + D   GL +V+  +  V+  LS    + G K+ F ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVTRDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++EG   G+LL+YD  +    ++ D   F NGV LS  ED+V+
Sbjct:   212 YFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSPAEDFVL 271

Query:   235 VCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 288
             V E    + R++++ G  KG  + F ENLPG PDNI  +  G +W+++  + A      +
Sbjct:   272 VVELAMVRIRRFYVSGLMKGGADVFVENLPGFPDNIRASSSGGYWVSMAAIRANPGFSML 331

Query:   289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 345
               L+    +K V+    KLFSQ   +        ++ +++ GT +R+L DP GQ++++V+
Sbjct:   332 DFLSERPFLKKVIF---KLFSQETVMKFVPRYSLVLELSDSGTFLRSLHDPEGQVVTYVS 388

Query:   346 SGLQVDNHLYVISLTSNFIGKVQL 369
                +   HLY+ S  + ++ +++L
Sbjct:   389 EAHEHSGHLYLGSFRAPYLCRLRL 412

GO:0009986 "cell surface" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

MGI|MGI:1919131 Apmap "adipocyte plasma membrane associated protein" [Mus musculus (taxid:10090)]

 Score = 334 (122.6 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 85/264 (32%), Positives = 140/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED--GVENFLSY---VNGSKLRFANDVVEASDG-SL 174
             +G+ +   G L + D   GL +V+     V+  LS    + G K+ F ND+    DG  +
Sbjct:   152 LGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   +Y L ++E    G+LL+YD  +    ++ D   F NGV LS +ED+V+
Sbjct:   212 YFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVL 271

Query:   235 VCESW--KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR----RM 288
             V E+   + R+ ++ G  KG  + F EN+PG PDNI  +  G +W+A   + A      +
Sbjct:   272 VAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSML 331

Query:   289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAH---LIHVAEDGTIIRNLVDPTGQLMSFVT 345
               L+    IK ++    K+FSQ   +        ++ V++ G   R+L DP GQ++++V+
Sbjct:   332 DFLSDKPFIKRMIF---KMFSQETVMKFVPRYSLVLEVSDSGAFRRSLHDPDGQVVTYVS 388

Query:   346 SGLQVDNHLYVISLTSNFIGKVQL 369
                + D +LY+ S  S FI ++ L
Sbjct:   389 EAHEHDGYLYLGSFRSPFICRLSL 412

GO:0004064 "arylesterase activity" evidence=ISO

GO:0008152 "metabolic process" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|Q5ZIF1 APMAP "Adipocyte plasma membrane-associated protein" [Gallus gallus (taxid:9031)]

 Score = 315 (115.9 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 84/264 (31%), Positives = 141/264 (53%)

Query:   121 VGLTSTKEGHLIICDNANGLHKVSED-GVENFL----SYVNGSKLRFANDVVEASDG-SL 174
             +G+       L + D   GL++V+   G    L    + + G KL F ND+    DG  +
Sbjct:   152 LGIRVGPNNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKI 211

Query:   175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
             YFT SSSK+   ++   ++EG   G+LL+YD  +    ++  G  F NGV LS  ED+V+
Sbjct:   212 YFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVL 271

Query:   235 VCESW--KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA--IIKLDA--RRM 288
             V E+   + R+Y++ G  KG  + F EN+PG PDNI L+  G +W+A  +++ +     +
Sbjct:   272 VLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGYWVAMPVVRPNPGFSML 331

Query:   289 KILNSSKLIKHVLAAYPKLFSQ-FIT--LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVT 345
               L+    IK ++    KL SQ  +T  L   + ++ ++E G+  R+  DPTG  + +V+
Sbjct:   332 DFLSEKPWIKRMIF---KLLSQETVTKLLPKRSLVVELSETGSYRRSFHDPTGLTVPYVS 388

Query:   346 SGLQVDNHLYVISLTSNFIGKVQL 369
                + + +LY+ S  S FI ++ L
Sbjct:   389 EAHEHNGYLYLGSFRSPFICRLNL 412

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0004064 "arylesterase activity" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7TP48	APMAP_RAT	No assigned EC number	0.3031	0.9135	0.8989	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016421001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	8e-26
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	1e-23
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	5e-11
pfam01731	86	pfam01731, Arylesterase, Arylesterase	0.001

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 99.0 bits (247), Expect = 8e-26
 Identities = 38/85 (44%), Positives = 53/85 (62%), Gaps = 2/85 (2%)

Query: 167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL 226
           V+   G LYFT SSS+Y   +    +LEG   G+L+KYDPS+ +T ++    YF NG+AL
Sbjct: 5   VDPETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGIAL 64

Query: 227 SRDEDYVVVCESWKCR--KYWLKGE 249
           S D  +V+ CE+   R  KYW+KG 
Sbjct: 65  SPDGSFVLFCETPMKRISKYWIKGP 89

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 99.0 bits (247), Expect = 1e-23
 Identities = 56/235 (23%), Positives = 85/235 (36%), Gaps = 29/235 (12%)

Query: 56  VPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWK 113
              P  L          +GEG V  P+        +++     G I RL    G    + 
Sbjct: 13  TAAPVTLLDKGAT----LGEGPVWDPDR-----GALLWVDILGGRIHRLDPETGKKRVFP 63

Query: 114 FIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDG 172
                +   L     G LI C++   L      G +       +G  L   ND V   DG
Sbjct: 64  SPGGFSSGALID-AGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG 122

Query: 173 SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY 232
            ++F           + L   E +P G L + DP   +  L+ D     NG+A S D   
Sbjct: 123 RIWFG------DMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKT 176

Query: 233 VVVCESWKCR--KYWL------KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
           + V ++   R  +Y L       G R+G +    +  PG PD + +  DG  W+A
Sbjct: 177 LYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDADGNLWVA 229

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 51/220 (23%), Positives = 75/220 (34%), Gaps = 32/220 (14%)

Query: 73  VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH 130
           +GEG V   E+ +     + +     G I RL    G    W        + L    +G 
Sbjct: 1   LGEGPVWDEEEGA-----LYWVDILGGRIHRLDPATGKETVWDLPGPVGAIALR--DDGR 53

Query: 131 LIICDNANGLH--KVSEDGVENFLSYVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHE 187
           LI+     GL    +    +             RF ND     DG  +F           
Sbjct: 54  LIVA-LKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFGT--------- 102

Query: 188 YCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYW-- 245
              DI  G   G L + DP   +   V DG   +NG+A S D   +   +S   R+ W  
Sbjct: 103 MGFDIAPGGEPGALYRLDPDGKVE-RVLDGITISNGLAWSPDGKTLYFADSPT-RRIWAF 160

Query: 246 ---LKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAI 280
                G        FA  ++  G PD + +  +G  W+A 
Sbjct: 161 DYDADGGLISNRRVFADFKDGDGEPDGMAVDAEGNVWVAR 200

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

>gnl|CDD|190082 pfam01731, Arylesterase, Arylesterase

 Score = 37.4 bits (87), Expect = 0.001
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 2/75 (2%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG 223
           ND+V     S Y T       P    L++  G     ++ Y PS      VA GF FANG
Sbjct: 1   NDIVAVGPDSFYATNDHYFGDPFLQNLEMYLGLIWTGVVYYSPSEVKV--VASGFSFANG 58

Query: 224 VALSRDEDYVVVCES 238
           +  S D+ Y+ V  S
Sbjct: 59  INYSPDKKYIYVASS 73

This family consists of arylesterases (Also known as serum paraoxonase) EC:3.1.1.2. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity. Human arylesterase (PON1) is associated with HDL and may protect against LDL oxidation. Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	100.0
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.95
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.94
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.8
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.78
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.68
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.49
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
PRK11028	330	6-phosphogluconolactonase; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.29
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.25
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.25
PRK11028	330	6-phosphogluconolactonase; Provisional	99.23
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.21
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.19
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.18
COG3292	671	Predicted periplasmic ligand-binding sensor domain	99.18
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.15
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.06
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	99.05
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	99.04
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.0
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.98
COG3391	381	Uncharacterized conserved protein [Function unknow	98.97
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.94
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.89
COG3391	381	Uncharacterized conserved protein [Function unknow	98.89
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.76
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.72
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.71
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.7
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.62
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.6
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.54
PRK04792	448	tolB translocation protein TolB; Provisional	98.53
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.52
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.52
PRK04922	433	tolB translocation protein TolB; Provisional	98.51
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.5
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.48
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.45
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.44
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.43
PRK03629	429	tolB translocation protein TolB; Provisional	98.42
PRK02889	427	tolB translocation protein TolB; Provisional	98.4
PRK05137	435	tolB translocation protein TolB; Provisional	98.39
PRK00178	430	tolB translocation protein TolB; Provisional	98.37
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.34
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.33
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.31
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.28
PRK05137	435	tolB translocation protein TolB; Provisional	98.27
PRK13684	334	Ycf48-like protein; Provisional	98.27
PRK04043	419	tolB translocation protein TolB; Provisional	98.26
PRK03629	429	tolB translocation protein TolB; Provisional	98.25
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.24
PRK04792	448	tolB translocation protein TolB; Provisional	98.22
PRK04043	419	tolB translocation protein TolB; Provisional	98.21
KOG0266	456	consensus WD40 repeat-containing protein [General	98.21
PRK01742	429	tolB translocation protein TolB; Provisional	98.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.21
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.19
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.17
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.16
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.16
PRK04922	433	tolB translocation protein TolB; Provisional	98.15
PRK02889	427	tolB translocation protein TolB; Provisional	98.12
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.11
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.08
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	98.08
KOG0266	456	consensus WD40 repeat-containing protein [General	98.07
PRK13684	334	Ycf48-like protein; Provisional	98.07
KOG2106	626	consensus Uncharacterized conserved protein, conta	98.06
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.05
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.0
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	98.0
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.98
KOG0318	603	consensus WD40 repeat stress protein/actin interac	97.93
PRK01029	428	tolB translocation protein TolB; Provisional	97.92
PRK00178	430	tolB translocation protein TolB; Provisional	97.92
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.88
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.84
KOG2055	514	consensus WD40 repeat protein [General function pr	97.83
PTZ00421	493	coronin; Provisional	97.82
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.82
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.79
PRK02888	635	nitrous-oxide reductase; Validated	97.77
KOG0289	506	consensus mRNA splicing factor [General function p	97.76
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.75
KOG0286	343	consensus G-protein beta subunit [General function	97.74
PRK01742	429	tolB translocation protein TolB; Provisional	97.73
KOG0286	343	consensus G-protein beta subunit [General function	97.71
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.68
KOG1539	910	consensus WD repeat protein [General function pred	97.68
KOG1274	933	consensus WD40 repeat protein [General function pr	97.64
PTZ00421	493	coronin; Provisional	97.63
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.63
PLN00033	398	photosystem II stability/assembly factor; Provisio	97.61
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	97.59
KOG1273	405	consensus WD40 repeat protein [General function pr	97.53
PLN00181	793	protein SPA1-RELATED; Provisional	97.52
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.51
KOG1274	933	consensus WD40 repeat protein [General function pr	97.49
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.47
COG4946	668	Uncharacterized protein related to the periplasmic	97.47
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.46
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.46
COG1520	370	FOG: WD40-like repeat [Function unknown]	97.45
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	97.44
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.41
PTZ00420	568	coronin; Provisional	97.41
COG4946	668	Uncharacterized protein related to the periplasmic	97.39
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.39
KOG2055	514	consensus WD40 repeat protein [General function pr	97.38
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.35
KOG0275	508	consensus Conserved WD40 repeat-containing protein	97.32
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.29
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.28
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	97.27
PLN00181	793	protein SPA1-RELATED; Provisional	97.27
KOG2139	445	consensus WD40 repeat protein [General function pr	97.25
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.24
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.23
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.21
PRK01029	428	tolB translocation protein TolB; Provisional	97.14
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.14
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.14
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.12
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.08
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.06
PLN00033	398	photosystem II stability/assembly factor; Provisio	97.0
PRK02888	635	nitrous-oxide reductase; Validated	96.99
KOG0282	503	consensus mRNA splicing factor [Function unknown]	96.98
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.97
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	96.96
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	96.95
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.93
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.93
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	96.91
KOG0646	476	consensus WD40 repeat protein [General function pr	96.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	96.8
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	96.8
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	96.79
PTZ00420	568	coronin; Provisional	96.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.77
KOG0263	707	consensus Transcription initiation factor TFIID, s	96.75
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.73
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.72
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.71
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.67
KOG0293	519	consensus WD40 repeat-containing protein [Function	96.67
PRK13616	591	lipoprotein LpqB; Provisional	96.66
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	96.66
KOG0643	327	consensus Translation initiation factor 3, subunit	96.62
COG3211	616	PhoX Predicted phosphatase [General function predi	96.58
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.53
KOG0289	506	consensus mRNA splicing factor [General function p	96.49
KOG0646	476	consensus WD40 repeat protein [General function pr	96.42
COG3211	616	PhoX Predicted phosphatase [General function predi	96.39
KOG1407	313	consensus WD40 repeat protein [Function unknown]	96.26
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.26
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.2
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.18
KOG0283	712	consensus WD40 repeat-containing protein [Function	96.11
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	96.1
KOG2096	420	consensus WD40 repeat protein [General function pr	96.03
KOG0772	641	consensus Uncharacterized conserved protein, conta	95.98
KOG2048	691	consensus WD40 repeat protein [General function pr	95.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	95.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	95.93
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	95.93
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.9
KOG2139	445	consensus WD40 repeat protein [General function pr	95.75
KOG0771	398	consensus Prolactin regulatory element-binding pro	95.74
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.74
KOG0316	307	consensus Conserved WD40 repeat-containing protein	95.67
KOG0288	459	consensus WD40 repeat protein TipD [General functi	95.64
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	95.6
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.57
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.56
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	95.46
KOG0640	430	consensus mRNA cleavage stimulating factor complex	95.44
KOG0639	705	consensus Transducin-like enhancer of split protei	95.41
KOG2048	691	consensus WD40 repeat protein [General function pr	95.4
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.37
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.36
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	95.34
KOG0973	942	consensus Histone transcription regulator HIRA, WD	95.26
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	95.23
KOG2096	420	consensus WD40 repeat protein [General function pr	94.96
KOG0639	705	consensus Transducin-like enhancer of split protei	94.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	94.79
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.78
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	94.77
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	94.76
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	94.68
KOG0296	399	consensus Angio-associated migratory cell protein	94.61
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	94.61
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.6
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.57
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	94.56
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	94.56
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	94.54
PRK13616	591	lipoprotein LpqB; Provisional	94.52
KOG1539	910	consensus WD repeat protein [General function pred	94.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.44
PF07494	24	Reg_prop: Two component regulator propeller; Inter	94.4
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	94.26
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.13
KOG0973	942	consensus Histone transcription regulator HIRA, WD	94.06
KOG0645	312	consensus WD40 repeat protein [General function pr	94.04
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	93.85
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.82
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.79
PF07494	24	Reg_prop: Two component regulator propeller; Inter	93.78
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	93.63
KOG0301	745	consensus Phospholipase A2-activating protein (con	93.62
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	93.5
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	93.5
KOG0296	399	consensus Angio-associated migratory cell protein	93.45
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	93.38
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	93.28
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	93.27
KOG2110	391	consensus Uncharacterized conserved protein, conta	93.12
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	93.0
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	92.83
KOG0301	745	consensus Phospholipase A2-activating protein (con	92.7
KOG1407	313	consensus WD40 repeat protein [Function unknown]	92.56
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.47
KOG0643	327	consensus Translation initiation factor 3, subunit	92.41
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	92.29
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.27
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	92.07
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	91.97
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	91.9
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	91.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	91.6
KOG0284	464	consensus Polyadenylation factor I complex, subuni	91.58
KOG2321	703	consensus WD40 repeat protein [General function pr	91.4
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	91.1
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	90.92
KOG3881	412	consensus Uncharacterized conserved protein [Funct	90.87
KOG1273	405	consensus WD40 repeat protein [General function pr	90.83
KOG2110	391	consensus Uncharacterized conserved protein, conta	90.69
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	90.67
KOG4328	498	consensus WD40 protein [Function unknown]	90.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	90.56
KOG2321	703	consensus WD40 repeat protein [General function pr	90.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	89.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	89.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	89.72
COG4247	364	Phy 3-phytase (myo-inositol-hexaphosphate 3-phosph	89.64
PHA02713	557	hypothetical protein; Provisional	89.1
KOG3621	726	consensus WD40 repeat-containing protein [General	89.01
COG5276	370	Uncharacterized conserved protein [Function unknow	88.89
KOG1963	792	consensus WD40 repeat protein [General function pr	88.85
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	88.62
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	88.54
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	88.48
PHA02713	557	hypothetical protein; Provisional	88.37
KOG0295	406	consensus WD40 repeat-containing protein [Function	88.29
KOG0308	735	consensus Conserved WD40 repeat-containing protein	87.9
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	87.43
KOG0771	398	consensus Prolactin regulatory element-binding pro	87.4
KOG1188	376	consensus WD40 repeat protein [General function pr	87.31
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	87.08
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	87.06
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	86.37
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	85.95
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	85.88
smart00284	255	OLF Olfactomedin-like domains.	85.59
KOG4547	541	consensus WD40 repeat-containing protein [General	85.59
KOG0294	362	consensus WD40 repeat-containing protein [Function	85.57
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	85.56
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.34
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	85.26
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	84.01
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.12
PF11763	123	DIPSY: Cell-wall adhesin ligand-binding C-terminal	82.98
KOG1215	877	consensus Low-density lipoprotein receptors contai	82.86
KOG0647	347	consensus mRNA export protein (contains WD40 repea	82.7
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	82.25
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	82.09
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	81.91
KOG0302	440	consensus Ribosome Assembly protein [General funct	81.75
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	81.72
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	81.27
KOG1963	792	consensus WD40 repeat protein [General function pr	80.6
KOG1215	877	consensus Low-density lipoprotein receptors contai	80.43
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	80.32
PHA02790	480	Kelch-like protein; Provisional	80.1

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=100.00  E-value=1.5e-47  Score=342.89  Aligned_cols=308  Identities=31%  Similarity=0.540  Sum_probs=263.1

Q ss_pred             cccccccCceEecCCCcCCCcceEEc-CCCcEEEEecCCeEEEEeC--C----e-----EEEEEecCCCceeceEEcCCC
Q 017520           62 LSATQLQDFIKVGEGSVNHPEDASMD-KNGVIYTATRDGWIKRLQD--G----T-----WVNWKFIDSQTLVGLTSTKEG  129 (370)
Q Consensus        62 ~~~~~l~~~~~~~~~~~~~P~~i~~d-~~G~l~v~~~~g~I~~~~~--g----~-----~~~~~~~~~~p~~gl~~d~~G  129 (370)
                      .+++.+...+.+..+....|+.+.+. .+--.|.|...|+|-+.+.  .    .     .....+.||||+ ||+++..|
T Consensus        48 ~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPL-Gl~f~~~g  126 (376)
T KOG1520|consen   48 IPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPL-GIRFDKKG  126 (376)
T ss_pred             ccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcc-eEEeccCC
Confidence            45555656666655555544444443 2223777877887777761  1    0     111234579999 99999888


Q ss_pred             -cEEEEeCCCceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          130 -HLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       130 -~L~v~~~~~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                       +|||||.+.|++.+++.|  .+.+.+...|.++.+.|++.++++|.+||+|+|++|+.++++..+++++.+|++++||+
T Consensus       127 gdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~  206 (376)
T KOG1520|consen  127 GDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDP  206 (376)
T ss_pred             CeEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccceEEecC
Confidence             899999999999999554  66677778899999999999999999999999999999999999999999999999999


Q ss_pred             CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCc
Q 017520          207 SSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLD  284 (370)
Q Consensus       207 ~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  284 (370)
                      .++..+++.+++.+|||+++++|+.+++++|+..  |.|||+++++.++.+.|++++||+||||..+++|++||+....+
T Consensus       207 ~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~LPG~PDNIR~~~~G~fWVal~~~~  286 (376)
T KOG1520|consen  207 STKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGLPGYPDNIRRDSTGHFWVALHSKR  286 (376)
T ss_pred             cccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhhcCCCCCcceeECCCCCEEEEEeccc
Confidence            9999999999999999999999999999999987  99999999999999999988999999999999999999999999


Q ss_pred             hhHHHhhhcchhHHHHHHhCCcccccc----ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCC
Q 017520          285 ARRMKILNSSKLIKHVLAAYPKLFSQF----ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT  360 (370)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~  360 (370)
                      +.+++++..+|++|+++.++|...+..    ....+|..|...|.+|+++++|+|++|.....++.+.|.+|+||+||+.
T Consensus       287 ~~~~~~~~~~p~vr~~~~~~~~~~~~~~~~~~~~~p~~~V~~~d~~G~il~~lhD~~g~~~~~~sev~E~dg~LyiGS~~  366 (376)
T KOG1520|consen  287 STLWRLLMKYPWVRKFIAKLPKYMELLYFLNNGGKPHSAVKLSDETGKILESLHDKEGKVITLVSEVGEHDGHLYIGSLF  366 (376)
T ss_pred             chHHHhhhcChHHHHHHHhhccchhhhhhhhccCCCceEEEEecCCCcEEEEEecCCCCceEEEEEEeecCCeEEEcccC
Confidence            999999999999999999987765432    1244567778888999999999999999888889999999999999999


Q ss_pred             CCeEEEEeCC
Q 017520          361 SNFIGKVQLS  370 (370)
Q Consensus       361 ~~~i~~~~~~  370 (370)
                      .+||+|++|.
T Consensus       367 ~p~i~~lkl~  376 (376)
T KOG1520|consen  367 NPYIARLKLP  376 (376)
T ss_pred             cceeEEEecC
Confidence            9999999974

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.95  E-value=4.3e-26  Score=203.87  Aligned_cols=227  Identities=27%  Similarity=0.442  Sum_probs=174.0

Q ss_pred             CcceEEcC-CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEc-CCCcEEEEeCCCceEEEc-CCC-eEEEEe
Q 017520           81 PEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        81 P~~i~~d~-~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d-~~G~L~v~~~~~gi~~~~-~~g-~~~~~~  153 (370)
                      ||+++.|+ +|.||+.+ .+++|++++  +++.+.+....  |. |++++ ++|.||+++. .++..++ .+| ++.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~-G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PN-GMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EE-EEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--Cc-eEEEEccCCEEEEEEc-CceEEEecCCCcEEEEee
Confidence            68889996 99999999 789999999  45555443333  88 99999 7899999985 5677778 677 777766


Q ss_pred             ecCCc-ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520          154 YVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~g~-~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      ...+. ++..+|++++|++|++||++.......         ....++|++++++ ++++.+..++..||||++++|++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence            54343 678999999999999999987421110         0011889999998 888888889999999999999999


Q ss_pred             EEEEeCCc--EEEEEeCCC--CCCceeeeccC--CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          233 VVVCESWK--CRKYWLKGE--RKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       233 l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      ||++++..  |++|+++..  .....+.+.+.  ..+.|||+++|++|+||++...+                       
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~-----------------------  204 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG-----------------------  204 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT-----------------------
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC-----------------------
Confidence            99999877  999999643  23444555432  22469999999999999999865                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--C-CEEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISL  359 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~~gs~  359 (370)
                                 +.|.+++++|+++..+..+..    .++.+++.  + ++|||.+-
T Consensus       205 -----------~~I~~~~p~G~~~~~i~~p~~----~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  205 -----------GRIVVFDPDGKLLREIELPVP----RPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             -----------TEEEEEETTSCEEEEEE-SSS----SEEEEEEESTTSSEEEEEEB
T ss_pred             -----------CEEEEECCCccEEEEEcCCCC----CEEEEEEECCCCCEEEEEeC
Confidence                       579999999999999988732    46777774  3 78999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.94  E-value=1.1e-23  Score=191.06  Aligned_cols=232  Identities=25%  Similarity=0.406  Sum_probs=177.5

Q ss_pred             EEcC-CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-e-EEEEeecCC
Q 017520           85 SMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V-ENFLSYVNG  157 (370)
Q Consensus        85 ~~d~-~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~-~~~~~~~~g  157 (370)
                      ..++ .+.||+.+ .+++|++++  +|+.+.+..+...+. +..++.+|.|++++.  |+++++ +++ . +.+.....+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeEEEEcc--ccEEEeccCCceeEEeccccCC
Confidence            4444 55577777 889999999  688888888888888 999998888988774  566666 555 4 777777678


Q ss_pred             cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      .+.+.+|++.++++|++||++..+ +.     ....+....|.|||+|+.++..+.+...+..||||+||||++.+|+++
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD  181 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD  181 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence            888999999999999999999863 11     233344567899999997555555555599999999999999999999


Q ss_pred             CCc--EEEEEeC---CCCCCce-eeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520          238 SWK--CRKYWLK---GERKGKL-ETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  311 (370)
Q Consensus       238 ~~~--l~~~~~~---~~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (370)
                      +..  |++|+.+   +...+.. ..+.+..+|.|||+++|.+|+||++...+                            
T Consensus       182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~----------------------------  233 (307)
T COG3386         182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG----------------------------  233 (307)
T ss_pred             CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC----------------------------
Confidence            975  9999887   3322221 23334567999999999999999754432                            


Q ss_pred             ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEEC---CEEEEEeCCCC
Q 017520          312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTSN  362 (370)
Q Consensus       312 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~~~  362 (370)
                           -+.|.+|+++|+.+..+..|..    .++..++.+   ++||+.+...+
T Consensus       234 -----g~~v~~~~pdG~l~~~i~lP~~----~~t~~~FgG~~~~~L~iTs~~~~  278 (307)
T COG3386         234 -----GGRVVRFNPDGKLLGEIKLPVK----RPTNPAFGGPDLNTLYITSARSG  278 (307)
T ss_pred             -----CceEEEECCCCcEEEEEECCCC----CCccceEeCCCcCEEEEEecCCC
Confidence                 1479999999999999998863    355555554   78999988873

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.89  E-value=1.1e-20  Score=161.52  Aligned_cols=239  Identities=15%  Similarity=0.150  Sum_probs=180.6

Q ss_pred             eEecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEec-CCCceeceEEcCCCcEEEEeCCCceEEEc-C
Q 017520           71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVS-E  145 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~  145 (370)
                      ..++...-..|..++.++||.+|++. ..|.|-++|  +|+++.+.-. +.+|+ +|.+++||..||+|...+|.|++ +
T Consensus        54 ~~fpvp~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~Witd~~~aI~R~dpk  132 (353)
T COG4257          54 AEFPVPNGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSAWITDTGLAIGRLDPK  132 (353)
T ss_pred             ceeccCCCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCeeEecCcceeEEecCc
Confidence            34444334689999999999999887 677899999  8999888654 45799 99999999999999888999999 5


Q ss_pred             CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccc
Q 017520          146 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANG  223 (370)
Q Consensus       146 ~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~g  223 (370)
                      +. ++.+.-. ........+..++|++|+|||+...                  |---|+||.++.++++. .....|+|
T Consensus       133 t~evt~f~lp-~~~a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyG  193 (353)
T COG4257         133 TLEVTRFPLP-LEHADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYG  193 (353)
T ss_pred             ccceEEeecc-cccCCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcc
Confidence            66 6665322 1222346778899999999999754                  22227888877777664 34567999


Q ss_pred             eEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHH
Q 017520          224 VALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKH  299 (370)
Q Consensus       224 i~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~  299 (370)
                      ||..+||. +|+++..+  |.++|....   ..+.+..  .+..-.+.+-.|+.|++|++++.+                
T Consensus       194 i~atpdGs-vwyaslagnaiaridp~~~---~aev~p~P~~~~~gsRriwsdpig~~wittwg~----------------  253 (353)
T COG4257         194 ICATPDGS-VWYASLAGNAIARIDPFAG---HAEVVPQPNALKAGSRRIWSDPIGRAWITTWGT----------------  253 (353)
T ss_pred             eEECCCCc-EEEEeccccceEEcccccC---CcceecCCCcccccccccccCccCcEEEeccCC----------------
Confidence            99999998 77776655  999986543   3333321  112234567789999999999876                


Q ss_pred             HHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          300 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                                        +.+.+||+.-+...+|.-++-+ -...+..++.-|++|+.....++|.|++
T Consensus       254 ------------------g~l~rfdPs~~sW~eypLPgs~-arpys~rVD~~grVW~sea~agai~rfd  303 (353)
T COG4257         254 ------------------GSLHRFDPSVTSWIEYPLPGSK-ARPYSMRVDRHGRVWLSEADAGAIGRFD  303 (353)
T ss_pred             ------------------ceeeEeCcccccceeeeCCCCC-CCcceeeeccCCcEEeeccccCceeecC
Confidence                              6799999988888899887644 3344556666699999999999999987

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.80  E-value=6.8e-17  Score=169.70  Aligned_cols=242  Identities=19%  Similarity=0.258  Sum_probs=170.6

Q ss_pred             CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCeEEEEEec---------------CCCceeceEEcCCCc-EEEEeCC
Q 017520           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWVNWKFI---------------DSQTLVGLTSTKEGH-LIICDNA  137 (370)
Q Consensus        77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~~~~~~~~---------------~~~p~~gl~~d~~G~-L~v~~~~  137 (370)
                      ++..|..+++|. +|+|||++ .+++|.+++ +|........               ...|. |++++++|+ |||+|..
T Consensus       566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaDt~  644 (1057)
T PLN02919        566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVADTE  644 (1057)
T ss_pred             cCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEeCC
Confidence            478899999996 68899999 778999999 7765443322               23589 999998775 8999976


Q ss_pred             -CceEEEc-CCC-eEEEEee------cCC------cccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceE
Q 017520          138 -NGLHKVS-EDG-VENFLSY------VNG------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       138 -~gi~~~~-~~g-~~~~~~~------~~g------~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                       +.|.+++ .++ ++.+...      ..+      ..++.|.++++++ +|.+||++.                 .+++|
T Consensus       645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----------------~~~~I  707 (1057)
T PLN02919        645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----------------GQHQI  707 (1057)
T ss_pred             CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----------------CCCeE
Confidence             4678888 566 6665431      011      1256889999999 679999986                 34678


Q ss_pred             EEEeCCCCeEEEEec---------------CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCce----------
Q 017520          202 LKYDPSSNITTLVAD---------------GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKL----------  254 (370)
Q Consensus       202 ~~~d~~t~~~~~~~~---------------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~----------  254 (370)
                      +++|..++.+..+..               .+..|+|+++++|++.+|+++..+  |.+|++++......          
T Consensus       708 ~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~  787 (1057)
T PLN02919        708 WEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDN  787 (1057)
T ss_pred             EEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcc
Confidence            888887666554321               245789999999999999999876  99999865321000          


Q ss_pred             -eeecc-------CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC
Q 017520          255 -ETFAE-------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED  326 (370)
Q Consensus       255 -~~~~~-------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~  326 (370)
                       ..+.+       ..-..|.++++|++|++||+...+                                  +.|.++|.+
T Consensus       788 l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N----------------------------------~rIrviD~~  833 (1057)
T PLN02919        788 LFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYN----------------------------------HKIKKLDPA  833 (1057)
T ss_pred             cccccCCCCchhhhhccCCceeeEeCCCcEEEEECCC----------------------------------CEEEEEECC
Confidence             00100       011258899999999999999765                                  458888987


Q ss_pred             CcEEEEEeCC------CC----CccccceeEEE-ECCEEEEEeCCCCeEEEEeCC
Q 017520          327 GTIIRNLVDP------TG----QLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       327 g~~~~~~~~~------~g----~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~~~  370 (370)
                      +..+..+...      +|    ..++.+..+.. .+|+||+++..++.|.+++++
T Consensus       834 tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        834 TKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             CCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence            6655544221      11    11234455554 468999999999999999863

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.78  E-value=8e-19  Score=128.11  Aligned_cols=86  Identities=52%  Similarity=0.950  Sum_probs=72.3

Q ss_pred             cceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--
Q 017520          164 NDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--  240 (370)
Q Consensus       164 ~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--  240 (370)
                      |+++++++ |.|||||+|++|+..++..+++|..++|+|++|||.|++++++.+++.+||||++++|+.+++++|+..  
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCce
Confidence            68899998 999999999999999999999999999999999999999999999999999999999999999999988  


Q ss_pred             EEEEEeCCC
Q 017520          241 CRKYWLKGE  249 (370)
Q Consensus       241 l~~~~~~~~  249 (370)
                      |.|||++|+
T Consensus        81 i~rywl~Gp   89 (89)
T PF03088_consen   81 ILRYWLKGP   89 (89)
T ss_dssp             EEEEESSST
T ss_pred             EEEEEEeCC
Confidence            999999875

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.68  E-value=2.2e-14  Score=123.24  Aligned_cols=238  Identities=11%  Similarity=0.086  Sum_probs=168.9

Q ss_pred             cCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCc----eeceEEcCCCcEEEEeCCCce-
Q 017520           68 QDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT----LVGLTSTKEGHLIICDNANGL-  140 (370)
Q Consensus        68 ~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p----~~gl~~d~~G~L~v~~~~~gi-  140 (370)
                      .++++++.|.-..|..|.+++||..|+.+....|.|++  ++++++|.-+..++    . ...||+.|+||..... |. 
T Consensus        93 Gev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nle-t~vfD~~G~lWFt~q~-G~y  170 (353)
T COG4257          93 GEVETYPLGSGASPHGIVVGPDGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLE-TAVFDPWGNLWFTGQI-GAY  170 (353)
T ss_pred             CceEEEecCCCCCCceEEECCCCCeeEecCcceeEEecCcccceEEeecccccCCCccc-ceeeCCCccEEEeecc-ccc
Confidence            36777777766789999999999999999655899999  77888886543332    3 5789999999998643 33 


Q ss_pred             EEEcC-CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--
Q 017520          141 HKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--  216 (370)
Q Consensus       141 ~~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--  216 (370)
                      -++|+ .+ ++++... .|   ..+++|++.+||.+|++.-                 ..+.|.++|+.++..+++..  
T Consensus       171 GrLdPa~~~i~vfpaP-qG---~gpyGi~atpdGsvwyasl-----------------agnaiaridp~~~~aev~p~P~  229 (353)
T COG4257         171 GRLDPARNVISVFPAP-QG---GGPYGICATPDGSVWYASL-----------------AGNAIARIDPFAGHAEVVPQPN  229 (353)
T ss_pred             eecCcccCceeeeccC-CC---CCCcceEECCCCcEEEEec-----------------cccceEEcccccCCcceecCCC
Confidence            26774 44 5554322 33   4789999999999999954                 23568999998886665432  


Q ss_pred             C-CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEecCchhHHHhhh
Q 017520          217 G-FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILN  292 (370)
Q Consensus       217 ~-~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~  292 (370)
                      . ......+-.|+.|+ +|+++.+.  +.+||+....   ...+- ......|..+.+|..|++|......         
T Consensus       230 ~~~~gsRriwsdpig~-~wittwg~g~l~rfdPs~~s---W~eypLPgs~arpys~rVD~~grVW~sea~a---------  296 (353)
T COG4257         230 ALKAGSRRIWSDPIGR-AWITTWGTGSLHRFDPSVTS---WIEYPLPGSKARPYSMRVDRHGRVWLSEADA---------  296 (353)
T ss_pred             cccccccccccCccCc-EEEeccCCceeeEeCccccc---ceeeeCCCCCCCcceeeeccCCcEEeecccc---------
Confidence            1 11223456678887 89988776  9999976432   22221 1222368889999999999988765         


Q ss_pred             cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          293 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                                               +.|.+||++...+..|..+.-.  .....+--+.|.+|++.-.-..+.+++
T Consensus       297 -------------------------gai~rfdpeta~ftv~p~pr~n--~gn~ql~gr~ge~W~~e~gvd~lv~~r  345 (353)
T COG4257         297 -------------------------GAIGRFDPETARFTVLPIPRPN--SGNIQLDGRPGELWFTEAGVDALVTTR  345 (353)
T ss_pred             -------------------------CceeecCcccceEEEecCCCCC--CCceeccCCCCceeecccCcceeEEEE
Confidence                                     5699999999999999776532  112233334589999988777776654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.64  E-value=4.9e-14  Score=148.30  Aligned_cols=187  Identities=16%  Similarity=0.237  Sum_probs=132.2

Q ss_pred             cCCCcceEEcCCC-cEEEEe-cCCeEEEEe--CCeEEEEEec-----------------CCCceeceEEcC-CCcEEEEe
Q 017520           78 VNHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFI-----------------DSQTLVGLTSTK-EGHLIICD  135 (370)
Q Consensus        78 ~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~~-----------------~~~p~~gl~~d~-~G~L~v~~  135 (370)
                      +..|.+|++|++| .|||++ .++.|.+++  ++.++++...                 ...|. ++++++ +|.|||++
T Consensus       623 f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~-gVa~dp~~g~LyVad  701 (1057)
T PLN02919        623 FNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPW-DVCFEPVNEKVYIAM  701 (1057)
T ss_pred             cCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCe-EEEEecCCCeEEEEE
Confidence            5679999999865 589998 567888898  5666655321                 23688 999998 67899998


Q ss_pred             CC-CceEEEc-CCC-eEEEEee-----cC-----CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceE
Q 017520          136 NA-NGLHKVS-EDG-VENFLSY-----VN-----GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       136 ~~-~gi~~~~-~~g-~~~~~~~-----~~-----g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                      .. +.|++++ .+| +..+...     ..     ...+..|++|+++++|. |||+|.                 .+++|
T Consensus       702 ~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-----------------~n~~I  764 (1057)
T PLN02919        702 AGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-----------------ESSSI  764 (1057)
T ss_pred             CCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-----------------CCCeE
Confidence            76 5688888 566 5444321     00     11356789999999986 999986                 45789


Q ss_pred             EEEeCCCCeEEEEec----------------------CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceee-
Q 017520          202 LKYDPSSNITTLVAD----------------------GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLET-  256 (370)
Q Consensus       202 ~~~d~~t~~~~~~~~----------------------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~-  256 (370)
                      .++|++++....+..                      .+..|.|++++++|+ +||++..+  |.+|+.++....+.-. 
T Consensus       765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEecc
Confidence            999987765443221                      134689999999998 99999877  9999986542111100 


Q ss_pred             ----ecc-----CCCCCCCceeECCCCCEEEEEecC
Q 017520          257 ----FAE-----NLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       257 ----~~~-----~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                          +.+     ..-..|.++++|++|++||+....
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N  879 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN  879 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence                000     011258999999999999998665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.61  E-value=1.4e-13  Score=130.02  Aligned_cols=166  Identities=23%  Similarity=0.282  Sum_probs=118.9

Q ss_pred             eEecCC-CcCCCcceEEcCCCcEEEEec------------CC-eEEEEe----CCe---EEEEEecCCCceeceEEcCCC
Q 017520           71 IKVGEG-SVNHPEDASMDKNGVIYTATR------------DG-WIKRLQ----DGT---WVNWKFIDSQTLVGLTSTKEG  129 (370)
Q Consensus        71 ~~~~~~-~~~~P~~i~~d~~G~l~v~~~------------~g-~I~~~~----~g~---~~~~~~~~~~p~~gl~~d~~G  129 (370)
                      +.++.. .+..|..|++|++|+|||++.            .+ +|++++    +|+   .+.+......|. ||++.++|
T Consensus         5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G   83 (367)
T TIGR02604         5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG   83 (367)
T ss_pred             EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence            444433 478999999999999999962            23 899997    354   466676777899 99999888


Q ss_pred             cEEEEeCCCceEEEc-CC------C-eEEEEeecCCc---ccccccceEEcCCCcEEEEeCCCCCCC--ccceecccccC
Q 017520          130 HLIICDNANGLHKVS-ED------G-VENFLSYVNGS---KLRFANDVVEASDGSLYFTVSSSKYLP--HEYCLDILEGK  196 (370)
Q Consensus       130 ~L~v~~~~~gi~~~~-~~------g-~~~~~~~~~g~---~~~~~~~l~~d~~G~l~v~d~~~~~~~--~~~~~~~~~~~  196 (370)
                       |||++. ..|+++. .+      + .+.+.......   ..+.++++++++||+|||++.+.....  ........+..
T Consensus        84 -lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        84 -VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             -EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence             999874 4688884 32      2 33454443332   346789999999999999987421100  00000111223


Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      ..+.++|+++++++.+++..++.+|+|++++++|+ +|+++...
T Consensus       162 ~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn~~  204 (367)
T TIGR02604       162 LGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDNDD  204 (367)
T ss_pred             cCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEccCC
Confidence            45789999999999999999999999999999998 78888754

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.49  E-value=2.1e-12  Score=115.36  Aligned_cols=142  Identities=20%  Similarity=0.376  Sum_probs=105.8

Q ss_pred             CcCCCcceEEcCCCcEEEEecC---------CeEEEEe-CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc
Q 017520           77 SVNHPEDASMDKNGVIYTATRD---------GWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS  144 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~~~---------g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~  144 (370)
                      .+..|.++++|++|++|+++..         |+|++++ +++.+........|+ ||++++||+ ||+++.. +.|++++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence            4678999999999999999831         6799999 878777777778899 999999995 8999877 5689988


Q ss_pred             -C-CC--e---EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC
Q 017520          145 -E-DG--V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG  217 (370)
Q Consensus       145 -~-~g--~---~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~  217 (370)
                       . .+  +   +.+... .+. ...|.+|++|++|+||++..                 ..++|+++|+++.....+...
T Consensus       163 ~~~~~~~~~~~~~~~~~-~~~-~g~pDG~~vD~~G~l~va~~-----------------~~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDF-PGG-PGYPDGLAVDSDGNLWVADW-----------------GGGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EETTTCCEEEEEEEEE--SSS-SCEEEEEEEBTTS-EEEEEE-----------------TTTEEEEEETTSCEEEEEE-S
T ss_pred             ccccccceeeeeeEEEc-CCC-CcCCCcceEcCCCCEEEEEc-----------------CCCEEEEECCCccEEEEEcCC
Confidence             2 23  2   222222 221 14689999999999999975                 357999999995555555555


Q ss_pred             CCCccceEE-ccCCCEEEEEeC
Q 017520          218 FYFANGVAL-SRDEDYVVVCES  238 (370)
Q Consensus       218 ~~~p~gi~~-~~dg~~l~v~~~  238 (370)
                      ...|..++| .+|.+.||++..
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCEEEEEEECCCCCEEEEEeC
Confidence            568999999 468788999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.48  E-value=2.8e-11  Score=102.05  Aligned_cols=222  Identities=19%  Similarity=0.198  Sum_probs=140.0

Q ss_pred             CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC--cEEEEeCCCceEEEcCCC----eEEEEe---ecC
Q 017520           89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNANGLHKVSEDG----VENFLS---YVN  156 (370)
Q Consensus        89 ~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~~~~~gi~~~~~~g----~~~~~~---~~~  156 (370)
                      .+.||..+ ..|.|.|+|  ..++.... ..+.|..|..+--.|  ..++..-+.....++-+|    ...+..   ..+
T Consensus        26 ~~sLl~VDi~ag~v~r~D~~qn~v~ra~-ie~p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   26 RQSLLYVDIEAGEVHRYDIEQNKVYRAK-IEGPPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             cceEEEEEeccCceehhhhhhhheEEEE-EecCcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            34555555 888999998  43332211 112222143332222  355544343333333222    222222   223


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~  236 (370)
                      ...-+..|+--+||+|+.|.+..+.. +      +.+| ...+.||++-+ .++++.+......+||++||.|.+.+|+.
T Consensus       105 d~kknR~NDgkvdP~Gryy~GtMad~-~------~~le-~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~i  175 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRYYGGTMADF-G------DDLE-PIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYI  175 (310)
T ss_pred             hHHhcccccCccCCCCceeeeeeccc-c------cccc-ccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEE
Confidence            33345678889999999998866411 1      1111 12345555554 48888888889999999999999999999


Q ss_pred             eCCc--E--EEEEeCCCCCCceeeeccC------CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          237 ESWK--C--RKYWLKGERKGKLETFAEN------LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       237 ~~~~--l--~~~~~~~~~~~~~~~~~~~------~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      ++.+  |  +.||..++...+++.+.+.      .+-.|||+++|.+|++||++..+                       
T Consensus       176 Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng-----------------------  232 (310)
T KOG4499|consen  176 DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG-----------------------  232 (310)
T ss_pred             ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC-----------------------
Confidence            9988  7  5566776655555544321      23479999999999999999987                       


Q ss_pred             cccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECC---EEEEEe
Q 017520          307 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN---HLYVIS  358 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g---~L~~gs  358 (370)
                                 +.|+++|+ .|+++..+.-|.-    -+|+.++.+.   -||+.+
T Consensus       233 -----------~~V~~~dp~tGK~L~eiklPt~----qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  233 -----------GTVQKVDPTTGKILLEIKLPTP----QITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             -----------cEEEEECCCCCcEEEEEEcCCC----ceEEEEecCCCccEEEEEe
Confidence                       67999997 6999998877653    3677776653   466654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=6.7e-11  Score=110.98  Aligned_cols=249  Identities=20%  Similarity=0.290  Sum_probs=153.0

Q ss_pred             ccccCceEecCCCcCCCcceEEcCCC-cEEEEec----CCeEEEEe---C-CeEEEEE---ecCCCceeceEEcCCCc-E
Q 017520           65 TQLQDFIKVGEGSVNHPEDASMDKNG-VIYTATR----DGWIKRLQ---D-GTWVNWK---FIDSQTLVGLTSTKEGH-L  131 (370)
Q Consensus        65 ~~l~~~~~~~~~~~~~P~~i~~d~~G-~l~v~~~----~g~I~~~~---~-g~~~~~~---~~~~~p~~gl~~d~~G~-L  131 (370)
                      ..|.....+..  ..+|..+++++++ .||+.+.    .|.|..+.   + |+++...   ..+..|. .++++++|+ |
T Consensus        25 g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~-~i~~~~~g~~l  101 (345)
T PF10282_consen   25 GTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC-HIAVDPDGRFL  101 (345)
T ss_dssp             TEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE-EEEECTTSSEE
T ss_pred             CCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE-EEEEecCCCEE
Confidence            34444444333  3689999999755 6888875    46888777   4 7766543   2456688 899999996 8


Q ss_pred             EEEeCCCc-e--EEEcCCC-eEEEEeec---------CCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCC
Q 017520          132 IICDNANG-L--HKVSEDG-VENFLSYV---------NGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKP  197 (370)
Q Consensus       132 ~v~~~~~g-i--~~~~~~g-~~~~~~~~---------~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~  197 (370)
                      |++.+..| +  +.++.+| +.......         ......+++.+.++|||+ +|++|.                 +
T Consensus       102 ~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----------------G  164 (345)
T PF10282_consen  102 YVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----------------G  164 (345)
T ss_dssp             EEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----------------T
T ss_pred             EEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----------------C
Confidence            88887654 4  3444567 43321110         012235788999999985 888875                 3


Q ss_pred             CceEEEEeCCCCe--EEE----EecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCC--CCCCceeeeccCCC----C
Q 017520          198 HGQLLKYDPSSNI--TTL----VADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKG--ERKGKLETFAENLP----G  263 (370)
Q Consensus       198 ~g~l~~~d~~t~~--~~~----~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~--~~~~~~~~~~~~~~----g  263 (370)
                      ..+|+.|+.+...  +..    .......|..+++++|++.+|+.+...  |.+|+++.  ........+ ..++    +
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~  243 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTI-STLPEGFTG  243 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESCETTSCS
T ss_pred             CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEe-eeccccccc
Confidence            4567776654333  433    234556789999999999999998765  88887762  222111111 1221    1


Q ss_pred             --CCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEE--EeCCC
Q 017520          264 --APDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRN--LVDPT  337 (370)
Q Consensus       264 --~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~--~~~~~  337 (370)
                        .+..|++++||+ +|++..+..                                .-.++.+|++ |++...  +.. .
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr~~~--------------------------------sI~vf~~d~~~g~l~~~~~~~~-~  290 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNRGSN--------------------------------SISVFDLDPATGTLTLVQTVPT-G  290 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEECTTT--------------------------------EEEEEEECTTTTTEEEEEEEEE-S
T ss_pred             cCCceeEEEecCCCEEEEEeccCC--------------------------------EEEEEEEecCCCceEEEEEEeC-C
Confidence              466799999996 788765531                                2346666544 555432  322 2


Q ss_pred             CCccccceeEEE--ECCEEEEEeCCCCeEEEEeCC
Q 017520          338 GQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       338 g~~~~~~t~~~~--~~g~L~~gs~~~~~i~~~~~~  370 (370)
                      |.   ....+..  .+..||+++..++.|.++++|
T Consensus       291 G~---~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  291 GK---FPRHFAFSPDGRYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SS---SEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CC---CccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence            33   3445544  347899999999999998763

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.45  E-value=2.5e-10  Score=106.52  Aligned_cols=235  Identities=13%  Similarity=0.152  Sum_probs=140.8

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe---CCeEEEEE--ecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CCC
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~---~g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~g  147 (370)
                      .+|..++++++|+ ||+++ .++.|..|+   +|+++...  ...+.|. .++++++|+ ||++... +.+..++  ++|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            4799999999885 78887 567787666   45554322  2345788 999999996 7887754 3455555  455


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEE------EecCC
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL------VADGF  218 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~------~~~~~  218 (370)
                       .........+  ...++.++++++|+ +|+++.                 ..+.|..||.++ +.+..      .....
T Consensus       114 ~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~-----------------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g  174 (330)
T PRK11028        114 IPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCL-----------------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG  174 (330)
T ss_pred             CCCCceeeccC--CCcccEeEeCCCCCEEEEeeC-----------------CCCEEEEEEECCCCcccccCCCceecCCC
Confidence             3222121222  23578889999985 777764                 346788887654 32211      11223


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccCC------CCCCCceeECCCCC-EEEEEecCchhH
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAENL------PGAPDNINLAPDGT-FWIAIIKLDARR  287 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~~------~g~p~~i~~d~~G~-lwv~~~~~~~~~  287 (370)
                      ..|.++++++||+.+|+++...  |..|+++..  +......+. ..      +..+..+.++++|+ +|++....+   
T Consensus       175 ~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~---  250 (330)
T PRK11028        175 AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPADFSDTRWAADIHITPDGRHLYACDRTAS---  250 (330)
T ss_pred             CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCCcCCCCccceeEEECCCCCEEEEecCCCC---
Confidence            5688999999999999998744  888887632  211111111 11      11334588999996 777643321   


Q ss_pred             HHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC-CCCCccccceeEEE--ECCEEEEEeCCCCeE
Q 017520          288 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD-PTGQLMSFVTSGLQ--VDNHLYVISLTSNFI  364 (370)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~-~~g~~~~~~t~~~~--~~g~L~~gs~~~~~i  364 (370)
                                                   .-.++.+++++..+..... +.|.   ....+..  ++..||+++...+.|
T Consensus       251 -----------------------------~I~v~~i~~~~~~~~~~~~~~~~~---~p~~~~~~~dg~~l~va~~~~~~v  298 (330)
T PRK11028        251 -----------------------------LISVFSVSEDGSVLSFEGHQPTET---QPRGFNIDHSGKYLIAAGQKSHHI  298 (330)
T ss_pred             -----------------------------eEEEEEEeCCCCeEEEeEEEeccc---cCCceEECCCCCEEEEEEccCCcE
Confidence                                         1235555666543332211 1121   1222332  346788888878888


Q ss_pred             EEEeC
Q 017520          365 GKVQL  369 (370)
Q Consensus       365 ~~~~~  369 (370)
                      .++++
T Consensus       299 ~v~~~  303 (330)
T PRK11028        299 SVYEI  303 (330)
T ss_pred             EEEEE
Confidence            88765

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.33  E-value=1.1e-09  Score=102.77  Aligned_cols=196  Identities=18%  Similarity=0.232  Sum_probs=120.8

Q ss_pred             cccCceEecCCCcCCCcceEEcCCC-cEEEEe-cCCeEEEEe---CCeEEEEE--------------ecCCCceeceEEc
Q 017520           66 QLQDFIKVGEGSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVNWK--------------FIDSQTLVGLTST  126 (370)
Q Consensus        66 ~l~~~~~~~~~~~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~---~g~~~~~~--------------~~~~~p~~gl~~d  126 (370)
                      .|.....+... -..|..|++|++| .||+++ .+|.|..++   +|++....              .....|+ .+.++
T Consensus        75 ~L~~~~~~~~~-g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~  152 (345)
T PF10282_consen   75 TLTLLNSVPSG-GSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFS  152 (345)
T ss_dssp             EEEEEEEEEES-SSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-
T ss_pred             eeEEeeeeccC-CCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEEC
Confidence            34444444422 2589999999877 578887 678887777   56544321              0134578 89999


Q ss_pred             CCCc-EEEEeCC-CceEEEc--C-CC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCc
Q 017520          127 KEGH-LIICDNA-NGLHKVS--E-DG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHG  199 (370)
Q Consensus       127 ~~G~-L~v~~~~-~gi~~~~--~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g  199 (370)
                      ++|+ +|+++.+ ..|+.++  . .+ +...... .-.....|..++++++| .+|+.+..                 .+
T Consensus       153 pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~-~~~~G~GPRh~~f~pdg~~~Yv~~e~-----------------s~  214 (345)
T PF10282_consen  153 PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI-KVPPGSGPRHLAFSPDGKYAYVVNEL-----------------SN  214 (345)
T ss_dssp             TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE-ECSTTSSEEEEEE-TTSSEEEEEETT-----------------TT
T ss_pred             CCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc-ccccCCCCcEEEEcCCcCEEEEecCC-----------------CC
Confidence            9996 8998876 4566666  2 33 4332211 11223578999999998 58888652                 34


Q ss_pred             eEE--EEeCCCCeEEEEe------c---CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccCCCCC
Q 017520          200 QLL--KYDPSSNITTLVA------D---GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAENLPGA  264 (370)
Q Consensus       200 ~l~--~~d~~t~~~~~~~------~---~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~~~g~  264 (370)
                      .|.  .++.+++.++...      .   +...+.+|++++||++||+++.+.  |..|+++..  +......+ ......
T Consensus       215 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~  293 (345)
T PF10282_consen  215 TVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKF  293 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSS
T ss_pred             cEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCC
Confidence            444  4444456554432      1   123578899999999999999887  888988532  22222222 222346


Q ss_pred             CCceeECCCCC-EEEEEec
Q 017520          265 PDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       265 p~~i~~d~~G~-lwv~~~~  282 (370)
                      |++++++++|+ +||+...
T Consensus       294 Pr~~~~s~~g~~l~Va~~~  312 (345)
T PF10282_consen  294 PRHFAFSPDGRYLYVANQD  312 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETT
T ss_pred             ccEEEEeCCCCEEEEEecC
Confidence            99999999997 6666544

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=7.8e-09  Score=92.60  Aligned_cols=242  Identities=15%  Similarity=0.203  Sum_probs=149.8

Q ss_pred             cCCCcceEEcCCC-cEEEEec---CCeEEEEe----CCeEEEEEec--CC-CceeceEEcCCCc-EEEEeCCCceEEEc-
Q 017520           78 VNHPEDASMDKNG-VIYTATR---DGWIKRLQ----DGTWVNWKFI--DS-QTLVGLTSTKEGH-LIICDNANGLHKVS-  144 (370)
Q Consensus        78 ~~~P~~i~~d~~G-~l~v~~~---~g~I~~~~----~g~~~~~~~~--~~-~p~~gl~~d~~G~-L~v~~~~~gi~~~~-  144 (370)
                      +.+|.-|++++++ .||++..   .|+|..+.    +|+++.....  .+ .|. -+++|++|+ |+++.+..|.+.+- 
T Consensus        39 ~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~-yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          39 LGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPC-YVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             cCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCe-EEEECCCCCEEEEEEccCceEEEEE
Confidence            5689999999877 7998873   56776665    4777765432  23 346 799999996 67777666644443 


Q ss_pred             --CCC-eEEEEe---ecCC-----cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          145 --EDG-VENFLS---YVNG-----SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       145 --~~g-~~~~~~---~~~g-----~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                        .+| +.....   ....     ....+++...++|+|+ |++.|-                 +..+++.|+.+.+..+
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-----------------G~Dri~~y~~~dg~L~  180 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-----------------GTDRIFLYDLDDGKLT  180 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-----------------CCceEEEEEcccCccc
Confidence              567 333221   1111     1123467788999995 555554                 4467888877766655


Q ss_pred             EEe----cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec--cCCCC-C-----CCceeECCCCCEEE
Q 017520          213 LVA----DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA--ENLPG-A-----PDNINLAPDGTFWI  278 (370)
Q Consensus       213 ~~~----~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~--~~~~g-~-----p~~i~~d~~G~lwv  278 (370)
                      ...    .....|.-|+|+|+++..|+...-+  |.+|..+.. .++++.+.  ..+|. +     ...|.+++||++..
T Consensus       181 ~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLY  259 (346)
T COG2706         181 PADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLY  259 (346)
T ss_pred             cccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEE
Confidence            432    3456788899999999999886544  555544432 23333221  12221 1     12377899998666


Q ss_pred             EEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE--eCCCCCccccceeEEEECCEEEE
Q 017520          279 AIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL--VDPTGQLMSFVTSGLQVDNHLYV  356 (370)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~--~~~~g~~~~~~t~~~~~~g~L~~  356 (370)
                      +++.+.+                               .-.++++|++|..+...  ....|+ ..---.+...++.|+.
T Consensus       260 asNRg~d-------------------------------sI~~f~V~~~~g~L~~~~~~~teg~-~PR~F~i~~~g~~Lia  307 (346)
T COG2706         260 ASNRGHD-------------------------------SIAVFSVDPDGGKLELVGITPTEGQ-FPRDFNINPSGRFLIA  307 (346)
T ss_pred             EecCCCC-------------------------------eEEEEEEcCCCCEEEEEEEeccCCc-CCccceeCCCCCEEEE
Confidence            6655422                               13478889987765543  333444 1111233334567999


Q ss_pred             EeCCCCeEEEEeCC
Q 017520          357 ISLTSNFIGKVQLS  370 (370)
Q Consensus       357 gs~~~~~i~~~~~~  370 (370)
                      .+-+++.|.++..|
T Consensus       308 a~q~sd~i~vf~~d  321 (346)
T COG2706         308 ANQKSDNITVFERD  321 (346)
T ss_pred             EccCCCcEEEEEEc
Confidence            99999989888754

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.25  E-value=2e-10  Score=108.08  Aligned_cols=139  Identities=17%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecC--CCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEee
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~  154 (370)
                      -..+.+|.+|.+|+|+.+| +++|+  .|+........  ...+ .+..|..|+|||++ ..|++..++-|  +....  
T Consensus       167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~LWVGT-dqGv~~~e~~G~~~sn~~--  241 (671)
T COG3292         167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRLWVGT-DQGVYLQEAEGWRASNWG--  241 (671)
T ss_pred             ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcEEEEe-ccceEEEchhhccccccC--
Confidence            4457889999999999887 99999  56655443322  2345 67888899999997 46999998655  32221  


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe----cCCCCccceEEccCC
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA----DGFYFANGVALSRDE  230 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~----~~~~~p~gi~~~~dg  230 (370)
                       ...+...+..+..|.+|++||++.                   .++.|+....+.+....    .+....+++..|.||
T Consensus       242 -~~lp~~~I~ll~qD~qG~lWiGTe-------------------nGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~dG  301 (671)
T COG3292         242 -PMLPSGNILLLVQDAQGELWIGTE-------------------NGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTDG  301 (671)
T ss_pred             -CCCcchheeeeecccCCCEEEeec-------------------ccceeEecCCCCccccccccCCccccccceeeccCC
Confidence             223345667788899999999965                   34666654433333221    123345788888999


Q ss_pred             CEEEEEeCCcEEEEE
Q 017520          231 DYVVVCESWKCRKYW  245 (370)
Q Consensus       231 ~~l~v~~~~~l~~~~  245 (370)
                      . +|+...+++++|.
T Consensus       302 s-LWv~t~~giv~~~  315 (671)
T COG3292         302 S-LWVGTYGGIVRYL  315 (671)
T ss_pred             C-EeeeccCceEEEe
Confidence            8 8888887766654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=8.4e-09  Score=92.40  Aligned_cols=187  Identities=18%  Similarity=0.281  Sum_probs=120.2

Q ss_pred             CCCcceEEcCCC-cEEEEe-cCCeEEEEe---CCeEEE----EEecCC---------CceeceEEcCCCc-EEEEeCC-C
Q 017520           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ---DGTWVN----WKFIDS---------QTLVGLTSTKEGH-LIICDNA-N  138 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~-~~g~I~~~~---~g~~~~----~~~~~~---------~p~~gl~~d~~G~-L~v~~~~-~  138 (370)
                      ..|..|++|++| .|++++ ..|.|.++.   +|.+..    ......         .++ ...++|+|+ |++.|-+ .
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            467999999999 567777 556666665   665332    222222         145 677889995 7777766 5


Q ss_pred             ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       139 gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                      .|+.++ .+| ++..... .-.+...|..|++.|+|+ .|+....               ...=-++.||+..++++.+.
T Consensus       168 ri~~y~~~dg~L~~~~~~-~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         168 RIFLYDLDDGKLTPADPA-EVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eEEEEEcccCcccccccc-ccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEee
Confidence            777777 667 4433221 112335788999999996 6766531               12234667777667776553


Q ss_pred             c---------CCCCccceEEccCCCEEEEEeCCc--EEEEEeC--CCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          216 D---------GFYFANGVALSRDEDYVVVCESWK--CRKYWLK--GERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       216 ~---------~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~--~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      .         +......|.+++||++||+++++.  |..|.++  +.++...+ ........|+.+.+++.|++.++.++
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~PR~F~i~~~g~~Liaa~q  310 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQFPRDFNINPSGRFLIAANQ  310 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcCCccceeCCCCCEEEEEcc
Confidence            2         223345688999999999999987  6555554  43332222 22233335999999999998888876


Q ss_pred             C
Q 017520          283 L  283 (370)
Q Consensus       283 ~  283 (370)
                      .
T Consensus       311 ~  311 (346)
T COG2706         311 K  311 (346)
T ss_pred             C
Confidence            4

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.23  E-value=1.9e-08  Score=93.88  Aligned_cols=170  Identities=11%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             cEEEEe-cCCeEEEEe---CCeEEEE--EecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CCC-eEEEEeecCCcc
Q 017520           91 VIYTAT-RDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG-VENFLSYVNGSK  159 (370)
Q Consensus        91 ~l~v~~-~~g~I~~~~---~g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~g-~~~~~~~~~g~~  159 (370)
                      .+|+++ .++.|..|+   +|+++..  ....+.|. .++++++|+ ||++... .+|..++  ++| ++.......+  
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~-~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~--   79 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQ-PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLP--   79 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCc-cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCC--
Confidence            478886 577898888   3554332  23446688 999999996 7888654 5675555  456 5433222111  


Q ss_pred             cccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeE-E--EEecCCCCccceEEccCCCEEE
Q 017520          160 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NIT-T--LVADGFYFANGVALSRDEDYVV  234 (370)
Q Consensus       160 ~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~-~--~~~~~~~~p~gi~~~~dg~~l~  234 (370)
                       ..|..++++++|+ +|++..                 ..+.|..|+.++ +.. +  ....+...|.++++++|++.+|
T Consensus        80 -~~p~~i~~~~~g~~l~v~~~-----------------~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~  141 (330)
T PRK11028         80 -GSPTHISTDHQGRFLFSASY-----------------NANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLW  141 (330)
T ss_pred             -CCceEEEECCCCCEEEEEEc-----------------CCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEE
Confidence             2577899999996 666643                 236667776542 211 1  1123445788999999999999


Q ss_pred             EEeCCc--EEEEEeCCCC-CCc--eeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520          235 VCESWK--CRKYWLKGER-KGK--LETFAENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       235 v~~~~~--l~~~~~~~~~-~~~--~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      +++.+.  |..|+++... ...  ...........|+.++++++|+ +|++..
T Consensus       142 v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        142 VPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             EeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence            999875  9999986421 110  0011101233588999999996 667654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.21  E-value=5.7e-09  Score=97.11  Aligned_cols=158  Identities=20%  Similarity=0.318  Sum_probs=102.3

Q ss_pred             cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeE-EEEEec-------CCCceeceEEcCC----CcEEEEeCC-------
Q 017520           78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTW-VNWKFI-------DSQTLVGLTSTKE----GHLIICDNA-------  137 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~-~~~~~~-------~~~p~~gl~~d~~----G~L~v~~~~-------  137 (370)
                      |..|.+|++.+||++||+...|+|++++ +|.. ..+...       ....+ |++++++    +.||++...       
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~lYv~~t~~~~~~~~   79 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYLYVYYTNADEDGGD   79 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEEEEEEEcccCCCCC
Confidence            4689999999999999999999999999 7765 333221       12356 9999984    889998652       


Q ss_pred             --CceEEEc--CC-C----eEEEEeecCC--cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          138 --NGLHKVS--ED-G----VENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       138 --~gi~~~~--~~-g----~~~~~~~~~g--~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                        ..|.++.  .+ .    .+.+....+.  ...+....|++++||.|||+......  .....+  .....|.|+|+++
T Consensus        80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~~--~~~~~G~ilri~~  155 (331)
T PF07995_consen   80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQD--PNSLRGKILRIDP  155 (331)
T ss_dssp             EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGCS--TTSSTTEEEEEET
T ss_pred             cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--cccccc--cccccceEEEecc
Confidence              2477766  23 1    2333332222  23456677999999999999764221  111111  1234689999998


Q ss_pred             CCC-------------eEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          207 SSN-------------ITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       207 ~t~-------------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      ++.             ..++++.++++|.++++++....||+++.+.
T Consensus       156 dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~  202 (331)
T PF07995_consen  156 DGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGP  202 (331)
T ss_dssp             TSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-S
T ss_pred             cCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCC
Confidence            754             3467788999999999999934499998654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.19  E-value=2.6e-09  Score=97.45  Aligned_cols=145  Identities=19%  Similarity=0.345  Sum_probs=104.1

Q ss_pred             CCcCCCcceEEcCCCcEEEEecC------------CeEEEEe-CCeEEEEEec-CCCceeceEEcCCC-cEEEEeCC-Cc
Q 017520           76 GSVNHPEDASMDKNGVIYTATRD------------GWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEG-HLIICDNA-NG  139 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~~~------------g~I~~~~-~g~~~~~~~~-~~~p~~gl~~d~~G-~L~v~~~~-~g  139 (370)
                      .+...|.++.+|++|.+|+++..            |.||+++ .|..++.... ...|+ ||++++|| .||++|+. ..
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCe
Confidence            34578999999999999999854            5699999 7766665544 66789 99999999 69999987 57


Q ss_pred             eEEEc-C--CC----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          140 LHKVS-E--DG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       140 i~~~~-~--~g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      |++++ .  ++    .......  ...-..|.++++|.+|++|++...                ..++|.+|+|+.....
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~~--~~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~  248 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVDF--DEEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG  248 (307)
T ss_pred             EEEEecCcccCccCCcceEEEc--cCCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence            88887 3  23    1111111  112247889999999999975321                2248999999955555


Q ss_pred             EEecCCCCccceEEc-cCCCEEEEEeCC
Q 017520          213 LVADGFYFANGVALS-RDEDYVVVCESW  239 (370)
Q Consensus       213 ~~~~~~~~p~gi~~~-~dg~~l~v~~~~  239 (370)
                      .+.-....+..++|- ++.+.||++...
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~~  276 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSAR  276 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEecC
Confidence            554444566667764 567889998864

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.18  E-value=1.1e-07  Score=86.72  Aligned_cols=180  Identities=15%  Similarity=0.119  Sum_probs=110.7

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eE
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VE  149 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~  149 (370)
                      ..|.+++++++|. +|++. .++.|..++  +++..........+. .++++++|+ +|++... +.+..++ .++  +.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            3588899999886 66654 678899999  555543333334466 788999987 6676543 4566677 444  22


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      .+.   .+   ..+.+++++++|.+++....                ....++.+|..+++..........|..+++++|
T Consensus       110 ~~~---~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~d  167 (300)
T TIGR03866       110 EIP---VG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTAD  167 (300)
T ss_pred             Eee---CC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCC
Confidence            221   11   24678999999987766432                123466678876655432222345778999999


Q ss_pred             CCEEEEEeC-Cc-EEEEEeCCCCCCceeeec-cC---CCCCCCceeECCCCCE-EEEEe
Q 017520          230 EDYVVVCES-WK-CRKYWLKGERKGKLETFA-EN---LPGAPDNINLAPDGTF-WIAII  281 (370)
Q Consensus       230 g~~l~v~~~-~~-l~~~~~~~~~~~~~~~~~-~~---~~g~p~~i~~d~~G~l-wv~~~  281 (370)
                      ++.++++.. .+ |..||+.+.+......+. ..   ....|.+++++++|+. |++..
T Consensus       168 g~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~  226 (300)
T TIGR03866       168 GKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG  226 (300)
T ss_pred             CCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence            998877754 44 888998654221111110 00   1113567889999975 66653

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=99.18  E-value=1e-09  Score=103.45  Aligned_cols=203  Identities=16%  Similarity=0.216  Sum_probs=122.4

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCccc-ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~-~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  198 (370)
                      .+.+|..|+|||+. .+|+++|+ ..| .-.+...    ++ ..++.+..|-.|++||++.                   
T Consensus       169 aLv~D~~g~lWvgT-~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTd-------------------  224 (671)
T COG3292         169 ALVFDANGRLWVGT-PDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTD-------------------  224 (671)
T ss_pred             eeeeeccCcEEEec-CCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEec-------------------
Confidence            57889999999987 46999999 456 4433222    22 4678889999999999954                   


Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccc----eEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCC--CCCceeECC
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANG----VALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPG--APDNINLAP  272 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~g----i~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g--~p~~i~~d~  272 (370)
                      .+++++++.+....  ..+...|.+    +.-|.+|. +|+....+++|+..+........  .....+  ....+..|.
T Consensus       225 qGv~~~e~~G~~~s--n~~~~lp~~~I~ll~qD~qG~-lWiGTenGl~r~~l~rq~Lq~~~--~~~~l~~S~vnsL~~D~  299 (671)
T COG3292         225 QGVYLQEAEGWRAS--NWGPMLPSGNILLLVQDAQGE-LWIGTENGLWRTRLPRQGLQIPL--SKMHLGVSTVNSLWLDT  299 (671)
T ss_pred             cceEEEchhhcccc--ccCCCCcchheeeeecccCCC-EEEeecccceeEecCCCCccccc--cccCCccccccceeecc
Confidence            57999988763332  233344443    34466776 77777777888876544222111  112222  235688999


Q ss_pred             CCCEEEEEecCchhHHHhhhcchhHHH------------HHHhCCccccc-cccCCCceEEEEEC-CCCcEEEEEeCCCC
Q 017520          273 DGTFWIAIIKLDARRMKILNSSKLIKH------------VLAAYPKLFSQ-FITLGGGAHLIHVA-EDGTIIRNLVDPTG  338 (370)
Q Consensus       273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~g~v~~~~-~~g~~~~~~~~~~g  338 (370)
                      +|++|+++..+-..+.    ..++++.            .....|+...+ ..+....|.+...+ ..|.++++.+...|
T Consensus       300 dGsLWv~t~~giv~~~----~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG~~v~sv~q~Rg  375 (671)
T COG3292         300 DGSLWVGTYGGIVRYL----TADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTGELVRSVHQLRG  375 (671)
T ss_pred             CCCEeeeccCceEEEe----cchhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCCcEEEEeeeccc
Confidence            9999999987532111    1122221            12223333222 12233444555555 46888887655555


Q ss_pred             CccccceeEEEE-CCEEEEEeCC
Q 017520          339 QLMSFVTSGLQV-DNHLYVISLT  360 (370)
Q Consensus       339 ~~~~~~t~~~~~-~g~L~~gs~~  360 (370)
                      .   .++.++++ ++.+|+||..
T Consensus       376 ~---nit~~~~d~~g~lWlgs~q  395 (671)
T COG3292         376 M---NITTTLEDSRGRLWLGSMQ  395 (671)
T ss_pred             c---ccchhhhccCCcEEEEecc
Confidence            3   34555544 6899999976

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.15  E-value=4.3e-08  Score=99.79  Aligned_cols=190  Identities=18%  Similarity=0.255  Sum_probs=127.7

Q ss_pred             CCCcceEEcC-CCcEEEEe-cCCeEEEEe--C-----CeEEEEEe----------cCC-----------CceeceEEcCC
Q 017520           79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ--D-----GTWVNWKF----------IDS-----------QTLVGLTSTKE  128 (370)
Q Consensus        79 ~~P~~i~~d~-~G~l~v~~-~~g~I~~~~--~-----g~~~~~~~----------~~~-----------~p~~gl~~d~~  128 (370)
                      ..-..||+|+ +|.||+++ ...+|+|+.  .     +.++..+.          .||           .|. ||++|.+
T Consensus       407 sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk~  485 (1899)
T KOG4659|consen  407 SHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDKM  485 (1899)
T ss_pred             cceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEccC
Confidence            3445699998 99999999 557899987  1     23444431          122           478 9999999


Q ss_pred             CcEEEEeCCCceEEEcCCC-eEEEEeec---------------CCcccccccceEEcC-CCcEEEEeCCCCCCCccceec
Q 017520          129 GHLIICDNANGLHKVSEDG-VENFLSYV---------------NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       129 G~L~v~~~~~gi~~~~~~g-~~~~~~~~---------------~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~  191 (370)
                      |.||.+|. ..|..+|.+| +..+....               ....+..|.+|+++| |+.+||-|.            
T Consensus       486 g~lYfaD~-t~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~------------  552 (1899)
T KOG4659|consen  486 GNLYFADG-TRIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDT------------  552 (1899)
T ss_pred             CcEEEecc-cEEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeec------------
Confidence            99999984 5799999999 66664321               112456899999998 789999976            


Q ss_pred             ccccCCCceEEEEeCCCCeEEEEec---------------------CCCCccceEEccCCCEEEEEeCCc-----EEEEE
Q 017520          192 ILEGKPHGQLLKYDPSSNITTLVAD---------------------GFYFANGVALSRDEDYVVVCESWK-----CRKYW  245 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~~~~~~~~---------------------~~~~p~gi~~~~dg~~l~v~~~~~-----l~~~~  245 (370)
                             +-|+++++. ..+.+.+.                     .+-.+..|+++++|. ||++|+.+     |.++.
T Consensus       553 -------nvvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~-lyvaEsD~rriNrvr~~~  623 (1899)
T KOG4659|consen  553 -------NVVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGA-LYVAESDGRRINRVRKLS  623 (1899)
T ss_pred             -------ceEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCce-EEEEeccchhhhheEEec
Confidence                   356666654 34433321                     122356799999997 99999987     44444


Q ss_pred             eCCCCCCceeeecc-------------------------CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHH
Q 017520          246 LKGERKGKLETFAE-------------------------NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV  300 (370)
Q Consensus       246 ~~~~~~~~~~~~~~-------------------------~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  300 (370)
                      -+|.    ...+..                         ..-.-|..+|+.+||+++|++.++           --+|++
T Consensus       624 tdg~----i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN-----------~rIr~V  688 (1899)
T KOG4659|consen  624 TDGT----ISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGN-----------SRIRKV  688 (1899)
T ss_pred             cCce----EEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCc-----------hhhhhh
Confidence            3332    111110                         011247779999999999999775           235666


Q ss_pred             HHhCCc
Q 017520          301 LAAYPK  306 (370)
Q Consensus       301 ~~~~~~  306 (370)
                      .+..|.
T Consensus       689 s~~~~~  694 (1899)
T KOG4659|consen  689 SARMAK  694 (1899)
T ss_pred             hhcccc
Confidence            665554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.06  E-value=4.6e-07  Score=82.50  Aligned_cols=164  Identities=17%  Similarity=0.216  Sum_probs=102.4

Q ss_pred             CcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEEEeecCCccccc
Q 017520           90 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF  162 (370)
Q Consensus        90 G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~  162 (370)
                      +++|++. .+|.|..++  +++..........+. +++++++|. +|++... +.+..++ .++ ......  .+   ..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~---~~   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP--SG---PD   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--CC---CC
Confidence            3577665 688899999  565444334445678 999999997 6676544 4577777 555 322111  11   23


Q ss_pred             ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-
Q 017520          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-  240 (370)
Q Consensus       163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-  240 (370)
                      +..++++++|+ +|++..                 ..+.|..+|.++++..........+.++++++||+.++++...+ 
T Consensus        75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~  137 (300)
T TIGR03866        75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN  137 (300)
T ss_pred             ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCC
Confidence            55788999986 666643                 34689999987665433333334578999999999777776654 


Q ss_pred             -EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          241 -CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       241 -l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                       +..|+..+.+.  .....  ....|..+.++++|. +|++.
T Consensus       138 ~~~~~d~~~~~~--~~~~~--~~~~~~~~~~s~dg~~l~~~~  175 (300)
T TIGR03866       138 MAHFIDTKTYEI--VDNVL--VDQRPRFAEFTADGKELWVSS  175 (300)
T ss_pred             eEEEEeCCCCeE--EEEEE--cCCCccEEEECCCCCEEEEEc
Confidence             55667543211  11111  123467788999997 44554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.6e-07  Score=87.66  Aligned_cols=167  Identities=17%  Similarity=0.186  Sum_probs=102.9

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEecC-CeEEEEeCCe---------EEEEE----------------ecCCCceec
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRD-GWIKRLQDGT---------WVNWK----------------FIDSQTLVG  122 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~-g~I~~~~~g~---------~~~~~----------------~~~~~p~~g  122 (370)
                      ..+.++.| +..|..++..++|.+.+.... |.+..+.+|.         ...+.                .....++ +
T Consensus        58 ~~~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~  135 (399)
T COG2133          58 SVEVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-G  135 (399)
T ss_pred             eccccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-E
Confidence            34455666 889999999999955565544 7666665221         11111                1112345 5


Q ss_pred             eEEcCCCcEEEEeCCCceEEEc-CCC----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec-----c
Q 017520          123 LTSTKEGHLIICDNANGLHKVS-EDG----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD-----I  192 (370)
Q Consensus       123 l~~d~~G~L~v~~~~~gi~~~~-~~g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~-----~  192 (370)
                      +++. .+.+|+++. ..+.+++ .+.    .+.+....++...++-..|+++|||+||++..+...-....+..     +
T Consensus       136 ~a~~-~~~~~~~n~-~~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~  213 (399)
T COG2133         136 ISEP-GGGLYVANR-VAIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKV  213 (399)
T ss_pred             EEee-cCCceEEEE-EEEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccce
Confidence            6653 566777663 3566666 211    23344444544467788899999999999976531111111111     1


Q ss_pred             cccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      ++. ....++..|+.+...+++..++.+|.|++++|....||+++.+.
T Consensus       214 ~r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         214 LRI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             eee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            111 22345666777777788889999999999999855699999765

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=99.04  E-value=4.5e-08  Score=88.95  Aligned_cols=185  Identities=17%  Similarity=0.188  Sum_probs=114.1

Q ss_pred             ceEEcCCCcEEEEeCCC-------------ceEEEc-CCC--eEEEE-eecCCcccccccceEEcCC------CcEEEEe
Q 017520          122 GLTSTKEGHLIICDNAN-------------GLHKVS-EDG--VENFL-SYVNGSKLRFANDVVEASD------GSLYFTV  178 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~-------------gi~~~~-~~g--~~~~~-~~~~g~~~~~~~~l~~d~~------G~l~v~d  178 (370)
                      ++.+|+.|+|||.|.+.             .|+.+| .++  ++.+. +...-.+..+.+++++|..      +.+||+|
T Consensus         5 ~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD   84 (287)
T PF03022_consen    5 RVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITD   84 (287)
T ss_dssp             EEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEE
T ss_pred             EEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeC
Confidence            78889999999988642             478888 555  34332 1111113468899999862      5799999


Q ss_pred             CCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--------------------CccceEEcc---CCCEEEE
Q 017520          179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--------------------FANGVALSR---DEDYVVV  235 (370)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--------------------~p~gi~~~~---dg~~l~v  235 (370)
                      .+                 .++|.+||..+++...+.....                    ...|+++++   |+++||+
T Consensus        85 ~~-----------------~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf  147 (287)
T PF03022_consen   85 SG-----------------GPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYF  147 (287)
T ss_dssp             TT-----------------TCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEE
T ss_pred             CC-----------------cCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEE
Confidence            84                 3588999988877766543311                    135677765   8889999


Q ss_pred             EeCCc--EEEEEeC---CCCCCc-------eeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHh
Q 017520          236 CESWK--CRKYWLK---GERKGK-------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAA  303 (370)
Q Consensus       236 ~~~~~--l~~~~~~---~~~~~~-------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~  303 (370)
                      .-..+  ++++..+   .+....       ++.+. ..++..++++.|++|++|.+....                    
T Consensus       148 ~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG-~k~~~s~g~~~D~~G~ly~~~~~~--------------------  206 (287)
T PF03022_consen  148 HPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLG-DKGSQSDGMAIDPNGNLYFTDVEQ--------------------  206 (287)
T ss_dssp             EETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEE-E---SECEEEEETTTEEEEEECCC--------------------
T ss_pred             EeCCCCcEEEEEHHHhhCccccccccccccceecc-ccCCCCceEEECCCCcEEEecCCC--------------------
Confidence            98766  7777532   221111       12222 233456899999999999998775                    


Q ss_pred             CCccccccccCCCceEEEEECCCC-----cEEEEEeCCCCCccccceeEEEEC---CEEEEEeCC
Q 017520          304 YPKLFSQFITLGGGAHLIHVAEDG-----TIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLT  360 (370)
Q Consensus       304 ~~~~~~~~~~~~~~g~v~~~~~~g-----~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~  360 (370)
                                    ..|.+.++++     +....++++..  ..++.++...+   |+||+-+-.
T Consensus       207 --------------~aI~~w~~~~~~~~~~~~~l~~d~~~--l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  207 --------------NAIGCWDPDGPYTPENFEILAQDPRT--LQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             --------------TEEEEEETTTSB-GCCEEEEEE-CC---GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             --------------CeEEEEeCCCCcCccchheeEEcCce--eeccceeeeccccCceEEEEECc
Confidence                          4689999988     44445566552  34566666555   999998743

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.00  E-value=5.2e-08  Score=92.88  Aligned_cols=168  Identities=15%  Similarity=0.199  Sum_probs=109.8

Q ss_pred             ceEecCCCcCCCcceEEcCCCcEEEEec-CCeEEEEe--CCeEEEE------Ee--cCCCceeceEEcCC-------CcE
Q 017520           70 FIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNW------KF--IDSQTLVGLTSTKE-------GHL  131 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~l~v~~~-~g~I~~~~--~g~~~~~------~~--~~~~p~~gl~~d~~-------G~L  131 (370)
                      .+++.++ |..|.+|++.+||++||+.. .|+|++++  ++..+..      ..  ..+..+ ||+++|+       +.|
T Consensus        22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~l   99 (454)
T TIGR03606        22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEE
Confidence            4566666 89999999999999999997 59999998  3332221      11  234467 9999865       358


Q ss_pred             EEEeC----------CCceEEEc-C-C-C----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCC-ccceec-c
Q 017520          132 IICDN----------ANGLHKVS-E-D-G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP-HEYCLD-I  192 (370)
Q Consensus       132 ~v~~~----------~~gi~~~~-~-~-g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~-~~~~~~-~  192 (370)
                      |++-.          ...|.++. . + .    .+.+....+....++-..|++++||.|||+........ .+.+.. .
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~  179 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQ  179 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcch
Confidence            99731          23577765 2 2 1    23333333333345667899999999999865421100 000000 0


Q ss_pred             -------------cccCCCceEEEEeCCCC-----------eEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          193 -------------LEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       193 -------------~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                                   -.....|.|+|+|+++.           ..++++.++++|.|++++++|+ ||+++.+.
T Consensus       180 aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp  250 (454)
T TIGR03606       180 AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP  250 (454)
T ss_pred             hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence                         01134678999998843           2367788999999999999877 99998654

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.98  E-value=1.3e-07  Score=96.49  Aligned_cols=185  Identities=16%  Similarity=0.241  Sum_probs=123.8

Q ss_pred             cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecC-CC---ceeceEEcC-CCcEEEEeCC-CceEEEc---C-C
Q 017520           78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID-SQ---TLVGLTSTK-EGHLIICDNA-NGLHKVS---E-D  146 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~-~~---p~~gl~~d~-~G~L~v~~~~-~gi~~~~---~-~  146 (370)
                      +..|..++..+||.||||+.+ -|.|+. +|.+..+..-. .+   -+ -||++| ||.|||.+.. +.|+++.   + +
T Consensus       364 L~aPvala~a~DGSl~VGDfN-yIRRI~~dg~v~tIl~L~~t~~sh~Y-y~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d  441 (1899)
T KOG4659|consen  364 LFAPVALAYAPDGSLIVGDFN-YIRRISQDGQVSTILTLGLTDTSHSY-YIAVSPVDGTLYVSDPLSKQVWRVSSLEPQD  441 (1899)
T ss_pred             eeceeeEEEcCCCcEEEccch-heeeecCCCceEEEEEecCCCcccee-EEEecCcCceEEecCCCcceEEEeccCCccc
Confidence            557888999999999999976 499988 88877665433 22   24 588887 8999999877 5788886   1 1


Q ss_pred             --C-eEEEEeec----------------CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC
Q 017520          147 --G-VENFLSYV----------------NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (370)
Q Consensus       147 --g-~~~~~~~~----------------~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  207 (370)
                        + .++++..-                ....+.+|.++++|.+|.+||+|+.                   .|.++|..
T Consensus       442 ~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t-------------------~IR~iD~~  502 (1899)
T KOG4659|consen  442 SRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT-------------------RIRVIDTT  502 (1899)
T ss_pred             cccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc-------------------EEEEeccC
Confidence              1 45554210                1134678999999999999999874                   34445543


Q ss_pred             CCeEEEEec--------------------CCCCccceEEccCCCEEEEEeCCcEEEEEeCCCC---CCce-eeeccC---
Q 017520          208 SNITTLVAD--------------------GFYFANGVALSRDEDYVVVCESWKCRKYWLKGER---KGKL-ETFAEN---  260 (370)
Q Consensus       208 t~~~~~~~~--------------------~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~---~~~~-~~~~~~---  260 (370)
                       +.+..+..                    .+..|..++++|=.+.+||-+++-|++++.....   .|.. .+...+   
T Consensus       503 -giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~  581 (1899)
T KOG4659|consen  503 -GIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTNVVLRITVVHRVRIILGRPTHCDLANATS  581 (1899)
T ss_pred             -ceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecceEEEEccCccEEEEcCCccccccCCCch
Confidence             33333211                    2456889999996667999998667777654320   0100 000000   


Q ss_pred             ---------CCCCCCceeECCCCCEEEEEecCc
Q 017520          261 ---------LPGAPDNINLAPDGTFWIAIIKLD  284 (370)
Q Consensus       261 ---------~~g~p~~i~~d~~G~lwv~~~~~~  284 (370)
                               .--.+..|++..+|-+||+...++
T Consensus       582 ~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r  614 (1899)
T KOG4659|consen  582 SASKLADHRTLLIQRDIAVGTDGALYVAESDGR  614 (1899)
T ss_pred             hhhhhhhhhhhhhhhceeecCCceEEEEeccch
Confidence                     001467899999999999987763

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=1.2e-06  Score=83.22  Aligned_cols=184  Identities=16%  Similarity=0.172  Sum_probs=125.6

Q ss_pred             CCcceEEcCCC-cEEEEecC-CeEEEEe--CCeEEEEEecC-CCceeceEEcCCCc-EEEEeCC-CceEEEc-CCCeEEE
Q 017520           80 HPEDASMDKNG-VIYTATRD-GWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDGVENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~~~-g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g~~~~  151 (370)
                      .|..++++++| .+|+.... ..+..++  ....+.+...+ ..|. +++++++|+ +|+.+.. +.+..++ ..- +..
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~-~i~v~~~~~~vyv~~~~~~~v~vid~~~~-~~~  109 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPA-GVAVNPAGNKVYVTTGDSNTVSVIDTATN-TVL  109 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCcccc-ceeeCCCCCeEEEecCCCCeEEEEcCccc-cee
Confidence            89999999988 89998833 3455555  22333333333 6788 999998886 9998866 5677777 322 111


Q ss_pred             EeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      .....|   ..|..++++++| .+|+++...               .++.+.++|..++...........|.+++++++|
T Consensus       110 ~~~~vG---~~P~~~~~~~~~~~vYV~n~~~---------------~~~~vsvid~~t~~~~~~~~vG~~P~~~a~~p~g  171 (381)
T COG3391         110 GSIPVG---LGPVGLAVDPDGKYVYVANAGN---------------GNNTVSVIDAATNKVTATIPVGNTPTGVAVDPDG  171 (381)
T ss_pred             eEeeec---cCCceEEECCCCCEEEEEeccc---------------CCceEEEEeCCCCeEEEEEecCCCcceEEECCCC
Confidence            111122   278899999988 799998731               3578999999888776554444468999999999


Q ss_pred             CEEEEEeCCc--EEEEEeCCCCCCc-eeeeccCCCCCCCceeECCCCC-EEEEEecC
Q 017520          231 DYVVVCESWK--CRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~--l~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~  283 (370)
                      +.+|+++...  |..++.++..... .....-.....|.++.++++|+ +|+.....
T Consensus       172 ~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~  228 (381)
T COG3391         172 NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS  228 (381)
T ss_pred             CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccC
Confidence            9999999544  9999866542221 0000012334689999999997 88887553

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.94  E-value=4.8e-08  Score=92.41  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=98.4

Q ss_pred             EEEEEec--CCCceeceEEcCCCcEEEEeCC-------------CceEEEc-C--CC-e---EEEEeecCCcccccccce
Q 017520          109 WVNWKFI--DSQTLVGLTSTKEGHLIICDNA-------------NGLHKVS-E--DG-V---ENFLSYVNGSKLRFANDV  166 (370)
Q Consensus       109 ~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-------------~gi~~~~-~--~g-~---~~~~~~~~g~~~~~~~~l  166 (370)
                      ++.++..  ...|. +|++|++|+|||++..             ..|+++. .  +| .   +.++.   +  +..+++|
T Consensus         4 ~~l~A~~p~~~~P~-~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~---~--l~~p~Gi   77 (367)
T TIGR02604         4 VTLFAAEPLLRNPI-AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE---E--LSMVTGL   77 (367)
T ss_pred             EEEEECCCccCCCc-eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec---C--CCCccce
Confidence            4455543  56789 9999999999999741             2577776 3  45 2   33332   2  3578999


Q ss_pred             EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCCC-----CeEEEEecCC--------CCccceEEccCCCE
Q 017520          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSS-----NITTLVADGF--------YFANGVALSRDEDY  232 (370)
Q Consensus       167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~t-----~~~~~~~~~~--------~~p~gi~~~~dg~~  232 (370)
                      ++.++| |||++.                   ..|+++ |.+.     ++.+++.+++        ..++++++.+||+ 
T Consensus        78 ~~~~~G-lyV~~~-------------------~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-  136 (367)
T TIGR02604        78 AVAVGG-VYVATP-------------------PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-  136 (367)
T ss_pred             eEecCC-EEEeCC-------------------CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-
Confidence            999999 999954                   357777 3321     1344444332        3478999999997 


Q ss_pred             EEEEeCC--------------------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          233 VVVCESW--------------------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       233 l~v~~~~--------------------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||++...                    + |+||++++.   ..+.+... ...|.++++|++|++|++.+..
T Consensus       137 LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~---~~e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       137 LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGG---KLRVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             EEEecccCCCceeccCCCccCcccccCceEEEEecCCC---eEEEEecC-cCCCccceECCCCCEEEEccCC
Confidence            8986541                    3 889988764   34555433 2358899999999999997743

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.89  E-value=3.6e-06  Score=78.10  Aligned_cols=244  Identities=12%  Similarity=0.038  Sum_probs=130.8

Q ss_pred             CcEEEEecC-----CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC---------C-CceEEEc-CCC--e
Q 017520           90 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN---------A-NGLHKVS-EDG--V  148 (370)
Q Consensus        90 G~l~v~~~~-----g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~---------~-~gi~~~~-~~g--~  148 (370)
                      .++|+.+..     ++|+.+|  ++++......+.+|. ++ +++||+ ||++..         . ..|..+| .++  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            357777743     7899999  666665566778899 86 999984 999987         4 3466666 555  3


Q ss_pred             EEEEeecCC---cccccccceEEcCCCc-EEEEeCCCC-----CCC--ccce---------ecccccCCCceEEEEeCC-
Q 017520          149 ENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSSK-----YLP--HEYC---------LDILEGKPHGQLLKYDPS-  207 (370)
Q Consensus       149 ~~~~~~~~g---~~~~~~~~l~~d~~G~-l~v~d~~~~-----~~~--~~~~---------~~~~~~~~~g~l~~~d~~-  207 (370)
                      ..+... +.   .-...++.+++++||+ +||.+.+-.     .+.  +...         +.+...+....+.+.|.. 
T Consensus        91 ~~i~~p-~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~  169 (352)
T TIGR02658        91 ADIELP-EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL  169 (352)
T ss_pred             eEEccC-CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence            333211 11   0134667899999995 898864300     000  0000         000011111112222211 


Q ss_pred             -------CCeEEE----EecC-----CCCccceEEcc-CCCEEEEEeCCcEEEEEeCCCCCCceeee---ccC--CCC-C
Q 017520          208 -------SNITTL----VADG-----FYFANGVALSR-DEDYVVVCESWKCRKYWLKGERKGKLETF---AEN--LPG-A  264 (370)
Q Consensus       208 -------t~~~~~----~~~~-----~~~p~gi~~~~-dg~~l~v~~~~~l~~~~~~~~~~~~~~~~---~~~--~~g-~  264 (370)
                             +++...    ++..     +..|   .+.+ ||+.+|++..+.|+.+|+.+........+   ...  ..+ .
T Consensus       170 ~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wr  246 (352)
T TIGR02658       170 AKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWR  246 (352)
T ss_pred             EEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccC
Confidence                   111110    1111     0122   3344 88988898885599999765432222221   111  001 3


Q ss_pred             CCc---eeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC
Q 017520          265 PDN---INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ  339 (370)
Q Consensus       265 p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~  339 (370)
                      |.+   ++++++| ++||...++.-                    ..+     ..+...|..+|. .++++..+..  |.
T Consensus       247 P~g~q~ia~~~dg~~lyV~~~~~~~--------------------~th-----k~~~~~V~ViD~~t~kvi~~i~v--G~  299 (352)
T TIGR02658       247 PGGWQQVAYHRARDRIYLLADQRAK--------------------WTH-----KTASRFLFVVDAKTGKRLRKIEL--GH  299 (352)
T ss_pred             CCcceeEEEcCCCCEEEEEecCCcc--------------------ccc-----cCCCCEEEEEECCCCeEEEEEeC--CC
Confidence            555   8999887 69997765410                    000     112235777885 5677776654  32


Q ss_pred             ccccceeEEE-E-CC-EEEEEeCCCCeEEEEeC
Q 017520          340 LMSFVTSGLQ-V-DN-HLYVISLTSNFIGKVQL  369 (370)
Q Consensus       340 ~~~~~t~~~~-~-~g-~L~~gs~~~~~i~~~~~  369 (370)
                         .+..+.. . +. .||..+-.++.|.+++.
T Consensus       300 ---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       300 ---EIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             ---ceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence               2333332 2 35 68888877888888874

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.2e-06  Score=83.28  Aligned_cols=177  Identities=17%  Similarity=0.185  Sum_probs=123.5

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC-cEEEEeCC---CceEEEcC-CC-e
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---NGLHKVSE-DG-V  148 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~---~gi~~~~~-~g-~  148 (370)
                      ..|.++++.++|. +|+.+ ..+.|..++  ..+.......+..|. +++++++| .+||++..   .-+..++. ++ .
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            6799999998775 99988 447899998  334444444455899 99999988 79999983   45777774 34 2


Q ss_pred             EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-----EecCCCCcc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFAN  222 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-----~~~~~~~p~  222 (370)
                      ...  ...|.   .|.+++++++|+ +|+++.                 .++.|..+|.++..+..     .......|.
T Consensus       153 ~~~--~~vG~---~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~  210 (381)
T COG3391         153 TAT--IPVGN---TPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA  210 (381)
T ss_pred             EEE--EecCC---CcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCc
Confidence            222  22232   457899999996 999984                 45789999987665553     133456899


Q ss_pred             ceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          223 GVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      +++++++|+.+|+++..+    +.+++............. ... .|.++..+++|..+...
T Consensus       211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~  270 (381)
T COG3391         211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVA  270 (381)
T ss_pred             eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEE
Confidence            999999999999999874    777776543211111111 122 58899999999755444

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.76  E-value=8.2e-06  Score=79.67  Aligned_cols=186  Identities=16%  Similarity=0.206  Sum_probs=126.9

Q ss_pred             CCcCCCcceEEcCCCcEEE-EecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CCC--
Q 017520           76 GSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG--  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v-~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~g--  147 (370)
                      |.+..-.++++.+||.+.+ |..||+|..||  .| =+.+|........ ++.+...|+..++..-.|-++ +| ...  
T Consensus       348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~llssSLDGtVRAwDlkRYrN  426 (893)
T KOG0291|consen  348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNVLLSSSLDGTVRAWDLKRYRN  426 (893)
T ss_pred             ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCEEEEeecCCeEEeeeecccce
Confidence            4455667888999997664 55899999999  33 3667766666677 999999999888766656444 55 333  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~  226 (370)
                      ++.+..+.   + .....+++|+.|.|.++-..                ..-.|+.++.+||+..-+..+.-.| .++++
T Consensus       427 fRTft~P~---p-~QfscvavD~sGelV~AG~~----------------d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f  486 (893)
T KOG0291|consen  427 FRTFTSPE---P-IQFSCVAVDPSGELVCAGAQ----------------DSFEIFVWSVQTGQLLDILSGHEGPVSGLSF  486 (893)
T ss_pred             eeeecCCC---c-eeeeEEEEcCCCCEEEeecc----------------ceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence            66664321   1 24567899999998887442                2346899999999887666666666 57899


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCch
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDA  285 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~  285 (370)
                      +++++.|+-+.... |.+|++=+. .++.+.+.  .....-++.+.++| .+-|++..+..
T Consensus       487 ~~~~~~LaS~SWDkTVRiW~if~s-~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqI  544 (893)
T KOG0291|consen  487 SPDGSLLASGSWDKTVRIWDIFSS-SGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQI  544 (893)
T ss_pred             ccccCeEEeccccceEEEEEeecc-CceeeeEe--eccceeEEEEcCCCCeEEEEEecceE
Confidence            99999666656556 887776432 23344432  11123456778888 58888887643

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.72  E-value=2.4e-05  Score=69.49  Aligned_cols=174  Identities=17%  Similarity=0.213  Sum_probs=112.1

Q ss_pred             cceEEcCCC-cEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeC-CCceEEEc-CCC--eEEEEe
Q 017520           82 EDASMDKNG-VIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVS-EDG--VENFLS  153 (370)
Q Consensus        82 ~~i~~d~~G-~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~-~~gi~~~~-~~g--~~~~~~  153 (370)
                      ..+.+.+++ .+++++.+|.|..++  ++ ....+......+. ++.+.+++.++++.. .+.+..++ .++  ...+. 
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-  132 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-  132 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-
Confidence            367777777 677777899999999  33 3444443444566 899998888877766 45567777 444  22221 


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~  232 (370)
                         . ....+..+.+++++.++++..                 .++.|..||..+++...... .......++++++++.
T Consensus       133 ---~-~~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~  191 (289)
T cd00200         133 ---G-HTDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEK  191 (289)
T ss_pred             ---c-CCCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcCE
Confidence               1 113577889999887766643                 24678888887554432222 2235678999999987


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ++++...+ |..|++...+.  ...+. ........+.+++++.++++..
T Consensus       192 l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~~~~~~  238 (289)
T cd00200         192 LLSSSSDGTIKLWDLSTGKC--LGTLR-GHENGVNSVAFSPDGYLLASGS  238 (289)
T ss_pred             EEEecCCCcEEEEECCCCce--ecchh-hcCCceEEEEEcCCCcEEEEEc
Confidence            88888766 89998764311  11221 1223456688888887777765

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.71  E-value=2.7e-06  Score=77.77  Aligned_cols=206  Identities=22%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             eEecCCCcCCCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC
Q 017520           71 IKVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG  147 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g  147 (370)
                      ..++...+.+||.+.+|+.| --|++-.+|++.+|.  +..+..+......++.+.+-++   .+               
T Consensus        46 ~l~~~~~~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~---~~---------------  107 (376)
T KOG1520|consen   46 KLIPNNHLTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGWVKFADTKDSTNRSQCCDP---GS---------------  107 (376)
T ss_pred             ccccccccCChhhheecccCCCceEEEECCceEEEeccCceEEEEEeccccccccccCCC---cc---------------
Confidence            34555557899999999855 578888889998887  2333333322111110000000   00               


Q ss_pred             eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CCCCc
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFA  221 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~p  221 (370)
                      .+  ....-|    .|-+|+++..| ++||+|.-                  -+|+.++++++..+.+.+     .+.+.
T Consensus       108 ~~--~e~~CG----RPLGl~f~~~ggdL~VaDAY------------------lGL~~V~p~g~~a~~l~~~~~G~~~kf~  163 (376)
T KOG1520|consen  108 FE--TEPLCG----RPLGIRFDKKGGDLYVADAY------------------LGLLKVGPEGGLAELLADEAEGKPFKFL  163 (376)
T ss_pred             ee--cccccC----CcceEEeccCCCeEEEEecc------------------eeeEEECCCCCcceeccccccCeeeeec
Confidence            11  011233    34578999877 99999863                  479999999887665543     35678


Q ss_pred             cceEEccCCCEEEEEeCCc-------------------EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          222 NGVALSRDEDYVVVCESWK-------------------CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-------------------l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      |++.++++|. +|++++..                   +++||..+   ...+++.+++. +|+|++.++|+.+.+.+..
T Consensus       164 N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~t---K~~~VLld~L~-F~NGlaLS~d~sfvl~~Et  238 (376)
T KOG1520|consen  164 NDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPST---KVTKVLLDGLY-FPNGLALSPDGSFVLVAET  238 (376)
T ss_pred             CceeEcCCCe-EEEeccccccchhheEEeeecCCCccceEEecCcc---cchhhhhhccc-ccccccCCCCCCEEEEEee
Confidence            9999999665 99988533                   44555332   23444554443 6999999999987777655


Q ss_pred             CchhHHHhhhcchhH--HHHHHh-CCccccccccCCCceEEEEECCCCcEEEEE
Q 017520          283 LDARRMKILNSSKLI--KHVLAA-YPKLFSQFITLGGGAHLIHVAEDGTIIRNL  333 (370)
Q Consensus       283 ~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~  333 (370)
                      ....+..+..+.|..  ..+.+. ||..-..          ++.+.+|+...-.
T Consensus       239 ~~~ri~rywi~g~k~gt~EvFa~~LPG~PDN----------IR~~~~G~fWVal  282 (376)
T KOG1520|consen  239 TTARIKRYWIKGPKAGTSEVFAEGLPGYPDN----------IRRDSTGHFWVAL  282 (376)
T ss_pred             ccceeeeeEecCCccCchhhHhhcCCCCCcc----------eeECCCCCEEEEE
Confidence            433333443333333  233333 6665544          5666666554433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.70  E-value=5.8e-05  Score=71.74  Aligned_cols=139  Identities=16%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcc
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSK  159 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~  159 (370)
                      .+++ ++.+|+++.+|.|+.++  +|+...-....+....+.+++ ++.+|+++..+.++.++ .+| ...-.. ..+..
T Consensus        61 p~v~-~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~-~~~~~  137 (377)
T TIGR03300        61 PAVA-GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGAD-GGLVFVGTEKGEVIALDAEDGKELWRAK-LSSEV  137 (377)
T ss_pred             eEEE-CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEc-CCEEEEEcCCCEEEEEECCCCcEeeeec-cCcee
Confidence            3554 67999999999999999  787543333222222145554 67899988777799999 678 433222 12211


Q ss_pred             cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC------ccceEEccCCCEE
Q 017520          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF------ANGVALSRDEDYV  233 (370)
Q Consensus       160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~------p~gi~~~~dg~~l  233 (370)
                      ..   ..++ .++.+|+...                  .+.|+.+|.++++..........      .....+. + +.+
T Consensus       138 ~~---~p~v-~~~~v~v~~~------------------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v  193 (377)
T TIGR03300       138 LS---PPLV-ANGLVVVRTN------------------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGV  193 (377)
T ss_pred             ec---CCEE-ECCEEEEECC------------------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEE
Confidence            11   1122 2567877643                  47899999887765332211110      0111222 3 347


Q ss_pred             EEEeCCc-EEEEEeCCC
Q 017520          234 VVCESWK-CRKYWLKGE  249 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~  249 (370)
                      |+....+ ++.+|+..+
T Consensus       194 ~~~~~~g~v~ald~~tG  210 (377)
T TIGR03300       194 LVGFAGGKLVALDLQTG  210 (377)
T ss_pred             EEECCCCEEEEEEccCC
Confidence            7766655 888887543

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.62  E-value=1.6e-05  Score=70.28  Aligned_cols=190  Identities=12%  Similarity=0.154  Sum_probs=101.1

Q ss_pred             CCcCCCcceEEcCC-CcEEEEe-cCCeEEEEe-CCeEE-EEEec-CCCceeceEEcCCCcEEEEeCC-CceEEEc--CCC
Q 017520           76 GSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ-DGTWV-NWKFI-DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~-G~l~v~~-~~g~I~~~~-~g~~~-~~~~~-~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~--~~g  147 (370)
                      |....+.+|+++++ +.||+.+ ..+.|+.++ +|++. .+... .+.+- ||++-.+|.+.+.+.. +.++.++  .++
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            44557899999975 6799655 788999999 88754 33222 35677 9999877877777754 4576666  222


Q ss_pred             --e--E---EEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEe--
Q 017520          148 --V--E---NFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVA--  215 (370)
Q Consensus       148 --~--~---~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~--  215 (370)
                        +  .   .+.-...........+|+.|+. +++|++...                ....|+.++.  .........  
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~----------------~P~~l~~~~~~~~~~~~~~~~~~  161 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER----------------KPKRLYEVNGFPGGFDLFVSDDQ  161 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES----------------SSEEEEEEESTT-SS--EEEE-H
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC----------------CChhhEEEccccCccceeecccc
Confidence              1  1   1111112122235678999987 478887432                2245777764  212222211  


Q ss_pred             ------cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCC------CCCCCceeECCCCCEEEEEe
Q 017520          216 ------DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       216 ------~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~------~g~p~~i~~d~~G~lwv~~~  281 (370)
                            .....+.++++++..+.+|+-....  |..+|.+|...+.. .+....      -..|.||++|++|++||..-
T Consensus       162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~-~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE  240 (248)
T PF06977_consen  162 DLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSL-SLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE  240 (248)
T ss_dssp             HHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEE-E-STTGGG-SS---SEEEEEE-TT--EEEEET
T ss_pred             ccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEE-EeCCcccCcccccCCccEEEECCCCCEEEEcC
Confidence                  1234578999999877788776655  88999766422111 111110      12489999999999999986


Q ss_pred             cC
Q 017520          282 KL  283 (370)
Q Consensus       282 ~~  283 (370)
                      .+
T Consensus       241 pN  242 (248)
T PF06977_consen  241 PN  242 (248)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.60  E-value=4.8e-06  Score=81.94  Aligned_cols=166  Identities=16%  Similarity=0.173  Sum_probs=111.6

Q ss_pred             cEEEEecCCeEEEEe-CCe------EEEEEe-cCCCceeceEEc-CCCcEEEEeCCC-ceEEEcCCC--eEEEEeecCCc
Q 017520           91 VIYTATRDGWIKRLQ-DGT------WVNWKF-IDSQTLVGLTST-KEGHLIICDNAN-GLHKVSEDG--VENFLSYVNGS  158 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~g~------~~~~~~-~~~~p~~gl~~d-~~G~L~v~~~~~-gi~~~~~~g--~~~~~~~~~g~  158 (370)
                      .|.++ ..++|.++. +|.      .+.+.. +..-+. ||.|| .+..+|+.|..+ .|-+-.-.|  -+.+++    .
T Consensus       992 ~LL~a-qg~~I~~lplng~~~~K~~ak~~l~~p~~IiV-GidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n----~ 1065 (1289)
T KOG1214|consen  992 FLLYA-QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIV-GIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVN----S 1065 (1289)
T ss_pred             eEEEe-ccceEEEeecCcchhchhhhhceEecccceee-eeecccccceEEEeecCCCccccccccCCCCceeec----c
Confidence            34444 456788877 442      222232 334466 99999 455789888653 455555334  444433    2


Q ss_pred             ccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520          159 KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       159 ~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      .+.+|.+|++|.-+ ++|.+|+.-               ..-.+..+|... +...+.+++.+|.+|++|+-+..|||++
T Consensus      1066 ~L~SPEGiAVDh~~Rn~ywtDS~l---------------D~IevA~LdG~~-rkvLf~tdLVNPR~iv~D~~rgnLYwtD 1129 (1289)
T KOG1214|consen 1066 GLISPEGIAVDHIRRNMYWTDSVL---------------DKIEVALLDGSE-RKVLFYTDLVNPRAIVVDPIRGNLYWTD 1129 (1289)
T ss_pred             cCCCccceeeeeccceeeeecccc---------------chhheeecCCce-eeEEEeecccCcceEEeecccCceeecc
Confidence            24689999999866 799998741               122455666542 2233457899999999999888899999


Q ss_pred             CCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC--EEEEEe
Q 017520          238 SWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIAII  281 (370)
Q Consensus       238 ~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwv~~~  281 (370)
                      .++    |-+.+++|.   +.++++...-++|+|+.+|+.-.  -||-..
T Consensus      1130 WnRenPkIets~mDG~---NrRilin~DigLPNGLtfdpfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1130 WNRENPKIETSSMDGE---NRRILINTDIGLPNGLTFDPFSKLLCWVDAG 1176 (1289)
T ss_pred             ccccCCcceeeccCCc---cceEEeecccCCCCCceeCcccceeeEEecC
Confidence            987    889999885   56677766678999999999775  455543

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.58  E-value=0.00016  Score=64.13  Aligned_cols=178  Identities=17%  Similarity=0.224  Sum_probs=107.4

Q ss_pred             CCcceEEcCCC-cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC--eEEE
Q 017520           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g--~~~~  151 (370)
                      ...++.++++| .+++++.+|.|..++  +++. ........... .+.+.++++ ++++...+.+..++ .++  ...+
T Consensus        11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~   89 (289)
T cd00200          11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVR-DVAASADGTYLASGSSDKTIRLWDLETGECVRTL   89 (289)
T ss_pred             CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCccee-EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEE
Confidence            45677888875 455666789999988  4432 22222333344 788888885 55555445566666 443  3333


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg  230 (370)
                      ...     ...+..+.+.++++++++..                 .++.+..||..+++...... .......+++++++
T Consensus        90 ~~~-----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  147 (289)
T cd00200          90 TGH-----TSYVSSVAFSPDGRILSSSS-----------------RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG  147 (289)
T ss_pred             ecc-----CCcEEEEEEcCCCCEEEEec-----------------CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcC
Confidence            211     12567788888888777753                 24788999987555443333 22346788999998


Q ss_pred             CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520          231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~  283 (370)
                      +.++.+...+ |..|++...+.  ...+. ........+.++++| .++++...+
T Consensus       148 ~~l~~~~~~~~i~i~d~~~~~~--~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~  199 (289)
T cd00200         148 TFVASSSQDGTIKLWDLRTGKC--VATLT-GHTGEVNSVAFSPDGEKLLSSSSDG  199 (289)
T ss_pred             CEEEEEcCCCcEEEEEcccccc--ceeEe-cCccccceEEECCCcCEEEEecCCC
Confidence            8666655355 99999764321  12221 222345678888888 466655443

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.57  E-value=7e-06  Score=77.47  Aligned_cols=152  Identities=14%  Similarity=0.166  Sum_probs=93.3

Q ss_pred             CcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eEEEE
Q 017520           81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFL  152 (370)
Q Consensus        81 P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~~~~  152 (370)
                      +..+++.+|| ++|+.+.+|.|.++|  +++...-...+..|. ++++++||+ +|+++.. ..+..+| ++.  ++.+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            3456778887 599999999999999  666555556677899 999999997 6777654 5677788 554  44432


Q ss_pred             ee-cCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEEEecCCCCccceEEcc
Q 017520          153 SY-VNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSR  228 (370)
Q Consensus       153 ~~-~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~p~gi~~~~  228 (370)
                      .. ... .+...+.++..++....|+..-                ...+.++.+|.....  .........+|....+++
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEeccccccceeeecccccccccccCc
Confidence            21 111 1222345666677777666532                145789988865332  222334456889999999


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCC
Q 017520          229 DEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      +++.++++....  |..+|.+..
T Consensus       182 dgry~~va~~~sn~i~viD~~~~  204 (369)
T PF02239_consen  182 DGRYFLVAANGSNKIAVIDTKTG  204 (369)
T ss_dssp             TSSEEEEEEGGGTEEEEEETTTT
T ss_pred             ccceeeecccccceeEEEeeccc
Confidence            999888876655  888886543

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.54  E-value=7.3e-05  Score=70.61  Aligned_cols=167  Identities=14%  Similarity=0.161  Sum_probs=96.3

Q ss_pred             cEE-EEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC--eEEEEeecCCccccc
Q 017520           91 VIY-TAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF  162 (370)
Q Consensus        91 ~l~-v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~  162 (370)
                      +|+ +.. .+|.|..+|  +.+........+.++.++++++||+ +|+++..+.+..+| .++  +..+.   .|   ..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~   79 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GN   79 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CC
Confidence            444 555 678899999  4554443444455542688899996 89988666788888 555  33332   23   35


Q ss_pred             ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--------CCccceEEccCCCEE
Q 017520          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------YFANGVALSRDEDYV  233 (370)
Q Consensus       163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--------~~p~gi~~~~dg~~l  233 (370)
                      +.++++++||+ +|+++.                 ..+.+..+|.++.+........        ....+|..++.+..+
T Consensus        80 ~~~i~~s~DG~~~~v~n~-----------------~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANY-----------------EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             EEEEEE--TTTEEEEEEE-----------------ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             cceEEEcCCCCEEEEEec-----------------CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence            78899999996 666753                 3468889998776543322111        123467777888766


Q ss_pred             EEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          234 VVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       234 ~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      +++....  |+.+|....+.-.. ... ....+|.+..+|++|+++++...
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~-~~i-~~g~~~~D~~~dpdgry~~va~~  191 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKV-TTI-KVGRFPHDGGFDPDGRYFLVAAN  191 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEE-EEE-E--TTEEEEEE-TTSSEEEEEEG
T ss_pred             EEEEccCCeEEEEEeccccccce-eee-cccccccccccCcccceeeeccc
Confidence            6665443  99888765422111 122 23346889999999987766543

...

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.53  E-value=9.2e-05  Score=72.02  Aligned_cols=199  Identities=13%  Similarity=0.115  Sum_probs=117.7

Q ss_pred             ceEEcCCCc-EE-EEecC--CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IY-TATRD--GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~-v~~~~--g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~~  150 (370)
                      +..+++||. |+ +...+  ..|+.++  +|+.+.+....+... ..++++||+ |+++....   .|+.++ .++ .+.
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~  300 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR  300 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE
Confidence            357788885 43 33333  3688888  566555543333334 678999997 65543222   488888 555 554


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      +... .    ......++++||+ |+++...               .....||++|.++++.+.+........+.++++|
T Consensus       301 lt~~-~----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD  360 (448)
T PRK04792        301 ITRH-R----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD  360 (448)
T ss_pred             CccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence            4321 1    1234568889985 6665321               1235799999988877665433233445789999


Q ss_pred             CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520          230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY  304 (370)
Q Consensus       230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (370)
                      |+.++++...+    |+++++++..   ...+...  .......+++||+ ++.+...+                     
T Consensus       361 G~~l~~~~~~~g~~~I~~~dl~~g~---~~~lt~~--~~d~~ps~spdG~~I~~~~~~~---------------------  414 (448)
T PRK04792        361 GRSMIMVNRTNGKFNIARQDLETGA---MQVLTST--RLDESPSVAPNGTMVIYSTTYQ---------------------  414 (448)
T ss_pred             CCEEEEEEecCCceEEEEEECCCCC---eEEccCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence            99988876533    8888877642   2222211  1122346788886 44443322                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                 ....++.++.+|+..+.+..+.|.
T Consensus       415 -----------g~~~l~~~~~~G~~~~~l~~~~g~  438 (448)
T PRK04792        415 -----------GKQVLAAVSIDGRFKARLPAGQGE  438 (448)
T ss_pred             -----------CceEEEEEECCCCceEECcCCCCC
Confidence                       123467778888888877655443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.52  E-value=6.3e-05  Score=72.02  Aligned_cols=122  Identities=15%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CC-CCCCceeECCCC
Q 017520          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LP-GAPDNINLAPDG  274 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~-g~p~~i~~d~~G  274 (370)
                      .+.++.+|..+++.... ..+..+..+++  +++.+|+....+ ++.++.++.+    ..+... .. .......+ .+|
T Consensus       265 ~g~l~ald~~tG~~~W~-~~~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v-~~g  336 (394)
T PRK11138        265 NGNLVALDLRSGQIVWK-REYGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVL-YNG  336 (394)
T ss_pred             CCeEEEEECCCCCEEEe-ecCCCccCcEE--ECCEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEE-ECC
Confidence            47899999988865321 22222333333  345688888777 9999976542    122111 11 01111222 368


Q ss_pred             CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCE
Q 017520          275 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNH  353 (370)
Q Consensus       275 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~  353 (370)
                      .+|+++..+                                   .++.+|. +|+++..+....+.   ..+.-...+++
T Consensus       337 ~l~v~~~~G-----------------------------------~l~~ld~~tG~~~~~~~~~~~~---~~s~P~~~~~~  378 (394)
T PRK11138        337 YLVVGDSEG-----------------------------------YLHWINREDGRFVAQQKVDSSG---FLSEPVVADDK  378 (394)
T ss_pred             EEEEEeCCC-----------------------------------EEEEEECCCCCEEEEEEcCCCc---ceeCCEEECCE
Confidence            899987664                                   5788885 79999988654322   22333446889


Q ss_pred             EEEEeCCCCeEE
Q 017520          354 LYVISLTSNFIG  365 (370)
Q Consensus       354 L~~gs~~~~~i~  365 (370)
                      ||+++.++.-++
T Consensus       379 l~v~t~~G~l~~  390 (394)
T PRK11138        379 LLIQARDGTVYA  390 (394)
T ss_pred             EEEEeCCceEEE
Confidence            999999876443

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.52  E-value=4.1e-06  Score=82.41  Aligned_cols=179  Identities=15%  Similarity=0.139  Sum_probs=119.5

Q ss_pred             CCcceEEc-CCCcEEEEe-cCCeEEEEe-CC-eEEEEE-ecCCCceeceEEcCCC-cEEEEeCC-CceEEEcCCC--eEE
Q 017520           80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DG-TWVNWK-FIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVSEDG--VEN  150 (370)
Q Consensus        80 ~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g-~~~~~~-~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~~~g--~~~  150 (370)
                      -|-+|.+| .+..+|.++ ....|.+-. +| +.+.+. .....|- ||++|.-+ ++|.+|.. ..|-...-+|  .++
T Consensus      1026 IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkv 1104 (1289)
T KOG1214|consen 1026 IIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERKV 1104 (1289)
T ss_pred             eeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceeeE
Confidence            35667777 466788888 444566655 44 555554 4557789 99999766 69998865 2222222355  444


Q ss_pred             EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~  228 (370)
                      ++..  +  +-.|.+|++|+ .|+||.+|..               +.+-.|-+.+.+++..+++ .+++.-|||+.|++
T Consensus      1105 Lf~t--d--LVNPR~iv~D~~rgnLYwtDWn---------------RenPkIets~mDG~NrRilin~DigLPNGLtfdp 1165 (1289)
T KOG1214|consen 1105 LFYT--D--LVNPRAIVVDPIRGNLYWTDWN---------------RENPKIETSSMDGENRRILINTDIGLPNGLTFDP 1165 (1289)
T ss_pred             EEee--c--ccCcceEEeecccCceeecccc---------------ccCCcceeeccCCccceEEeecccCCCCCceeCc
Confidence            4332  2  34678899998 6799999875               2334566666765555554 46788999999999


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          229 DEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ..+.|-|.+.+.  +.....++.  +.+.. ..++ .+|-+|.-+.+. +|.+++..
T Consensus      1166 fs~~LCWvDAGt~rleC~~p~g~--gRR~i-~~~L-qYPF~itsy~~~-fY~TDWk~ 1217 (1289)
T KOG1214|consen 1166 FSKLLCWVDAGTKRLECTLPDGT--GRRVI-QNNL-QYPFSITSYADH-FYHTDWKR 1217 (1289)
T ss_pred             ccceeeEEecCCcceeEecCCCC--cchhh-hhcc-cCceeeeecccc-ceeecccc
Confidence            999999999876  777766653  33332 2233 378888887765 88888764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.51  E-value=0.0001  Score=71.45  Aligned_cols=199  Identities=15%  Similarity=0.164  Sum_probs=118.5

Q ss_pred             ceEEcCCCc-EEEEe---cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEE-eCC--CceEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIIC-DNA--NGLHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~---~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~-~~~--~gi~~~~-~~g-~~~  150 (370)
                      +.++++||+ |++.+   ....|+.++  +|+.+.+....+... .+++++||+ |+++ +..  ..|+.++ .+| .+.
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~  286 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR  286 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence            346677875 55444   234699888  566555544334444 678999996 5444 322  2488888 556 554


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      +... .    ......++++||+ |+++...               .....||.+|.++++.+.+..........++++|
T Consensus       287 lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpD  346 (433)
T PRK04922        287 LTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVSPD  346 (433)
T ss_pred             CccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            4321 1    1223568899996 6555321               1224699999877776655433233446899999


Q ss_pred             CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520          230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY  304 (370)
Q Consensus       230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (370)
                      |+.++++...+    |+.+++++..   ...+...  .......+++||+ ++.+....                     
T Consensus       347 G~~Ia~~~~~~~~~~I~v~d~~~g~---~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~---------------------  400 (433)
T PRK04922        347 GKKIAMVHGSGGQYRIAVMDLSTGS---VRTLTPG--SLDESPSFAPNGSMVLYATREG---------------------  400 (433)
T ss_pred             CCEEEEEECCCCceeEEEEECCCCC---eEECCCC--CCCCCceECCCCCEEEEEEecC---------------------
Confidence            99888865432    8888876542   2233211  1234567889997 33333221                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                 ..+.++.++.+|+..+.+....|.
T Consensus       401 -----------g~~~L~~~~~~g~~~~~l~~~~g~  424 (433)
T PRK04922        401 -----------GRGVLAAVSTDGRVRQRLVSADGE  424 (433)
T ss_pred             -----------CceEEEEEECCCCceEEcccCCCC
Confidence                       124688888888877777654443

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=0.00049  Score=61.07  Aligned_cols=229  Identities=13%  Similarity=0.117  Sum_probs=137.7

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecC-CCceeceEEc-CCCcEEEEeCC--CceEEEc--CCC-e
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFID-SQTLVGLTST-KEGHLIICDNA--NGLHKVS--EDG-V  148 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d-~~G~L~v~~~~--~gi~~~~--~~g-~  148 (370)
                      ..+++|.++.+|...+++ .+..|..++  +|+........ -.+. -+.|. .+..+.-+...  .-|..++  .+. +
T Consensus        15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~-~~~Fth~~~~~i~sStk~d~tIryLsl~dNkyl   93 (311)
T KOG1446|consen   15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVD-LACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYL   93 (311)
T ss_pred             CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeeccccccc-EEEEecCCceEEEccCCCCCceEEEEeecCceE
Confidence            468999999999877764 666788888  77654433322 1233 34444 33344444331  2355555  344 6


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      +.+    .|.. ..++.|.+.|-+..+++.+                 .+..|..||....+.+.+.. +..+.-.|+||
T Consensus        94 RYF----~GH~-~~V~sL~~sP~~d~FlS~S-----------------~D~tvrLWDlR~~~cqg~l~-~~~~pi~AfDp  150 (311)
T KOG1446|consen   94 RYF----PGHK-KRVNSLSVSPKDDTFLSSS-----------------LDKTVRLWDLRVKKCQGLLN-LSGRPIAAFDP  150 (311)
T ss_pred             EEc----CCCC-ceEEEEEecCCCCeEEecc-----------------cCCeEEeeEecCCCCceEEe-cCCCcceeECC
Confidence            655    3322 4688999999889999865                 34678888887666655443 34556789999


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHh
Q 017520          229 DEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAA  303 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~  303 (370)
                      +|- ++....++  |..||+..-..+-+..|.-+  ....-.+|.+++||. +.+++..+                    
T Consensus       151 ~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s--------------------  209 (311)
T KOG1446|consen  151 EGL-IFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS--------------------  209 (311)
T ss_pred             CCc-EEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC--------------------
Confidence            997 44444443  88899864333334444211  111235688999996 66776654                    


Q ss_pred             CCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEEe
Q 017520          304 YPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       304 ~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~  368 (370)
                                     .++.+| -+|.++.+|....+...-. -.+.. -+++..+++-....|.+.+
T Consensus       210 ---------------~~~~lDAf~G~~~~tfs~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  210 ---------------FIYLLDAFDGTVKSTFSGYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             ---------------cEEEEEccCCcEeeeEeeccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEE
Confidence                           467777 4899888886654331111 23333 3556666666655555544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.48  E-value=1.1e-05  Score=73.32  Aligned_cols=182  Identities=18%  Similarity=0.272  Sum_probs=106.1

Q ss_pred             cceEEcCCCcEEEEecC-------------CeEEEEe--CCe-EEEEEec------CCCceeceEEcC-C-----CcEEE
Q 017520           82 EDASMDKNGVIYTATRD-------------GWIKRLQ--DGT-WVNWKFI------DSQTLVGLTSTK-E-----GHLII  133 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~-------------g~I~~~~--~g~-~~~~~~~------~~~p~~gl~~d~-~-----G~L~v  133 (370)
                      -.+.+|+.|+||+-|..             -+|..||  +++ ++++..+      ..... .+++|. +     +.+||
T Consensus         4 ~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~ln-dl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    4 QRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLN-DLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEE-EEEEECTTTTS-SEEEEE
T ss_pred             cEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccc-eEEEEccCCCCcceEEEE
Confidence            46889999999998721             2799999  554 3444322      12234 678874 2     46999


Q ss_pred             EeCC-CceEEEc-CCC--eEEEEeec-----------CCcccc---cccceEEcC---CC-cEEEEeCCCCCCCccceec
Q 017520          134 CDNA-NGLHKVS-EDG--VENFLSYV-----------NGSKLR---FANDVVEAS---DG-SLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       134 ~~~~-~gi~~~~-~~g--~~~~~~~~-----------~g~~~~---~~~~l~~d~---~G-~l~v~d~~~~~~~~~~~~~  191 (370)
                      +|.. .||+.++ .+|  .+.+....           .|..+.   .+.+++.++   +| .||+.--+           
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-----------  151 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-----------  151 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-----------
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-----------
Confidence            9987 6899999 777  44442211           111111   234455544   44 47777532           


Q ss_pred             ccccCCCceEEEEeCC-------------CCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC-CCCcee
Q 017520          192 ILEGKPHGQLLKYDPS-------------SNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE-RKGKLE  255 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~-------------t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~-~~~~~~  255 (370)
                            ...+|++..+             ..+++.+........|+++|++|. +|+++...  |.+++.+++ ...+.+
T Consensus       152 ------s~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~~~aI~~w~~~~~~~~~~~~  224 (287)
T PF03022_consen  152 ------SRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVEQNAIGCWDPDGPYTPENFE  224 (287)
T ss_dssp             -------SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECCCTEEEEEETTTSB-GCCEE
T ss_pred             ------CCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCCCCeEEEEeCCCCcCccchh
Confidence                  2356666421             012233333234567999999887 99998876  999998764 222344


Q ss_pred             eeccCC--CCCCCceeECC--CCCEEEEEec
Q 017520          256 TFAENL--PGAPDNINLAP--DGTFWIAIIK  282 (370)
Q Consensus       256 ~~~~~~--~g~p~~i~~d~--~G~lwv~~~~  282 (370)
                      .+....  -..|+++.+++  +|.+|+.++.
T Consensus       225 ~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  225 ILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             EEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             eeEEcCceeeccceeeeccccCceEEEEECc
Confidence            443221  24799999999  9999999865

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.45  E-value=0.00011  Score=69.79  Aligned_cols=123  Identities=14%  Similarity=0.124  Sum_probs=73.0

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCCC-CCCceeECCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLPG-APDNINLAPD  273 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~g-~p~~i~~d~~  273 (370)
                      ..+.++.+|.++++...... .......++  +++.+|+....+ |+.+|.+..+.    .+.. ...+ ......+ .+
T Consensus       249 ~~g~l~a~d~~tG~~~W~~~-~~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~----~W~~~~~~~~~~ssp~i-~g  320 (377)
T TIGR03300       249 YQGRVAALDLRSGRVLWKRD-ASSYQGPAV--DDNRLYVTDADGVVVALDRRSGSE----LWKNDELKYRQLTAPAV-VG  320 (377)
T ss_pred             cCCEEEEEECCCCcEEEeec-cCCccCceE--eCCEEEEECCCCeEEEEECCCCcE----EEccccccCCccccCEE-EC
Confidence            35789999998776543222 222223333  345689888777 99999764321    1110 1111 1111222 24


Q ss_pred             CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECC
Q 017520          274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDN  352 (370)
Q Consensus       274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g  352 (370)
                      +++|++...+                                   .++.+|. +|+++..+....+.   ..+.....++
T Consensus       321 ~~l~~~~~~G-----------------------------------~l~~~d~~tG~~~~~~~~~~~~---~~~sp~~~~~  362 (377)
T TIGR03300       321 GYLVVGDFEG-----------------------------------YLHWLSREDGSFVARLKTDGSG---IASPPVVVGD  362 (377)
T ss_pred             CEEEEEeCCC-----------------------------------EEEEEECCCCCEEEEEEcCCCc---cccCCEEECC
Confidence            6788887554                                   5888886 59999988764432   2334455678


Q ss_pred             EEEEEeCCCCeEE
Q 017520          353 HLYVISLTSNFIG  365 (370)
Q Consensus       353 ~L~~gs~~~~~i~  365 (370)
                      +||+++.++.-++
T Consensus       363 ~l~v~~~dG~l~~  375 (377)
T TIGR03300       363 GLLVQTRDGDLYA  375 (377)
T ss_pred             EEEEEeCCceEEE
Confidence            8999999887554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.44  E-value=0.00018  Score=63.37  Aligned_cols=171  Identities=16%  Similarity=0.152  Sum_probs=98.9

Q ss_pred             EEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEE-Eee-cCCc
Q 017520           85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF-LSY-VNGS  158 (370)
Q Consensus        85 ~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~-~~~-~~g~  158 (370)
                      ++..+|.+|+++.++.|+.++  +|+...-....+... ....-.++.+|++...+.++.++ ++| ...- ... .+..
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~  110 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA  110 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeecccccccccceeeeEecccCCcceeeeecccccccc
Confidence            554688999999999999999  787654444333333 32233478899988666799999 888 4332 111 1111


Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc------------ceEE
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN------------GVAL  226 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~------------gi~~  226 (370)
                      ........+++ ++.+|++..                  .+.|+.+|+++|+....... ..+.            +-.+
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~  170 (238)
T PF13360_consen  111 GVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPV  170 (238)
T ss_dssp             STB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEE
T ss_pred             ccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceE
Confidence            12222334444 456777753                  47899999998877433222 2211            2222


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..++ .+|++...+ +..+|..+.+    ..+... ...+..+....++.+|+++..
T Consensus       171 ~~~~-~v~~~~~~g~~~~~d~~tg~----~~w~~~-~~~~~~~~~~~~~~l~~~~~~  221 (238)
T PF13360_consen  171 ISDG-RVYVSSGDGRVVAVDLATGE----KLWSKP-ISGIYSLPSVDGGTLYVTSSD  221 (238)
T ss_dssp             CCTT-EEEEECCTSSEEEEETTTTE----EEEEEC-SS-ECECEECCCTEEEEEETT
T ss_pred             EECC-EEEEEcCCCeEEEEECCCCC----EEEEec-CCCccCCceeeCCEEEEEeCC
Confidence            2344 689988777 7777876542    123212 222233334556788888843

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.43  E-value=6.7e-05  Score=71.83  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=116.2

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeec-CCcccccc
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV-NGSKLRFA  163 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~-~g~~~~~~  163 (370)
                      ++.+|+++.+|.|+.+|  +|+...-....+.......+. ++.+|++...+.++.+| ++| ...-.... +.......
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~  198 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE  198 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence            57899999889999999  777544333233222123343 67899987666799999 688 33322211 10000000


Q ss_pred             cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc---------eEEcc--CCCE
Q 017520          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG---------VALSR--DEDY  232 (370)
Q Consensus       164 ~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g---------i~~~~--dg~~  232 (370)
                      ..-+++ +|.+|++..                  ++.++.+|.++++..... ....+.+         +..+|  .++.
T Consensus       199 ~sP~v~-~~~v~~~~~------------------~g~v~a~d~~~G~~~W~~-~~~~~~~~~~~~~~~~~~~sP~v~~~~  258 (394)
T PRK11138        199 SAPATA-FGGAIVGGD------------------NGRVSAVLMEQGQLIWQQ-RISQPTGATEIDRLVDVDTTPVVVGGV  258 (394)
T ss_pred             CCCEEE-CCEEEEEcC------------------CCEEEEEEccCChhhhee-ccccCCCccchhcccccCCCcEEECCE
Confidence            111232 466777743                  367888888777543211 1111110         11111  2345


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  311 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (370)
                      +|++...+ ++.+|....+.    .+..... .+..+.. .+|++|+++..+                            
T Consensus       259 vy~~~~~g~l~ald~~tG~~----~W~~~~~-~~~~~~~-~~~~vy~~~~~g----------------------------  304 (394)
T PRK11138        259 VYALAYNGNLVALDLRSGQI----VWKREYG-SVNDFAV-DGGRIYLVDQND----------------------------  304 (394)
T ss_pred             EEEEEcCCeEEEEECCCCCE----EEeecCC-CccCcEE-ECCEEEEEcCCC----------------------------
Confidence            88887766 99999765421    2211111 1223333 357899987654                            


Q ss_pred             ccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          312 ITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       312 ~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                             .++.+|. +|+.++......+.   ..+.....+++||+++..+. |..++
T Consensus       305 -------~l~ald~~tG~~~W~~~~~~~~---~~~sp~v~~g~l~v~~~~G~-l~~ld  351 (394)
T PRK11138        305 -------RVYALDTRGGVELWSQSDLLHR---LLTAPVLYNGYLVVGDSEGY-LHWIN  351 (394)
T ss_pred             -------eEEEEECCCCcEEEcccccCCC---cccCCEEECCEEEEEeCCCE-EEEEE
Confidence                   5888885 68877765443322   22333346788888877653 43343

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.42  E-value=0.0003  Score=68.13  Aligned_cols=199  Identities=15%  Similarity=0.118  Sum_probs=118.4

Q ss_pred             ceEEcCCCc-EE-EEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IY-TAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~-v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~  150 (370)
                      +.++++||. |. +..  .+..|+.++  +|+.+.+....+... .+++++||+ |++....   ..|+.++ +++ .+.
T Consensus       203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~  281 (429)
T PRK03629        203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  281 (429)
T ss_pred             eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            457788885 33 332  234688887  566555543333344 688999996 5544322   2488888 566 555


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      +... .    .......++|||+ |+++...               .....||++|.+++..+.+...........+++|
T Consensus       282 lt~~-~----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpD  341 (429)
T PRK03629        282 VTDG-R----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  341 (429)
T ss_pred             ccCC-C----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEECCC
Confidence            4322 1    1344678999996 5555321               0224799999988777665443334456889999


Q ss_pred             CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE-EecCchhHHHhhhcchhHHHHHHhC
Q 017520          230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA-IIKLDARRMKILNSSKLIKHVLAAY  304 (370)
Q Consensus       230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~-~~~~~~~~~~~~~~~~~~~~~~~~~  304 (370)
                      |+.++++...+    |+.+++++.   ..+.+...  ..-....+++||...+. ...+                     
T Consensus       342 G~~Ia~~~~~~g~~~I~~~dl~~g---~~~~Lt~~--~~~~~p~~SpDG~~i~~~s~~~---------------------  395 (429)
T PRK03629        342 GKFMVMVSSNGGQQHIAKQDLATG---GVQVLTDT--FLDETPSIAPNGTMVIYSSSQG---------------------  395 (429)
T ss_pred             CCEEEEEEccCCCceEEEEECCCC---CeEEeCCC--CCCCCceECCCCCEEEEEEcCC---------------------
Confidence            99887765432    888887654   23333221  11234678899974333 3322                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                 ....+..++.+|+..+.+...+|.
T Consensus       396 -----------~~~~l~~~~~~G~~~~~l~~~~~~  419 (429)
T PRK03629        396 -----------MGSVLNLVSTDGRFKARLPATDGQ  419 (429)
T ss_pred             -----------CceEEEEEECCCCCeEECccCCCC
Confidence                       013466778888887777654443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=0.00037  Score=67.44  Aligned_cols=199  Identities=14%  Similarity=0.169  Sum_probs=116.9

Q ss_pred             ceEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~  150 (370)
                      +.++.+||+ |++.+ .  +..|+.++  +|+...+....+... ..++++||+ |+++...   ..|+.++ ..+ .+.
T Consensus       200 ~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  278 (427)
T PRK02889        200 SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRR  278 (427)
T ss_pred             cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcEE
Confidence            347778885 44443 2  34599998  566655544444445 788999996 5443222   2477887 444 444


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      +... .    .......+++||+ |+++...               .....||.++.+++..+.+...........+++|
T Consensus       279 lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpD  338 (427)
T PRK02889        279 LTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPD  338 (427)
T ss_pred             CCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECCC
Confidence            3221 1    1223467899996 6655321               1234688998876666554322223345789999


Q ss_pred             CCEEEEEeCC-c---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520          230 EDYVVVCESW-K---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAY  304 (370)
Q Consensus       230 g~~l~v~~~~-~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (370)
                      |+.++++... +   |+++++++..   ...+...  .......+++||+ |+.+...+                     
T Consensus       339 G~~Ia~~s~~~g~~~I~v~d~~~g~---~~~lt~~--~~~~~p~~spdg~~l~~~~~~~---------------------  392 (427)
T PRK02889        339 GKLLAYISRVGGAFKLYVQDLATGQ---VTALTDT--TRDESPSFAPNGRYILYATQQG---------------------  392 (427)
T ss_pred             CCEEEEEEccCCcEEEEEEECCCCC---eEEccCC--CCccCceECCCCCEEEEEEecC---------------------
Confidence            9988766543 2   8888876542   2333221  2234577889996 44443322                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                 ....++.++.+|+..+.+..+.|.
T Consensus       393 -----------g~~~l~~~~~~g~~~~~l~~~~g~  416 (427)
T PRK02889        393 -----------GRSVLAAVSSDGRIKQRLSVQGGD  416 (427)
T ss_pred             -----------CCEEEEEEECCCCceEEeecCCCC
Confidence                       124577778888887777665554

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.39  E-value=0.00058  Score=66.27  Aligned_cols=153  Identities=15%  Similarity=0.093  Sum_probs=89.7

Q ss_pred             eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .|+.++ +|. .+.+........ ..++++||+ | |+....  ..|+.++ .+| .+.+.. ..+    .....+++||
T Consensus       183 ~l~~~d~dg~~~~~lt~~~~~v~-~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  256 (435)
T PRK05137        183 RLAIMDQDGANVRYLTDGSSLVL-TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGN-FPG----MTFAPRFSPD  256 (435)
T ss_pred             EEEEECCCCCCcEEEecCCCCeE-eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeec-CCC----cccCcEECCC
Confidence            566666 443 333333333344 788899996 4 333221  3588888 566 544432 122    2345688999


Q ss_pred             Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL  246 (370)
Q Consensus       172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~  246 (370)
                      |+ |.++...               .....||.+|.+++..+.+...........+++||+.++++.. .+   |+++++
T Consensus       257 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~  321 (435)
T PRK05137        257 GRKVVMSLSQ---------------GGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNA  321 (435)
T ss_pred             CCEEEEEEec---------------CCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEEC
Confidence            95 6555321               1335799999988877766544334456889999998777653 32   899997


Q ss_pred             CCCCCCceeeeccCCCCCCCceeECCCCCEE
Q 017520          247 KGERKGKLETFAENLPGAPDNINLAPDGTFW  277 (370)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  277 (370)
                      ++..   .+.+... .+.......++||+..
T Consensus       322 ~g~~---~~~lt~~-~~~~~~~~~SpdG~~i  348 (435)
T PRK05137        322 DGSN---PRRISFG-GGRYSTPVWSPRGDLI  348 (435)
T ss_pred             CCCC---eEEeecC-CCcccCeEECCCCCEE
Confidence            7642   2333211 2223346678888633

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.37  E-value=0.00037  Score=67.52  Aligned_cols=200  Identities=16%  Similarity=0.168  Sum_probs=118.1

Q ss_pred             cceEEcCCCc-E-EEEec--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eE
Q 017520           82 EDASMDKNGV-I-YTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VE  149 (370)
Q Consensus        82 ~~i~~d~~G~-l-~v~~~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~  149 (370)
                      .+..+++||+ | |+...  ...|+.++  +|+.+.+....+... ...+++||+ |++....   ..|+.++ .++ .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            3447778884 4 44433  34688888  566665544444444 678999996 5443322   2488888 556 55


Q ss_pred             EEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      .+... .    .......+++||+ |+++...               .+...||++|.++++.+.+...........+++
T Consensus       281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            44321 1    1223457889985 6666321               133579999988787765543323334568999


Q ss_pred             CCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEE-EEEecCchhHHHhhhcchhHHHHHHh
Q 017520          229 DEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW-IAIIKLDARRMKILNSSKLIKHVLAA  303 (370)
Q Consensus       229 dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw-v~~~~~~~~~~~~~~~~~~~~~~~~~  303 (370)
                      ||+.++++....    |+++|+++.   ..+.+...  +......+++||+.. .+...+                    
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg---~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~--------------------  395 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRG---SVRILTDT--SLDESPSVAPNGTMLIYATRQQ--------------------  395 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCC---CEEEccCC--CCCCCceECCCCCEEEEEEecC--------------------
Confidence            999988876532    888888764   23333221  122345778888633 333221                    


Q ss_pred             CCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       304 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                  ....++.++.+|+..+.+..+.|.
T Consensus       396 ------------g~~~l~~~~~~g~~~~~l~~~~g~  419 (430)
T PRK00178        396 ------------GRGVLMLVSINGRVRLPLPTAQGE  419 (430)
T ss_pred             ------------CceEEEEEECCCCceEECcCCCCC
Confidence                        124577778888777666555553

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.34  E-value=0.00064  Score=64.26  Aligned_cols=181  Identities=19%  Similarity=0.243  Sum_probs=118.6

Q ss_pred             CCcCCCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEE--ecCCCceeceEEcCCCcEEEEeCCCceEEEc-C-CC-
Q 017520           76 GSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E-DG-  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~-~g-  147 (370)
                      |.-.+-.++++.++| .||.++.+|.|..|+  .|.--.+.  ...+... +|+.+..+.++.+.++.-+.+++ . +| 
T Consensus       318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~-~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK-GMAASESGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE-EEeecCCCcEEEEecCCeEEEEecccCcc
Confidence            443455667787766 688999999999999  44433331  2334566 89998889999998887787777 3 33 


Q ss_pred             eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~  226 (370)
                      -........    ..|..+++.++| .+.++..                   ..|..+...++ +... .-...+.++++
T Consensus       397 t~~~~~~lg----~QP~~lav~~d~~~avv~~~-------------------~~iv~l~~~~~-~~~~-~~~y~~s~vAv  451 (603)
T KOG0318|consen  397 TKSEVVKLG----SQPKGLAVLSDGGTAVVACI-------------------SDIVLLQDQTK-VSSI-PIGYESSAVAV  451 (603)
T ss_pred             cccceeecC----CCceeEEEcCCCCEEEEEec-------------------CcEEEEecCCc-ceee-ccccccceEEE
Confidence            221111111    356789999887 4555532                   23444443322 2221 23457889999


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +++++.+.|....+ |..|.+.+....+..... ...+-+..+++++||.+.+++-..
T Consensus       452 ~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~-~h~a~iT~vaySpd~~yla~~Da~  508 (603)
T KOG0318|consen  452 SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL-EHRAAITDVAYSPDGAYLAAGDAS  508 (603)
T ss_pred             cCCCCEEEEecccceEEEEEecCCcccceeeee-cccCCceEEEECCCCcEEEEeccC
Confidence            99999888888877 999999886432221222 345567889999999988887654

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.33  E-value=2.6e-05  Score=66.44  Aligned_cols=137  Identities=15%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             ceEEcCCCcEEEEe----------cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCC-cEEEEeCC-Cce--EEEc-CC
Q 017520           83 DASMDKNGVIYTAT----------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGL--HKVS-ED  146 (370)
Q Consensus        83 ~i~~d~~G~l~v~~----------~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi--~~~~-~~  146 (370)
                      +--+|++|+-|.|+          ..|.++++. +++++.+...-+-++ ||+.|.|- .+|+.|.. ..|  +.++ ++
T Consensus       113 DgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~t  191 (310)
T KOG4499|consen  113 DGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPT  191 (310)
T ss_pred             cCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCc
Confidence            34678899999887          245666666 777887777778889 99999776 47887765 456  4455 66


Q ss_pred             C----eEEEEeecCCc--ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCC
Q 017520          147 G----VENFLSYVNGS--KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFY  219 (370)
Q Consensus       147 g----~~~~~~~~~g~--~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~  219 (370)
                      |    .+.+.+.....  ....|.++++|.+|+|||+..+                 .++|+++||.+|+.-.-. -...
T Consensus       192 G~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~  254 (310)
T KOG4499|consen  192 GDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTP  254 (310)
T ss_pred             ccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCC
Confidence            6    23333322212  2347889999999999999763                 479999999988763211 1112


Q ss_pred             CccceEEccC-CCEEEEEe
Q 017520          220 FANGVALSRD-EDYVVVCE  237 (370)
Q Consensus       220 ~p~gi~~~~d-g~~l~v~~  237 (370)
                      .....||-.. =+.+|++.
T Consensus       255 qitsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  255 QITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             ceEEEEecCCCccEEEEEe
Confidence            2334555433 23455554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.31  E-value=0.00018  Score=63.75  Aligned_cols=193  Identities=15%  Similarity=0.184  Sum_probs=103.5

Q ss_pred             CceeceEEcCC-CcEEEEeCC-CceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520          118 QTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       118 ~p~~gl~~d~~-G~L~v~~~~-~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      .+. ||+++++ ++||..... ..|+.++.+|  ++.+.  ..|  +.-+.+|+.-.+|.+.+++.              
T Consensus        23 e~S-GLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~--l~g--~~D~EgI~y~g~~~~vl~~E--------------   83 (248)
T PF06977_consen   23 ELS-GLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIP--LDG--FGDYEGITYLGNGRYVLSEE--------------   83 (248)
T ss_dssp             -EE-EEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE---SS---SSEEEEEE-STTEEEEEET--------------
T ss_pred             Ccc-ccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEe--CCC--CCCceeEEEECCCEEEEEEc--------------
Confidence            456 9999986 568876544 5688888777  33331  222  45678899988888888764              


Q ss_pred             ccCCCceEEEEeC--CCCeE-----EEEecC-----CCCccceEEccCCCEEEEEeCCc---EEEEEe--CCCCCCcee-
Q 017520          194 EGKPHGQLLKYDP--SSNIT-----TLVADG-----FYFANGVALSRDEDYVVVCESWK---CRKYWL--KGERKGKLE-  255 (370)
Q Consensus       194 ~~~~~g~l~~~d~--~t~~~-----~~~~~~-----~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~--~~~~~~~~~-  255 (370)
                         ..++|+.++.  .+...     +.+.-+     -..-.|+++|+.++.+|++....   |+.++.  .+....... 
T Consensus        84 ---r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~  160 (248)
T PF06977_consen   84 ---RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD  160 (248)
T ss_dssp             ---TTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-
T ss_pred             ---CCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccc
Confidence               2356666554  22221     111111     12347999999988888887655   444443  111100000 


Q ss_pred             -eec--cCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 017520          256 -TFA--ENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR  331 (370)
Q Consensus       256 -~~~--~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~  331 (370)
                       .+.  ...-.-+.++++++ .|++||-....                                  .+++++|.+|+++.
T Consensus       161 ~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----------------------------------~~l~~~d~~G~~~~  206 (248)
T PF06977_consen  161 QDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----------------------------------RLLLELDRQGRVVS  206 (248)
T ss_dssp             HHHH-HT--SS---EEEEETTTTEEEEEETTT----------------------------------TEEEEE-TT--EEE
T ss_pred             cccccccceeccccceEEcCCCCeEEEEECCC----------------------------------CeEEEECCCCCEEE
Confidence             000  00112367888876 56799887665                                  36999999999999


Q ss_pred             EEeCCCCC-----ccccceeEEEE-CCEEEEEeCCCCeEEEE
Q 017520          332 NLVDPTGQ-----LMSFVTSGLQV-DNHLYVISLTSNFIGKV  367 (370)
Q Consensus       332 ~~~~~~g~-----~~~~~t~~~~~-~g~L~~gs~~~~~i~~~  367 (370)
                      .+.-..|.     .+.-.-.++.+ +|+|||.| ..|...++
T Consensus       207 ~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  207 SLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             EEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             EEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            88665542     12223455544 59999999 46666665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.28  E-value=0.00023  Score=62.82  Aligned_cols=146  Identities=19%  Similarity=0.183  Sum_probs=92.3

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEe
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~  153 (370)
                      ..|+|++- ++.||.-+ .++..+.+|  +-+...-....+... ||+.| ...||++|....|+.+|+..   .+.+.-
T Consensus        91 FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~d-g~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen   91 FGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSD-GKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             -EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEEC-SSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             cceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcC-CCEEEEECCccceEEECCcccceEEEEEE
Confidence            35666665 44788777 667777777  333322233456788 99976 45899999878899999543   333322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----------C-----
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------G-----  217 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----------~-----  217 (370)
                      ...+.+....|-|..- +|.||.-..                 .+..|.++||++|++.-..+           .     
T Consensus       168 ~~~g~pv~~LNELE~i-~G~IyANVW-----------------~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~  229 (264)
T PF05096_consen  168 TDNGRPVSNLNELEYI-NGKIYANVW-----------------QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPD  229 (264)
T ss_dssp             EETTEE---EEEEEEE-TTEEEEEET-----------------TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--T
T ss_pred             EECCEECCCcEeEEEE-cCEEEEEeC-----------------CCCeEEEEeCCCCeEEEEEEhhHhhhccccccccccc
Confidence            2356777788888774 799987754                 34689999999999876531           1     


Q ss_pred             CCCccceEEccCCCEEEEEeCCc--EEEEEe
Q 017520          218 FYFANGVALSRDEDYVVVCESWK--CRKYWL  246 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~  246 (370)
                      ..--||||++++++.+|++.-.-  ++.+.+
T Consensus       230 ~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  230 DDVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             TS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             CCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence            12348999999999999998643  666544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.27  E-value=0.00078  Score=65.39  Aligned_cols=168  Identities=12%  Similarity=0.079  Sum_probs=102.3

Q ss_pred             ceEEcCCCc-EE-EEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC-C--CceEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IY-TAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN-A--NGLHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~-v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~-~--~gi~~~~-~~g-~~~  150 (370)
                      +..+.+||. |. +..  .+..|+.++  +|+.+.+....+... +.++++||+ |+++.. .  ..|+.++ .++ .+.
T Consensus       206 ~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~  284 (435)
T PRK05137        206 TPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR  284 (435)
T ss_pred             eeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCceEE
Confidence            346778885 33 333  346799998  566665554444455 788999996 444332 2  3488888 555 554


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      +... .    .......+++||+ |+++...               .+...||++|.+++..+.+...........++||
T Consensus       285 Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Spd  344 (435)
T PRK05137        285 LTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPR  344 (435)
T ss_pred             ccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEECCC
Confidence            4321 1    1233468899995 6665321               1235799999887777666543333455789999


Q ss_pred             CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      |+.++++...+    |+.+++++..   .+.+..  ........+++||+.
T Consensus       345 G~~ia~~~~~~~~~~i~~~d~~~~~---~~~lt~--~~~~~~p~~spDG~~  390 (435)
T PRK05137        345 GDLIAFTKQGGGQFSIGVMKPDGSG---ERILTS--GFLVEGPTWAPNGRV  390 (435)
T ss_pred             CCEEEEEEcCCCceEEEEEECCCCc---eEeccC--CCCCCCCeECCCCCE
Confidence            99888775432    8888876532   222221  123456788899973

>PRK13684 Ycf48-like protein; Provisional

Probab=98.27  E-value=0.0026  Score=59.35  Aligned_cols=177  Identities=12%  Similarity=0.168  Sum_probs=91.6

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEecC---C-CceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEE
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFID---S-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~---~-~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~  151 (370)
                      ...+|++..+.+.|+....|.|++-. .| .++......   . ... ++.++ .++.|++.....|++-...|  ++.+
T Consensus        47 ~l~~v~F~d~~~g~avG~~G~il~T~DgG~tW~~~~~~~~~~~~~l~-~v~~~-~~~~~~~G~~g~i~~S~DgG~tW~~~  124 (334)
T PRK13684         47 NLLDIAFTDPNHGWLVGSNRTLLETNDGGETWEERSLDLPEENFRLI-SISFK-GDEGWIVGQPSLLLHTTDGGKNWTRI  124 (334)
T ss_pred             ceEEEEEeCCCcEEEEECCCEEEEEcCCCCCceECccCCccccccee-eeEEc-CCcEEEeCCCceEEEECCCCCCCeEc
Confidence            45667887666667555578888876 34 355432211   1 234 67776 34677775444566655445  5544


Q ss_pred             Eee--cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEcc
Q 017520          152 LSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSR  228 (370)
Q Consensus       152 ~~~--~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~  228 (370)
                      ...  .++    .+..+....++++|+...                  .|.|++-+-..+.++.+.... ...+++.+++
T Consensus       125 ~~~~~~~~----~~~~i~~~~~~~~~~~g~------------------~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~  182 (334)
T PRK13684        125 PLSEKLPG----SPYLITALGPGTAEMATN------------------VGAIYRTTDGGKNWEALVEDAAGVVRNLRRSP  182 (334)
T ss_pred             cCCcCCCC----CceEEEEECCCcceeeec------------------cceEEEECCCCCCceeCcCCCcceEEEEEECC
Confidence            211  112    233333333445565532                  366777665544555443332 2346778888


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++.. ++....+ +++-.-++.  .+.............++.+.++|++|+....+
T Consensus       183 ~g~~-v~~g~~G~i~~s~~~gg--~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G  235 (334)
T PRK13684        183 DGKY-VAVSSRGNFYSTWEPGQ--TAWTPHQRNSSRRLQSMGFQPDGNLWMLARGG  235 (334)
T ss_pred             CCeE-EEEeCCceEEEEcCCCC--CeEEEeeCCCcccceeeeEcCCCCEEEEecCC
Confidence            8764 4444444 655421221  11222211112234567777888888876554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.0013  Score=63.37  Aligned_cols=195  Identities=11%  Similarity=0.045  Sum_probs=119.6

Q ss_pred             EEcCCCc--EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEE
Q 017520           85 SMDKNGV--IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF  151 (370)
Q Consensus        85 ~~d~~G~--l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~  151 (370)
                      ...+||+  +|+.+ .  +..|+.++  +|+.+.+....+... ...+++||+ |.+....   ..|+.++ ++| .+.+
T Consensus       194 ~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~L  272 (419)
T PRK04043        194 KWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQI  272 (419)
T ss_pred             EECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEc
Confidence            5667885  66554 2  45799998  677776655444444 567889995 5544322   3588888 556 5555


Q ss_pred             EeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      ... .+    .-..-.++||| +|+|+...               .....||++|.++++.+.+..... .+ ..++|||
T Consensus       273 T~~-~~----~d~~p~~SPDG~~I~F~Sdr---------------~g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~SPDG  330 (419)
T PRK04043        273 TNY-PG----IDVNGNFVEDDKRIVFVSDR---------------LGYPNIFMKKLNSGSVEQVVFHGK-NN-SSVSTYK  330 (419)
T ss_pred             ccC-CC----ccCccEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEeCccCCC-cC-ceECCCC
Confidence            332 11    11123788999 58887542               133479999999888755543211 12 4899999


Q ss_pred             CEEEEEeCC---------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHH
Q 017520          231 DYVVVCESW---------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH  299 (370)
Q Consensus       231 ~~l~v~~~~---------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~  299 (370)
                      +.+.++...         . |+.+++++.   ..+.+...  +.-....+++||. ++.....+                
T Consensus       331 ~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g---~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~~----------------  389 (419)
T PRK04043        331 NYIVYSSRETNNEFGKNTFNLYLISTNSD---YIRRLTAN--GVNQFPRFSSDGGSIMFIKYLG----------------  389 (419)
T ss_pred             CEEEEEEcCCCcccCCCCcEEEEEECCCC---CeEECCCC--CCcCCeEECCCCCEEEEEEccC----------------
Confidence            987776532         2 888887664   23333321  2222367889996 44444322                


Q ss_pred             HHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          300 VLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                      ....+..++.+|+....+....|.
T Consensus       390 ----------------~~~~L~~~~l~g~~~~~l~~~~g~  413 (419)
T PRK04043        390 ----------------NQSALGIIRLNYNKSFLFPLKVGK  413 (419)
T ss_pred             ----------------CcEEEEEEecCCCeeEEeecCCCc
Confidence                            124578889999888877765665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.25  E-value=0.0019  Score=62.49  Aligned_cols=154  Identities=17%  Similarity=0.159  Sum_probs=89.2

Q ss_pred             eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .|+..+ +|. .+.+........ ..+++|||+ | |+....  ..++.++ .+| .+.+... .+    .....+++||
T Consensus       180 ~l~~~d~dg~~~~~lt~~~~~~~-~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~----~~~~~~~SPD  253 (429)
T PRK03629        180 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR----HNGAPAFSPD  253 (429)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC----CcCCeEECCC
Confidence            455555 443 233332222334 788999996 3 333211  3477777 556 4444321 22    2345789999


Q ss_pred             Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe-CCc---EEEEEe
Q 017520          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE-SWK---CRKYWL  246 (370)
Q Consensus       172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~-~~~---l~~~~~  246 (370)
                      |+ |+++...               .....|+.+|.++++.+.+...........++|||+.++++. ..+   |+++++
T Consensus       254 G~~La~~~~~---------------~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~  318 (429)
T PRK03629        254 GSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNI  318 (429)
T ss_pred             CCEEEEEEcC---------------CCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEEC
Confidence            95 6665321               123469999998888776655444556789999999775554 333   888887


Q ss_pred             CCCCCCceeeeccCCCCCCCceeECCCCCEEE
Q 017520          247 KGERKGKLETFAENLPGAPDNINLAPDGTFWI  278 (370)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  278 (370)
                      ++..   .+.+. ...+......+++||+..+
T Consensus       319 ~~g~---~~~lt-~~~~~~~~~~~SpDG~~Ia  346 (429)
T PRK03629        319 NGGA---PQRIT-WEGSQNQDADVSSDGKFMV  346 (429)
T ss_pred             CCCC---eEEee-cCCCCccCEEECCCCCEEE
Confidence            6642   23332 1122234577888886443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.24  E-value=0.0013  Score=63.29  Aligned_cols=172  Identities=13%  Similarity=0.123  Sum_probs=101.9

Q ss_pred             eEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEE
Q 017520           84 ASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENF  151 (370)
Q Consensus        84 i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~  151 (370)
                      ..+++||+ |++.. .  ...|+.++  +|+.+......+... ++++++||+ |+++...   ..|+.++ .++ .+.+
T Consensus       195 p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l  273 (417)
T TIGR02800       195 PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL  273 (417)
T ss_pred             ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence            35667775 44443 2  24688888  566655544444556 788999996 6554332   2488888 455 4443


Q ss_pred             EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      ... .+    ......+.+||+ |+++...               .....||.+|.++++.+.+..........++++||
T Consensus       274 ~~~-~~----~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg  333 (417)
T TIGR02800       274 TNG-PG----IDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDG  333 (417)
T ss_pred             CCC-CC----CCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECCCC
Confidence            221 11    122457788885 5555321               12347999998877776665444455678999999


Q ss_pred             CEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520          231 DYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       231 ~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      +.++++....    |+.+++.+.   ..+.+..  ........+++||+ ++.+..
T Consensus       334 ~~i~~~~~~~~~~~i~~~d~~~~---~~~~l~~--~~~~~~p~~spdg~~l~~~~~  384 (417)
T TIGR02800       334 DLIAFVHREGGGFNIAVMDLDGG---GERVLTD--TGLDESPSFAPNGRMILYATT  384 (417)
T ss_pred             CEEEEEEccCCceEEEEEeCCCC---CeEEccC--CCCCCCceECCCCCEEEEEEe
Confidence            9888877642    888887653   2233221  11233456778886 444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.22  E-value=0.0021  Score=62.52  Aligned_cols=132  Identities=12%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             ceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520          122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       122 gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      ...+++||+ |+.+...   ..|+.++ .+| .+.+.. ..+    .....+++|||+ |+++...              
T Consensus       222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~-~~g----~~~~~~wSPDG~~La~~~~~--------------  282 (448)
T PRK04792        222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTS-FPG----INGAPRFSPDGKKLALVLSK--------------  282 (448)
T ss_pred             CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecC-CCC----CcCCeeECCCCCEEEEEEeC--------------
Confidence            678999996 4333222   2488888 555 444422 122    223568999996 7665321              


Q ss_pred             cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINL  270 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  270 (370)
                       .....||.+|.++++.+.+..........++++||+.++++.. .+   |+++++++.+   .+.+.. .........+
T Consensus       283 -~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~---~~~Lt~-~g~~~~~~~~  357 (448)
T PRK04792        283 -DGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK---VSRLTF-EGEQNLGGSI  357 (448)
T ss_pred             -CCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---EEEEec-CCCCCcCeeE
Confidence             1234699999988887766554444566889999998877654 22   8888886542   222211 1112234577


Q ss_pred             CCCCCEE
Q 017520          271 APDGTFW  277 (370)
Q Consensus       271 d~~G~lw  277 (370)
                      ++||+..
T Consensus       358 SpDG~~l  364 (448)
T PRK04792        358 TPDGRSM  364 (448)
T ss_pred             CCCCCEE
Confidence            8888643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.0033  Score=60.56  Aligned_cols=153  Identities=14%  Similarity=0.083  Sum_probs=90.9

Q ss_pred             eEEEEe-CCeE-EEEEecCCCceeceEEcCCCc--EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520          100 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH--LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (370)
Q Consensus       100 ~I~~~~-~g~~-~~~~~~~~~p~~gl~~d~~G~--L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~  170 (370)
                      +|+..| +|.- +.+... +... ...+++||+  +|+....   ..|+.++ .+| .+.+.. ..+    ......++|
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g----~~~~~~~SP  242 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-GLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG----MLVVSDVSK  242 (419)
T ss_pred             eEEEECCCCCceeEEccC-CCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC----cEEeeEECC
Confidence            566666 6653 333332 3233 678889995  5654433   2488888 667 555543 222    112346889


Q ss_pred             CC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC-c---EEEEE
Q 017520          171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-K---CRKYW  245 (370)
Q Consensus       171 ~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~-~---l~~~~  245 (370)
                      || .+.++...               ..+..||.+|.+++..+.+...-.......++|||+.++++... +   |++++
T Consensus       243 DG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~d  307 (419)
T PRK04043        243 DGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKK  307 (419)
T ss_pred             CCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEE
Confidence            99 47666431               13468999998888776654332223345799999988887643 2   99999


Q ss_pred             eCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          246 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      +++..   .+.+...  +. .+...++||...+-.
T Consensus       308 l~~g~---~~rlt~~--g~-~~~~~SPDG~~Ia~~  336 (419)
T PRK04043        308 LNSGS---VEQVVFH--GK-NNSSVSTYKNYIVYS  336 (419)
T ss_pred             CCCCC---eEeCccC--CC-cCceECCCCCEEEEE
Confidence            87642   3333211  11 235788899744433

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.21  E-value=0.0011  Score=64.75  Aligned_cols=177  Identities=16%  Similarity=0.224  Sum_probs=106.7

Q ss_pred             cceEEcCCCcEEEEe-cCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CC-C--eEE
Q 017520           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-ED-G--VEN  150 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~-g--~~~  150 (370)
                      .++.+.++|...+.. .++.+..++  .++   ............ ++++.++|...++....+ +..++ +. +  .++
T Consensus       163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~  241 (456)
T KOG0266|consen  163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKT  241 (456)
T ss_pred             EEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcEEEEecCCceEEEeeccCCCeEEEE
Confidence            345566788765544 566555555  333   112212222356 899999999777665554 44444 23 3  444


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~d  229 (370)
                      +.    |. ...++.+++.++|++.++-+                 .++.+..+|..+++....... -....++++++|
T Consensus       242 l~----gH-~~~v~~~~f~p~g~~i~Sgs-----------------~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d  299 (456)
T KOG0266|consen  242 LK----GH-STYVTSVAFSPDGNLLVSGS-----------------DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD  299 (456)
T ss_pred             ec----CC-CCceEEEEecCCCCEEEEec-----------------CCCcEEEEeccCCeEEEeeeccCCceEEEEECCC
Confidence            42    22 24678999999998888754                 457899999987666554443 345678999999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCEEEEEe
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ++.++.+...+ |..||+.+....-.+.+... .+..-..+.++++|.+.+...
T Consensus       300 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  300 GNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             CCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence            99777776666 88898766432101112111 111125577889996444433

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.21  E-value=0.0013  Score=63.68  Aligned_cols=170  Identities=14%  Similarity=0.159  Sum_probs=100.5

Q ss_pred             cceEEcCCCc-EEEEe-c--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eE
Q 017520           82 EDASMDKNGV-IYTAT-R--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VE  149 (370)
Q Consensus        82 ~~i~~d~~G~-l~v~~-~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~  149 (370)
                      .+..+.+||+ |.+.+ .  +..|+.++  +|+.+.+....+... .+++++||+ |+++....   .|+.++ .++ .+
T Consensus       207 ~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~  285 (429)
T PRK01742        207 MSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS  285 (429)
T ss_pred             ccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE
Confidence            4457888885 33333 2  34688888  565555543334444 788999997 55443222   377777 445 55


Q ss_pred             EEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      .+... .    .......+++||+ |+++...               ...-.||.++..++..+.+ ... . ....++|
T Consensus       286 ~lt~~-~----~~~~~~~wSpDG~~i~f~s~~---------------~g~~~I~~~~~~~~~~~~l-~~~-~-~~~~~Sp  342 (429)
T PRK01742        286 QLTSG-A----GNNTEPSWSPDGQSILFTSDR---------------SGSPQVYRMSASGGGASLV-GGR-G-YSAQISA  342 (429)
T ss_pred             eeccC-C----CCcCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEe-cCC-C-CCccCCC
Confidence            44321 1    1345678999996 6665321               1234788888876655544 221 1 3467899


Q ss_pred             CCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          229 DEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       229 dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ||+.++++...+++++|+.+.+   .+.+....  ......+++||+..+..
T Consensus       343 DG~~ia~~~~~~i~~~Dl~~g~---~~~lt~~~--~~~~~~~sPdG~~i~~~  389 (429)
T PRK01742        343 DGKTLVMINGDNVVKQDLTSGS---TEVLSSTF--LDESPSISPNGIMIIYS  389 (429)
T ss_pred             CCCEEEEEcCCCEEEEECCCCC---eEEecCCC--CCCCceECCCCCEEEEE
Confidence            9998888766558888876542   22222111  12456789999755554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.21  E-value=0.0016  Score=57.30  Aligned_cols=205  Identities=16%  Similarity=0.111  Sum_probs=111.0

Q ss_pred             CCeEEEEe--CCeEEEEEec---CCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520           98 DGWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (370)
Q Consensus        98 ~g~I~~~~--~g~~~~~~~~---~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~  170 (370)
                      +|.|..+|  +|+...-...   .+.+. ...+..++.+|+++..+.++.++ .+| ...-... ++ ++...   ..-.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~-~~~~~---~~~~   75 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPV-ATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PG-PISGA---PVVD   75 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEE-ETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SS-CGGSG---EEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCcc-ceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cc-cccce---eeec
Confidence            56778888  5654332222   12222 22454578999998778899999 688 3332222 22 11122   2335


Q ss_pred             CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCC----CCccceEEccCCCEEEEEeCCc-EEEE
Q 017520          171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGF----YFANGVALSRDEDYVVVCESWK-CRKY  244 (370)
Q Consensus       171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~----~~p~gi~~~~dg~~l~v~~~~~-l~~~  244 (370)
                      ++.+|+...                  .+.|+.+|..+++..... ...    ..........+++.+|+....+ |+.+
T Consensus        76 ~~~v~v~~~------------------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  137 (238)
T PF13360_consen   76 GGRVYVGTS------------------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVAL  137 (238)
T ss_dssp             TTEEEEEET------------------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEE
T ss_pred             ccccccccc------------------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEE
Confidence            678888863                  358999998777764431 111    1111223333467788888666 9999


Q ss_pred             EeCCCCCCceeeeccCCCCCCC---------ceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCC
Q 017520          245 WLKGERKGKLETFAENLPGAPD---------NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG  315 (370)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~g~p~---------~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (370)
                      |++.++.--....  ..+....         +-.+-.+|.+|++...+                                
T Consensus       138 d~~tG~~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g--------------------------------  183 (238)
T PF13360_consen  138 DPKTGKLLWKYPV--GEPRGSSPISSFSDINGSPVISDGRVYVSSGDG--------------------------------  183 (238)
T ss_dssp             ETTTTEEEEEEES--STT-SS--EEEETTEEEEEECCTTEEEEECCTS--------------------------------
T ss_pred             ecCCCcEEEEeec--CCCCCCcceeeecccccceEEECCEEEEEcCCC--------------------------------
Confidence            9765422111111  1110000         11122345788877654                                


Q ss_pred             CceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          316 GGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       316 ~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                         .++.+|. .|+.++... ..+    ........++.||+++ ....|..+++
T Consensus       184 ---~~~~~d~~tg~~~w~~~-~~~----~~~~~~~~~~~l~~~~-~~~~l~~~d~  229 (238)
T PF13360_consen  184 ---RVVAVDLATGEKLWSKP-ISG----IYSLPSVDGGTLYVTS-SDGRLYALDL  229 (238)
T ss_dssp             ---SEEEEETTTTEEEEEEC-SS-----ECECEECCCTEEEEEE-TTTEEEEEET
T ss_pred             ---eEEEEECCCCCEEEEec-CCC----ccCCceeeCCEEEEEe-CCCEEEEEEC
Confidence               2566674 566554322 222    2233455678999999 7777777765

...

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.19  E-value=0.0025  Score=55.82  Aligned_cols=215  Identities=16%  Similarity=0.203  Sum_probs=135.6

Q ss_pred             cEEEEecCCeEEEEe-C------Ce-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCc
Q 017520           91 VIYTATRDGWIKRLQ-D------GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGS  158 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~------g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~  158 (370)
                      .++-++.+..+..++ +      |. .+.+....-... +++..+||+..++....+..++.  .+|  .+.+....   
T Consensus        30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~-dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~---  105 (315)
T KOG0279|consen   30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVS-DVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHT---  105 (315)
T ss_pred             eEEEcccceEEEEEEeccCccccCceeeeeeccceEec-ceEEccCCceEEeccccceEEEEEecCCcEEEEEEecC---
Confidence            344555777777776 2      22 223333333455 78888999988876666766665  566  34443321   


Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCC-CEEEE
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDE-DYVVV  235 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg-~~l~v  235 (370)
                        ..+-.+++++|.+-.++-+                 .+..+..+|..++..-....+  -...+.+.|+|.. +-+++
T Consensus       106 --~dVlsva~s~dn~qivSGS-----------------rDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen  106 --KDVLSVAFSTDNRQIVSGS-----------------RDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             --CceEEEEecCCCceeecCC-----------------CcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence              3466789999987777744                 345677788764443333333  2345678899986 33444


Q ss_pred             EeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccccc
Q 017520          236 CESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT  313 (370)
Q Consensus       236 ~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
                      +....  |..+|+.+-+.  ...+. ...++.+-+++++||.+-+.-..                               
T Consensus       167 s~s~DktvKvWnl~~~~l--~~~~~-gh~~~v~t~~vSpDGslcasGgk-------------------------------  212 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQL--RTTFI-GHSGYVNTVTVSPDGSLCASGGK-------------------------------  212 (315)
T ss_pred             EccCCceEEEEccCCcch--hhccc-cccccEEEEEECCCCCEEecCCC-------------------------------
Confidence            43333  77777765432  22232 34556777899999998877322                               


Q ss_pred             CCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          314 LGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       314 ~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                         .|.++..| .+++-++++...     ..+.++.+..++.|+.-..++.|.+.+++
T Consensus       213 ---dg~~~LwdL~~~k~lysl~a~-----~~v~sl~fspnrywL~~at~~sIkIwdl~  262 (315)
T KOG0279|consen  213 ---DGEAMLWDLNEGKNLYSLEAF-----DIVNSLCFSPNRYWLCAATATSIKIWDLE  262 (315)
T ss_pred             ---CceEEEEEccCCceeEeccCC-----CeEeeEEecCCceeEeeccCCceEEEecc
Confidence               24556666 457777766543     36788888889999999999999888764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.17  E-value=0.00025  Score=60.99  Aligned_cols=208  Identities=15%  Similarity=0.109  Sum_probs=126.4

Q ss_pred             cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520           97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus        97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .|..|.-|.  +|. ..++....+..+ .+.+.+|+..+.+.....|..|| .++ -..+.. +++. -+.+..+.|..+
T Consensus        18 YDhTIRfWqa~tG~C~rTiqh~dsqVN-rLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t-~e~h-~kNVtaVgF~~d   94 (311)
T KOG0315|consen   18 YDHTIRFWQALTGICSRTIQHPDSQVN-RLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVAT-FEGH-TKNVTAVGFQCD   94 (311)
T ss_pred             CcceeeeeehhcCeEEEEEecCcccee-eEEEcCCcchhhhccCCeeEEEEccCCCCCceeE-Eecc-CCceEEEEEeec
Confidence            677777777  675 455666777888 99999999877776666677777 433 111211 1221 145667788889


Q ss_pred             CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCC
Q 017520          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGER  250 (370)
Q Consensus       172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~  250 (370)
                      |+-..+.+                 .+|.+-.+|...-..........-.|.+.+.|....|++++..+ |+++|+....
T Consensus        95 grWMyTgs-----------------eDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~  157 (311)
T KOG0315|consen   95 GRWMYTGS-----------------EDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS  157 (311)
T ss_pred             CeEEEecC-----------------CCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCc
Confidence            98555533                 45777778876544443333334458899999988899999888 9999986531


Q ss_pred             CCceeeeccCCCCCCCceeECCCCCEEEEEecCch-hHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 017520          251 KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI  329 (370)
Q Consensus       251 ~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~  329 (370)
                      -  .+..+....-....+++++||...++.+...+ -.++.+...     ....+ ..+..+..+..|+.-.+++|+++.
T Consensus       158 c--~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~-----~~s~l-~P~~k~~ah~~~il~C~lSPd~k~  229 (311)
T KOG0315|consen  158 C--THELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQ-----TASEL-EPVHKFQAHNGHILRCLLSPDVKY  229 (311)
T ss_pred             c--ccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCC-----ccccc-eEhhheecccceEEEEEECCCCcE
Confidence            1  11122111112345778888887777654332 222222210     00000 011123457788888888999988


Q ss_pred             EEE
Q 017520          330 IRN  332 (370)
Q Consensus       330 ~~~  332 (370)
                      +..
T Consensus       230 lat  232 (311)
T KOG0315|consen  230 LAT  232 (311)
T ss_pred             EEe
Confidence            774

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.16  E-value=0.0016  Score=60.67  Aligned_cols=174  Identities=14%  Similarity=0.146  Sum_probs=94.3

Q ss_pred             CCcceEEcCCC-cEEEEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE--EcCCC-eEEE
Q 017520           80 HPEDASMDKNG-VIYTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK--VSEDG-VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~--~~~~g-~~~~  151 (370)
                      .|+.+++++|| .||+.+  .+..|..+|  .+++..-....+... .+...++.....|- +.....  ++.+| ...-
T Consensus       106 ~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~-vy~t~e~~~~~~~~-Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       106 YPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH-IFPTANDTFFMHCR-DGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE-EEEecCCccEEEee-cCceEEEEecCCCceEEe
Confidence            45599999998 589888  378899999  666544333344333 34443333443332 233333  33445 2211


Q ss_pred             Eee-cCC---cccccccceEEcC-CCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE------ecC--
Q 017520          152 LSY-VNG---SKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV------ADG--  217 (370)
Q Consensus       152 ~~~-~~g---~~~~~~~~l~~d~-~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~------~~~--  217 (370)
                      ... +.+   .-+..|   .+.+ +|+ +|++.                   .|.|+.+|..+......      ...  
T Consensus       184 ~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~-------------------eG~V~~id~~~~~~~~~~~~~~~~~~~~  241 (352)
T TIGR02658       184 PTEVFHPEDEYLINHP---AYSNKSGRLVWPTY-------------------TGKIFQIDLSSGDAKFLPAIEAFTEAEK  241 (352)
T ss_pred             eeeeecCCccccccCC---ceEcCCCcEEEEec-------------------CCeEEEEecCCCcceecceeeecccccc
Confidence            111 111   111223   2233 665 55552                   27899998543322211      111  


Q ss_pred             --CCCccc---eEEccCCCEEEEEe----------CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          218 --FYFANG---VALSRDEDYVVVCE----------SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       218 --~~~p~g---i~~~~dg~~l~v~~----------~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                        ...|.|   +++++|++.+||..          .++ |+++|..+.+   ..... .....|.++++++||+ +.+.+
T Consensus       242 ~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i-~vG~~~~~iavS~Dgkp~lyvt  317 (352)
T TIGR02658       242 ADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKI-ELGHEIDSINVSQDAKPLLYAL  317 (352)
T ss_pred             ccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEE-eCCCceeeEEECCCCCeEEEEe
Confidence              123545   99999999999953          113 9999976542   21111 1233588999999998 44444


Q ss_pred             e
Q 017520          281 I  281 (370)
Q Consensus       281 ~  281 (370)
                      +
T Consensus       318 n  318 (352)
T TIGR02658       318 S  318 (352)
T ss_pred             C
Confidence            4

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.16  E-value=0.00024  Score=68.14  Aligned_cols=107  Identities=21%  Similarity=0.299  Sum_probs=70.8

Q ss_pred             cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--------cCCCCccceEEccC--
Q 017520          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--------DGFYFANGVALSRD--  229 (370)
Q Consensus       160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--------~~~~~p~gi~~~~d--  229 (370)
                      +..|.+|++.+||++||+..                 ..|+|+++++.++..+.+.        .+.....||+++||  
T Consensus        29 L~~Pw~maflPDG~llVtER-----------------~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~   91 (454)
T TIGR03606        29 LNKPWALLWGPDNQLWVTER-----------------ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFM   91 (454)
T ss_pred             CCCceEEEEcCCCeEEEEEe-----------------cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCcc
Confidence            46899999999999999964                 2488999987655433221        12345578999876  


Q ss_pred             ----CCEEEEEeC----------Cc-EEEEEeCCC--CCCceeeeccCCCC----CCCceeECCCCCEEEEEecC
Q 017520          230 ----EDYVVVCES----------WK-CRKYWLKGE--RKGKLETFAENLPG----APDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 ----g~~l~v~~~----------~~-l~~~~~~~~--~~~~~~~~~~~~~g----~p~~i~~d~~G~lwv~~~~~  283 (370)
                          ++++|++.+          .. |.||.++..  .....+.+....|.    .-..|++++||.|||++...
T Consensus        92 ~~~~n~~lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606        92 QEKGNPYVYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             ccCCCcEEEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                357999851          22 888887532  23333333333332    12348899999999998765

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.15  E-value=0.0035  Score=60.83  Aligned_cols=131  Identities=16%  Similarity=0.149  Sum_probs=79.8

Q ss_pred             ceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520          122 GLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       122 gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      +.++++||+ |+.+...   ..|+.++ .+| .+.+.. ..+    ......+++||+ |+++.+.              
T Consensus       208 ~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~-~~g----~~~~~~~SpDG~~l~~~~s~--------------  268 (433)
T PRK04922        208 SPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVAS-FRG----INGAPSFSPDGRRLALTLSR--------------  268 (433)
T ss_pred             cccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEecc-CCC----CccCceECCCCCEEEEEEeC--------------
Confidence            778889996 5444432   2488888 556 444432 122    223568999995 6665321              


Q ss_pred             cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINL  270 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  270 (370)
                       .....|+.+|.++++.+.+..........++++||+.++++.. .+   |+++++++..   .+.+. ..........+
T Consensus       269 -~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt-~~g~~~~~~~~  343 (433)
T PRK04922        269 -DGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---AERLT-FQGNYNARASV  343 (433)
T ss_pred             -CCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---eEEee-cCCCCccCEEE
Confidence             1234799999988887765544333456799999998776643 32   8888876542   22222 11223345788


Q ss_pred             CCCCCE
Q 017520          271 APDGTF  276 (370)
Q Consensus       271 d~~G~l  276 (370)
                      ++||+.
T Consensus       344 SpDG~~  349 (433)
T PRK04922        344 SPDGKK  349 (433)
T ss_pred             CCCCCE
Confidence            888863

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.12  E-value=0.0049  Score=59.67  Aligned_cols=152  Identities=11%  Similarity=0.060  Sum_probs=85.1

Q ss_pred             eEEEEe-CCeE-EEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520          100 WIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       100 ~I~~~~-~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      +|+.++ +|.. +.+........ ..+++|||+ |+.+....   .|+.++ .+| .+.+.. ..+    .....+++||
T Consensus       177 ~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~-~~g----~~~~~~~SPD  250 (427)
T PRK02889        177 QLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN-FKG----SNSAPAWSPD  250 (427)
T ss_pred             EEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            455555 4432 22222223334 788999996 44443322   388888 566 444432 122    2346789999


Q ss_pred             Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL  246 (370)
Q Consensus       172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~  246 (370)
                      |+ |+++...               .....||.+|.+++..+.+...........+++||+.++++.. .+   |++++.
T Consensus       251 G~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~  315 (427)
T PRK02889        251 GRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPA  315 (427)
T ss_pred             CCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEEC
Confidence            95 6665321               1335799999887766655433223345789999998776543 33   788876


Q ss_pred             CCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          247 KGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      ++..   .+.... .........+++||+.
T Consensus       316 ~~g~---~~~lt~-~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        316 SGGA---AQRVTF-TGSYNTSPRISPDGKL  341 (427)
T ss_pred             CCCc---eEEEec-CCCCcCceEECCCCCE
Confidence            6532   222221 1122334678888863

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.11  E-value=2.3e-05  Score=57.03  Aligned_cols=81  Identities=33%  Similarity=0.450  Sum_probs=54.7

Q ss_pred             cceEEcCCCcEEEEeCCCCCC-CccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--
Q 017520          164 NDVVEASDGSLYFTVSSSKYL-PHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--  240 (370)
Q Consensus       164 ~~l~~d~~G~l~v~d~~~~~~-~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--  240 (370)
                      |+|+.-...++|+|+....-. +....+..+ ..+-+.|..||+  ++++.++.++.+||||++++|++.|||++..+  
T Consensus         1 NDIvavG~~sFy~TNDhyf~~~~l~~lE~~l-~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~   77 (86)
T PF01731_consen    1 NDIVAVGPDSFYVTNDHYFTDPFLRLLETYL-GLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLAHS   77 (86)
T ss_pred             CCEEEECcCcEEEECchhhCcHHHHHHHHHh-cCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccCCe
Confidence            355444456788886531100 111112222 234567888998  46778899999999999999999999999876  


Q ss_pred             EEEEEeC
Q 017520          241 CRKYWLK  247 (370)
Q Consensus       241 l~~~~~~  247 (370)
                      |.+|..+
T Consensus        78 I~vy~~~   84 (86)
T PF01731_consen   78 IHVYKRH   84 (86)
T ss_pred             EEEEEec
Confidence            8888643

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.10  E-value=0.00084  Score=66.09  Aligned_cols=146  Identities=14%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--C-CeEEEEEecCCCceeceEEcCCCcEEEEeCCC--ceEEEc-CCC-eEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--D-GTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--GLHKVS-EDG-VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~-g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~--gi~~~~-~~g-~~~~  151 (370)
                      +-..+.+...|+..+.. -||.|..||  . ..++++..+......++++|+.|.|.++....  .|+.++ ++| +..+
T Consensus       394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDi  473 (893)
T KOG0291|consen  394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDI  473 (893)
T ss_pred             ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence            44456666666655444 788888888  2 24666654443333389999999988875443  577777 788 3322


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEecCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      .   .|.. .-+..+.++++|.+.++-+                 .+.+|..||.  ..++++.+. --...-++++.||
T Consensus       474 L---sGHE-gPVs~l~f~~~~~~LaS~S-----------------WDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd  531 (893)
T KOG0291|consen  474 L---SGHE-GPVSGLSFSPDGSLLASGS-----------------WDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD  531 (893)
T ss_pred             h---cCCC-CcceeeEEccccCeEEecc-----------------ccceEEEEEeeccCceeeeEe-eccceeEEEEcCC
Confidence            2   2221 2467889999999777754                 2345655553  334555442 2234568899999


Q ss_pred             CCEEEEEeCCc-EEEEEeC
Q 017520          230 EDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~  247 (370)
                      |+.+-|+...+ |..||.+
T Consensus       532 G~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  532 GKELAVATLDGQITFFDIK  550 (893)
T ss_pred             CCeEEEEEecceEEEEEhh
Confidence            99999999988 8878764

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.08  E-value=0.0038  Score=61.53  Aligned_cols=250  Identities=12%  Similarity=0.023  Sum_probs=126.1

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCC------ceeceEEcCCCcEEEEeC---------CCceEEEc-CCC-eE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------TLVGLTSTKEGHLIICDN---------ANGLHKVS-EDG-VE  149 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~------p~~gl~~d~~G~L~v~~~---------~~gi~~~~-~~g-~~  149 (370)
                      ++.+|+++.+|.|+.+|  +|+..........      ...+..+. ++.+|++..         ...++.+| .+| ..
T Consensus       110 ~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         110 PRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            38999999999999999  7876544332221      11134444 477888752         24588899 678 33


Q ss_pred             EEEeecCCc----cc-------------ccccceEEcC-CCcEEEEeCCCC-CCCccceecccccCCCceEEEEeCCCCe
Q 017520          150 NFLSYVNGS----KL-------------RFANDVVEAS-DGSLYFTVSSSK-YLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       150 ~~~~~~~g~----~~-------------~~~~~l~~d~-~G~l~v~d~~~~-~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                      .-.......    +.             ......++|+ +|.+|+...... +...... ........+.|+.+|.++++
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~-~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRR-TPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCcc-CCCCCCceeeEEEEcCCCCC
Confidence            322211100    00             0112357775 578999865311 0000000 00011224589999999887


Q ss_pred             EEEEecCC-------CCccceEEc----cCCC---EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          211 TTLVADGF-------YFANGVALS----RDED---YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       211 ~~~~~~~~-------~~p~gi~~~----~dg~---~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      ..-.....       ..+....+.    .+|+   .+|+....+ ++.+|.++.+.    .+.....  -.++..++ +.
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~----~W~~~~~--~~~~~~~~-~~  340 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL----ISARPEV--EQPMAYDP-GL  340 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE----eeEeEee--ccccccCC-ce
Confidence            65432211       111111221    2343   466666666 99999765421    1110100  12244444 77


Q ss_pred             EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCc------cccceeEE
Q 017520          276 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQL------MSFVTSGL  348 (370)
Q Consensus       276 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~------~~~~t~~~  348 (370)
                      +|++........                 +..-.........|.+..+| .+|++++.+.......      ....+...
T Consensus       341 vyv~~~~~~~~~-----------------~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~  403 (488)
T cd00216         341 VYLGAFHIPLGL-----------------PPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA  403 (488)
T ss_pred             EEEccccccccC-----------------cccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE
Confidence            888753210000                 00000000133468899999 5799999886542110      01123445


Q ss_pred             EECCEEEEEeCCCCeE
Q 017520          349 QVDNHLYVISLTSNFI  364 (370)
Q Consensus       349 ~~~g~L~~gs~~~~~i  364 (370)
                      ..++.||+++..+...
T Consensus       404 ~~g~~v~~g~~dG~l~  419 (488)
T cd00216         404 TAGNLVFAGAADGYFR  419 (488)
T ss_pred             ecCCeEEEECCCCeEE
Confidence            5678899988665433

The alignment model contains an 8-bladed beta-propeller.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=98.08  E-value=6.4e-05  Score=70.06  Aligned_cols=129  Identities=19%  Similarity=0.265  Sum_probs=78.8

Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEe-------cCCCCccceEEccC---
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVA-------DGFYFANGVALSRD---  229 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~-------~~~~~p~gi~~~~d---  229 (370)
                      +.|..|++.|||++||++.                  .|+|++++.+ +.. ..+.       .+.....|++++++   
T Consensus         2 ~~P~~~a~~pdG~l~v~e~------------------~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~   62 (331)
T PF07995_consen    2 NNPRSMAFLPDGRLLVAER------------------SGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFAS   62 (331)
T ss_dssp             SSEEEEEEETTSCEEEEET------------------TTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCC
T ss_pred             CCceEEEEeCCCcEEEEeC------------------CceEEEEeCC-CcCcceecccccccccccCCcccceeccccCC
Confidence            4678999999999999964                  4899999954 433 3222       12344578999984   


Q ss_pred             CCEEEEEeCC----------cEEEEEeCCC--CCCceeeeccCCCC------CCCceeECCCCCEEEEEecCchhHHHhh
Q 017520          230 EDYVVVCESW----------KCRKYWLKGE--RKGKLETFAENLPG------APDNINLAPDGTFWIAIIKLDARRMKIL  291 (370)
Q Consensus       230 g~~l~v~~~~----------~l~~~~~~~~--~~~~~~~~~~~~~g------~p~~i~~d~~G~lwv~~~~~~~~~~~~~  291 (370)
                      +..+|+..+.          .|.||..+..  .....+.+....+.      ....|++++||.||++.....+.   -.
T Consensus        63 n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~---~~  139 (331)
T PF07995_consen   63 NGYLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGND---DN  139 (331)
T ss_dssp             C-EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTG---GG
T ss_pred             CCEEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCc---cc
Confidence            4568888772          1888877654  22233333222221      12348999999999998765320   00


Q ss_pred             hcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE
Q 017520          292 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI  329 (370)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~  329 (370)
                      ..                  ......|.|++++++|++
T Consensus       140 ~~------------------~~~~~~G~ilri~~dG~~  159 (331)
T PF07995_consen  140 AQ------------------DPNSLRGKILRIDPDGSI  159 (331)
T ss_dssp             GC------------------STTSSTTEEEEEETTSSB
T ss_pred             cc------------------ccccccceEEEecccCcC
Confidence            00                  014446889999999874

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.07  E-value=0.0024  Score=62.32  Aligned_cols=151  Identities=15%  Similarity=0.238  Sum_probs=104.4

Q ss_pred             CCcCCCcceEEcCCCcEE-EEecCCeEEEEe---CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC-
Q 017520           76 GSVNHPEDASMDKNGVIY-TATRDGWIKRLQ---DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~-v~~~~g~I~~~~---~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g-  147 (370)
                      +....-.++++.++|... .++.|+.|..|+   ++. .+++.......+ +++|.++|++++.....+.+++.  ++| 
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            334456778888999644 444788888888   334 455555566677 99999999888876665655554  566 


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE--EEecCCCCc---
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFA---  221 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~p---  221 (370)
                       .+.+...     ...+..+++.++|++.++.+                 .++.|..||..++...  ....+...+   
T Consensus       280 ~~~~l~~h-----s~~is~~~f~~d~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~  337 (456)
T KOG0266|consen  280 CVRKLKGH-----SDGISGLAFSPDGNLLVSAS-----------------YDGTIRVWDLETGSKLCLKLLSGAENSAPV  337 (456)
T ss_pred             EEEeeecc-----CCceEEEEECCCCCEEEEcC-----------------CCccEEEEECCCCceeeeecccCCCCCCce
Confidence             4444322     13577889999998777753                 3578999999988832  233333344   


Q ss_pred             cceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          222 NGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      .-+.+++++++++....++ +..|++...
T Consensus       338 ~~~~fsp~~~~ll~~~~d~~~~~w~l~~~  366 (456)
T KOG0266|consen  338 TSVQFSPNGKYLLSASLDRTLKLWDLRSG  366 (456)
T ss_pred             eEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence            6788999999888888887 777777643

>PRK13684 Ycf48-like protein; Provisional

Probab=98.07  E-value=0.0036  Score=58.47  Aligned_cols=221  Identities=10%  Similarity=0.101  Sum_probs=118.5

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEe---cCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~  155 (370)
                      +|+++. +..|++...|.|++-.| | +++....   ..+.+. .+....++.+|++...++|++-+..|  ++.+....
T Consensus        94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~g~~G~i~~S~DgG~tW~~~~~~~  171 (334)
T PRK13684         94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTAEMATNVGAIYRTTDGGKNWEALVEDA  171 (334)
T ss_pred             eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcceeeeccceEEEECCCCCCceeCcCCC
Confidence            455553 34676666677877763 3 3554421   223455 55444456677776555677766555  55443222


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCCCCeEEEEec-CCCCccceEEccCCCEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPSSNITTLVAD-GFYFANGVALSRDEDYV  233 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l  233 (370)
                          ...+++++++++|.+++...                  .|.+++- |..+..++.+.. .....+++++.++++ +
T Consensus       172 ----~g~~~~i~~~~~g~~v~~g~------------------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~  228 (334)
T PRK13684        172 ----AGVVRNLRRSPDGKYVAVSS------------------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGN-L  228 (334)
T ss_pred             ----cceEEEEEECCCCeEEEEeC------------------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCC-E
Confidence                23677888888887665532                  3566664 232233444332 234557888888888 5


Q ss_pred             EEEeCCcEEEE-EeCCCCCCceeeeccC-C-C-CCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccc
Q 017520          234 VVCESWKCRKY-WLKGERKGKLETFAEN-L-P-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  309 (370)
Q Consensus       234 ~v~~~~~l~~~-~~~~~~~~~~~~~~~~-~-~-g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (370)
                      |+....+..++ ..++..  +.+..... . . .....+++.+++++|++...+                          
T Consensus       229 ~~vg~~G~~~~~s~d~G~--sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G--------------------------  280 (334)
T PRK13684        229 WMLARGGQIRFNDPDDLE--SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG--------------------------  280 (334)
T ss_pred             EEEecCCEEEEccCCCCC--ccccccCCccccccceeeEEEcCCCCEEEEcCCC--------------------------
Confidence            55555564444 233221  11111100 0 0 012346677788999986554                          


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEE
Q 017520          310 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIG  365 (370)
Q Consensus       310 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~  365 (370)
                               .++.-...|+..+......+........+...++++|+.+..+.-+.
T Consensus       281 ---------~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~  327 (334)
T PRK13684        281 ---------TLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR  327 (334)
T ss_pred             ---------eEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence                     35544455666665443334322233333344688999888776554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=98.06  E-value=0.0024  Score=60.27  Aligned_cols=176  Identities=13%  Similarity=0.119  Sum_probs=96.6

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CC-eE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEEEeecCC
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSYVNG  157 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~~~~~~g  157 (370)
                      .-++++.++|.+.+|+++|.|+.|+ ++ ++ +......+... ++..-.+|.|.-+..+..|..++.+ .+.+.+..-.
T Consensus       249 Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~-~L~~lr~GtllSGgKDRki~~Wd~~-y~k~r~~elP  326 (626)
T KOG2106|consen  249 VLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVF-SLCMLRDGTLLSGGKDRKIILWDDN-YRKLRETELP  326 (626)
T ss_pred             EEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceE-EEEEecCccEeecCccceEEecccc-ccccccccCc
Confidence            3468888999999999999999999 33 22 22224455677 7888889999875544556666622 1111111011


Q ss_pred             cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      ..+..+..++... +.|||+++.                  +.|+.=+.+.+-..........-=|++..++.+.+.-+.
T Consensus       327 e~~G~iRtv~e~~-~di~vGTtr------------------N~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g  387 (626)
T KOG2106|consen  327 EQFGPIRTVAEGK-GDILVGTTR------------------NFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG  387 (626)
T ss_pred             hhcCCeeEEecCC-CcEEEeecc------------------ceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc
Confidence            2234566666543 349999764                  334443333222222222222445788888887455555


Q ss_pred             CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          238 SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       238 ~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ..+ +..++  +.+..-.+.+.+  |  ..-..+++.|.+-+|+..+
T Consensus       388 qdk~v~lW~--~~k~~wt~~~~d--~--~~~~~fhpsg~va~Gt~~G  428 (626)
T KOG2106|consen  388 QDKHVRLWN--DHKLEWTKIIED--P--AECADFHPSGVVAVGTATG  428 (626)
T ss_pred             CcceEEEcc--CCceeEEEEecC--c--eeEeeccCcceEEEeeccc
Confidence            555 44443  222221222221  1  1234566677677776665

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=0.002  Score=57.27  Aligned_cols=155  Identities=10%  Similarity=0.067  Sum_probs=101.2

Q ss_pred             ecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-C--
Q 017520           73 VGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-E--  145 (370)
Q Consensus        73 ~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~--  145 (370)
                      ...|.-..-.+|.+.+-++.+++. .|..|..||  ..+-..+....++|.  .|+||+|-+++..... .|..+| +  
T Consensus        95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecCCCeEEEEEeccc
Confidence            334444445677777766777665 677788888  233333334455554  8999999988876554 566677 3  


Q ss_pred             -CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec----CC
Q 017520          146 -DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD----GF  218 (370)
Q Consensus       146 -~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~----~~  218 (370)
                       .| ++.+.-..  ......++|.+++||+ |.+++.                  .+.++.+|.=+|.+..-..    ..
T Consensus       173 dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~------------------~s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  173 DKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTN------------------ASFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             CCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeC------------------CCcEEEEEccCCcEeeeEeeccCCC
Confidence             35 66553221  2245678999999996 666654                  3567778765565433222    23


Q ss_pred             CCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ..|-..+++||+++++.+...+ |..|+++.+
T Consensus       233 ~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg  264 (311)
T KOG1446|consen  233 NLPLSATFTPDSKFVLSGSDDGTIHVWNLETG  264 (311)
T ss_pred             CcceeEEECCCCcEEEEecCCCcEEEEEcCCC
Confidence            3455778999999888888877 988988654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.00  E-value=0.011  Score=56.81  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=89.6

Q ss_pred             eEEEEe-CC-eEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520          100 WIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       100 ~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .|+..+ +| ..+.+........ ..++++||+ |+.+...   ..|+.++ .+| .+.+.. ..+    ....+++++|
T Consensus       171 ~l~~~d~~g~~~~~l~~~~~~~~-~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~~~----~~~~~~~spD  244 (417)
T TIGR02800       171 ELQVADYDGANPQTITRSREPIL-SPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-FPG----MNGAPAFSPD  244 (417)
T ss_pred             eEEEEcCCCCCCEEeecCCCcee-cccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-CCC----CccceEECCC
Confidence            466666 44 3444443333345 778889997 4333322   2477777 566 444322 122    2345788999


Q ss_pred             Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL  246 (370)
Q Consensus       172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~  246 (370)
                      |+ |+++...               .....|+.+|.+++..+.+...........+++||+.++++.. .+   |+++++
T Consensus       245 g~~l~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~  309 (417)
T TIGR02800       245 GSKLAVSLSK---------------DGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDA  309 (417)
T ss_pred             CCEEEEEECC---------------CCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            95 7666431               1234699999987776655443333345688999997766543 33   888887


Q ss_pred             CCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          247 KGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ++.+   ...+. ..........++++|+..+.+
T Consensus       310 ~~~~---~~~l~-~~~~~~~~~~~spdg~~i~~~  339 (417)
T TIGR02800       310 DGGE---VRRLT-FRGGYNASPSWSPDGDLIAFV  339 (417)
T ss_pred             CCCC---EEEee-cCCCCccCeEECCCCCEEEEE
Confidence            6542   22222 112234456788888644443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.00  E-value=0.0011  Score=59.51  Aligned_cols=188  Identities=20%  Similarity=0.203  Sum_probs=116.6

Q ss_pred             cCCCcceEEcCCCcEEEEecCCeEEEE---e----CCeE-----EEEEe------cCCCceeceEEcCCCcEEEEeCC-C
Q 017520           78 VNHPEDASMDKNGVIYTATRDGWIKRL---Q----DGTW-----VNWKF------IDSQTLVGLTSTKEGHLIICDNA-N  138 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~---~----~g~~-----~~~~~------~~~~p~~gl~~d~~G~L~v~~~~-~  138 (370)
                      +..|=+++.++ ..||+++.. +|+++   +    .++.     .-|.+      ..-..+ .|++ .++.+|+.+.. +
T Consensus        48 F~r~MGl~~~~-~~l~~~t~~-qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiH-dia~-~~~~l~fVNT~fS  123 (335)
T TIGR03032        48 FPRPMGLAVSP-QSLTLGTRY-QLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAH-DLAL-GAGRLLFVNTLFS  123 (335)
T ss_pred             cCccceeeeeC-CeEEEEEcc-eeEEcccccccccccccCCCCCeEEeeeeeeeccCcchh-heee-cCCcEEEEECcce
Confidence            56788888865 479999964 59998   3    1110     11111      112356 7888 57788887765 3


Q ss_pred             ceEEEcCCC-eEEE-----EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          139 GLHKVSEDG-VENF-----LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       139 gi~~~~~~g-~~~~-----~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      =+..++++- +...     ++.....--=+.|+||.....--|+|.-+..-..    ....+...+|++. +|..+++  
T Consensus       124 CLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~g~p~yVTa~~~sD~~----~gWR~~~~~gG~v-idv~s~e--  196 (335)
T TIGR03032       124 CLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDDGEPRYVTALSQSDVA----DGWREGRRDGGCV-IDIPSGE--  196 (335)
T ss_pred             eEEEECCCCccccccCCccccccCccCceeecceeeeCCeEEEEEEeeccCCc----ccccccccCCeEE-EEeCCCC--
Confidence            466666543 3322     2221111113688999965445788754321111    1122333455554 7777664  


Q ss_pred             EEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCc
Q 017520          213 LVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLD  284 (370)
Q Consensus       213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~  284 (370)
                      ++.+++..|.+.-+. ||+ ||+++.+.  +.++|.++   |+.+.+. ..||+|.|+.+.  |+ ++|++...|
T Consensus       197 vl~~GLsmPhSPRWh-dgr-LwvldsgtGev~~vD~~~---G~~e~Va-~vpG~~rGL~f~--G~llvVgmSk~R  263 (335)
T TIGR03032       197 VVASGLSMPHSPRWY-QGK-LWLLNSGRGELGYVDPQA---GKFQPVA-FLPGFTRGLAFA--GDFAFVGLSKLR  263 (335)
T ss_pred             EEEcCccCCcCCcEe-CCe-EEEEECCCCEEEEEcCCC---CcEEEEE-ECCCCCccccee--CCEEEEEecccc
Confidence            567899999998887 455 99999877  99999653   3566654 688999999998  65 668877766

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=98.00  E-value=0.00027  Score=62.84  Aligned_cols=151  Identities=17%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             CCCcCCCcceEEcCCCcEE-EEecCCeEEEEe--CCeEEEEE---------ecCCCceeceEEcCCCcEEEEeCCCceEE
Q 017520           75 EGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNWK---------FIDSQTLVGLTSTKEGHLIICDNANGLHK  142 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~~~~---------~~~~~p~~gl~~d~~G~L~v~~~~~gi~~  142 (370)
                      -|.-..+|+..+.+||.-. .|+.+|-|-.|+  +|++++-.         -...... +|.|++|..+.......|-.+
T Consensus       210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl-ci~FSRDsEMlAsGsqDGkIK  288 (508)
T KOG0275|consen  210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL-CISFSRDSEMLASGSQDGKIK  288 (508)
T ss_pred             cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceE-EEeecccHHHhhccCcCCcEE
Confidence            3445689999999999644 556899898998  78755321         1223355 888988887777655555444


Q ss_pred             Ec--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe-CCCCeEE-EEec
Q 017520          143 VS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITT-LVAD  216 (370)
Q Consensus       143 ~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~t~~~~-~~~~  216 (370)
                      +.  .+|  ++.+..    .....+..+.++.|+.-..+.+                 . ....|+. .++|+.- .+..
T Consensus       289 vWri~tG~ClRrFdr----AHtkGvt~l~FSrD~SqiLS~s-----------------f-D~tvRiHGlKSGK~LKEfrG  346 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDR----AHTKGVTCLSFSRDNSQILSAS-----------------F-DQTVRIHGLKSGKCLKEFRG  346 (508)
T ss_pred             EEEEecchHHHHhhh----hhccCeeEEEEccCcchhhccc-----------------c-cceEEEeccccchhHHHhcC
Confidence            43  455  443311    1123566788888875334432                 1 2233333 3444432 2233


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ...+.|...+++||..++-+.+.+ |.+|+.++
T Consensus       347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Kt  379 (508)
T KOG0275|consen  347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKT  379 (508)
T ss_pred             ccccccceEEcCCCCeEEEecCCccEEEecCcc
Confidence            445778899999999998888888 77777543

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.98  E-value=0.0051  Score=54.65  Aligned_cols=190  Identities=14%  Similarity=0.157  Sum_probs=106.9

Q ss_pred             CCcCCCcceEEcCCC-cEEEEe-cCCeEEEEe-CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEc--CCC
Q 017520           76 GSVNHPEDASMDKNG-VIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G-~l~v~~-~~g~I~~~~-~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~--~~g  147 (370)
                      |...+-.+++.+++. .||..+ ..-.|..++ +|.+..-.+-  ...|- +|..-.+|..-+++.. +.++.+.  +++
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE-~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPE-TIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChh-HeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            334457789999755 566544 455688888 7875433221  23466 7777666666666655 3444444  443


Q ss_pred             -eEEEEe-e--c--CCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC---
Q 017520          148 -VENFLS-Y--V--NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---  217 (370)
Q Consensus       148 -~~~~~~-~--~--~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---  217 (370)
                       +..... .  .  .........+++.|+.+ ++||+-..                .--+|+.++........-...   
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr----------------~P~~I~~~~~~~~~l~~~~~~~~~  225 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER----------------NPIGIFEVTQSPSSLSVHASLDPT  225 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc----------------CCcEEEEEecCCcccccccccCcc
Confidence             221111 1  1  11123456789999865 79988542                223577776432222111100   


Q ss_pred             ------CCCccceEEccCCCEEEEEe-CCc-EEEEEeCCCCCCceee------eccCCCCCCCceeECCCCCEEEEEecC
Q 017520          218 ------FYFANGVALSRDEDYVVVCE-SWK-CRKYWLKGERKGKLET------FAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       218 ------~~~p~gi~~~~dg~~l~v~~-~~~-l~~~~~~~~~~~~~~~------~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                            +....|+.+++..+.++|-. ..+ |..++.+|...+....      +....| .+.|++.|.+|++||....+
T Consensus       226 ~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dip-qaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         226 ADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIP-QAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             cccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCC-CcceeEECCCCCEEEEecCC
Confidence                  12346788887655565554 444 8889888763222111      111122 47899999999999998665

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=97.93  E-value=0.016  Score=55.08  Aligned_cols=182  Identities=15%  Similarity=0.166  Sum_probs=104.8

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEE-EEE---ecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--e
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWV-NWK---FIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--V  148 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~-~~~---~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~  148 (370)
                      .-.++-+.+||..+++. .||+|+.||  +|+.. .+.   ...|..+ ++...||+.=++ +..+.-+..++ .++  .
T Consensus       192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIf-alsWsPDs~~~~T~SaDkt~KIWdVs~~slv  270 (603)
T KOG0318|consen  192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIF-ALSWSPDSTQFLTVSADKTIKIWDVSTNSLV  270 (603)
T ss_pred             ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEE-EEEECCCCceEEEecCCceEEEEEeeccceE
Confidence            35678888999999776 899999999  67543 332   2345677 888888886444 33333333333 222  2


Q ss_pred             EEEEee--cCCc------------------------------------ccccccceEEcCCCcEEEEeCCCCCCCcccee
Q 017520          149 ENFLSY--VNGS------------------------------------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCL  190 (370)
Q Consensus       149 ~~~~~~--~~g~------------------------------------~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~  190 (370)
                      +.+...  ....                                    ....+..+++.+||.-.++-            
T Consensus       271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg------------  338 (603)
T KOG0318|consen  271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG------------  338 (603)
T ss_pred             EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee------------
Confidence            222100  0000                                    01234445566665433332            


Q ss_pred             cccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCc
Q 017520          191 DILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDN  267 (370)
Q Consensus       191 ~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~  267 (370)
                           .-+|.|..++..++....+...  -....+++.+..+. ++...... |.++++.+......+.+  .++..|.+
T Consensus       339 -----syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~--~lg~QP~~  410 (603)
T KOG0318|consen  339 -----SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVV--KLGSQPKG  410 (603)
T ss_pred             -----ccCceEEEEecCCccccccccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccccee--ecCCCcee
Confidence                 2457888888876665544322  22345666665555 78888777 99998866533222222  34456889


Q ss_pred             eeECCCCCEEEEEec
Q 017520          268 INLAPDGTFWIAIIK  282 (370)
Q Consensus       268 i~~d~~G~lwv~~~~  282 (370)
                      ++..++|.+-+....
T Consensus       411 lav~~d~~~avv~~~  425 (603)
T KOG0318|consen  411 LAVLSDGGTAVVACI  425 (603)
T ss_pred             EEEcCCCCEEEEEec
Confidence            999999865554433

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.014  Score=56.39  Aligned_cols=171  Identities=15%  Similarity=0.112  Sum_probs=95.3

Q ss_pred             EEcCCCc----EEEEec--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEE--Ec-CC---
Q 017520           85 SMDKNGV----IYTATR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHK--VS-ED---  146 (370)
Q Consensus        85 ~~d~~G~----l~v~~~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~--~~-~~---  146 (370)
                      .+.+||.    +|+...  ...|+..+  +|+.+.+....+... ..+++|||+ |......   ..++.  ++ +.   
T Consensus       191 ~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~  269 (428)
T PRK01029        191 TWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQL-MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAI  269 (428)
T ss_pred             eEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCcc-ceEECCCCCEEEEEECCCCCcceeEEEeecccCCC
Confidence            6778874    345553  34688888  566666555555555 788999995 4433321   13444  33 22   


Q ss_pred             C-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC--CCeEEEEecCCCCcc
Q 017520          147 G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNITTLVADGFYFAN  222 (370)
Q Consensus       147 g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--t~~~~~~~~~~~~p~  222 (370)
                      | .+.+.....    ......+++|||+ |+++...               .....||+++.+  ++..+.+........
T Consensus       270 g~~~~lt~~~~----~~~~~p~wSPDG~~Laf~s~~---------------~g~~~ly~~~~~~~g~~~~~lt~~~~~~~  330 (428)
T PRK01029        270 GKPRRLLNEAF----GTQGNPSFSPDGTRLVFVSNK---------------DGRPRIYIMQIDPEGQSPRLLTKKYRNSS  330 (428)
T ss_pred             CcceEeecCCC----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECcccccceEEeccCCCCcc
Confidence            3 333322111    1223568999996 6665321               122468888754  233343333323345


Q ss_pred             ceEEccCCCEEEEEeCC-c---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEE
Q 017520          223 GVALSRDEDYVVVCESW-K---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIA  279 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~-~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~  279 (370)
                      ...++|||+.++++... +   |+++++++.   +.+.+... +....+...++||+ |++.
T Consensus       331 ~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g---~~~~Lt~~-~~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        331 CPAWSPDGKKIAFCSVIKGVRQICVYDLATG---RDYQLTTS-PENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ceeECCCCCEEEEEEcCCCCcEEEEEECCCC---CeEEccCC-CCCccceEECCCCCEEEEE
Confidence            67899999988776543 2   899998764   23333322 22345677888886 4433

>PRK00178 tolB translocation protein TolB; Provisional

Probab=97.92  E-value=0.015  Score=56.31  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=85.8

Q ss_pred             EEEEe-CCe-EEEEEecCCCceeceEEcCCCc-E-EEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC
Q 017520          101 IKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-L-IICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG  172 (370)
Q Consensus       101 I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L-~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G  172 (370)
                      |+..+ +|. .+.+........ ...+++||+ | |+....  ..|+.++ .+| .+.+.. ..+    .....+++|||
T Consensus       181 l~~~d~~g~~~~~l~~~~~~~~-~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~-~~g----~~~~~~~SpDG  254 (430)
T PRK00178        181 LQRSDYDGARAVTLLQSREPIL-SPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN-FEG----LNGAPAWSPDG  254 (430)
T ss_pred             EEEECCCCCCceEEecCCCcee-eeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-CCC----CcCCeEECCCC
Confidence            44445 443 333333333334 778899996 4 443322  2488888 556 544422 122    22357889999


Q ss_pred             c-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEeC
Q 017520          173 S-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWLK  247 (370)
Q Consensus       173 ~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~  247 (370)
                      + |+++...               .....||++|.++++.+.+...........+++||+.++++.. .+   |++++++
T Consensus       255 ~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~  319 (430)
T PRK00178        255 SKLAFVLSK---------------DGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVN  319 (430)
T ss_pred             CEEEEEEcc---------------CCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECC
Confidence            5 6665321               1234799999998887765544334456789999998776643 32   8888876


Q ss_pred             CCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          248 GERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       248 ~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      +.+   .+.+.. .........+++||+.
T Consensus       320 ~g~---~~~lt~-~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        320 GGR---AERVTF-VGNYNARPRLSADGKT  344 (430)
T ss_pred             CCC---EEEeec-CCCCccceEECCCCCE
Confidence            542   222221 1112234567888863

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.88  E-value=0.013  Score=53.51  Aligned_cols=179  Identities=18%  Similarity=0.209  Sum_probs=86.9

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEecCCC----ceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEE
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKFIDSQ----TLVGLTSTKEGHLIICDNANGLHKVSEDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~~~~~----p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~  151 (370)
                      ...+|++..+.+-|+....|.|++-.| | +++........    .+..+.++ +.+.||+.....+++-...|  .+.+
T Consensus        18 ~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v   96 (302)
T PF14870_consen   18 PLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD-GNEGWIVGEPGLLLHTTDGGKTWERV   96 (302)
T ss_dssp             -EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEEEEEEE-TTEEEEEEETTEEEEESSTTSS-EE-
T ss_pred             ceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEEEEEec-CCceEEEcCCceEEEecCCCCCcEEe
Confidence            567788887677777666788888773 3 35544322221    12156665 35677765443344444445  5543


Q ss_pred             E--eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEcc
Q 017520          152 L--SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSR  228 (370)
Q Consensus       152 ~--~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~  228 (370)
                      .  ...++    .+..+....++.+++...                  .|.||+-.-....++.+... ....+.+..++
T Consensus        97 ~l~~~lpg----s~~~i~~l~~~~~~l~~~------------------~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~  154 (302)
T PF14870_consen   97 PLSSKLPG----SPFGITALGDGSAELAGD------------------RGAIYRTTDGGKTWQAVVSETSGSINDITRSS  154 (302)
T ss_dssp             ---TT-SS-----EEEEEEEETTEEEEEET------------------T--EEEESSTTSSEEEEE-S----EEEEEE-T
T ss_pred             ecCCCCCC----CeeEEEEcCCCcEEEEcC------------------CCcEEEeCCCCCCeeEcccCCcceeEeEEECC
Confidence            2  12233    333444444555555432                  26677766554555554332 23345567788


Q ss_pred             CCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          229 DEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       229 dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||+.+.|+..+++++-+-.+.  ...+...........++.++++|++|+...++
T Consensus       155 dG~~vavs~~G~~~~s~~~G~--~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg  207 (302)
T PF14870_consen  155 DGRYVAVSSRGNFYSSWDPGQ--TTWQPHNRNSSRRIQSMGFSPDGNLWMLARGG  207 (302)
T ss_dssp             TS-EEEEETTSSEEEEE-TT---SS-EEEE--SSS-EEEEEE-TTS-EEEEETTT
T ss_pred             CCcEEEEECcccEEEEecCCC--ccceEEccCccceehhceecCCCCEEEEeCCc
Confidence            999777777666655442332  12233322223345678899999999998765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.87  E-value=0.012  Score=52.23  Aligned_cols=190  Identities=14%  Similarity=0.160  Sum_probs=110.3

Q ss_pred             ceEEcCCCcEEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccC
Q 017520          122 GLTSTKEGHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      |+.+..+|.||.++...   .|.+++ ++| +...... +.  ..+-.++++- +++||.-+.                 
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~--~~FgEGit~~-~d~l~qLTW-----------------  107 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PP--RYFGEGITIL-GDKLYQLTW-----------------  107 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TT--T--EEEEEEE-TTEEEEEES-----------------
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-Cc--cccceeEEEE-CCEEEEEEe-----------------
Confidence            88887789999987654   477788 677 3332221 22  1355677775 457887765                 


Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC-ceeeeccCCC-CCCCceeECCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG-KLETFAENLP-GAPDNINLAPD  273 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~~~~~~-g~p~~i~~d~~  273 (370)
                      .++..++||+++-+...-..-  ...|--+..|++.||+++-.. |+.+|+++-+.. ...+..+..| ...+-+..- +
T Consensus       108 k~~~~f~yd~~tl~~~~~~~y--~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~  184 (264)
T PF05096_consen  108 KEGTGFVYDPNTLKKIGTFPY--PGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N  184 (264)
T ss_dssp             SSSEEEEEETTTTEEEEEEE---SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred             cCCeEEEEccccceEEEEEec--CCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence            457899999986544322211  125555567888899998776 999997653221 1111111111 122334443 6


Q ss_pred             CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC--------CCCCc---c
Q 017520          274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD--------PTGQL---M  341 (370)
Q Consensus       274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~--------~~g~~---~  341 (370)
                      |.||.-.+..                                  ..|+++|+ .|+++..+.-        .+...   .
T Consensus       185 G~IyANVW~t----------------------------------d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~  230 (264)
T PF05096_consen  185 GKIYANVWQT----------------------------------DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDD  230 (264)
T ss_dssp             TEEEEEETTS----------------------------------SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TT
T ss_pred             CEEEEEeCCC----------------------------------CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccC
Confidence            8999998875                                  46999997 5888876621        11110   1


Q ss_pred             ccceeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520          342 SFVTSGLQV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       342 ~~~t~~~~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      +..-.++.+  .+++|+.+..=|.+-.++|
T Consensus       231 dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l  260 (264)
T PF05096_consen  231 DVLNGIAYDPETDRLFVTGKLWPKLYEVKL  260 (264)
T ss_dssp             S-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred             CeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence            233455553  4899999999999988875

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.84  E-value=0.0063  Score=55.03  Aligned_cols=153  Identities=11%  Similarity=0.100  Sum_probs=87.0

Q ss_pred             eEEcCCCcEEEEe------cCCeEEEEe-CC---eEEEEEecCCCceeceEEcCCC-cEEEEeCC---------------
Q 017520           84 ASMDKNGVIYTAT------RDGWIKRLQ-DG---TWVNWKFIDSQTLVGLTSTKEG-HLIICDNA---------------  137 (370)
Q Consensus        84 i~~d~~G~l~v~~------~~g~I~~~~-~g---~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~---------------  137 (370)
                      -++++||++..++      ..|.|-.++ ..   ++..|...+-.|+ -+.+.+|| +|.|++.+               
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4667788655554      457788888 43   2444544555689 99999999 78888642               


Q ss_pred             ---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          138 ---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       138 ---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                         ..+..+| .+| +.......+.....++..|+++.+|.+|++...   .-...       ....-|..+... +..+
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~---qg~~~-------~~~PLva~~~~g-~~~~  203 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQY---QGDPG-------DAPPLVALHRRG-GALR  203 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEec---CCCCC-------ccCCeEEEEcCC-Ccce
Confidence               1244444 444 221111112223457889999999999999642   11100       011224444433 2222


Q ss_pred             EEec------CC-CCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520          213 LVAD------GF-YFANGVALSRDEDYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       213 ~~~~------~~-~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~  248 (370)
                      .+.-      .+ .....|+++.+++.+.++..-+  +..||..+
T Consensus       204 ~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~t  248 (305)
T PF07433_consen  204 LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAAT  248 (305)
T ss_pred             eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCC
Confidence            2211      11 2345699999999777776544  66676544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.83  E-value=0.0013  Score=61.18  Aligned_cols=180  Identities=12%  Similarity=0.125  Sum_probs=108.2

Q ss_pred             CcceEEcCCCc-EEEEecCCeEEEEe-CCeEEEEE---ecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEE
Q 017520           81 PEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF  151 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~~g~I~~~~-~g~~~~~~---~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~  151 (370)
                      -.+|-+-+.-- +.++..+|.+..|. +|+.....   .-...|....+|.++|. ..++... .-++.+| .++ +..+
T Consensus       216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~  295 (514)
T KOG2055|consen  216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKL  295 (514)
T ss_pred             ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccc
Confidence            35566666443 45666777766666 66533221   12233443677888997 4444333 3467777 566 5544


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~  231 (370)
                      .. ..|.+..+...+.+++++++.....                 .+|-|+.+...|++...-..--....+++|++|++
T Consensus       296 ~~-~~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  296 KP-PYGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cC-CCCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecCCc
Confidence            32 2444456788889999998544433                 34678888777665432211112345788999999


Q ss_pred             EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          232 YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       232 ~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .||++...+ |+++++...+  ....|.+.-.-.-.-+|.+.+|. |+++.
T Consensus       358 ~l~~~~~~GeV~v~nl~~~~--~~~rf~D~G~v~gts~~~S~ng~-ylA~G  405 (514)
T KOG2055|consen  358 ELLASGGTGEVYVWNLRQNS--CLHRFVDDGSVHGTSLCISLNGS-YLATG  405 (514)
T ss_pred             EEEEEcCCceEEEEecCCcc--eEEEEeecCccceeeeeecCCCc-eEEec
Confidence            999998877 9999987652  23445432221233477788887 55553

>PTZ00421 coronin; Provisional

Probab=97.82  E-value=0.038  Score=54.32  Aligned_cols=146  Identities=15%  Similarity=0.128  Sum_probs=88.4

Q ss_pred             CCcceEEcC-CCc-EEEEecCCeEEEEe--CCe--------EEEEEecCCCceeceEEcCCC-cEEEEeCCCc-eEEEc-
Q 017520           80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIICDNANG-LHKVS-  144 (370)
Q Consensus        80 ~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~g-i~~~~-  144 (370)
                      .-.++++++ +++ |..++.||.|..|+  ++.        +..+........ .+++.+++ +++++....+ |..++ 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~iLaSgs~DgtVrIWDl  155 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNVLASAGADMVVNVWDV  155 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence            346788887 664 66677899999998  332        222333334556 89999875 5555443444 55555 


Q ss_pred             CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--C
Q 017520          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--F  220 (370)
Q Consensus       145 ~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~  220 (370)
                      .++  ...+    .+. ...++.+++.++|++.++.+                 .++.|..||+.+++.........  .
T Consensus       156 ~tg~~~~~l----~~h-~~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~~  213 (493)
T PTZ00421        156 ERGKAVEVI----KCH-SDQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASAK  213 (493)
T ss_pred             CCCeEEEEE----cCC-CCceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCCc
Confidence            555  3322    111 13578899999998777754                 45789999998766432222221  2


Q ss_pred             ccceEEccCCCEEEEEeC----Cc-EEEEEeCC
Q 017520          221 ANGVALSRDEDYVVVCES----WK-CRKYWLKG  248 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~----~~-l~~~~~~~  248 (370)
                      ...+.+.++++.++.+..    .+ |..||+..
T Consensus       214 ~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~  246 (493)
T PTZ00421        214 SQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRK  246 (493)
T ss_pred             ceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCC
Confidence            235667777775555432    23 88888754

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.82  E-value=0.018  Score=49.95  Aligned_cols=178  Identities=13%  Similarity=0.118  Sum_probs=106.3

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC-eEEEEe
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG-VENFLS  153 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g-~~~~~~  153 (370)
                      ..+.+.+++....+..+..|..||  .++   +..|........ .+.|..||+........|..++.  +.- .+....
T Consensus        44 NrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVt-aVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~  122 (311)
T KOG0315|consen   44 NRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVT-AVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ  122 (311)
T ss_pred             eeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceE-EEEEeecCeEEEecCCCceEEEEeccCcccchhcc
Confidence            346677777666555555677777  332   344444445566 78888888754444456777766  221 111111


Q ss_pred             ecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE--EEecCCCCccceEEccCC
Q 017520          154 YVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVADGFYFANGVALSRDE  230 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~~~~~p~gi~~~~dg  230 (370)
                      .     ..-+|.++..|+ ++|+++|.+                  |.|..+|.......  .+.........+++.+||
T Consensus       123 ~-----~spVn~vvlhpnQteLis~dqs------------------g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg  179 (311)
T KOG0315|consen  123 H-----NSPVNTVVLHPNQTELISGDQS------------------GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG  179 (311)
T ss_pred             C-----CCCcceEEecCCcceEEeecCC------------------CcEEEEEccCCccccccCCCCCcceeeEEEcCCC
Confidence            1     124688888875 578888754                  78999998655332  223344556789999999


Q ss_pred             CEEEEEeCCc-EEEEEeCCC-CCCceeeec--cCCCCCCCceeECCCCCEEEEEecC
Q 017520          231 DYVVVCESWK-CRKYWLKGE-RKGKLETFA--ENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~-~~~~~~~~~--~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ..+..++..+ ++++++-+. .....+...  ....++.--..+++|+.+.+++...
T Consensus       180 sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd  236 (311)
T KOG0315|consen  180 SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD  236 (311)
T ss_pred             cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC
Confidence            9777777666 888887543 122222221  1122333345578888777776554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.79  E-value=0.0075  Score=57.20  Aligned_cols=139  Identities=18%  Similarity=0.237  Sum_probs=80.2

Q ss_pred             EEcCCCcEEEEecCCeEEEEe--CCeEEEEEec-C---CCceeceEEcCCCcEEEEeCCCceEEEcC-CC-eEEEEeecC
Q 017520           85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-D---SQTLVGLTSTKEGHLIICDNANGLHKVSE-DG-VENFLSYVN  156 (370)
Q Consensus        85 ~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~-~---~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g-~~~~~~~~~  156 (370)
                      .++.+|.+|+++.+|.|+.++  +|+.. |... .   .... +-.+..+|++|+++....++.++. +| ....... .
T Consensus        64 ~~~~dg~v~~~~~~G~i~A~d~~~g~~~-W~~~~~~~~~~~~-~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~-~  140 (370)
T COG1520          64 PADGDGTVYVGTRDGNIFALNPDTGLVK-WSYPLLGAVAQLS-GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNV-G  140 (370)
T ss_pred             cEeeCCeEEEecCCCcEEEEeCCCCcEE-ecccCcCcceecc-CceEEeCCeEEEecccceEEEEECCCCcEEEEEec-C
Confidence            366789999999999999999  45433 3221 1   1222 333334899999987655999995 88 4433222 2


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CCCCccceEEccCCC
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGVALSRDED  231 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~p~gi~~~~dg~  231 (370)
                      + . .....-++-.++.+|+.+.                  ++.++.+|.++++......     ......... ..++.
T Consensus       141 ~-~-~~~~~~~v~~~~~v~~~s~------------------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~-~~~~~  199 (370)
T COG1520         141 G-S-PYYASPPVVGDGTVYVGTD------------------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPA-IASGT  199 (370)
T ss_pred             C-C-eEEecCcEEcCcEEEEecC------------------CCeEEEEEccCCcEEEEEecCCccccccccCce-eecce
Confidence            2 0 1111223445788888842                  3678888888775532211     111112222 33444


Q ss_pred             EEEEEeC--Cc-EEEEEeCC
Q 017520          232 YVVVCES--WK-CRKYWLKG  248 (370)
Q Consensus       232 ~l~v~~~--~~-l~~~~~~~  248 (370)
                       +|+...  .. ++.+++..
T Consensus       200 -vy~~~~~~~~~~~a~~~~~  218 (370)
T COG1520         200 -VYVGSDGYDGILYALNAED  218 (370)
T ss_pred             -EEEecCCCcceEEEEEccC
Confidence             777766  34 88888743

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.77  E-value=0.0055  Score=60.54  Aligned_cols=85  Identities=12%  Similarity=0.042  Sum_probs=59.5

Q ss_pred             ceEEEEeCCC-----CeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC------CCceeeecc--CCCC
Q 017520          199 GQLLKYDPSS-----NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER------KGKLETFAE--NLPG  263 (370)
Q Consensus       199 g~l~~~d~~t-----~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~------~~~~~~~~~--~~~g  263 (370)
                      ++|..+|..+     ..+..+..--..|.|+.++|||+.+|+++...  +.++|+..-+      +.-...+..  ...-
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl  375 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL  375 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence            5788999876     34555556668999999999999999998765  9999976422      111111111  1222


Q ss_pred             CCCceeECCCCCEEEEEecC
Q 017520          264 APDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       264 ~p~~i~~d~~G~lwv~~~~~  283 (370)
                      .|--.++|.+|+.|++..-.
T Consensus       376 GPLHTaFDg~G~aytslf~d  395 (635)
T PRK02888        376 GPLHTAFDGRGNAYTTLFLD  395 (635)
T ss_pred             CcceEEECCCCCEEEeEeec
Confidence            47778899999999998653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.76  E-value=0.014  Score=54.33  Aligned_cols=185  Identities=15%  Similarity=0.169  Sum_probs=109.7

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~  197 (370)
                      ++...+.|.-++.....+-+.+.  .+|  +........+   -.....++.|||.|+.+-.                 .
T Consensus       308 ~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~---v~~ts~~fHpDgLifgtgt-----------------~  367 (506)
T KOG0289|consen  308 GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSD---VEYTSAAFHPDGLIFGTGT-----------------P  367 (506)
T ss_pred             eeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeecccc---ceeEEeeEcCCceEEeccC-----------------C
Confidence            78888889877766666777766  566  3333222111   1345779999999987743                 4


Q ss_pred             CceEEEEeCCCCeEEEEecCCCC-ccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          198 HGQLLKYDPSSNITTLVADGFYF-ANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~~~~-p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      ++.|-.||.+.+....-+.+... ...|.|+.+|-+|.++...+ |..||+...  .++..+.-...-....+.+|..|.
T Consensus       368 d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl--~n~kt~~l~~~~~v~s~~fD~SGt  445 (506)
T KOG0289|consen  368 DGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKL--KNFKTIQLDEKKEVNSLSFDQSGT  445 (506)
T ss_pred             CceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhh--cccceeeccccccceeEEEcCCCC
Confidence            57777788765542222222222 24688888887666665556 999998543  344444211000144588999997


Q ss_pred             EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC---cEEEEEeCCCCCccccceeEEEECC
Q 017520          276 FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG---TIIRNLVDPTGQLMSFVTSGLQVDN  352 (370)
Q Consensus       276 lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g---~~~~~~~~~~g~~~~~~t~~~~~~g  352 (370)
                      +.+.....                                  -.|+.+....   +.+..+++..|.    .+.+.+.+.
T Consensus       446 ~L~~~g~~----------------------------------l~Vy~~~k~~k~W~~~~~~~~~sg~----st~v~Fg~~  487 (506)
T KOG0289|consen  446 YLGIAGSD----------------------------------LQVYICKKKTKSWTEIKELADHSGL----STGVRFGEH  487 (506)
T ss_pred             eEEeecce----------------------------------eEEEEEecccccceeeehhhhcccc----cceeeeccc
Confidence            66654221                                  2466666433   344455665543    566666666


Q ss_pred             EEEEEeCCCCeEEE
Q 017520          353 HLYVISLTSNFIGK  366 (370)
Q Consensus       353 ~L~~gs~~~~~i~~  366 (370)
                      .-|+++-....+.+
T Consensus       488 aq~l~s~smd~~l~  501 (506)
T KOG0289|consen  488 AQYLASTSMDAILR  501 (506)
T ss_pred             ceEEeeccchhheE
Confidence            67776665555433

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.75  E-value=0.0037  Score=59.02  Aligned_cols=177  Identities=11%  Similarity=0.086  Sum_probs=107.3

Q ss_pred             cCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEE-EecCCCceeceEEcCCCcEEEEeCCCceEEEcC-CC--eEEEE
Q 017520           78 VNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNW-KFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-DG--VENFL  152 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g--~~~~~  152 (370)
                      +..++.|+... +.||+|+..+.|++=+ .+.+... ......-. |++..++.++|+.....+.+++.. ..  +..+.
T Consensus       329 ~G~iRtv~e~~-~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~  406 (626)
T KOG2106|consen  329 FGPIRTVAEGK-GDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII  406 (626)
T ss_pred             cCCeeEEecCC-CcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence            44677777764 3499999777788766 3333222 22233556 999999999999876666666663 33  22222


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      .       .....++++|.|.+-++.                  ..|+.+.+|.++.....+-..-..-+.+.+++||.+
T Consensus       407 ~-------d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~  461 (626)
T KOG2106|consen  407 E-------DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAF  461 (626)
T ss_pred             c-------CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCE
Confidence            1       134567888999666664                  348889999887554444444334467899999999


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      +-++..++ |+.|.++.... ....+..-......-+-.+.|+++.++...
T Consensus       462 lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~  511 (626)
T KOG2106|consen  462 LAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSG  511 (626)
T ss_pred             EEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccC
Confidence            88888887 77666654311 111111011112333445666666666443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.74  E-value=0.027  Score=49.89  Aligned_cols=231  Identities=13%  Similarity=0.103  Sum_probs=138.6

Q ss_pred             EecCCCcCCCcceEEcCCCcE-EEEecCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCc---eEEEc
Q 017520           72 KVGEGSVNHPEDASMDKNGVI-YTATRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANG---LHKVS  144 (370)
Q Consensus        72 ~~~~~~~~~P~~i~~d~~G~l-~v~~~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g---i~~~~  144 (370)
                      ++..|.+..-.++-...|.+. ..++.+|++..||   +.+..-+..+..-.. .-++.|.|++..+..-..   ||.+.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVM-tCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVM-TCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEE-EEEECCCCCeEEecCcCceeEEEecc
Confidence            444566666666667676654 4556999999999   455555544555556 778999999887754433   55555


Q ss_pred             -C--CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CC
Q 017520          145 -E--DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FY  219 (370)
Q Consensus       145 -~--~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~  219 (370)
                       +  +| .++ .....|.. .++....+-+|++|.-+ +                 ++.....+|.++++....+.+ ..
T Consensus       128 ~~d~~g~~~v-~r~l~gHt-gylScC~f~dD~~ilT~-S-----------------GD~TCalWDie~g~~~~~f~GH~g  187 (343)
T KOG0286|consen  128 TRDAEGNVRV-SRELAGHT-GYLSCCRFLDDNHILTG-S-----------------GDMTCALWDIETGQQTQVFHGHTG  187 (343)
T ss_pred             ccccccccee-eeeecCcc-ceeEEEEEcCCCceEec-C-----------------CCceEEEEEcccceEEEEecCCcc
Confidence             3  34 222 12223321 34555566567776433 2                 445677888888776555443 33


Q ss_pred             CccceEEcc-CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchh
Q 017520          220 FANGVALSR-DEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL  296 (370)
Q Consensus       220 ~p~gi~~~~-dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  296 (370)
                      -.-++.++| +++ .|++....  -..+|+..+  .-.+.|. ....-.+.+++-++|.-+++....             
T Consensus       188 DV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~--~c~qtF~-ghesDINsv~ffP~G~afatGSDD-------------  250 (343)
T KOG0286|consen  188 DVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSG--QCVQTFE-GHESDINSVRFFPSGDAFATGSDD-------------  250 (343)
T ss_pred             cEEEEecCCCCCC-eEEecccccceeeeeccCc--ceeEeec-ccccccceEEEccCCCeeeecCCC-------------
Confidence            456788888 888 77776655  666776543  2344443 333346668888888766664433             


Q ss_pred             HHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCe
Q 017520          297 IKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNF  363 (370)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~  363 (370)
                                           +..-.||- ..+.+..|.. +.. +..++++.+. .|+|.+.++...-
T Consensus       251 ---------------------~tcRlyDlRaD~~~a~ys~-~~~-~~gitSv~FS~SGRlLfagy~d~~  296 (343)
T KOG0286|consen  251 ---------------------ATCRLYDLRADQELAVYSH-DSI-ICGITSVAFSKSGRLLFAGYDDFT  296 (343)
T ss_pred             ---------------------ceeEEEeecCCcEEeeecc-Ccc-cCCceeEEEcccccEEEeeecCCc
Confidence                                 33556663 4677777764 333 3345566554 5887777655443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=97.73  E-value=0.025  Score=54.78  Aligned_cols=149  Identities=14%  Similarity=0.101  Sum_probs=83.7

Q ss_pred             eEEEEe-CCe-EEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCC
Q 017520          100 WIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       100 ~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .|+.++ +|. ...+........ .+.+++||+ |..+...   ..|+.++ .+| .+.+.. ..+    ....++++||
T Consensus       185 ~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~-~~g----~~~~~~wSPD  258 (429)
T PRK01742        185 EVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS-FRG----HNGAPAFSPD  258 (429)
T ss_pred             EEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec-CCC----ccCceeECCC
Confidence            455555 443 222222223345 789999996 4333322   2477787 556 444422 222    2235789999


Q ss_pred             Cc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEEe
Q 017520          172 GS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYWL  246 (370)
Q Consensus       172 G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~  246 (370)
                      |+ |.++...               .+.-.||.+|.+++..+.+..........++++||+.++++.. .+   |+.++.
T Consensus       259 G~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        259 GSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             CCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence            96 5555321               1223589999887777666544444567899999997776643 33   677665


Q ss_pred             CCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          247 KGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       247 ~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      .+..   .+.+ . ..+  .+..+++||+.
T Consensus       324 ~~~~---~~~l-~-~~~--~~~~~SpDG~~  346 (429)
T PRK01742        324 SGGG---ASLV-G-GRG--YSAQISADGKT  346 (429)
T ss_pred             CCCC---eEEe-c-CCC--CCccCCCCCCE
Confidence            5431   2222 1 111  24556777764

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.71  E-value=0.013  Score=51.84  Aligned_cols=168  Identities=14%  Similarity=0.111  Sum_probs=108.5

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCce-EEEc-CCC--eEEEEee
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANGL-HKVS-EDG--VENFLSY  154 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~gi-~~~~-~~g--~~~~~~~  154 (370)
                      +.-+-.|+.|.+++.+....-||  .|. ...|....+... +|.+.| +++.||...-.+. ..+| +.+  ++.+...
T Consensus       150 cC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~gh  228 (343)
T KOG0286|consen  150 CCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGH  228 (343)
T ss_pred             EEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCeEEecccccceeeeeccCcceeEeeccc
Confidence            33344489999999998888888  564 566666777888 899988 8999997654444 4444 566  5555322


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecC--CCCccceEEccCCC
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADG--FYFANGVALSRDED  231 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~--~~~p~gi~~~~dg~  231 (370)
                           ...+|.+.+-|+|.-+.+-+                 .++....||... .++.++...  ....+.++|+..|+
T Consensus       229 -----esDINsv~ffP~G~afatGS-----------------DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGR  286 (343)
T KOG0286|consen  229 -----ESDINSVRFFPSGDAFATGS-----------------DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGR  286 (343)
T ss_pred             -----ccccceEEEccCCCeeeecC-----------------CCceeEEEeecCCcEEeeeccCcccCCceeEEEccccc
Confidence                 14688999999999888754                 345555566543 344444322  33457899999999


Q ss_pred             EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          232 YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       232 ~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      .||..-... +.++|.-.   +++........+....+.+.+||.-
T Consensus       287 lLfagy~d~~c~vWDtlk---~e~vg~L~GHeNRvScl~~s~DG~a  329 (343)
T KOG0286|consen  287 LLFAGYDDFTCNVWDTLK---GERVGVLAGHENRVSCLGVSPDGMA  329 (343)
T ss_pred             EEEeeecCCceeEeeccc---cceEEEeeccCCeeEEEEECCCCcE
Confidence            666654444 88887421   2222222234445566778888853

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.68  E-value=0.024  Score=50.70  Aligned_cols=175  Identities=17%  Similarity=0.060  Sum_probs=103.1

Q ss_pred             CcceEEcCCCcEEEEe--cCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCC---cEEEEeCCCceEEEcCCC-eEEE
Q 017520           81 PEDASMDKNGVIYTAT--RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEG---HLIICDNANGLHKVSEDG-VENF  151 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~--~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G---~L~v~~~~~gi~~~~~~g-~~~~  151 (370)
                      -.++|++  | .|+++  .|..|..|| ..  +...+....+... .+.|++.-   .|.-+. ..|...+.+.| +..+
T Consensus        46 itavAVs--~-~~~aSGssDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~shLlS~s-dDG~i~iw~~~~W~~~  120 (362)
T KOG0294|consen   46 ITALAVS--G-PYVASGSSDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSHLLSGS-DDGHIIIWRVGSWELL  120 (362)
T ss_pred             eeEEEec--c-eeEeccCCCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhheeeec-CCCcEEEEEcCCeEEe
Confidence            3456664  3 45544  788899999 32  3444555667777 88887554   455554 44555554444 4333


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~  231 (370)
                      .. ..+.. ..++++++.|.|+|=++..                 .++.+..+|.-.++.-....--..+.-+.|++.|.
T Consensus       121 ~s-lK~H~-~~Vt~lsiHPS~KLALsVg-----------------~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd  181 (362)
T KOG0294|consen  121 KS-LKAHK-GQVTDLSIHPSGKLALSVG-----------------GDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD  181 (362)
T ss_pred             ee-ecccc-cccceeEecCCCceEEEEc-----------------CCceeeeehhhcCccceeeccCCcceeeEEcCCCC
Confidence            22 12222 2499999999999888865                 34556667765555443333333455689999999


Q ss_pred             EEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          232 YVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       232 ~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ..++....+|-.|.++.-+.  +. .. ..+-.+-.+.++..+.+.+|....
T Consensus       182 ~F~v~~~~~i~i~q~d~A~v--~~-~i-~~~~r~l~~~~l~~~~L~vG~d~~  229 (362)
T KOG0294|consen  182 HFVVSGRNKIDIYQLDNASV--FR-EI-ENPKRILCATFLDGSELLVGGDNE  229 (362)
T ss_pred             EEEEEeccEEEEEecccHhH--hh-hh-hccccceeeeecCCceEEEecCCc
Confidence            88888887766665433211  11 11 112234455666667777775543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.68  E-value=0.0016  Score=64.77  Aligned_cols=178  Identities=12%  Similarity=0.136  Sum_probs=107.4

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEE---ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWK---FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~---~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~  151 (370)
                      ...+++++.-|+ .++|...|.|-++|  .|- ...|.   ...+... |++.|.-+++.|+....|++.+. -++.. +
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~~vsa~~~Gilkfw~f~~k~-l  527 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRLLVSAGADGILKFWDFKKKV-L  527 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCceEEEccCcceEEEEecCCcc-e
Confidence            456788888775 66888999999999  453 23331   2344556 99999888999988778998887 22211 1


Q ss_pred             Eeec-CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecCCCCccceEEccC
Q 017520          152 LSYV-NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~-~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~d  229 (370)
                      .... -+   ..+..+.......+.+..                 ...-.|..||..|.++.. +.......+.+++++|
T Consensus       528 ~~~l~l~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~D  587 (910)
T KOG1539|consen  528 KKSLRLG---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPD  587 (910)
T ss_pred             eeeeccC---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCCC
Confidence            1110 01   122222222221111110                 122467888877654432 3334456788999999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |+++..+...+ |+.||+....  ....+.  .+.-+-++.++++|.+..+.+-+
T Consensus       588 grWlisasmD~tIr~wDlpt~~--lID~~~--vd~~~~sls~SPngD~LAT~Hvd  638 (910)
T KOG1539|consen  588 GRWLISASMDSTIRTWDLPTGT--LIDGLL--VDSPCTSLSFSPNGDFLATVHVD  638 (910)
T ss_pred             CcEEEEeecCCcEEEEeccCcc--eeeeEe--cCCcceeeEECCCCCEEEEEEec
Confidence            99999988877 9999986542  222332  22235567777777766666543

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.64  E-value=0.03  Score=56.74  Aligned_cols=148  Identities=12%  Similarity=0.125  Sum_probs=91.2

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEeCC----eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQDG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~~g----~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~  151 (370)
                      .|-..|++|++|. |++...+|.|.+++.+    +.+.+...+.... +++.+. +.+..+...+-+.++. +.+ ...+
T Consensus        14 ~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~-~ia~~s-~~f~~~s~~~tv~~y~fps~~~~~i   91 (933)
T KOG1274|consen   14 GGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVS-SIACYS-NHFLTGSEQNTVLRYKFPSGEEDTI   91 (933)
T ss_pred             CceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeE-EEeecc-cceEEeeccceEEEeeCCCCCccce
Confidence            3567799999885 5566689999999822    1222221222234 666653 3555665555566666 444 2222


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg  230 (370)
                      ...+.    --.+.++++.+|+..+.-+.                 +-.|-.++.++...+..+.+...| -++.++|++
T Consensus        92 L~Rft----lp~r~~~v~g~g~~iaagsd-----------------D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~  150 (933)
T KOG1274|consen   92 LARFT----LPIRDLAVSGSGKMIAAGSD-----------------DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKG  150 (933)
T ss_pred             eeeee----ccceEEEEecCCcEEEeecC-----------------ceeEEEEeccccchheeecccCCceeeeeEcCCC
Confidence            11111    12467899999986555332                 234556665555444455555555 478999999


Q ss_pred             CEEEEEeCCc-EEEEEeCCC
Q 017520          231 DYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ++|.++..++ |..|+++..
T Consensus       151 ~fLAvss~dG~v~iw~~~~~  170 (933)
T KOG1274|consen  151 NFLAVSSCDGKVQIWDLQDG  170 (933)
T ss_pred             CEEEEEecCceEEEEEcccc
Confidence            9999988888 999998765

>PTZ00421 coronin; Provisional

Probab=97.63  E-value=0.069  Score=52.54  Aligned_cols=117  Identities=7%  Similarity=0.002  Sum_probs=71.3

Q ss_pred             ecCCCceeceEEcC-CCcEEEEeCCCc-eEEEc-CCC-eE-E---EEeecCCcccccccceEEcCCC-cEEEEeCCCCCC
Q 017520          114 FIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG-VE-N---FLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL  184 (370)
Q Consensus       114 ~~~~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~-~~g-~~-~---~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~  184 (370)
                      ...+... ++++++ +++++++....+ |..++ +++ .. .   ......+. ...+..+++.|++ ++.++.+     
T Consensus        73 GH~~~V~-~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs-----  145 (493)
T PTZ00421         73 GQEGPII-DVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAG-----  145 (493)
T ss_pred             CCCCCEE-EEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEe-----
Confidence            3445567 899998 777555444444 55555 333 21 0   01111221 1357788999875 5665533     


Q ss_pred             CccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       185 ~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                                  .++.|..||..+++....... ......++++++|+.++.+..++ |..||+...
T Consensus       146 ------------~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        146 ------------ADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             ------------CCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence                        357888999887765433332 33467899999999776666666 888997643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.0066  Score=53.97  Aligned_cols=158  Identities=15%  Similarity=0.157  Sum_probs=91.4

Q ss_pred             eEecCCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe---CCeEEEEEe---------cCCCceeceEEcCCC-cEEEEeC
Q 017520           71 IKVGEGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVNWKF---------IDSQTLVGLTSTKEG-HLIICDN  136 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~---~g~~~~~~~---------~~~~p~~gl~~d~~G-~L~v~~~  136 (370)
                      .+++...+..||.|..-.+|..-+++ .+.+++.+.   +..+.....         ..+....|++.|+.+ +||++-.
T Consensus       121 rtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE  200 (316)
T COG3204         121 RTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE  200 (316)
T ss_pred             EEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence            34554557889999997766555666 677788776   333221111         112233389999755 6999865


Q ss_pred             C--CceEEEc--CCCeE-EEE-eecC--CcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC
Q 017520          137 A--NGLHKVS--EDGVE-NFL-SYVN--GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS  207 (370)
Q Consensus       137 ~--~gi~~~~--~~g~~-~~~-~~~~--g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~  207 (370)
                      .  .+|+.++  ++.+. ... ....  +.-...+.++.+++ .|+++|-..                 .+..|..+|.+
T Consensus       201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-----------------ESr~l~Evd~~  263 (316)
T COG3204         201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-----------------ESRRLLEVDLS  263 (316)
T ss_pred             cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-----------------CCceEEEEecC
Confidence            4  4788887  33311 111 1111  11133556677875 456665532                 23567777766


Q ss_pred             CCeEEEE---------ecCCCCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          208 SNITTLV---------ADGFYFANGVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       208 t~~~~~~---------~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      ..-+..+         ..++..+.||+.|.+|+ ||+...-+ .++|..
T Consensus       264 G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~-lYIvSEPnlfy~F~~  311 (316)
T COG3204         264 GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN-LYIVSEPNLFYRFTP  311 (316)
T ss_pred             CCeeeeEEeccCCCCCcccCCCcceeEECCCCC-EEEEecCCcceeccc
Confidence            4333322         23466789999999999 66655444 677653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=97.61  E-value=0.049  Score=51.91  Aligned_cols=225  Identities=10%  Similarity=0.016  Sum_probs=113.6

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEec---CCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~---~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~  155 (370)
                      +|.+. +++.|+....|.|++-. .| .++.....   .+... .+....++..|+....+.+++-...|  ++......
T Consensus       141 ~v~f~-~~~g~~vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~-~i~~~~~~~~~ivg~~G~v~~S~D~G~tW~~~~~~t  218 (398)
T PLN00033        141 SISFK-GKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPV-LIKATGPKSAEMVTDEGAIYVTSNAGRNWKAAVEET  218 (398)
T ss_pred             eeEEE-CCEEEEEcCceEEEEEcCCCCCceECccccCCCCCce-EEEEECCCceEEEeccceEEEECCCCCCceEccccc
Confidence            35554 35677766667777766 33 35543221   22233 44444455666665444455555445  44331110


Q ss_pred             C-------------Cc-c-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe-EEEEe-cCC
Q 017520          156 N-------------GS-K-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVA-DGF  218 (370)
Q Consensus       156 ~-------------g~-~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~-~~~~~-~~~  218 (370)
                      .             +. . ..+...+...+||.+++...                  .|.+++-+.+.+. ++.+. ...
T Consensus       219 ~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~------------------~G~~~~s~d~G~~~W~~~~~~~~  280 (398)
T PLN00033        219 VSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSS------------------RGNFYLTWEPGQPYWQPHNRASA  280 (398)
T ss_pred             ccccccccccccccccceeccceeeEEEcCCCCEEEEEC------------------CccEEEecCCCCcceEEecCCCc
Confidence            0             00 0 01234456667777666643                  2566665444333 23332 222


Q ss_pred             CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC--ceeeeccC-CCCCCCceeECCCCCEEEEEecCchhHHHhhhcc
Q 017520          219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG--KLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  294 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~--~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~  294 (370)
                      ....++.+.+++. +|++...+ +++-+-.+....  ++...... ....+.++.+..++++|++-..+           
T Consensus       281 ~~l~~v~~~~dg~-l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G-----------  348 (398)
T PLN00033        281 RRIQNMGWRADGG-LWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSG-----------  348 (398)
T ss_pred             cceeeeeEcCCCC-EEEEeCCceEEEecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCC-----------
Confidence            3446778888888 55555555 665543332110  11111101 11113446677889999997765           


Q ss_pred             hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeE
Q 017520          295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFI  364 (370)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i  364 (370)
                                              .+++-...|+........++. ......+.+ .+++.|+.+.++-.+
T Consensus       349 ------------------------~v~~s~D~G~tW~~~~~~~~~-~~~ly~v~f~~~~~g~~~G~~G~il  394 (398)
T PLN00033        349 ------------------------ILLRSTDGGKSWKRDKGADNI-AANLYSVKFFDDKKGFVLGNDGVLL  394 (398)
T ss_pred             ------------------------cEEEeCCCCcceeEccccCCC-CcceeEEEEcCCCceEEEeCCcEEE
Confidence                                    355555667766654322322 122335554 458999999887643

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=97.59  E-value=0.00056  Score=50.16  Aligned_cols=61  Identities=11%  Similarity=0.157  Sum_probs=46.6

Q ss_pred             ceEEcCC-CcEEEEe------------------cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-Cc
Q 017520           83 DASMDKN-GVIYTAT------------------RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NG  139 (370)
Q Consensus        83 ~i~~d~~-G~l~v~~------------------~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~g  139 (370)
                      +++++++ |.||+++                  .+|+++++|  +++.+++......|+ |+++++|+. |+|++.. .+
T Consensus         2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~R   80 (89)
T PF03088_consen    2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRYR   80 (89)
T ss_dssp             EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGTE
T ss_pred             ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCce
Confidence            5788887 9999986                  258999999  778888888888899 999999997 8888766 57


Q ss_pred             eEEEc
Q 017520          140 LHKVS  144 (370)
Q Consensus       140 i~~~~  144 (370)
                      |.++.
T Consensus        81 i~ryw   85 (89)
T PF03088_consen   81 ILRYW   85 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88876

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=97.53  E-value=0.032  Score=49.99  Aligned_cols=201  Identities=15%  Similarity=0.187  Sum_probs=104.0

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~  152 (370)
                      ..+++.+.+-|. |-+|..+|+|..||  +-.+......--+|..+++.++||+.+++... ..+..+| .+|  ++.+.
T Consensus        25 ~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir  104 (405)
T KOG1273|consen   25 LAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR  104 (405)
T ss_pred             ccceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence            378888998885 45788999999999  43333222222345448999999987776544 3444455 444  22221


Q ss_pred             -e-ecCCcc-------------c-ccccc----------eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          153 -S-YVNGSK-------------L-RFAND----------VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       153 -~-~~~g~~-------------~-~~~~~----------l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                       + ..-+..             + .++.-          |..|++|.+=.+.+-.  -++....-++.+...|.+..||.
T Consensus       105 f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~--~fdr~g~yIitGtsKGkllv~~a  182 (405)
T KOG1273|consen  105 FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHG--VFDRRGKYIITGTSKGKLLVYDA  182 (405)
T ss_pred             ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccc--cccCCCCEEEEecCcceEEEEec
Confidence             0 000000             0 01111          1112222221111100  01111112333445688889988


Q ss_pred             CCCeEEEEe--cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC----CCCceee---eccCCCCC-CCceeECCCCC
Q 017520          207 SSNITTLVA--DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE----RKGKLET---FAENLPGA-PDNINLAPDGT  275 (370)
Q Consensus       207 ~t~~~~~~~--~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~----~~~~~~~---~~~~~~g~-p~~i~~d~~G~  275 (370)
                      +|-++....  +.......|.++..|+++.+..+.+ |+.|+++.-    +.+..+.   +.+..... =...+++.+|.
T Consensus       183 ~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge  262 (405)
T KOG1273|consen  183 ETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE  262 (405)
T ss_pred             chheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc
Confidence            766543221  1223455688899999877777777 888886521    2222221   11100001 13578999998


Q ss_pred             EEEEEec
Q 017520          276 FWIAIIK  282 (370)
Q Consensus       276 lwv~~~~  282 (370)
                      +.++...
T Consensus       263 Yv~a~s~  269 (405)
T KOG1273|consen  263 YVCAGSA  269 (405)
T ss_pred             EEEeccc
Confidence            7777553

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.52  E-value=0.17  Score=53.11  Aligned_cols=174  Identities=10%  Similarity=0.067  Sum_probs=96.9

Q ss_pred             cceEEcC-C-CcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCc-eEEEc-CCC--eEEE
Q 017520           82 EDASMDK-N-GVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG--VENF  151 (370)
Q Consensus        82 ~~i~~d~-~-G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~-~~g--~~~~  151 (370)
                      .++++.+ + ..|..++.+|.|..|+  +++ ...+....+... ++++++ ++.++++....| |..++ .++  +..+
T Consensus       536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~-~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVW-SIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             eeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEE-EEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            4566654 2 3466666899999999  444 334434455567 899985 677666554545 55555 455  3333


Q ss_pred             EeecCCcccccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEEecCCCCccceEEcc
Q 017520          152 LSYVNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSR  228 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~~~~~p~gi~~~~  228 (370)
                      ..      ...+..+.+. ++|+..++.+                 .++.|+.||..+...  ..+.........+.+. 
T Consensus       615 ~~------~~~v~~v~~~~~~g~~latgs-----------------~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-  670 (793)
T PLN00181        615 KT------KANICCVQFPSESGRSLAFGS-----------------ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-  670 (793)
T ss_pred             ec------CCCeEEEEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence            11      1234556664 4677666543                 457899999865432  2222222234556675 


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCC----CceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERK----GKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~----~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +++.++.+...+ |..||+.....    .....+. ........+.++++|++.++..
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v~~s~~~~~lasgs  727 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFVGLSVSDGYIATGS  727 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEEEEcCCCCEEEEEe
Confidence            666666666666 88888753211    1112221 2222344577888887655543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.51  E-value=0.07  Score=48.41  Aligned_cols=106  Identities=17%  Similarity=0.147  Sum_probs=64.0

Q ss_pred             CCceeceEEcCCCcEEEEeC-CC--ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec
Q 017520          117 SQTLVGLTSTKEGHLIICDN-AN--GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       117 ~~p~~gl~~d~~G~L~v~~~-~~--gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~  191 (370)
                      .+.+ +++.++.....|+-. .-  -.+.+| .+| ........++.  ++--.-++++||++.+++.+ .+        
T Consensus         5 ~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--HFyGHg~fs~dG~~LytTEn-d~--------   72 (305)
T PF07433_consen    5 ARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--HFYGHGVFSPDGRLLYTTEN-DY--------   72 (305)
T ss_pred             cccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--EEecCEEEcCCCCEEEEecc-cc--------
Confidence            4567 888888554333322 22  366777 566 33333332332  22224688999975555443 11        


Q ss_pred             ccccCCCceEEEEeCCCC--eEEEEecCCCCccceEEccCCCEEEEEe
Q 017520          192 ILEGKPHGQLLKYDPSSN--ITTLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~--~~~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                         ....|.|-+||...+  ++..+......|.-+.+.+||+.|+|++
T Consensus        73 ---~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVAN  117 (305)
T PF07433_consen   73 ---ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVAN  117 (305)
T ss_pred             ---CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEc
Confidence               235678889998722  2233445566789999999998899987

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.49  E-value=0.011  Score=59.82  Aligned_cols=166  Identities=13%  Similarity=0.148  Sum_probs=98.2

Q ss_pred             cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCccccccc
Q 017520           91 VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRFAN  164 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~~~  164 (370)
                      ++.+++.++.|.++.  .+....+..-..-|.-.++++.+|+..++... ..|-.++ .++  .+.+... .    ..+-
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh-~----apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH-D----APVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc-C----Ccee
Confidence            566677788888887  44433222211223227899989987776544 4666666 444  3333221 1    2456


Q ss_pred             ceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC----C-----ccceEEccCCCEEEE
Q 017520          165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY----F-----ANGVALSRDEDYVVV  235 (370)
Q Consensus       165 ~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~----~-----p~gi~~~~dg~~l~v  235 (370)
                      .|.++|+|++....+                 .+|.|+.||.+++.+....+++.    +     -.-++|+|+|..+.+
T Consensus       143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence            789999999877754                 67899999998776544443322    1     134789999776777


Q ss_pred             EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE
Q 017520          236 CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA  279 (370)
Q Consensus       236 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~  279 (370)
                      ....+ |..|+.++-.. .+..-.+.....-..+..++.|.+..+
T Consensus       206 ~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  206 PPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             eccCCeEEEEccCCcee-heeecccccccceEEEEEcCCCcEEee
Confidence            77767 88898765311 111101111111344667888854433

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.47  E-value=0.066  Score=47.20  Aligned_cols=184  Identities=11%  Similarity=0.134  Sum_probs=112.2

Q ss_pred             CCCcCCCcceEEcCCCcEEE-EecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEcCCC--
Q 017520           75 EGSVNHPEDASMDKNGVIYT-ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVSEDG--  147 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v-~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~g--  147 (370)
                      .|.-..-++++..+||+..+ ++.|+.+..+|  .|+ ...+........ ++++++|.+-.|..... -|..++--|  
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~qivSGSrDkTiklwnt~g~c  138 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQIVSGSRDKTIKLWNTLGVC  138 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCceeecCCCcceeeeeeecccE
Confidence            34333456678888887665 55899888899  554 344555556677 99999999877765553 355555323  


Q ss_pred             eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVA  225 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~  225 (370)
                      .-.+..   +..-..++.+.+.|.. +.+|...+                .+..|-.+|.++-+.+.. ...-..-+.++
T Consensus       139 k~t~~~---~~~~~WVscvrfsP~~~~p~Ivs~s----------------~DktvKvWnl~~~~l~~~~~gh~~~v~t~~  199 (315)
T KOG0279|consen  139 KYTIHE---DSHREWVSCVRFSPNESNPIIVSAS----------------WDKTVKVWNLRNCQLRTTFIGHSGYVNTVT  199 (315)
T ss_pred             EEEEec---CCCcCcEEEEEEcCCCCCcEEEEcc----------------CCceEEEEccCCcchhhccccccccEEEEE
Confidence            222222   1113578889999875 55555443                456788888876555432 23334567899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++|||....-.+.++ +..+|+...+-  ...+  ........+++.++ ++|+....+
T Consensus       200 vSpDGslcasGgkdg~~~LwdL~~~k~--lysl--~a~~~v~sl~fspn-rywL~~at~  253 (315)
T KOG0279|consen  200 VSPDGSLCASGGKDGEAMLWDLNEGKN--LYSL--EAFDIVNSLCFSPN-RYWLCAATA  253 (315)
T ss_pred             ECCCCCEEecCCCCceEEEEEccCCce--eEec--cCCCeEeeEEecCC-ceeEeeccC
Confidence            999998433334444 88888765421  2111  11123456888875 588876544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.47  E-value=0.043  Score=51.79  Aligned_cols=78  Identities=18%  Similarity=0.202  Sum_probs=57.5

Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEE
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW  277 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  277 (370)
                      ..|-.||.++++++....++.....+.+++||+.+.+++... |+.+|++.+   +.+..-....++..++...+++ -|
T Consensus       382 D~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng---nv~~idkS~~~lItdf~~~~ns-r~  457 (668)
T COG4946         382 DKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG---NVRLIDKSEYGLITDFDWHPNS-RW  457 (668)
T ss_pred             ceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC---CeeEecccccceeEEEEEcCCc-ee
Confidence            368889999999888888999999999999999888887766 999999865   3333222233455666666665 45


Q ss_pred             EEE
Q 017520          278 IAI  280 (370)
Q Consensus       278 v~~  280 (370)
                      ++-
T Consensus       458 iAY  460 (668)
T COG4946         458 IAY  460 (668)
T ss_pred             EEE
Confidence            554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.46  E-value=0.028  Score=52.58  Aligned_cols=152  Identities=15%  Similarity=0.195  Sum_probs=74.5

Q ss_pred             EEcCCC-cEEE-Ee--cCCeEEEEe--CCeEEEEEecCC-CceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEee
Q 017520           85 SMDKNG-VIYT-AT--RDGWIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSY  154 (370)
Q Consensus        85 ~~d~~G-~l~v-~~--~~g~I~~~~--~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~  154 (370)
                      ++..|| .|.+ ++  .+.+++.++  +++.+.+....+ ... |..+.++.+ +|.......|.+++ .+. .+.+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            345566 4444 44  345688888  788887765443 244 666666664 54333356899999 666 5455443


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCC--CCC---ccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc-
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSK--YLP---HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-  228 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~--~~~---~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~-  228 (370)
                      ..+.  ..--..+.+.|++.+++....+  +..   -..+.++.+..+..+|+++|.++|+.+++...-..-+-+.++| 
T Consensus       121 p~~~--~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  121 PDDW--KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             -TTE--EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETT
T ss_pred             Cccc--ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCC
Confidence            3221  1111234567888777643211  110   1134456667788899999999999998876555455556665 


Q ss_pred             CCCEEEEEeCC
Q 017520          229 DEDYVVVCESW  239 (370)
Q Consensus       229 dg~~l~v~~~~  239 (370)
                      |...+-+|..+
T Consensus       199 dp~li~fCHEG  209 (386)
T PF14583_consen  199 DPTLIMFCHEG  209 (386)
T ss_dssp             EEEEEEEEE-S
T ss_pred             CCCEEEEeccC
Confidence            33445555443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.46  E-value=0.085  Score=48.22  Aligned_cols=214  Identities=14%  Similarity=0.183  Sum_probs=105.7

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEe---cCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeec
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKF---IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~  155 (370)
                      +|.++ +...|+....|.|++-. .| .++.+..   ..+.+. ++....++..+++.....|++-...|  .+.+....
T Consensus        66 ~I~f~-~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~-~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~  143 (302)
T PF14870_consen   66 SISFD-GNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPF-GITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSET  143 (302)
T ss_dssp             EEEEE-TTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EE-EEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S-
T ss_pred             EEEec-CCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCee-EEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCC
Confidence            34444 34677766677777776 34 4665432   235667 77666677777776556677776555  66554432


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEE-EEeCCCCeEEEEec-CCCCccceEEccCCCEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVAD-GFYFANGVALSRDEDYV  233 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l  233 (370)
                      .    ..++++...+||++.....                  .|.++ -.|+.....+.... .......+.+++|++ +
T Consensus       144 ~----gs~~~~~r~~dG~~vavs~------------------~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~-l  200 (302)
T PF14870_consen  144 S----GSINDITRSSDGRYVAVSS------------------RGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGN-L  200 (302)
T ss_dssp             -------EEEEEE-TTS-EEEEET------------------TSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS--E
T ss_pred             c----ceeEeEEECCCCcEEEEEC------------------cccEEEEecCCCccceEEccCccceehhceecCCCC-E
Confidence            2    3677788888998554432                  25555 44554333444433 245567889999987 7


Q ss_pred             EEEeCCc-EEEEEeCCCCCCceeeeccC-C----CCC-CCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          234 VVCESWK-CRKYWLKGERKGKLETFAEN-L----PGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~----~g~-p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      |....++ |+.-+...    ..+.+.+. .    .++ .-.++..+++.+|++...+                       
T Consensus       201 w~~~~Gg~~~~s~~~~----~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-----------------------  253 (302)
T PF14870_consen  201 WMLARGGQIQFSDDPD----DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG-----------------------  253 (302)
T ss_dssp             EEEETTTEEEEEE-TT----EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----------------------
T ss_pred             EEEeCCcEEEEccCCC----CccccccccCCcccCceeeEEEEecCCCCEEEEeCCc-----------------------
Confidence            7777777 44444111    12222110 1    111 1235778889999987765                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTS  361 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~  361 (370)
                                  .+++=...|+..+.....+....+. ..+.+ .+++-|+-+-++
T Consensus       254 ------------~l~~S~DgGktW~~~~~~~~~~~n~-~~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  254 ------------TLLVSTDGGKTWQKDRVGENVPSNL-YRIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             -------------EEEESSTTSS-EE-GGGTTSSS----EEEEEETTEEEEE-STT
T ss_pred             ------------cEEEeCCCCccceECccccCCCCce-EEEEEcCCCceEEECCCc
Confidence                        3555555677777654433332233 33443 456777766554

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=97.45  E-value=0.11  Score=49.26  Aligned_cols=106  Identities=16%  Similarity=0.236  Sum_probs=63.6

Q ss_pred             CCCcEEEEecCCeEEEEe--CCeEEEEEecCC--CceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccc
Q 017520           88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLR  161 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~--~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~  161 (370)
                      .+|+||+++.+|.++.++  +|+........+  .-. +-.+-.++.+|+....+.++.++ .+| .........+....
T Consensus       110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            389999999999999999  677655444443  122 33344588999986446799999 568 43332221101111


Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                      ...... ..+|.+|++..+               . ++.++.+|+.+++.
T Consensus       189 ~~~~~~-~~~~~vy~~~~~---------------~-~~~~~a~~~~~G~~  221 (370)
T COG1520         189 IYGSPA-IASGTVYVGSDG---------------Y-DGILYALNAEDGTL  221 (370)
T ss_pred             cccCce-eecceEEEecCC---------------C-cceEEEEEccCCcE
Confidence            111122 567889998542               0 23677777766654

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=97.44  E-value=0.065  Score=48.18  Aligned_cols=124  Identities=17%  Similarity=0.196  Sum_probs=73.0

Q ss_pred             cceEEcc--CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC-CCC--CCCceeECCCCCEEEEEecCchhHHHhhhcc
Q 017520          222 NGVALSR--DEDYVVVCESWK--CRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKLDARRMKILNSS  294 (370)
Q Consensus       222 ~gi~~~~--dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~  294 (370)
                      .|+++..  .++.||.++-..  |-+||-.=.+......|.+. +|.  -|-||.- -.|+|||+-....-         
T Consensus       141 kGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~---------  210 (336)
T TIGR03118       141 KGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDA---------  210 (336)
T ss_pred             eeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEE-ECCeEEEEEEecCC---------
Confidence            4667664  367899999755  88887332111111112221 221  2455543 34789999654211         


Q ss_pred             hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-------ECCEEEEEeCCCCeEEEE
Q 017520          295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-------VDNHLYVISLTSNFIGKV  367 (370)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-------~~g~L~~gs~~~~~i~~~  367 (370)
                                 ..+. -......|.|-.||.+|++++.|.+. |. .+....++.       -.|.|.+|++....|-.+
T Consensus       211 -----------~~~d-~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaF  276 (336)
T TIGR03118       211 -----------DRND-EVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAY  276 (336)
T ss_pred             -----------cccc-cccCCCcceEEEEcCCCcEEEEeccC-Cc-ccCCceeeeChhhhCCCCCCeEEeecCCceeEEe
Confidence                       0000 01255668999999999999999653 33 333333332       147899999999899888


Q ss_pred             eC
Q 017520          368 QL  369 (370)
Q Consensus       368 ~~  369 (370)
                      +.
T Consensus       277 D~  278 (336)
T TIGR03118       277 DP  278 (336)
T ss_pred             cC
Confidence            74

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.44  E-value=0.021  Score=56.33  Aligned_cols=187  Identities=13%  Similarity=0.119  Sum_probs=96.0

Q ss_pred             eEEc-CCCcEEEEecCC------------------eEEEEe--CCeEEEEEecCC-------Cceec-eEE---cCCCc-
Q 017520           84 ASMD-KNGVIYTATRDG------------------WIKRLQ--DGTWVNWKFIDS-------QTLVG-LTS---TKEGH-  130 (370)
Q Consensus        84 i~~d-~~G~l~v~~~~g------------------~I~~~~--~g~~~~~~~~~~-------~p~~g-l~~---d~~G~-  130 (370)
                      .++| ..|.+|+++.++                  .|+.+|  +|+.........       .+. . +..   +-+|. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s-~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPN-QPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCC-CCeEEeccccCCCe
Confidence            5677 467899998665                  799999  787654332110       011 1 111   12443 


Q ss_pred             ---EEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520          131 ---LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (370)
Q Consensus       131 ---L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  205 (370)
                         +|++...+.++.++ ++| ...-... .      ...++.++ +.+|+.......+..............|.|+.+|
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~-~------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD  372 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPE-V------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALD  372 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEe-e------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEe
Confidence               77776666699999 688 3322111 0      11234444 7788864321111100000000112457899999


Q ss_pred             CCCCeEEEEecCCC--------Cc--cc-eEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520          206 PSSNITTLVADGFY--------FA--NG-VALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD  273 (370)
Q Consensus       206 ~~t~~~~~~~~~~~--------~p--~g-i~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  273 (370)
                      ..+++..-......        .+  .+ ++.  .++.+|+.+..+ |+.+|.++.+.--...+......-|  +....+
T Consensus       373 ~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P--~~~~~~  448 (488)
T cd00216         373 PKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATP--MTYEVN  448 (488)
T ss_pred             CCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcC--EEEEeC
Confidence            98887543222110        11  11 222  345688887766 9999976542211111110111112  444568


Q ss_pred             CCEEEEEecC
Q 017520          274 GTFWIAIIKL  283 (370)
Q Consensus       274 G~lwv~~~~~  283 (370)
                      |++||++..+
T Consensus       449 g~~yv~~~~g  458 (488)
T cd00216         449 GKQYVGVMVG  458 (488)
T ss_pred             CEEEEEEEec
Confidence            9999999776

The alignment model contains an 8-bladed beta-propeller.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.41  E-value=0.054  Score=53.81  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCC----C--------ceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----Q--------TLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----~--------p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      +|.||+++.++.|+.+|  +|+...-.....    .        .. ++++. ++++|+++....++.+| ++| ...-.
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            68999999889999999  776443221110    0        12 44554 67899998778899999 688 33221


Q ss_pred             eecCCcc--cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          153 SYVNGSK--LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       153 ~~~~g~~--~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      .. ....  ......-.+ .+|.+|++.++..++            ..+.|+.+|.++|+..
T Consensus       147 ~~-~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~------------~~G~v~AlD~~TG~~l  194 (527)
T TIGR03075       147 KN-GDYKAGYTITAAPLV-VKGKVITGISGGEFG------------VRGYVTAYDAKTGKLV  194 (527)
T ss_pred             cc-ccccccccccCCcEE-ECCEEEEeecccccC------------CCcEEEEEECCCCcee
Confidence            11 1100  000111122 257888886532221            3467778887777653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PTZ00420 coronin; Provisional

Probab=97.41  E-value=0.17  Score=50.50  Aligned_cols=117  Identities=7%  Similarity=-0.058  Sum_probs=69.1

Q ss_pred             cCCCceeceEEcCC-CcEEEEeCCCc-eEEEc-CCC---eEEEE---eecCCcccccccceEEcCCCcEEEEeCCCCCCC
Q 017520          115 IDSQTLVGLTSTKE-GHLIICDNANG-LHKVS-EDG---VENFL---SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP  185 (370)
Q Consensus       115 ~~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~~-~~g---~~~~~---~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~  185 (370)
                      ..+... .++++++ ++++++....+ |..++ +++   ...+.   ....+. ...++.+++.|++...+...+     
T Consensus        73 H~~~V~-~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS-----  145 (568)
T PTZ00420         73 HTSSIL-DLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-KKKISIIDWNPMNYYIMCSSG-----  145 (568)
T ss_pred             CCCCEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-CCcEEEEEECCCCCeEEEEEe-----
Confidence            345566 8999986 56666544444 44444 433   11110   011221 235788999998864433222     


Q ss_pred             ccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          186 HEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       186 ~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                                 .++.|..||..+++.............++++++|+.+..+...+ |..||+...
T Consensus       146 -----------~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        146 -----------FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             -----------CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence                       35788889987765433222223457889999999665555555 889997653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.39  E-value=0.0071  Score=56.83  Aligned_cols=130  Identities=13%  Similarity=0.121  Sum_probs=87.6

Q ss_pred             cEEEEecCC-eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEeecCCccccccc
Q 017520           91 VIYTATRDG-WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFAN  164 (370)
Q Consensus        91 ~l~v~~~~g-~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~  164 (370)
                      .+.+|+.+| .|-.++  +|+.+.+....+... .+.++++|. +.+++....|+.++ .+| .+.+-..    ....+.
T Consensus       373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS----~~~lIt  447 (668)
T COG4946         373 GDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKS----EYGLIT  447 (668)
T ss_pred             ceEEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccc----ccceeE
Confidence            356677666 666777  667788888888888 999999998 66666556789999 788 6654322    223566


Q ss_pred             ceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC
Q 017520          165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       165 ~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      ++++.++++ |++-+     +.       +.--...+-.||.+++++-.+.+....-..-++|+|++.||+-..
T Consensus       448 df~~~~nsr-~iAYa-----fP-------~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         448 DFDWHPNSR-WIAYA-----FP-------EGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             EEEEcCCce-eEEEe-----cC-------cceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEec
Confidence            788888776 45521     11       011123566788887776555555445556789999999998764

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.39  E-value=0.0046  Score=61.00  Aligned_cols=79  Identities=15%  Similarity=0.161  Sum_probs=48.0

Q ss_pred             cccccccceEEcCCCcEEEEeCCCCCCCc--c-----ceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEcc
Q 017520          158 SKLRFANDVVEASDGSLYFTVSSSKYLPH--E-----YCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSR  228 (370)
Q Consensus       158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~--~-----~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~  228 (370)
                      ..+.+|..|++|++|+|||..........  .     ....+....+.. +...++.+++++.++..  .....|+++++
T Consensus       433 ~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~rf~~~P~gaE~tG~~fsp  511 (524)
T PF05787_consen  433 NGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELKRFLVGPNGAEITGPCFSP  511 (524)
T ss_pred             CCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeeccccccceeeeccCCCCcccccceECC
Confidence            34678889999999999998654221110  0     000010111111 55567777777766543  34567999999


Q ss_pred             CCCEEEEEe
Q 017520          229 DEDYVVVCE  237 (370)
Q Consensus       229 dg~~l~v~~  237 (370)
                      |++.||+.-
T Consensus       512 Dg~tlFvni  520 (524)
T PF05787_consen  512 DGRTLFVNI  520 (524)
T ss_pred             CCCEEEEEE
Confidence            999888853

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.38  E-value=0.028  Score=52.70  Aligned_cols=222  Identities=15%  Similarity=0.176  Sum_probs=122.6

Q ss_pred             eEEcCCCc--EEEEecCCeEEEEe--CCeEEEEEecCCCc----eeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEE
Q 017520           84 ASMDKNGV--IYTATRDGWIKRLQ--DGTWVNWKFIDSQT----LVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENF  151 (370)
Q Consensus        84 i~~d~~G~--l~v~~~~g~I~~~~--~g~~~~~~~~~~~p----~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~  151 (370)
                      .++.++|.  ++++....-.|.||  ..++..+....+.+    . -+.++++++..+.... +-|+.+. .++  +..+
T Consensus       263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e-~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~  341 (514)
T KOG2055|consen  263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSME-RFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF  341 (514)
T ss_pred             eeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhh-eeEecCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence            44555664  44555555566677  66666554444332    2 3566788874443333 3466666 455  3332


Q ss_pred             EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEcc
Q 017520          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSR  228 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~  228 (370)
                      .  .+    ..+.+++++.||+ ||++.                  ..|.||.+|..+..+....  .+......+|.+.
T Consensus       342 K--ie----G~v~~~~fsSdsk~l~~~~------------------~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~  397 (514)
T KOG2055|consen  342 K--IE----GVVSDFTFSSDSKELLASG------------------GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISL  397 (514)
T ss_pred             e--ec----cEEeeEEEecCCcEEEEEc------------------CCceEEEEecCCcceEEEEeecCccceeeeeecC
Confidence            1  12    2567889999995 66663                  3478999998877654333  3344556688889


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCCC-ceeee--ccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhC
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERKG-KLETF--AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAY  304 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~--~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (370)
                      ++.++-.....+ |-.|+.+.-..+ +.+++  .+++.--.+.+.+.+|+.|..=+...                     
T Consensus       398 ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~---------------------  456 (514)
T KOG2055|consen  398 NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRV---------------------  456 (514)
T ss_pred             CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhc---------------------
Confidence            998444444444 778875432111 11111  12333335667777777543322221                     


Q ss_pred             CccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--CCEEEEEeCCCC
Q 017520          305 PKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--DNHLYVISLTSN  362 (370)
Q Consensus       305 ~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~g~L~~gs~~~~  362 (370)
                               .+++-.++++ |.=.+..+|.... .....++++.+.  +|.|-+|+-.+.
T Consensus       457 ---------~knalrLVHv-PS~TVFsNfP~~n-~~vg~vtc~aFSP~sG~lAvGNe~gr  505 (514)
T KOG2055|consen  457 ---------KKNALRLVHV-PSCTVFSNFPTSN-TKVGHVTCMAFSPNSGYLAVGNEAGR  505 (514)
T ss_pred             ---------cccceEEEec-cceeeeccCCCCC-CcccceEEEEecCCCceEEeecCCCc
Confidence                     1111112222 4445566676654 446678888876  478888876654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.35  E-value=0.019  Score=53.21  Aligned_cols=177  Identities=16%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             CCcceEEcCC--C-cEEEEecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeEEE
Q 017520           80 HPEDASMDKN--G-VIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENF  151 (370)
Q Consensus        80 ~P~~i~~d~~--G-~l~v~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~  151 (370)
                      ...++.+-|.  + .|-.+..||.+.-|+ +++  +..+.....+.. .++|.|+|..+.+.....-.++.  .++.+.+
T Consensus       219 ~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL  297 (459)
T KOG0272|consen  219 RVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKFLGTASFDSTWRLWDLETKSELL  297 (459)
T ss_pred             ceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCceeeecccccchhhcccccchhhH
Confidence            3344444442  2 566666788777777 432  233333344566 89999999987766554444444  3331111


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg  230 (370)
                      .  ..|. ...+.++++.+||.+-.+.+.               ...++|  +|..++....++.+ .....+++|+|+|
T Consensus       298 ~--QEGH-s~~v~~iaf~~DGSL~~tGGl---------------D~~~Rv--WDlRtgr~im~L~gH~k~I~~V~fsPNG  357 (459)
T KOG0272|consen  298 L--QEGH-SKGVFSIAFQPDGSLAATGGL---------------DSLGRV--WDLRTGRCIMFLAGHIKEILSVAFSPNG  357 (459)
T ss_pred             h--hccc-ccccceeEecCCCceeeccCc---------------cchhhe--eecccCcEEEEecccccceeeEeECCCc
Confidence            1  1232 246889999999999877542               122444  57777777666544 5567899999999


Q ss_pred             CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      -.+.-+...+ +.++|+...+.  ... +.........++++++++.++.+
T Consensus       358 y~lATgs~Dnt~kVWDLR~r~~--ly~-ipAH~nlVS~Vk~~p~~g~fL~T  405 (459)
T KOG0272|consen  358 YHLATGSSDNTCKVWDLRMRSE--LYT-IPAHSNLVSQVKYSPQEGYFLVT  405 (459)
T ss_pred             eEEeecCCCCcEEEeeeccccc--cee-cccccchhhheEecccCCeEEEE
Confidence            7655555555 77777765321  111 11233355678888744444443

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=97.32  E-value=0.0033  Score=56.19  Aligned_cols=108  Identities=16%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             ceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520          119 TLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      .. ++.|+.|+.-..........++.  +.|  ++.+    .|. ..++|...+.+||+-.++.+               
T Consensus       309 vt-~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf----rGH-sSyvn~a~ft~dG~~iisaS---------------  367 (508)
T KOG0275|consen  309 VT-CLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF----RGH-SSYVNEATFTDDGHHIISAS---------------  367 (508)
T ss_pred             ee-EEEEccCcchhhcccccceEEEeccccchhHHHh----cCc-cccccceEEcCCCCeEEEec---------------
Confidence            45 78898888655544455677776  556  4443    222 25789999999998777765               


Q ss_pred             cCCCceEEEEeCCCCeEEEEecCC---CCccceEEcc-CCCEEEEEeCCc-EEEEEeCCC
Q 017520          195 GKPHGQLLKYDPSSNITTLVADGF---YFANGVALSR-DEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~~~~~~~---~~p~gi~~~~-dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                        .+|.|-.|+.++.++...+..+   ...|.+.+-| +-..++|++..+ |+..++.|.
T Consensus       368 --sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ  425 (508)
T KOG0275|consen  368 --SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ  425 (508)
T ss_pred             --CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce
Confidence              3578888888776553222111   1224444433 345688888777 888887764

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.29  E-value=0.035  Score=51.70  Aligned_cols=158  Identities=18%  Similarity=0.249  Sum_probs=89.1

Q ss_pred             cCCCcceEEc-CCCcEEEEecCCe------EEEEe-C---Ce---EE-----EEEecCC--------CceeceEEcCCCc
Q 017520           78 VNHPEDASMD-KNGVIYTATRDGW------IKRLQ-D---GT---WV-----NWKFIDS--------QTLVGLTSTKEGH  130 (370)
Q Consensus        78 ~~~P~~i~~d-~~G~l~v~~~~g~------I~~~~-~---g~---~~-----~~~~~~~--------~p~~gl~~d~~G~  130 (370)
                      +.+=.+|+.+ .+|.+|+-+.+|.      ++.+. +   +.   ++     .+....+        .+- ||++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEecCCC
Confidence            4455678888 5677776665666      77666 2   11   11     1112222        344 789988999


Q ss_pred             EEEEeCCC-------ceEEEcCCC--eEEE-Eee-c-------CC-cccccccceEEcCCCc-EEEEeCCCCCCCcccee
Q 017520          131 LIICDNAN-------GLHKVSEDG--VENF-LSY-V-------NG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCL  190 (370)
Q Consensus       131 L~v~~~~~-------gi~~~~~~g--~~~~-~~~-~-------~g-~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~  190 (370)
                      +||++.+.       .|++++.+|  .+.+ .+. .       .+ .......+|++.+||+ ||+...+.-.+....  
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~--  175 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR--  175 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc--
Confidence            99997654       589999777  3333 111 1       11 1234667899999997 898866521111000  


Q ss_pred             cccccCCCceEEEEeCCCCe--EEEE---ec------CCCCccceEEccCCCEEEEEeCC
Q 017520          191 DILEGKPHGQLLKYDPSSNI--TTLV---AD------GFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       191 ~~~~~~~~g~l~~~d~~t~~--~~~~---~~------~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      ........-++++||+.+..  ...+   .+      ....+..++.-+|++ ++|-|..
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLER~  234 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLERD  234 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEEcc
Confidence            00001112478899987522  2211   12      223444566677887 8888876

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.28  E-value=0.024  Score=53.48  Aligned_cols=63  Identities=24%  Similarity=0.345  Sum_probs=41.0

Q ss_pred             CccceEEccC-------CCEEEEEeCCc--EEEEEeCCCCCCceeeecc-CCCCCCCceeECCCCCEEEEEecC
Q 017520          220 FANGVALSRD-------EDYVVVCESWK--CRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       220 ~p~gi~~~~d-------g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      .|-|++|...       ++ ++++....  +.+.+.++...-..+.+.. ...+.|.++++.+||.|++++..+
T Consensus       315 ApsGmaFy~G~~fP~~r~~-lfV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~  387 (399)
T COG2133         315 APSGMAFYTGDLFPAYRGD-LFVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQG  387 (399)
T ss_pred             ccceeEEecCCcCccccCc-EEEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCC
Confidence            4556666532       33 88888776  7777766652222233332 234789999999999999998764

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=97.27  E-value=0.036  Score=52.00  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=73.3

Q ss_pred             CCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCce-e----ceEEcCCCc---EEEEeCC----C--ceEEEc-CCC-eE
Q 017520           88 KNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTL-V----GLTSTKEGH---LIICDNA----N--GLHKVS-EDG-VE  149 (370)
Q Consensus        88 ~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~-~----gl~~d~~G~---L~v~~~~----~--gi~~~~-~~g-~~  149 (370)
                      +...+++++ .+++++.|+ +|+...... .++++ .    ++..  .|.   |.++...    .  .+++++ .+| ++
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~-~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~  142 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKELQSLP-VGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELT  142 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EEEEE--SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEEEeec-CCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcce
Confidence            344567666 778899999 887555442 34554 0    2333  232   4444322    1  367777 456 65


Q ss_pred             EEEeecC--CcccccccceEE--cC-CCcEEEEeCCCCCCCccceecccccCCCceEE--EEe-CCCCeE-----EEEec
Q 017520          150 NFLSYVN--GSKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL--KYD-PSSNIT-----TLVAD  216 (370)
Q Consensus       150 ~~~~~~~--g~~~~~~~~l~~--d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~--~~d-~~t~~~-----~~~~~  216 (370)
                      .+.....  ...+..+.+++.  ++ +|.+|+-...                .+|.+.  ++. ...+.+     +. +.
T Consensus       143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~----------------k~G~~~Qy~L~~~~~g~v~~~lVR~-f~  205 (381)
T PF02333_consen  143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG----------------KDGRVEQYELTDDGDGKVSATLVRE-FK  205 (381)
T ss_dssp             E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE----------------TTSEEEEEEEEE-TTSSEEEEEEEE-EE
T ss_pred             EcCCCCcccccccccceeeEEeecCCCCcEEEEEec----------------CCceEEEEEEEeCCCCcEeeEEEEE-ec
Confidence            5432110  012234667776  33 5766665332                223333  332 222322     22 22


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ....+.|+++|.....||+++... ||+|+.+..
T Consensus       206 ~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~  239 (381)
T PF02333_consen  206 VGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPE  239 (381)
T ss_dssp             -SS-EEEEEEETTTTEEEEEETTTEEEEEESSCC
T ss_pred             CCCcceEEEEecccCCEEEecCccEEEEEecCCC
Confidence            345789999999888999999988 999998643

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.27  E-value=0.34  Score=50.95  Aligned_cols=146  Identities=14%  Similarity=0.070  Sum_probs=84.8

Q ss_pred             CcceEEcCCCcEE-EEecCCeEEEEe-CC-----eE----EEEEecCCCceeceEEcCC-CcEEEEeCCCceEE-Ec-CC
Q 017520           81 PEDASMDKNGVIY-TATRDGWIKRLQ-DG-----TW----VNWKFIDSQTLVGLTSTKE-GHLIICDNANGLHK-VS-ED  146 (370)
Q Consensus        81 P~~i~~d~~G~l~-v~~~~g~I~~~~-~g-----~~----~~~~~~~~~p~~gl~~d~~-G~L~v~~~~~gi~~-~~-~~  146 (370)
                      -.+++++++|.+. ++..++.|..|+ ..     ..    ........... ++++.+. +...++....|.++ ++ .+
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~las~~~Dg~v~lWd~~~  564 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQVASSNFEGVVQVWDVAR  564 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCEEEEEeCCCeEEEEECCC
Confidence            4568889988755 555889999887 22     10    00111122344 7777653 45444433445444 45 44


Q ss_pred             C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g  223 (370)
                      +  +..+    .+. ...+..+++++ +|.++++.+                 .++.|..||..++..............
T Consensus       565 ~~~~~~~----~~H-~~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~~  622 (793)
T PLN00181        565 SQLVTEM----KEH-EKRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANICC  622 (793)
T ss_pred             CeEEEEe----cCC-CCCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeEE
Confidence            5  3322    111 13578899986 678777754                 357788899876654332222233445


Q ss_pred             eEEc-cCCCEEEEEeCCc-EEEEEeCCC
Q 017520          224 VALS-RDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       224 i~~~-~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      +.+. +++..+.++...+ |..||+...
T Consensus       623 v~~~~~~g~~latgs~dg~I~iwD~~~~  650 (793)
T PLN00181        623 VQFPSESGRSLAFGSADHKVYYYDLRNP  650 (793)
T ss_pred             EEEeCCCCCEEEEEeCCCeEEEEECCCC
Confidence            6664 4677677776666 999997643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=97.25  E-value=0.14  Score=46.81  Aligned_cols=150  Identities=12%  Similarity=0.102  Sum_probs=88.5

Q ss_pred             ecCCCceeceEEcCCCcEEEEeCC--CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520          114 FIDSQTLVGLTSTKEGHLIICDNA--NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       114 ~~~~~p~~gl~~d~~G~L~v~~~~--~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~  189 (370)
                      .++..|...|...+||..|+....  ..|...+ .+| ...+..    .......-+-++|||...|+..          
T Consensus       192 ~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~----~glgg~slLkwSPdgd~lfaAt----------  257 (445)
T KOG2139|consen  192 DPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP----KGLGGFSLLKWSPDGDVLFAAT----------  257 (445)
T ss_pred             CCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc----cCCCceeeEEEcCCCCEEEEec----------
Confidence            334445447888999998887554  3466666 455 333321    1123455688999998777753          


Q ss_pred             ecccccCCCceEEEEeC--CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC--C----Ccee--ee
Q 017520          190 LDILEGKPHGQLLKYDP--SSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER--K----GKLE--TF  257 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~--~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~--~----~~~~--~~  257 (370)
                             . .+++++-.  ++...+...-+-....+-+++|+|++|+++-.+.  |+....++..  .    +..+  ..
T Consensus       258 -------~-davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  258 -------C-DAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             -------c-cceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeee
Confidence                   2 23444332  2222222222333667889999999999998877  7776554431  0    0001  11


Q ss_pred             cc-----------CCCCCCCceeECCCCCEEEEEecCch
Q 017520          258 AE-----------NLPGAPDNINLAPDGTFWIAIIKLDA  285 (370)
Q Consensus       258 ~~-----------~~~g~p~~i~~d~~G~lwv~~~~~~~  285 (370)
                      .+           ...|.+.-++.|+.|++.+.+..+.+
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            11           01245666999999998888877754

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.24  E-value=0.019  Score=56.65  Aligned_cols=123  Identities=20%  Similarity=0.344  Sum_probs=71.7

Q ss_pred             cccccccceEEcCC-CcEEEEeCCCCCC-Cccc-eecccccCCCceEEEEeCCCC-------eEEEEe------------
Q 017520          158 SKLRFANDVVEASD-GSLYFTVSSSKYL-PHEY-CLDILEGKPHGQLLKYDPSSN-------ITTLVA------------  215 (370)
Q Consensus       158 ~~~~~~~~l~~d~~-G~l~v~d~~~~~~-~~~~-~~~~~~~~~~g~l~~~d~~t~-------~~~~~~------------  215 (370)
                      .++.-+.++.+++. |.+||+.++..-. .... ..........|.|++++++.+       .++.+.            
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            45778899999984 7999997642210 0000 001112345689999998755       333332            


Q ss_pred             ------cCCCCccceEEccCCCEEEEEeCCc---EE---------EEE----------eCCCCCCceeeecc-CCCCCCC
Q 017520          216 ------DGFYFANGVALSRDEDYVVVCESWK---CR---------KYW----------LKGERKGKLETFAE-NLPGAPD  266 (370)
Q Consensus       216 ------~~~~~p~gi~~~~dg~~l~v~~~~~---l~---------~~~----------~~~~~~~~~~~~~~-~~~g~p~  266 (370)
                            ..+.+|.+|+++++|+ ||+++..+   ..         .|.          ..+...+....|.. .......
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~t  505 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEIT  505 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccc
Confidence                  1256789999999999 78877554   21         011          11223334444432 1223466


Q ss_pred             ceeECCCCC-EEEEEe
Q 017520          267 NINLAPDGT-FWIAII  281 (370)
Q Consensus       267 ~i~~d~~G~-lwv~~~  281 (370)
                      |+++++||+ +||...
T Consensus       506 G~~fspDg~tlFvniQ  521 (524)
T PF05787_consen  506 GPCFSPDGRTLFVNIQ  521 (524)
T ss_pred             cceECCCCCEEEEEEe
Confidence            788999995 777643

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.23  E-value=0.017  Score=57.25  Aligned_cols=181  Identities=12%  Similarity=0.080  Sum_probs=107.3

Q ss_pred             eEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc---CCC-eEEEEeec
Q 017520           84 ASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS---EDG-VENFLSYV  155 (370)
Q Consensus        84 i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~~~~~~  155 (370)
                      ..+.++.+..+.+ .|+.|.-|.  +-. ...+. ....|.-.+.|.|-|.-+++....+..++.   .+- .+.++.. 
T Consensus       457 ~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifagh-  534 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGH-  534 (707)
T ss_pred             eeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhccc-
Confidence            3445555555444 556666555  222 22222 222332156777776655554444555554   222 4544433 


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVV  234 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~  234 (370)
                          +..+..+.+.|+.+...+- +                .+.++..||..+|....++.+...| ..++++|+|++|.
T Consensus       535 ----lsDV~cv~FHPNs~Y~aTG-S----------------sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  535 ----LSDVDCVSFHPNSNYVATG-S----------------SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             ----ccccceEEECCcccccccC-C----------------CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence                2356668888887754443 3                3457888888877766666665544 6799999999777


Q ss_pred             EEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCch-hHHHh
Q 017520          235 VCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA-RRMKI  290 (370)
Q Consensus       235 v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~-~~~~~  290 (370)
                      -+...+ |..||+.+.+.  ...+.. ..+...-+.++.||++.++..+..+ .+||+
T Consensus       594 Sg~ed~~I~iWDl~~~~~--v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~  648 (707)
T KOG0263|consen  594 SGDEDGLIKIWDLANGSL--VKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDL  648 (707)
T ss_pred             ecccCCcEEEEEcCCCcc--hhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence            777777 88888765321  222222 2455677889999999998766543 44443

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.21  E-value=0.0005  Score=38.71  Aligned_cols=25  Identities=28%  Similarity=0.520  Sum_probs=16.1

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEE
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKR  103 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~  103 (370)
                      ..|.+|++|++|+|||++ .+++|.+
T Consensus         2 ~~P~gvav~~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SSEEEEEEETTSEEEEEECCCTEEEE
T ss_pred             cCCcEEEEeCCCCEEEEECCCCEEEE
Confidence            456777777777777776 4555554

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.14  E-value=0.23  Score=48.09  Aligned_cols=78  Identities=13%  Similarity=0.049  Sum_probs=45.8

Q ss_pred             CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC--c--EEE--EEeCCCCCCceeeeccCCCCCCCceeEC
Q 017520          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--K--CRK--YWLKGERKGKLETFAENLPGAPDNINLA  271 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~--~--l~~--~~~~~~~~~~~~~~~~~~~g~p~~i~~d  271 (370)
                      ...||.++.++++.+.+...-......+++|||+.|.++...  .  ++.  ++++....+..+.+.....+.....+++
T Consensus       210 ~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS  289 (428)
T PRK01029        210 VPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS  289 (428)
T ss_pred             CceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEEC
Confidence            457999999888776665432233457899999888877632  2  554  4554322223333332222223456778


Q ss_pred             CCCC
Q 017520          272 PDGT  275 (370)
Q Consensus       272 ~~G~  275 (370)
                      +||+
T Consensus       290 PDG~  293 (428)
T PRK01029        290 PDGT  293 (428)
T ss_pred             CCCC
Confidence            8886

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.14  E-value=0.012  Score=50.98  Aligned_cols=172  Identities=9%  Similarity=0.095  Sum_probs=90.1

Q ss_pred             CcceEEcCC-CcEEEEecCCeEEEE-e-CC---eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEE
Q 017520           81 PEDASMDKN-GVIYTATRDGWIKRL-Q-DG---TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENF  151 (370)
Q Consensus        81 P~~i~~d~~-G~l~v~~~~g~I~~~-~-~g---~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~  151 (370)
                      ...++++.| .+|..|..+. |+|+ + +.   ..+.+....+.....+....|..++-+...+.|..+| ++|  ++.+
T Consensus       103 vk~~af~~ds~~lltgg~ek-llrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL  181 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEK-LLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSL  181 (334)
T ss_pred             eeeEEecccchhhhccchHH-HhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEE
Confidence            344666654 3566665443 4443 3 21   2233322222222012223344444433334555566 677  4433


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~  231 (370)
                      ...      ..++.+.+.+||++.....                  .+.|.-+|+++-..-.-..--...+...++|+..
T Consensus       182 ~~~------s~VtSlEvs~dG~ilTia~------------------gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~  237 (334)
T KOG0278|consen  182 EFN------SPVTSLEVSQDGRILTIAY------------------GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKE  237 (334)
T ss_pred             ecC------CCCcceeeccCCCEEEEec------------------CceeEEeccccccceeeccCccccccccccCCCc
Confidence            211      3678899999998655432                  2467777775433221112223445667889885


Q ss_pred             EEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          232 YVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       232 ~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                       +||+....  +++||..++.  +...+....+|-..-+.++++|.+|..-
T Consensus       238 -~fVaGged~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsG  285 (334)
T KOG0278|consen  238 -FFVAGGEDFKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASG  285 (334)
T ss_pred             -eEEecCcceEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeecc
Confidence             78887655  9999987542  2333323344434456677777777654

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.14  E-value=0.16  Score=44.63  Aligned_cols=142  Identities=11%  Similarity=0.123  Sum_probs=82.1

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCce-eceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEe
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTL-VGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~-~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~  153 (370)
                      .|--+.-|..-.+|+|+..+.+..+|  .|+...-...+.+.- +.+.+  .+-+.++-+.+++|.+. ++|  ...+..
T Consensus        14 spLVV~~dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~vv--gdfVV~GCy~g~lYfl~~~tGs~~w~f~~   91 (354)
T KOG4649|consen   14 SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIVV--GDFVVLGCYSGGLYFLCVKTGSQIWNFVI   91 (354)
T ss_pred             CcEEEecCCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEEE--CCEEEEEEccCcEEEEEecchhheeeeee
Confidence            45555556677899999999999999  676543322233322 02333  22366666667788888 777  222211


Q ss_pred             ecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc----cceEEcc
Q 017520          154 YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----NGVALSR  228 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----~gi~~~~  228 (370)
                      . +...    ..-..|.++ -||.+..                  ++..|.+|+.+..... .  .+.+    .+-++++
T Consensus        92 ~-~~vk----~~a~~d~~~glIycgsh------------------d~~~yalD~~~~~cVy-k--skcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   92 L-ETVK----VRAQCDFDGGLIYCGSH------------------DGNFYALDPKTYGCVY-K--SKCGGGTFVSPVIAP  145 (354)
T ss_pred             h-hhhc----cceEEcCCCceEEEecC------------------CCcEEEecccccceEE-e--cccCCceeccceecC
Confidence            1 1000    122556654 6888853                  4678888887654422 1  2223    3345666


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCC
Q 017520          229 DEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      -...||++.+.+ +.+...+..
T Consensus       146 g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  146 GDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             CCceEEEEeccceEEEEccCCC
Confidence            333599999988 888876543

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.12  E-value=0.16  Score=44.51  Aligned_cols=136  Identities=19%  Similarity=0.167  Sum_probs=77.6

Q ss_pred             cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-C-CCeEEEEeecCCccccccc
Q 017520           91 VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-E-DGVENFLSYVNGSKLRFAN  164 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~-~g~~~~~~~~~g~~~~~~~  164 (370)
                      .+.+|..+|.+|.++  +|+. -.+.. .+..-..-..|.++ -+|.+..++..+.+| + .+ -+....-.|.-+.+| 
T Consensus        65 fVV~GCy~g~lYfl~~~tGs~~w~f~~-~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP-  141 (354)
T KOG4649|consen   65 FVVLGCYSGGLYFLCVKTGSQIWNFVI-LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSP-  141 (354)
T ss_pred             EEEEEEccCcEEEEEecchhheeeeee-hhhhccceEEcCCCceEEEecCCCcEEEecccccc-eEEecccCCceeccc-
Confidence            466777788898888  6632 22221 11111022234444 678888888899998 3 33 111123344444455 


Q ss_pred             ceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec------CCCCc----cceEE-ccCCCE
Q 017520          165 DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFYFA----NGVAL-SRDEDY  232 (370)
Q Consensus       165 ~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~~p----~gi~~-~~dg~~  232 (370)
                        ++++ +|.||++..+                  |.|++.++++...+.+..      -+..|    ..+.+ .-||+.
T Consensus       142 --~i~~g~~sly~a~t~------------------G~vlavt~~~~~~~~~w~~~~~~PiF~splcv~~sv~i~~VdG~l  201 (354)
T KOG4649|consen  142 --VIAPGDGSLYAAITA------------------GAVLAVTKNPYSSTEFWAATRFGPIFASPLCVGSSVIITTVDGVL  201 (354)
T ss_pred             --eecCCCceEEEEecc------------------ceEEEEccCCCCcceehhhhcCCccccCceeccceEEEEEeccEE
Confidence              7777 8899999653                  789998887664443321      11122    11222 247776


Q ss_pred             EEEEeCCc-EEEEEeCCC
Q 017520          233 VVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~  249 (370)
                      +-+++.++ ||||.-+|+
T Consensus       202 ~~f~~sG~qvwr~~t~Gp  219 (354)
T KOG4649|consen  202 TSFDESGRQVWRPATKGP  219 (354)
T ss_pred             EEEcCCCcEEEeecCCCc
Confidence            66776666 888876654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.08  E-value=0.073  Score=46.28  Aligned_cols=133  Identities=12%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             CCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEeecCCccccc
Q 017520           88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRF  162 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~~~~g~~~~~  162 (370)
                      .|..+..++.++.|..||  +|+...-......+. ++-+.++|++.....+.+|...+.+.   ++.+.-.      -.
T Consensus       154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P------~n  226 (334)
T KOG0278|consen  154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMP------CN  226 (334)
T ss_pred             cCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEEecCceeEEeccccccceeeccCc------cc
Confidence            344555556778888888  776554444444566 89999999988877666777777443   3322111      12


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCc-cceEEccCCCEEEEEeCCc
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFA-NGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p-~gi~~~~dg~~l~v~~~~~  240 (370)
                      ++.-...|+-.+||+-.                 ....+++||-.|+.-... ..+...| ..+.++|||. +|.+.+..
T Consensus       227 V~SASL~P~k~~fVaGg-----------------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAsGSED  288 (334)
T KOG0278|consen  227 VESASLHPKKEFFVAGG-----------------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYASGSED  288 (334)
T ss_pred             cccccccCCCceEEecC-----------------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeeccCCC
Confidence            33445567778888843                 346799999888754433 2333344 5688999998 88887655


Q ss_pred             -EEEEE
Q 017520          241 -CRKYW  245 (370)
Q Consensus       241 -l~~~~  245 (370)
                       -.|+|
T Consensus       289 GTirlW  294 (334)
T KOG0278|consen  289 GTIRLW  294 (334)
T ss_pred             ceEEEE
Confidence             33444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.06  E-value=0.16  Score=45.24  Aligned_cols=161  Identities=18%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             eEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE---EecCCCCccceEEccCCCEEEEEeCCcE
Q 017520          166 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVVVCESWKC  241 (370)
Q Consensus       166 l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~---~~~~~~~p~gi~~~~dg~~l~v~~~~~l  241 (370)
                      =++++||. ||.|...    +         ....|.|-.||.. .....   +.+....|.-+.+.+||+.+.+++- +|
T Consensus       119 Gvfs~dG~~LYATEnd----f---------d~~rGViGvYd~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG-GI  183 (366)
T COG3490         119 GVFSPDGRLLYATEND----F---------DPNRGVIGVYDAR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG-GI  183 (366)
T ss_pred             cccCCCCcEEEeecCC----C---------CCCCceEEEEecc-cccceecccccCCcCcceeEEecCCcEEEEeCC-ce
Confidence            47789997 5555321    1         1134556667765 22222   2233456888999999997777663 22


Q ss_pred             EEE--------EeCC--CC-------CCce-eeeccCCC-----CCCCceeECCCCCEEEEEec--CchhHHHhhhcchh
Q 017520          242 RKY--------WLKG--ER-------KGKL-ETFAENLP-----GAPDNINLAPDGTFWIAIIK--LDARRMKILNSSKL  296 (370)
Q Consensus       242 ~~~--------~~~~--~~-------~~~~-~~~~~~~~-----g~p~~i~~d~~G~lwv~~~~--~~~~~~~~~~~~~~  296 (370)
                      ..-        +++.  +.       .++. ++  ..+|     -..+-+.++.||++|.++.-  .++..-++++....
T Consensus       184 ethpdfgR~~lNldsMePSlvlld~atG~liek--h~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~  261 (366)
T COG3490         184 ETHPDFGRTELNLDSMEPSLVLLDAATGNLIEK--HTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRK  261 (366)
T ss_pred             ecccccCccccchhhcCccEEEEeccccchhhh--ccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccC
Confidence            211        1110  00       0000 00  0111     01344778999999999843  23333333221111


Q ss_pred             HHHH-HHhCCccc--------cccccCCCceEEEEECCCCcEEEEEeCCCCCcccc
Q 017520          297 IKHV-LAAYPKLF--------SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF  343 (370)
Q Consensus       297 ~~~~-~~~~~~~~--------~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~  343 (370)
                      -+.+ ...+|+..        ..+..+...+.|..-+|.|+....+....|.+...
T Consensus       262 g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~  317 (366)
T COG3490         262 GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE  317 (366)
T ss_pred             CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence            1110 01122211        11233566677777788888888888878864443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=97.00  E-value=0.064  Score=51.14  Aligned_cols=142  Identities=16%  Similarity=0.087  Sum_probs=83.0

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe-CCe--EEEEEecCC-CceeceEEcCCCcEEEEeCCCceEEEcCCC--eE--EEEeec
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ-DGT--WVNWKFIDS-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VE--NFLSYV  155 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~-~g~--~~~~~~~~~-~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~--~~~~~~  155 (370)
                      +...++|.+++....|.+++-. +|.  ++....... ... ++.+.++|.+|++...++++.-..+|  .+  .+....
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~  322 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEAD  322 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecc
Confidence            3455778888777778788766 553  354433332 344 88888999999988666666665555  21  232211


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCC-CccceEEccCCCE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFY-FANGVALSRDEDY  232 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~-~p~gi~~~~dg~~  232 (370)
                      .......+.++.+.+++++|++-.                  .|.+++-....+.++...  +.+. .-..+.+..+++ 
T Consensus       323 ~~~~~~~l~~v~~~~d~~~~a~G~------------------~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-  383 (398)
T PLN00033        323 IKSRGFGILDVGYRSKKEAWAAGG------------------SGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-  383 (398)
T ss_pred             cCCCCcceEEEEEcCCCcEEEEEC------------------CCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-
Confidence            111113467788888999999843                  245555544433334332  1211 123666666666 


Q ss_pred             EEEEeCCc-EEEEE
Q 017520          233 VVVCESWK-CRKYW  245 (370)
Q Consensus       233 l~v~~~~~-l~~~~  245 (370)
                      .|+....+ |.||.
T Consensus       384 g~~~G~~G~il~~~  397 (398)
T PLN00033        384 GFVLGNDGVLLRYL  397 (398)
T ss_pred             eEEEeCCcEEEEeC
Confidence            77777666 77763

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.99  E-value=0.038  Score=54.81  Aligned_cols=110  Identities=13%  Similarity=0.189  Sum_probs=63.0

Q ss_pred             EEEEEecCCCceeceEEcCCCc-EEEEeCCC-ceEEEc-CCCe----------EEEEee-cCCcccccccceEEcCCCcE
Q 017520          109 WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVS-EDGV----------ENFLSY-VNGSKLRFANDVVEASDGSL  174 (370)
Q Consensus       109 ~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-gi~~~~-~~g~----------~~~~~~-~~g~~~~~~~~l~~d~~G~l  174 (370)
                      +..+...+.+|+ |+.++|||. +|++.... -+-.+| .+..          ..+... .-|   ..|-..++|.+|+.
T Consensus       313 v~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~a  388 (635)
T PRK02888        313 LTRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNA  388 (635)
T ss_pred             eEEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCE
Confidence            445556778899 999999996 67765443 355555 2211          111111 112   35667899999999


Q ss_pred             EEEeCCCCCCCccceecccccCCCceEEEEeCCC-------CeEEEEe---cCCCCc------cceEEccCCCEEEEEeC
Q 017520          175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-------NITTLVA---DGFYFA------NGVALSRDEDYVVVCES  238 (370)
Q Consensus       175 ~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-------~~~~~~~---~~~~~p------~gi~~~~dg~~l~v~~~  238 (370)
                      |.+-.                 -+..|.+||.++       .++..+.   +-.+.|      .|=..++||++|+..+-
T Consensus       389 ytslf-----------------~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk  451 (635)
T PRK02888        389 YTTLF-----------------LDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK  451 (635)
T ss_pred             EEeEe-----------------ecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence            98843                 234677777643       1111111   122333      34445889997776664


Q ss_pred             C
Q 017520          239 W  239 (370)
Q Consensus       239 ~  239 (370)
                      .
T Consensus       452 ~  452 (635)
T PRK02888        452 F  452 (635)
T ss_pred             c
Confidence            3

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=96.98  E-value=0.028  Score=52.95  Aligned_cols=176  Identities=14%  Similarity=0.217  Sum_probs=103.9

Q ss_pred             CcceEEcCCCcEE-EEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCC-cEEEEeC-CCceEEEc-CCC--eEEEE
Q 017520           81 PEDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN-ANGLHKVS-EDG--VENFL  152 (370)
Q Consensus        81 P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~-~~gi~~~~-~~g--~~~~~  152 (370)
                      -.++.+..+|.=+ .++-|..|.-||  +|....-....-.|. .+.+.+|+ +++++.. .+.|..+| ++|  ++.+ 
T Consensus       261 Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~-cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY-  338 (503)
T KOG0282|consen  261 VRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPT-CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY-  338 (503)
T ss_pred             hhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCce-eeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH-
Confidence            3455666666433 334566666677  676555445555677 89999988 7766544 46799998 777  3322 


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDE  230 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~dg  230 (370)
                          +..+..++++.+=++|+=+|+.+                 ....+..++-.......+.  .....--.+.+.|.+
T Consensus       339 ----d~hLg~i~~i~F~~~g~rFissS-----------------Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~  397 (503)
T KOG0282|consen  339 ----DRHLGAILDITFVDEGRRFISSS-----------------DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG  397 (503)
T ss_pred             ----HhhhhheeeeEEccCCceEeeec-----------------cCccEEEEEcCCCccchhhcchhhccCcceecCCCC
Confidence                23346788999988998888765                 2345555554333211111  111111246778888


Q ss_pred             CEEEEEeCCc--EEEEEeCCC-CCCceeeecc-CCCCCCCceeECCCCCEEEEE
Q 017520          231 DYVVVCESWK--CRKYWLKGE-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       231 ~~l~v~~~~~--l~~~~~~~~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      + ++.+.+..  |..|..... +....+.|.. ..+|++-.+.+++||.+.+.-
T Consensus       398 ~-~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SG  450 (503)
T KOG0282|consen  398 K-WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSG  450 (503)
T ss_pred             C-eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEee
Confidence            7 55555443  666654332 2333333422 356788889999999766654

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.018  Score=48.73  Aligned_cols=103  Identities=22%  Similarity=0.304  Sum_probs=66.0

Q ss_pred             CCCceeceEEcCCCcEEEEeCCCceEEEcCCC---eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520          116 DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (370)
Q Consensus       116 ~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g---~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~  192 (370)
                      .|.-. |++.| +.+|+.++...-+...|+.-   ...+.-..+|.|....|.+.. -||.+|.-..             
T Consensus       130 ~GeGW-gLt~d-~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw-------------  193 (262)
T COG3823         130 EGEGW-GLTSD-DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVW-------------  193 (262)
T ss_pred             CCcce-eeecC-CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeee-------------
Confidence            45667 88887 44688887554455555321   122212236667777777755 3576665432             


Q ss_pred             cccCCCceEEEEeCCCCeEEEEec-------------CCCCccceEEccCCCEEEEEeC
Q 017520          193 LEGKPHGQLLKYDPSSNITTLVAD-------------GFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~~~~~~~-------------~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                          .+.+|.|++|++|++....+             ...-.||||.+++++.+|++.-
T Consensus       194 ----~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK  248 (262)
T COG3823         194 ----QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK  248 (262)
T ss_pred             ----eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence                23578999999998765432             1235799999999988998875

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=96.96  E-value=0.28  Score=44.50  Aligned_cols=121  Identities=20%  Similarity=0.231  Sum_probs=68.7

Q ss_pred             EEEEe-cCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CC-----C------eEEEEee-
Q 017520           92 IYTAT-RDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-----G------VENFLSY-  154 (370)
Q Consensus        92 l~v~~-~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~-----g------~~~~~~~-  154 (370)
                      |-+++ +.|++..+.   +|.+........+|. |++.+ .++||++.. ..|.++. ..     +      -..+.+. 
T Consensus        20 la~sTYQagkL~~ig~~~~g~l~~~~r~F~r~M-Gl~~~-~~~l~~~t~-~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~   96 (335)
T TIGR03032        20 LAVTTYQAGKLFFIGLQPNGELDVFERTFPRPM-GLAVS-PQSLTLGTR-YQLWRFANVDNLLPAGQTHPGYDRLYVPRA   96 (335)
T ss_pred             EEEEeeecceEEEEEeCCCCcEEEEeeccCccc-eeeee-CCeEEEEEc-ceeEEcccccccccccccCCCCCeEEeeee
Confidence            34444 455565553   566666666677899 99997 468999874 4688882 11     1      1111110 


Q ss_pred             --cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE----------ecCCCCcc
Q 017520          155 --VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----------ADGFYFAN  222 (370)
Q Consensus       155 --~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----------~~~~~~p~  222 (370)
                        ..|  .-.+++|++ .++.+||.++.                 -..|..+++. -.+...          ..+-..=|
T Consensus        97 ~~~TG--didiHdia~-~~~~l~fVNT~-----------------fSCLatl~~~-~SF~P~WkPpFIs~la~eDRCHLN  155 (335)
T TIGR03032        97 SYVTG--DIDAHDLAL-GAGRLLFVNTL-----------------FSCLATVSPD-YSFVPLWKPPFISKLAPEDRCHLN  155 (335)
T ss_pred             eeecc--Ccchhheee-cCCcEEEEECc-----------------ceeEEEECCC-CccccccCCccccccCccCceeec
Confidence              111  125678899 67789998763                 1345555553 222211          11223458


Q ss_pred             ceEEccCCCEEEEEe
Q 017520          223 GVALSRDEDYVVVCE  237 (370)
Q Consensus       223 gi~~~~dg~~l~v~~  237 (370)
                      |+|+. ||+--||+-
T Consensus       156 GlA~~-~g~p~yVTa  169 (335)
T TIGR03032       156 GMALD-DGEPRYVTA  169 (335)
T ss_pred             ceeee-CCeEEEEEE
Confidence            99885 566677765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=96.95  E-value=0.3  Score=44.75  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=29.3

Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                      ++|+|..+++|++.|+..                 ....|+++|++++++.-...
T Consensus       145 HiNsV~~~~~G~yLiS~R-----------------~~~~i~~I~~~tG~I~W~lg  182 (299)
T PF14269_consen  145 HINSVDKDDDGDYLISSR-----------------NTSTIYKIDPSTGKIIWRLG  182 (299)
T ss_pred             EeeeeeecCCccEEEEec-----------------ccCEEEEEECCCCcEEEEeC
Confidence            678899999999888854                 34579999988887765543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.93  E-value=0.51  Score=46.98  Aligned_cols=160  Identities=12%  Similarity=0.049  Sum_probs=83.3

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC-----CceeceEEcCCCcEEEEeC------CCceEEEc-CCC-e
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS-EDG-V  148 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~-----~p~~gl~~d~~G~L~v~~~------~~gi~~~~-~~g-~  148 (370)
                      +++. ++.+|+++.+|.|+.+|  +|+...-.....     .......+. +|.+|++..      .+.|+.++ ++| .
T Consensus       116 ~av~-~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~  193 (527)
T TIGR03075       116 VALY-DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKL  193 (527)
T ss_pred             ceEE-CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCce
Confidence            3443 57899999999999999  787543222111     011012222 678888753      24588888 678 3


Q ss_pred             EEEEeecCCc--------------c--------------cccccceEEcCC-CcEEEEeCCCCCCCccceeccccc--CC
Q 017520          149 ENFLSYVNGS--------------K--------------LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEG--KP  197 (370)
Q Consensus       149 ~~~~~~~~g~--------------~--------------~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~--~~  197 (370)
                      ..-....+..              +              -+....+++|++ |.+|+...+-.-    |.......  .-
T Consensus       194 lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p----~~~~~r~gdnl~  269 (527)
T TIGR03075       194 VWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSP----WNSHLRPGDNLY  269 (527)
T ss_pred             eEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCC----CCCCCCCCCCcc
Confidence            3221111100              0              012235788874 679998754110    11011001  12


Q ss_pred             CceEEEEeCCCCeEEEEecC-------CCC---ccceEEccCCC---EEEEEeCCc-EEEEEeCCC
Q 017520          198 HGQLLKYDPSSNITTLVADG-------FYF---ANGVALSRDED---YVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~-------~~~---p~gi~~~~dg~---~l~v~~~~~-l~~~~~~~~  249 (370)
                      ...|+.+|.+||+..-....       ...   |.-+.+..+|+   .+......+ ++.+|..+.
T Consensus       270 ~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG  335 (527)
T TIGR03075       270 TSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG  335 (527)
T ss_pred             ceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence            44799999999987654321       111   22233334555   333444444 777776543

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.93  E-value=0.041  Score=50.51  Aligned_cols=183  Identities=19%  Similarity=0.218  Sum_probs=102.6

Q ss_pred             eEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceece-----------EEcC---------
Q 017520           71 IKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGL-----------TSTK---------  127 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl-----------~~d~---------  127 (370)
                      .....|....-.+|....+|.||.|+.|+.|..|+  +|+.-. +.......+ .|           +|++         
T Consensus       240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN-~lalsTdy~LRtgaf~~t~~~~~~~s  318 (480)
T KOG0271|consen  240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN-HLALSTDYVLRTGAFDHTGRKPKSFS  318 (480)
T ss_pred             EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchhee-eeeccchhhhhccccccccccCCChH
Confidence            33344555556777777899999999999999888  553211 000000000 00           1111         


Q ss_pred             ----------------CCcEEEEeCCC-ceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520          128 ----------------EGHLIICDNAN-GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       128 ----------------~G~L~v~~~~~-gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~  189 (370)
                                      .|+-.|...+. -++..++.. .+.+ ....|. ...+|.+.++|||+...+.+          
T Consensus       319 e~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi-~rmtgH-q~lVn~V~fSPd~r~IASaS----------  386 (480)
T KOG0271|consen  319 EEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPI-TRMTGH-QALVNHVSFSPDGRYIASAS----------  386 (480)
T ss_pred             HHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccch-hhhhch-hhheeeEEECCCccEEEEee----------
Confidence                            23334443333 233333322 1111 111221 24789999999998544433          


Q ss_pred             ecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520          190 LDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPD  266 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~  266 (370)
                             .+..|-.+|..+|+.-..+.+ .....-++++.|.+ |+|+.+..  |.+|++...+      +...+||..|
T Consensus       387 -------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tkK------l~~DLpGh~D  452 (480)
T KOG0271|consen  387 -------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTKK------LKQDLPGHAD  452 (480)
T ss_pred             -------cccceeeeeCCCcchhhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeeee------ecccCCCCCc
Confidence                   345677888888876433332 33446789999998 77777665  8888875432      2235777666


Q ss_pred             cee-E--CCCCCEEEEE
Q 017520          267 NIN-L--APDGTFWIAI  280 (370)
Q Consensus       267 ~i~-~--d~~G~lwv~~  280 (370)
                      .+. +  .+||..-++.
T Consensus       453 EVf~vDwspDG~rV~sg  469 (480)
T KOG0271|consen  453 EVFAVDWSPDGQRVASG  469 (480)
T ss_pred             eEEEEEecCCCceeecC
Confidence            643 3  5788766654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=96.91  E-value=0.11  Score=47.44  Aligned_cols=150  Identities=15%  Similarity=0.101  Sum_probs=87.8

Q ss_pred             cCCCcCCCcceEEcCCCcEEEEe--cCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCC-cEEEEeCCCceEEEc-CC
Q 017520           74 GEGSVNHPEDASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEG-HLIICDNANGLHKVS-ED  146 (370)
Q Consensus        74 ~~~~~~~P~~i~~d~~G~l~v~~--~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~  146 (370)
                      ..|.+.=-+++++|+. +=|+.+  .|+.|-.||  +|.++.-.. ...... ++++++-- .|+-+..+..|-++| +.
T Consensus       147 i~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~  224 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEY  224 (460)
T ss_pred             hhhccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechh
Confidence            3455556789999985 455544  777788888  777654332 233455 88887543 344444445566677 43


Q ss_pred             C--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NG  223 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~g  223 (370)
                      .  ++.+    .| .+..+..|+..|.-.+.++.+.                 +..+..+|..+........+...| +.
T Consensus       225 nkvIR~Y----hG-HlS~V~~L~lhPTldvl~t~gr-----------------Dst~RvWDiRtr~~V~~l~GH~~~V~~  282 (460)
T KOG0285|consen  225 NKVIRHY----HG-HLSGVYCLDLHPTLDVLVTGGR-----------------DSTIRVWDIRTRASVHVLSGHTNPVAS  282 (460)
T ss_pred             hhhHHHh----cc-ccceeEEEeccccceeEEecCC-----------------cceEEEeeecccceEEEecCCCCccee
Confidence            3  4433    22 1346777888777777777542                 234556676665443344444444 33


Q ss_pred             eEEcc-CCCEEEEEeCCc-EEEEEeCC
Q 017520          224 VALSR-DEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       224 i~~~~-dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      +...+ |++ +|-+.... |..+|+.-
T Consensus       283 V~~~~~dpq-vit~S~D~tvrlWDl~a  308 (460)
T KOG0285|consen  283 VMCQPTDPQ-VITGSHDSTVRLWDLRA  308 (460)
T ss_pred             EEeecCCCc-eEEecCCceEEEeeecc
Confidence            43333 555 77777766 77787653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.06  Score=50.56  Aligned_cols=145  Identities=19%  Similarity=0.106  Sum_probs=86.7

Q ss_pred             cceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCCcEEEEeCCCceEEEc-C--------CC-
Q 017520           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-E--------DG-  147 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~--------~g-  147 (370)
                      .+++-+++|+..++. ..|.||.|.  +|+.-.+.. .-.... .|.|..||.++++....|.+.+. -        ++ 
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~  163 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS  163 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence            456667889777666 788999998  787433222 222234 89999999988877665543332 1        11 


Q ss_pred             eEEEEeecCCcccccccceEEcCCC---cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccce
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV  224 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi  224 (370)
                      ...+. .+.+.. -.+.++.++..|   ++|-+  +                .+..+..||...+.+-.-..--..++.+
T Consensus       164 ~~p~~-~f~~Ht-lsITDl~ig~Gg~~~rl~Ta--S----------------~D~t~k~wdlS~g~LLlti~fp~si~av  223 (476)
T KOG0646|consen  164 VKPLH-IFSDHT-LSITDLQIGSGGTNARLYTA--S----------------EDRTIKLWDLSLGVLLLTITFPSSIKAV  223 (476)
T ss_pred             cccee-eeccCc-ceeEEEEecCCCccceEEEe--c----------------CCceEEEEEeccceeeEEEecCCcceeE
Confidence            11100 011111 145566666544   33322  1                3456777887766543322223456789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeC
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~  247 (370)
                      ++||-++.+|+....+ |+..++-
T Consensus       224 ~lDpae~~~yiGt~~G~I~~~~~~  247 (476)
T KOG0646|consen  224 ALDPAERVVYIGTEEGKIFQNLLF  247 (476)
T ss_pred             EEcccccEEEecCCcceEEeeehh
Confidence            9999999999999888 7776653

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=96.80  E-value=0.26  Score=47.16  Aligned_cols=189  Identities=16%  Similarity=0.186  Sum_probs=97.8

Q ss_pred             CcceEEcCCC-cEEEEecCCeEEEEe-CC---e---EEEEEecCC-CceeceEEcCCCcE-EEEeCCCceEEEcCCCeE-
Q 017520           81 PEDASMDKNG-VIYTATRDGWIKRLQ-DG---T---WVNWKFIDS-QTLVGLTSTKEGHL-IICDNANGLHKVSEDGVE-  149 (370)
Q Consensus        81 P~~i~~d~~G-~l~v~~~~g~I~~~~-~g---~---~~~~~~~~~-~p~~gl~~d~~G~L-~v~~~~~gi~~~~~~g~~-  149 (370)
                      ...+++|+.| +++.|+-+..|..|| .|   .   ++.+.+... ... .+.+.+.|+. ++.........+|++|++ 
T Consensus       170 Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~-sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~  248 (641)
T KOG0772|consen  170 VSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQIN-SLQYSVTGDQILVVSGSAQAKLLDRDGFEI  248 (641)
T ss_pred             EEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccc-eeeecCCCCeEEEEecCcceeEEccCCcee
Confidence            4558889888 677888888899998 44   2   233333333 345 8888888864 444433456667788822 


Q ss_pred             -EEEee---------cCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEec
Q 017520          150 -NFLSY---------VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVAD  216 (370)
Q Consensus       150 -~~~~~---------~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~~  216 (370)
                       .+...         ..| ....++...+.|+. ..+++.+                 .+|.+..||.  ...+.+++.+
T Consensus       249 ~e~~KGDQYI~Dm~nTKG-Hia~lt~g~whP~~k~~FlT~s-----------------~DgtlRiWdv~~~k~q~qVik~  310 (641)
T KOG0772|consen  249 VEFSKGDQYIRDMYNTKG-HIAELTCGCWHPDNKEEFLTCS-----------------YDGTLRIWDVNNTKSQLQVIKT  310 (641)
T ss_pred             eeeeccchhhhhhhccCC-ceeeeeccccccCcccceEEec-----------------CCCcEEEEecCCchhheeEEee
Confidence             22211         001 01122333444543 3445543                 2344444443  2234444432


Q ss_pred             C----CC-CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCce-eeecc-CCCC-CCCceeECCCCCEEEEEecCc-hh
Q 017520          217 G----FY-FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKL-ETFAE-NLPG-APDNINLAPDGTFWIAIIKLD-AR  286 (370)
Q Consensus       217 ~----~~-~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~-~~~~~-~~~g-~p~~i~~d~~G~lwv~~~~~~-~~  286 (370)
                      .    .. .+...+|++||+.+-.+-..+ |..|+. +...... ..+-+ ..+| -..-|.++.||++..+-.... ..
T Consensus       311 k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~-~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK  389 (641)
T KOG0772|consen  311 KPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK-GSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK  389 (641)
T ss_pred             ccCCCcccCceeeecCCCcchhhhcccCCceeeeec-CCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence            2    22 346678999999543333444 666664 2211111 11111 1221 345688999999888754332 34


Q ss_pred             HHH
Q 017520          287 RMK  289 (370)
Q Consensus       287 ~~~  289 (370)
                      +||
T Consensus       390 vWD  392 (641)
T KOG0772|consen  390 VWD  392 (641)
T ss_pred             eee
Confidence            444

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=96.80  E-value=0.08  Score=47.14  Aligned_cols=143  Identities=17%  Similarity=0.219  Sum_probs=91.9

Q ss_pred             cceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEE---EecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEE
Q 017520           82 EDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNW---KFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFL  152 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~---~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~  152 (370)
                      ..+.++|+|..+++. .|..|+-|+ .|.-+.+   ....+... ++.+.+|++..+ +..+..++.+| ++|  .+.+.
T Consensus        51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k  129 (338)
T KOG0265|consen   51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK  129 (338)
T ss_pred             EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhc
Confidence            346778899877665 788899999 5544333   23456677 888999997555 45557788888 777  33221


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      ..     ..++|.+.....|-..+...+                .++.+-.+|..++........-..-..+.|..++..
T Consensus       130 ~h-----~~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~q  188 (338)
T KOG0265|consen  130 GH-----TSFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQ  188 (338)
T ss_pred             cc-----cceeeecCccccCCeEEEecC----------------CCceEEEEeecccchhhccccceeEEEEEecccccc
Confidence            11     246777776666766666544                567888888865544333333333456666666666


Q ss_pred             EEEEeCCc-EEEEEe
Q 017520          233 VVVCESWK-CRKYWL  246 (370)
Q Consensus       233 l~v~~~~~-l~~~~~  246 (370)
                      ++.+.-++ |..+|+
T Consensus       189 v~sggIdn~ikvWd~  203 (338)
T KOG0265|consen  189 VISGGIDNDIKVWDL  203 (338)
T ss_pred             eeeccccCceeeecc
Confidence            66666666 777776

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=96.79  E-value=0.0026  Score=35.72  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.4

Q ss_pred             ccccceEEcCCCcEEEEeC
Q 017520          161 RFANDVVEASDGSLYFTVS  179 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~  179 (370)
                      ..|.+++++++|+||++|.
T Consensus         2 ~~P~gvav~~~g~i~VaD~   20 (28)
T PF01436_consen    2 NYPHGVAVDSDGNIYVADS   20 (28)
T ss_dssp             SSEEEEEEETTSEEEEEEC
T ss_pred             cCCcEEEEeCCCCEEEEEC
Confidence            5789999999999999996

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PTZ00420 coronin; Provisional

Probab=96.79  E-value=0.22  Score=49.71  Aligned_cols=154  Identities=10%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             CCcceEEcCCCcEE--EEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEEE
Q 017520           80 HPEDASMDKNGVIY--TATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~--v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~~  151 (370)
                      ...++++.+++...  .++.+|.|..|+  +++...-........ ++.++++|.++++.... .|..+| +++  +..+
T Consensus       127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            35678888877533  455789999999  454322122334566 89999999988866443 466666 566  3333


Q ss_pred             EeecCCcc-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecCCCC-ccc--eEE
Q 017520          152 LSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYF-ANG--VAL  226 (370)
Q Consensus       152 ~~~~~g~~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~~~~-p~g--i~~  226 (370)
                      ... .+.. ...+....+.+++..+++.+...             .....|..||... +...... .+.. +..  ..+
T Consensus       206 ~gH-~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~-~ld~~~~~L~p~~  270 (568)
T PTZ00420        206 HIH-DGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTM-SIDNASAPLIPHY  270 (568)
T ss_pred             ecc-cCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEE-EecCCccceEEee
Confidence            211 1110 01111112346777666644210             0123578888763 2211111 1111 222  245


Q ss_pred             ccCCCEEEEEeCCc--EEEEEeCCC
Q 017520          227 SRDEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       227 ~~dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      +++...+|++..+.  |+.|++..+
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEccCC
Confidence            56544477776554  888887543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.77  E-value=0.047  Score=51.06  Aligned_cols=142  Identities=16%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             eEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCCCEEEEEeCCc-EE
Q 017520          166 VVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVVCESWK-CR  242 (370)
Q Consensus       166 l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg~~l~v~~~~~-l~  242 (370)
                      =++.+|| +|.|+...               .....+|.+|.++++.+.+..+- ....|..++++.+.+|....++ |+
T Consensus        41 ~~ft~dG~kllF~s~~---------------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~  105 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDF---------------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLR  105 (386)
T ss_dssp             --B-TTS-EEEEEE-T---------------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEE
T ss_pred             CCcCCCCCEEEEEecc---------------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEE
Confidence            3557788 45555321               24568999999999988876543 3345788889888876655555 99


Q ss_pred             EEEeCCCCCCceeeeccCCCCCC--CceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEE
Q 017520          243 KYWLKGERKGKLETFAENLPGAP--DNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHL  320 (370)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~g~p--~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v  320 (370)
                      ++++++.+  +...+. ...+.-  .....++|+..++++...+. ....+.++..+++++.           ..++..|
T Consensus       106 ~vdL~T~e--~~~vy~-~p~~~~g~gt~v~n~d~t~~~g~e~~~~-d~~~l~~~~~f~e~~~-----------a~p~~~i  170 (386)
T PF14583_consen  106 RVDLDTLE--ERVVYE-VPDDWKGYGTWVANSDCTKLVGIEISRE-DWKPLTKWKGFREFYE-----------ARPHCRI  170 (386)
T ss_dssp             EEETTT----EEEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGG-G-----SHHHHHHHHH-----------C---EEE
T ss_pred             EEECCcCc--EEEEEE-CCcccccccceeeCCCccEEEEEEEeeh-hccCccccHHHHHHHh-----------hCCCceE
Confidence            99998753  222222 111111  22345788999888765332 2233345666777666           5556678


Q ss_pred             EEECC-CCcEEEEEeCCC
Q 017520          321 IHVAE-DGTIIRNLVDPT  337 (370)
Q Consensus       321 ~~~~~-~g~~~~~~~~~~  337 (370)
                      +.+|. .|+....+.+..
T Consensus       171 ~~idl~tG~~~~v~~~~~  188 (386)
T PF14583_consen  171 FTIDLKTGERKVVFEDTD  188 (386)
T ss_dssp             EEEETTT--EEEEEEESS
T ss_pred             EEEECCCCceeEEEecCc
Confidence            88885 466655555543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.75  E-value=0.15  Score=50.93  Aligned_cols=143  Identities=15%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520          115 IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       115 ~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      ..+..+ |..|.|+.++++.....+-.|+. -+-...++. +.|. ..-+.++.+.|.|.-|.+- +             
T Consensus       450 H~GPVy-g~sFsPd~rfLlScSED~svRLWsl~t~s~~V~-y~GH-~~PVwdV~F~P~GyYFata-s-------------  512 (707)
T KOG0263|consen  450 HSGPVY-GCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVI-YKGH-LAPVWDVQFAPRGYYFATA-S-------------  512 (707)
T ss_pred             CCCcee-eeeecccccceeeccCCcceeeeecccceeEEE-ecCC-CcceeeEEecCCceEEEec-C-------------
Confidence            344567 89999999988876665555555 222222211 1221 1235678899988755553 3             


Q ss_pred             ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520          194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP  272 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  272 (370)
                       +....+||-.|-. ...+.++..+.-...+.|+|+.+.+.-..... |..||+..+  ..++.|. ..-+-...+++++
T Consensus       513 -~D~tArLWs~d~~-~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~-GH~~~V~al~~Sp  587 (707)
T KOG0263|consen  513 -HDQTARLWSTDHN-KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFT-GHKGPVTALAFSP  587 (707)
T ss_pred             -CCceeeeeecccC-CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC--cEEEEec-CCCCceEEEEEcC
Confidence             1245577766652 45566666666677799999988444333334 888887643  3456664 3334456688899


Q ss_pred             CCCEEEE
Q 017520          273 DGTFWIA  279 (370)
Q Consensus       273 ~G~lwv~  279 (370)
                      +|++.++
T Consensus       588 ~Gr~LaS  594 (707)
T KOG0263|consen  588 CGRYLAS  594 (707)
T ss_pred             CCceEee
Confidence            8865444

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.73  E-value=0.0047  Score=53.39  Aligned_cols=123  Identities=22%  Similarity=0.248  Sum_probs=67.7

Q ss_pred             ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe---CCe-------EEEE-EecCCCceeceEEcCCCcEEE
Q 017520           65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT-------WVNW-KFIDSQTLVGLTSTKEGHLII  133 (370)
Q Consensus        65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~---~g~-------~~~~-~~~~~~p~~gl~~d~~G~L~v  133 (370)
                      +.....++|..+....=..|++|+.|.||.-+.+|.|+|..   ++.       -+.+ ...-+... .+.++++|-||+
T Consensus        67 ~~~~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvLY~  145 (229)
T PF14517_consen   67 TWDSGSKQIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVLYA  145 (229)
T ss_dssp             -HHHH-EEEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-EEE
T ss_pred             cccccCcccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccEEE
Confidence            33455677877744444589999999999999999999987   221       1222 11222344 788999999999


Q ss_pred             EeCCCceEEEc-CCC-----e--EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520          134 CDNANGLHKVS-EDG-----V--ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (370)
Q Consensus       134 ~~~~~gi~~~~-~~g-----~--~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  205 (370)
                      .+.+..+++.. +++     .  ..++   .+........|...++|+||..++                  +|.|||+.
T Consensus       146 i~~dg~~~~~~~p~~~~~~W~~~s~~v---~~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~  204 (229)
T PF14517_consen  146 ITPDGRLYRRYRPDGGSDRWLSGSGLV---GGGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGR  204 (229)
T ss_dssp             EETTE-EEEE---SSTT--HHHH-EEE---ESSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES
T ss_pred             EcCCCceEEeCCCCCCCCcccccccee---ccCCcccceEEeeCCCCcEEEEec------------------CCEEeccC
Confidence            98655577774 322     1  1121   122223456788889999998854                  48899988


Q ss_pred             CCCC
Q 017520          206 PSSN  209 (370)
Q Consensus       206 ~~t~  209 (370)
                      +.+.
T Consensus       205 ~p~~  208 (229)
T PF14517_consen  205 PPQN  208 (229)
T ss_dssp             ---S
T ss_pred             Cccc
Confidence            7654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.72  E-value=0.091  Score=44.94  Aligned_cols=127  Identities=14%  Similarity=0.134  Sum_probs=74.5

Q ss_pred             CCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcE-EEEeCCCCCCCccceecccccCCCceEEE
Q 017520          127 KEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLK  203 (370)
Q Consensus       127 ~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~l~~  203 (370)
                      ..+.-|.+.  ..+++++ ++. ...+.....    ..+.+++..|+|+- .+....                ....+..
T Consensus        30 ~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~----~~I~~~~WsP~g~~favi~g~----------------~~~~v~l   87 (194)
T PF08662_consen   30 KSGKSYYGE--FELFYLNEKNIPVESIELKKE----GPIHDVAWSPNGNEFAVIYGS----------------MPAKVTL   87 (194)
T ss_pred             cCcceEEee--EEEEEEecCCCccceeeccCC----CceEEEEECcCCCEEEEEEcc----------------CCcccEE
Confidence            344444433  2577776 333 333321111    24789999999964 344221                2236777


Q ss_pred             EeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE
Q 017520          204 YDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA  279 (370)
Q Consensus       204 ~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~  279 (370)
                      ||.+...+..+.  -...|.+.++|+|+.+.++..++    |..||.+..     +.+..........++.+++|++.++
T Consensus        88 yd~~~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~-----~~i~~~~~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVKGKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK-----KKISTFEHSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCcccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC-----EEeeccccCcEEEEEEcCCCCEEEE
Confidence            887644444332  23557899999999888887543    788886532     2222112223556888999998887


Q ss_pred             Eec
Q 017520          280 IIK  282 (370)
Q Consensus       280 ~~~  282 (370)
                      ...
T Consensus       161 a~t  163 (194)
T PF08662_consen  161 ATT  163 (194)
T ss_pred             EEe
Confidence            643

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.71  E-value=0.041  Score=47.70  Aligned_cols=160  Identities=17%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe---CCe------EEEEEec-CCCceeceEEcCCCcEEEE
Q 017520           65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ---DGT------WVNWKFI-DSQTLVGLTSTKEGHLIIC  134 (370)
Q Consensus        65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~---~g~------~~~~~~~-~~~p~~gl~~d~~G~L~v~  134 (370)
                      +.+..+.++..| +.+=..|+..++|.||....+ .+++..   .+.      -+.+... -++-. .|.+++.|.||..
T Consensus        21 n~~~~a~~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~LYaV   97 (229)
T PF14517_consen   21 NWSDRAITIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVLYAV   97 (229)
T ss_dssp             -HHHHSEEEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-EEEE
T ss_pred             CccchhhhcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccEEEe
Confidence            345566777665 667788999999999988854 788883   221      2233222 12233 6899999999998


Q ss_pred             eCCCceEEEc-C-CC-eEEE---EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE-eCC
Q 017520          135 DNANGLHKVS-E-DG-VENF---LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY-DPS  207 (370)
Q Consensus       135 ~~~~gi~~~~-~-~g-~~~~---~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~-d~~  207 (370)
                      +....+++.. + ++ ....   .....+..-+....|-.+++|.||.-+.                  ++++++. .|+
T Consensus        98 ~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~------------------dg~~~~~~~p~  159 (229)
T PF14517_consen   98 TPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP------------------DGRLYRRYRPD  159 (229)
T ss_dssp             ETT-EEEEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET------------------TE-EEEE---S
T ss_pred             ccccceeeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEcC------------------CCceEEeCCCC
Confidence            8766788887 2 33 1111   1111112223456688899999999864                  3578877 343


Q ss_pred             CCeE-------EEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          208 SNIT-------TLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       208 t~~~-------~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      ...-       .+...+...+.-|.+++++. ||....++ |+|+..
T Consensus       160 ~~~~~W~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~~~G~lyr~~~  205 (229)
T PF14517_consen  160 GGSDRWLSGSGLVGGGGWDSFHFIFFSPDGN-LWAVKSNGKLYRGRP  205 (229)
T ss_dssp             STT--HHHH-EEEESSSGGGEEEEEE-TTS--EEEE-ETTEEEEES-
T ss_pred             CCCCccccccceeccCCcccceEEeeCCCCc-EEEEecCCEEeccCC
Confidence            2211       11112333456788889988 67767766 888754

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.67  E-value=0.31  Score=42.18  Aligned_cols=172  Identities=12%  Similarity=0.096  Sum_probs=96.7

Q ss_pred             cceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEe-CCCceEEEc-CCC--eEEEEe
Q 017520           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG--VENFLS  153 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g--~~~~~~  153 (370)
                      ..+-+.-+|+--++. .+..|.-|+  .|. +++|...+...+ ..+...|..=+.+. .+..++.+| .+|  .+.+..
T Consensus        21 ~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVl-D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg   99 (307)
T KOG0316|consen   21 RAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVL-DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRG   99 (307)
T ss_pred             EEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceee-eccccccccccccCCCCceEEEEEcccCeeeeeccc
Confidence            445556678655554 455566666  555 566666666666 77776666544433 334577777 777  444322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCCCccceEEccCC
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRDE  230 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~~p~gi~~~~dg  230 (370)
                      .     ...+|.+.+..+..+.++-+                 .+..+..||=.+...+++   .+.......  ++-.+
T Consensus       100 H-----~aqVNtV~fNeesSVv~Sgs-----------------fD~s~r~wDCRS~s~ePiQildea~D~V~S--i~v~~  155 (307)
T KOG0316|consen  100 H-----LAQVNTVRFNEESSVVASGS-----------------FDSSVRLWDCRSRSFEPIQILDEAKDGVSS--IDVAE  155 (307)
T ss_pred             c-----cceeeEEEecCcceEEEecc-----------------ccceeEEEEcccCCCCccchhhhhcCceeE--EEecc
Confidence            1     24688999988888877744                 234566777554444332   111112222  33334


Q ss_pred             CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecC
Q 017520          231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~  283 (370)
                      ..++.....+ +.+||+..+   +..  .+.......-+.+++||+ ..++...+
T Consensus       156 heIvaGS~DGtvRtydiR~G---~l~--sDy~g~pit~vs~s~d~nc~La~~l~s  205 (307)
T KOG0316|consen  156 HEIVAGSVDGTVRTYDIRKG---TLS--SDYFGHPITSVSFSKDGNCSLASSLDS  205 (307)
T ss_pred             cEEEeeccCCcEEEEEeecc---eee--hhhcCCcceeEEecCCCCEEEEeeccc
Confidence            4355555555 999998543   221  122222245588999998 44555544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.67  E-value=0.13  Score=47.87  Aligned_cols=147  Identities=12%  Similarity=0.064  Sum_probs=89.9

Q ss_pred             ecCCCceeceEEcCCCcEEEEeCC---CceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520          114 FIDSQTLVGLTSTKEGHLIICDNA---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       114 ~~~~~p~~gl~~d~~G~L~v~~~~---~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~  189 (370)
                      ...+... =+.|+++|+-..+...   ..|+.+..++ ++.... ..|. ...+..+.++||.+-.++.+          
T Consensus       222 ~htdEVW-fl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~t-lvgh-~~~V~yi~wSPDdryLlaCg----------  288 (519)
T KOG0293|consen  222 DHTDEVW-FLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKT-LVGH-SQPVSYIMWSPDDRYLLACG----------  288 (519)
T ss_pred             hCCCcEE-EEEEcCCCeeEeeccCCceEEEEEEecCcceeeeee-eecc-cCceEEEEECCCCCeEEecC----------
Confidence            3455566 6778877775554332   1455555555 433222 1222 13456788999988777754          


Q ss_pred             ecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520          190 LDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPD  266 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~  266 (370)
                             ....+..+|.+++.........  ..+...++.|||..++.....+ +..++++|...+..+..-  .| ...
T Consensus       289 -------~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr--~~-~v~  358 (519)
T KOG0293|consen  289 -------FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR--DP-KVH  358 (519)
T ss_pred             -------chHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--cc-eeE
Confidence                   2345888999888765544322  4456789999999777777777 999999987544433221  11 245


Q ss_pred             ceeECCCCC-EEEEEecC
Q 017520          267 NINLAPDGT-FWIAIIKL  283 (370)
Q Consensus       267 ~i~~d~~G~-lwv~~~~~  283 (370)
                      .+++..||. +++.+...
T Consensus       359 dlait~Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  359 DLAITYDGKYVLLVTVDK  376 (519)
T ss_pred             EEEEcCCCcEEEEEeccc
Confidence            688888996 44444443

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.66  E-value=0.88  Score=45.87  Aligned_cols=220  Identities=13%  Similarity=0.087  Sum_probs=112.6

Q ss_pred             cEEEEecCCeEEEEeCCeEEEEEecC---CCceeceEEcCCCcE--EEEe-------CCCceEEEcCCC-eEEEEeecCC
Q 017520           91 VIYTATRDGWIKRLQDGTWVNWKFID---SQTLVGLTSTKEGHL--IICD-------NANGLHKVSEDG-VENFLSYVNG  157 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~~g~~~~~~~~~---~~p~~gl~~d~~G~L--~v~~-------~~~gi~~~~~~g-~~~~~~~~~g  157 (370)
                      .+|+-. +|.+.+++.+..+......   ..+. ..++++||+.  |+..       ....|+.++..+ .+.+.   .+
T Consensus       322 ~~~~v~-~G~l~~~~~~~~~pv~g~~g~~~~vs-spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt---~g  396 (591)
T PRK13616        322 GLHALV-DGSLVSVDGQGVTPVPGAFGQMGNIT-SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVL---EG  396 (591)
T ss_pred             cceEEE-CCeEEEecCCCeeeCCCccccccCcc-cceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeee---cC
Confidence            466444 7788887744433332221   2344 6778888863  4431       112455555333 33332   22


Q ss_pred             cccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520          158 SKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       158 ~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~  236 (370)
                      ..   ...-.+++|| .||+......      ..-+......+.++.++.+++....  .--..+..+.+++||..+.+.
T Consensus       397 ~~---~t~PsWspDG~~lw~v~dg~~------~~~v~~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        397 HS---LTRPSWSLDADAVWVVVDGNT------VVRVIRDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             CC---CCCceECCCCCceEEEecCcc------eEEEeccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEE
Confidence            22   2334888995 6888843211      0001112244677777666554432  112347789999999988887


Q ss_pred             eCCcEEE---EEeCCCC--CCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520          237 ESWKCRK---YWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  311 (370)
Q Consensus       237 ~~~~l~~---~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (370)
                      ..+.|+.   ....++.  ......+...+...+..+..-.++.|.++...+.                           
T Consensus       466 ~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~---------------------------  518 (591)
T PRK13616        466 IGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE---------------------------  518 (591)
T ss_pred             ECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCC---------------------------
Confidence            7555544   2222221  1111112222222235566677788887755431                           


Q ss_pred             ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520          312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       312 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                            ..+..++.+|.....+  +.+.....+..+....+.||+.+-++
T Consensus       519 ------~~v~~v~vDG~~~~~~--~~~n~~~~v~~vaa~~~~iyv~~~~g  560 (591)
T PRK13616        519 ------HPVWYVNLDGSNSDAL--PSRNLSAPVVAVAASPSTVYVTDARA  560 (591)
T ss_pred             ------CceEEEecCCcccccc--CCCCccCceEEEecCCceEEEEcCCc
Confidence                  2356677777665533  23333344444544456788775554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=96.66  E-value=0.26  Score=42.09  Aligned_cols=127  Identities=16%  Similarity=0.157  Sum_probs=76.3

Q ss_pred             cCCCcEEEEecCCeEEEEe--CCeEEEEEe-cCCCceeceEEcCCCc-EEEEeC--CCceEEEcCCC--eEEEEeecCCc
Q 017520           87 DKNGVIYTATRDGWIKRLQ--DGTWVNWKF-IDSQTLVGLTSTKEGH-LIICDN--ANGLHKVSEDG--VENFLSYVNGS  158 (370)
Q Consensus        87 d~~G~l~v~~~~g~I~~~~--~g~~~~~~~-~~~~p~~gl~~d~~G~-L~v~~~--~~gi~~~~~~g--~~~~~~~~~g~  158 (370)
                      |..+.-|.+.  -.|++++  +.....+.. ..+... .++..|+|+ +.+...  ...+..++..+  +..+    .  
T Consensus        29 ~~~~ks~~~~--~~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~----~--   99 (194)
T PF08662_consen   29 DKSGKSYYGE--FELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF----G--   99 (194)
T ss_pred             ccCcceEEee--EEEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEee----c--
Confidence            3456666654  3588887  333444322 223456 899999996 444432  23466666434  2222    1  


Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                       ....|.+.++|+|++.+....              ....|.|..||.++.+... .........++++|||+++..+.+
T Consensus       100 -~~~~n~i~wsP~G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~-~~~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  100 -TQPRNTISWSPDGRFLVLAGF--------------GNLNGDLEFWDVRKKKKIS-TFEHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             -CCCceEEEECCCCCEEEEEEc--------------cCCCcEEEEEECCCCEEee-ccccCcEEEEEEcCCCCEEEEEEe
Confidence             135678999999986666431              0134678889987444322 223345678999999998877765

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=96.62  E-value=0.44  Score=41.96  Aligned_cols=181  Identities=9%  Similarity=0.033  Sum_probs=107.6

Q ss_pred             ceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC-eEEEEeec
Q 017520           83 DASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g-~~~~~~~~  155 (370)
                      .|-+..+|.|.++. .+.....|-  +|+ +-++....+..+ ++.+|.+-...+. ..++-+..+| ++| ......  
T Consensus        15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW-~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--   91 (327)
T KOG0643|consen   15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVW-CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--   91 (327)
T ss_pred             eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEE-EEEecCCcceeeeccccceeEEEEcCCCcEEEEee--
Confidence            35566788888776 444444443  664 566766777788 8888877765554 4445566666 788 221111  


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-------CCe-EEEEecCCCCccceEEc
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-------SNI-TTLVADGFYFANGVALS  227 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-------t~~-~~~~~~~~~~p~gi~~~  227 (370)
                      .+   ..+..+.++.+|++.+......            ....+.|..+|..       +++ ..++...-..++...|+
T Consensus        92 ~~---~~Vk~~~F~~~gn~~l~~tD~~------------mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   92 TN---SPVKRVDFSFGGNLILASTDKQ------------MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             cC---CeeEEEeeccCCcEEEEEehhh------------cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            11   2456788899997544422100            0112344455432       122 23333344567778899


Q ss_pred             cCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          228 RDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       228 ~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +-++.++.+...+ |.+||...+.. ..+. .+......++|.+.+|..++|+....
T Consensus       157 ~l~~~ii~Ghe~G~is~~da~~g~~-~v~s-~~~h~~~Ind~q~s~d~T~FiT~s~D  211 (327)
T KOG0643|consen  157 PLGETIIAGHEDGSISIYDARTGKE-LVDS-DEEHSSKINDLQFSRDRTYFITGSKD  211 (327)
T ss_pred             ccCCEEEEecCCCcEEEEEcccCce-eeec-hhhhccccccccccCCcceEEecccC
Confidence            9999888877777 99999865311 1111 11222357889999999999997553

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.58  E-value=0.16  Score=49.37  Aligned_cols=123  Identities=14%  Similarity=0.245  Sum_probs=75.2

Q ss_pred             cccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-------eEEEEec--------C----
Q 017520          158 SKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-------ITTLVAD--------G----  217 (370)
Q Consensus       158 ~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-------~~~~~~~--------~----  217 (370)
                      .++..+..+++.+. |++|++..+..-..+ -...-......|.|+||-+.++       +++.+..        .    
T Consensus       414 T~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~-~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~  492 (616)
T COG3211         414 TPMDRPEWIAVNPGTGEVYFTLTNNGKRSD-DAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASA  492 (616)
T ss_pred             ccccCccceeecCCcceEEEEeCCCCcccc-ccCCCcccccccceEEEecCCCCccCccceeeeeeecCCcccccccccc
Confidence            35567888999874 689999764211100 0001112234578999987655       4444421        1    


Q ss_pred             ------CCCccceEEccCCCEEEEEeCCc----------EEEEEeCCCCCCceeeeccCCC-CCCCceeECCCC-CEEEE
Q 017520          218 ------FYFANGVALSRDEDYVVVCESWK----------CRKYWLKGERKGKLETFAENLP-GAPDNINLAPDG-TFWIA  279 (370)
Q Consensus       218 ------~~~p~gi~~~~dg~~l~v~~~~~----------l~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G-~lwv~  279 (370)
                            +..|.++++++.|+ ||+++.+.          +......+++.++.+.|..... ....|.++.+|| .++|+
T Consensus       493 ~~~~~~f~~PDnl~fD~~Gr-LWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         493 NINANWFNSPDNLAFDPWGR-LWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             CcccccccCCCceEECCCCC-EEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence                  34589999999999 77766432          3434445566777777753211 245678999999 59998


Q ss_pred             Eec
Q 017520          280 IIK  282 (370)
Q Consensus       280 ~~~  282 (370)
                      ...
T Consensus       572 vQH  574 (616)
T COG3211         572 VQH  574 (616)
T ss_pred             ecC
Confidence            754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.53  E-value=0.3  Score=44.97  Aligned_cols=108  Identities=16%  Similarity=0.207  Sum_probs=62.0

Q ss_pred             CcEEEEeCC-----CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCce
Q 017520          129 GHLIICDNA-----NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (370)
Q Consensus       129 G~L~v~~~~-----~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~  200 (370)
                      .++||.|..     .+++.+| .++ +.-..+  .    .+.-.+++++|| .+|+++.-        ......+..+..
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~--~----g~~~~~~~spdgk~~y~a~T~--------~sR~~rG~RtDv   68 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMID--T----GFLGNVALSPDGKTIYVAETF--------YSRGTRGERTDV   68 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEE--E----ESSEEEEE-TTSSEEEEEEEE--------EEETTEEEEEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEee--c----ccCCceeECCCCCEEEEEEEE--------EeccccccceeE
Confidence            357777642     2577777 445 221111  1    133347888998 47877542        112222333456


Q ss_pred             EEEEeCCCCeEE--EEecC------CCCccceEEccCCCEEEEEeCCc---EEEEEeCCCC
Q 017520          201 LLKYDPSSNITT--LVADG------FYFANGVALSRDEDYVVVCESWK---CRKYWLKGER  250 (370)
Q Consensus       201 l~~~d~~t~~~~--~~~~~------~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~  250 (370)
                      |-.||++|-..+  +....      ...++-.+++.||+++||.+..-   |.++|+...+
T Consensus        69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k  129 (342)
T PF06433_consen   69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK  129 (342)
T ss_dssp             EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred             EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc
Confidence            888998765432  23222      34567889999999999998764   9999987653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=96.49  E-value=0.47  Score=44.49  Aligned_cols=139  Identities=12%  Similarity=0.115  Sum_probs=80.1

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCc
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG  199 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  199 (370)
                      +.+|.|||.|+.+....|++++.  +.+ ... ..++|. -.-+..+.|..+|.-.++..                 .++
T Consensus       352 s~~fHpDgLifgtgt~d~~vkiwdlks~-~~~-a~Fpgh-t~~vk~i~FsENGY~Lat~a-----------------dd~  411 (506)
T KOG0289|consen  352 SAAFHPDGLIFGTGTPDGVVKIWDLKSQ-TNV-AKFPGH-TGPVKAISFSENGYWLATAA-----------------DDG  411 (506)
T ss_pred             EeeEcCCceEEeccCCCceEEEEEcCCc-ccc-ccCCCC-CCceeEEEeccCceEEEEEe-----------------cCC
Confidence            78999999999987777888876  333 111 122332 23567889998887555532                 345


Q ss_pred             eEEEEeCCCC-eEEE-EecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          200 QLLKYDPSSN-ITTL-VADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       200 ~l~~~d~~t~-~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      .|..||...- .+.. ........+.+.||..|..|..+...- |+.+.-....-.....+. ...|..+++.+.....+
T Consensus       412 ~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~-~~sg~st~v~Fg~~aq~  490 (506)
T KOG0289|consen  412 SVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELA-DHSGLSTGVRFGEHAQY  490 (506)
T ss_pred             eEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhh-hcccccceeeecccceE
Confidence            5888887421 2222 223444678899999998766663221 555543222222223332 23356777888765544


Q ss_pred             EEEEe
Q 017520          277 WIAII  281 (370)
Q Consensus       277 wv~~~  281 (370)
                      ...+.
T Consensus       491 l~s~s  495 (506)
T KOG0289|consen  491 LASTS  495 (506)
T ss_pred             Eeecc
Confidence            44433

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=96.42  E-value=0.25  Score=46.57  Aligned_cols=202  Identities=15%  Similarity=0.121  Sum_probs=109.9

Q ss_pred             ceeceEEcCCCcEEEEe-CCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520          119 TLVGLTSTKEGHLIICD-NANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      .. +++.++.|.+.++. ..+.||.+. .+|  +..+..     ....+..|.+..||..+|+.+               
T Consensus        84 v~-al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a-----HYQ~ITcL~fs~dgs~iiTgs---------------  142 (476)
T KOG0646|consen   84 VH-ALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA-----HYQSITCLKFSDDGSHIITGS---------------  142 (476)
T ss_pred             ee-eeecCCCceEEEeecccCcEEEEEeccccHHHHHHh-----hccceeEEEEeCCCcEEEecC---------------
Confidence            45 88999999988876 345688777 778  332211     123567788999999989865               


Q ss_pred             cCCCceEEEEeCC-------CCe---EEEEecCCCCccceEEccC--CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCC
Q 017520          195 GKPHGQLLKYDPS-------SNI---TTLVADGFYFANGVALSRD--EDYVVVCESWK-CRKYWLKGERKGKLETFAENL  261 (370)
Q Consensus       195 ~~~~g~l~~~d~~-------t~~---~~~~~~~~~~p~gi~~~~d--g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~  261 (370)
                        .+|.|+.|..-       +..   ...+.+.......+.+++-  ...+|-+..++ +..|++.....  ...+  ..
T Consensus       143 --kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L--Llti--~f  216 (476)
T KOG0646|consen  143 --KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL--LLTI--TF  216 (476)
T ss_pred             --CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee--eEEE--ec
Confidence              34666665421       111   1111111111122223222  12377777777 88899876532  1111  23


Q ss_pred             CCCCCceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCc
Q 017520          262 PGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQL  340 (370)
Q Consensus       262 ~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~  340 (370)
                      |.-+..+++|+.+ .+|+|+..+..-...+           .++|..-.       .-..-.++.++..+..+....+. 
T Consensus       217 p~si~av~lDpae~~~yiGt~~G~I~~~~~-----------~~~~~~~~-------~v~~k~~~~~~t~~~~~~Gh~~~-  277 (476)
T KOG0646|consen  217 PSSIKAVALDPAERVVYIGTEEGKIFQNLL-----------FKLSGQSA-------GVNQKGRHEENTQINVLVGHENE-  277 (476)
T ss_pred             CCcceeEEEcccccEEEecCCcceEEeeeh-----------hcCCcccc-------cccccccccccceeeeeccccCC-
Confidence            4446778899877 5899987764211111           11111100       01123334566666666554432 


Q ss_pred             cccceeEE-EECCEEEEEeCCCCeEEEE
Q 017520          341 MSFVTSGL-QVDNHLYVISLTSNFIGKV  367 (370)
Q Consensus       341 ~~~~t~~~-~~~g~L~~gs~~~~~i~~~  367 (370)
                       ..+|.+. ..||+|.+.+....-+.+-
T Consensus       278 -~~ITcLais~DgtlLlSGd~dg~VcvW  304 (476)
T KOG0646|consen  278 -SAITCLAISTDGTLLLSGDEDGKVCVW  304 (476)
T ss_pred             -cceeEEEEecCccEEEeeCCCCCEEEE
Confidence             3455554 4588888777766655543

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=96.39  E-value=0.033  Score=53.92  Aligned_cols=74  Identities=16%  Similarity=0.108  Sum_probs=45.4

Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEE
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVC  236 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~  236 (370)
                      -|.+|..|++|+.|+|||.+..+.-...+...      +-..+..=++.++++..+...-  ....|.+++||++.+||.
T Consensus       498 ~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         498 WFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             cccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence            36789999999999999986531110000000      0112333345566666555432  356789999999988887


Q ss_pred             eC
Q 017520          237 ES  238 (370)
Q Consensus       237 ~~  238 (370)
                      -.
T Consensus       572 vQ  573 (616)
T COG3211         572 VQ  573 (616)
T ss_pred             ec
Confidence            64

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=96.26  E-value=0.33  Score=42.64  Aligned_cols=176  Identities=13%  Similarity=0.057  Sum_probs=102.1

Q ss_pred             ceeceEEcCCCcEEEEeCCCc-eEEEc--CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceeccc
Q 017520          119 TLVGLTSTKEGHLIICDNANG-LHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~g-i~~~~--~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      .. .+++..+|.=.+.....+ +..++  +.. .+...  ..| ...++.+++.++.. .++++.++             
T Consensus        23 v~-Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~--~~g-h~~svdql~w~~~~~d~~atas~-------------   85 (313)
T KOG1407|consen   23 VH-SVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELV--YRG-HTDSVDQLCWDPKHPDLFATASG-------------   85 (313)
T ss_pred             ce-EEEEcccCceeeecccCCceEEEEecchhhhhhhc--ccC-CCcchhhheeCCCCCcceEEecC-------------
Confidence            44 677777776555433332 22222  222 11111  111 12367889998754 67777553             


Q ss_pred             ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520          194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP  272 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  272 (370)
                          ...+.++|..+++.......-....-+.++|+|+.+.+.+... |.-+|....+....+.+.    -.-+.++...
T Consensus        86 ----dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~----~e~ne~~w~~  157 (313)
T KOG1407|consen   86 ----DKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK----FEVNEISWNN  157 (313)
T ss_pred             ----CceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhccc----ceeeeeeecC
Confidence                3567888877666655444445566789999999888888877 877876544332222221    1245677777


Q ss_pred             CCCEEEEEec-CchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 017520          273 DGTFWIAIIK-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR  331 (370)
Q Consensus       273 ~G~lwv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~  331 (370)
                      ++++++.+.+ |..++    ..||.++.+..        +.+++..=.-++|+|+|+.+.
T Consensus       158 ~nd~Fflt~GlG~v~I----LsypsLkpv~s--------i~AH~snCicI~f~p~GryfA  205 (313)
T KOG1407|consen  158 SNDLFFLTNGLGCVEI----LSYPSLKPVQS--------IKAHPSNCICIEFDPDGRYFA  205 (313)
T ss_pred             CCCEEEEecCCceEEE----Eeccccccccc--------cccCCcceEEEEECCCCceEe
Confidence            7788887766 43332    23444443321        223444445688899998876

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.26  E-value=1.1  Score=42.52  Aligned_cols=213  Identities=14%  Similarity=0.114  Sum_probs=103.9

Q ss_pred             EEEEecCCeEEEEe--CCeEEEEEecCCCc-eeceEEcCCCcEEEEeCCC--ceEEEcCCC-eEEEEeecCCcccccccc
Q 017520           92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT-LVGLTSTKEGHLIICDNAN--GLHKVSEDG-VENFLSYVNGSKLRFAND  165 (370)
Q Consensus        92 l~v~~~~g~I~~~~--~g~~~~~~~~~~~p-~~gl~~d~~G~L~v~~~~~--gi~~~~~~g-~~~~~~~~~g~~~~~~~~  165 (370)
                      |..++.+|.+..||  .|+++....-...| . .+-.-.+..+-.++..+  .+++++.++ ...+..     ..+.++.
T Consensus       291 ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~l-DVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~G-----H~g~V~a  364 (524)
T KOG0273|consen  291 ILSGGVDGTTILWDAHTGTVKQQFEFHSAPAL-DVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIG-----HHGEVNA  364 (524)
T ss_pred             EEeccCCccEEEEeccCceEEEeeeeccCCcc-ceEEecCceEeecCCCceEEEEEecCCCcceeeec-----ccCceEE
Confidence            33344555566666  45544332222222 2 22222222333333332  255555555 554432     2357889


Q ss_pred             eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEe-------cCCCCccc-eEEcc-CCCEEEE
Q 017520          166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVA-------DGFYFANG-VALSR-DEDYVVV  235 (370)
Q Consensus       166 l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~-------~~~~~p~g-i~~~~-dg~~l~v  235 (370)
                      |-+++.|.|..+.+.                 ++++-.++... +.+.-+.       +-...|.| +...+ ++..+..
T Consensus       365 lk~n~tg~LLaS~Sd-----------------D~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s  427 (524)
T KOG0273|consen  365 LKWNPTGSLLASCSD-----------------DGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS  427 (524)
T ss_pred             EEECCCCceEEEecC-----------------CCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence            999999999888653                 23343333211 1111110       00111222 22222 3444555


Q ss_pred             EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520          236 CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  314 (370)
Q Consensus       236 ~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
                      +...+ |..||+..+.  -...|... ......+++.++|.+...-.-.                               
T Consensus       428 as~dstV~lwdv~~gv--~i~~f~kH-~~pVysvafS~~g~ylAsGs~d-------------------------------  473 (524)
T KOG0273|consen  428 ASFDSTVKLWDVESGV--PIHTLMKH-QEPVYSVAFSPNGRYLASGSLD-------------------------------  473 (524)
T ss_pred             eecCCeEEEEEccCCc--eeEeeccC-CCceEEEEecCCCcEEEecCCC-------------------------------
Confidence            56556 8888876542  12233321 1113457889999655442221                               


Q ss_pred             CCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          315 GGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       315 ~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                         ++|.-.+ +.|++.++|.+..+     +..+... +|+...+......+.++++
T Consensus       474 ---g~V~iws~~~~~l~~s~~~~~~-----Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  474 ---GCVHIWSTKTGKLVKSYQGTGG-----IFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ---CeeEeccccchheeEeecCCCe-----EEEEEEcCCCCEEEEEecCCCceEEEe
Confidence               3455555 56899999987554     3344432 3566666666666655553

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.20  E-value=0.99  Score=42.90  Aligned_cols=223  Identities=10%  Similarity=0.067  Sum_probs=115.5

Q ss_pred             CcceEEcCCCcEEE-EecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-CCCeEEEEee
Q 017520           81 PEDASMDKNGVIYT-ATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDGVENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v-~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~g~~~~~~~  154 (370)
                      ..++.+-+||.|.. |+..|.|..|+ +-+  +..+.......+ -..|.+.+ .+++...+.++.+++ .++..+... 
T Consensus        71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~-~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~-  148 (487)
T KOG0310|consen   71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVH-VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE-  148 (487)
T ss_pred             eeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCcee-EEEecccCCeEEEecCCCceEEEEEcCCcEEEEE-
Confidence            34455556676663 44566666666 211  112222222234 56676655 566665567788877 444111111 


Q ss_pred             cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~  232 (370)
                      ..+.. ..+...++.| .+++.++-+                 -+|.|-.||..+.....+.-+...| ..+.+-|.|. 
T Consensus       149 l~~ht-DYVR~g~~~~~~~hivvtGs-----------------YDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-  209 (487)
T KOG0310|consen  149 LSGHT-DYVRCGDISPANDHIVVTGS-----------------YDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-  209 (487)
T ss_pred             ecCCc-ceeEeeccccCCCeEEEecC-----------------CCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC-
Confidence            12211 2566667765 457888854                 3467778887654222222122223 3455556666 


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccc
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  310 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (370)
                      ++++-.++ +.+||+.++..-....+  +..--..-+++.++++ ++-+...+                           
T Consensus       210 ~iasAgGn~vkVWDl~~G~qll~~~~--~H~KtVTcL~l~s~~~rLlS~sLD~---------------------------  260 (487)
T KOG0310|consen  210 LIASAGGNSVKVWDLTTGGQLLTSMF--NHNKTVTCLRLASDSTRLLSGSLDR---------------------------  260 (487)
T ss_pred             EEEEcCCCeEEEEEecCCceehhhhh--cccceEEEEEeecCCceEeeccccc---------------------------
Confidence            66666666 88899873311111111  1111133466666664 55555544                           


Q ss_pred             cccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEE
Q 017520          311 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIG  365 (370)
Q Consensus       311 ~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~  365 (370)
                              .+-.|| .+-+++.++.-+.+.    .+..+.. +.++++|--++--..
T Consensus       261 --------~VKVfd~t~~Kvv~s~~~~~pv----Lsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  261 --------HVKVFDTTNYKVVHSWKYPGPV----LSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             --------ceEEEEccceEEEEeeecccce----eeEEecCCCceEEEecccceeee
Confidence                    366677 567888887766542    3344444 356888866655433

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.18  E-value=1.1  Score=43.36  Aligned_cols=107  Identities=20%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             ceEEcCCCc-EEEEeCCC---ceEEEcCCC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccc
Q 017520          122 GLTSTKEGH-LIICDNAN---GLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       122 gl~~d~~G~-L~v~~~~~---gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      ...+.+||+ |.++....   .|+.+|-++  ...+... .+.. ..|   .+.|||+ |+|+...              
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~gi~-~~P---s~spdG~~ivf~Sdr--------------  302 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-FGIN-TSP---SWSPDGSKIVFTSDR--------------  302 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-Cccc-cCc---cCCCCCCEEEEEeCC--------------
Confidence            466778886 33333222   477777333  3333221 2211 122   5668894 6655331              


Q ss_pred             cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC--c--EEEEEeCC
Q 017520          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--K--CRKYWLKG  248 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~--~--l~~~~~~~  248 (370)
                       .+.-.|+++|.++++.+.+.........-.+++||+.+.+....  .  |..+++..
T Consensus       303 -~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         303 -GGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             -CCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence             13347999999988877666555555566789999977777732  2  77777644

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.11  E-value=0.19  Score=50.38  Aligned_cols=150  Identities=12%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             CcceEEcC--CCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEE--E
Q 017520           81 PEDASMDK--NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VEN--F  151 (370)
Q Consensus        81 P~~i~~d~--~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~--~  151 (370)
                      ..||++.|  |.+..-|+-||+|..|+  +.++..|.+...... ++++.|||..-|.....|..++- ..|  +..  .
T Consensus       412 VTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  412 VTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH  490 (712)
T ss_pred             eEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence            46688876  44555667899999999  777888877666677 99999999754444455665554 334  221  1


Q ss_pred             EeecCC--cccccccceEEcCCC--cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cce
Q 017520          152 LSYVNG--SKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGV  224 (370)
Q Consensus       152 ~~~~~g--~~~~~~~~l~~d~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~gi  224 (370)
                      +....+  ....-+.++-+.+..  ++.||..                  +.+|..||..+..+...+.+....   .--
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn------------------DSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A  552 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN------------------DSRIRIYDGRDKDLVHKFKGFRNTSSQISA  552 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCCCeEEEecC------------------CCceEEEeccchhhhhhhcccccCCcceee
Confidence            111111  111235566555422  5777743                  457888887544443334444433   335


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      .++.||+.++.+..+. |+.|+.+..
T Consensus       553 sfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  553 SFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             eEccCCCEEEEeecCceEEEEeCCCC
Confidence            6888999888887666 777776443

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=96.10  E-value=0.022  Score=35.18  Aligned_cols=36  Identities=19%  Similarity=0.164  Sum_probs=30.3

Q ss_pred             EecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520          214 VADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       214 ~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      +..++..|+|+++++.++.+||++...  |.+++++|.
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            345678899999999999999999987  888887663

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.03  E-value=1.1  Score=40.52  Aligned_cols=150  Identities=11%  Similarity=0.117  Sum_probs=81.6

Q ss_pred             CCcceEEcCCCcEEEE-ecCCeEEEEe--CCe-----EEEEEecCCCceeceEEcCCCcEE-EEeC-CCceEE--Ec--C
Q 017520           80 HPEDASMDKNGVIYTA-TRDGWIKRLQ--DGT-----WVNWKFIDSQTLVGLTSTKEGHLI-ICDN-ANGLHK--VS--E  145 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~-~~~g~I~~~~--~g~-----~~~~~~~~~~p~~gl~~d~~G~L~-v~~~-~~gi~~--~~--~  145 (370)
                      .-.++++.+||.-+++ ..|+.|..|+  +-.     .....-..+.|. .++|.+|-.-+ |.-. +..++.  .+  +
T Consensus        88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~~  166 (420)
T KOG2096|consen   88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKKT  166 (420)
T ss_pred             ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeecc
Confidence            4678999999965544 3777777777  211     111122334677 88998887533 3222 233443  33  3


Q ss_pred             CC-eEEEEeecCCccc---ccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC
Q 017520          146 DG-VENFLSYVNGSKL---RFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (370)
Q Consensus       146 ~g-~~~~~~~~~g~~~---~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~  220 (370)
                      +| ...-........+   +.+.-+.+. .++..|+...+                ....|..|+.++.....+.++...
T Consensus       167 dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas----------------~dt~i~lw~lkGq~L~~idtnq~~  230 (420)
T KOG2096|consen  167 DGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS----------------LDTKICLWDLKGQLLQSIDTNQSS  230 (420)
T ss_pred             cCCCCcccccccccccchhcccceEEEeecCCceEEEEec----------------CCCcEEEEecCCceeeeecccccc
Confidence            44 2111111111111   122222232 34455665443                334688888885545555555555


Q ss_pred             ccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          221 ANGVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      ..-.+++|+|+++.++...- |.+|.+
T Consensus       231 n~~aavSP~GRFia~~gFTpDVkVwE~  257 (420)
T KOG2096|consen  231 NYDAAVSPDGRFIAVSGFTPDVKVWEP  257 (420)
T ss_pred             ccceeeCCCCcEEEEecCCCCceEEEE
Confidence            66778999999888887665 666554

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=95.98  E-value=1.3  Score=42.65  Aligned_cols=138  Identities=14%  Similarity=0.129  Sum_probs=71.6

Q ss_pred             EEcCCC-cEEEEeCCCceEEEc---CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520          124 TSTKEG-HLIICDNANGLHKVS---EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (370)
Q Consensus       124 ~~d~~G-~L~v~~~~~gi~~~~---~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~  197 (370)
                      .+.|+. +.+++....|-+|+.   ...  .+++.....+..--.+..-++++||++ |+..                -.
T Consensus       275 ~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~-iAag----------------c~  337 (641)
T KOG0772|consen  275 CWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKL-IAAG----------------CL  337 (641)
T ss_pred             ccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcch-hhhc----------------cc
Confidence            444444 344444445555544   222  555554433322234556788999987 4422                13


Q ss_pred             CceEEEEeCCCCeEEEE--e----cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCC-C-CCce
Q 017520          198 HGQLLKYDPSSNITTLV--A----DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPG-A-PDNI  268 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~--~----~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g-~-p~~i  268 (370)
                      +|.|-.|+..+..+++.  .    ........|.|+.||+.|.--...+ +..||+...+.- ...+. +++. + -.+.
T Consensus       338 DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp-L~~~t-gL~t~~~~tdc  415 (641)
T KOG0772|consen  338 DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP-LNVRT-GLPTPFPGTDC  415 (641)
T ss_pred             CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc-hhhhc-CCCccCCCCcc
Confidence            56677776432222221  1    1223457899999999554444444 888887654211 11111 1221 2 2457


Q ss_pred             eECCCCCEEEEE
Q 017520          269 NLAPDGTFWIAI  280 (370)
Q Consensus       269 ~~d~~G~lwv~~  280 (370)
                      +++++..|.++-
T Consensus       416 ~FSPd~kli~TG  427 (641)
T KOG0772|consen  416 CFSPDDKLILTG  427 (641)
T ss_pred             ccCCCceEEEec
Confidence            889988866663

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.98  E-value=1.9  Score=42.76  Aligned_cols=179  Identities=11%  Similarity=0.017  Sum_probs=101.4

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCc-EEEEeCCCceEE-Ec-CCC-eEEE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGH-LIICDNANGLHK-VS-EDG-VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~-~~-~~g-~~~~  151 (370)
                      ..-|+++..+.|+|+-...+|.|..||  +++... +...++..+ .|+..+.+. +-|+.. .|++. +. ..+ ++.-
T Consensus        70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igcd-dGvl~~~s~~p~~I~~~  147 (691)
T KOG2048|consen   70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCD-DGVLYDFSIGPDKITYK  147 (691)
T ss_pred             CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecC-CceEEEEecCCceEEEE
Confidence            457889999899999998999999999  776544 334456678 899988775 666643 34333 33 333 2221


Q ss_pred             EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE----ecCCCC-ccce-
Q 017520          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFYF-ANGV-  224 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~~-p~gi-  224 (370)
                       ... +..-..+-++.++++|. |..+.                  .+|.|..+|..+++.-..    ..++.. -..+ 
T Consensus       148 -r~l-~rq~sRvLslsw~~~~~~i~~Gs------------------~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iV  207 (691)
T KOG2048|consen  148 -RSL-MRQKSRVLSLSWNPTGTKIAGGS------------------IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIV  207 (691)
T ss_pred             -eec-ccccceEEEEEecCCccEEEecc------------------cCceEEEEEcCCCceEEEeeecccccccCCceEE
Confidence             111 11113455788889887 55443                  246677888776544321    223332 2333 


Q ss_pred             ---EEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520          225 ---ALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL  283 (370)
Q Consensus       225 ---~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~  283 (370)
                         .+-.|+. +.-+++.+ |.-+|.+.....+  .+ ..+.+-.--++.+.++ +++++..++
T Consensus       208 WSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiq--S~-~~h~adVl~Lav~~~~d~vfsaGvd~  267 (691)
T KOG2048|consen  208 WSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQ--SH-SCHDADVLALAVADNEDRVFSAGVDP  267 (691)
T ss_pred             EEEEEeecCc-EEEecCCceEEEEcccCcchhh--hh-hhhhcceeEEEEcCCCCeEEEccCCC
Confidence               3335665 66667777 6666644321111  11 1122223346666665 566665554

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.96  E-value=0.89  Score=42.50  Aligned_cols=152  Identities=15%  Similarity=0.192  Sum_probs=87.8

Q ss_pred             ceEEcCCCcEEEEeCCC-ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520          122 GLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~-gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  198 (370)
                      -++++||.+-.++-... -+...| .+| .......  +. ..++...+.-|||.=+|+-+                 ++
T Consensus       274 yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~--~~-~~S~~sc~W~pDg~~~V~Gs-----------------~d  333 (519)
T KOG0293|consen  274 YIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS--GL-GFSVSSCAWCPDGFRFVTGS-----------------PD  333 (519)
T ss_pred             EEEECCCCCeEEecCchHheeeccCCcchhhhhccc--Cc-CCCcceeEEccCCceeEecC-----------------CC
Confidence            68899998866654443 344455 566 3322221  11 13566678888886666643                 45


Q ss_pred             ceEEEEeCCCCeEEEEecCC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          199 GQLLKYDPSSNITTLVADGF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      ..++.+|.++..... ..+.  .....+++++||+.++...... +..|+.....  .+. ... .......+.++.||+
T Consensus       334 r~i~~wdlDgn~~~~-W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~--dr~-lis-e~~~its~~iS~d~k  408 (519)
T KOG0293|consen  334 RTIIMWDLDGNILGN-WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARV--DRG-LIS-EEQPITSFSISKDGK  408 (519)
T ss_pred             CcEEEecCCcchhhc-ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhh--hhc-ccc-ccCceeEEEEcCCCc
Confidence            778888887443221 1222  2345788999999888888766 8888754321  111 111 112245688899999


Q ss_pred             EEEEEecCc-hhHHHhhhcchhHHH
Q 017520          276 FWIAIIKLD-ARRMKILNSSKLIKH  299 (370)
Q Consensus       276 lwv~~~~~~-~~~~~~~~~~~~~~~  299 (370)
                      +.+...... ..++|+- .+..+|+
T Consensus       409 ~~LvnL~~qei~LWDl~-e~~lv~k  432 (519)
T KOG0293|consen  409 LALVNLQDQEIHLWDLE-ENKLVRK  432 (519)
T ss_pred             EEEEEcccCeeEEeecc-hhhHHHH
Confidence            888765543 3444432 3344444

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=95.93  E-value=0.15  Score=48.18  Aligned_cols=137  Identities=15%  Similarity=0.215  Sum_probs=89.1

Q ss_pred             ceEEcC-CCcEEEEeCCCc-eEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccccc
Q 017520          122 GLTSTK-EGHLIICDNANG-LHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG  195 (370)
Q Consensus       122 gl~~d~-~G~L~v~~~~~g-i~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~  195 (370)
                      .+.+-+ .+.|+.+....+ |..++  .++  ++.+....     ..+.++.+..+|.-+++.+                
T Consensus       219 ai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~-----k~Vrd~~~s~~g~~fLS~s----------------  277 (503)
T KOG0282|consen  219 AIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHR-----KPVRDASFNNCGTSFLSAS----------------  277 (503)
T ss_pred             hhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcch-----hhhhhhhccccCCeeeeee----------------
Confidence            455556 788888765554 34444  334  55543221     2467889999998877765                


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD  273 (370)
Q Consensus       196 ~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  273 (370)
                       .+..|-.+|.+||++..-+..-.-|+.+.+.||+..++++.. .+ |..||+..++.  ...+...+ +-...|.+-++
T Consensus       278 -fD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~hL-g~i~~i~F~~~  353 (503)
T KOG0282|consen  278 -FDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV--VQEYDRHL-GAILDITFVDE  353 (503)
T ss_pred             -cceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH--HHHHHhhh-hheeeeEEccC
Confidence             345688899999998877777778899999999844555554 44 99999865432  12222222 23445666677


Q ss_pred             CCEEEEEecC
Q 017520          274 GTFWIAIIKL  283 (370)
Q Consensus       274 G~lwv~~~~~  283 (370)
                      |.-+|++...
T Consensus       354 g~rFissSDd  363 (503)
T KOG0282|consen  354 GRRFISSSDD  363 (503)
T ss_pred             CceEeeeccC
Confidence            8778877654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=95.93  E-value=0.43  Score=44.32  Aligned_cols=227  Identities=17%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             CCceeceEEcCCCcEEEEeCCCceEEEc-CCC--e----------E--EEEe-ecCCcccccccceEEcCCCcEEEEeCC
Q 017520          117 SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--V----------E--NFLS-YVNGSKLRFANDVVEASDGSLYFTVSS  180 (370)
Q Consensus       117 ~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~----------~--~~~~-~~~g~~~~~~~~l~~d~~G~l~v~d~~  180 (370)
                      ...+ ++.|+++|+|.....+.|...+. +..  .          +  .++. ...+ ....+.+++..+++++.++.+ 
T Consensus        66 ~aVN-~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~s-  142 (434)
T KOG1009|consen   66 RAVN-VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSGS-  142 (434)
T ss_pred             ceeE-EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeeee-
Confidence            3467 89999999999977666655544 220  0          0  0000 1111 123567888888888766643 


Q ss_pred             CCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC---------
Q 017520          181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE---------  249 (370)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~---------  249 (370)
                                      ..+.++.+|...|++.... +.-..++|+++||-++.+-.-...+ .+.+.+.-.         
T Consensus       143 ----------------~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~  206 (434)
T KOG1009|consen  143 ----------------VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLD  206 (434)
T ss_pred             ----------------ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeee
Confidence                            3467888888878776544 3456789999988776332222222 111111100         


Q ss_pred             ---------CCC-ceeeecc-CCCCCCCceeECCCCCEEEEEecC----chh--HHHhhhcchhHHHHHHhCCccccc--
Q 017520          250 ---------RKG-KLETFAE-NLPGAPDNINLAPDGTFWIAIIKL----DAR--RMKILNSSKLIKHVLAAYPKLFSQ--  310 (370)
Q Consensus       250 ---------~~~-~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~--  310 (370)
                               ..+ ..+.|.+ +++.+-..+.+.++|.+++.-.+.    ++.  ..-++..+..+++.++.+|..-.+  
T Consensus       207 ~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~l  286 (434)
T KOG1009|consen  207 IMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPAL  286 (434)
T ss_pred             EeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceE
Confidence                     000 1112221 233334445666777766653221    111  111233344555566667665432  


Q ss_pred             ------------------cccCCCceEEEEECCCCcEEE-------EEeCCCCCccccceeEEEECC--EEEEEeCCCC
Q 017520          311 ------------------FITLGGGAHLIHVAEDGTIIR-------NLVDPTGQLMSFVTSGLQVDN--HLYVISLTSN  362 (370)
Q Consensus       311 ------------------~~~~~~~g~v~~~~~~g~~~~-------~~~~~~g~~~~~~t~~~~~~g--~L~~gs~~~~  362 (370)
                                        .....+|.+++.+..+..+..       -|.--++..+..+|.+...++  .|.++|..+-
T Consensus       287 avr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGy  365 (434)
T KOG1009|consen  287 AVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGF  365 (434)
T ss_pred             EEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCc
Confidence                              122456677766654333322       111223455666677776543  5777777764

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.90  E-value=1.3  Score=41.23  Aligned_cols=63  Identities=19%  Similarity=0.388  Sum_probs=39.9

Q ss_pred             CccceEEccCCCEEEEEeCC------c-EEEEEeCCCCCCceeeeccCC-------CC-----CCCceeECCCCC-EEEE
Q 017520          220 FANGVALSRDEDYVVVCESW------K-CRKYWLKGERKGKLETFAENL-------PG-----APDNINLAPDGT-FWIA  279 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~------~-l~~~~~~~~~~~~~~~~~~~~-------~g-----~p~~i~~d~~G~-lwv~  279 (370)
                      -+.||++.++|..++..|..      . |++|+.+|........ ....       .+     ...++++.++|+ +|++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            46789998888855555666      5 9999987643222211 1111       11     234589999998 8998


Q ss_pred             EecC
Q 017520          280 IIKL  283 (370)
Q Consensus       280 ~~~~  283 (370)
                      ....
T Consensus       165 ~E~~  168 (326)
T PF13449_consen  165 MESP  168 (326)
T ss_pred             ECcc
Confidence            8654

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.94  Score=41.67  Aligned_cols=104  Identities=15%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeCC
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      ..+..|...+||..|++.+-                .+..+..+|+++++...+. .++....-+-++|||+.++.+.-.
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d  259 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD  259 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence            45677888999999998653                4567889999998877665 344444457899999966666665


Q ss_pred             cEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          240 KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                      .++++|-.... -+.+.+. ..+|....-+-++.|. +.++..+
T Consensus       260 avfrlw~e~q~-wt~erw~-lgsgrvqtacWspcGsfLLf~~sg  301 (445)
T KOG2139|consen  260 AVFRLWQENQS-WTKERWI-LGSGRVQTACWSPCGSFLLFACSG  301 (445)
T ss_pred             ceeeeehhccc-ceeccee-ccCCceeeeeecCCCCEEEEEEcC
Confidence            58888732211 1223332 2344555666788885 4444443

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=0.22  Score=46.30  Aligned_cols=147  Identities=15%  Similarity=0.164  Sum_probs=77.9

Q ss_pred             CCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceec
Q 017520          116 DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       116 ~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~  191 (370)
                      ..... .|.|.+||.+.+.-.......++ .+|  +....+.-....+...+ +-.|++ ..+++.+..           
T Consensus       186 ~~eV~-DL~FS~dgk~lasig~d~~~VW~~~~g~~~a~~t~~~k~~~~~~cR-F~~d~~~~~l~laa~~-----------  252 (398)
T KOG0771|consen  186 HAEVK-DLDFSPDGKFLASIGADSARVWSVNTGAALARKTPFSKDEMFSSCR-FSVDNAQETLRLAASQ-----------  252 (398)
T ss_pred             cCccc-cceeCCCCcEEEEecCCceEEEEeccCchhhhcCCcccchhhhhce-ecccCCCceEEEEEec-----------
Confidence            34566 89999999887765545444444 556  33332211112222222 222332 267766542           


Q ss_pred             ccccCCCceEEEEeCCCC------eEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCC
Q 017520          192 ILEGKPHGQLLKYDPSSN------ITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGA  264 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~  264 (370)
                          .+.++|..++....      +.+...........++++.||+++-++...+ |..|+...-  .....+-....+.
T Consensus       253 ----~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l--q~~~~vk~aH~~~  326 (398)
T KOG0771|consen  253 ----FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL--QRLQYVKEAHLGF  326 (398)
T ss_pred             ----CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee--eeeEeehhhheee
Confidence                13344554443221      1122223344567889999999888888877 888875431  1121122223345


Q ss_pred             CCceeECCCCCEEEEEe
Q 017520          265 PDNINLAPDGTFWIAII  281 (370)
Q Consensus       265 p~~i~~d~~G~lwv~~~  281 (370)
                      ..++++.+|-+.-....
T Consensus       327 VT~ltF~Pdsr~~~svS  343 (398)
T KOG0771|consen  327 VTGLTFSPDSRYLASVS  343 (398)
T ss_pred             eeeEEEcCCcCcccccc
Confidence            66777777766555543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.74  E-value=2.9  Score=43.12  Aligned_cols=127  Identities=14%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             CCcCCCcceEEcCCCcEEEEe-cCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEE
Q 017520           76 GSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENF  151 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~  151 (370)
                      |..++..++.+++..++.++. .|+.|..|| +.  .++.+....++-+ -++..|..+||.+.+++|+..+.-..    
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNLfAAgHDsGm~VFkleR----  322 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNLFAAGHDSGMIVFKLER----  322 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcceeeeecCCceEEEEEcc----
Confidence            666778889999877777776 788888898 43  3667766777888 89999999999998877755543000    


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--C----CCCccceE
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G----FYFANGVA  225 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~----~~~p~gi~  225 (370)
                                .....++..++-+|+-+                    ..|+.+|..+.+-..+..  .    ..-|..+.
T Consensus       323 ----------Erpa~~v~~n~LfYvkd--------------------~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~sms  372 (1202)
T KOG0292|consen  323 ----------ERPAYAVNGNGLFYVKD--------------------RFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLS  372 (1202)
T ss_pred             ----------cCceEEEcCCEEEEEcc--------------------ceEEeeeccccccceeEeccCCCcccCCcceee
Confidence                      01123443333444443                    357777766533322221  1    12346788


Q ss_pred             EccCCCEEEEEe
Q 017520          226 LSRDEDYVVVCE  237 (370)
Q Consensus       226 ~~~dg~~l~v~~  237 (370)
                      ++|..+.+.++.
T Consensus       373 YNpae~~vlics  384 (1202)
T KOG0292|consen  373 YNPAENAVLICS  384 (1202)
T ss_pred             eccccCeEEEEe
Confidence            888877777773

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.67  E-value=1.3  Score=38.46  Aligned_cols=126  Identities=11%  Similarity=0.043  Sum_probs=81.1

Q ss_pred             cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC----eEEEEeecCCcccccccceE
Q 017520           97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG----VENFLSYVNGSKLRFANDVV  167 (370)
Q Consensus        97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g----~~~~~~~~~g~~~~~~~~l~  167 (370)
                      .+..|+.|+  +|+ .++|....++.+ .++|..+-.+.+.... ..+..+| +..    ++.+.....     .+..+.
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D-----~V~Si~  152 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKD-----GVSSID  152 (307)
T ss_pred             CCceEEEEEcccCeeeeecccccceee-EEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcC-----ceeEEE
Confidence            667788888  776 466777778888 9999877777765444 4566666 544    232222111     232333


Q ss_pred             EcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc-EEEEE
Q 017520          168 EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK-CRKYW  245 (370)
Q Consensus       168 ~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~-l~~~~  245 (370)
                      +  .++..++-+                 .+|++.+||...|+..  .+.+..| +.+.+++|++..+++..+. |..+|
T Consensus       153 v--~~heIvaGS-----------------~DGtvRtydiR~G~l~--sDy~g~pit~vs~s~d~nc~La~~l~stlrLlD  211 (307)
T KOG0316|consen  153 V--AEHEIVAGS-----------------VDGTVRTYDIRKGTLS--SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLD  211 (307)
T ss_pred             e--cccEEEeec-----------------cCCcEEEEEeecceee--hhhcCCcceeEEecCCCCEEEEeeccceeeecc
Confidence            3  344444432                 5789999998755432  2334444 7899999999999888888 77777


Q ss_pred             eCCC
Q 017520          246 LKGE  249 (370)
Q Consensus       246 ~~~~  249 (370)
                      -+++
T Consensus       212 k~tG  215 (307)
T KOG0316|consen  212 KETG  215 (307)
T ss_pred             cchh
Confidence            5543

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=95.64  E-value=0.83  Score=42.61  Aligned_cols=125  Identities=13%  Similarity=0.077  Sum_probs=75.4

Q ss_pred             cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEeecCCc-ccccccceEEcC
Q 017520           97 RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNGS-KLRFANDVVEAS  170 (370)
Q Consensus        97 ~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~-~~~~~~~l~~d~  170 (370)
                      .+++|.-|+  ......-.+.++... ++....+|. |..+.-+.-+-.++ .+- +...... .+. --...+.+.++|
T Consensus       320 ~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA-~g~k~asDwtrvvfSp  397 (459)
T KOG0288|consen  320 FDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA-EGFKCASDWTRVVFSP  397 (459)
T ss_pred             cccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeec-cccccccccceeEECC
Confidence            566666666  333333334455666 777777775 55554334455555 333 4433322 221 113467789999


Q ss_pred             CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC---ccceEEccCCCEEEEEeCCc
Q 017520          171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF---ANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~---p~gi~~~~dg~~l~v~~~~~  240 (370)
                      +|....+ .+                .+|.|+.|+..+++++.....-..   .+.++|++-|..+.-++...
T Consensus       398 d~~YvaA-GS----------------~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~  453 (459)
T KOG0288|consen  398 DGSYVAA-GS----------------ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK  453 (459)
T ss_pred             CCceeee-cc----------------CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence            9884444 33                578999999999999876544332   35677888888777666544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=95.60  E-value=0.37  Score=44.16  Aligned_cols=142  Identities=13%  Similarity=0.172  Sum_probs=90.3

Q ss_pred             eEEc-CCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecC
Q 017520           84 ASMD-KNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN  156 (370)
Q Consensus        84 i~~d-~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~  156 (370)
                      +.+. -|+.++.++.|+.|.-||  .|+ ............ +++..|+.+++.......+-.+. +.|  ...+    .
T Consensus       283 V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvr-al~lhP~e~~fASas~dnik~w~~p~g~f~~nl----s  357 (460)
T KOG0285|consen  283 VMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVR-ALCLHPKENLFASASPDNIKQWKLPEGEFLQNL----S  357 (460)
T ss_pred             EEeecCCCceEEecCCceEEEeeeccCceeEeeecccceee-EEecCCchhhhhccCCccceeccCCccchhhcc----c
Confidence            4443 378999999999999999  565 334444444456 88888888888876666777777 777  3322    2


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec------CCC---CccceEEc
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------GFY---FANGVALS  227 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------~~~---~p~gi~~~  227 (370)
                      +. ..-+|.|++..||.++.+.                  .+|.++.+|-+++.......      .+.   .....+||
T Consensus       358 gh-~~iintl~~nsD~v~~~G~------------------dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD  418 (460)
T KOG0285|consen  358 GH-NAIINTLSVNSDGVLVSGG------------------DNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD  418 (460)
T ss_pred             cc-cceeeeeeeccCceEEEcC------------------CceEEEEEecCcCcccccccccccCCccccccceeEEeec
Confidence            21 1356778888777665552                  45778888876653322111      111   22345778


Q ss_pred             cCCCEEEEEeCCc-EEEEEeCCC
Q 017520          228 RDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       228 ~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ..|..|+-++.+. |..|.-+..
T Consensus       419 ktg~rlit~eadKtIk~~keDe~  441 (460)
T KOG0285|consen  419 KTGSRLITGEADKTIKMYKEDEH  441 (460)
T ss_pred             ccCceEEeccCCcceEEEecccc
Confidence            8888788888877 666654443

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.57  E-value=0.88  Score=45.87  Aligned_cols=144  Identities=15%  Similarity=0.083  Sum_probs=83.0

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc---CCC-eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccC
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS---EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      .|....++-|+-+..+ .-+++.   .+. +..+...      .++..++|.| |.+.+++-+                 
T Consensus       374 DlSWSKn~fLLSSSMD-KTVRLWh~~~~~CL~~F~Hn------dfVTcVaFnPvDDryFiSGS-----------------  429 (712)
T KOG0283|consen  374 DLSWSKNNFLLSSSMD-KTVRLWHPGRKECLKVFSHN------DFVTCVAFNPVDDRYFISGS-----------------  429 (712)
T ss_pred             ecccccCCeeEecccc-ccEEeecCCCcceeeEEecC------CeeEEEEecccCCCcEeecc-----------------
Confidence            5666655555555444 344443   233 6666432      4788899998 446666533                 


Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc----CC-CCCCCceeE
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE----NL-PGAPDNINL  270 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~----~~-~g~p~~i~~  270 (370)
                      -++.+..|+-...++-...+--.....+++.|||+..++....+ ++.|+..+.+......+..    +. .....|+.+
T Consensus       430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~  509 (712)
T KOG0283|consen  430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF  509 (712)
T ss_pred             cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence            34666667665555544433334567899999999888888888 7778766653322111110    01 112444444


Q ss_pred             CCCC--CEEEEEecCchhHHH
Q 017520          271 APDG--TFWIAIIKLDARRMK  289 (370)
Q Consensus       271 d~~G--~lwv~~~~~~~~~~~  289 (370)
                      .+..  .+.|+++..|..++|
T Consensus       510 ~p~~~~~vLVTSnDSrIRI~d  530 (712)
T KOG0283|consen  510 FPGDPDEVLVTSNDSRIRIYD  530 (712)
T ss_pred             cCCCCCeEEEecCCCceEEEe
Confidence            3211  588888877654444

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.56  E-value=0.24  Score=44.14  Aligned_cols=115  Identities=13%  Similarity=0.113  Sum_probs=66.5

Q ss_pred             EEccCCCEEEEEeCCc------EEEEEeCCC--CCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchh
Q 017520          225 ALSRDEDYVVVCESWK------CRKYWLKGE--RKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL  296 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~------l~~~~~~~~--~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  296 (370)
                      ++++||++||.+|.+-      |-+||....  +.+++.    +..-.|..+....||+..+..+++       |..+|-
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~----t~GiGpHev~lm~DGrtlvvanGG-------Iethpd  188 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS----THGIGPHEVTLMADGRTLVVANGG-------IETHPD  188 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc----cCCcCcceeEEecCCcEEEEeCCc-------eecccc
Confidence            5799999999998643      677776532  222222    222248889999999988888776       333322


Q ss_pred             HHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCcccccee-EEEECCEEEEEeC
Q 017520          297 IKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTS-GLQVDNHLYVISL  359 (370)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~-~~~~~g~L~~gs~  359 (370)
                      ..+.-.    .+.    .+..+ +..+| .+|++++.-.-+..+....+.- .+..+|++|+|..
T Consensus       189 fgR~~l----Nld----sMePS-lvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ  244 (366)
T COG3490         189 FGRTEL----NLD----SMEPS-LVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ  244 (366)
T ss_pred             cCcccc----chh----hcCcc-EEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence            211100    000    11112 44556 7899888765554333334433 3445699999854

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=95.46  E-value=0.17  Score=46.69  Aligned_cols=131  Identities=12%  Similarity=0.051  Sum_probs=77.2

Q ss_pred             cEEEEecCCeEEEEeCC--e--EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCccccc
Q 017520           91 VIYTATRDGWIKRLQDG--T--WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF  162 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~~g--~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~  162 (370)
                      +|..|+.+..++.|+..  +  ++.......-.+ .+.|+||++....... ..|...+ .+|  +..+...     ...
T Consensus       338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn-~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH-----v~~  411 (480)
T KOG0271|consen  338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVN-HVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH-----VAA  411 (480)
T ss_pred             eeEEecCCceEEEecccccccchhhhhchhhhee-eEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc-----cce
Confidence            34455566667777611  1  222222333456 7899998876665444 4455555 677  3333221     246


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCCc-
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK-  240 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~-  240 (370)
                      ++.++...|.+|.++.+                 .+..|-.++..++++..=.. .-....++.++|||. .+++.... 
T Consensus       412 VYqvawsaDsRLlVS~S-----------------kDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~-rV~sggkdk  473 (480)
T KOG0271|consen  412 VYQVAWSADSRLLVSGS-----------------KDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ-RVASGGKDK  473 (480)
T ss_pred             eEEEEeccCccEEEEcC-----------------CCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc-eeecCCCce
Confidence            78899999999999965                 34566677776665432122 223456788999998 44443333 


Q ss_pred             EEEEE
Q 017520          241 CRKYW  245 (370)
Q Consensus       241 l~~~~  245 (370)
                      ++++|
T Consensus       474 v~~lw  478 (480)
T KOG0271|consen  474 VLRLW  478 (480)
T ss_pred             EEEee
Confidence            77766

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=95.44  E-value=0.094  Score=46.96  Aligned_cols=106  Identities=14%  Similarity=0.186  Sum_probs=66.4

Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE---EEEecCCCCccceEEccCCCEEEEEeC
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      .+|.+.+.|...|.++.+                 .++.|-.+|-.....   ..++........+.+.|.|+++.++..
T Consensus       174 evn~l~FHPre~ILiS~s-----------------rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd  236 (430)
T KOG0640|consen  174 EVNDLDFHPRETILISGS-----------------RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD  236 (430)
T ss_pred             cccceeecchhheEEecc-----------------CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC
Confidence            578899999999988865                 345666677532111   112233334467889999998887766


Q ss_pred             Cc-EEEEEeCCCCCCceeeeccCCC-----CCCCceeECCCCCEEEEEec-CchhHHH
Q 017520          239 WK-CRKYWLKGERKGKLETFAENLP-----GAPDNINLAPDGTFWIAIIK-LDARRMK  289 (370)
Q Consensus       239 ~~-l~~~~~~~~~~~~~~~~~~~~~-----g~p~~i~~d~~G~lwv~~~~-~~~~~~~  289 (370)
                      .. +..||+.+     .+.|....|     +-...+..++.|++|++... |...+||
T Consensus       237 Hp~~rlYdv~T-----~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD  289 (430)
T KOG0640|consen  237 HPTLRLYDVNT-----YQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD  289 (430)
T ss_pred             CCceeEEeccc-----eeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence            55 88898753     555543222     12233567899999998644 3334444

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.41  E-value=0.78  Score=43.95  Aligned_cols=108  Identities=18%  Similarity=0.270  Sum_probs=67.6

Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--Cc--cceEEccCCCEEEEE
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--FA--NGVALSRDEDYVVVC  236 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--~p--~gi~~~~dg~~l~v~  236 (370)
                      +++...-..+||+-.+.-.                 ....|-.||..+-..++-. .+.  .|  ..+++++|.+..|-+
T Consensus       466 nyiRSckL~pdgrtLivGG-----------------eastlsiWDLAapTprika-eltssapaCyALa~spDakvcFsc  527 (705)
T KOG0639|consen  466 NYIRSCKLLPDGRTLIVGG-----------------EASTLSIWDLAAPTPRIKA-ELTSSAPACYALAISPDAKVCFSC  527 (705)
T ss_pred             cceeeeEecCCCceEEecc-----------------ccceeeeeeccCCCcchhh-hcCCcchhhhhhhcCCccceeeee
Confidence            4566666678886444321                 1245777776544333211 111  23  468889999977777


Q ss_pred             eCCc-EEEEEeCCCCCCceeeeccCCCCCCCc---eeECCCC-CEEEEEecCchhHHHhhh
Q 017520          237 ESWK-CRKYWLKGERKGKLETFAENLPGAPDN---INLAPDG-TFWIAIIKLDARRMKILN  292 (370)
Q Consensus       237 ~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~---i~~d~~G-~lwv~~~~~~~~~~~~~~  292 (370)
                      -+.+ |.+||+...      ..+..+.|++||   |.+..|| +||.|-..+....||+-.
T Consensus       528 csdGnI~vwDLhnq------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlre  582 (705)
T KOG0639|consen  528 CSDGNIAVWDLHNQ------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLRE  582 (705)
T ss_pred             ccCCcEEEEEcccc------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhh
Confidence            6767 999998643      122345677777   5677889 699998777666666543

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=95.40  E-value=3.2  Score=41.23  Aligned_cols=147  Identities=10%  Similarity=0.020  Sum_probs=83.4

Q ss_pred             CcceEEcC-CCcEEEEecCCeEEEEe--CCe-EE-EEE-ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCCeEEEEe
Q 017520           81 PEDASMDK-NGVIYTATRDGWIKRLQ--DGT-WV-NWK-FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDGVENFLS  153 (370)
Q Consensus        81 P~~i~~d~-~G~l~v~~~~g~I~~~~--~g~-~~-~~~-~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g~~~~~~  153 (370)
                      -.++|+.. ++.|-++-.+|.|-.|+  .+- .+ ++. +.....- +|++.+.|+|+=.+..+.|..+| .++......
T Consensus        28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE-~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~  106 (691)
T KOG2048|consen   28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIE-SLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNI  106 (691)
T ss_pred             eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCcee-eEEEccCCeEEeecCCceEEEEecccCceeEEe
Confidence            45667764 56677777888888888  332 12 222 2233455 89998788898877666688888 455111111


Q ss_pred             ecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--e-cCCCCccceEEccC
Q 017520          154 YVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--A-DGFYFANGVALSRD  229 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~-~~~~~p~gi~~~~d  229 (370)
                      ...+   ..+..+++.+.+. +-|+.                  .+|.++-++...+.++..  + ..-...-.+.++++
T Consensus       107 d~~g---g~IWsiai~p~~~~l~Igc------------------ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~  165 (691)
T KOG2048|consen  107 DSNG---GAIWSIAINPENTILAIGC------------------DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT  165 (691)
T ss_pred             cCCC---cceeEEEeCCccceEEeec------------------CCceEEEEecCCceEEEEeecccccceEEEEEecCC
Confidence            1112   3456777776663 44552                  224455555444444321  1 11122335677788


Q ss_pred             CCEEEEEeCCc-EEEEEeCCC
Q 017520          230 EDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~  249 (370)
                      +..+.....++ |..+|.+.+
T Consensus       166 ~~~i~~Gs~Dg~Iriwd~~~~  186 (691)
T KOG2048|consen  166 GTKIAGGSIDGVIRIWDVKSG  186 (691)
T ss_pred             ccEEEecccCceEEEEEcCCC
Confidence            87666666667 777886543

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.37  E-value=0.21  Score=46.41  Aligned_cols=173  Identities=12%  Similarity=0.136  Sum_probs=98.0

Q ss_pred             ceEEcCCC-cEEEEecCCeEEEEe-C-CeEEEEEe-cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeec
Q 017520           83 DASMDKNG-VIYTATRDGWIKRLQ-D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G-~l~v~~~~g~I~~~~-~-g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~  155 (370)
                      .|...++| +|.+|+..|...-|+ . -.++.+.. ...... ++....+|.-.|....+|.++|. ++-  ++.+    
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr-~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~----  175 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR-TMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII----  175 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce-eEEEccCCCEEEEcCCCceEEecccchhhhHHh----
Confidence            34556775 677888777777666 2 12333222 222344 88899888877765557888887 432  3322    


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVV  234 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~  234 (370)
                      ....-..+.+++++|....|++.+                 .+++|..+|..-.+- +++.....-+..+.++|....+.
T Consensus       176 ~ahh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia  238 (464)
T KOG0284|consen  176 QAHHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA  238 (464)
T ss_pred             hHhhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence            111124688999999888888865                 457777777543222 23333445677889999876444


Q ss_pred             EEeCCc-EEEEEeCCCCCCce-eeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          235 VCESWK-CRKYWLKGERKGKL-ETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       235 v~~~~~-l~~~~~~~~~~~~~-~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .....+ |..+|.+.   ++. ..+. ..-...-.+.+.++||+..+..
T Consensus       239 sgskDnlVKlWDprS---g~cl~tlh-~HKntVl~~~f~~n~N~Llt~s  283 (464)
T KOG0284|consen  239 SGSKDNLVKLWDPRS---GSCLATLH-GHKNTVLAVKFNPNGNWLLTGS  283 (464)
T ss_pred             EccCCceeEeecCCC---cchhhhhh-hccceEEEEEEcCCCCeeEEcc
Confidence            444444 55555433   221 1111 1111123456677786555543

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.36  E-value=4.2  Score=42.34  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCCc---------eeceEEc-----------------CCCcEEEEeCCCce
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT---------LVGLTST-----------------KEGHLIICDNANGL  140 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p---------~~gl~~d-----------------~~G~L~v~~~~~gi  140 (370)
                      +|.||+++.++.|+.+|  +|+...-.......         . |+++-                 .++++|+++.+..+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cR-Gvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCR-GVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccc-ceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            68999999999999999  78754322211100         1 22221                 23478888777788


Q ss_pred             EEEc-CCC
Q 017520          141 HKVS-EDG  147 (370)
Q Consensus       141 ~~~~-~~g  147 (370)
                      +.+| ++|
T Consensus       273 iALDA~TG  280 (764)
T TIGR03074       273 IALDADTG  280 (764)
T ss_pred             EEEECCCC
Confidence            9999 678

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.34  E-value=2.9  Score=42.02  Aligned_cols=173  Identities=13%  Similarity=0.117  Sum_probs=103.7

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEe--cCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEee
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKF--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSY  154 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~--~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~  154 (370)
                      ++++++|...+..-+..|..++  ++... ....  ...... .+++++|+...+.....++.++.  +.|  ++.....
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~  103 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAI  103 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEeeccceEEEEEcccchHhHhHhhc
Confidence            8999999766666556788888  67653 1111  112344 78999998876666666666655  566  3332211


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc-ceEEccCCCE-
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-GVALSRDEDY-  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~-gi~~~~dg~~-  232 (370)
                      -.    .-+-.+++++.|.+..+-.                 ..+.+.++|-+.+..+..+.+...+. .+.+.++-+. 
T Consensus       104 He----~Pvi~ma~~~~g~LlAtgg-----------------aD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~  162 (775)
T KOG0319|consen  104 HE----APVITMAFDPTGTLLATGG-----------------ADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW  162 (775)
T ss_pred             cC----CCeEEEEEcCCCceEEecc-----------------ccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence            01    1234689999996655532                 56788899988788887777765553 4667776542 


Q ss_pred             -EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          233 -VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       233 -l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                       |+..++.+ +..|++..... ...... ..-.-..++.+.+|++--++.
T Consensus       163 lL~sg~~D~~v~vwnl~~~~t-cl~~~~-~H~S~vtsL~~~~d~~~~ls~  210 (775)
T KOG0319|consen  163 LLASGATDGTVRVWNLNDKRT-CLHTMI-LHKSAVTSLAFSEDSLELLSV  210 (775)
T ss_pred             heeecCCCceEEEEEcccCch-HHHHHH-hhhhheeeeeeccCCceEEEe
Confidence             34445555 88898764322 111111 111234567777777644443

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.26  E-value=1.8  Score=45.14  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=83.3

Q ss_pred             cCCCceeceEEcCCCcEEEEeCCCceEEEc-CC--C-eEEEE--------------eecCCcccccccceEEcCCCcEEE
Q 017520          115 IDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED--G-VENFL--------------SYVNGSKLRFANDVVEASDGSLYF  176 (370)
Q Consensus       115 ~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~--g-~~~~~--------------~~~~g~~~~~~~~l~~d~~G~l~v  176 (370)
                      ..+... ++.+.+||..+....+.++..+. ..  | -..+.              ....+. -..+-+++.+|++.+.+
T Consensus        68 h~~sv~-CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   68 HDGSVN-CVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             ccCcee-EEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccCCCccEEE
Confidence            345566 89999999644433455654444 32  1 11110              001111 13456788899998888


Q ss_pred             EeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCce
Q 017520          177 TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKL  254 (370)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~  254 (370)
                      +.+                 -++.|..||..+.+.... ......+.|+.|||-|+++-....++ |..|....  .+..
T Consensus       146 S~s-----------------~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~i~  206 (942)
T KOG0973|consen  146 SVS-----------------LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WGIE  206 (942)
T ss_pred             Eec-----------------ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc--ceee
Confidence            865                 357899999877654333 34456789999999999444444444 55454322  1111


Q ss_pred             eeec---cCCCC--CCCceeECCCCCEEEEEecC
Q 017520          255 ETFA---ENLPG--APDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       255 ~~~~---~~~~g--~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +...   +..++  +-..+-.++||++.++.+..
T Consensus       207 k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  207 KSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             EeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            1111   11222  22234458899888876654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=95.23  E-value=1.1  Score=41.33  Aligned_cols=176  Identities=15%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             CCcCCCcceEEcCCC--cEEEEecCCeEEEEe-CC--eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--e
Q 017520           76 GSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG--TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--V  148 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G--~l~v~~~~g~I~~~~-~g--~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~  148 (370)
                      |.-.|-.++|-.+.-  .+..|+.||.|..|| ..  ....+....|-.. ||+++....+++++ +..+-.+.-+|  .
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~  141 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQTSFFTVGD-DKTVKQWKIDGPPL  141 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecccceEEecC-CcceeeeeccCCcc
Confidence            333456667766543  466777899999999 32  2455555666677 99999744566665 33233322223  2


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEEEEecCCCCccceEEc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADGFYFANGVALS  227 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~~~~~~p~gi~~~  227 (370)
                      ..+...      ....++.-...++++.|..                   ..+-.||.. +.-+..+..+......+.++
T Consensus       142 ~tilg~------s~~~gIdh~~~~~~FaTcG-------------------e~i~IWD~~R~~Pv~smswG~Dti~svkfN  196 (433)
T KOG0268|consen  142 HTILGK------SVYLGIDHHRKNSVFATCG-------------------EQIDIWDEQRDNPVSSMSWGADSISSVKFN  196 (433)
T ss_pred             eeeecc------ccccccccccccccccccC-------------------ceeeecccccCCccceeecCCCceeEEecC
Confidence            222111      1222333333344554422                   235555542 12223333444444566777


Q ss_pred             cCCCEEEEEe-CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          228 RDEDYVVVCE-SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       228 ~dg~~l~v~~-~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      |-...++.+. +.+ |..||+..... ..++...   -.++.|+..+++..+++...
T Consensus       197 pvETsILas~~sDrsIvLyD~R~~~P-l~KVi~~---mRTN~IswnPeafnF~~a~E  249 (433)
T KOG0268|consen  197 PVETSILASCASDRSIVLYDLRQASP-LKKVILT---MRTNTICWNPEAFNFVAANE  249 (433)
T ss_pred             CCcchheeeeccCCceEEEecccCCc-cceeeee---ccccceecCccccceeeccc
Confidence            7666666655 555 99999864321 1112221   13566777776655555443

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=2.1  Score=38.84  Aligned_cols=62  Identities=11%  Similarity=0.091  Sum_probs=38.5

Q ss_pred             CCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          219 YFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..|--++++|.|+.+-++--..|..|....++  ..+.+-+-..+-..+|..+++|.+.+++..
T Consensus       332 ~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~--~~~~~e~~h~~~Is~is~~~~g~~~atcGd  393 (420)
T KOG2096|consen  332 SEPVRLELSPSGDSLAVSFGSDLKVFASEDGK--DYPELEDIHSTTISSISYSSDGKYIATCGD  393 (420)
T ss_pred             CCceEEEeCCCCcEEEeecCCceEEEEcccCc--cchhHHHhhcCceeeEEecCCCcEEeeecc
Confidence            45667899999995555443338777654321  122222223345678999999988777754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=94.95  E-value=3.7  Score=39.52  Aligned_cols=138  Identities=15%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCcEEEEecCCeEEEEe-CC---eEEE-EEe---cCCCceeceEEcCCCc-EEEEeCCCceEEEc---CCC-eEEEEeec
Q 017520           89 NGVIYTATRDGWIKRLQ-DG---TWVN-WKF---IDSQTLVGLTSTKEGH-LIICDNANGLHKVS---EDG-VENFLSYV  155 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~-~g---~~~~-~~~---~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~---~~g-~~~~~~~~  155 (370)
                      ..++|++. .|-|..|+ .+   +.-. -.+   ..+... .-...+||+ |.|+.....+-.+|   ++- ++.-.   
T Consensus       431 trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiR-SckL~pdgrtLivGGeastlsiWDLAapTprikael---  505 (705)
T KOG0639|consen  431 TRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIR-SCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAEL---  505 (705)
T ss_pred             cceeEecC-CCeEEEeeccCCCCCCccccccccCccccee-eeEecCCCceEEeccccceeeeeeccCCCcchhhhc---
Confidence            45677765 34577777 22   1111 011   112233 445568885 67765544555555   222 22111   


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVV  234 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~  234 (370)
                      ... -.....|++.+|-++-|+.-                 .+|.|..||...+.+ +.+.........|.++.||..||
T Consensus       506 tss-apaCyALa~spDakvcFscc-----------------sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklW  567 (705)
T KOG0639|consen  506 TSS-APACYALAISPDAKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLW  567 (705)
T ss_pred             CCc-chhhhhhhcCCccceeeeec-----------------cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceee
Confidence            110 02456789999999988864                 357899999864433 22222233556788999999888


Q ss_pred             EEeCCc-EEEEEeCCC
Q 017520          235 VCESWK-CRKYWLKGE  249 (370)
Q Consensus       235 v~~~~~-l~~~~~~~~  249 (370)
                      .....+ |+.||+...
T Consensus       568 TGGlDntvRcWDlreg  583 (705)
T KOG0639|consen  568 TGGLDNTVRCWDLREG  583 (705)
T ss_pred             cCCCccceeehhhhhh
Confidence            888877 999998654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.85  E-value=3.4  Score=43.00  Aligned_cols=125  Identities=11%  Similarity=0.011  Sum_probs=65.8

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCC----------Cc------eeceEEcCCCcEEEEeC----------CCce
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----------QT------LVGLTSTKEGHLIICDN----------ANGL  140 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----------~p------~~gl~~d~~G~L~v~~~----------~~gi  140 (370)
                      +++||+++.+|+|+.+|  +|+...-....+          .+      .....+. ++.++++..          .+.|
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEE
Confidence            34899999999999999  787543211110          01      1012222 578888743          2337


Q ss_pred             EEEc-CCC-eEEEEeec---------CCcc-----cccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEE
Q 017520          141 HKVS-EDG-VENFLSYV---------NGSK-----LRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK  203 (370)
Q Consensus       141 ~~~~-~~g-~~~~~~~~---------~g~~-----~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~  203 (370)
                      +.+| ++| ...-....         .+..     -+....++.|++ |.+|+...+...++-..........-.+.|+.
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            7788 788 33322110         1110     011235788875 67888765422111000000011234678999


Q ss_pred             EeCCCCeEEEE
Q 017520          204 YDPSSNITTLV  214 (370)
Q Consensus       204 ~d~~t~~~~~~  214 (370)
                      +|.+|++..-.
T Consensus       419 LD~~TGk~~W~  429 (764)
T TIGR03074       419 LDATTGKERWV  429 (764)
T ss_pred             EeCCCCceEEE
Confidence            99999877544

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=94.79  E-value=1.3  Score=41.23  Aligned_cols=135  Identities=15%  Similarity=0.196  Sum_probs=76.6

Q ss_pred             ecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520           96 TRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (370)
Q Consensus        96 ~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~  170 (370)
                      ..+..|..|+  +|+...-.......+ ++.+..||.++++... ..|..++ +.| +..-.....|.   -+....+-.
T Consensus       151 g~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~---k~~Raifl~  226 (472)
T KOG0303|consen  151 GSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA---KPARAIFLA  226 (472)
T ss_pred             cCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC---CcceeEEec
Confidence            3567788888  665433333555667 8999999999997655 4677777 566 33222222332   233445556


Q ss_pred             CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceE---EccCCCEEEEEeCCc--EEEEE
Q 017520          171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA---LSRDEDYVVVCESWK--CRKYW  245 (370)
Q Consensus       171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~---~~~dg~~l~v~~~~~--l~~~~  245 (370)
                      +|.++ ++..++.             ....+..+|++.-+.-.....+...+|+.   +|+|.+.+|++.-+.  |.-|.
T Consensus       227 ~g~i~-tTGfsr~-------------seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE  292 (472)
T KOG0303|consen  227 SGKIF-TTGFSRM-------------SERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE  292 (472)
T ss_pred             cCcee-eeccccc-------------cccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence            77744 4332222             22334455553211111223344556664   588999999999887  66666


Q ss_pred             eCC
Q 017520          246 LKG  248 (370)
Q Consensus       246 ~~~  248 (370)
                      +..
T Consensus       293 it~  295 (472)
T KOG0303|consen  293 ITN  295 (472)
T ss_pred             ecC
Confidence            543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.78  E-value=1.5  Score=43.85  Aligned_cols=149  Identities=15%  Similarity=0.191  Sum_probs=84.9

Q ss_pred             CcceEEcCCCcEEEEecCCeEEE-Ee--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEE-c-CCC-eEEEEe
Q 017520           81 PEDASMDKNGVIYTATRDGWIKR-LQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKV-S-EDG-VENFLS  153 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~-~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~-~-~~g-~~~~~~  153 (370)
                      -.++++++|+...+....+++.+ |.  .|++ +.|......|...+++++.|.|.....-.|.+++ | ..+ .+.-. 
T Consensus        65 ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~f-  143 (775)
T KOG0319|consen   65 ITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSF-  143 (775)
T ss_pred             hheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEe-
Confidence            45577888775444443444444 44  6653 3333322334438999998866554333455444 4 555 32221 


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEEecCCCCccceEEccCCC
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLVADGFYFANGVALSRDED  231 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~~~~~~~p~gi~~~~dg~  231 (370)
                        .|.+ +-+..+.+.++-+.|+--+               +..++.++.||..++..  ..+........++++.+|+.
T Consensus       144 --kG~g-GvVssl~F~~~~~~~lL~s---------------g~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~  205 (775)
T KOG0319|consen  144 --KGHG-GVVSSLLFHPHWNRWLLAS---------------GATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL  205 (775)
T ss_pred             --cCCC-ceEEEEEeCCccchhheee---------------cCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc
Confidence              2211 2456677777654333322               23568888998865433  11122345567899999998


Q ss_pred             EEEEEeCCc-EEEEEeCC
Q 017520          232 YVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       232 ~l~v~~~~~-l~~~~~~~  248 (370)
                      .++-..++. +..||+..
T Consensus       206 ~~ls~~RDkvi~vwd~~~  223 (775)
T KOG0319|consen  206 ELLSVGRDKVIIVWDLVQ  223 (775)
T ss_pred             eEEEeccCcEEEEeehhh
Confidence            888778777 88888743

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=94.77  E-value=1.1  Score=42.02  Aligned_cols=151  Identities=13%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             CCCcCCCcceEEcCCCcEEEEe---cCCeEEEEeCCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC-CCeE
Q 017520           75 EGSVNHPEDASMDKNGVIYTAT---RDGWIKRLQDGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-DGVE  149 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~---~~g~I~~~~~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-~g~~  149 (370)
                      +|.-.+-.+|++-+||.|..+.   .-|+|+=+-+|+ +..+.......+ ++.|+|+|....+....+..++.. -+..
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~-~V~fsPNGy~lATgs~Dnt~kVWDLR~r~  378 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEIL-SVAFSPNGYHLATGSSDNTCKVWDLRMRS  378 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEeccccccee-eEeECCCceEEeecCCCCcEEEeeecccc
Confidence            3444566778999999887654   334454333665 444444556678 999999998877665666666652 1211


Q ss_pred             EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCCCccceEEc
Q 017520          150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALS  227 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~  227 (370)
                      .+. ..+.. .+.+.++.++| .|.+.+|.+                 -++.+-.|.+.+.+.- .+...-.....+.++
T Consensus       379 ~ly-~ipAH-~nlVS~Vk~~p~~g~fL~Tas-----------------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis  439 (459)
T KOG0272|consen  379 ELY-TIPAH-SNLVSQVKYSPQEGYFLVTAS-----------------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS  439 (459)
T ss_pred             cce-ecccc-cchhhheEecccCCeEEEEcc-----------------cCcceeeecCCCcccchhhcCCccceEEEEec
Confidence            111 11221 24677889998 466666644                 2355666666655442 223333345678888


Q ss_pred             cCCCEEEEEeCCcEEEEE
Q 017520          228 RDEDYVVVCESWKCRKYW  245 (370)
Q Consensus       228 ~dg~~l~v~~~~~l~~~~  245 (370)
                      +|+..+.-+...+-+++|
T Consensus       440 ~d~~~i~t~s~DRT~KLW  457 (459)
T KOG0272|consen  440 PDSQAIATSSFDRTIKLW  457 (459)
T ss_pred             cCCceEEEeccCceeeec
Confidence            999855555544444443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=94.76  E-value=3.3  Score=38.34  Aligned_cols=82  Identities=18%  Similarity=0.160  Sum_probs=50.0

Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-----------EEEEEeCCCCCCceeeeccCC-----C
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-----------CRKYWLKGERKGKLETFAENL-----P  262 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-----------l~~~~~~~~~~~~~~~~~~~~-----~  262 (370)
                      ++++.+|.++++..-..+....++ +++++|++.+|++++.-           |..||.++-.. ..+..+...     .
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~-~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP-TGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE-EEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc-cceEecCCcchheec
Confidence            699999999888765544444555 77899999999988521           77788665321 122222211     1


Q ss_pred             CCCCceeECCCCC-EEEEEec
Q 017520          263 GAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       263 g~p~~i~~d~~G~-lwv~~~~  282 (370)
                      .++..+.++.||+ +||-...
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~T  115 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFT  115 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEES
T ss_pred             ccccceEEccCCcEEEEEccC
Confidence            2466788888886 6666544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=94.68  E-value=1.1  Score=42.40  Aligned_cols=186  Identities=13%  Similarity=0.132  Sum_probs=99.9

Q ss_pred             CCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEE--Ee-----------------cCCCceeceEEcCCCcEEEEeCC
Q 017520           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNW--KF-----------------IDSQTLVGLTSTKEGHLIICDNA  137 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~--~~-----------------~~~~p~~gl~~d~~G~L~v~~~~  137 (370)
                      .+.++++.+++ ++|-++.+|.|.+++  .|+...+  ..                 .....+ .+++++||..++....
T Consensus       144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil-~~avS~Dgkylatgg~  222 (479)
T KOG0299|consen  144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL-TLAVSSDGKYLATGGR  222 (479)
T ss_pred             cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE-EEEEcCCCcEEEecCC
Confidence            46778887654 788888999999998  5542211  00                 111235 7899999987776544


Q ss_pred             CceE-EEc-CCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe-E
Q 017520          138 NGLH-KVS-EDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-T  211 (370)
Q Consensus       138 ~gi~-~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~-~  211 (370)
                      ...+ .++ .+.  ++.+    .+.. ..+.++++-. ..++|.+..                  +..+-.|+.+... +
T Consensus       223 d~~v~Iw~~~t~ehv~~~----~ghr-~~V~~L~fr~gt~~lys~s~------------------Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  223 DRHVQIWDCDTLEHVKVF----KGHR-GAVSSLAFRKGTSELYSASA------------------DRSVKVWSIDQLSYV  279 (479)
T ss_pred             CceEEEecCcccchhhcc----cccc-cceeeeeeecCccceeeeec------------------CCceEEEehhHhHHH
Confidence            4444 444 444  3332    2221 2455666632 235777643                  2345555543221 1


Q ss_pred             EEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHh
Q 017520          212 TLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKI  290 (370)
Q Consensus       212 ~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~  290 (370)
                      +.+........+|.....++.+-|....+ +..|.+...   +...|. ...+.++-+++-.+-++..|...|...+|.+
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee---sqlifr-g~~~sidcv~~In~~HfvsGSdnG~IaLWs~  355 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE---SQLIFR-GGEGSIDCVAFINDEHFVSGSDNGSIALWSL  355 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEecccc---ceeeee-CCCCCeeeEEEecccceeeccCCceEEEeee
Confidence            22222222233444444566566665666 555555321   222333 3455677788766677777776665444444


Q ss_pred             hhc
Q 017520          291 LNS  293 (370)
Q Consensus       291 ~~~  293 (370)
                      +-+
T Consensus       356 ~KK  358 (479)
T KOG0299|consen  356 LKK  358 (479)
T ss_pred             ccc
Confidence            333

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=94.61  E-value=3.7  Score=37.89  Aligned_cols=143  Identities=12%  Similarity=0.025  Sum_probs=80.8

Q ss_pred             ceEEcCCCcEEEEe--cCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEe
Q 017520           83 DASMDKNGVIYTAT--RDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS  153 (370)
Q Consensus        83 ~i~~d~~G~l~v~~--~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~  153 (370)
                      +++.+|+ +-|+++  .+..=+.|+  +|.+. .......... .+.|+.||.+.++....|.+.+.  .+|  ...+..
T Consensus        69 avsl~P~-~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~  146 (399)
T KOG0296|consen   69 AVSLHPN-NNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ  146 (399)
T ss_pred             EEEeCCC-CceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceEEEecCCCccEEEEEcccCceEEEeec
Confidence            3555664 344444  444444555  56522 2223344566 88999999888765445655554  445  222221


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEEecCCCCccceEEccCCCE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      ..     ..+.=|...|.+.+.++-+                 .+|.+|.|.... +..+++...-..-+.=.+.|||+.
T Consensus       147 e~-----~dieWl~WHp~a~illAG~-----------------~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr  204 (399)
T KOG0296|consen  147 EV-----EDIEWLKWHPRAHILLAGS-----------------TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKR  204 (399)
T ss_pred             cc-----CceEEEEecccccEEEeec-----------------CCCcEEEEECCCcceeeEecCCCCCcccccccCCCce
Confidence            11     1222245567777666633                 457888887654 444444332222233467899998


Q ss_pred             EEEEeCCc-EEEEEeCCC
Q 017520          233 VVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~  249 (370)
                      +......+ |.+|++++.
T Consensus       205 ~~tgy~dgti~~Wn~ktg  222 (399)
T KOG0296|consen  205 ILTGYDDGTIIVWNPKTG  222 (399)
T ss_pred             EEEEecCceEEEEecCCC
Confidence            88888877 888987654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=94.61  E-value=1.3  Score=45.74  Aligned_cols=153  Identities=14%  Similarity=0.169  Sum_probs=89.2

Q ss_pred             CCcCCCcceEEc-CCCcEEEEe--cCCeEEEEe--CCe-EEEEEecCCCceeceEEc------CCCcEEEEeCCCceEEE
Q 017520           76 GSVNHPEDASMD-KNGVIYTAT--RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTST------KEGHLIICDNANGLHKV  143 (370)
Q Consensus        76 ~~~~~P~~i~~d-~~G~l~v~~--~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d------~~G~L~v~~~~~gi~~~  143 (370)
                      |....|..+... .+.++..-+  ....||++|  .|+ ++.|......|...++-+      .....++|-..++++++
T Consensus       478 g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfri  557 (794)
T PF08553_consen  478 GKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRI  557 (794)
T ss_pred             CcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEe
Confidence            333456665554 355666665  346799999  676 455644332222133322      13367888777899999


Q ss_pred             c-C-CCeEEEEeecCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC
Q 017520          144 S-E-DGVENFLSYVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (370)
Q Consensus       144 ~-~-~g~~~~~~~~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~  220 (370)
                      | + .|-+.+...... ...+....++.+.+|+|-|++.                  .|.|..||.-+......+.++..
T Consensus       558 DpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~  619 (794)
T PF08553_consen  558 DPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGD  619 (794)
T ss_pred             ccCCCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCC
Confidence            9 3 341111111000 1112345678889999998864                  46777778654444455566655


Q ss_pred             c-cceEEccCCCEEEEEeCCcEEEEEe
Q 017520          221 A-NGVALSRDEDYVVVCESWKCRKYWL  246 (370)
Q Consensus       221 p-~gi~~~~dg~~l~v~~~~~l~~~~~  246 (370)
                      | .||.++.||++++.+...-|..++.
T Consensus       620 pI~~iDvt~DGkwilaTc~tyLlLi~t  646 (794)
T PF08553_consen  620 PIIGIDVTADGKWILATCKTYLLLIDT  646 (794)
T ss_pred             CeeEEEecCCCcEEEEeecceEEEEEE
Confidence            5 6899999999655554444555553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.60  E-value=0.88  Score=42.85  Aligned_cols=98  Identities=21%  Similarity=0.384  Sum_probs=52.3

Q ss_pred             CcceEE--c-CCCcEE--EEecCCeEEEEe-----CCeE----EEEEecCCCceeceEEc-CCCcEEEEeCCCceEEEc-
Q 017520           81 PEDASM--D-KNGVIY--TATRDGWIKRLQ-----DGTW----VNWKFIDSQTLVGLTST-KEGHLIICDNANGLHKVS-  144 (370)
Q Consensus        81 P~~i~~--d-~~G~l~--v~~~~g~I~~~~-----~g~~----~~~~~~~~~p~~gl~~d-~~G~L~v~~~~~gi~~~~-  144 (370)
                      |.++|.  + .+|.+|  +...+|.+.+|.     +|.+    .+-.....++- |+++| ..|.||+++...||++++ 
T Consensus       158 ~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~y~A  236 (381)
T PF02333_consen  158 PYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWRYDA  236 (381)
T ss_dssp             EEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEEEES
T ss_pred             ceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEEEec
Confidence            455665  3 356555  455778777665     3432    11123345677 88887 466899999999999999 


Q ss_pred             -CCC--eEEEEeecCCccc-ccccceEE--cCC--CcEEEEeC
Q 017520          145 -EDG--VENFLSYVNGSKL-RFANDVVE--ASD--GSLYFTVS  179 (370)
Q Consensus       145 -~~g--~~~~~~~~~g~~~-~~~~~l~~--d~~--G~l~v~d~  179 (370)
                       +++  ...++....+..+ ..+.+|++  ..+  |.|.+++.
T Consensus       237 ep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  237 EPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             SCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             CCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence             333  3333333233222 24555655  333  45666654

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.57  E-value=4  Score=39.00  Aligned_cols=169  Identities=12%  Similarity=0.161  Sum_probs=96.1

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEE--ecCCCceeceEEcC-CCcEEEEeCCCceEEEcCCC-e-EEEEeecCCcccc
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWK--FIDSQTLVGLTSTK-EGHLIICDNANGLHKVSEDG-V-ENFLSYVNGSKLR  161 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~--~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~~~g-~-~~~~~~~~g~~~~  161 (370)
                      ++.+++...|+++.++.  +.....+.  ....... +..+.+ ++.+.++..+.|..++.... . ..+.....|.   
T Consensus       122 d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~---  197 (487)
T KOG0310|consen  122 DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGC---  197 (487)
T ss_pred             CCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCC---
Confidence            45666655666677765  33322211  1222344 444443 45677776666766665322 1 2222222343   


Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--ecCCCCccceEEccCCCEEEEEeCC
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      -+..+..-|.|.+.++.++                  ..+-.||.-+|.....  ....+....+.+..++..|+-+.-.
T Consensus       198 pVe~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD  259 (487)
T KOG0310|consen  198 PVESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLD  259 (487)
T ss_pred             ceeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccc
Confidence            3456677788888888543                  4677888764433221  2234456788898999888888888


Q ss_pred             c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520          240 K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL  283 (370)
Q Consensus       240 ~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~  283 (370)
                      + +.+|+...-+.  ...+  ..++-.=.+++.+++ ++++|...+
T Consensus       260 ~~VKVfd~t~~Kv--v~s~--~~~~pvLsiavs~dd~t~viGmsnG  301 (487)
T KOG0310|consen  260 RHVKVFDTTNYKV--VHSW--KYPGPVLSIAVSPDDQTVVIGMSNG  301 (487)
T ss_pred             cceEEEEccceEE--EEee--ecccceeeEEecCCCceEEEecccc
Confidence            8 88898543221  1111  223323346676655 799998776

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=94.56  E-value=2.1  Score=38.47  Aligned_cols=140  Identities=10%  Similarity=0.076  Sum_probs=81.9

Q ss_pred             cceEEcC-CCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecC
Q 017520           82 EDASMDK-NGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVN  156 (370)
Q Consensus        82 ~~i~~d~-~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~  156 (370)
                      .+|-+++ .++|.+++++|.+..++ .. ...... ..+.|++.-+|.++-.+|+++.++.|.++| .++ ...+.... 
T Consensus        17 S~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~-   94 (323)
T KOG1036|consen   17 SSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHD-   94 (323)
T ss_pred             eeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCC-
Confidence            3455554 57899999999998888 22 222111 223454477887777899998888899998 444 33332211 


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc-eEEccCCCEEEE
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVV  235 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g-i~~~~dg~~l~v  235 (370)
                          ..+..|.....-...|+.+                 .+..|-.||+.....   ...+..++- -+.+-.++.|+|
T Consensus        95 ----~~i~ci~~~~~~~~vIsgs-----------------WD~~ik~wD~R~~~~---~~~~d~~kkVy~~~v~g~~LvV  150 (323)
T KOG1036|consen   95 ----EGIRCIEYSYEVGCVISGS-----------------WDKTIKFWDPRNKVV---VGTFDQGKKVYCMDVSGNRLVV  150 (323)
T ss_pred             ----CceEEEEeeccCCeEEEcc-----------------cCccEEEEecccccc---ccccccCceEEEEeccCCEEEE
Confidence                1233344444334445533                 456788888864211   111222222 244556677888


Q ss_pred             EeCCc-EEEEEeC
Q 017520          236 CESWK-CRKYWLK  247 (370)
Q Consensus       236 ~~~~~-l~~~~~~  247 (370)
                      +..++ +..||+.
T Consensus       151 g~~~r~v~iyDLR  163 (323)
T KOG1036|consen  151 GTSDRKVLIYDLR  163 (323)
T ss_pred             eecCceEEEEEcc
Confidence            77777 8899875

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=94.56  E-value=4.5  Score=38.61  Aligned_cols=160  Identities=13%  Similarity=0.065  Sum_probs=91.2

Q ss_pred             ecCCeEEEEe---CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC--C-C-eEEEEeecCCcccccccceEE
Q 017520           96 TRDGWIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE--D-G-VENFLSYVNGSKLRFANDVVE  168 (370)
Q Consensus        96 ~~~g~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~--~-g-~~~~~~~~~g~~~~~~~~l~~  168 (370)
                      +.+|.|+.+.   +.-..++....+... +|.+++.|.|+....+.+-+++..  + + ..-+...     ...+..+-.
T Consensus       336 ~td~~i~V~kv~~~~P~~t~~GH~g~V~-alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~H-----skei~t~~w  409 (524)
T KOG0273|consen  336 STDGCIHVCKVGEDRPVKTFIGHHGEVN-ALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAH-----SKEIYTIKW  409 (524)
T ss_pred             CCCceEEEEEecCCCcceeeecccCceE-EEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhh-----ccceeeEee
Confidence            3677666665   344556656667778 999999999998877777666651  1 1 2111000     001111222


Q ss_pred             cC---------CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeC
Q 017520          169 AS---------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       169 d~---------~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      .|         +|...++.+                 .++.|..||...+.....+.. ......++++++|+.+.-.+.
T Consensus       410 sp~g~v~~n~~~~~~l~sas-----------------~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  410 SPTGPVTSNPNMNLMLASAS-----------------FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             cCCCCccCCCcCCceEEEee-----------------cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence            22         122222221                 456788888877765544433 334468999999997777777


Q ss_pred             Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          239 WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       239 ~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++ |..++.+..+  .++.+.  ..+....++...+|+...++..
T Consensus       473 dg~V~iws~~~~~--l~~s~~--~~~~Ifel~Wn~~G~kl~~~~s  513 (524)
T KOG0273|consen  473 DGCVHIWSTKTGK--LVKSYQ--GTGGIFELCWNAAGDKLGACAS  513 (524)
T ss_pred             CCeeEeccccchh--eeEeec--CCCeEEEEEEcCCCCEEEEEec
Confidence            77 6555544322  123332  1223455788889987777654

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=94.54  E-value=1.6  Score=39.66  Aligned_cols=145  Identities=9%  Similarity=0.019  Sum_probs=79.9

Q ss_pred             cCCCcEEEEe-cCCeEEEEe--CCeEEEEE----e--cCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEe
Q 017520           87 DKNGVIYTAT-RDGWIKRLQ--DGTWVNWK----F--IDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLS  153 (370)
Q Consensus        87 d~~G~l~v~~-~~g~I~~~~--~g~~~~~~----~--~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~  153 (370)
                      +++-.+|..+ .+.-|..|+  +|+.+--.    .  .-...+ ++.|++||.-.++....-|..++  +.|  ..+...
T Consensus       120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCeEeecccceEEEeeccCCCCCCcchhh
Confidence            4566778666 566688888  78754321    1  112356 89999999755554455566666  455  222221


Q ss_pred             ecCCc--ccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          154 YVNGS--KLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       154 ~~~g~--~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      ...+.  ...-+..+++.|-. .++..-+   |+            ..-+||+.|.. +-...+........-+.+.+||
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gs---Y~------------q~~giy~~~~~-~pl~llggh~gGvThL~~~edG  262 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGS---YG------------QRVGIYNDDGR-RPLQLLGGHGGGVTHLQWCEDG  262 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeec---cc------------ceeeeEecCCC-CceeeecccCCCeeeEEeccCc
Confidence            11111  11233456666643 2332211   11            11245555432 3333333333445567899999


Q ss_pred             CEEEEEeCCc--EEEEEeCC
Q 017520          231 DYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       231 ~~l~v~~~~~--l~~~~~~~  248 (370)
                      +.+|...+..  |.++|+.-
T Consensus       263 n~lfsGaRk~dkIl~WDiR~  282 (406)
T KOG2919|consen  263 NKLFSGARKDDKILCWDIRY  282 (406)
T ss_pred             CeecccccCCCeEEEEeehh
Confidence            9999988766  99999753

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.52  E-value=6.1  Score=39.98  Aligned_cols=148  Identities=14%  Similarity=0.085  Sum_probs=79.7

Q ss_pred             CCCcceEEcCCCcE--EEEe-------cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-C-
Q 017520           79 NHPEDASMDKNGVI--YTAT-------RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-E-  145 (370)
Q Consensus        79 ~~P~~i~~d~~G~l--~v~~-------~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~-  145 (370)
                      ..+.+.++.++|.-  |+.+       ....|+..+ ++..+.+.. ...-. ...+++|| .||+......+.++. . 
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEeccC
Confidence            45677888888853  4442       123577766 554444432 22223 56789995 588875343344444 2 


Q ss_pred             -CC-eEEEEeecCCcc----cccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEE---EeCCCCeEEE--
Q 017520          146 -DG-VENFLSYVNGSK----LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK---YDPSSNITTL--  213 (370)
Q Consensus       146 -~g-~~~~~~~~~g~~----~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~---~d~~t~~~~~--  213 (370)
                       ++ +..+ ....+..    -..+..+.+++||. +.+...                   ++|+.   ...+.+..+.  
T Consensus       428 ~~gql~~~-~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~-------------------g~v~Va~Vvr~~~G~~~l~~  487 (591)
T PRK13616        428 ATGQLART-PVDASAVASRVPGPISELQLSRDGVRAAMIIG-------------------GKVYLAVVEQTEDGQYALTN  487 (591)
T ss_pred             CCceEEEE-eccCchhhhccCCCcCeEEECCCCCEEEEEEC-------------------CEEEEEEEEeCCCCceeecc
Confidence             22 2211 1101110    13578899999994 555432                   23333   2223343222  


Q ss_pred             ---EecCCCC-ccceEEccCCCEEEEEeCCc---EEEEEeCCC
Q 017520          214 ---VADGFYF-ANGVALSRDEDYVVVCESWK---CRKYWLKGE  249 (370)
Q Consensus       214 ---~~~~~~~-p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~  249 (370)
                         +...+.. +..+.|..++. |++.....   ++++.++|.
T Consensus       488 ~~~l~~~l~~~~~~l~W~~~~~-L~V~~~~~~~~v~~v~vDG~  529 (591)
T PRK13616        488 PREVGPGLGDTAVSLDWRTGDS-LVVGRSDPEHPVWYVNLDGS  529 (591)
T ss_pred             cEEeecccCCccccceEecCCE-EEEEecCCCCceEEEecCCc
Confidence               3344444 47788988887 66665543   888998876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=94.49  E-value=6.5  Score=40.23  Aligned_cols=182  Identities=11%  Similarity=0.148  Sum_probs=99.4

Q ss_pred             CCceeceEEcCCCcE-EEEeCCCceEEEc-CCC-e-EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520          117 SQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (370)
Q Consensus       117 ~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g-~-~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~  192 (370)
                      .... +++++.=|+. +|+...+-|-+++ ..| . ..+... + ..-..+.++++|.-+++.++...            
T Consensus       449 ~~~~-av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-~-ah~~~V~gla~D~~n~~~vsa~~------------  513 (910)
T KOG1539|consen  449 INAT-AVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-P-AHKGEVTGLAVDGTNRLLVSAGA------------  513 (910)
T ss_pred             cceE-EEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-c-cccCceeEEEecCCCceEEEccC------------
Confidence            3455 7888888885 5555445588888 777 3 333211 1 11246788999998988888652            


Q ss_pred             cccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520          193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINL  270 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  270 (370)
                           .|-+-.||-+.+....-..-...+.++..+.... ++....+.  |..||..+.+.  .+.|- ...+....+++
T Consensus       514 -----~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~-l~a~~~ddf~I~vvD~~t~kv--vR~f~-gh~nritd~~F  584 (910)
T KOG1539|consen  514 -----DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSD-LLAIALDDFSIRVVDVVTRKV--VREFW-GHGNRITDMTF  584 (910)
T ss_pred             -----cceEEEEecCCcceeeeeccCCCcceeeeeehhh-hhhhhcCceeEEEEEchhhhh--hHHhh-ccccceeeeEe
Confidence                 3445556665443222222234566777776665 44433333  89999755432  22232 34455778999


Q ss_pred             CCCCCEEEEE-ecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeC
Q 017520          271 APDGTFWIAI-IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD  335 (370)
Q Consensus       271 d~~G~lwv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~  335 (370)
                      ++||+..+.. ..+....+|....            ..+..+ .....-.-+.++|+|+.+.+-|.
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~------------~lID~~-~vd~~~~sls~SPngD~LAT~Hv  637 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTG------------TLIDGL-LVDSPCTSLSFSPNGDFLATVHV  637 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCc------------ceeeeE-ecCCcceeeEECCCCCEEEEEEe
Confidence            9999754443 3343333332110            001100 01111234677788888777665

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.44  E-value=3.9  Score=38.46  Aligned_cols=82  Identities=13%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc------EEEEEeC-CCCCCceeeeccCCCCCCC-c
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK------CRKYWLK-GERKGKLETFAENLPGAPD-N  267 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~------l~~~~~~-~~~~~~~~~~~~~~~g~p~-~  267 (370)
                      +-..|+.++.+++..+.+..+-... .-+.++.+++.+|+..+..      |++++++ +   +..+++...  .... .
T Consensus       258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~--~~~~~~  332 (353)
T PF00930_consen  258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCE--DGDHYS  332 (353)
T ss_dssp             SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTT--SSTTEE
T ss_pred             CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCC--CCCceE
Confidence            4468999999988766555444444 3467899999999888753      8999887 4   344554322  2233 6


Q ss_pred             eeECCCCCEEEEEecC
Q 017520          268 INLAPDGTFWIAIIKL  283 (370)
Q Consensus       268 i~~d~~G~lwv~~~~~  283 (370)
                      +.++++|++++-...+
T Consensus       333 ~~~Spdg~y~v~~~s~  348 (353)
T PF00930_consen  333 ASFSPDGKYYVDTYSG  348 (353)
T ss_dssp             EEE-TTSSEEEEEEES
T ss_pred             EEECCCCCEEEEEEcC
Confidence            8899999999887665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=94.40  E-value=0.046  Score=29.37  Aligned_cols=18  Identities=17%  Similarity=0.198  Sum_probs=14.2

Q ss_pred             CCcceEEcCCCcEEEEec
Q 017520           80 HPEDASMDKNGVIYTATR   97 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~   97 (370)
                      ...+|+.|++|+||+|+.
T Consensus         6 ~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    6 NIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             CEEEEEE-TTSCEEEEET
T ss_pred             eEEEEEEcCCcCEEEEeC
Confidence            456789999999999984

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=94.26  E-value=1.7  Score=41.75  Aligned_cols=80  Identities=14%  Similarity=0.257  Sum_probs=48.2

Q ss_pred             CCceEEEEeCCCCeEEEEe-cCCCCc-cceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520          197 PHGQLLKYDPSSNITTLVA-DGFYFA-NGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAP  272 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~-~~~~~p-~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  272 (370)
                      ..|.|..||..+.....-+ .....| .||+++|.+..|+++--..  |+.||....+..  ..+....|  -..+++.+
T Consensus       185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--~~l~y~~P--lstvaf~~  260 (673)
T KOG4378|consen  185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--DRLTYSHP--LSTVAFSE  260 (673)
T ss_pred             cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--ceeeecCC--cceeeecC
Confidence            4578888987633221111 112233 6999999888777776544  999997644322  22222222  35688999


Q ss_pred             CCCEEEEE
Q 017520          273 DGTFWIAI  280 (370)
Q Consensus       273 ~G~lwv~~  280 (370)
                      +|.+.++-
T Consensus       261 ~G~~L~aG  268 (673)
T KOG4378|consen  261 CGTYLCAG  268 (673)
T ss_pred             CceEEEee
Confidence            99766554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.13  E-value=4.4  Score=36.81  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=24.2

Q ss_pred             CCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe
Q 017520           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ  105 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~  105 (370)
                      +..+.+|.+|++.+.|.+||++ ..+....++
T Consensus        19 Dp~L~N~WGia~~p~~~~WVadngT~~~TlYd   50 (336)
T TIGR03118        19 DPGLRNAWGLSYRPGGPFWVANTGTGTATLYV   50 (336)
T ss_pred             CccccccceeEecCCCCEEEecCCcceEEeec
Confidence            4457899999999999999998 445455555

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.06  E-value=2.2  Score=44.42  Aligned_cols=97  Identities=12%  Similarity=0.044  Sum_probs=62.4

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCC---C-eEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSED---G-VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~---g-~~~~  151 (370)
                      .--+++.++++.+.+.- -++.|..|+  +.+ .+++....+.+- |+.+||-|..+....+.+.+++.++   | .+.+
T Consensus       131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             ccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence            34556777877666554 788899999  333 445555666777 9999999998888777776666632   3 2333


Q ss_pred             EeecCCc-ccccccceEEcCCCcEEEE
Q 017520          152 LSYVNGS-KLRFANDVVEASDGSLYFT  177 (370)
Q Consensus       152 ~~~~~g~-~~~~~~~l~~d~~G~l~v~  177 (370)
                      ...++.. ...+...+..+|||....+
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las  236 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLAS  236 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecc
Confidence            2222211 1235556788899986655

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.04  E-value=4.1  Score=36.16  Aligned_cols=115  Identities=14%  Similarity=0.151  Sum_probs=67.7

Q ss_pred             CCCceeceEEcCC-CcEEEEeCCCc-eEEEcCC-C-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceec
Q 017520          116 DSQTLVGLTSTKE-GHLIICDNANG-LHKVSED-G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       116 ~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~~~~-g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~  191 (370)
                      .++.. .+++.|. |.++....... |...+.. + .-.......+..-+.+..++..|.|+ |++..+           
T Consensus        14 ~~r~W-~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aS-----------   80 (312)
T KOG0645|consen   14 KDRVW-SVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASAS-----------   80 (312)
T ss_pred             CCcEE-EEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEee-----------
Confidence            34566 7888876 76555443433 4444432 3 11111222233335788999999999 455443           


Q ss_pred             ccccCCCceEEEEeCCCCeEEEEe---cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          192 ILEGKPHGQLLKYDPSSNITTLVA---DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~~~~~~~---~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                           .+..+..+....+.++.+.   ..-.....++++.+|+.|-.+.++. |+.+..+.
T Consensus        81 -----FD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~de  136 (312)
T KOG0645|consen   81 -----FDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDE  136 (312)
T ss_pred             -----ccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecC
Confidence                 2344555544445555432   2234456899999999888888887 77777653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=93.85  E-value=1.6  Score=42.23  Aligned_cols=102  Identities=15%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG  274 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  274 (370)
                      ..++++|.++++...+..-........++|||+.+.++....    |+.+|+.+..   ...+ .+..+.-..=...+||
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---~~~L-t~~~gi~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---LPRL-TNGFGINTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---ceec-ccCCccccCccCCCCC
Confidence            568999998887776665333344568999999888876544    9999987753   2222 2333333334467788


Q ss_pred             C--EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCC
Q 017520          275 T--FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPT  337 (370)
Q Consensus       275 ~--lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~  337 (370)
                      .  +|++..+++                                 ..|+.++.+|+..+.+....
T Consensus       294 ~~ivf~Sdr~G~---------------------------------p~I~~~~~~g~~~~riT~~~  325 (425)
T COG0823         294 SKIVFTSDRGGR---------------------------------PQIYLYDLEGSQVTRLTFSG  325 (425)
T ss_pred             CEEEEEeCCCCC---------------------------------cceEEECCCCCceeEeeccC
Confidence            5  444444442                                 24788888887766665433

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.82  E-value=5.1  Score=38.34  Aligned_cols=61  Identities=23%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             ccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCce--eeecc--------------CCCCCCCceeECCCC-CEEEEEe
Q 017520          221 ANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKL--ETFAE--------------NLPGAPDNINLAPDG-TFWIAII  281 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~--~~~~~--------------~~~g~p~~i~~d~~G-~lwv~~~  281 (370)
                      +.-|.+|-|.++||+++...  |+.||++.+..-..  +++..              .+.|.|.-+.++.|| ++|+++.
T Consensus       314 itDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  314 ITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             ---EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             eEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            46688999999999999876  99999987631111  11111              233457778899999 5999864

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.79  E-value=0.73  Score=41.48  Aligned_cols=146  Identities=16%  Similarity=0.213  Sum_probs=78.8

Q ss_pred             cceEEcCCCcEEEE-ecCCeEEEEe-CC-----eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-EcCCCeEEEEe
Q 017520           82 EDASMDKNGVIYTA-TRDGWIKRLQ-DG-----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VSEDGVENFLS  153 (370)
Q Consensus        82 ~~i~~d~~G~l~v~-~~~g~I~~~~-~g-----~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~~~g~~~~~~  153 (370)
                      .++.+-+...|.++ +.++.|.-|| ..     .++.+.+ ..... +|.+.|.|........+-+.+ +|-+-.+-++.
T Consensus       176 n~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd-~~~vr-siSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs  253 (430)
T KOG0640|consen  176 NDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD-TEPVR-SISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS  253 (430)
T ss_pred             cceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhc-cceee-eEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence            34555554445543 4677777676 21     1222211 22234 899999998555444554444 33111233333


Q ss_pred             ecCC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCCCccceEEccC
Q 017520          154 YVNG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFYFANGVALSRD  229 (370)
Q Consensus       154 ~~~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~~p~gi~~~~d  229 (370)
                      ..+. ..-..++++-..+.|++|++.+                 .+|.|-.||.-++++...   +.+....-...|..+
T Consensus       254 anPd~qht~ai~~V~Ys~t~~lYvTaS-----------------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn  316 (430)
T KOG0640|consen  254 ANPDDQHTGAITQVRYSSTGSLYVTAS-----------------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN  316 (430)
T ss_pred             cCcccccccceeEEEecCCccEEEEec-----------------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence            2222 2234678888999999999965                 456777777655544221   122223334567788


Q ss_pred             CCEEEEEeCCc-EEEEEe
Q 017520          230 EDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~  246 (370)
                      |++++-+.... +..|.+
T Consensus       317 ~kyiLsSG~DS~vkLWEi  334 (430)
T KOG0640|consen  317 GKYILSSGKDSTVKLWEI  334 (430)
T ss_pred             CeEEeecCCcceeeeeee
Confidence            88666555555 333443

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=93.78  E-value=0.099  Score=28.03  Aligned_cols=21  Identities=24%  Similarity=0.283  Sum_probs=16.5

Q ss_pred             ccccccceEEcCCCcEEEEeC
Q 017520          159 KLRFANDVVEASDGSLYFTVS  179 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~  179 (370)
                      +.+.+.+|..|++|+|||++.
T Consensus         3 ~~n~I~~i~~D~~G~lWigT~   23 (24)
T PF07494_consen    3 PNNNIYSIYEDSDGNLWIGTY   23 (24)
T ss_dssp             SSSCEEEEEE-TTSCEEEEET
T ss_pred             CCCeEEEEEEcCCcCEEEEeC
Confidence            345788999999999999963

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.63  E-value=10  Score=39.35  Aligned_cols=148  Identities=16%  Similarity=0.174  Sum_probs=89.8

Q ss_pred             CCCcceEEcCCCcEEE--EecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CCC--eE
Q 017520           79 NHPEDASMDKNGVIYT--ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-EDG--VE  149 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v--~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~g--~~  149 (370)
                      ....++++-|. +-|+  +-.+|.|.-||  =|. +..|....|... |+.|.+.+-|+|+..+.-..+ ++ ++.  +-
T Consensus        10 sRvKglsFHP~-rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qplFVSGGDDykIkVWnYk~rrclf   87 (1202)
T KOG0292|consen   10 SRVKGLSFHPK-RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF   87 (1202)
T ss_pred             ccccceecCCC-CCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCeEEecCCccEEEEEecccceehh
Confidence            34556777765 3554  33788888888  233 556667778778 999999999999865543333 33 322  11


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC-CccceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-FANGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-~p~gi~~~~  228 (370)
                      .+...     +.++..+.+.+. .=||-..|                .+.+|..||-++.+....+++.. ......|.|
T Consensus        88 tL~GH-----lDYVRt~~FHhe-yPWIlSAS----------------DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhp  145 (1202)
T KOG0292|consen   88 TLLGH-----LDYVRTVFFHHE-YPWILSAS----------------DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHP  145 (1202)
T ss_pred             hhccc-----cceeEEeeccCC-CceEEEcc----------------CCCeEEEEeccCCceEEEEecCceEEEeeccCC
Confidence            11111     234555555443 44665544                44667777777666655555432 344556788


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCCCC
Q 017520          229 DEDYVVVCESWK--CRKYWLKGERK  251 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~~~  251 (370)
                      ..+ ++|+.+-.  |++||++|-+.
T Consensus       146 tED-lIVSaSLDQTVRVWDisGLRk  169 (1202)
T KOG0292|consen  146 TED-LIVSASLDQTVRVWDISGLRK  169 (1202)
T ss_pred             ccc-eEEEecccceEEEEeecchhc
Confidence            777 66665544  99999987543

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=93.62  E-value=4.3  Score=40.57  Aligned_cols=141  Identities=13%  Similarity=0.210  Sum_probs=75.2

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEeCCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeecC
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQDGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVN  156 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~~  156 (370)
                      +-.++..+.++.+..|++|..+.+|..|+.. .+........ .++.-+++ .|++.......++...|  ++.+...  
T Consensus       103 nVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVW-Av~~l~e~-~~vTgsaDKtIklWk~~~~l~tf~gH--  178 (745)
T KOG0301|consen  103 NVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVW-AVASLPEN-TYVTGSADKTIKLWKGGTLLKTFSGH--  178 (745)
T ss_pred             ceeeeecCCcCceEecccccceEEecchhhhcccCCcchhee-eeeecCCC-cEEeccCcceeeeccCCchhhhhccc--
Confidence            4555666677777777777666666533211 1222222345 56666666 66655455666666545  4444221  


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEE
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~  236 (370)
                         ...+.++++-+++.+. +.+                 .+|.|..++.++..+......-.+...+....+++.+.-+
T Consensus       179 ---tD~VRgL~vl~~~~fl-Scs-----------------NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~  237 (745)
T KOG0301|consen  179 ---TDCVRGLAVLDDSHFL-SCS-----------------NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVST  237 (745)
T ss_pred             ---hhheeeeEEecCCCeE-eec-----------------CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEe
Confidence               1356778887776643 322                 3466777777544444443333444555544444535555


Q ss_pred             eCCcEEEEE
Q 017520          237 ESWKCRKYW  245 (370)
Q Consensus       237 ~~~~l~~~~  245 (370)
                      ..++-.|+|
T Consensus       238 gEDrtlriW  246 (745)
T KOG0301|consen  238 GEDRTLRIW  246 (745)
T ss_pred             cCCceEEEe
Confidence            555533344

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=93.50  E-value=3.1  Score=40.89  Aligned_cols=113  Identities=12%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe-CCeEEE-EEecCCC---ceeceEEcCCCcEEEEeC--------------CCceEEEc
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ-DGTWVN-WKFIDSQ---TLVGLTSTKEGHLIICDN--------------ANGLHKVS  144 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~-~g~~~~-~~~~~~~---p~~gl~~d~~G~L~v~~~--------------~~gi~~~~  144 (370)
                      +..-++|.++++.. ..+..++ .|++.. +..+.+.   -+ .+...++|++++...              ...|+.++
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            45567888888775 6788888 776433 3222322   46 788889998666443              23688888


Q ss_pred             CCC-eEEEEee---cCC--------------------cccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCc
Q 017520          145 EDG-VENFLSY---VNG--------------------SKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHG  199 (370)
Q Consensus       145 ~~g-~~~~~~~---~~g--------------------~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  199 (370)
                      ++| +......   ...                    .---+.|++..++ ++.|.++..                 ...
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR-----------------~~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR-----------------HQS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET-----------------TT-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC-----------------cce
Confidence            778 4333211   100                    0113678899988 678888854                 335


Q ss_pred             eEEEEeCCCCeEEEEe
Q 017520          200 QLLKYDPSSNITTLVA  215 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~  215 (370)
                      .|+++|..++++....
T Consensus       294 ~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  294 AVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             EEEEEE-TTS-EEEEE
T ss_pred             EEEEEECCCCcEEEEe
Confidence            7999998788776554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=93.50  E-value=8.5  Score=38.01  Aligned_cols=94  Identities=12%  Similarity=0.113  Sum_probs=55.4

Q ss_pred             CCceEEEEeCCCCeEEE-EecCCCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-
Q 017520          197 PHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-  274 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-  274 (370)
                      .+-+|+.........+. +...-..+..+.|.|-.-.++|+....|..||+....+  ++.+. +..-..+.+++++.| 
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel--vKkL~-tg~kwiS~msihp~GD  620 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL--VKKLL-TGSKWISSMSIHPNGD  620 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH--HHHHh-cCCeeeeeeeecCCCC
Confidence            44566666654322221 11223356778899988888888876799999754311  11111 111135667777777 


Q ss_pred             CEEEEEecCchhHHHhhhc
Q 017520          275 TFWIAIIKLDARRMKILNS  293 (370)
Q Consensus       275 ~lwv~~~~~~~~~~~~~~~  293 (370)
                      |+.++....+.-++|+...
T Consensus       621 nli~gs~d~k~~WfDldls  639 (733)
T KOG0650|consen  621 NLILGSYDKKMCWFDLDLS  639 (733)
T ss_pred             eEEEecCCCeeEEEEcccC
Confidence            7888888777666665444

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=93.45  E-value=6.3  Score=36.40  Aligned_cols=119  Identities=12%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             eEEEEEecCCCceeceEEcCCCcEEEEeCCCce-EEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCC
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL  184 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi-~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~  184 (370)
                      ....|........ .+..+|+.+|.++.....+ +.++ .+| +...   ..|.+ .++..+.++.||.+..|-.     
T Consensus        56 S~~tF~~H~~svF-avsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e---ltgHK-DSVt~~~FshdgtlLATGd-----  125 (399)
T KOG0296|consen   56 SLVTFDKHTDSVF-AVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE---LTGHK-DSVTCCSFSHDGTLLATGD-----  125 (399)
T ss_pred             ceeehhhcCCceE-EEEeCCCCceEEecCCCceEEEEEccCCcceeE---ecCCC-CceEEEEEccCceEEEecC-----
Confidence            3444444455566 7888885555554433333 3333 345 2211   12322 3677889999998777732     


Q ss_pred             CccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          185 PHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       185 ~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                                  -.|.|..+..+++..+..+. ......-+.++|.+..++.....+ +|.|.+..
T Consensus       126 ------------msG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  126 ------------MSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             ------------CCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence                        34778888887776554332 333345577889888666666666 99998764

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=93.38  E-value=0.27  Score=35.83  Aligned_cols=64  Identities=11%  Similarity=0.044  Sum_probs=43.8

Q ss_pred             CCcceEEcCCCc----------EEEEecCCeEEEEeCCeEEEEEecCCCceeceEEcCCC-cEEEEeCC-CceEEEc
Q 017520           80 HPEDASMDKNGV----------IYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS  144 (370)
Q Consensus        80 ~P~~i~~d~~G~----------l~v~~~~g~I~~~~~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~  144 (370)
                      +|++.++..|+.          .|.+..-|.|..++.++.+........|+ ||..++++ .|||++.. +.|..+.
T Consensus         7 G~~sFy~TNDhyf~~~~l~~lE~~l~~~~~~Vvyyd~~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~~~I~vy~   82 (86)
T PF01731_consen    7 GPDSFYVTNDHYFTDPFLRLLETYLGLPWGNVVYYDGKEVKVVASGFSFAN-GIAISPDKKYLYVASSLAHSIHVYK   82 (86)
T ss_pred             CcCcEEEECchhhCcHHHHHHHHHhcCCCceEEEEeCCEeEEeeccCCCCc-eEEEcCCCCEEEEEeccCCeEEEEE
Confidence            677777766542          23334456788888666666666667899 99999987 59999876 3455544

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=93.28  E-value=0.75  Score=42.25  Aligned_cols=141  Identities=11%  Similarity=0.090  Sum_probs=75.0

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC--CC-eEEEEeecC
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE--DG-VENFLSYVN  156 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~--~g-~~~~~~~~~  156 (370)
                      -.+|+++....+++|+ +..|-+|. +|............+ ||--...++++++. +..|-.+|.  +- ++.+.-.. 
T Consensus       112 V~Gi~v~~~~~~tvgd-DKtvK~wk~~~~p~~tilg~s~~~-gIdh~~~~~~FaTc-Ge~i~IWD~~R~~Pv~smswG~-  187 (433)
T KOG0268|consen  112 VRGICVTQTSFFTVGD-DKTVKQWKIDGPPLHTILGKSVYL-GIDHHRKNSVFATC-GEQIDIWDEQRDNPVSSMSWGA-  187 (433)
T ss_pred             eeeEEecccceEEecC-CcceeeeeccCCcceeeecccccc-cccccccccccccc-CceeeecccccCCccceeecCC-
Confidence            4567888755666665 56677777 664322222233334 66555556666644 233555552  22 33332111 


Q ss_pred             CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEE
Q 017520          157 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV  235 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v  235 (370)
                          ..+..+-+.|-.+ |..+..                 .++.|+.||..+.....-..-...+|+|+|+|.. +.++
T Consensus       188 ----Dti~svkfNpvETsILas~~-----------------sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~  245 (433)
T KOG0268|consen  188 ----DSISSVKFNPVETSILASCA-----------------SDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFV  245 (433)
T ss_pred             ----CceeEEecCCCcchheeeec-----------------cCCceEEEecccCCccceeeeeccccceecCccc-ccee
Confidence                1233444444433 333322                 3467888987655432111122468999999944 4555


Q ss_pred             EeCCc--EEEEEeC
Q 017520          236 CESWK--CRKYWLK  247 (370)
Q Consensus       236 ~~~~~--l~~~~~~  247 (370)
                      +....  ++-||+.
T Consensus       246 ~a~ED~nlY~~DmR  259 (433)
T KOG0268|consen  246 AANEDHNLYTYDMR  259 (433)
T ss_pred             eccccccceehhhh
Confidence            55444  8888864

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=93.27  E-value=1.7  Score=41.32  Aligned_cols=58  Identities=17%  Similarity=0.301  Sum_probs=36.4

Q ss_pred             ccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          221 ANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..+|+++++|+.+..+...+ +..||+....  ....+.  .|-...++.++..|.+-++...
T Consensus       296 V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--ql~t~~--tp~~a~~ls~SqkglLA~~~G~  354 (545)
T KOG1272|consen  296 VSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--QLHTYR--TPHPASNLSLSQKGLLALSYGD  354 (545)
T ss_pred             cceEEECCCCcEEeecccccceeEeeecccc--ccceee--cCCCccccccccccceeeecCC
Confidence            46899999999766666666 8888876532  122221  1223456777777766665433

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=93.12  E-value=4.8  Score=37.19  Aligned_cols=133  Identities=14%  Similarity=0.123  Sum_probs=76.4

Q ss_pred             ceEEEEeCCCCeEEEEe-cCCCCccce-EEccCCCEEEEEeCC----c-EEEEEeCCCCCCceeeeccCCCCCCCceeEC
Q 017520          199 GQLLKYDPSSNITTLVA-DGFYFANGV-ALSRDEDYVVVCESW----K-CRKYWLKGERKGKLETFAENLPGAPDNINLA  271 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~-~~~~~p~gi-~~~~dg~~l~v~~~~----~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d  271 (370)
                      +.+|.||.++-+.-.-. +.-.+|.|+ ++++....-|++-.+    + |..||...-+  ....+ +...+-.--++++
T Consensus       106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--~v~~I-~aH~~~lAalafs  182 (391)
T KOG2110|consen  106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--PVNTI-NAHKGPLAALAFS  182 (391)
T ss_pred             ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce--eeeEE-EecCCceeEEEEC
Confidence            35888887654332112 222466664 566654434444322    2 8999865421  22222 2233334568899


Q ss_pred             CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEE-C-CCCcEEEEEeCCCCCccccceeEEE
Q 017520          272 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV-A-EDGTIIRNLVDPTGQLMSFVTSGLQ  349 (370)
Q Consensus       272 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~-~-~~g~~~~~~~~~~g~~~~~~t~~~~  349 (370)
                      ++|++..+....                                  |.|+++ . ++|+.+..|.-  |...-.+.++.+
T Consensus       183 ~~G~llATASeK----------------------------------GTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~F  226 (391)
T KOG2110|consen  183 PDGTLLATASEK----------------------------------GTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSF  226 (391)
T ss_pred             CCCCEEEEeccC----------------------------------ceEEEEEEcCCccEeeeeeC--CceeeEEEEEEE
Confidence            999887775543                                  456655 3 78888888764  543334456666


Q ss_pred             EC-CEEEEEeCCCCeEEEEeCC
Q 017520          350 VD-NHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       350 ~~-g~L~~gs~~~~~i~~~~~~  370 (370)
                      .. ..+...+-+..-|.+++|+
T Consensus       227 s~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  227 SPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             CCCCCeEEEecCCCeEEEEEec
Confidence            54 5555556667788888874

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=93.00  E-value=0.49  Score=29.25  Aligned_cols=40  Identities=18%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             CcEEEEeCCCCCCCccceecccccCCCc-eEEEEeCCCCeEEE-EecCCCCccceEEcc
Q 017520          172 GSLYFTVSSSKYLPHEYCLDILEGKPHG-QLLKYDPSSNITTL-VADGFYFANGVALSR  228 (370)
Q Consensus       172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g-~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~  228 (370)
                      |+||.+|.+                 .. .+.+.+.++...+. +..++..|+||++++
T Consensus         1 ~~iYWtD~~-----------------~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWS-----------------QDPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETT-----------------TTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECC-----------------CCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            578999874                 23 78888887666444 457799999999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=92.83  E-value=7.1  Score=38.44  Aligned_cols=152  Identities=17%  Similarity=0.230  Sum_probs=73.3

Q ss_pred             CcEEEEec-----CCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeecCCccccc
Q 017520           90 GVIYTATR-----DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRF  162 (370)
Q Consensus        90 G~l~v~~~-----~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~~g~~~~~  162 (370)
                      ..||+.+.     .+..+.+| +|.++.+..........+...++|+|+++.. ..+..++..| +...... ++....+
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l-~~~~~~~  191 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDL-PGGYYDF  191 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE---TTEE-B
T ss_pred             CcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-CceEEEcCCCCEEEeeec-CCccccc
Confidence            34665553     45677888 8888766554332220256678999998875 6899999777 3322222 2211234


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------------------------
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------------------  216 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--------------------------  216 (370)
                      -+++...++|++.+......+....    .-.......|+.+| .+|++.....                          
T Consensus       192 HHD~~~l~nGn~L~l~~~~~~~~~~----~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~  266 (477)
T PF05935_consen  192 HHDIDELPNGNLLILASETKYVDED----KDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG  266 (477)
T ss_dssp             -S-EEE-TTS-EEEEEEETTEE-TS-----EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred             ccccEECCCCCEEEEEeecccccCC----CCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence            5688999999866654311110000    00011223566666 3444432210                          


Q ss_pred             --CCCCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520          217 --GFYFANGVALSRDEDYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       217 --~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~  248 (370)
                        +....|++.+++..+.++++.+..  |++++.++
T Consensus       267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t  302 (477)
T PF05935_consen  267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRT  302 (477)
T ss_dssp             TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TT
T ss_pred             CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCC
Confidence              012347889998666799988865  89988543

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=92.70  E-value=11  Score=37.74  Aligned_cols=164  Identities=17%  Similarity=0.134  Sum_probs=89.3

Q ss_pred             CCcEEEEecCCeEEEEe-CCe--EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEeecCCcccccc
Q 017520           89 NGVIYTATRDGWIKRLQ-DGT--WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFA  163 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~-~g~--~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~~~g~~~~~~  163 (370)
                      .|++.+|..|+.|.++. ++.  ...+........ ++....++.|.-++++. -.++.+.|  ...    .+|.. ..+
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC-~ls~~~~~~~iSgSWD~-TakvW~~~~l~~~----l~gH~-asV  143 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC-SLSIGEDGTLISGSWDS-TAKVWRIGELVYS----LQGHT-ASV  143 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchhhhhcccccee-eeecCCcCceEeccccc-ceEEecchhhhcc----cCCcc-hhe
Confidence            56799999898888888 332  222233444566 78877788865566553 34444333  222    23322 245


Q ss_pred             cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EE
Q 017520          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CR  242 (370)
Q Consensus       164 ~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~  242 (370)
                      ..++.=+++ .|+|-+.                 +..|..|.. ....+.+........|+++-+++. +.-+...+ |.
T Consensus       144 WAv~~l~e~-~~vTgsa-----------------DKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir  203 (745)
T KOG0301|consen  144 WAVASLPEN-TYVTGSA-----------------DKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIR  203 (745)
T ss_pred             eeeeecCCC-cEEeccC-----------------cceeeeccC-CchhhhhccchhheeeeEEecCCC-eEeecCCceEE
Confidence            566666776 7777542                 233444443 233444444455678899888876 45555555 88


Q ss_pred             EEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          243 KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +++++|...-+  .+  ....+.--+....++.+.+++...
T Consensus       204 ~w~~~ge~l~~--~~--ghtn~vYsis~~~~~~~Ivs~gED  240 (745)
T KOG0301|consen  204 LWDLDGEVLLE--MH--GHTNFVYSISMALSDGLIVSTGED  240 (745)
T ss_pred             EEeccCceeee--ee--ccceEEEEEEecCCCCeEEEecCC
Confidence            88876652211  11  111122223333445567776554

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=92.56  E-value=7.1  Score=34.57  Aligned_cols=177  Identities=11%  Similarity=0.073  Sum_probs=91.4

Q ss_pred             CCcceEEcC-CCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCCeEEEEe
Q 017520           80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDGVENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g~~~~~~  153 (370)
                      ..+.++.++ .-. +.+++.+..|.+|+  .++-..-....+.-. -+...|+|+ +.+++....|..++ ++- +....
T Consensus        66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~-~~~~~  143 (313)
T KOG1407|consen   66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTY-KIVNE  143 (313)
T ss_pred             chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEeccc-ceeeh
Confidence            456778885 233 44555777888888  554332222222223 467778776 44444445666666 322 11101


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe-CCCCeEEEEecCCCCccceEEccCCCE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD-PSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d-~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                         -....++|.+...-+++++|.+.                 +.|.|-.+. |.-+.+..+...-.+=..|.++|+|+.
T Consensus       144 ---~~~~~e~ne~~w~~~nd~Fflt~-----------------GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gry  203 (313)
T KOG1407|consen  144 ---EQFKFEVNEISWNNSNDLFFLTN-----------------GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRY  203 (313)
T ss_pred             ---hcccceeeeeeecCCCCEEEEec-----------------CCceEEEEeccccccccccccCCcceEEEEECCCCce
Confidence               01123677888887888888764                 234443332 111222211111111124678999996


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +-+....- +..+|++.-  --.+.+. .+.-..+.+.++-||.+.....
T Consensus       204 fA~GsADAlvSLWD~~EL--iC~R~is-RldwpVRTlSFS~dg~~lASaS  250 (313)
T KOG1407|consen  204 FATGSADALVSLWDVDEL--ICERCIS-RLDWPVRTLSFSHDGRMLASAS  250 (313)
T ss_pred             EeeccccceeeccChhHh--hhheeec-cccCceEEEEeccCcceeeccC
Confidence            65555544 666776532  1122222 2222246677888887665543

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.47  E-value=0.66  Score=28.22  Aligned_cols=40  Identities=30%  Similarity=0.282  Sum_probs=28.1

Q ss_pred             CC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEc
Q 017520          171 DG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS  227 (370)
Q Consensus       171 ~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~  227 (370)
                      +| ++|+++.                 ..+.|..+|+.+++......-...|.+++++
T Consensus         2 d~~~lyv~~~-----------------~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         2 DGTKLYVTNS-----------------GSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCEEEEEeC-----------------CCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            44 5999875                 3578999999877665444445678887764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=92.41  E-value=7.5  Score=34.53  Aligned_cols=109  Identities=12%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             CceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520          118 QTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       118 ~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      ||+.-+.+..+|.|+..........+.  .+|  +-.    +.|.. ..+..+++|.+-+..++-+              
T Consensus        11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt----y~GHt-GavW~~Did~~s~~liTGS--------------   71 (327)
T KOG0643|consen   11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT----YDGHT-GAVWCCDIDWDSKHLITGS--------------   71 (327)
T ss_pred             cccceEEecCCCcEEEEecCCCCceEEEecCCceeee----ecCCC-ceEEEEEecCCcceeeecc--------------
Confidence            455467888889877765443332222  245  222    23321 3566677777666666643              


Q ss_pred             ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc------EEEEEeCC
Q 017520          194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK------CRKYWLKG  248 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~------l~~~~~~~  248 (370)
                         .+..+..||.++|+......--....++.++.+|+.+.++....      |..|++..
T Consensus        72 ---AD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~  129 (327)
T KOG0643|consen   72 ---ADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRD  129 (327)
T ss_pred             ---ccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccC
Confidence               45667788988887765544434456788999998655554322      77888753

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=92.29  E-value=12  Score=38.07  Aligned_cols=179  Identities=13%  Similarity=0.101  Sum_probs=93.6

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEEE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~~  151 (370)
                      ..-+++++..+..+..+-.++.|..|+  +.+ +.++  .++..+ +-.|-|.++..+..... .+..++ ...  ++.+
T Consensus       374 ~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi--~~~y~l-~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti  450 (888)
T KOG0306|consen  374 SDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTI--TCGYIL-ASKFVPGDRYIVLGTKNGELQVFDLASASLVETI  450 (888)
T ss_pred             hheeEEEeecCceeeeecCCCcEEEEEccCcceeEEe--ccccEE-EEEecCCCceEEEeccCCceEEEEeehhhhhhhh
Confidence            346778887665444444677888888  333 3333  344555 66666544433333333 355555 333  2222


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC-------CCC-eEEEEe--cCCC--
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP-------SSN-ITTLVA--DGFY--  219 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~-------~t~-~~~~~~--~~~~--  219 (370)
                       ..-.    ..+..++..|||.=+++-+.                 +..|--||.       .+. ++-.+.  ..+.  
T Consensus       451 -~AHd----gaIWsi~~~pD~~g~vT~sa-----------------DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~  508 (888)
T KOG0306|consen  451 -RAHD----GAIWSISLSPDNKGFVTGSA-----------------DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELE  508 (888)
T ss_pred             -hccc----cceeeeeecCCCCceEEecC-----------------CcEEEEEeEEEEeccCcccceeeeeccceEEecc
Confidence             1111    35667888888876666442                 122222221       111 100000  0111  


Q ss_pred             -CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCch
Q 017520          220 -FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDA  285 (370)
Q Consensus       220 -~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~  285 (370)
                       ..-.+.++|||++|.++-.++ +.+|-+++-+. -...+...+|  ..-+-+++|+++.++....++
T Consensus       509 ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLP--V~smDIS~DSklivTgSADKn  573 (888)
T KOG0306|consen  509 DDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLP--VLSMDISPDSKLIVTGSADKN  573 (888)
T ss_pred             ccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccc--eeEEeccCCcCeEEeccCCCc
Confidence             233577899999999998888 88888776432 1122222233  123445677888888766554

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.27  E-value=6.7  Score=33.63  Aligned_cols=136  Identities=12%  Similarity=0.178  Sum_probs=69.9

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCC-CceeeeccCCC-CCCCceeECCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERK-GKLETFAENLP-GAPDNINLAPD  273 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~-~~~~~~~~~~~-g~p~~i~~d~~  273 (370)
                      ..+.-++||.++-+.  +-.--+.-.|..+..|++.|+.++-.. +..-|+++-.. ++..+-.+..| ...+.+.. -|
T Consensus       109 ~egvaf~~d~~t~~~--lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-Vd  185 (262)
T COG3823         109 KEGVAFKYDADTLEE--LGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VD  185 (262)
T ss_pred             ccceeEEEChHHhhh--hcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-ec
Confidence            346678888764322  111123346777888888777777555 65556544322 12221111111 01122221 24


Q ss_pred             CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeC--------CCCCccccc
Q 017520          274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVD--------PTGQLMSFV  344 (370)
Q Consensus       274 G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~--------~~g~~~~~~  344 (370)
                      |.+|.-.+..                                  ..|.+++|+ |+++.-+.-        .++...+..
T Consensus       186 G~lyANVw~t----------------------------------~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvl  231 (262)
T COG3823         186 GELYANVWQT----------------------------------TRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVL  231 (262)
T ss_pred             cEEEEeeeee----------------------------------cceEEEcCCCCcEEEEEEccCCchhcCccccccccc
Confidence            6666665554                                  237889975 777665422        122222223


Q ss_pred             eeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520          345 TSGLQV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       345 t~~~~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      ..++..  .+++|+.+..=+-+--+++
T Consensus       232 NGIA~~~~~~r~~iTGK~wp~lfEVk~  258 (262)
T COG3823         232 NGIAHDPQQDRFLITGKLWPLLFEVKL  258 (262)
T ss_pred             cceeecCcCCeEEEecCcCceeEEEEe
Confidence            344433  3789999887776655443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=92.07  E-value=8.9  Score=34.60  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=34.2

Q ss_pred             CceEEEEeCCCCeEEEEecCCC-CccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          198 HGQLLKYDPSSNITTLVADGFY-FANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~~~-~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ++.|-.+|+..+.......+.. ...++.++++|..+.-..... +.++|+..
T Consensus       195 dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp  247 (338)
T KOG0265|consen  195 DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP  247 (338)
T ss_pred             cCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecc
Confidence            4567778886566555554443 457999999999655555555 88888754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=91.97  E-value=12  Score=35.75  Aligned_cols=142  Identities=16%  Similarity=0.074  Sum_probs=73.6

Q ss_pred             cceEEcCCCcEEEEe-cCCeEEEEe--CCe-EEEEEecCCCceeceEEcC-CCcEEEEeCCCceEEEc--CCC-eEEEEe
Q 017520           82 EDASMDKNGVIYTAT-RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS--EDG-VENFLS  153 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~-~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~--~~g-~~~~~~  153 (370)
                      -++|+.+||...+.. .+..|..|+  +.+ ++.+....+... +++|-. ..+||.+..+.++-.++  .-. ++.+..
T Consensus       206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~-~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG  284 (479)
T KOG0299|consen  206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVS-SLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG  284 (479)
T ss_pred             EEEEEcCCCcEEEecCCCceEEEecCcccchhhccccccccee-eeeeecCccceeeeecCCceEEEehhHhHHHHHHhC
Confidence            357888888655433 556666777  443 455556667777 888852 23699998776665555  223 444322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l  233 (370)
                      ...     .+-+|..-..+++ ++...              ...+-+||++ ++ ....++..+-.++..+++=.+.. +
T Consensus       285 Hqd-----~v~~IdaL~reR~-vtVGg--------------rDrT~rlwKi-~e-esqlifrg~~~sidcv~~In~~H-f  341 (479)
T KOG0299|consen  285 HQD-----GVLGIDALSRERC-VTVGG--------------RDRTVRLWKI-PE-ESQLIFRGGEGSIDCVAFINDEH-F  341 (479)
T ss_pred             Ccc-----ceeeechhcccce-EEecc--------------ccceeEEEec-cc-cceeeeeCCCCCeeeEEEecccc-e
Confidence            211     2223333333442 22111              0123466666 33 22222333444677777766655 3


Q ss_pred             EEEeCCc-EEEEEeC
Q 017520          234 VVCESWK-CRKYWLK  247 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~  247 (370)
                      +....++ |..+.+.
T Consensus       342 vsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLL  356 (479)
T ss_pred             eeccCCceEEEeeec
Confidence            3333344 6666543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=91.90  E-value=12  Score=37.73  Aligned_cols=142  Identities=18%  Similarity=0.269  Sum_probs=73.8

Q ss_pred             CCcEEEEe-cC------CeEEEEe--CCeEEEEEecCC-C-ceeceEEcCCCcEEEEeCCC------ceEEEcCC-C-eE
Q 017520           89 NGVIYTAT-RD------GWIKRLQ--DGTWVNWKFIDS-Q-TLVGLTSTKEGHLIICDNAN------GLHKVSED-G-VE  149 (370)
Q Consensus        89 ~G~l~v~~-~~------g~I~~~~--~g~~~~~~~~~~-~-p~~gl~~d~~G~L~v~~~~~------gi~~~~~~-g-~~  149 (370)
                      +|.||+.- .+      ..+.+||  .+++........ + -. |++.- +|.||+.....      .+-++|+. . +.
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEEE-CCEEEEEeccccccccccEEEecCCCCccc
Confidence            56777643 33      2355666  445544332211 1 23 55554 78999975443      26666643 2 54


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--CCccceEEc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--YFANGVALS  227 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--~~p~gi~~~  227 (370)
                      ...+... .  ..-.+++ .-+|.||+.-.....           ...-..+.+|||.++.++....-.  +.-.|++.-
T Consensus       410 ~va~m~~-~--r~~~gv~-~~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~  474 (571)
T KOG4441|consen  410 PVAPMLT-R--RSGHGVA-VLGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL  474 (571)
T ss_pred             ccCCCCc-c--eeeeEEE-EECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecCCcccccccceEEEE
Confidence            4432211 1  1112222 247999998542100           002357999999999887664322  222344332


Q ss_pred             cCCCEEEEEeCCc-------EEEEEeCCC
Q 017520          228 RDEDYVVVCESWK-------CRKYWLKGE  249 (370)
Q Consensus       228 ~dg~~l~v~~~~~-------l~~~~~~~~  249 (370)
                        ++.||+.....       +.+||+...
T Consensus       475 --~~~iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  475 --NGKIYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             --CCEEEEECCccCCCccceEEEEcCCCC
Confidence              33477765421       788986554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=91.89  E-value=0.63  Score=42.47  Aligned_cols=91  Identities=12%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG  274 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  274 (370)
                      ++..+-.++..|.++.....+  .-.|||--.-...++|+.+..  |..|++..++   .-...+....+.+-|.+|.+ 
T Consensus       338 gDRTikvW~~st~efvRtl~g--HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~---cLRvLeGHEeLvRciRFd~k-  411 (499)
T KOG0281|consen  338 GDRTIKVWSTSTCEFVRTLNG--HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEGHEELVRCIRFDNK-  411 (499)
T ss_pred             CCceEEEEeccceeeehhhhc--ccccceehhccCeEEEecCCCceEEEEeccccH---HHHHHhchHHhhhheeecCc-
Confidence            456777888887766443332  234555433233477777655  8888876432   11112233334556777653 


Q ss_pred             CEEEEEecCchhHHHhhhc
Q 017520          275 TFWIAIIKLDARRMKILNS  293 (370)
Q Consensus       275 ~lwv~~~~~~~~~~~~~~~  293 (370)
                      ++--|...|...++++.+.
T Consensus       412 rIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  412 RIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             eeeeccccceEEEEecccc
Confidence            5767777777767766543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=91.60  E-value=3.8  Score=40.88  Aligned_cols=55  Identities=22%  Similarity=0.251  Sum_probs=38.6

Q ss_pred             ceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520          119 TLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVS  179 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~  179 (370)
                      .+ .+++.|||.=.+...+.+++.+| .+|  .+.+.    |.. ..++.++.+.||..+.+-+
T Consensus        15 i~-d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK----gHK-DtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   15 IN-DIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK----GHK-DTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             hh-eeEECCCCceEEEecCCEEEEEeCCCcccccccc----ccc-ceEEEEEEccCCceeccCC
Confidence            56 89999999644444467899999 456  44442    221 3578899999999887754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=91.58  E-value=1.5  Score=41.00  Aligned_cols=151  Identities=12%  Similarity=0.118  Sum_probs=79.1

Q ss_pred             cccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEEeCC
Q 017520          162 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       162 ~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      .++.+...|+|+ |..+..+                  |..-.++..+-.++.... .-.-..++.++++|++++-++.+
T Consensus        98 ~V~~v~WtPeGRRLltgs~S------------------GEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~g  159 (464)
T KOG0284|consen   98 PVNVVRWTPEGRRLLTGSQS------------------GEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKG  159 (464)
T ss_pred             ceeeEEEcCCCceeEeeccc------------------ccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCC
Confidence            567889999985 6555443                  334444432111111111 12234678999999976666666


Q ss_pred             cEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec-CchhHHHhhhcchhHHHHHHh---CCccccccccCC
Q 017520          240 KCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK-LDARRMKILNSSKLIKHVLAA---YPKLFSQFITLG  315 (370)
Q Consensus       240 ~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  315 (370)
                      ++.+||-  +.......+......-.+.++++++...++++.. ++..++|+....+.  +++..   .+..+.|   ++
T Consensus       160 G~iKyWq--pnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee--~vL~GHgwdVksvdW---HP  232 (464)
T KOG0284|consen  160 GMIKYWQ--PNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE--RVLRGHGWDVKSVDW---HP  232 (464)
T ss_pred             ceEEecc--cchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh--heeccCCCCcceecc---CC
Confidence            6777763  2223333332222223667888887777777754 44456665443221  11111   2222333   56


Q ss_pred             CceEEEEECCCCcEEEEEeCCCC
Q 017520          316 GGAHLIHVAEDGTIIRNLVDPTG  338 (370)
Q Consensus       316 ~~g~v~~~~~~g~~~~~~~~~~g  338 (370)
                      ..|.|.....|. .+..+...+|
T Consensus       233 ~kgLiasgskDn-lVKlWDprSg  254 (464)
T KOG0284|consen  233 TKGLIASGSKDN-LVKLWDPRSG  254 (464)
T ss_pred             ccceeEEccCCc-eeEeecCCCc
Confidence            667666666555 4444433444

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.40  E-value=13  Score=36.61  Aligned_cols=112  Identities=19%  Similarity=0.268  Sum_probs=67.0

Q ss_pred             cceEEc-CCCcEEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEE--
Q 017520           82 EDASMD-KNGVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENF--  151 (370)
Q Consensus        82 ~~i~~d-~~G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~--  151 (370)
                      .+++.+ +.-.||++.....|||++  .|.+-. +....+..+ .+-+.+-..|+.+....|.+.+.  ++.  +..+  
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccceEEecccCceEEEecchhhhhheeeec
Confidence            345555 355788877667799999  777543 333334445 66666666677766556666655  332  2222  


Q ss_pred             Eee---c-CCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          152 LSY---V-NGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       152 ~~~---~-~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      ...   . .+.....+..+.+..+| ++=|+.+                  +|.++.||..+.+--
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------------------~G~v~iyDLRa~~pl  263 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------------------TGSVLIYDLRASKPL  263 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeecc------------------CCcEEEEEcccCCce
Confidence            111   1 12233467788888777 5656543                  488999998765443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=91.10  E-value=11  Score=33.65  Aligned_cols=163  Identities=17%  Similarity=0.126  Sum_probs=78.7

Q ss_pred             CCeEEEEeCCeEEEEEecCC----CceeceEEcCCCcEEEE-e---CCCceEEEcCCC-eEEEEeecCCcccccccceEE
Q 017520           98 DGWIKRLQDGTWVNWKFIDS----QTLVGLTSTKEGHLIIC-D---NANGLHKVSEDG-VENFLSYVNGSKLRFANDVVE  168 (370)
Q Consensus        98 ~g~I~~~~~g~~~~~~~~~~----~p~~gl~~d~~G~L~v~-~---~~~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~  168 (370)
                      ||++.+.+++..+......+    .+. ..++.++|..+.+ .   ....++....++ ...+.   .+..+..   -.+
T Consensus         1 dG~l~~~~~~~~~pv~g~~~~~~~~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~~l~~---PS~   73 (253)
T PF10647_consen    1 DGQLVRVSGGGVTPVPGALGEGGYDVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGGSLTR---PSW   73 (253)
T ss_pred             CCcEEEecCCceeECCCCcCcCCcccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCCcccc---ccc
Confidence            35566655443333322211    345 7888888875443 2   223455555444 33332   2222333   388


Q ss_pred             cCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE---ecCCC-CccceEEccCCCEEEEEeC----Cc
Q 017520          169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV---ADGFY-FANGVALSRDEDYVVVCES----WK  240 (370)
Q Consensus       169 d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~---~~~~~-~p~gi~~~~dg~~l~v~~~----~~  240 (370)
                      |++|.+|+.+...               ...++++ +..++.....   ..... ....+.+++||..+.+.-.    ..
T Consensus        74 d~~g~~W~v~~~~---------------~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~  137 (253)
T PF10647_consen   74 DPDGWVWTVDDGS---------------GGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGR  137 (253)
T ss_pred             cCCCCEEEEEcCC---------------CceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCe
Confidence            9999999997531               1122332 2222322221   12222 4567899999987666652    22


Q ss_pred             EEEEEeCCCCCC------ceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          241 CRKYWLKGERKG------KLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       241 l~~~~~~~~~~~------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |+.--+.....+      ...........-...+....++.|.|.....
T Consensus       138 v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~  186 (253)
T PF10647_consen  138 VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA  186 (253)
T ss_pred             EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence            555443221111      1111111111223456666777777776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=90.92  E-value=20  Score=36.50  Aligned_cols=137  Identities=15%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             CCcEEEEecCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcC-------CC-eEEEEeecCC
Q 017520           89 NGVIYTATRDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSE-------DG-VENFLSYVNG  157 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~-------~g-~~~~~~~~~g  157 (370)
                      +.++.+|..+|.+..++  .. -.+++....+... .|...+|+.=++.......+++..       .| .+.+......
T Consensus       424 d~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIW-si~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~  502 (888)
T KOG0306|consen  424 DRYIVLGTKNGELQVFDLASASLVETIRAHDGAIW-SISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT  502 (888)
T ss_pred             CceEEEeccCCceEEEEeehhhhhhhhhcccccee-eeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc
Confidence            34555666777777776  22 2344445566777 888888887555443333333321       12 1111110011


Q ss_pred             cccc---cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEE
Q 017520          158 SKLR---FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYV  233 (370)
Q Consensus       158 ~~~~---~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l  233 (370)
                      ..+.   .+-.+.++|||++....-                 -+..+-.|-.++-++..-.-+..-| -.+.+++|.+ +
T Consensus       503 rtLel~ddvL~v~~Spdgk~LaVsL-----------------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-l  564 (888)
T KOG0306|consen  503 RTLELEDDVLCVSVSPDGKLLAVSL-----------------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-L  564 (888)
T ss_pred             eEEeccccEEEEEEcCCCcEEEEEe-----------------ccCeEEEEEecceeeeeeecccccceeEEeccCCcC-e
Confidence            1111   334567889998655422                 2345555555555555444454555 4688999999 5


Q ss_pred             EEEeCCc--EEEE
Q 017520          234 VVCESWK--CRKY  244 (370)
Q Consensus       234 ~v~~~~~--l~~~  244 (370)
                      .++.+..  |..|
T Consensus       565 ivTgSADKnVKiW  577 (888)
T KOG0306|consen  565 IVTGSADKNVKIW  577 (888)
T ss_pred             EEeccCCCceEEe
Confidence            6655544  4444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.87  E-value=14  Score=34.55  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=55.9

Q ss_pred             CCceEEEEeCCCCeEEEEec-CC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC
Q 017520          197 PHGQLLKYDPSSNITTLVAD-GF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP  272 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~-~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~  272 (370)
                      ..+.|..||+..+ .++++. .+  .....+.+.++|+++|++++.+ +..||..+.+..  ..+.....|-+..|...+
T Consensus       224 ~~hqvR~YDt~~q-RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~--g~~~kg~tGsirsih~hp  300 (412)
T KOG3881|consen  224 RYHQVRLYDTRHQ-RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL--GCGLKGITGSIRSIHCHP  300 (412)
T ss_pred             cceeEEEecCccc-CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee--ccccCCccCCcceEEEcC
Confidence            4578889999744 333332 11  1224567889999999999988 999998765432  222335566788898888


Q ss_pred             CCCEEEEEec
Q 017520          273 DGTFWIAIIK  282 (370)
Q Consensus       273 ~G~lwv~~~~  282 (370)
                      .+.+...+.-
T Consensus       301 ~~~~las~GL  310 (412)
T KOG3881|consen  301 THPVLASCGL  310 (412)
T ss_pred             CCceEEeecc
Confidence            7776666543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=90.83  E-value=12  Score=34.06  Aligned_cols=70  Identities=13%  Similarity=0.015  Sum_probs=47.5

Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc-
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK-  240 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~-  240 (370)
                      .+.+.+.+-|.+...-                 -.+|+|..||..|-.+...... ..-...+++++||+.|+-+.+.. 
T Consensus        26 a~~~~Fs~~G~~lAvG-----------------c~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s   88 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVG-----------------CANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS   88 (405)
T ss_pred             cceEEeccCcceeeee-----------------ccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence            4566777777643321                 2568999999887655433333 23346899999999777777776 


Q ss_pred             EEEEEeCCC
Q 017520          241 CRKYWLKGE  249 (370)
Q Consensus       241 l~~~~~~~~  249 (370)
                      |..||+..+
T Consensus        89 i~lwDl~~g   97 (405)
T KOG1273|consen   89 IKLWDLLKG   97 (405)
T ss_pred             eEEEeccCC
Confidence            888887544

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=90.69  E-value=4.7  Score=37.29  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=52.7

Q ss_pred             cCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc--CCC--eEEEEeecCCcccccccceEE
Q 017520           97 RDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS--EDG--VENFLSYVNGSKLRFANDVVE  168 (370)
Q Consensus        97 ~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~--~~g--~~~~~~~~~g~~~~~~~~l~~  168 (370)
                      ..|.|+.||  +-+ +..+....+... +|+|+++|.+..+...+| |.|+-  ++|  +.++.   .|..--.+..|++
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR---RG~~~~~IySL~F  226 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR---RGTYPVSIYSLSF  226 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee---CCceeeEEEEEEE
Confidence            468888888  322 344444555556 899999999998776655 55544  777  44443   2333346778999


Q ss_pred             cCCCcEEEEeC
Q 017520          169 ASDGSLYFTVS  179 (370)
Q Consensus       169 d~~G~l~v~d~  179 (370)
                      ++++.+..+.+
T Consensus       227 s~ds~~L~~sS  237 (391)
T KOG2110|consen  227 SPDSQFLAASS  237 (391)
T ss_pred             CCCCCeEEEec
Confidence            99998665554

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=90.67  E-value=19  Score=35.78  Aligned_cols=68  Identities=15%  Similarity=0.169  Sum_probs=38.0

Q ss_pred             EEecCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecC
Q 017520          213 LVADGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKL  283 (370)
Q Consensus       213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~  283 (370)
                      .........+-+.++.+|+.+-+....+    |+.++++..+..  ..|- ...|.+-...+-+ .-.++|++...
T Consensus       516 ~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ--~PF~-kskG~vq~v~FHPs~p~lfVaTq~~  588 (733)
T KOG0650|consen  516 IVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ--SPFR-KSKGLVQRVKFHPSKPYLFVATQRS  588 (733)
T ss_pred             EEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc--Cchh-hcCCceeEEEecCCCceEEEEeccc
Confidence            4444555667889999999665544322    888887643221  2221 2234444455544 33677777543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=90.59  E-value=16  Score=34.85  Aligned_cols=28  Identities=11%  Similarity=-0.064  Sum_probs=20.7

Q ss_pred             CCccceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          219 YFANGVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      ...+...|+|++..|+.+.... |..||.
T Consensus       370 rsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             ceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            3457889999887666665555 999985

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.56  E-value=17  Score=34.89  Aligned_cols=149  Identities=14%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             ceEEcCCCcEEE-E-eCCC----ceEEEc-CCCeEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceeccc
Q 017520          122 GLTSTKEGHLII-C-DNAN----GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       122 gl~~d~~G~L~v-~-~~~~----gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~  193 (370)
                      ++.+++||+.++ + +.++    .++.++ ++| +.+.......   ....+++.+||+ +|.+........ .      
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~~---~~~~~~W~~d~~~~~y~~~~~~~~~-~------  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIENP---KFSSVSWSDDGKGFFYTRFDEDQRT-S------  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEEE---ESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCccccc---ccceEEEeCCCCEEEEEEeCccccc-c------
Confidence            467788997443 2 3322    266667 677 1111111111   112388889886 444432100000 0      


Q ss_pred             ccCCCceEEEEeCCCCeEE--EEecCCCCc---cceEEccCCCEEEEEeCCc-----EEEEEeCCC--CCCceeeeccCC
Q 017520          194 EGKPHGQLLKYDPSSNITT--LVADGFYFA---NGVALSRDEDYVVVCESWK-----CRKYWLKGE--RKGKLETFAENL  261 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~--~~~~~~~~p---~gi~~~~dg~~l~v~~~~~-----l~~~~~~~~--~~~~~~~~~~~~  261 (370)
                      .......|+++...+...+  .+......+   .++..++|++++++....+     ++.++....  .......+....
T Consensus       197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~  276 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE  276 (414)
T ss_dssp             CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred             cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence            0001346888887655432  444443333   3778899999888765433     777777653  122334443222


Q ss_pred             CCCCCceeECCCCCEEEEEec
Q 017520          262 PGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       262 ~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      .+.-. ......+.+|+-++.
T Consensus       277 ~~~~~-~v~~~~~~~yi~Tn~  296 (414)
T PF02897_consen  277 DGVEY-YVDHHGDRLYILTND  296 (414)
T ss_dssp             SS-EE-EEEEETTEEEEEE-T
T ss_pred             CceEE-EEEccCCEEEEeeCC
Confidence            22111 111224568877764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=90.56  E-value=2.5  Score=41.29  Aligned_cols=143  Identities=9%  Similarity=0.075  Sum_probs=76.7

Q ss_pred             eEEcC-CCcEEEEecCCeEEEEe--CC-eEEEEE---e---cC-----CCceeceEEcCCC-cEEEEeCCCceEEEc-CC
Q 017520           84 ASMDK-NGVIYTATRDGWIKRLQ--DG-TWVNWK---F---ID-----SQTLVGLTSTKEG-HLIICDNANGLHKVS-ED  146 (370)
Q Consensus        84 i~~d~-~G~l~v~~~~g~I~~~~--~g-~~~~~~---~---~~-----~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~  146 (370)
                      +-+.+ .|-|-+|+.+|.|-.||  +. ....+.   .   ..     ..+. ++.|+.+| ++=|+...+.++.+| +.
T Consensus       181 v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT-al~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  181 VSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT-ALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             eeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcce-EEEecCCceeEEeeccCCcEEEEEccc
Confidence            33433 45555666777777777  21 111111   1   11     1256 78998777 577777666688888 44


Q ss_pred             CeEEEE-eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceE
Q 017520          147 GVENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (370)
Q Consensus       147 g~~~~~-~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~  225 (370)
                      ....+. ......+......+.-|....++-.|.                   .-+-.||..+++.-.........|-+|
T Consensus       260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk-------------------~~~kiWd~~~Gk~~asiEpt~~lND~C  320 (703)
T KOG2321|consen  260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDK-------------------RILKIWDECTGKPMASIEPTSDLNDFC  320 (703)
T ss_pred             CCceeecccCCccceeeecccccCCCceEEecch-------------------HHhhhcccccCCceeeccccCCcCcee
Confidence            311111 111122222221111122223443332                   223446777777666556666678899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEe
Q 017520          226 LSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      +-+++..+++++.+. +..|-+
T Consensus       321 ~~p~sGm~f~Ane~~~m~~yyi  342 (703)
T KOG2321|consen  321 FVPGSGMFFTANESSKMHTYYI  342 (703)
T ss_pred             eecCCceEEEecCCCcceeEEc
Confidence            999988777777766 666654

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.93  E-value=3.8  Score=38.09  Aligned_cols=85  Identities=12%  Similarity=0.131  Sum_probs=50.6

Q ss_pred             EEEEecCCeEEEEe--CCe--EEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCCeEEEEeecCCcccccccc
Q 017520           92 IYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDGVENFLSYVNGSKLRFAND  165 (370)
Q Consensus        92 l~v~~~~g~I~~~~--~g~--~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g~~~~~~~~~g~~~~~~~~  165 (370)
                      +-..+..+.|..||  .++  +..+... ..|.+.+..+++|+ +|+++....+..|| ..+ +.+.-...|. -+++.+
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~-E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~-kl~g~~~kg~-tGsirs  295 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFL-ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG-KLLGCGLKGI-TGSIRS  295 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccc-cCcceeeeecCCCcEEEEecccchhheecccCc-eeeccccCCc-cCCcce
Confidence            33445667777777  232  2222222 23333788889996 78888777899999 555 1111111221 147888


Q ss_pred             eEEcCCCcEEEEeC
Q 017520          166 VVEASDGSLYFTVS  179 (370)
Q Consensus       166 l~~d~~G~l~v~d~  179 (370)
                      |..++.+.+..+.+
T Consensus       296 ih~hp~~~~las~G  309 (412)
T KOG3881|consen  296 IHCHPTHPVLASCG  309 (412)
T ss_pred             EEEcCCCceEEeec
Confidence            99998888766654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.91  E-value=18  Score=36.20  Aligned_cols=179  Identities=14%  Similarity=0.093  Sum_probs=97.4

Q ss_pred             CCcceEE-cCCCcEEEEe-cCCeEEEEe--CCeE---EEEE---------ecCCCceeceEEcCCCcEEEEeCCCceEEE
Q 017520           80 HPEDASM-DKNGVIYTAT-RDGWIKRLQ--DGTW---VNWK---------FIDSQTLVGLTSTKEGHLIICDNANGLHKV  143 (370)
Q Consensus        80 ~P~~i~~-d~~G~l~v~~-~~g~I~~~~--~g~~---~~~~---------~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~  143 (370)
                      .-.++++ .++..+.++. -+++|..|+  .|..   ..+.         .+....+ +++..+.|.++|+..-.+++++
T Consensus       119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siY-SLA~N~t~t~ivsGgtek~lr~  197 (735)
T KOG0308|consen  119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIY-SLAMNQTGTIIVSGGTEKDLRL  197 (735)
T ss_pred             hheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcccee-eeecCCcceEEEecCcccceEE
Confidence            3556666 4555555544 678899888  4421   1110         0112346 7888888888887655666665


Q ss_pred             c--CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCC
Q 017520          144 S--EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGF  218 (370)
Q Consensus       144 ~--~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~  218 (370)
                      .  +++  +..+.    |.. ..+..|.+++||+-.++.++                 +|.|..+|...++...- .-.-
T Consensus       198 wDprt~~kimkLr----GHT-dNVr~ll~~dDGt~~ls~sS-----------------DgtIrlWdLgqQrCl~T~~vH~  255 (735)
T KOG0308|consen  198 WDPRTCKKIMKLR----GHT-DNVRVLLVNDDGTRLLSASS-----------------DGTIRLWDLGQQRCLATYIVHK  255 (735)
T ss_pred             eccccccceeeee----ccc-cceEEEEEcCCCCeEeecCC-----------------CceEEeeeccccceeeeEEecc
Confidence            5  455  33332    211 35778899999987777653                 57777788754433211 1000


Q ss_pred             CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCc
Q 017520          219 YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLD  284 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~  284 (370)
                      ...=.+..+++=..+|.++..+ |++-++..+.. ....+.+..|  ...+.... +..+|+++..+.
T Consensus       256 e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~-~tlick~daP--v~~l~~~~~~~~~WvtTtds~  320 (735)
T KOG0308|consen  256 EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK-STLICKEDAP--VLKLHLHEHDNSVWVTTTDSS  320 (735)
T ss_pred             CceEEEeeCCCcceEEecCCCCcEEecccCCchh-heEeecCCCc--hhhhhhccccCCceeeecccc
Confidence            0111233345555688888887 88888766421 1222222222  12233332 224699987764

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=89.72  E-value=17  Score=33.85  Aligned_cols=151  Identities=13%  Similarity=0.190  Sum_probs=96.4

Q ss_pred             CCcCCCcceEEcCCCcEEEE-ecCCeEEEEe-CC----eEEEEE--------------------ecCC--CceeceEEcC
Q 017520           76 GSVNHPEDASMDKNGVIYTA-TRDGWIKRLQ-DG----TWVNWK--------------------FIDS--QTLVGLTSTK  127 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~-~~~g~I~~~~-~g----~~~~~~--------------------~~~~--~p~~gl~~d~  127 (370)
                      |.-...++|.++++|..++. +.|..|-.|+ ..    +.+...                    ...|  .|...+.+.+
T Consensus       191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d  270 (423)
T KOG0313|consen  191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD  270 (423)
T ss_pred             ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence            54456788999999977765 4777777776 11    111110                    0001  1222677777


Q ss_pred             CCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE
Q 017520          128 EGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (370)
Q Consensus       128 ~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~  204 (370)
                      .+.+|-+.+++-|...| .+|  ...+...      ...+.+...+.-++.++.++                 +.-+..|
T Consensus       271 ~~v~yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gss-----------------dr~irl~  327 (423)
T KOG0313|consen  271 ATVIYSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGSS-----------------DRHIRLW  327 (423)
T ss_pred             CCceEeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecCC-----------------CCceeec
Confidence            78899999888899999 666  4433221      35677788887788877553                 2346678


Q ss_pred             eCCCCeEEEEe----cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520          205 DPSSNITTLVA----DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       205 d~~t~~~~~~~----~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      ||.++.-.++.    ..-....++.++|...+.+++....  +..+|+...
T Consensus       328 DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~  378 (423)
T KOG0313|consen  328 DPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST  378 (423)
T ss_pred             CCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence            88766443332    2233567888999888888887755  777776543

>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]

Probab=89.64  E-value=13  Score=32.97  Aligned_cols=81  Identities=25%  Similarity=0.365  Sum_probs=46.2

Q ss_pred             eEEEEeCCCCeEEEEe-------cCCCCccceEEccC---CC-EEEEEeCCc-EEEEEeCCC---CCC--ceeeeccCCC
Q 017520          200 QLLKYDPSSNITTLVA-------DGFYFANGVALSRD---ED-YVVVCESWK-CRKYWLKGE---RKG--KLETFAENLP  262 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~-------~~~~~p~gi~~~~d---g~-~l~v~~~~~-l~~~~~~~~---~~~--~~~~~~~~~~  262 (370)
                      .+|.+|++.+..+.+.       .++..+.|+++..+   |. .++|+...+ +..|.+-..   +.+  ..+.|  ..+
T Consensus       127 ~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~f--k~~  204 (364)
T COG4247         127 VFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQF--KIP  204 (364)
T ss_pred             EEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEee--ecC
Confidence            4677777766555443       34667889888654   33 344555555 888876432   111  12222  233


Q ss_pred             CCCCceeE-CCCCCEEEEEec
Q 017520          263 GAPDNINL-APDGTFWIAIIK  282 (370)
Q Consensus       263 g~p~~i~~-d~~G~lwv~~~~  282 (370)
                      ....|+.. |+-|.+||+...
T Consensus       205 tQTEG~VaDdEtG~LYIaeEd  225 (364)
T COG4247         205 TQTEGMVADDETGFLYIAEED  225 (364)
T ss_pred             CcccceeeccccceEEEeecc
Confidence            33456554 567899999654

>PHA02713 hypothetical protein; Provisional

Probab=89.10  E-value=24  Score=35.54  Aligned_cols=152  Identities=12%  Similarity=0.116  Sum_probs=72.3

Q ss_pred             CCcEEEEec-C------CeEEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCCC------ceEEEcC-CC-eE
Q 017520           89 NGVIYTATR-D------GWIKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNAN------GLHKVSE-DG-VE  149 (370)
Q Consensus        89 ~G~l~v~~~-~------g~I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~~------gi~~~~~-~g-~~  149 (370)
                      +|.||+... +      ..+++++  ++++....+.. .+ -. +++. -+|.||+.....      .+.++++ +. +.
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-IDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-ECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            678887532 1      2477777  55555443211 11 12 3333 368999965432      2566773 44 55


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCC---Cccceecc--c-ccCCCceEEEEeCCCCeEEEEecC--CCCc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYL---PHEYCLDI--L-EGKPHGQLLKYDPSSNITTLVADG--FYFA  221 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~---~~~~~~~~--~-~~~~~g~l~~~d~~t~~~~~~~~~--~~~p  221 (370)
                      .+.+. +... ... .++ .-+|.||+.-......   .......+  . .......+.+|||.+++++.+..-  ....
T Consensus       381 ~~~~m-p~~r-~~~-~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~  456 (557)
T PHA02713        381 MLPDM-PIAL-SSY-GMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR  456 (557)
T ss_pred             ECCCC-Cccc-ccc-cEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence            43321 1111 111 222 2468999974321100   00000000  0 001135699999999988765431  1112


Q ss_pred             cceEEccCCCEEEEEeCC-------c-EEEEEeCC
Q 017520          222 NGVALSRDEDYVVVCESW-------K-CRKYWLKG  248 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~-------~-l~~~~~~~  248 (370)
                      .+++. -+++ ||+....       . +.+||+..
T Consensus       457 ~~~~~-~~~~-IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        457 PGVVS-HKDD-IYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             CcEEE-ECCE-EEEEeCCCCCCccceeEEEecCCC
Confidence            23332 2344 7877521       2 67898764

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=89.01  E-value=28  Score=35.24  Aligned_cols=91  Identities=14%  Similarity=0.086  Sum_probs=48.2

Q ss_pred             CCcEEEEecCCeEEEEe-C-CeEEEEEec--CCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--e-EEEEeecCCcc
Q 017520           89 NGVIYTATRDGWIKRLQ-D-GTWVNWKFI--DSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--V-ENFLSYVNGSK  159 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~-~-g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~-~~~~~~~~g~~  159 (370)
                      +-.+-+|+..|.||-++ . |....+...  .+... ...++++..+.++...+|.+.+-  ..+  - ..+.....-..
T Consensus        45 ~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~-~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~  123 (726)
T KOG3621|consen   45 EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITC-VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSH  123 (726)
T ss_pred             CceEEEecccceEEEEecCchhhhcccccCccceEE-EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccC
Confidence            34667777777788777 3 333333221  12222 45556666666555555555443  112  1 11111111111


Q ss_pred             cccccceEEcCCC-cEEEEeCC
Q 017520          160 LRFANDVVEASDG-SLYFTVSS  180 (370)
Q Consensus       160 ~~~~~~l~~d~~G-~l~v~d~~  180 (370)
                      -..+..+.++++| ++|.+|+.
T Consensus       124 ~~rVTal~Ws~~~~k~ysGD~~  145 (726)
T KOG3621|consen  124 KCRVTALEWSKNGMKLYSGDSQ  145 (726)
T ss_pred             CceEEEEEecccccEEeecCCC
Confidence            2467789999999 79999874

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=88.89  E-value=18  Score=32.85  Aligned_cols=139  Identities=14%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             CCCcEEEEecCCeEEEEe--C--C-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCccc
Q 017520           88 KNGVIYTATRDGWIKRLQ--D--G-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKL  160 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~--g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~  160 (370)
                      +..++|++++..++..+|  +  . +.+-+....+-.. |+.+. -..+||++...|++.++ .+- ..+++..... +.
T Consensus        95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyay-gv~vs-Gn~aYVadlddgfLivdvsdpssP~lagrya~-~~  171 (370)
T COG5276          95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAY-GVYVS-GNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL-PG  171 (370)
T ss_pred             cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEE-EEEec-CCEEEEeeccCcEEEEECCCCCCceeeeeecc-CC
Confidence            356899999777799988  2  1 2333333445556 66664 23599999888999999 443 3444333221 11


Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC---CCccceEEccCCCEEEEEe
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF---YFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---~~p~gi~~~~dg~~l~v~~  237 (370)
                      ...++++++ ..+.|++..                  +++|..+|.....--++....   ....++.+++  +..|+..
T Consensus       172 ~d~~~v~IS-Gn~AYvA~~------------------d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vv  230 (370)
T COG5276         172 GDTHDVAIS-GNYAYVAWR------------------DGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVV  230 (370)
T ss_pred             CCceeEEEe-cCeEEEEEe------------------CCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEE
Confidence            223566664 236788753                  356777765422211221111   1233444443  3467766


Q ss_pred             CCc-EEEEEeCCCC
Q 017520          238 SWK-CRKYWLKGER  250 (370)
Q Consensus       238 ~~~-l~~~~~~~~~  250 (370)
                      .+. +...|.++++
T Consensus       231 y~egvlivd~s~~s  244 (370)
T COG5276         231 YDEGVLIVDVSGPS  244 (370)
T ss_pred             cccceEEEecCCCC
Confidence            655 8888887764

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=88.85  E-value=14  Score=37.85  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             cceEEcCCCcEE-EEecCCeEEEEe-CC---e-----EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeE
Q 017520           82 EDASMDKNGVIY-TATRDGWIKRLQ-DG---T-----WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVE  149 (370)
Q Consensus        82 ~~i~~d~~G~l~-v~~~~g~I~~~~-~g---~-----~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~  149 (370)
                      .+.++.+.++.. .++.+|+|..|. -|   .     .-.|  ...... ++++..+|.........+++...  .++.+
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~-~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k  285 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVN-SLSFSSDGAYLLSGGREGVLVLWQLETGKK  285 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--cccccc-eeEEecCCceEeecccceEEEEEeecCCCc
Confidence            345666766544 455889999887 22   1     1122  223456 89999999644444445776666  34434


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe------------cC
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------------DG  217 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------~~  217 (370)
                      ++.+...    .-+-++++.+|+++|-....                 ++.+..+...+-......            ..
T Consensus       286 qfLPRLg----s~I~~i~vS~ds~~~sl~~~-----------------DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~  344 (792)
T KOG1963|consen  286 QFLPRLG----SPILHIVVSPDSDLYSLVLE-----------------DNQIHLIKASDLEIKSTISGIKPPTPSTKTRP  344 (792)
T ss_pred             ccccccC----CeeEEEEEcCCCCeEEEEec-----------------CceEEEEeccchhhhhhccCccCCCccccccc
Confidence            4433322    23567899999988776431                 233333332111111100            11


Q ss_pred             CCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          218 FYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ...+.+++++|.-+.+......+ |.-||+-..
T Consensus       345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             cccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            34567889999544444444444 888887543

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=88.62  E-value=9.7  Score=34.79  Aligned_cols=148  Identities=10%  Similarity=0.084  Sum_probs=82.8

Q ss_pred             cCCCcceEEcCCC-cEEEEecCCeEEEEe---CCeEE-EE---Ee----cCCCceeceEEcCCC--cEEEEeCCC--ceE
Q 017520           78 VNHPEDASMDKNG-VIYTATRDGWIKRLQ---DGTWV-NW---KF----IDSQTLVGLTSTKEG--HLIICDNAN--GLH  141 (370)
Q Consensus        78 ~~~P~~i~~d~~G-~l~v~~~~g~I~~~~---~g~~~-~~---~~----~~~~p~~gl~~d~~G--~L~v~~~~~--gi~  141 (370)
                      +....++++.+|| .||.|.. .-|..|+   .|... .+   ..    ..+-.. .+++.|..  .+-++.+.+  ||+
T Consensus       158 ~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~~a~gsY~q~~giy  235 (406)
T KOG2919|consen  158 YTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKTLAVGSYGQRVGIY  235 (406)
T ss_pred             hhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcceeeecccceeeeE
Confidence            4467889999999 5666664 4588888   45321 11   11    122234 67888755  344555544  455


Q ss_pred             EEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe---cC
Q 017520          142 KVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA---DG  217 (370)
Q Consensus       142 ~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~---~~  217 (370)
                      .-+..+ +..+..     ..+.+..|.+-++|+-+|+-+                +....|.++|.. .....+.   ..
T Consensus       236 ~~~~~~pl~llgg-----h~gGvThL~~~edGn~lfsGa----------------Rk~dkIl~WDiR-~~~~pv~~L~rh  293 (406)
T KOG2919|consen  236 NDDGRRPLQLLGG-----HGGGVTHLQWCEDGNKLFSGA----------------RKDDKILCWDIR-YSRDPVYALERH  293 (406)
T ss_pred             ecCCCCceeeecc-----cCCCeeeEEeccCcCeecccc----------------cCCCeEEEEeeh-hccchhhhhhhh
Confidence            444333 443321     124677889999996444432                145678888864 2222111   11


Q ss_pred             CC-Cccce--EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          218 FY-FANGV--ALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       218 ~~-~p~gi--~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      .. ...-|  .+++++++|.-.++.+ |.+||+++.
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~  329 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL  329 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence            11 12234  3467888655555777 999998763

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=88.54  E-value=1.3  Score=26.88  Aligned_cols=31  Identities=26%  Similarity=0.427  Sum_probs=22.2

Q ss_pred             CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC
Q 017520           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG  107 (370)
Q Consensus        77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g  107 (370)
                      .+..|.++++|. .+.||.++ ..+.|.+.+ +|
T Consensus         7 ~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g   40 (43)
T smart00135        7 GLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDG   40 (43)
T ss_pred             CCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCC
Confidence            467888888886 46788887 456677766 54

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=88.48  E-value=20  Score=36.42  Aligned_cols=70  Identities=17%  Similarity=0.003  Sum_probs=41.2

Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc----cceEEccCCCEEEEEe
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA----NGVALSRDEDYVVVCE  237 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p----~gi~~~~dg~~l~v~~  237 (370)
                      -.++|++||.-.+.++.-                 .+..|..||.+.++....+.+-..-    --+.+||.|.++..+-
T Consensus       598 TlYDm~Vdp~~k~v~t~c-----------------QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc  660 (1080)
T KOG1408|consen  598 TLYDMAVDPTSKLVVTVC-----------------QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC  660 (1080)
T ss_pred             eEEEeeeCCCcceEEEEe-----------------cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee
Confidence            456778877655444421                 2345777787777666555544333    3467788885433334


Q ss_pred             CCc-EEEEEeCC
Q 017520          238 SWK-CRKYWLKG  248 (370)
Q Consensus       238 ~~~-l~~~~~~~  248 (370)
                      ++. |..||.-.
T Consensus       661 sdktl~~~Df~s  672 (1080)
T KOG1408|consen  661 SDKTLCFVDFVS  672 (1080)
T ss_pred             cCCceEEEEecc
Confidence            444 88888643

>PHA02713 hypothetical protein; Provisional

Probab=88.37  E-value=30  Score=34.83  Aligned_cols=98  Identities=10%  Similarity=0.093  Sum_probs=50.8

Q ss_pred             eEEEEe--CCeEEEEEecCCC--ceeceEEcCCCcEEEEeCC-------CceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520          100 WIKRLQ--DGTWVNWKFIDSQ--TLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (370)
Q Consensus       100 ~I~~~~--~g~~~~~~~~~~~--p~~gl~~d~~G~L~v~~~~-------~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l  166 (370)
                      .+.+++  .+++.........  .. +.++- ++.||+....       ..+.+++ .+. +..+.+. +..+ ... . 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~~-~~a~l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m-~~~R-~~~-~-  346 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIINY-ASAIV-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM-IKNR-CRF-S-  346 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccce-EEEEE-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC-cchh-hce-e-
Confidence            466777  5566554332211  13 34443 6789997542       1266777 344 4433221 1111 111 2 


Q ss_pred             EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                      +..-+|.||+.-...            .......+.+||+.++++..+.
T Consensus       347 ~~~~~g~IYviGG~~------------~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        347 LAVIDDTIYAIGGQN------------GTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             EEEECCEEEEECCcC------------CCCCCceEEEEECCCCeEEECC
Confidence            233468999874420            0012346899999988887654

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=88.29  E-value=22  Score=33.08  Aligned_cols=146  Identities=17%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC--eEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g--~~~~  151 (370)
                      +-.++++-+.|+ |.-...+..|..++  +|. +.++.....-.. -+++..||.|+.+.....-+++.  .++  ...+
T Consensus       195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr-~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~l  273 (406)
T KOG0295|consen  195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVR-MVRVNQDGTIIASCSNDQTLRVWVVATKQCKAEL  273 (406)
T ss_pred             ceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEE-EEEecCCeeEEEecCCCceEEEEEeccchhhhhh
Confidence            344566666663 22233677788777  443 444443333344 57777888888865544333333  222  1111


Q ss_pred             EeecCCcccccccceEEcCC--------------C-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-
Q 017520          152 LSYVNGSKLRFANDVVEASD--------------G-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-  215 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~--------------G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-  215 (370)
                      ... +    .-+.-+++.|+              | .+.++                 ...++.+-.+|..++.+-.-. 
T Consensus       274 R~h-E----h~vEci~wap~~~~~~i~~at~~~~~~~~l~s-----------------~SrDktIk~wdv~tg~cL~tL~  331 (406)
T KOG0295|consen  274 REH-E----HPVECIAWAPESSYPSISEATGSTNGGQVLGS-----------------GSRDKTIKIWDVSTGMCLFTLV  331 (406)
T ss_pred             hcc-c----cceEEEEecccccCcchhhccCCCCCccEEEe-----------------ecccceEEEEeccCCeEEEEEe
Confidence            000 0    00111122111              1 22222                 124567777888888664333 


Q ss_pred             cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          216 DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       216 ~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      .......+++++|.|++|+-+..++ |.+||++.
T Consensus       332 ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~  365 (406)
T KOG0295|consen  332 GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKN  365 (406)
T ss_pred             cccceeeeeEEcCCCeEEEEEecCCcEEEEEecc
Confidence            3445678999999999877777666 99999764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.90  E-value=13  Score=37.19  Aligned_cols=143  Identities=11%  Similarity=0.134  Sum_probs=74.6

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC----eEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG----VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g----~~~~  151 (370)
                      .-.++|..+.|.+.++. -++-|..|+  .+ ++..+...-.... .+.+++||+=.+.....|..++..-|    +..+
T Consensus       173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~  251 (735)
T KOG0308|consen  173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY  251 (735)
T ss_pred             ceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCeEeecCCCceEEeeeccccceeeeE
Confidence            34556666778787765 344455556  33 4555554445566 78888999766655556666665322    3332


Q ss_pred             EeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEecCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~~~~~p~gi~~~~d  229 (370)
                      .-..     ..+..+..+++ -.+|.++.                  .+.|++-|..+. +.+.+...-.-..-+.++.+
T Consensus       252 ~vH~-----e~VWaL~~~~sf~~vYsG~r------------------d~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~  308 (735)
T KOG0308|consen  252 IVHK-----EGVWALQSSPSFTHVYSGGR------------------DGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEH  308 (735)
T ss_pred             Eecc-----CceEEEeeCCCcceEEecCC------------------CCcEEecccCCchhheEeecCCCchhhhhhccc
Confidence            2111     12445555443 24555543                  356666665432 11222221111223444444


Q ss_pred             CCEEEEEeCCc-EEEEEe
Q 017520          230 EDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~  246 (370)
                      .+.+|++.+.. |.||..
T Consensus       309 ~~~~WvtTtds~I~rW~~  326 (735)
T KOG0308|consen  309 DNSVWVTTTDSSIKRWKL  326 (735)
T ss_pred             cCCceeeeccccceecCC
Confidence            44467777776 777643

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=87.43  E-value=12  Score=36.00  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=57.5

Q ss_pred             eEEEEe--CCeEEEEEecC---CCceeceEEc--CCC-cEEEEeCC-CceEEEc--CCC---eEEEEeec----CCc---
Q 017520          100 WIKRLQ--DGTWVNWKFID---SQTLVGLTST--KEG-HLIICDNA-NGLHKVS--EDG---VENFLSYV----NGS---  158 (370)
Q Consensus       100 ~I~~~~--~g~~~~~~~~~---~~p~~gl~~d--~~G-~L~v~~~~-~gi~~~~--~~g---~~~~~~~~----~g~---  158 (370)
                      .+..|+  ..+.......+   ..|+ -+++.  |+- .=||+..- ..|+++.  ++|   .+.++...    ++.   
T Consensus       223 ~l~vWD~~~r~~~Q~idLg~~g~~pL-EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp  301 (461)
T PF05694_consen  223 SLHVWDWSTRKLLQTIDLGEEGQMPL-EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP  301 (461)
T ss_dssp             EEEEEETTTTEEEEEEES-TTEEEEE-EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred             eEEEEECCCCcEeeEEecCCCCCceE-EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence            566677  45544333322   2466 67765  322 34665444 4677776  345   33333221    111   


Q ss_pred             cc--------ccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eE----EEEecCC------
Q 017520          159 KL--------RFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-IT----TLVADGF------  218 (370)
Q Consensus       159 ~~--------~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~----~~~~~~~------  218 (370)
                      .+        ..+.+|.++.|. .|||++.                 .+|.+..||...- .-    ++...+.      
T Consensus       302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W-----------------~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~  364 (461)
T PF05694_consen  302 EMLKPFGAVPPLITDILISLDDRFLYVSNW-----------------LHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDH  364 (461)
T ss_dssp             GGGGGG-EE------EEE-TTS-EEEEEET-----------------TTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--
T ss_pred             ccccccccCCCceEeEEEccCCCEEEEEcc-----------------cCCcEEEEecCCCCCCcEEeEEEECcEeccCCC
Confidence            11        356788888777 5999976                 4578888885421 11    1111211      


Q ss_pred             ---------CCccceEEccCCCEEEEEeC
Q 017520          219 ---------YFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       219 ---------~~p~gi~~~~dg~~l~v~~~  238 (370)
                               ..|+-+.+|-||+.|||+++
T Consensus       365 ~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  365 PVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             TTS------S----EEE-TTSSEEEEE--
T ss_pred             ccccccccCCCCCeEEEccCCeEEEEEee
Confidence                     24678999999999999985

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.40  E-value=26  Score=33.00  Aligned_cols=55  Identities=11%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccceEEcCCCcEEEEeC
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVS  179 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~  179 (370)
                      .+++..+|.+..+....|.+|+.  |+-.+.+ .  .......+++|++++||.+.++-+
T Consensus       149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~--e~~~~~eV~DL~FS~dgk~lasig  205 (398)
T KOG0771|consen  149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-E--EIAHHAEVKDLDFSPDGKFLASIG  205 (398)
T ss_pred             EEEEcCCCCEeeeccccceEEEEecCcchhhh-h--hHhhcCccccceeCCCCcEEEEec
Confidence            57777777766554345655554  3221111 1  112235789999999999877755

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=87.31  E-value=18  Score=33.26  Aligned_cols=136  Identities=15%  Similarity=0.135  Sum_probs=75.3

Q ss_pred             CceEEEEeCCCCeEE-EEecCCCCccceEEcc--CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-
Q 017520          198 HGQLLKYDPSSNITT-LVADGFYFANGVALSR--DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP-  272 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~~--dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-  272 (370)
                      +|.+..||+.+++.- .+...-...|++.|..  ....++.+.+.+ |..||+.......+..+. ..++.| -+++|. 
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~-~~~~~~-f~~ld~n  126 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWT-QQSGTP-FICLDLN  126 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheecc-CCCCCc-ceEeecc
Confidence            578888998876542 2222233457888865  456688888888 999998653222222222 233323 355665 


Q ss_pred             -CCCEEEEE-ecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-C-CcEEEEEeCCCCCccccceeEE
Q 017520          273 -DGTFWIAI-IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D-GTIIRNLVDPTGQLMSFVTSGL  348 (370)
Q Consensus       273 -~G~lwv~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~-g~~~~~~~~~~g~~~~~~t~~~  348 (370)
                       ++++...- ..                               ......++.+|- . -+.++.|.+..   .+.+|.+.
T Consensus       127 ck~~ii~~GtE~-------------------------------~~s~A~v~lwDvR~~qq~l~~~~eSH---~DDVT~lr  172 (376)
T KOG1188|consen  127 CKKNIIACGTEL-------------------------------TRSDASVVLWDVRSEQQLLRQLNESH---NDDVTQLR  172 (376)
T ss_pred             CcCCeEEecccc-------------------------------ccCceEEEEEEeccccchhhhhhhhc---cCcceeEE
Confidence             55554442 21                               112234666663 2 33366665432   44677777


Q ss_pred             EE--CCEEEEEeCCCCeEEEEeC
Q 017520          349 QV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       349 ~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      +.  +.+|.+.+-....+-++++
T Consensus       173 FHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  173 FHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             ecCCCCCeEEeecccceEEeeec
Confidence            75  3456665555556666553

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=87.08  E-value=24  Score=32.35  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             CCcEEEEe--cCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCC-cEEEEeCC-CceEEEc-CCC--eEEEEeecCCc
Q 017520           89 NGVIYTAT--RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEG-HLIICDNA-NGLHKVS-EDG--VENFLSYVNGS  158 (370)
Q Consensus        89 ~G~l~v~~--~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~  158 (370)
                      +|+.+.+-  ..|-|+.+|  .++. ..+...++..+ .|.+.|+. +|.++... +.|...+ .++  +-++ ....|.
T Consensus       103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sIN-eik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf-GG~egH  180 (385)
T KOG1034|consen  103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSIN-EIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF-GGVEGH  180 (385)
T ss_pred             CCCeeEEeecceeEEEEEecchhhhccceeccCccch-hhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe-cccccc
Confidence            35655433  456666677  4443 34455666677 88888766 56665444 4444444 555  4433 233443


Q ss_pred             ccccccceEEcCCCc
Q 017520          159 KLRFANDVVEASDGS  173 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~  173 (370)
                      + ..+-.+.++.+|.
T Consensus       181 r-deVLSvD~~~~gd  194 (385)
T KOG1034|consen  181 R-DEVLSVDFSLDGD  194 (385)
T ss_pred             c-CcEEEEEEcCCCC
Confidence            3 2344566677776

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=87.06  E-value=27  Score=32.78  Aligned_cols=131  Identities=25%  Similarity=0.222  Sum_probs=67.6

Q ss_pred             eEEEEeCCCCeEEEEec------CCCCccceEEccCCCEEEEEeCCc------EEEEEeCCCCCCceeeeccCCCC---C
Q 017520          200 QLLKYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK------CRKYWLKGERKGKLETFAENLPG---A  264 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~~------~~~~p~gi~~~~dg~~l~v~~~~~------l~~~~~~~~~~~~~~~~~~~~~g---~  264 (370)
                      .|+.+|.++++...+..      .......+.+.+|++.+++...++      +..+|.........  ..+..++   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~--~~e~~~~Wv~~  236 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVV--LEETSDGWVDV  236 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEE--EEEESSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEE--EEecCCcceee
Confidence            56777877766533221      112224577888888566665544      66677754322111  1111111   2


Q ss_pred             CCceeEC-CCC--CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCcc
Q 017520          265 PDNINLA-PDG--TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLM  341 (370)
Q Consensus       265 p~~i~~d-~~G--~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~  341 (370)
                      ...+.+- ++|  -+|+....+                                 +..|+.++.+|+....++.  |. .
T Consensus       237 ~~~~~~~~~~~~~~l~~s~~~G---------------------------------~~hly~~~~~~~~~~~lT~--G~-~  280 (353)
T PF00930_consen  237 YDPPHFLGPDGNEFLWISERDG---------------------------------YRHLYLYDLDGGKPRQLTS--GD-W  280 (353)
T ss_dssp             SSEEEE-TTTSSEEEEEEETTS---------------------------------SEEEEEEETTSSEEEESS---SS-S
T ss_pred             ecccccccCCCCEEEEEEEcCC---------------------------------CcEEEEEcccccceecccc--Cc-e
Confidence            3344432 444  466665333                                 5678999998888775554  32 1


Q ss_pred             ccceeEE---EECCEEEEEeCC----CCeEEEEeC
Q 017520          342 SFVTSGL---QVDNHLYVISLT----SNFIGKVQL  369 (370)
Q Consensus       342 ~~~t~~~---~~~g~L~~gs~~----~~~i~~~~~  369 (370)
                       .++.+.   +.++.||+.+..    ...|-++++
T Consensus       281 -~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~  314 (353)
T PF00930_consen  281 -EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL  314 (353)
T ss_dssp             --EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred             -eecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence             232222   224778877665    335555554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=86.37  E-value=11  Score=37.58  Aligned_cols=138  Identities=17%  Similarity=0.131  Sum_probs=76.8

Q ss_pred             eEEcC--CCcEEEEecCCeEEEEe---CCe------EEEEE-ecCCCceeceEEcC--CCcEEEEeCCCceEEEc-CCC-
Q 017520           84 ASMDK--NGVIYTATRDGWIKRLQ---DGT------WVNWK-FIDSQTLVGLTSTK--EGHLIICDNANGLHKVS-EDG-  147 (370)
Q Consensus        84 i~~d~--~G~l~v~~~~g~I~~~~---~g~------~~~~~-~~~~~p~~gl~~d~--~G~L~v~~~~~gi~~~~-~~g-  147 (370)
                      +..|+  +-+|-|++.+|+|..|.   +|-      .+... ....... .|.|.+  .+-|.++.++.-|-.+| .++ 
T Consensus       633 l~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~~~~  711 (1012)
T KOG1445|consen  633 LHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLANAK  711 (1012)
T ss_pred             cccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehhhhh
Confidence            44443  44678888788766555   331      11111 1223344 677764  22345555545555555 454 


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-----
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-----  221 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-----  221 (370)
                       ...+... .    ..+.+++++++|+...+.-                 .+|+|.+|+|.++...+.-.  ..|     
T Consensus       712 ~~~~l~gH-t----dqIf~~AWSpdGr~~AtVc-----------------KDg~~rVy~Prs~e~pv~Eg--~gpvgtRg  767 (1012)
T KOG1445|consen  712 LYSRLVGH-T----DQIFGIAWSPDGRRIATVC-----------------KDGTLRVYEPRSREQPVYEG--KGPVGTRG  767 (1012)
T ss_pred             hhheeccC-c----CceeEEEECCCCcceeeee-----------------cCceEEEeCCCCCCCccccC--CCCccCcc
Confidence             2222221 1    2567899999998776642                 56899999998665443321  222     


Q ss_pred             cceEEccCCCEEEEEeCCc-----EEEEEe
Q 017520          222 NGVALSRDEDYVVVCESWK-----CRKYWL  246 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-----l~~~~~  246 (370)
                      .-|.|.-||+.++++....     |..|+.
T Consensus       768 ARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  768 ARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             eeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            2356667777766666543     556654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=85.95  E-value=25  Score=31.33  Aligned_cols=151  Identities=14%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             CCcceEEcCCCcEEEEe----cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc---CCC-eEE
Q 017520           80 HPEDASMDKNGVIYTAT----RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS---EDG-VEN  150 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~----~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~---~~g-~~~  150 (370)
                      .+++.++.++|..+..-    ....|+... ++...... ...... ...+|++|.+|+.+......++.   .+| ...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~  102 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP  102 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence            57788998888654332    334566666 55444433 222333 66789999999997654333322   344 222


Q ss_pred             EEeecCCcccccccceEEcCCCc--EEEEeCCCCCCCccceecccccCCCceEEEE--eCC-CC-------eEEEEecCC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY--DPS-SN-------ITTLVADGF  218 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~-t~-------~~~~~~~~~  218 (370)
                      ..-...... ..+..|.+++||.  .++....                ..++|+.-  ..+ .+       ..+......
T Consensus       103 ~~v~~~~~~-~~I~~l~vSpDG~RvA~v~~~~----------------~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~  165 (253)
T PF10647_consen  103 VEVDWPGLR-GRITALRVSPDGTRVAVVVEDG----------------GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL  165 (253)
T ss_pred             EEecccccC-CceEEEEECCCCcEEEEEEecC----------------CCCeEEEEEEEeCCCCCcceeccceEeccccc
Confidence            111111110 1577899999994  3344221                22344432  111 12       011111223


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEE-EEeCCC
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRK-YWLKGE  249 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~-~~~~~~  249 (370)
                      .....++|..++..++.+...+  +.. +.+++.
T Consensus       166 ~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~  199 (253)
T PF10647_consen  166 SDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG  199 (253)
T ss_pred             CcceeeeecCCCEEEEEeCCCCCceeEEEEccCC
Confidence            4456789999988555555544  555 555553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=85.88  E-value=31  Score=33.89  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=54.9

Q ss_pred             cEEEEecCCeEEEEe-CCeEEEEE-ecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520           91 VIYTATRDGWIKRLQ-DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l  166 (370)
                      .+.+.+.||++..++ .|+++... ..++... +-...+||.-+++....|+.++. ++| ++...-. .+   ..+..+
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q-~~---~~v~c~  151 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQ-NE---ESIRCA  151 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCceeeeecCCceEEEEeccchHHHHHhh-cC---ceeEEE
Confidence            455677899998888 77776543 3445555 66777899866666567888888 888 4432111 11   356677


Q ss_pred             EEcCCC-cEEEEeC
Q 017520          167 VEASDG-SLYFTVS  179 (370)
Q Consensus       167 ~~d~~G-~l~v~d~  179 (370)
                      +.+|+. ++.++..
T Consensus       152 ~W~p~S~~vl~c~g  165 (737)
T KOG1524|consen  152 RWAPNSNSIVFCQG  165 (737)
T ss_pred             EECCCCCceEEecC
Confidence            888865 5666643

>smart00284 OLF Olfactomedin-like domains

Probab=85.59  E-value=26  Score=31.24  Aligned_cols=148  Identities=15%  Similarity=0.169  Sum_probs=78.0

Q ss_pred             cCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEE--EecC-----------C-CceeceEEcCCCcEEEE---eCC
Q 017520           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNW--KFID-----------S-QTLVGLTSTKEGHLIIC---DNA  137 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~--~~~~-----------~-~p~~gl~~d~~G~L~v~---~~~  137 (370)
                      +.|...+..  +|.+|.-- ....|.|++  .+.+...  .+..           + .-. .+++|.. .|||.   ...
T Consensus        74 ~~GtG~VVY--ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~-GLWvIYat~~~  149 (255)
T smart00284       74 GQGTGVVVY--NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDEN-GLWVIYATEQN  149 (255)
T ss_pred             cccccEEEE--CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCC-ceEEEEeccCC
Confidence            456666666  48888754 345799999  4443321  1111           1 113 5788754 46654   223


Q ss_pred             Cc-e--EEEcCCC--eEEEEeecCCcccccccc-eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          138 NG-L--HKVSEDG--VENFLSYVNGSKLRFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       138 ~g-i--~~~~~~g--~~~~~~~~~g~~~~~~~~-l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                      .| |  -++++.-  ++......-..+ ..-+. |++   |.||++++...             ....--+.||..+++-
T Consensus       150 ~g~ivvSkLnp~tL~ve~tW~T~~~k~-sa~naFmvC---GvLY~~~s~~~-------------~~~~I~yayDt~t~~~  212 (255)
T smart00284      150 AGKIVISKLNPATLTIENTWITTYNKR-SASNAFMIC---GILYVTRSLGS-------------KGEKVFYAYDTNTGKE  212 (255)
T ss_pred             CCCEEEEeeCcccceEEEEEEcCCCcc-cccccEEEe---eEEEEEccCCC-------------CCcEEEEEEECCCCcc
Confidence            34 3  3566433  333222211111 11122 333   89999975210             1222356788876654


Q ss_pred             EEEecC----CCCccceEEccCCCEEEEEeCCcEEEEEe
Q 017520          212 TLVADG----FYFANGVALSRDEDYVVVCESWKCRKYWL  246 (370)
Q Consensus       212 ~~~~~~----~~~p~gi~~~~dg~~l~v~~~~~l~~~~~  246 (370)
                      ..+.-.    ......+...|..+.||+-+.+.+..|++
T Consensus       213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wdng~~l~Y~v  251 (255)
T smart00284      213 GHLDIPFENMYEYISMLDYNPNDRKLYAWNNGHLVHYDI  251 (255)
T ss_pred             ceeeeeeccccccceeceeCCCCCeEEEEeCCeEEEEEE
Confidence            332111    22334578889888899999887777765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=85.59  E-value=39  Score=33.28  Aligned_cols=105  Identities=11%  Similarity=0.116  Sum_probs=65.6

Q ss_pred             EEEEecCCeEEEEe--CCeEEEEEecCCCc---eeceE-EcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCccccc
Q 017520           92 IYTATRDGWIKRLQ--DGTWVNWKFIDSQT---LVGLT-STKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSKLRF  162 (370)
Q Consensus        92 l~v~~~~g~I~~~~--~g~~~~~~~~~~~p---~~gl~-~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~  162 (370)
                      +..|+..|.|+-++  .|+++.....+..+   . .+. -+.-|.+|-++.+..+..++ ..+  +... .  .+  ...
T Consensus        73 lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~-~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~--~~--~~~  146 (541)
T KOG4547|consen   73 LVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVN-EILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-K--EQ--KPL  146 (541)
T ss_pred             EEeecCCccEEEEEecCCeEEEEEecCCCCCcce-eeecccccCceEecCCceeEEEEecccceeeeee-c--cC--CCc
Confidence            44566777788777  66666555433322   2 222 12345677776666677777 444  2222 1  11  135


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p  221 (370)
                      +..+++.+||.+..+-+                   +.|-.||.+++++-..+++...|
T Consensus       147 ~~sl~is~D~~~l~~as-------------------~~ik~~~~~~kevv~~ftgh~s~  186 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS-------------------RQIKVLDIETKEVVITFTGHGSP  186 (541)
T ss_pred             cceEEEcCCCCEEEecc-------------------ceEEEEEccCceEEEEecCCCcc
Confidence            67899999998877733                   57888998888887777776655

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=85.57  E-value=29  Score=31.72  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=53.3

Q ss_pred             cEEEEecCCeEEEEeCCeEEE---EEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCCeEEEEeecCCcccccccc
Q 017520           91 VIYTATRDGWIKRLQDGTWVN---WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDGVENFLSYVNGSKLRFAND  165 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g~~~~~~~~~g~~~~~~~~  165 (370)
                      .|..+..||.|..|+.|.++.   +....++.. ++++.|.|.|-++-.+.+.++..  -.|...+.-...    +.+..
T Consensus        99 hLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt-~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~----~~at~  173 (362)
T KOG0294|consen   99 HLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVT-DLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK----NKATL  173 (362)
T ss_pred             heeeecCCCcEEEEEcCCeEEeeeecccccccc-eeEecCCCceEEEEcCCceeeeehhhcCccceeeccC----Cccee
Confidence            678888899999999665543   334556778 99999999998876666666655  344111111111    12334


Q ss_pred             eEEcCCCc-EEEE
Q 017520          166 VVEASDGS-LYFT  177 (370)
Q Consensus       166 l~~d~~G~-l~v~  177 (370)
                      +.++++|. +++.
T Consensus       174 v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  174 VSWSPQGDHFVVS  186 (362)
T ss_pred             eEEcCCCCEEEEE
Confidence            78889996 6555

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=85.56  E-value=4.1  Score=24.51  Aligned_cols=37  Identities=5%  Similarity=0.141  Sum_probs=25.6

Q ss_pred             CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEc
Q 017520           89 NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTST  126 (370)
Q Consensus        89 ~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d  126 (370)
                      .+.||+++ ..+.|..++  +++...-...+..|. +++++
T Consensus         3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~   42 (42)
T TIGR02276         3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS   42 (42)
T ss_pred             CCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence            34699988 577899998  555544445566787 77764

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.34  E-value=43  Score=33.56  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=19.6

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ  105 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~  105 (370)
                      .|..++..|+|+..+...+|.-..+.
T Consensus       353 yPq~L~hsPNGrfV~VcgdGEyiIyT  378 (794)
T KOG0276|consen  353 YPQTLAHSPNGRFVVVCGDGEYIIYT  378 (794)
T ss_pred             chHHhccCCCCcEEEEecCccEEEEE
Confidence            68889999999888877777544443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=85.26  E-value=30  Score=33.60  Aligned_cols=133  Identities=15%  Similarity=0.091  Sum_probs=69.4

Q ss_pred             cCCeEEEEe--CC-eEEEEEecCCCceeceEEcCCC-cEEEEeCCCceEEEc-CCC-eEEEEeecCCccccc-ccceEEc
Q 017520           97 RDGWIKRLQ--DG-TWVNWKFIDSQTLVGLTSTKEG-HLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRF-ANDVVEA  169 (370)
Q Consensus        97 ~~g~I~~~~--~g-~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~-~~~l~~d  169 (370)
                      ..|.|....  ++ +...+....+...--+.+.+.- .|+....+.|++.+. -+| ...+ ..  ...... ..+|++.
T Consensus       141 ~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~-~~--~~~HsAP~~gicfs  217 (673)
T KOG4378|consen  141 DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF-HA--SEAHSAPCRGICFS  217 (673)
T ss_pred             cCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-ch--hhhccCCcCcceec
Confidence            445555554  22 2333433333221034555444 344444456665554 455 2221 10  011112 3578998


Q ss_pred             CCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          170 SDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       170 ~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      |... |+++..                 -+-+|+.||..++....-... ..| ..++|.++|..|......+ |+.||+
T Consensus       218 psne~l~vsVG-----------------~Dkki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~G~~i~YD~  279 (673)
T KOG4378|consen  218 PSNEALLVSVG-----------------YDKKINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSKGELIAYDM  279 (673)
T ss_pred             CCccceEEEec-----------------ccceEEEeecccccccceeee-cCCcceeeecCCceEEEeecCCceEEEEec
Confidence            8764 555533                 235789999764433211111 123 4689999998777666666 999999


Q ss_pred             CCCC
Q 017520          247 KGER  250 (370)
Q Consensus       247 ~~~~  250 (370)
                      .+.+
T Consensus       280 R~~k  283 (673)
T KOG4378|consen  280 RSTK  283 (673)
T ss_pred             ccCC
Confidence            7653

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=84.01  E-value=33  Score=31.14  Aligned_cols=135  Identities=10%  Similarity=0.049  Sum_probs=77.5

Q ss_pred             ceEEcCC-CcEEEEeCCCceEEEc-C-CCe-EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520          122 GLTSTKE-GHLIICDNANGLHKVS-E-DGV-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (370)
Q Consensus       122 gl~~d~~-G~L~v~~~~~gi~~~~-~-~g~-~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~  197 (370)
                      .+.|++. +.|.++.|++-+..++ + +.. ..+..   +.   -+-+.++.++-++|+++.                  
T Consensus        18 ~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~---~~---plL~c~F~d~~~~~~G~~------------------   73 (323)
T KOG1036|consen   18 SVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKH---GA---PLLDCAFADESTIVTGGL------------------   73 (323)
T ss_pred             eEEEcCcCCcEEEEeccCcEEEEeccchhhhhheec---CC---ceeeeeccCCceEEEecc------------------
Confidence            6778754 4688888876666666 2 222 22211   11   233557767778888853                  


Q ss_pred             CceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-
Q 017520          198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-  275 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-  275 (370)
                      +|.|.++|..++....+...-.....|......+.++-+..++ |..+|+...    ........+  -.-.+.|-.|+ 
T Consensus        74 dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~~d~~--kkVy~~~v~g~~  147 (323)
T KOG1036|consen   74 DGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGTFDQG--KKVYCMDVSGNR  147 (323)
T ss_pred             CceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc----ccccccccC--ceEEEEeccCCE
Confidence            4889999999888777666555566777776555344444455 777775431    000000111  12244566664 


Q ss_pred             EEEEEecCchh
Q 017520          276 FWIAIIKLDAR  286 (370)
Q Consensus       276 lwv~~~~~~~~  286 (370)
                      |.||+.+....
T Consensus       148 LvVg~~~r~v~  158 (323)
T KOG1036|consen  148 LVVGTSDRKVL  158 (323)
T ss_pred             EEEeecCceEE
Confidence            66667765433

>smart00564 PQQ beta-propeller repeat

Probab=83.12  E-value=2.5  Score=24.03  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=16.7

Q ss_pred             CCCcEEEEecCCeEEEEe--CCeEE
Q 017520           88 KNGVIYTATRDGWIKRLQ--DGTWV  110 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~g~~~  110 (370)
                      .+|.+|+++.+|.++.++  +|+..
T Consensus         5 ~~~~v~~~~~~g~l~a~d~~~G~~~   29 (33)
T smart00564        5 SDGTVYVGSTDGTLYALDAKTGEIL   29 (33)
T ss_pred             ECCEEEEEcCCCEEEEEEcccCcEE
Confidence            456788888888888888  56543

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins

Probab=82.98  E-value=19  Score=27.54  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CCCcceEEcCCCcEEEEe--cCCeEEEEe-CCeEEEEEecCC-CceeceEEc-CCCc-EEEEeCCCceEEEcCCCeEEEE
Q 017520           79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVNWKFIDS-QTLVGLTST-KEGH-LIICDNANGLHKVSEDGVENFL  152 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~--~~g~I~~~~-~g~~~~~~~~~~-~p~~gl~~d-~~G~-L~v~~~~~gi~~~~~~g~~~~~  152 (370)
                      ..|.-+..+++|+.+.++  ..+++..|- +..++++...++ +|.=-+..+ +.+. .-|-....|.+++.      +.
T Consensus         4 isPSYvy~~sng~~~ass~g~~~g~nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~sf~I~kn~dG~~~Ft------~~   77 (123)
T PF11763_consen    4 ISPSYVYLNSNGYMIASSNGDPEGENVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSSFNIIKNNDGTYQFT------FV   77 (123)
T ss_pred             cccceEEEcCCCcEEeeccCCcCceeeEEecCCcceEEEecccccEEEEeecCCCcceEEEEecCCCcEEEE------Ec
Confidence            368888999999999887  333466665 666666655543 443012222 1121 11111112222221      11


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVS  179 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~  179 (370)
                      .    .....+-.+.+..+|++||+..
T Consensus        78 e----~~~~ep~~l~~l~dgri~~ts~  100 (123)
T PF11763_consen   78 E----SSFSEPLDLHTLSDGRIWFTSN  100 (123)
T ss_pred             c----cCCCCcEEEEEecCCcEEEEcc
Confidence            1    1123566788889999999964

It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=82.86  E-value=69  Score=34.27  Aligned_cols=178  Identities=16%  Similarity=0.171  Sum_probs=101.0

Q ss_pred             CCcceEEc-CCCcEEEEe-cCCeEEEEe-CCeEEEE--EecCCCceeceEEcC-CCcEEEEeCCCceEEEc-CCC-e-EE
Q 017520           80 HPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGTWVNW--KFIDSQTLVGLTSTK-EGHLIICDNANGLHKVS-EDG-V-EN  150 (370)
Q Consensus        80 ~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g~~~~~--~~~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~-~~g-~-~~  150 (370)
                      .+..+.+| .++.+|..+ ....|.+.. ++.....  ....-.+. ++++|. .+++|..|.......+. .+| . ..
T Consensus       438 ~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~v  516 (877)
T KOG1215|consen  438 NAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKV  516 (877)
T ss_pred             cceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCceeE
Confidence            34344444 355777777 566677776 4443322  22233567 899985 45799988764333333 455 3 33


Q ss_pred             EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~  228 (370)
                      ++...    +..+..+++++ .|.+|.++...                ..++-|-..+......+ ..+...|+|++++-
T Consensus       517 l~~~~----l~~~r~~~v~p~~g~~~wtd~~~----------------~~~i~ra~~dg~~~~~l~~~~~~~p~glt~d~  576 (877)
T KOG1215|consen  517 LVSKD----LDLPRSIAVDPEKGLMFWTDWGQ----------------PPRIERASLDGSERAVLVTNGILWPNGLTIDY  576 (877)
T ss_pred             EEecC----CCCccceeeccccCeeEEecCCC----------------CchhhhhcCCCCCceEEEeCCccCCCcceEEe
Confidence            33221    13577889998 57888888641                11344444443333333 34478999999998


Q ss_pred             CCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          229 DEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       229 dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..+.+||.+...   +.+.+.++..   .+.........|..+.+-.+ ++|-....
T Consensus       577 ~~~~~yw~d~~~~~~i~~~~~~g~~---r~~~~~~~~~~p~~~~~~~~-~iyw~d~~  629 (877)
T KOG1215|consen  577 ETDRLYWADAKLDYTIESANMDGQN---RRVVDSEDLPHPFGLSVFED-YIYWTDWS  629 (877)
T ss_pred             ecceeEEEcccCCcceeeeecCCCc---eEEeccccCCCceEEEEecc-eeEEeecc
Confidence            777799998765   6777766642   21122222234666666443 34444433

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=82.70  E-value=38  Score=30.81  Aligned_cols=61  Identities=18%  Similarity=0.262  Sum_probs=35.2

Q ss_pred             CCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEe
Q 017520          218 FYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .+..|.|+|.|....+.-+...+.+.||=+..+   .+... +..+.-..--.+..+|.+|+=..
T Consensus       251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~fn~~G~ifaYA~  312 (347)
T KOG0647|consen  251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCSFNRNGSIFAYAL  312 (347)
T ss_pred             eEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeEecCCCCEEEEEe
Confidence            566789999998776666666666666632211   11111 12332233345788998876543

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=82.25  E-value=1.2  Score=26.79  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=15.8

Q ss_pred             cccceEEcCCCcEEEEeC
Q 017520          162 FANDVVEASDGSLYFTVS  179 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~  179 (370)
                      .+++|++|++|++|++-.
T Consensus        14 ~~~~IavD~~GNiYv~G~   31 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTGY   31 (38)
T ss_pred             eEEEEEECCCCCEEEEEe
Confidence            578999999999999954

SBBP stands for Seven Bladed Beta Propeller.

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=82.09  E-value=54  Score=32.19  Aligned_cols=176  Identities=10%  Similarity=0.059  Sum_probs=94.1

Q ss_pred             CCCcceEEcCCC-cEEEEecCCeEEEEe--C-CeEEEEEe-cCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC---e
Q 017520           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--D-GTWVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG---V  148 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~-g~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g---~  148 (370)
                      ..+.++..+++| .|-+|+.+|.|..+|  . .+.+.+.. ...+.- .++..  +.++.+... ..|...+ +..   .
T Consensus       218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg-~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVG-SLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeE-EEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            467778888776 466888889888888  2 23333332 233333 44543  555554333 3455555 332   2


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCCCccceEEc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALS  227 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~  227 (370)
                      ..    ..+. -..+.++.+.+||+...+-.                 .++.+..+|..+.... .+.........++|+
T Consensus       295 ~~----~~~H-~qeVCgLkws~d~~~lASGg-----------------nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc  352 (484)
T KOG0305|consen  295 ST----LQGH-RQEVCGLKWSPDGNQLASGG-----------------NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC  352 (484)
T ss_pred             hh----hhcc-cceeeeeEECCCCCeeccCC-----------------CccceEeccCCCccccEEEeccceeeeEeeeC
Confidence            21    1111 13678899999988665532                 3467778876433322 222223344578888


Q ss_pred             cCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          228 RDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       228 ~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      |-...|+.+..+.   .++||-.-  .+....-.+ ..+...++...+..+=.+++.+
T Consensus       353 P~q~~lLAsGGGs~D~~i~fwn~~--~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG  407 (484)
T KOG0305|consen  353 PWQSGLLATGGGSADRCIKFWNTN--TGARIDSVD-TGSQVCSLIWSKKYKELLSTHG  407 (484)
T ss_pred             CCccCceEEcCCCcccEEEEEEcC--CCcEecccc-cCCceeeEEEcCCCCEEEEecC
Confidence            8666577766554   56665221  122111111 2234566777776654455443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=81.91  E-value=55  Score=32.15  Aligned_cols=146  Identities=8%  Similarity=0.010  Sum_probs=79.7

Q ss_pred             cCCCceeceEEcCCCcEEEEeCCC-ceEEEcCC--C-eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccce
Q 017520          115 IDSQTLVGLTSTKEGHLIICDNAN-GLHKVSED--G-VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       115 ~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~~~--g-~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~  189 (370)
                      ...... |+.+.+|++........ .++.++..  . ...+...     ...+..+++.|- ..|..+-.+         
T Consensus       300 H~qeVC-gLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H-----~aAVKA~awcP~q~~lLAsGGG---------  364 (484)
T KOG0305|consen  300 HRQEVC-GLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH-----TAAVKALAWCPWQSGLLATGGG---------  364 (484)
T ss_pred             ccceee-eeEECCCCCeeccCCCccceEeccCCCccccEEEecc-----ceeeeEeeeCCCccCceEEcCC---------
Confidence            344567 99999999888765443 45555532  2 2222221     135677888873 355554332         


Q ss_pred             ecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520          190 LDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPD  266 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~  266 (370)
                            ..+..|.-+|..++....-.......-.+.+++..+.+..+--..   |..|.....  .....+. ......-
T Consensus       365 ------s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~--~~~~~l~-gH~~RVl  435 (484)
T KOG0305|consen  365 ------SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM--KLVAELL-GHTSRVL  435 (484)
T ss_pred             ------CcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--ceeeeec-CCcceeE
Confidence                  245677778887776543334445566788999988777775433   444443221  1111111 1111122


Q ss_pred             ceeECCCCC-EEEEEecCc
Q 017520          267 NINLAPDGT-FWIAIIKLD  284 (370)
Q Consensus       267 ~i~~d~~G~-lwv~~~~~~  284 (370)
                      -++..+||. +-++.....
T Consensus       436 ~la~SPdg~~i~t~a~DET  454 (484)
T KOG0305|consen  436 YLALSPDGETIVTGAADET  454 (484)
T ss_pred             EEEECCCCCEEEEecccCc
Confidence            256788885 555554443

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=81.75  E-value=35  Score=31.91  Aligned_cols=117  Identities=16%  Similarity=0.163  Sum_probs=68.7

Q ss_pred             CCceeceEEcC--CCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceec
Q 017520          117 SQTLVGLTSTK--EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       117 ~~p~~gl~~d~--~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~  191 (370)
                      +..+ ||.+++  .|.|.-+|-..+|+... .+| +.+=...+.+ .-.++.+|..+|.- .++++.+            
T Consensus       212 ~EGy-~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS------------  277 (440)
T KOG0302|consen  212 GEGY-GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCS------------  277 (440)
T ss_pred             ccce-eeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeee------------
Confidence            4456 777765  67788777666777777 456 4432222223 23578899998854 5777754            


Q ss_pred             ccccCCCceEEEEeCCCCeE--EEEec-CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCC
Q 017520          192 ILEGKPHGQLLKYDPSSNIT--TLVAD-GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKG  252 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~~~--~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~  252 (370)
                           .++.|..+|...+..  .+... .-.-.|-|.++.+..+|......+ +..+|+..-+.+
T Consensus       278 -----~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~  337 (440)
T KOG0302|consen  278 -----CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG  337 (440)
T ss_pred             -----cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC
Confidence                 567777777654421  11111 122457788888777444444445 777777654433

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=81.72  E-value=13  Score=34.82  Aligned_cols=108  Identities=12%  Similarity=0.191  Sum_probs=58.8

Q ss_pred             CceeceEEcCCCc-EEEEeCCCce--EEEcCC--CeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceec
Q 017520          118 QTLVGLTSTKEGH-LIICDNANGL--HKVSED--GVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       118 ~p~~gl~~d~~G~-L~v~~~~~gi--~~~~~~--g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~  191 (370)
                      .+. .....++|+ |++++...+.  +.+..+  +.+ +.......  ..++.+.+..+. .+-++|..           
T Consensus        64 a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k-l~~~~~v~--~~~~ai~~~~~~~sv~v~dka-----------  128 (390)
T KOG3914|consen   64 APA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK-LLDVSCVP--KRPTAISFIREDTSVLVADKA-----------  128 (390)
T ss_pred             ccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcce-eeeEeecc--cCcceeeeeeccceEEEEeec-----------
Confidence            344 455556676 4555555554  333321  222 11111111  245556555443 46666542           


Q ss_pred             ccccCCCceEEEEeC---CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520          192 ILEGKPHGQLLKYDP---SSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~---~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~  247 (370)
                             |-++.+|.   +.+..+.....+..-..+++++|.++++.++... |++.+..
T Consensus       129 -------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~yp  181 (390)
T KOG3914|consen  129 -------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYP  181 (390)
T ss_pred             -------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence                   44555543   2244455555566667899999999999999988 6655543

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=81.27  E-value=1.3  Score=26.72  Aligned_cols=17  Identities=29%  Similarity=0.460  Sum_probs=14.5

Q ss_pred             CCcceEEcCCCcEEEEe
Q 017520           80 HPEDASMDKNGVIYTAT   96 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~   96 (370)
                      .+.+|++|++|++|++-
T Consensus        14 ~~~~IavD~~GNiYv~G   30 (38)
T PF06739_consen   14 YGNGIAVDSNGNIYVTG   30 (38)
T ss_pred             eEEEEEECCCCCEEEEE
Confidence            58889999999999764

SBBP stands for Seven Bladed Beta Propeller.

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=80.60  E-value=75  Score=32.92  Aligned_cols=145  Identities=10%  Similarity=-0.007  Sum_probs=76.0

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe------cCCCceeceEEcCCCcEEEEe-CCCceEEEcCCCe--E
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF------IDSQTLVGLTSTKEGHLIICD-NANGLHKVSEDGV--E  149 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~------~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~~~g~--~  149 (370)
                      |+.|.....|....-..+-.++.+.  .+. +....      ..-... ..++++.++..++. ..++|+.+..-|.  .
T Consensus       163 ~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t-~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~  240 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNIT-CVALSPNERYLAAGDSDGRILVWRDFGSSDD  240 (792)
T ss_pred             CccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccce-eEEeccccceEEEeccCCcEEEEeccccccc
Confidence            7778877777655444455577776  322 11100      000123 56777777755543 3334444432110  0


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-cceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-NGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-~gi~~~~  228 (370)
                      ......---....++.+++..+|.-..+-.                 ..+.+.++..+|++ +.+...+..| -++.+++
T Consensus       241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-----------------~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~  302 (792)
T KOG1963|consen  241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGG-----------------REGVLVLWQLETGK-KQFLPRLGSPILHIVVSP  302 (792)
T ss_pred             cccceEEEecccccceeEEecCCceEeecc-----------------cceEEEEEeecCCC-cccccccCCeeEEEEEcC
Confidence            000000000113578899999985333321                 34667778778777 5556666555 6899999


Q ss_pred             CCCEEEEEeCCc-EEEEE
Q 017520          229 DEDYVVVCESWK-CRKYW  245 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~  245 (370)
                      |++..-+.-.++ |..+.
T Consensus       303 ds~~~sl~~~DNqI~li~  320 (792)
T KOG1963|consen  303 DSDLYSLVLEDNQIHLIK  320 (792)
T ss_pred             CCCeEEEEecCceEEEEe
Confidence            998544444444 44443

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=80.43  E-value=60  Score=34.73  Aligned_cols=150  Identities=15%  Similarity=0.179  Sum_probs=91.1

Q ss_pred             EecCCCcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCeEE-EEEec-CCCceeceEEcC-CCcEEEEeCCC--ceEEE
Q 017520           72 KVGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTWV-NWKFI-DSQTLVGLTSTK-EGHLIICDNAN--GLHKV  143 (370)
Q Consensus        72 ~~~~~~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~~~-~~~~~-~~~p~~gl~~d~-~G~L~v~~~~~--gi~~~  143 (370)
                      ....| .-.|+++++|- .+++|..+ ....+...+ +|... ++... ...|. .+++++ .|.+|+.+++.  .+.+-
T Consensus       474 ~~~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra  551 (877)
T KOG1215|consen  474 LCGDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERA  551 (877)
T ss_pred             EeccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhh
Confidence            34444 57899999995 67899988 444455555 55432 22222 25677 889987 55688888764  23333


Q ss_pred             cCCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCC
Q 017520          144 SEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFY  219 (370)
Q Consensus       144 ~~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~  219 (370)
                      ..+|  ...+...  +  ...+++++.|- +..+|..|.-                ....+...+.+++..+ .......
T Consensus       552 ~~dg~~~~~l~~~--~--~~~p~glt~d~~~~~~yw~d~~----------------~~~~i~~~~~~g~~r~~~~~~~~~  611 (877)
T KOG1215|consen  552 SLDGSERAVLVTN--G--ILWPNGLTIDYETDRLYWADAK----------------LDYTIESANMDGQNRRVVDSEDLP  611 (877)
T ss_pred             cCCCCCceEEEeC--C--ccCCCcceEEeecceeEEEccc----------------CCcceeeeecCCCceEEeccccCC
Confidence            3456  4444332  1  45789999985 5689988863                1123555555544433 3344566


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEE
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYW  245 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~  245 (370)
                      .|.++++..+  .+|+++...  +.+..
T Consensus       612 ~p~~~~~~~~--~iyw~d~~~~~~~~~~  637 (877)
T KOG1215|consen  612 HPFGLSVFED--YIYWTDWSNRAISRAE  637 (877)
T ss_pred             CceEEEEecc--eeEEeeccccceEeee
Confidence            7777776644  488888766  44444

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=80.32  E-value=4  Score=42.38  Aligned_cols=64  Identities=16%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~  144 (370)
                      =.|++-+.+|+|-||+..|.|.-|+ .|+ .++..+..|.|..+|.++.||+-.+|....-|+.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEE
Confidence            3567888999999999999999999 443 444455567777699999999988877665566665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PHA02790 Kelch-like protein; Provisional

Probab=80.10  E-value=64  Score=31.78  Aligned_cols=62  Identities=6%  Similarity=0.003  Sum_probs=35.4

Q ss_pred             CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc-c-eEEccCCCEEEEEeCC----c-EE
Q 017520          170 SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN-G-VALSRDEDYVVVCESW----K-CR  242 (370)
Q Consensus       170 ~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~-g-i~~~~dg~~l~v~~~~----~-l~  242 (370)
                      -+|.||+.-...               ....+.+||+.++++..+. .+..+. + .+..-+|+ +|+..-.    . +.
T Consensus       317 ~~~~iYviGG~~---------------~~~sve~ydp~~n~W~~~~-~l~~~r~~~~~~~~~g~-IYviGG~~~~~~~ve  379 (480)
T PHA02790        317 ANNKLYVVGGLP---------------NPTSVERWFHGDAAWVNMP-SLLKPRCNPAVASINNV-IYVIGGHSETDTTTE  379 (480)
T ss_pred             ECCEEEEECCcC---------------CCCceEEEECCCCeEEECC-CCCCCCcccEEEEECCE-EEEecCcCCCCccEE
Confidence            578999884320               1245889999888776543 232221 2 12223454 8886431    2 77


Q ss_pred             EEEeCC
Q 017520          243 KYWLKG  248 (370)
Q Consensus       243 ~~~~~~  248 (370)
                      +||+..
T Consensus       380 ~ydp~~  385 (480)
T PHA02790        380 YLLPNH  385 (480)
T ss_pred             EEeCCC
Confidence            888654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	370
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-10
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		6e-10
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		3e-09

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 103/246 (41%), Gaps = 22/246 (8%)
Query: 50  SPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTW 109
           SP+L E+   A   A     F    +G     +D  + K    Y     G++       +
Sbjct: 6   SPILKEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIK----YEGPNSGFVDFAYASPY 61
Query: 110 VNWKFIDSQT------LVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVN 156
            N  F ++ T      L G T     + +   L I D    L  V  +G       + V+
Sbjct: 62  WNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVD 121
Query: 157 GSKLRFANDV-VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA 215
           G   ++   V V+   G +YFT  S+ Y        +      G+L+KYDPS+  TTL+ 
Sbjct: 122 GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181
Query: 216 DGFYFANGVALSRDEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPD 273
              +   G  +S D  +V+V E  S +  KYWL+G +KG  E   + +P  P NI    D
Sbjct: 182 KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNAD 239
Query: 274 GTFWIA 279
           G FW++
Sbjct: 240 GHFWVS 245

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 97/233 (41%), Gaps = 37/233 (15%)
Query: 82  EDASMDKNGVIYTATRDGWIKRLQDGTWVNWK-----FID-------------------- 116
           E  S   N   + +T  G+   +QDG  + ++     F+D                    
Sbjct: 6   EAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAE 65
Query: 117 SQTLVGLT-----STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV-VE 168
            + L G T     + +   L I D    L  V  +G       + V+G   ++   V V+
Sbjct: 66  KRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVD 125
Query: 169 ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR 228
              G +YFT  S+ Y        +      G+L+KYDPS+  TTL+    +   G  +S 
Sbjct: 126 QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSA 185
Query: 229 DEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
           D  +V+V E  S +  KYWL+G +KG  E   + +P  P NI    DG FW++
Sbjct: 186 DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 236

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 166 VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225
            V+   G +YFT  S+ Y               G+L KYDPS+  TTL+    +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIXDTSDKTGRLXKYDPSTKETTLLXKELHVPGGAE 191
Query: 226 LSRDEDYVVVCE--SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
           +S D  +V+V E  S +  KYWL+G +KG  E   + +P  P NI    DG FW++
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVS 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-67
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	3e-30
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	1e-21
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	1e-16
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	7e-16
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	1e-15
2p4o_A	306	Hypothetical protein; putative lactonase, structur	5e-12
2p4o_A	306	Hypothetical protein; putative lactonase, structur	1e-06
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-11
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	4e-08
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	6e-06
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	3e-10
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	9e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-08
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	6e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	5e-05

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  215 bits (548), Expect = 1e-67
 Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 54/327 (16%)

Query: 72  KVGEGSVNHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLV------- 121
            + E     P   + D      YT+ +DG + + +  +  +V++ +              
Sbjct: 12  ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST 71

Query: 122 ------------GLT-STKEGHLIICDNANGLHKVSEDG--VENFLSYVNGSKLRFANDV 166
                        ++ + +   L I D    L  V  +G       + V+G   ++   V
Sbjct: 72  DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV 131

Query: 167 -VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA 225
            V+   G +YFT  S+ Y        +      G+L+KYDPS+  TTL+    +   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191

Query: 226 LSRDEDYVVVCESWKCR--KYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL 283
           +S D  +V+V E    +  KYWL+G +KG  E     +P  P NI    DG FW++    
Sbjct: 192 VSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLV-KIPN-PGNIKRNADGHFWVSS--- 246

Query: 284 DARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSF 343
                                 +     +        I   E G I+  +  P       
Sbjct: 247 ---------------------SEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAGEH 285

Query: 344 VTSGLQVDNHLYVISLTSNFIGKVQLS 370
                + D  LY+ +L    +G +   
Sbjct: 286 FEQIQEHDGLLYIGTLFHGSVGILVYD 312

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score =  117 bits (294), Expect = 3e-30
 Identities = 53/369 (14%), Positives = 103/369 (27%), Gaps = 58/369 (15%)

Query: 32  LLVCLIAFLLQIVYFSPISPVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGV 91
             + L+   L +      S           ++  +L +   V +G  N  ED  +  NG+
Sbjct: 5   TALTLLGMGLALFDR-QKSSFQTRFNVHREVTPVELPNCNLV-KGIDNGSEDLEILPNGL 62

Query: 92  IYTATRDGWIK---------------------------RLQDGTWVNWKFIDSQTLVGLT 124
            + ++   +                              +   T     F        + 
Sbjct: 63  AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID 122

Query: 125 STKEGHLIICDNANG------LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTV 178
                +L++ ++              E+     L  +    L   ND+V       Y T 
Sbjct: 123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATN 182

Query: 179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES 238
                 P+    ++  G     +  Y P+     +VA+GF FANG+ +S D  YV + E 
Sbjct: 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSPND--VRVVAEGFDFANGINISPDGKYVYIAEL 240

Query: 239 W--KCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSK 295
              K   Y               +     DNI++ P  G  W+       R       + 
Sbjct: 241 LAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENP 299

Query: 296 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLY 355
               VL                  +  +  +   +  +    G ++   T        L 
Sbjct: 300 PGSEVL-----------------RIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLL 342

Query: 356 VISLTSNFI 364
           + ++    +
Sbjct: 343 IGTVFHKAL 351

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 93.3 bits (232), Expect = 1e-21
 Identities = 45/245 (18%), Positives = 78/245 (31%), Gaps = 26/245 (10%)

Query: 55  EVPQPAVLSATQLQDFIKVGEGSVNHPE-DASMDKNGVIYTATRDGWIKRL--QDGTWVN 111
            V +P     T++ + I   EG V     D  +    V       G I R+  + G    
Sbjct: 4   PVIEPLF---TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV 60

Query: 112 WKFIDSQTLV----GLTSTKEGHLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFAN 164
               +         G    ++ + +   D   GL  V  DG   E       G +++  N
Sbjct: 61  ICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN 120

Query: 165 DVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGV 224
           D     +G+L+ T  +               +  G +  +     +   V   F F NG+
Sbjct: 121 DCAFDYEGNLWIT--APAGEVAPADYTRSMQEKFGSIYCFTTDGQM-IQVDTAFQFPNGI 177

Query: 225 ALSRDED----YVVVCESWKCR--KYWLKGE----RKGKLETFAENLPGAPDNINLAPDG 274
           A+    D     ++V E+   +   Y +KG      K           G  D ++   D 
Sbjct: 178 AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN 237

Query: 275 TFWIA 279
              +A
Sbjct: 238 NLLVA 242

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 42/248 (16%), Positives = 74/248 (29%), Gaps = 18/248 (7%)

Query: 44  VYFSPISPVLDEVPQPAVL---SATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGW 100
           V      P +      A L       L D     EG              ++++      
Sbjct: 14  VPADCDPPRITHAALAARLGDARLLTLYDQATWSEGPAWWEAQ-----RTLVWSDLVGRR 68

Query: 101 IKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLH-KVSEDG-VENFLSYVNGS 158
           +   ++   V+     +    G     +  L+ C++      +   DG     +    G 
Sbjct: 69  VLGWREDGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGK 128

Query: 159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF 218
           +L   ND++ A DG+++FT                    H  + +  P  +         
Sbjct: 129 RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP-LQRMADL 187

Query: 219 YFANGVALSRDEDYVVVCESWKCRKY----WLKGERKGKL---ETFAENLPGAPDNINLA 271
              NG+A S DE  + V ++ +             R G L     FA    G PD   + 
Sbjct: 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD 247

Query: 272 PDGTFWIA 279
             G  W +
Sbjct: 248 RGGWLWSS 255

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 76.2 bits (188), Expect = 7e-16
 Identities = 47/228 (20%), Positives = 77/228 (33%), Gaps = 23/228 (10%)

Query: 63  SATQLQDFIKVGEGSVNHPEDASM---D-KNGVIYTATRDG-WIKRLQDGTWVNWKFIDS 117
            A +L D     EG V  P  +++   D +    +  + DG     +      N      
Sbjct: 19  EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN------ 72

Query: 118 QTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSL 174
               G    K+GHLI C +    L +  E G   E+      G KL   NDV  A DGSL
Sbjct: 73  ----GHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSL 128

Query: 175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV 234
           +F+  +      E         P   + +  P   + +         NG+A     + +V
Sbjct: 129 WFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTL-SAPIRDRVKPNGLAFLPSGNLLV 187

Query: 235 VCESWKCRKYWLKGERKGKL---ETFAENLPGAPDNINLAPDGTFWIA 279
             ++     +      +G+           PG  D + +   G  W +
Sbjct: 188 S-DTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS 234

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 75.9 bits (187), Expect = 1e-15
 Identities = 38/204 (18%), Positives = 62/204 (30%), Gaps = 30/204 (14%)

Query: 88  KNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHK 142
             G I+    +                        +   K+G L +C         G+  
Sbjct: 64  FEGNIFKINPET-------KEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116

Query: 143 VSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL 202
            +E+G        + S     +D+V  S G  YFT                   P G + 
Sbjct: 117 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT-----------DFRGYSTNPLGGVY 165

Query: 203 KYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCR--KYWLK-----GERKGKLE 255
              P     T +      ANG+ALS DE  + V E+   R  +  L+      +  G   
Sbjct: 166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225

Query: 256 TFAENLPGAPDNINLAPDGTFWIA 279
            +       PD+  +  D   ++A
Sbjct: 226 PYYFTGHEGPDSCCIDSDDNLYVA 249

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 65.0 bits (158), Expect = 5e-12
 Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 18/206 (8%)

Query: 81  PEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN 138
            E+ +   +G I+ T    G I  +  DG       ++ +   GL  T  G L+      
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNA 92

Query: 139 G-LHKVSEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK 196
             +  VS    +  +   +      F N +   SD       S    +       I   +
Sbjct: 93  DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWL-----IDVVQ 147

Query: 197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCR--KYWLKGERK-GK 253
           P G +    P    +   +    F     L R  +++ V  + K    +  +    K G+
Sbjct: 148 PSGSIWLEHPMLARSNSESV---FPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGE 204

Query: 254 LETFAENLPGAPDNINLAPDGTFWIA 279
            E F E      D+     +G  + A
Sbjct: 205 PEIFVE--QTNIDDFAFDVEGNLYGA 228

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 32/224 (14%), Positives = 65/224 (29%), Gaps = 36/224 (16%)

Query: 162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA 221
           F  ++  A DG+++ T             +       G+++   P  N     A      
Sbjct: 33  FLENLASAPDGTIFVT-------------NH----EVGEIVSITPDGNQQI-HATVEGKV 74

Query: 222 NGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWIA- 279
           +G+A + + D V    +          +  G +ET          N I    D  +  A 
Sbjct: 75  SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTAD 134

Query: 280 -------IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN 332
                  +I +      I     ++    +      +  +   G    +   E   ++R 
Sbjct: 135 SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRI 194

Query: 333 LVDPTGQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 367
            VD T +                  D   +LY  +   N + ++
Sbjct: 195 PVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRI 238

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 37/276 (13%)

Query: 74  GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGH 130
                      ++  +G ++ T      I R+ + G    +   +  +   G+T    G 
Sbjct: 52  LPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGD 111

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           +   +     + ++++DG      Y   +K  + + +   SD +L+FT + +        
Sbjct: 112 IWFTEMNGNRIGRITDDG--KIREYELPNKGSYPSFITLGSDNALWFTENQN-------- 161

Query: 190 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDED-YVVVCESWKCRKYWLK 247
                      + +   S +IT   +        G+    D+  + V     K  +    
Sbjct: 162 ---------NAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI--- 209

Query: 248 GERKGKLETFAENLPGA-PDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK 306
               G++  F    P A P  I        W    +  A ++  L S+ +I+        
Sbjct: 210 -TTSGEITEFKIPTPNARPHAITAGAGIDLWFT--EWGANKIGRLTSNNIIEEYPIQIKS 266

Query: 307 LFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLM 341
                I   G    I  A +   I +  +      M
Sbjct: 267 AEPHGICFDGET--IWFAMECDKIGK--LTLIKDNM 298

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 44/285 (15%), Positives = 90/285 (31%), Gaps = 47/285 (16%)

Query: 122 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 180
           G+T + +G + I  +    +  ++ DG      Y   +       +  +SDG ++FT ++
Sbjct: 19  GITVSDKGKVWITQHKANMISCINLDG--KITEYPLPTPDAKVMCLTISSDGEVWFTENA 76

Query: 181 S----KYLP----HEYCLDILEGKPHG-----------------QLLKYDPSSNITTLVA 215
           +    +        EY L   +  P+G                 ++ +      I     
Sbjct: 77  ANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYEL 136

Query: 216 DG-FYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGA-PDNINLAPD 273
                + + + L  D + +   E+        +    G +  F    P + P  I    D
Sbjct: 137 PNKGSYPSFITLGSD-NALWFTENQNNA--IGRITESGDITEFKIPTPASGPVGITKGND 193

Query: 274 GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--DGTIIR 331
              W    ++   ++  + +S  I       P      IT G G   +   E     I R
Sbjct: 194 DALWFV--EIIGNKIGRITTSGEITEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGR 250

Query: 332 NLVDPTGQLMSFVTS-------GLQVDNHLYVISLTSNFIGKVQL 369
             +     +  +          G+  D      ++  + IGK+ L
Sbjct: 251 --LTSNNIIEEYPIQIKSAEPHGICFDGETIWFAMECDKIGKLTL 293

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 33/219 (15%), Positives = 72/219 (32%), Gaps = 42/219 (19%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 222
             +  +  G ++ T   +                   +   +    IT   +        
Sbjct: 18  YGITVSDKGKVWITQHKA-----------------NMISCINLDGKITEYPLPTPDAKVM 60

Query: 223 GVALSRDED-YVVVCESWKCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAI 280
            + +S D + +     + K  +      +KG ++ +    P + P  I   P+G  W   
Sbjct: 61  CLTISSDGEVWFTENAANKIGRI----TKKGIIKEYTLPNPDSAPYGITEGPNGDIWFT- 115

Query: 281 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAE--DGTIIRNLVDPT 337
            +++  R+  +     I+         +  FITLG   A  +   E  +  I R  +  +
Sbjct: 116 -EMNGNRIGRITDDGKIREYELPNKGSYPSFITLGSDNA--LWFTENQNNAIGR--ITES 170

Query: 338 GQLMSFVTS-------GLQVD--NHLYVISLTSNFIGKV 367
           G +  F          G+     + L+ + +  N IG++
Sbjct: 171 GDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI 209

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 29/212 (13%), Positives = 65/212 (30%), Gaps = 28/212 (13%)

Query: 74  GEGSVNHPEDASMDKNGVIY-TATRDGWIKRL-QDGTWVNWKFIDSQTL-VGLTSTKEGH 130
                + P   +   NG I+ T      I +L  DGT   +   +  +    +T   +  
Sbjct: 99  LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNA 158

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           L   +N N  + +++  G      Y   +       +   +DG+L+F             
Sbjct: 159 LWFTENQNNSIGRITNTG--KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-------- 208

Query: 190 LDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCESWKCRKYWLKG 248
                     ++ +   +  I+   +       + +   ++   +   E    +    + 
Sbjct: 209 ---------NKIGRITTTGEISEYDIPTPNARPHAITAGKN-SEIWFTEWGANQ--IGRI 256

Query: 249 ERKGKLETFAENLPGA-PDNINLAPDGTFWIA 279
                ++ +      A P  I    DG+ W A
Sbjct: 257 TNDNTIQEYQLQTENAEPHGITFGKDGSVWFA 288

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 35/273 (12%), Positives = 80/273 (29%), Gaps = 67/273 (24%)

Query: 122 GLTSTKEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSS 180
           G+TS+++G +    +    +  + + G      +   +       ++ +S G ++FT + 
Sbjct: 24  GITSSEDGKVWFTQHKANKISSLDQSG--RIKEFEVPTPDAKVMCLIVSSLGDIWFTENG 81

Query: 181 SKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDED-YVVVCES 238
           +                  ++ K       T   +        G+    + D +      
Sbjct: 82  A-----------------NKIGKLSKKGGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNG 124

Query: 239 WKCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIA------IIKLDARRMKIL 291
            +  K        G +  +     G+ P  I L  D   W        I ++        
Sbjct: 125 DRIGKLT----ADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN------ 174

Query: 292 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTII-----RNLV---DPTGQLMSF 343
            + KL ++ L           T       I    DG +       N +     TG++  +
Sbjct: 175 -TGKLEEYPLP----------TNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEY 223

Query: 344 VT-------SGLQVD--NHLYVISLTSNFIGKV 367
                      +     + ++     +N IG++
Sbjct: 224 DIPTPNARPHAITAGKNSEIWFTEWGANQIGRI 256

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 40/217 (18%), Positives = 72/217 (33%), Gaps = 38/217 (17%)

Query: 164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFAN 222
             +  + DG ++FT   +                  ++   D S  I    V        
Sbjct: 23  YGITSSEDGKVWFTQHKA-----------------NKISSLDQSGRIKEFEVPTPDAKVM 65

Query: 223 GVALSRDED-YVVVCESWKCRKYWLKGERKGKLETFAENLPGA-PDNINLAPDGTFWIAI 280
            + +S   D +     + K  K      +KG    +    P + P  I    +G  W   
Sbjct: 66  CLIVSSLGDIWFTENGANKIGKL----SKKGGFTEYPLPQPDSGPYGITEGLNGDIWFT- 120

Query: 281 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGG-GAHLIHVAEDGTIIRNLVDPTGQ 339
            +L+  R+  L +   I          +  FITLG   A      ++ +I R  +  TG+
Sbjct: 121 -QLNGDRIGKLTADGTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGR--ITNTGK 177

Query: 340 LMSFVTS-------GLQVDN--HLYVISLTSNFIGKV 367
           L  +          G+   N   L+ + +  N IG++
Sbjct: 178 LEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI 214

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 29/178 (16%)

Query: 72  KVGEGSVNHPEDASMDKNGVIYTA-TRDGWIKRL-QDGTWVNWKFIDSQTL---VGLTST 126
            +    +N+PE  ++D  G +Y A   +  + +L           +    L    G+   
Sbjct: 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ--TVLPFTGLNDPDGVAVD 158

Query: 127 KEGHLIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP 185
             G++ + D  N  + K+  +   N    +  + +     +     G++Y T  ++    
Sbjct: 159 NSGNVYVTDTDNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT---- 212

Query: 186 HEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWKCR 242
                         Q++K    S  +T++   G      VA+  D   V V +    R
Sbjct: 213 -------------NQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSD-RTVYVADRGNDR 256

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 29/213 (13%)

Query: 73  VGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQ--TLVGLTSTKEGH 130
           +    +  P+  ++D  G +Y    +  +  L  G+               GL    +G 
Sbjct: 61  LPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGA 120

Query: 131 LIICDNANG-LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
           + + D  N  + K++        + +  + L   + V   + G++Y T +          
Sbjct: 121 VYVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD--------- 169

Query: 190 LDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWKCR--KYWL 246
                   + +++K +  SN   ++         G+A+      V V E    +  K   
Sbjct: 170 --------NNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKLLA 220

Query: 247 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA 279
                  L     N P A   + +  D T ++A
Sbjct: 221 GSTTSTVLPFTGLNTPLA---VAVDSDRTVYVA 250

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 37/225 (16%), Positives = 72/225 (32%), Gaps = 36/225 (16%)

Query: 74  GEGSVNHPEDASMDKNGVIYTATRD--GWIKRLQDGTWVNWKFIDSQ--TLVGLTSTKEG 129
           G      P   ++D  G +Y  +    G + +L  G+        +      GL     G
Sbjct: 19  GIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG 78

Query: 130 HLIICDNANGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC 189
            + + D  N    V+     N  + +    L +   +   + G++Y              
Sbjct: 79  TVYVTDFNN--RVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVA------------ 124

Query: 190 LDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVCESWKCR--KYWL 246
                 + + +++K    S   T++   G    +GVA+      V V ++   R  K   
Sbjct: 125 -----DRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNS-GNVYVTDTDNNRVVKLEA 178

Query: 247 KGERKGKLETFAENLPGAPDNINLAPDGTFWIA------IIKLDA 285
           +                AP  I +   GT ++       ++KL A
Sbjct: 179 ESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA 220

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 33/177 (18%)

Query: 74  GEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ----DGTWVNWKFIDSQTLV---GLTST 126
            +  + +P   ++ +N      T      ++Q     G +V  +   +  L    G+T  
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFV--RKFGATILQHPRGVTVD 129

Query: 127 KEGHLIICDNANG-LHKVSEDGVENFLSYVNGSK-LRFANDVVEASDGSLYFTVSSSKYL 184
            +G +I+ +     +    ++G  N L     SK L F N VV      ++  +S ++  
Sbjct: 130 NKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIF--ISDNR-- 183

Query: 185 PHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADG-FYFANGVALSRDEDYVVVCESW 239
                           +  ++     +  +  +G   +  GV ++ +   +++ ++ 
Sbjct: 184 -------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSN-GEILIADNH 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	100.0
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.95
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.93
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.92
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.92
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.89
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.89
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.88
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.87
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.87
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.86
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.86
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.85
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.85
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.84
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.84
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.8
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.79
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.79
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.76
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.76
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.76
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.75
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.75
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.74
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.74
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.72
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.72
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.7
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.7
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.7
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.7
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.68
3ott_A	758	Two-component system sensor histidine kinase; beta	99.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.67
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.66
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.66
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.66
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.66
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.65
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.65
3ott_A	758	Two-component system sensor histidine kinase; beta	99.64
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.64
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.64
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.61
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.6
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.58
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.58
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.58
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.56
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.56
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.55
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.52
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.51
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.5
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.46
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.45
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.45
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.41
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.41
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.4
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.4
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.39
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.38
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.37
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.34
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.32
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.31
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.28
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.28
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.28
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.21
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.19
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.19
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.18
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.17
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.14
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.14
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.14
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.14
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.12
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.1
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.1
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.09
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.08
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.06
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.05
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.01
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.01
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.96
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.94
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.93
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.93
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.93
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.92
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.9
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.88
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.84
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.83
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.83
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.78
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.77
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.77
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.76
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.75
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.74
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.74
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.74
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.73
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.72
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.72
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.71
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.7
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.69
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.68
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.67
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.67
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.67
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.67
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.66
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.65
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.65
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.64
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.63
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.63
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.62
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.62
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.61
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.61
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.6
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.6
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.6
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.59
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.58
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	98.58
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.58
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.57
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.56
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.56
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.55
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.54
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.54
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.51
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.5
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.5
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.48
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.48
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.47
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.47
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.47
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.46
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.46
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.46
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.46
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.46
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.46
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.45
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.45
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.44
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.43
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.42
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.42
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.41
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.4
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.4
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.39
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.38
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.38
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.38
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.37
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.37
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.37
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.35
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.34
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	98.34
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.32
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.32
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.32
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.31
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.31
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.31
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.3
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.3
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.3
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.29
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.26
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.26
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.25
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.25
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.24
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.24
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.22
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.22
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.21
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.19
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.18
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.16
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.16
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.16
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.15
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.14
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.12
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.12
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.1
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.1
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.1
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.09
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.08
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.08
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.08
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.08
3jro_A	753	Fusion protein of protein transport protein SEC13	98.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.06
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.05
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.04
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.03
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.03
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.02
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.01
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	97.99
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	97.95
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.94
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.94
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.92
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.91
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	97.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	97.9
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	97.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.88
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.85
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.85
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.82
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.8
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.75
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	97.7
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.67
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.66
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.66
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.65
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	97.62
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.61
3jro_A	753	Fusion protein of protein transport protein SEC13	97.6
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.59
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.59
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.56
2pm7_B	297	Protein transport protein SEC13, protein transport	97.56
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.55
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.54
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.52
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	97.51
2pm7_B	297	Protein transport protein SEC13, protein transport	97.5
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.46
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	97.42
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.41
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.37
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.35
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.32
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.24
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.21
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.17
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.17
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.17
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.15
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.14
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.14
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.02
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	97.02
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	96.72
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.7
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	96.58
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	96.57
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.46
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	96.31
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.29
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	96.08
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	95.92
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	95.88
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	95.87
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	95.55
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	95.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	95.35
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	94.39
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.16
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	93.43
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.34
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	93.03
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.41
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	89.33
3a0f_A	763	Xyloglucanase; beta-propeller, hydrolase; 2.50A {G	89.27
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	88.27
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	85.37
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	84.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	83.83
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	82.3

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=100.00  E-value=1.6e-32  Score=253.74  Aligned_cols=268  Identities=24%  Similarity=0.386  Sum_probs=213.8

Q ss_pred             CCcCCCcceEEcCCCc-EEEEecCCeEEEEe-C-CeEEEEEec--------------------CCCceeceEEcC-CCcE
Q 017520           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-D-GTWVNWKFI--------------------DSQTLVGLTSTK-EGHL  131 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~-~-g~~~~~~~~--------------------~~~p~~gl~~d~-~G~L  131 (370)
                      +.+..||++++|++|+ +|++..+++|++++ + ++++.+...                    .+.|. ||++++ +|+|
T Consensus        16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g~l   94 (322)
T 2fp8_A           16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNNQL   94 (322)
T ss_dssp             CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTTEE
T ss_pred             CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCCcE
Confidence            5578999999999998 88888899999999 4 467666531                    24689 999996 8999


Q ss_pred             EEEeCCCceEEEcCC-C-eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC
Q 017520          132 IICDNANGLHKVSED-G-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (370)
Q Consensus       132 ~v~~~~~gi~~~~~~-g-~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  208 (370)
                      ||++..+++++++.+ + ++.+.....+.++..++++++|+ +|++||++....++...+...+.+....++|+++|+++
T Consensus        95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~  174 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST  174 (322)
T ss_dssp             EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred             EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence            999988889999954 5 66665554555677899999999 99999999764444443333344445668999999998


Q ss_pred             CeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchh
Q 017520          209 NITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDAR  286 (370)
Q Consensus       209 ~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~  286 (370)
                      ++++.+...+..|+|+++++||+.+|++++..  |++|++++...++.+.+.. .++ |+++++|++|++||++...++.
T Consensus       175 ~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          175 KETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             TEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             CEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecCcccc
Confidence            88887777788999999999999999999865  9999998765566666653 566 9999999999999999763221


Q ss_pred             HHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEE
Q 017520          287 RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK  366 (370)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~  366 (370)
                      .                 |       .....+.|+++|++|+++..+..++|..+..++.+...+++||+++..+++|.+
T Consensus       253 ~-----------------~-------~~~~~~~v~~~d~~G~~~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~  308 (322)
T 2fp8_A          253 N-----------------M-------HGRVDPKGIKFDEFGNILEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGI  308 (322)
T ss_dssp             S-----------------T-------TSCEEEEEEEECTTSCEEEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEE
T ss_pred             c-----------------c-------cCCCccEEEEECCCCCEEEEEECCCCCccccceEEEEeCCEEEEeecCCCceEE
Confidence            1                 0       012246799999999999999998887667788888889999999999999999


Q ss_pred             EeCC
Q 017520          367 VQLS  370 (370)
Q Consensus       367 ~~~~  370 (370)
                      ++++
T Consensus       309 ~~~~  312 (322)
T 2fp8_A          309 LVYD  312 (322)
T ss_dssp             EEC-
T ss_pred             Eecc
Confidence            9874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.96  E-value=3.4e-27  Score=218.63  Aligned_cols=270  Identities=20%  Similarity=0.289  Sum_probs=197.7

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEe-------------cCCeEEEEe-C---CeEEEEEec-------CCCceeceE
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTAT-------------RDGWIKRLQ-D---GTWVNWKFI-------DSQTLVGLT  124 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~-------------~~g~I~~~~-~---g~~~~~~~~-------~~~p~~gl~  124 (370)
                      ..+.+. +...+||+|+++++|.+|+++             ..|+|++++ +   ++.+.+...       ..+|+ ||.
T Consensus        41 ~C~~i~-~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~  118 (355)
T 3sre_A           41 NCNLVK-GIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GIS  118 (355)
T ss_dssp             CEEECT-TCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEE
T ss_pred             CCEEeC-CCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeE
Confidence            455554 434699999999999999997             689999999 3   445444332       24899 999


Q ss_pred             EcC--CC--cEEEEeCCC-----ceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce---ec
Q 017520          125 STK--EG--HLIICDNAN-----GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC---LD  191 (370)
Q Consensus       125 ~d~--~G--~L~v~~~~~-----gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~---~~  191 (370)
                      +.+  +|  +|||++...     +++++++++ ...+.....+.+++.+|+++++++|++|+++..  | +.+..   .+
T Consensus       119 ~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~--~-ftd~~~~~~e  195 (355)
T 3sre_A          119 TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDH--Y-FIDPYLKSWE  195 (355)
T ss_dssp             EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESC--S-CSSHHHHHHH
T ss_pred             EEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCc--E-eCCcccccch
Confidence            854  45  599998764     388888655 555666667788999999999999999999763  1 11100   11


Q ss_pred             ccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC-CCCceeeeccCCCCCCCce
Q 017520          192 ILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE-RKGKLETFAENLPGAPDNI  268 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~-~~~~~~~~~~~~~g~p~~i  268 (370)
                      ..+....++||++|+.  +++.+..++..|||+++++|++.+|++++..  |++|+++.. +.+..+.+  ..++.|||+
T Consensus       196 ~~~~~~~g~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi  271 (355)
T 3sre_A          196 MHLGLAWSFVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNI  271 (355)
T ss_dssp             HHTTCCCEEEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEE
T ss_pred             hhccCCccEEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceE
Confidence            1223467899999984  6777888999999999999999999999876  999999743 34444455  357889999


Q ss_pred             eECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC----CCCcEEEEEeCCCCCcccc
Q 017520          269 NLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA----EDGTIIRNLVDPTGQLMSF  343 (370)
Q Consensus       269 ~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~----~~g~~~~~~~~~~g~~~~~  343 (370)
                      ++|+ +|++|+++..+...++             .--|..       .+-..+.++.    +++++.+.|.+ +|..+..
T Consensus       272 ~vD~e~G~lwva~~~~g~~v~-------------~~~P~~-------~~~s~v~rI~~~~~~~~~v~~v~~d-dG~~l~~  330 (355)
T 3sre_A          272 SVDPVTGDLWVGCHPNGMRIF-------------FYDAEN-------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQG  330 (355)
T ss_dssp             EECTTTCCEEEEEESCHHHHH-------------SCCTTS-------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSCCS
T ss_pred             EEeCCCCcEEEEecCCceEEE-------------EECCCC-------CCCCEEEEEEccCCCCcEEEEEEEc-CCCEEEe
Confidence            9999 5999998764322111             111221       1124466665    57888999988 8988889


Q ss_pred             ceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          344 VTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       344 ~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                      .|.+...+|+|||||+..+ +..|+|
T Consensus       331 ~T~a~~~~g~L~iGsv~~~-~l~c~~  355 (355)
T 3sre_A          331 STVAAVYKGKLLIGTVFHK-ALYCDL  355 (355)
T ss_dssp             EEEEEEETTEEEEEESSSC-EEEEEC
T ss_pred             eEEEEEECCEEEEEEcCCC-ceeccC
Confidence            9999999999999999998 445543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.6e-25  Score=205.12  Aligned_cols=253  Identities=16%  Similarity=0.229  Sum_probs=192.7

Q ss_pred             CceEecCCCcCCCcceEEcCCCc-EEEEe-cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGV-IYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS  144 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~-l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~  144 (370)
                      ..+++..+ +.-+|+.+++++|+ ||+.+ .+++|++++ +|+.+.+....+.+. +++++++|+||+++.. .+|.+++
T Consensus        36 ~~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           36 RLLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRLVHCEHGRRAITRSD  113 (305)
T ss_dssp             CCEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCEEEEETTTTEEEEEC
T ss_pred             ceEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCEEEEECCCCEEEEEC
Confidence            44566665 56799999999887 65555 788999999 888888877778899 9999999999999876 6799999


Q ss_pred             CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce--ecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520          145 EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (370)
Q Consensus       145 ~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p  221 (370)
                      .+| ++.+.....+.+++.+++++++++|++||+|..  |+.....  .........+.|+++|+++++++.+. .+..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            668 777766556666788999999999999999853  1110000  00001123478999999888887776 77889


Q ss_pred             cceEEccCCCEEEEEeCC------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcc
Q 017520          222 NGVALSRDEDYVVVCESW------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSS  294 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~  294 (370)
                      +|+++++|++.||++++.      + |++|++++......+.+.....+.|+++++|++|++|+++..            
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~~~------------  258 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSSGT------------  258 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECCSS------------
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEecCC------------
Confidence            999999999999999886      4 999998764333344554445678999999999999999843            


Q ss_pred             hhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE--ECCEEEEEeCCCCeEEEEeC
Q 017520          295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~~gs~~~~~i~~~~~  369 (370)
                                              .|.+++++|+.+..+..+.+     ++.+..  .+++||+++..  .|.++++
T Consensus       259 ------------------------gv~~~~~~g~~~~~~~~~~~-----~~~~~f~~d~~~L~it~~~--~l~~~~~  304 (305)
T 3dr2_A          259 ------------------------GVCVFDSDGQLLGHIPTPGT-----ASNCTFDQAQQRLFITGGP--CLWMLPL  304 (305)
T ss_dssp             ------------------------EEEEECTTSCEEEEEECSSC-----CCEEEECTTSCEEEEEETT--EEEEEEC
T ss_pred             ------------------------cEEEECCCCCEEEEEECCCc-----eeEEEEeCCCCEEEEEcCC--eEEEEEC
Confidence                                    38999999999999987653     334444  34689999964  6777765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.93  E-value=1.1e-23  Score=191.58  Aligned_cols=250  Identities=20%  Similarity=0.264  Sum_probs=184.1

Q ss_pred             ceEecCCCcCCCcceEEcCCCc-EE-EEecCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEcC
Q 017520           70 FIKVGEGSVNHPEDASMDKNGV-IY-TATRDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE  145 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~-l~-v~~~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~  145 (370)
                      .+.+..+ +..||++++|++|+ || ++..+++|++++ ++..+.+....+.|. +++++++|+||+++.. .+|++++.
T Consensus        20 ~~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcEEEEecCCCeEEEEcC
Confidence            3555544 67899999999998 55 555788999999 444777766677789 9999999999999875 68999994


Q ss_pred             -CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce--ecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520          146 -DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC--LDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (370)
Q Consensus       146 -~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~--~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p  221 (370)
                       +| ++.+.....+.++..++++++|++|++|++|+.  ++.....  .........++|++++++ ++.+.+......|
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~--~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPT--YGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECS--HHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCc--cccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence             78 666654444555678999999999999999752  1100000  000011234689999998 7777777888899


Q ss_pred             cceEEccCCCEEEEEeCCc--EEEEEeCC-CCC-CceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhH
Q 017520          222 NGVALSRDEDYVVVCESWK--CRKYWLKG-ERK-GKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI  297 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~--l~~~~~~~-~~~-~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  297 (370)
                      +++++++||+.+ ++++..  |++|+++. .+. ...+.+ ....+.|+++++|++|++|+++ .+              
T Consensus       175 ~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~-~~--------------  237 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA-GD--------------  237 (296)
T ss_dssp             EEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE-TT--------------
T ss_pred             ccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc-CC--------------
Confidence            999999999977 888764  99999862 222 223444 4455689999999999999999 32              


Q ss_pred             HHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--C-CEEEEEeCCCCeEEEEeC
Q 017520          298 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~~gs~~~~~i~~~~~  369 (370)
                                           .|.+++++|+.+..+..+.+     ++.+...  + ++||+++..  .|.++++
T Consensus       238 ---------------------~v~~~~~~g~~~~~~~~~~~-----~~~~~f~~~d~~~L~v~t~~--~l~~~~~  284 (296)
T 3e5z_A          238 ---------------------GVHVLTPDGDELGRVLTPQT-----TSNLCFGGPEGRTLYMTVST--EFWSIET  284 (296)
T ss_dssp             ---------------------EEEEECTTSCEEEEEECSSC-----CCEEEEESTTSCEEEEEETT--EEEEEEC
T ss_pred             ---------------------eEEEECCCCCEEEEEECCCC-----ceeEEEECCCCCEEEEEcCC--eEEEEEc
Confidence                                 48999999999999987664     3444442  3 579999864  6777765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.92  E-value=4.2e-23  Score=188.58  Aligned_cols=258  Identities=21%  Similarity=0.301  Sum_probs=184.6

Q ss_pred             ceEecCCCcCCCcceEEcCCCcEEEE--------ecCCeEEEEe--CCeEEEEEe-----cCCCceeceEEcCC-CcEEE
Q 017520           70 FIKVGEGSVNHPEDASMDKNGVIYTA--------TRDGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKE-GHLII  133 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~l~v~--------~~~g~I~~~~--~g~~~~~~~-----~~~~p~~gl~~d~~-G~L~v  133 (370)
                      .+.+..+ +..|+++++|++|++|++        ..+++|++++  ++++..+..     ....|. +++++++ |+||+
T Consensus        10 ~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l~v   87 (314)
T 1pjx_A           10 FTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFV   87 (314)
T ss_dssp             CEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEE
T ss_pred             Hhhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcEEE
Confidence            3445544 789999999999999999        4778999999  677766644     335688 9999999 99999


Q ss_pred             EeCCCceEEEcCCC-eEEE-EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          134 CDNANGLHKVSEDG-VENF-LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       134 ~~~~~gi~~~~~~g-~~~~-~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                      ++...+|++++.+| ++.+ .....+.+...++++++|++|++|+++........++.  .......++|+++|++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYT--RSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCC--BTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccccccc--ccccCCCCeEEEECCC-CCE
Confidence            99777999999448 6544 33223334467899999999999999864110000000  0011234789999987 666


Q ss_pred             EEEecCCCCccceEEc----cCCCEEEEEeCCc--EEEEEeCC-CCCCceeeecc--CCC-CCCCceeECCCCCEEEEEe
Q 017520          212 TLVADGFYFANGVALS----RDEDYVVVCESWK--CRKYWLKG-ERKGKLETFAE--NLP-GAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       212 ~~~~~~~~~p~gi~~~----~dg~~l~v~~~~~--l~~~~~~~-~~~~~~~~~~~--~~~-g~p~~i~~d~~G~lwv~~~  281 (370)
                      +.+......|++++++    +|++.+|+++...  |++|++++ .+....+.+..  ... +.|+++++|++|++|+++.
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~  244 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc
Confidence            6666666789999999    9998899998754  99999762 22222222221  111 5689999999999999986


Q ss_pred             cCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCccccceeEEEE-CCE-EEEEe
Q 017520          282 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVIS  358 (370)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~~gs  358 (370)
                      ..                                  +.|.++|++ |+.+..+..+.    ..++.+... +|+ ||+++
T Consensus       245 ~~----------------------------------~~i~~~d~~~g~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~  286 (314)
T 1pjx_A          245 GS----------------------------------SHIEVFGPDGGQPKMRIRCPF----EKPSNLHFKPQTKTIFVTE  286 (314)
T ss_dssp             TT----------------------------------TEEEEECTTCBSCSEEEECSS----SCEEEEEECTTSSEEEEEE
T ss_pred             CC----------------------------------CEEEEEcCCCCcEeEEEeCCC----CCceeEEECCCCCEEEEEe
Confidence            54                                  468999998 88887776543    245555553 454 99999


Q ss_pred             CCCCeEEEEeCC
Q 017520          359 LTSNFIGKVQLS  370 (370)
Q Consensus       359 ~~~~~i~~~~~~  370 (370)
                      ...+.|.+++++
T Consensus       287 ~~~~~l~~~~~~  298 (314)
T 1pjx_A          287 HENNAVWKFEWQ  298 (314)
T ss_dssp             TTTTEEEEEECS
T ss_pred             CCCCeEEEEeCC
Confidence            998999998863

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.92  E-value=1.4e-22  Score=184.73  Aligned_cols=240  Identities=13%  Similarity=0.133  Sum_probs=177.1

Q ss_pred             cCCCcCCCcceEEcC-CCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-
Q 017520           74 GEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-  147 (370)
Q Consensus        74 ~~~~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-  147 (370)
                      ......-+|+.+.++ ++.||+.+ .+++|++++  +++...+ .....+. +++++++|+||++. ..+|++++ .++ 
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~~~-~i~~~~dG~l~v~~-~~~l~~~d~~~g~   84 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAPVS-SVALRQSGGYVATI-GTKFCALNWKEQS   84 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE-ECSSCEE-EEEEBTTSSEEEEE-TTEEEEEETTTTE
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE-eCCCceE-EEEECCCCCEEEEE-CCeEEEEECCCCc
Confidence            333356789999997 67888888 678999999  4555544 3456788 99999999999987 57999999 567 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEc
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS  227 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~  227 (370)
                      ++.+.....+.+...++++++|++|++|+++......      ........+.|++++++ ++...+...+..|+|++++
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~s  157 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWS  157 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEEC
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccceEEc
Confidence            6666554344456678999999999999997531100      00011245789999987 5566666777889999999


Q ss_pred             cCCCEEEEEeCCc--EEEEEeC--CCCCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHH
Q 017520          228 RDEDYVVVCESWK--CRKYWLK--GERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       228 ~dg~~l~v~~~~~--l~~~~~~--~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      +|++.+|++++..  |++|+++  +......+.+..  ...+.|+++++|++|++|+++..+                  
T Consensus       158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~------------------  219 (297)
T 3g4e_A          158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNG------------------  219 (297)
T ss_dssp             TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETT------------------
T ss_pred             CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCC------------------
Confidence            9999999999865  9999874  222222333432  223579999999999999999865                  


Q ss_pred             HhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCccccceeEEEEC---CEEEEEeCCC
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLTS  361 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~~  361 (370)
                                      +.|.++|++ |+++..+..+..    .++.+.+.+   ++||+++...
T Consensus       220 ----------------~~v~~~d~~tG~~~~~i~~p~~----~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          220 ----------------GRVIRLDPVTGKRLQTVKLPVD----KTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             ----------------TEEEEECTTTCCEEEEEECSSS----BEEEEEEESGGGCEEEEEEBCT
T ss_pred             ----------------CEEEEEcCCCceEEEEEECCCC----CceEEEEeCCCCCEEEEEcCCc
Confidence                            469999997 999998877642    356666652   6899998754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.89  E-value=9e-21  Score=173.61  Aligned_cols=222  Identities=20%  Similarity=0.262  Sum_probs=166.1

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-Cc--eEEEc-CCC-eEEE
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NG--LHKVS-EDG-VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~g--i~~~~-~~g-~~~~  151 (370)
                      ..||++++|++|+||+++ .+++|++++ +++...+....+.|. +++++++|+|||++.. ++  +++++ ++| ++.+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            579999999999999999 789999999 777666666667899 9999999999999865 23  88888 677 6655


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-----------ecCCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-----------ADGFYF  220 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-----------~~~~~~  220 (370)
                      ... ..  ..++++++..+++++|+++.                 ..+.||++|+.++..++.           ...+..
T Consensus       111 ~~~-~~--~~~~~g~~~~~~~~~~v~d~-----------------~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~  170 (306)
T 2p4o_A          111 LTL-PD--AIFLNGITPLSDTQYLTADS-----------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA  170 (306)
T ss_dssp             EEC-TT--CSCEEEEEESSSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred             EeC-CC--ccccCcccccCCCcEEEEEC-----------------CCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence            443 22  34678888888888999985                 357999999876543322           134567


Q ss_pred             ccceEEccCCCEEEEEeCCc--EEEEEeCC-CCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhH
Q 017520          221 ANGVALSRDEDYVVVCESWK--CRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI  297 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~~~--l~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  297 (370)
                      |+|+  ++|++.+|++++..  |++|++++ .+.+..+.+...  ..|+++++|++|++|++....              
T Consensus       171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~--------------  232 (306)
T 2p4o_A          171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIY--------------  232 (306)
T ss_dssp             EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTT--------------
T ss_pred             CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCC--------------
Confidence            8998  88898999999876  99999875 334444444322  469999999999999998764              


Q ss_pred             HHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE----C-CEEEEEeCCC
Q 017520          298 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV----D-NHLYVISLTS  361 (370)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~----~-g~L~~gs~~~  361 (370)
                                          +.|.+++++|+......-+.+  ....+.+...    + ++||+.+..+
T Consensus       233 --------------------~~V~~~~~~G~~~~~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          233 --------------------NSVVRIAPDRSTTIIAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             --------------------CCEEEECTTCCEEEEECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             --------------------CeEEEECCCCCEEEEeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence                                458999999987553322222  2345666654    3 7999998753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.89  E-value=2.8e-20  Score=167.90  Aligned_cols=233  Identities=15%  Similarity=0.258  Sum_probs=170.2

Q ss_pred             CCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe-CCeEE-EEEec------CCCceeceEE-cCCCcEEEEeC--CCceEE
Q 017520           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWV-NWKFI------DSQTLVGLTS-TKEGHLIICDN--ANGLHK  142 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~-~~~~~------~~~p~~gl~~-d~~G~L~v~~~--~~gi~~  142 (370)
                      .+.+..|.+|++|++|++|+++ .+++|.+++ +++.. .+...      ...|. ++++ +++|+||+++.  ...|.+
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeEEEEcCCCCCEEEE
Confidence            3567889999999999999997 678999999 76543 33221      23688 9999 58999999985  467889


Q ss_pred             EcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCC
Q 017520          143 VSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGF  218 (370)
Q Consensus       143 ~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~  218 (370)
                      ++++|  +..+    .......+++++++++|++|+++.                 ..++|+++|+++.....+.  ..+
T Consensus       105 ~d~~g~~~~~~----~~~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~g~~~~~~~~~~~~  163 (286)
T 1q7f_A          105 YNQYGQFVRKF----GATILQHPRGVTVDNKGRIIVVEC-----------------KVMRVIIFDQNGNVLHKFGCSKHL  163 (286)
T ss_dssp             ECTTSCEEEEE----CTTTCSCEEEEEECTTSCEEEEET-----------------TTTEEEEECTTSCEEEEEECTTTC
T ss_pred             ECCCCcEEEEe----cCccCCCceEEEEeCCCCEEEEEC-----------------CCCEEEEEcCCCCEEEEeCCCCcc
Confidence            98777  3333    112245789999999999999976                 3468999998755555443  345


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCEEEEEecCchhHHHhhhcch
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  295 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  295 (370)
                      ..|++++++++|+ +|+++...  |.+|+.++.   ....+... ....|.++++|++|++|++....            
T Consensus       164 ~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~---~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~------------  227 (286)
T 1q7f_A          164 EFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ---YLRQIGGEGITNYPIGVGINSNGEILIADNHN------------  227 (286)
T ss_dssp             SSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC---EEEEESCTTTSCSEEEEEECTTCCEEEEECSS------------
T ss_pred             CCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC---EEEEEccCCccCCCcEEEECCCCCEEEEeCCC------------
Confidence            6799999999997 99998754  999997653   22233211 12468999999999999998654            


Q ss_pred             hHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEEeC
Q 017520          296 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~~  369 (370)
                                           .+.|..++++|+.+..+....+.  ..+..+.. .+|+||+++. .+.|.++++
T Consensus       228 ---------------------~~~i~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~g~l~vs~~-~~~v~v~~~  278 (286)
T 1q7f_A          228 ---------------------NFNLTIFTQDGQLISALESKVKH--AQCFDVALMDDGSVVLASK-DYRLYIYRY  278 (286)
T ss_dssp             ---------------------SCEEEEECTTSCEEEEEEESSCC--SCEEEEEEETTTEEEEEET-TTEEEEEEC
T ss_pred             ---------------------CEEEEEECCCCCEEEEEcccCCC--CcceeEEECCCCcEEEECC-CCeEEEEEc
Confidence                                 12589999999999888654321  22344444 4699999975 678888775

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.88  E-value=1.6e-20  Score=180.09  Aligned_cols=237  Identities=13%  Similarity=0.096  Sum_probs=175.4

Q ss_pred             CcCCCcceEEcCC---CcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-----CceEEEcCC
Q 017520           77 SVNHPEDASMDKN---GVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSED  146 (370)
Q Consensus        77 ~~~~P~~i~~d~~---G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-----~gi~~~~~~  146 (370)
                      .|..|++|++|++   |+||+++..++|++++  ++++..+......|. +|+++++|+|||++..     .+++.++++
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~lyVad~~~~~~~~gv~~~~~~  215 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDMVVVDDQSSDTNTGIYLFTRA  215 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence            6789999999974   9999999658999999  788888776677899 9999999999999963     357777743


Q ss_pred             C-eE--EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEec--CCC
Q 017520          147 G-VE--NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVAD--GFY  219 (370)
Q Consensus       147 g-~~--~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~--~~~  219 (370)
                      + +.  ....     .+..|+++++|+ +|+|||++.                 .+++|+++|++++.+ +.+..  ...
T Consensus       216 ~~~~~~~~~~-----~~~~P~giavd~~~G~lyv~d~-----------------~~~~V~~~d~~~g~~~~~~~~~~~~~  273 (433)
T 4hw6_A          216 SGFTERLSLC-----NARGAKTCAVHPQNGKIYYTRY-----------------HHAMISSYDPATGTLTEEEVMMDTKG  273 (433)
T ss_dssp             GTTCCEEEEE-----ECSSBCCCEECTTTCCEEECBT-----------------TCSEEEEECTTTCCEEEEEEECSCCS
T ss_pred             CCeecccccc-----ccCCCCEEEEeCCCCeEEEEEC-----------------CCCEEEEEECCCCeEEEEEeccCCCC
Confidence            3 22  1111     256899999999 899999986                 357899999987766 33322  233


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccC--C------------CCCCCceeE---------CC
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAEN--L------------PGAPDNINL---------AP  272 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~--~------------~g~p~~i~~---------d~  272 (370)
                      .+.+++++++|+.||+++..+  |++++.++.  .......+...  .            -..|.++++         |.
T Consensus       274 ~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~  353 (433)
T 4hw6_A          274 SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEED  353 (433)
T ss_dssp             SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSC
T ss_pred             CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCC
Confidence            456799999999999999876  999987642  22222222211  1            124778999         99


Q ss_pred             CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCC--------CC-----C
Q 017520          273 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----Q  339 (370)
Q Consensus       273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~--------~g-----~  339 (370)
                      +|+|||+...+                                  ..|.+++++|++.......        +|     .
T Consensus       354 ~g~lyvaD~~n----------------------------------~~I~~~~~~G~v~t~~G~g~~~~~G~~dG~~~~~~  399 (433)
T 4hw6_A          354 EYDFYFCDRDS----------------------------------HTVRVLTPEGRVTTYAGRGNSREWGYVDGELRSQA  399 (433)
T ss_dssp             CEEEEEEETTT----------------------------------TEEEEECTTSEEEEEECCCTTCSSCCBCEETTTTC
T ss_pred             CCcEEEEECCC----------------------------------CEEEEECCCCCEEEEEeCCCCCccccCCCcccccc
Confidence            99999998765                                  4688999999766655321        12     1


Q ss_pred             ccccceeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 017520          340 LMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       340 ~~~~~t~~~~~--~g~L~~gs~~~~~i~~~~~~  370 (370)
                      .++....+...  +|+||++...+++|.++.++
T Consensus       400 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          400 LFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             BCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            24445666665  69999999999999999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.88  E-value=2.4e-20  Score=166.57  Aligned_cols=228  Identities=17%  Similarity=0.210  Sum_probs=164.0

Q ss_pred             CCcceEEcCCCcEEE-Ee-cCCeEEEEe-CC-eEEEEEe-cCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEE
Q 017520           80 HPEDASMDKNGVIYT-AT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v-~~-~~g~I~~~~-~g-~~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~  152 (370)
                      .|++|++|++|++|+ ++ .+++|++++ ++ ....+.. ....|. +++++++|+||+++..++|++++.++  ...+ 
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~-  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL-  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC-
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCEEEEcCCCEEEEEeCCCceEeee-
Confidence            999999999999999 85 678999999 33 3332222 235688 99999999999998766799999655  3322 


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEccCCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDED  231 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg~  231 (370)
                         ....+..+++++++++|++|+++.                 ..++|++++..+...... ...+..|++++++++|+
T Consensus       103 ---~~~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          103 ---PFDGLNYPEGLAVDTQGAVYVADR-----------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             ---CCCSCSSEEEEEECTTCCEEEEEG-----------------GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             ---ecCCcCCCcceEECCCCCEEEEEC-----------------CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence               112235788999999999999975                 346899998765443332 23456899999999998


Q ss_pred             EEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccc
Q 017520          232 YVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  309 (370)
Q Consensus       232 ~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (370)
                       +|+++...  |.+|+.++..   ...........|.++++|++|++|++....                          
T Consensus       163 -l~v~~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~--------------------------  212 (270)
T 1rwi_B          163 -VYVTDTDNNRVVKLEAESNN---QVVLPFTDITAPWGIAVDEAGTVYVTEHNT--------------------------  212 (270)
T ss_dssp             -EEEEEGGGTEEEEECTTTCC---EEECCCSSCCSEEEEEECTTCCEEEEETTT--------------------------
T ss_pred             -EEEEECCCCEEEEEecCCCc---eEeecccCCCCceEEEECCCCCEEEEECCC--------------------------
Confidence             99998754  9999976542   111111111458899999999999998654                          


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeCC
Q 017520          310 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       310 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~~  370 (370)
                              +.|.+++++++....+.. .+  ...+..+... +|+||+++..++.|.+++++
T Consensus       213 --------~~v~~~~~~~~~~~~~~~-~~--~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          213 --------NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             --------SCEEEECTTCSCCEECCC-CS--CSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             --------CcEEEEcCCCCcceeecc-CC--CCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence                    348999998876654322 22  2345566554 58999999999999999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.87  E-value=4.9e-20  Score=169.87  Aligned_cols=243  Identities=19%  Similarity=0.265  Sum_probs=173.0

Q ss_pred             cCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEE-ecCCCceeceEEcCCCcEEEEeCCC-----ceEEEcC-CC
Q 017520           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNAN-----GLHKVSE-DG  147 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~~~~~-----gi~~~~~-~g  147 (370)
                      ...|+++++|++|+||+++ .+++|++++  ++++..+. .....|. +++++++|++|+++...     +|++++. ++
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            5679999999999999865 678999999  56766654 3456788 99999999999998654     7999994 44


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~  226 (370)
                       .+.+....  .....++++++|++|++|+++....           .....++|+++|+++++.+.+......++++++
T Consensus       123 ~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~  189 (333)
T 2dg1_A          123 NLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIAL  189 (333)
T ss_dssp             SCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEE
T ss_pred             EEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceEE
Confidence             54332211  1235788999999999999975210           011357899999987777666666667999999


Q ss_pred             ccCCCEEEEEeCCc--EEEEEeCCC--CCCce--eeeccCCC--CCCCceeECCCCCEEEEEecCchhHHHhhhcchhHH
Q 017520          227 SRDEDYVVVCESWK--CRKYWLKGE--RKGKL--ETFAENLP--GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK  298 (370)
Q Consensus       227 ~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~--~~~~~~~~--g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  298 (370)
                      ++||+.+|+++...  |++|+++..  .....  ..+. ...  ..|+++++|++|++|+++...               
T Consensus       190 ~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~d~~G~l~v~~~~~---------------  253 (333)
T 2dg1_A          190 STDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY-YFTGHEGPDSCCIDSDDNLYVAMYGQ---------------  253 (333)
T ss_dssp             CTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-ECCSSSEEEEEEEBTTCCEEEEEETT---------------
T ss_pred             CCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE-ecCCCCCCCceEECCCCCEEEEEcCC---------------
Confidence            99999899998644  999998532  11111  1111 111  368999999999999998653               


Q ss_pred             HHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC--ccccceeEEEE-C-CEEEEEeCCC-----CeEEEEeC
Q 017520          299 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQV-D-NHLYVISLTS-----NFIGKVQL  369 (370)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~--~~~~~t~~~~~-~-g~L~~gs~~~-----~~i~~~~~  369 (370)
                                         +.|.++|++|+.+..+..+...  ....++.+... + ++||+++..+     ..|.++++
T Consensus       254 -------------------~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~  314 (333)
T 2dg1_A          254 -------------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG  314 (333)
T ss_dssp             -------------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred             -------------------CEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence                               3589999999999888765320  11134444443 4 5899998874     36666654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.87  E-value=2.3e-19  Score=165.75  Aligned_cols=240  Identities=17%  Similarity=0.164  Sum_probs=173.9

Q ss_pred             CceEecCCCcCCCcceEEcCC-CcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520           69 DFIKVGEGSVNHPEDASMDKN-GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~-G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~  144 (370)
                      +++.+......-+|+.+++++ +.+|+.+ .+++|++++  +++...+. ....+. +++++++|++|++. ..+|++++
T Consensus        39 ~~~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~v~-~i~~~~dg~l~v~~-~~gl~~~d  115 (326)
T 2ghs_A           39 AGRVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHA-LPFMGS-ALAKISDSKQLIAS-DDGLFLRD  115 (326)
T ss_dssp             CCEEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEE-CSSCEE-EEEEEETTEEEEEE-TTEEEEEE
T ss_pred             ceEEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEE-CCCcce-EEEEeCCCeEEEEE-CCCEEEEE
Confidence            345566554556889999985 6777776 678999999  55665553 345678 99999999999987 56899999


Q ss_pred             -CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc
Q 017520          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (370)
Q Consensus       145 -~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~  222 (370)
                       .+| ++.+.....+.+...++++++|++|++|+++....           +....++|++++ + ++.+.+......++
T Consensus       116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~  182 (326)
T 2ghs_A          116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPN  182 (326)
T ss_dssp             TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEE
T ss_pred             CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccC
Confidence             567 66554332223345789999999999999974210           012357899999 4 77766666667899


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeC--CC-CCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcch
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLK--GE-RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  295 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~--~~-~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  295 (370)
                      ++++++|++.+|++++..  |++|+++  +. .....+.+..  ...+.|+++++|++|++|+++...            
T Consensus       183 ~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~------------  250 (326)
T 2ghs_A          183 SICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE------------  250 (326)
T ss_dssp             EEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT------------
T ss_pred             CeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCC------------
Confidence            999999999999998754  9999985  33 3322233321  234578999999999999998754            


Q ss_pred             hHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE--C-CEEEEEeCCCC
Q 017520          296 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV--D-NHLYVISLTSN  362 (370)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~--~-g~L~~gs~~~~  362 (370)
                                            +.|.+++++|+.+..+..+..    .++.+...  + +.||+++..+.
T Consensus       251 ----------------------~~v~~~d~~g~~~~~i~~~~~----~~~~~af~g~d~~~L~vt~~~~~  294 (326)
T 2ghs_A          251 ----------------------GAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAREH  294 (326)
T ss_dssp             ----------------------TEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBCTT
T ss_pred             ----------------------CEEEEECCCCCEEEEEECCCC----CcEEEEEecCCCCEEEEEecCCC
Confidence                                  358999999999888876542    35666654  3 68999987763

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=3e-19  Score=161.34  Aligned_cols=226  Identities=15%  Similarity=0.197  Sum_probs=166.1

Q ss_pred             cCCCcceEEcCCCcEEEEec-CCeEEEEe-CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEE
Q 017520           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~-~g~I~~~~-~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~  151 (370)
                      ...|.+|++|++|++|+++. +++|++++ +|+...+...  ...|. +++++++|++|+++.. .+|++++.+| +..+
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~  139 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSGPY-GITEGLNGDIWFTQLNGDRIGKLTADGTIYEY  139 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECSTTCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCCCc-cceECCCCCEEEEccCCCeEEEECCCCCEEEc
Confidence            46899999999999999984 68899999 8777655432  35688 9999999999999874 5799999657 5543


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~d  229 (370)
                      ..  . .....++++++|++|++|+++.                 ..++|+++|++ ++...+.  .....|.+++++++
T Consensus       140 ~~--~-~~~~~~~~i~~d~~g~l~v~~~-----------------~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  198 (300)
T 2qc5_A          140 DL--P-NKGSYPAFITLGSDNALWFTEN-----------------QNNSIGRITNT-GKLEEYPLPTNAAAPVGITSGND  198 (300)
T ss_dssp             EC--S-STTCCEEEEEECTTSSEEEEET-----------------TTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTT
T ss_pred             cC--C-CCCCCceeEEECCCCCEEEEec-----------------CCCeEEEECCC-CcEEEeeCCCCCCCcceEEECCC
Confidence            21  1 1235789999999999999975                 24689999984 5555443  34567899999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeee-ccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      |+ +|+++...  |.+|+.++    ....+ .......|.++++|++|++|+++...                       
T Consensus       199 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-----------------------  250 (300)
T 2qc5_A          199 GA-LWFVEIMGNKIGRITTTG----EISEYDIPTPNARPHAITAGKNSEIWFTEWGA-----------------------  250 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT-----------------------
T ss_pred             CC-EEEEccCCCEEEEEcCCC----cEEEEECCCCCCCceEEEECCCCCEEEeccCC-----------------------
Confidence            97 89988654  99998643    22222 11122458889999999999998653                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                 +.|.+++++|++. .+..+.+.  ..+..+... +|+||+++. + .|.+++.
T Consensus       251 -----------~~i~~~~~~g~~~-~~~~~~~~--~~~~~i~~~~~g~l~v~~~-~-~i~~~~p  298 (300)
T 2qc5_A          251 -----------NQIGRITNDNTIQ-EYQLQTEN--AEPHGITFGKDGSVWFALK-C-KIGKLNL  298 (300)
T ss_dssp             -----------TEEEEECTTSCEE-EEECCSTT--CCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred             -----------CeEEEECCCCcEE-EEECCccC--CccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence                       3589999987665 45444332  234555554 689999998 6 8888875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.86  E-value=5.3e-19  Score=159.73  Aligned_cols=228  Identities=17%  Similarity=0.238  Sum_probs=169.2

Q ss_pred             cCCCcceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEE
Q 017520           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~  151 (370)
                      ...|++|++|++|++|+++ .+++|.+++ ++++..+...  ...|. +++++++|++|+++.. ++|++++.+| ...+
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~   97 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDIWFTENGANKIGKLSKKGGFTEY   97 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCEEEEecCCCeEEEECCCCCeEEe
Confidence            5789999999999999999 578999999 7776665432  35688 9999999999999875 5699999657 5443


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~d  229 (370)
                      ...  . ....+++++++++|++|+++.                 ..+.|+++|++ ++...+.  .....|++++++++
T Consensus        98 ~~~--~-~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~  156 (300)
T 2qc5_A           98 PLP--Q-PDSGPYGITEGLNGDIWFTQL-----------------NGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD  156 (300)
T ss_dssp             ECS--S-TTCCEEEEEECSTTCEEEEET-----------------TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC--C-CCCCCccceECCCCCEEEEcc-----------------CCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC
Confidence            221  1 125788999999999999975                 24689999998 6555432  24567899999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      |+ +|+++...  |++|+.++    +...+. ......|.++++|++|++|+++...                       
T Consensus       157 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~-----------------------  208 (300)
T 2qc5_A          157 NA-LWFTENQNNSIGRITNTG----KLEEYPLPTNAAAPVGITSGNDGALWFVEIMG-----------------------  208 (300)
T ss_dssp             SS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT-----------------------
T ss_pred             CC-EEEEecCCCeEEEECCCC----cEEEeeCCCCCCCcceEEECCCCCEEEEccCC-----------------------
Confidence            98 99998744  99998743    222222 1222358899999999999998654                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                 +.+.+++++|+.... ..+.+  ...+..+... +|+||+++...+.|.+++.
T Consensus       209 -----------~~i~~~~~~g~~~~~-~~~~~--~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          209 -----------NKIGRITTTGEISEY-DIPTP--NARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             -----------TEEEEECTTCCEEEE-ECSST--TCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             -----------CEEEEEcCCCcEEEE-ECCCC--CCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence                       458999998876653 33222  2334555554 6899999999899998874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.86  E-value=8.4e-19  Score=158.31  Aligned_cols=228  Identities=15%  Similarity=0.256  Sum_probs=168.0

Q ss_pred             cCCCcceEEcCCCcEEEEec-CCeEEEEe-CCeEEEEEe--cCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEE
Q 017520           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~-~g~I~~~~-~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~  151 (370)
                      ...|.+|++|++|++|+++. +++|.+++ ++++..+..  ....|. +++++++|++|+++.. ++|++++.++ ++.+
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            56899999999999999995 68899999 877666542  245688 9999999999999874 5699999667 5544


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~d  229 (370)
                      ...   .....+++++++++|++|+++.                 ..++|+++|+ +++...+.  .....|++++++++
T Consensus        93 ~~~---~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~  151 (299)
T 2z2n_A           93 TLP---NPDSAPYGITEGPNGDIWFTEM-----------------NGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD  151 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             eCC---CcCCCceeeEECCCCCEEEEec-----------------CCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC
Confidence            321   1235788999999999999975                 2468999999 45555443  23567899999999


Q ss_pred             CCEEEEEeCC-c-EEEEEeCCCCCCceeee-ccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESW-K-CRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~-~-l~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      |+ +|+++.. + |++++.++    +...+ .......|.++++|++|++|+++...                       
T Consensus       152 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----------------------  203 (299)
T 2z2n_A          152 NA-LWFTENQNNAIGRITESG----DITEFKIPTPASGPVGITKGNDDALWFVEIIG-----------------------  203 (299)
T ss_dssp             SC-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECTTSSEEEEETTT-----------------------
T ss_pred             CC-EEEEeCCCCEEEEEcCCC----cEEEeeCCCCCCcceeEEECCCCCEEEEccCC-----------------------
Confidence            97 8888764 3 99998732    23322 11222357889999999999998643                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                 +.+.+++++|+... +..+..  ...+..+... +|+||+++...+.|.+++.
T Consensus       204 -----------~~i~~~~~~g~~~~-~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          204 -----------NKIGRITTSGEITE-FKIPTP--NARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             -----------TEEEEECTTCCEEE-EECSST--TCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             -----------ceEEEECCCCcEEE-EECCCC--CCCceeEEECCCCCEEEeccCCceEEEECC
Confidence                       35899999777543 543322  2345556554 6899999988899998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=2.1e-19  Score=172.29  Aligned_cols=236  Identities=13%  Similarity=0.097  Sum_probs=173.6

Q ss_pred             CcCCCcceEEcC--CCcEEEEecCCeEEEEe-C-CeEEEEEecCCCceeceEEcCCCc-EEEEeCCC-----ceEEEcCC
Q 017520           77 SVNHPEDASMDK--NGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-----GLHKVSED  146 (370)
Q Consensus        77 ~~~~P~~i~~d~--~G~l~v~~~~g~I~~~~-~-g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-----gi~~~~~~  146 (370)
                      .+..|.+|++|+  +|+||+++..++|.+++ + +.+..+......|. +|+++++|+ ||+++...     .++.++++
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            477999999995  69999999668999999 4 56777766677899 999999998 99999742     35666655


Q ss_pred             C-eE---EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCC
Q 017520          147 G-VE---NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFY  219 (370)
Q Consensus       147 g-~~---~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~  219 (370)
                      | +.   .+.      .+..|+++++++ +|+||++|.                 ..++|++++++++....+.  ....
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~-----------------~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSW-----------------NAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEEC-----------------CCCEEEEEECCCCcEEEEEEcCCCC
Confidence            5 32   221      246899999999 899999986                 3579999999877663332  2345


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccC--C------------CCCCC-ceeE--------CC
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAEN--L------------PGAPD-NINL--------AP  272 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~--~------------~g~p~-~i~~--------d~  272 (370)
                      .|++++++++|+.+|+++...  |++++.++.  .......+...  .            -..|. ++++        |+
T Consensus       271 ~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~  350 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSD  350 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSC
T ss_pred             cceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCC
Confidence            799999999999999999876  999988753  11111122111  0            11366 7777        56


Q ss_pred             CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCC--------CC-----C
Q 017520          273 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDP--------TG-----Q  339 (370)
Q Consensus       273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~--------~g-----~  339 (370)
                      +|+||++...+                                  ..|.+++++|++.......        +|     .
T Consensus       351 ~g~lyvaD~~n----------------------------------~~I~~i~~~G~v~~~~g~g~~~~~G~~dG~~~~~~  396 (430)
T 3tc9_A          351 EYDFYFCDREN----------------------------------HCIRILTPQGRVTTFAGRGSNGTSGYNDGDLRQEA  396 (430)
T ss_dssp             CEEEEEEEGGG----------------------------------TEEEEECTTSEEEEEEECCTTSSSSCBCEETTTTC
T ss_pred             CCeEEEEECCC----------------------------------cEEEEECCCCcEEEEEeCCCCCCCcccCCCchhhc
Confidence            79999999765                                  4689999999877766431        22     1


Q ss_pred             ccccceeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 017520          340 LMSFVTSGLQV--DNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       340 ~~~~~t~~~~~--~g~L~~gs~~~~~i~~~~~~  370 (370)
                      .++....+...  +|+||++...++.|.++.++
T Consensus       397 ~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          397 RFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             BCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            24456666665  58999999999999999864

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.85  E-value=7.2e-19  Score=158.76  Aligned_cols=227  Identities=15%  Similarity=0.202  Sum_probs=166.0

Q ss_pred             cCCCcceEEcCCCcEEEEec-CCeEEEEe-CCeEEEEEe--cCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEE
Q 017520           78 VNHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~-~g~I~~~~-~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~  151 (370)
                      ...|.+|++|++|++|+++. +++|++++ +++++.+..  ....|. +++++++|+||+++.. .+|++++++| ...+
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~  134 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDIWFTEMNGNRIGRITDDGKIREY  134 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCEEEEETTTTEEEEECTTCCEEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCEEEEecCCceEEEECCCCCEEEe
Confidence            35799999999999999984 68899999 777766653  345788 9999999999999864 5799999766 5543


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--ecCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~p~gi~~~~d  229 (370)
                      ...   .....++++++|++|++|+++.                 ..+.|+++|+ +++...+  ......|.+++++++
T Consensus       135 ~~~---~~~~~~~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~  193 (299)
T 2z2n_A          135 ELP---NKGSYPSFITLGSDNALWFTEN-----------------QNNAIGRITE-SGDITEFKIPTPASGPVGITKGND  193 (299)
T ss_dssp             ECS---STTCCEEEEEECTTSCEEEEET-----------------TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT
T ss_pred             cCC---CCCCCCceEEEcCCCCEEEEeC-----------------CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCC
Confidence            221   1235788999999999999975                 3468999999 5666544  234567899999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeee-ccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETF-AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~-~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      |+ +|+++...  |.+|+.++    ....+ .......|.++++|++|++|+++...                       
T Consensus       194 g~-l~v~~~~~~~i~~~~~~g----~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----------------------  245 (299)
T 2z2n_A          194 DA-LWFVEIIGNKIGRITTSG----EITEFKIPTPNARPHAITAGAGIDLWFTEWGA-----------------------  245 (299)
T ss_dssp             SS-EEEEETTTTEEEEECTTC----CEEEEECSSTTCCEEEEEECSTTCEEEEETTT-----------------------
T ss_pred             CC-EEEEccCCceEEEECCCC----cEEEEECCCCCCCceeEEECCCCCEEEeccCC-----------------------
Confidence            98 89988643  99998732    23222 11122458889999999999998553                       


Q ss_pred             cccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                                 +.|.+++++|+ +..+..+.+.  ..+..+...+|+||+++. .+.|.+++.
T Consensus       246 -----------~~i~~~d~~g~-~~~~~~~~~~--~~~~~i~~~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          246 -----------NKIGRLTSNNI-IEEYPIQIKS--AEPHGICFDGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             -----------TEEEEEETTTE-EEEEECSSSS--CCEEEEEECSSCEEEEET-TTEEEEEEE
T ss_pred             -----------ceEEEECCCCc-eEEEeCCCCC--CccceEEecCCCEEEEec-CCcEEEEEc
Confidence                       35899998775 4455443322  234444446799999986 678888864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.84  E-value=2.5e-18  Score=163.80  Aligned_cols=235  Identities=13%  Similarity=0.069  Sum_probs=168.5

Q ss_pred             CcCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC--ceEEEcCC-C-e
Q 017520           77 SVNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN--GLHKVSED-G-V  148 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~--gi~~~~~~-g-~  148 (370)
                      .+..|.+|++|++|+||+++ .+++|.+++  ++.+..+......|.  ++++++|+ ||+++...  .|+++++. + .
T Consensus       129 ~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~--ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          129 KFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK--PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB--CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             ccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc--eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence            47789999999999999999 568999999  467777765544443  89999886 78888654  69999843 4 3


Q ss_pred             -EEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE----ecCCC--C
Q 017520          149 -ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV----ADGFY--F  220 (370)
Q Consensus       149 -~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~----~~~~~--~  220 (370)
                       ..+. .........++++++++ +|+||+++.                  .++|+++|++++....+    ..+..  .
T Consensus       207 ~~~~g-~~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~  267 (409)
T 3hrp_A          207 PTRIG-QLGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGTN  267 (409)
T ss_dssp             EEEEE-ECCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCCS
T ss_pred             eEEee-eccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCCC
Confidence             2331 11111346789999999 789999753                  36899999987776655    22222  2


Q ss_pred             cc-ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCC--------------CCCCCceeECCCCCEEEEEe-c
Q 017520          221 AN-GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENL--------------PGAPDNINLAPDGTFWIAII-K  282 (370)
Q Consensus       221 p~-gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~--------------~g~p~~i~~d~~G~lwv~~~-~  282 (370)
                      |. ++++++++..+|+++...  |++|+.++.    ...+....              -..|.++++|++|++|++.. .
T Consensus       268 P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~  343 (409)
T 3hrp_A          268 PGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK  343 (409)
T ss_dssp             SCCEEEEETTTTEEEEEETTTTEEEEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred             ccccEEEeCCCCEEEEEeCCCCEEEEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence            44 999999766799999876  999987653    22221111              13489999999999999987 5


Q ss_pred             CchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC------CC----CccccceeEEEE-
Q 017520          283 LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP------TG----QLMSFVTSGLQV-  350 (370)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~------~g----~~~~~~t~~~~~-  350 (370)
                      .                                  ..|.+++ ++|++.......      +|    ..+..+..+... 
T Consensus       344 ~----------------------------------~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~  389 (409)
T 3hrp_A          344 G----------------------------------YCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDG  389 (409)
T ss_dssp             T----------------------------------CEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECS
T ss_pred             C----------------------------------CEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcC
Confidence            5                                  4689999 778765544331      11    113455666655 


Q ss_pred             CCEEEEEeCCCCeEEEEeCC
Q 017520          351 DNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       351 ~g~L~~gs~~~~~i~~~~~~  370 (370)
                      +|+||++...++.|.++.++
T Consensus       390 ~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          390 EGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             SSEEEEEESTTCEEEEEEEC
T ss_pred             CCCEEEEECCCCeEEEEEeC
Confidence            59999999999999999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.84  E-value=3.5e-19  Score=164.57  Aligned_cols=240  Identities=13%  Similarity=0.138  Sum_probs=163.8

Q ss_pred             CCcCCCcceEEcCCCcEEEEecCC-------------------------eEEEEe--CCeEEEEEec--CCCceeceEEc
Q 017520           76 GSVNHPEDASMDKNGVIYTATRDG-------------------------WIKRLQ--DGTWVNWKFI--DSQTLVGLTST  126 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~~~g-------------------------~I~~~~--~g~~~~~~~~--~~~p~~gl~~d  126 (370)
                      ..+..|.+|++|++|++|+++..+                         .|++++  +|++......  ...|. +++++
T Consensus        21 ~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d   99 (329)
T 3fvz_A           21 LLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSID   99 (329)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEEC
T ss_pred             eecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEEC
Confidence            446789999999999999998443                         699999  5776544332  34799 99999


Q ss_pred             CCCcEEEEeCC-CceEEEcCCC-e---EEEEee-cC---CcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccC
Q 017520          127 KEGHLIICDNA-NGLHKVSEDG-V---ENFLSY-VN---GSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       127 ~~G~L~v~~~~-~gi~~~~~~g-~---~~~~~~-~~---g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      ++|+||+++.. +.|++++.+| .   ..+... ..   ...+..|++|++++ +|++|++++.                
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------  163 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------  163 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------
Confidence            99999999976 5688888665 2   222110 01   23456799999999 8999999851                


Q ss_pred             CCceEEEEeCCCCeEEEEe----------cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCC
Q 017520          197 PHGQLLKYDPSSNITTLVA----------DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPG  263 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~----------~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g  263 (370)
                      .+++|.+||+++.....+.          ..+..|.++++++++..+|+++...  |.+|+.++.+.  ...+. .....
T Consensus       164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~  241 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGR  241 (329)
T ss_dssp             SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTT
T ss_pred             CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCC
Confidence            3478999997754444442          1345699999999966699999876  99999872211  12221 11112


Q ss_pred             CCCceeECC------CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC
Q 017520          264 APDNINLAP------DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP  336 (370)
Q Consensus       264 ~p~~i~~d~------~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~  336 (370)
                      .+..+++.+      +|++|++....                                  ..+..++ .+|+++..+...
T Consensus       242 ~~~~~~~~pg~~~~~~g~~~v~~~~~----------------------------------~~v~~~~~~~g~~~~~~~~~  287 (329)
T 3fvz_A          242 NVFAISYIPGFLFAVNGKPYFGDQEP----------------------------------VQGFVMNFSSGEIIDVFKPV  287 (329)
T ss_dssp             CEEEEEEETTEEEEEECCCCTTCSCC----------------------------------CCEEEEETTTCCEEEEECCS
T ss_pred             CcceeeecCCEEEEeCCCEEeccCCC----------------------------------cEEEEEEcCCCeEEEEEcCC
Confidence            234444444      55555443322                                  3477777 679999888643


Q ss_pred             CCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          337 TGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       337 ~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                      .+. ...+..+... +|+||++...++.|.++++
T Consensus       288 ~~~-~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          288 RKH-FDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             SSC-CSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             CCc-cCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            333 3445566554 5899999999999999975

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=7.2e-18  Score=156.75  Aligned_cols=239  Identities=15%  Similarity=0.154  Sum_probs=161.8

Q ss_pred             ceEecCCCcCCCcceEEcCCCcEEEEec---CC--eEEEEeCCeEEEEEe-------cCCCceeceEEcCCCcEEEEeCC
Q 017520           70 FIKVGEGSVNHPEDASMDKNGVIYTATR---DG--WIKRLQDGTWVNWKF-------IDSQTLVGLTSTKEGHLIICDNA  137 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~l~v~~~---~g--~I~~~~~g~~~~~~~-------~~~~p~~gl~~d~~G~L~v~~~~  137 (370)
                      .+.+.... ..|++|+++++|++|++..   ++  +|+.+++|++..+..       ....|+ ++++|++|+|||+|..
T Consensus         9 ~~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L~v~D~g   86 (343)
T 2qe8_A            9 LEVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIVWMLDNG   86 (343)
T ss_dssp             CEEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEE-EEEECSSSEEEEEECH
T ss_pred             eEEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEee-EEEEcCCCcEEEEcCC
Confidence            34444332 5899999999999999962   34  788888776654421       124689 9999999999999964


Q ss_pred             ------CceEEEc-CCC-e-EEEEee-cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          138 ------NGLHKVS-EDG-V-ENFLSY-VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       138 ------~gi~~~~-~~g-~-~~~~~~-~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                            ..|++++ .+| + +.+... ....+..+++++++|+ +|.+|++|.+..              ..++|+++|+
T Consensus        87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d~  152 (343)
T 2qe8_A           87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVDL  152 (343)
T ss_dssp             HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEET
T ss_pred             CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEEEEEC
Confidence                  5799999 567 3 333211 1122335789999997 479999986310              2357778887


Q ss_pred             CCCeEEEEecC------------------------------CCCccceEEccCCCEEEEEeCCc--EEEEEeCC---CCC
Q 017520          207 SSNITTLVADG------------------------------FYFANGVALSRDEDYVVVCESWK--CRKYWLKG---ERK  251 (370)
Q Consensus       207 ~t~~~~~~~~~------------------------------~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~---~~~  251 (370)
                      ++++...+..+                              ...++||++++||+.||+++..+  |++++.+.   ...
T Consensus       153 ~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~  232 (343)
T 2qe8_A          153 QTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQL  232 (343)
T ss_dssp             TTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTC
T ss_pred             CCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCC
Confidence            66655443311                              02479999999999999998866  99998531   111


Q ss_pred             Cceeeec----cCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-C
Q 017520          252 GKLETFA----ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-D  326 (370)
Q Consensus       252 ~~~~~~~----~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~  326 (370)
                      ...+.+.    ....+.|+++++|++|++|++....                                  +.|.++|+ +
T Consensus       233 ~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~----------------------------------~~V~~~d~~~  278 (343)
T 2qe8_A          233 TDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAH----------------------------------SAIGVITSAD  278 (343)
T ss_dssp             CHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGG----------------------------------TEEEEEETTT
T ss_pred             ChhhhhcceEecccCCCCceEEECCCCCEEEEccCC----------------------------------CeEEEEECCC
Confidence            1111110    0123479999999999999998765                                  46899998 8


Q ss_pred             CcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCC
Q 017520          327 GTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTS  361 (370)
Q Consensus       327 g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~  361 (370)
                      |++.....++.   ...++.+... +|+||+.+...
T Consensus       279 G~~~~~~~~~~---~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          279 RAYKLLVTDEK---LSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             TEEEEEEECGG---GSCEEEEEECTTSCEEEEECCG
T ss_pred             CCEEEEEECCc---eecCCeeEECCCCcEEEEeCcc
Confidence            88666555432   3456666664 58999997644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.79  E-value=2.8e-17  Score=153.40  Aligned_cols=254  Identities=15%  Similarity=0.173  Sum_probs=164.4

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEe------cCCCceeceEEcCC----CcEEEEeCC
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKF------IDSQTLVGLTSTKE----GHLIICDNA  137 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~------~~~~p~~gl~~d~~----G~L~v~~~~  137 (370)
                      .+++++.+ +..|++|+++++|+|||++..|+|++++ +|+ +.+..      ..+.|+ ||+++++    |.|||+...
T Consensus        20 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lyv~~~~   96 (354)
T 3a9g_A           20 KISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWVYLYASY   96 (354)
T ss_dssp             EEEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEE
T ss_pred             EEEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEEEEEEec
Confidence            34566665 7899999999999999999889999998 777 54432      234688 9999986    899998763


Q ss_pred             --------CceEEEc-CCC------eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEE
Q 017520          138 --------NGLHKVS-EDG------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL  202 (370)
Q Consensus       138 --------~gi~~~~-~~g------~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~  202 (370)
                              ..|.+++ .++      .+.+....+....+.+++|++++||+|||++.....  ...  ..-.....++|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~--~~~--~~d~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD--PRL--AQDLSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC--GGG--GTCTTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC--Ccc--ccCCCCCCeEEE
Confidence                    5688888 322      222333223334567899999999999999753110  000  000123457999


Q ss_pred             EEeCCCC--------eEEEEecCCCCccceEEcc-CCCEEEEEeCCc-----EEEEEeCCCCCC------------ceee
Q 017520          203 KYDPSSN--------ITTLVADGFYFANGVALSR-DEDYVVVCESWK-----CRKYWLKGERKG------------KLET  256 (370)
Q Consensus       203 ~~d~~t~--------~~~~~~~~~~~p~gi~~~~-dg~~l~v~~~~~-----l~~~~~~~~~~~------------~~~~  256 (370)
                      |+++++.        ..+++..++.+|+|+++++ +|+ ||+++.+.     |.++. .+...+            ....
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~-l~v~d~g~~~~dei~~i~-~G~nyGwp~~~g~~~~~~~~~p  250 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGV-MVATEHGPVGHDEVNIIL-KGGNYGWPLATGKAGRGEFVDP  250 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCC-EEEEECCSSSCCEEEEEC-TTCBCCTTTCCSCCCCTTSCCC
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCC-EEEEecCCCCCcEEEEec-CCCcCCCCcccCCCCCCCCcCC
Confidence            9999854        3467788999999999999 565 99999865     44443 121111            0011


Q ss_pred             ecc--CCCCCCCceeE-------CCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC--
Q 017520          257 FAE--NLPGAPDNINL-------APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--  325 (370)
Q Consensus       257 ~~~--~~~g~p~~i~~-------d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--  325 (370)
                      ...  ....-|.++++       +-+|++|++...+                                  +.|.+++.  
T Consensus       251 ~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~----------------------------------~~v~~~~~~~  296 (354)
T 3a9g_A          251 VIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRG----------------------------------SMLAAVNFGD  296 (354)
T ss_dssp             SEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTT----------------------------------TEEEEEEECG
T ss_pred             EeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCC----------------------------------CEEEEEEECC
Confidence            110  11224788888       4678999998654                                  34566654  


Q ss_pred             CCcEE--EEEeCCCCCccccceeEEEE-CCEEEEEeCC-CC---------eEEEEe
Q 017520          326 DGTII--RNLVDPTGQLMSFVTSGLQV-DNHLYVISLT-SN---------FIGKVQ  368 (370)
Q Consensus       326 ~g~~~--~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~-~~---------~i~~~~  368 (370)
                      +|++.  ..+..  +. ...+..+... +|.||+.+.+ ..         .|.|+.
T Consensus       297 ~g~~~~~~~~~~--~~-~~rp~~v~~~pDG~lyv~~~~~~G~g~~~~~~g~i~ri~  349 (354)
T 3a9g_A          297 NMEVRKISTFFK--NV-FGRLRDVVIDDDGGILISTSNRDGRGSLRAGDDKILKIV  349 (354)
T ss_dssp             GGCEEEEEEECT--TT-SCCEEEEEECTTSCEEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred             CCcccceeeecc--CC-CCCeeEEEECCCCcEEEEEeCCCCCcCCCCCCCEEEEEe
Confidence            34543  23322  21 2234556554 6899999874 22         788875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.79  E-value=2.1e-17  Score=170.46  Aligned_cols=226  Identities=14%  Similarity=0.171  Sum_probs=166.4

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEec---------CCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI---------DSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG  147 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~---------~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g  147 (370)
                      ..+|+.|++|+||+|+.+++|.+++  +++++.+...         ..... +++.|++|+ ||++...+||++++ .++
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~lWigt~~~Gl~~~d~~~~  437 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLVYIGTHAGGLSILHRNSG  437 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEEEEEETTTEEEEEETTTC
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEEEEEeCcCceeEEeCCCC
Confidence            4578899999999999887899999  5677766421         23456 889999999 99999878999999 556


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-----C--C
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-----F--Y  219 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-----~--~  219 (370)
                       ++.+.......+...+..+..|++|+||++..                   ++|+++|+++++++.+...     +  .
T Consensus       438 ~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~  498 (795)
T 4a2l_A          438 QVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVSK  498 (795)
T ss_dssp             CEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCCC
T ss_pred             cEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCCc
Confidence             66553221222335678899999999999953                   4799999998887765422     1  2


Q ss_pred             CccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeecc--CCCCC----CCceeECCCCCEEEEEecCchhHHHhhhc
Q 017520          220 FANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAE--NLPGA----PDNINLAPDGTFWIAIIKLDARRMKILNS  293 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~--~~~g~----p~~i~~d~~G~lwv~~~~~~~~~~~~~~~  293 (370)
                      ....+..+++|+ +|++...+|++|+.++.+.    .+..  ...+.    ...|+.|++|++|+++..+          
T Consensus       499 ~i~~i~~d~~g~-lWigt~~Gl~~~~~~~~~~----~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~G----------  563 (795)
T 4a2l_A          499 QITTLFRDSHKR-LWIGGEEGLSVFKQEGLDI----QKASILPVSNVTKLFTNCIYEASNGIIWVGTREG----------  563 (795)
T ss_dssp             CEEEEEECTTCC-EEEEESSCEEEEEEETTEE----EECCCSCSCGGGGSCEEEEEECTTSCEEEEESSC----------
T ss_pred             eEEEEEECCCCC-EEEEeCCceEEEeCCCCeE----EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCCC----------
Confidence            345678889998 8888875699999865432    2210  11122    3347789999999999765          


Q ss_pred             chhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          294 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                                ++++|++.+.+..|...+|...+.+.++.++ +|+||+++.  +.|.+++.
T Consensus       564 --------------------------l~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t~--~Gl~~~~~  612 (795)
T 4a2l_A          564 --------------------------FYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLSTN--RGISCFNP  612 (795)
T ss_dssp             --------------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEET--TEEEEEET
T ss_pred             --------------------------ceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEcC--CceEEEcC
Confidence                                      8999998888888887778766677777766 599999994  56776653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=7.2e-17  Score=149.06  Aligned_cols=212  Identities=13%  Similarity=0.080  Sum_probs=151.8

Q ss_pred             cCCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCC------CceeceEEcCCCcEEEEeC--CCceEEEc-C
Q 017520           78 VNHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEGHLIICDN--ANGLHKVS-E  145 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~------~p~~gl~~d~~G~L~v~~~--~~gi~~~~-~  145 (370)
                      ...|++|+++++|.+|+++ .++.|.+++  ++++........      .|. +|++ .++.|||++.  .+.|..++ .
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~lyv~~~~~~~~v~viD~~  160 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYVYVNCWSYQNRILKIDTE  160 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEEEEEECTTCCEEEEEETT
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEEEEEcCCCCCEEEEEECC
Confidence            3689999998889999999 789999999  677665444444      788 9999 5789999986  35789999 5


Q ss_pred             CC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--CCCCcc
Q 017520          146 DG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFAN  222 (370)
Q Consensus       146 ~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~p~  222 (370)
                      ++ +......  +   ..|++++++++|++|+++... +.-      .......+.|+++|++++++.....  ....|+
T Consensus       161 t~~~~~~i~~--g---~~p~~i~~~~dG~l~v~~~~~-~~~------~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~  228 (328)
T 3dsm_A          161 TDKVVDELTI--G---IQPTSLVMDKYNKMWTITDGG-YEG------SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPS  228 (328)
T ss_dssp             TTEEEEEEEC--S---SCBCCCEECTTSEEEEEBCCB-CTT------CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCE
T ss_pred             CCeEEEEEEc--C---CCccceEEcCCCCEEEEECCC-ccC------CccccCCceEEEEECCCCeEEEEEecCCCCCce
Confidence            66 3322221  2   357899999999999997531 000      0000114789999999887653322  134799


Q ss_pred             ceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHH
Q 017520          223 GVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      ++++++|++.+|+++. .|+++|.++.+... ..+.......|+++++|+ +|++|++....                  
T Consensus       229 ~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~~g~lyva~~~~------------------  288 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPNNGEVYVADAID------------------  288 (328)
T ss_dssp             EEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTTTCCEEEEECTT------------------
T ss_pred             eEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCCCCeEEEEcccc------------------
Confidence            9999999999999987 79999987654322 122221135799999997 78999998321                  


Q ss_pred             HhCCccccccccCCCceEEEEECCCCcEEEEEeC
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVD  335 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~  335 (370)
                                  ....+.|.+||++|++++.+..
T Consensus       289 ------------y~~~~~V~v~d~~g~~~~~i~~  310 (328)
T 3dsm_A          289 ------------YQQQGIVYRYSPQGKLIDEFYV  310 (328)
T ss_dssp             ------------SSSEEEEEEECTTCCEEEEEEE
T ss_pred             ------------cccCCEEEEECCCCCEEEEEEe
Confidence                        1113679999999999998865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.77  E-value=9.4e-17  Score=149.62  Aligned_cols=181  Identities=12%  Similarity=0.143  Sum_probs=137.7

Q ss_pred             cCCCcceEEc-CCCcEEEEe-cCCeEEEEe-CCe-EEEEEe-cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--e
Q 017520           78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V  148 (370)
Q Consensus        78 ~~~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g~-~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~  148 (370)
                      +..|+++++| .++.||+++ .+++|++++ +|. .+.+.. ....|. |+++|. .|+||+++.. +.|.+++.+|  .
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~~  150 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  150 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcCCCCce
Confidence            5789999999 588999999 678999999 553 444433 345788 999996 6789999976 5688888766  4


Q ss_pred             EEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEE
Q 017520          149 ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVAL  226 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~  226 (370)
                      +.+..    ..+..|++|++|+ +|.||++|..                ..++|+++++++...+.+. .++..|+|+++
T Consensus       151 ~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~  210 (349)
T 3v64_C          151 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  210 (349)
T ss_dssp             EEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCEEEEEE
T ss_pred             EEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCcceEEE
Confidence            44432    1246799999997 6789999863                2378999999866555543 56888999999


Q ss_pred             ccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          227 SRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       227 ~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |++++.|||++...  |.++++++.   ..+.+.....+.|++|+++ +|++|++....
T Consensus       211 d~~~~~lY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~~  265 (349)
T 3v64_C          211 DYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWHT  265 (349)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCC---ceEEEEeCCCCCceEEEEE-CCEEEEecCCC
Confidence            99888899999876  999998874   2333333334579999995 57899998765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=2e-17  Score=170.21  Aligned_cols=225  Identities=12%  Similarity=0.077  Sum_probs=162.2

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe----cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF----IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~----~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      ..+|+.|++|+||+|+.+++|++++  ++.++.+..    ...... +++.|++|+||++....|+++++ .++ ++.+.
T Consensus       365 v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          365 VSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL-CSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             EEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE-EEEECTTSCEEEEETTEEEEEECSSSCEEEECC
T ss_pred             eEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE-EEEECCCCCEEEEeccCCEEEEcCCCCcEEEec
Confidence            4678899999999999777799999  334443321    123466 89999999999998778999999 456 55442


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC------CCCccceEE
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------FYFANGVAL  226 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~------~~~p~gi~~  226 (370)
                      ..  +.....+..+..|++|+||++..                   ++|+++|+++++++.+...      ......++.
T Consensus       444 ~~--~~~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~  502 (781)
T 3v9f_A          444 LE--KNELLDVRVFYEDKNKKIWIGTH-------------------AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQ  502 (781)
T ss_dssp             ST--TTCCCCEEEEEECTTSEEEEEET-------------------TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEE
T ss_pred             cC--CCCCCeEEEEEECCCCCEEEEEC-------------------CceEEEeCCCCeEEecccCcccccccceeEEEEE
Confidence            21  22335678899999999999953                   5799999988776655422      134567888


Q ss_pred             ccCCCEEEEEeCC-cEEEEEeCCCCCCceeeeccCCCCCCC----ceeECCCCCEEEEEecCchhHHHhhhcchhHHHHH
Q 017520          227 SRDEDYVVVCESW-KCRKYWLKGERKGKLETFAENLPGAPD----NINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       227 ~~dg~~l~v~~~~-~l~~~~~~~~~~~~~~~~~~~~~g~p~----~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      +++|+ +|++..+ +|++|+.++.   ..+.+. ...+++.    .++.|++|++|+++..+                  
T Consensus       503 d~~g~-lWigt~~~Gl~~~~~~~~---~~~~~~-~~~~l~~~~i~~i~~d~~g~lWi~T~~G------------------  559 (781)
T 3v9f_A          503 DSEGR-FWIGTFGGGVGIYTPDMQ---LVRKFN-QYEGFCSNTINQIYRSSKGQMWLATGEG------------------  559 (781)
T ss_dssp             CTTCC-EEEEESSSCEEEECTTCC---EEEEEC-TTTTCSCSCEEEEEECTTSCEEEEETTE------------------
T ss_pred             cCCCC-EEEEEcCCCEEEEeCCCC---eEEEcc-CCCCCCCCeeEEEEECCCCCEEEEECCC------------------
Confidence            99998 8888874 4999986543   334442 1223343    47789999999999743                  


Q ss_pred             HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                       .++++|++.+.+..|...+|...+.+.++.++ +|+||+++.++  |.+++.
T Consensus       560 -----------------lv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t~~G--l~~~~~  609 (781)
T 3v9f_A          560 -----------------LVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTG--ISCYIT  609 (781)
T ss_dssp             -----------------EEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEECSSC--EEEEET
T ss_pred             -----------------ceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEcCCc--eEEEEC
Confidence                             34899998777888887778766677777665 59999999654  766653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.76  E-value=1.3e-16  Score=142.20  Aligned_cols=182  Identities=17%  Similarity=0.229  Sum_probs=132.7

Q ss_pred             CcCCCcceEEcCCCcEEEEecCCeEEEEe-CCe-EEEEEe-cCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEE
Q 017520           77 SVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENF  151 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~-~~~~~~-~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~  151 (370)
                      .+..|.+|++|++|++|+++.+++|++++ ++. ...+.. ....|. +++++++|+||+++.. ++|++++... ....
T Consensus        65 ~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~-~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~  143 (270)
T 1rwi_B           65 GLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV  143 (270)
T ss_dssp             SCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEE-EEEECTTCCEEEEEGGGTEEEEECTTCCSCEE
T ss_pred             CcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCc-ceEECCCCCEEEEECCCCEEEEEECCCceeEe
Confidence            35689999999999999999888999999 554 333322 225688 9999999999999865 5688887433 2222


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg  230 (370)
                      ..   ...+..+++|+++++|++|+++.                 ..++|+++|++++..... ...+..|.+++++++|
T Consensus       144 ~~---~~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g  203 (270)
T 1rwi_B          144 LP---FTGLNDPDGVAVDNSGNVYVTDT-----------------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG  203 (270)
T ss_dssp             CC---CCSCCSCCCEEECTTCCEEEEEG-----------------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC
T ss_pred             ec---cccCCCceeEEEeCCCCEEEEEC-----------------CCCEEEEEecCCCceEeecccCCCCceEEEECCCC
Confidence            11   12245789999999999999975                 346899999987655433 2345789999999999


Q ss_pred             CEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          231 DYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      + +|+++...  |.+|+.++...   ..........|.++++|++|++|++....
T Consensus       204 ~-l~v~~~~~~~v~~~~~~~~~~---~~~~~~~~~~p~~i~~~~~g~l~v~~~~~  254 (270)
T 1rwi_B          204 T-VYVTEHNTNQVVKLLAGSTTS---TVLPFTGLNTPLAVAVDSDRTVYVADRGN  254 (270)
T ss_dssp             C-EEEEETTTSCEEEECTTCSCC---EECCCCSCSCEEEEEECTTCCEEEEEGGG
T ss_pred             C-EEEEECCCCcEEEEcCCCCcc---eeeccCCCCCceeEEECCCCCEEEEECCC
Confidence            6 99998654  99998765321   11111111358899999999999998764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.76  E-value=6.1e-16  Score=144.13  Aligned_cols=225  Identities=12%  Similarity=0.107  Sum_probs=165.7

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEc-CCCcEEEEeCC-CceEEEcCCC--eEEEEee
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSEDG--VENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d-~~G~L~v~~~~-~gi~~~~~~g--~~~~~~~  154 (370)
                      -.+.+.++++.|++++.+ .|.+++ ++ ..+........|. ++++| .++.||++|.. +.|++++.+|  .+.+...
T Consensus        36 ~~C~~~~~~~~ll~~~~~-~I~~i~~~g~~~~~~~~~~~~~~-~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGPEPVLLFANRI-DIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSSCCEEEEECBS-CEEEECTTSCCEEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             CcccccccCceeEeeccc-ceEEEeCCCCeeEEeecCCCceE-EEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            345566677888888754 599999 55 4555555667799 99999 46789999976 5688998655  4444321


Q ss_pred             cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~  232 (370)
                          .+..|.+|++|+ +|+||++|..                 .++|.+++.++...+.+. ..+..|+++++++++..
T Consensus       114 ----~~~~p~glavd~~~g~ly~~d~~-----------------~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~  172 (349)
T 3v64_C          114 ----GLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  172 (349)
T ss_dssp             ----SCSCCCEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTE
T ss_pred             ----CCCCccEEEEecCCCeEEEEcCC-----------------CCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCe
Confidence                235789999996 6799999873                 468999999866555554 56789999999998888


Q ss_pred             EEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccc
Q 017520          233 VVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  308 (370)
Q Consensus       233 l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (370)
                      |||++.+.   |++++++|.   ..+.+....-..|++|++|+ +++||++....                         
T Consensus       173 ly~td~~~~~~I~r~~~dG~---~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~-------------------------  224 (349)
T 3v64_C          173 IYWTDWGNTPRIEASSMDGS---GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKH-------------------------  224 (349)
T ss_dssp             EEEEECSSSCEEEEEETTSC---SCEESCCSSCSCEEEEEEETTTTEEEEEETTT-------------------------
T ss_pred             EEEeccCCCCEEEEEeCCCC---CcEEEEECCCCCcceEEEeCCCCEEEEEECCC-------------------------
Confidence            99999764   999998874   22333322234699999995 67899998664                         


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          309 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       309 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                               +.|.+++.+|...+.+-...   ......+...+++||+....++.|.+++
T Consensus       225 ---------~~I~~~~~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          225 ---------HVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             ---------TEEEEEETTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---------CEEEEEeCCCCceEEEEeCC---CCCceEEEEECCEEEEecCCCCeEEEEE
Confidence                     46889998887655544322   2244555557899999999999999986

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.6e-16  Score=163.42  Aligned_cols=223  Identities=12%  Similarity=0.131  Sum_probs=158.5

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe----------cCCCceeceEEcCCCcEEEEeCCCceEEEcCC-C
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF----------IDSQTLVGLTSTKEGHLIICDNANGLHKVSED-G  147 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~----------~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~-g  147 (370)
                      ..+|+.|++|+||+|+.+++|.+++  .+.++.+..          ...... +++.|++|+||++...+||+++++. +
T Consensus       315 v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt~~~Gl~~~~~~~~  393 (781)
T 3v9f_A          315 ARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVS-SVCDDGQGKLWIGTDGGGINVFENGKR  393 (781)
T ss_dssp             EEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEE-EEEECTTSCEEEEEBSSCEEEEETTEE
T ss_pred             EEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceE-EEEEcCCCCEEEEeCCCcEEEEECCCC
Confidence            4578999999999999778899999  456666532          123456 8999999999999877899999953 4


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC---CCCccc
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANG  223 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~p~g  223 (370)
                       ++.+.. ..+.....+.+++.|++|+||++..                  .++|+++|+++++++.+...   ......
T Consensus       394 ~~~~~~~-~~~~~~~~v~~i~~d~~g~lWigt~------------------~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~  454 (781)
T 3v9f_A          394 VAIYNKE-NRELLSNSVLCSLKDSEGNLWFGTY------------------LGNISYYNTRLKKFQIIELEKNELLDVRV  454 (781)
T ss_dssp             EEECC------CCCSBEEEEEECTTSCEEEEET------------------TEEEEEECSSSCEEEECCSTTTCCCCEEE
T ss_pred             eEEEccC-CCCCCCcceEEEEECCCCCEEEEec------------------cCCEEEEcCCCCcEEEeccCCCCCCeEEE
Confidence             433311 1122335678899999999999964                  26899999988887765431   223456


Q ss_pred             eEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeecc-C-CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHH
Q 017520          224 VALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAE-N-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       224 i~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      ++.+++|+ +|++...+|++|+.++.+......... . .......++.|++|++|+++..+                  
T Consensus       455 i~~d~~g~-lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~------------------  515 (781)
T 3v9f_A          455 FYEDKNKK-IWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGG------------------  515 (781)
T ss_dssp             EEECTTSE-EEEEETTEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSS------------------
T ss_pred             EEECCCCC-EEEEECCceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCC------------------
Confidence            77788886 888887669999976543322111000 0 01234558899999999999742                  


Q ss_pred             HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeC
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISL  359 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~  359 (370)
                                       ++++++++++.+..|....+...+.+..+.++ +|+||+|+.
T Consensus       516 -----------------Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~  557 (781)
T 3v9f_A          516 -----------------GVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG  557 (781)
T ss_dssp             -----------------CEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET
T ss_pred             -----------------CEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC
Confidence                             28999999888888877777666677777765 599999997

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.75  E-value=1.2e-16  Score=142.92  Aligned_cols=198  Identities=12%  Similarity=0.089  Sum_probs=148.0

Q ss_pred             CCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCe-EEEEEec-CCCceeceEEcCC-CcEEEEeCC-CceEEEcCCC--eE
Q 017520           79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVNWKFI-DSQTLVGLTSTKE-GHLIICDNA-NGLHKVSEDG--VE  149 (370)
Q Consensus        79 ~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~-~~~~~~~-~~~p~~gl~~d~~-G~L~v~~~~-~gi~~~~~~g--~~  149 (370)
                      .+|+++++|+ +++||+++ .+++|++++ +|. .+.+... ...|. ++++|++ ++||+++.. +.|.+++.+|  .+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence            4789999997 67999999 678999999 554 3444332 35799 9999985 689999976 4688888666  44


Q ss_pred             EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEc
Q 017520          150 NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALS  227 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~  227 (370)
                      .+...    .+..|+++++|+ +|+||+++..               ...++|++++.++...+.+. ..+..|+|++++
T Consensus       115 ~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d  175 (267)
T 1npe_A          115 VLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFD  175 (267)
T ss_dssp             EEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEE
T ss_pred             EEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEEc
Confidence            44321    235789999999 5799999853               12468999998765555444 567789999999


Q ss_pred             cCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCC
Q 017520          228 RDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  305 (370)
Q Consensus       228 ~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (370)
                      ++++.|||++...  |.++++++.   ....+.. ....|++++.| +|++|++....                      
T Consensus       176 ~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d-~~~lyva~~~~----------------------  228 (267)
T 1npe_A          176 AFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY-GKNLYYTDWKT----------------------  228 (267)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE-TTEEEEEETTT----------------------
T ss_pred             CCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe-CCEEEEEECCC----------------------
Confidence            9988899999876  999998763   2233332 23468999998 58899998765                      


Q ss_pred             ccccccccCCCceEEEEECCC-CcEEEEEeC
Q 017520          306 KLFSQFITLGGGAHLIHVAED-GTIIRNLVD  335 (370)
Q Consensus       306 ~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~  335 (370)
                                  +.|.++|++ |+.+..+..
T Consensus       229 ------------~~v~~~d~~~g~~~~~i~~  247 (267)
T 1npe_A          229 ------------NSVIAMDLAISKEMDTFHP  247 (267)
T ss_dssp             ------------TEEEEEETTTTEEEEEECC
T ss_pred             ------------CeEEEEeCCCCCceEEEcc
Confidence                        468999985 888888754

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.75  E-value=1.4e-16  Score=164.28  Aligned_cols=223  Identities=14%  Similarity=0.184  Sum_probs=160.7

Q ss_pred             CcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEe-----cCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEE
Q 017520           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VEN  150 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~-----~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~  150 (370)
                      ..+++.|++|+ ||+|+.+++|++++  +++++.+..     ....+. +++.|++|+||++.. .|+++++ .++ ++.
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~  485 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVY-AILPDGEGNLWLGTL-SALVRFNPEQRSFTT  485 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEE-EEEECSSSCEEEEES-SCEEEEETTTTEEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeE-EEEECCCCCEEEEec-CceeEEeCCCCeEEE
Confidence            45788899999 99999878899999  577777643     123466 899999999999986 7999999 456 554


Q ss_pred             EEeec--CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CC--CCc
Q 017520          151 FLSYV--NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GF--YFA  221 (370)
Q Consensus       151 ~~~~~--~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~--~~p  221 (370)
                      +....  .+.....+..+..|++|++|++..                   ++|+++|++++++ .+..     .+  ...
T Consensus       486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------------~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i  545 (795)
T 4a2l_A          486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------------EGLSVFKQEGLDI-QKASILPVSNVTKLFT  545 (795)
T ss_dssp             CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------------SCEEEEEEETTEE-EECCCSCSCGGGGSCE
T ss_pred             ccccccccccCCceEEEEEECCCCCEEEEeC-------------------CceEEEeCCCCeE-EEecCCCCCCCCCCee
Confidence            42210  122234678899999999999953                   5799999887776 3321     11  134


Q ss_pred             cceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCc----eeECCCCCEEEEEecCchhHHHhhhcchhH
Q 017520          222 NGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDN----INLAPDGTFWIAIIKLDARRMKILNSSKLI  297 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~----i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  297 (370)
                      ..++.+++|+ +|++..++|++|+.++.   .++.+. ...++|++    ++.|++|++|+++..+              
T Consensus       546 ~~i~~d~~g~-lWigT~~Gl~~~d~~~~---~~~~~~-~~~gl~~~~i~~i~~d~~g~lWi~t~~G--------------  606 (795)
T 4a2l_A          546 NCIYEASNGI-IWVGTREGFYCFNEKDK---QIKRYN-TTNGLPNNVVYGILEDSFGRLWLSTNRG--------------  606 (795)
T ss_dssp             EEEEECTTSC-EEEEESSCEEEEETTTT---EEEEEC-GGGTCSCSCEEEEEECTTSCEEEEETTE--------------
T ss_pred             EEEEECCCCC-EEEEeCCCceeECCCCC---cEEEeC-CCCCCchhheEEEEECCCCCEEEEcCCc--------------
Confidence            5677888998 88887767999996543   344442 23345554    7789999999999654              


Q ss_pred             HHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccc--eeEE-EECCEEEEEeCCCCeEEEEe
Q 017520          298 KHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFV--TSGL-QVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~--t~~~-~~~g~L~~gs~~~~~i~~~~  368 (370)
                                            +.+++++.+.+..|...+|...+.+  .++. ..+|+||+|+.+|  +.+++
T Consensus       607 ----------------------l~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~g~~~G--l~~~~  656 (795)
T 4a2l_A          607 ----------------------ISCFNPETEKFRNFTESDGLQSNQFNTASYCRTSVGQMYFGGING--ITTFR  656 (795)
T ss_dssp             ----------------------EEEEETTTTEEEEECGGGTCSCSCEEEEEEEECTTSCEEEEETTE--EEEEC
T ss_pred             ----------------------eEEEcCCCCcEEEcCCcCCCccccCccCceeECCCCeEEEecCCc--eEEEc
Confidence                                  8999999888999988888755544  2333 3469999999875  44443

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.75  E-value=1.7e-16  Score=149.86  Aligned_cols=181  Identities=12%  Similarity=0.143  Sum_probs=136.7

Q ss_pred             cCCCcceEEc-CCCcEEEEe-cCCeEEEEe-CCe-EEEEEe-cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--e
Q 017520           78 VNHPEDASMD-KNGVIYTAT-RDGWIKRLQ-DGT-WVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V  148 (370)
Q Consensus        78 ~~~P~~i~~d-~~G~l~v~~-~~g~I~~~~-~g~-~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~  148 (370)
                      +..|+++++| .++.||+++ .+++|++++ +|. .+.+.. ....|. ||++|+ .|+||+++.. +.|.+++.+|  .
T Consensus       115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            6789999999 478999998 678999999 554 444433 345789 999995 6789999986 4677777666  4


Q ss_pred             EEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEE
Q 017520          149 ENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVAL  226 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~  226 (370)
                      +.+..    ..+..|++|++|+ +|.||++|..                ..++|+++++++...+.+. .++..|+||++
T Consensus       194 ~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~PnGlav  253 (386)
T 3v65_B          194 KVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWPNGLTI  253 (386)
T ss_dssp             EEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEEE
T ss_pred             EEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCeeeEEE
Confidence            44432    2246799999997 5789999864                2378999999866555544 56888999999


Q ss_pred             ccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          227 SRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       227 ~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +++++.|||++...  |.++++++.   ..+.+.....+.|++|+++ ++++|++....
T Consensus       254 d~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~giav~-~~~ly~td~~~  308 (386)
T 3v65_B          254 DYAGRRMYWVDAKHHVIERANLDGS---HRKAVISQGLPHPFAITVF-EDSLYWTDWHT  308 (386)
T ss_dssp             EGGGTEEEEEETTTTEEEEECTTSC---SCEEEECSSCSSEEEEEEE-TTEEEEEETTT
T ss_pred             eCCCCEEEEEECCCCEEEEEeCCCC---eeEEEEECCCCCceEEEEE-CCEEEEeeCCC
Confidence            99888899999876  999998874   2333333334579999995 46899998765

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.75  E-value=3.5e-16  Score=143.76  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=134.9

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC----e-EEEEEe-cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCC
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG----T-WVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g----~-~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~  146 (370)
                      +..|+++++|+ ++.||+++ .+++|++++ ++    . .+.+.. ....|. ||++|. +++||+++.. +.|.+++.+
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~ly~~d~~~~~I~~~~~~  107 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeEEEEECCCCEEEEEeCC
Confidence            57899999996 67999999 668999999 55    2 333332 335788 999995 6789999876 568888866


Q ss_pred             C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCcc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~  222 (370)
                      |  .+.+...    .+..|+++++|+ +|.||++|..                ..++|+++++++...+.+. ..+..|+
T Consensus       108 g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~~~~~P~  167 (316)
T 1ijq_A          108 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (316)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEECCCCCce
Confidence            6  4444331    245789999997 6789999863                2378999999866555543 4688999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |++++++++.|||++...  |.++++++.   ..+.+...  ....|++++++. |++|++....
T Consensus       168 gla~d~~~~~lY~~D~~~~~I~~~d~dg~---~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~  228 (316)
T 1ijq_A          168 GITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  228 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             EEEEeccCCEEEEEECCCCeEEEEecCCC---ceEEEeecCCccCCcEEEEEEC-CEEEEEECCC
Confidence            999999888899999876  999998874   23334322  234699999985 7899998765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.74  E-value=2.3e-16  Score=144.97  Aligned_cols=181  Identities=16%  Similarity=0.164  Sum_probs=135.8

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCe---EEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--  147 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~---~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--  147 (370)
                      +..|.++.+|. +|.||+++ .+++|++++ +|.   ..........|. |+++|. .|+||+++.. +.|.+++.+|  
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~ly~~d~~~~~I~~~~~dG~~  112 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGSL  112 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeEEEEECCCCEEEEEECCCCc
Confidence            45688888885 78999999 678999999 553   233344456789 999995 7789999976 5688888766  


Q ss_pred             eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceE
Q 017520          148 VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVA  225 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~  225 (370)
                      .+.+..    ..+..|+++++|+ +|.||++|..                ..++|+++++++...+.+ ..++..|+|++
T Consensus       113 ~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngla  172 (318)
T 3sov_A          113 RKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGLT  172 (318)
T ss_dssp             CEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEEE
Confidence            444432    2246789999997 5799999863                347899999986555544 36788999999


Q ss_pred             EccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          226 LSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +|++++.|||+++..  |++++++|.   ..+.+.....+.|++++++.+ ++|++....
T Consensus       173 vd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~P~glav~~~-~lywtd~~~  228 (318)
T 3sov_A          173 LDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWST  228 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSCCSCEEEEEEETT-EEEEEETTT
T ss_pred             EeccCCEEEEEECCCCEEEEEcCCCC---ceEEEecCCCCCceEEEEeCC-EEEEEecCC
Confidence            999888899999876  999999874   334444333457999999854 677777654

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.74  E-value=5.6e-16  Score=148.99  Aligned_cols=237  Identities=12%  Similarity=0.121  Sum_probs=167.8

Q ss_pred             CCcCCCcceEEcC--CCcEEEEec-CCeEEEEe--CCeEEEEEecC----CCceeceEE-------cCCCc-EEEEeCCC
Q 017520           76 GSVNHPEDASMDK--NGVIYTATR-DGWIKRLQ--DGTWVNWKFID----SQTLVGLTS-------TKEGH-LIICDNAN  138 (370)
Q Consensus        76 ~~~~~P~~i~~d~--~G~l~v~~~-~g~I~~~~--~g~~~~~~~~~----~~p~~gl~~-------d~~G~-L~v~~~~~  138 (370)
                      +.+..|..|++|+  +++||++.. +++|.+++  ++.+..+....    .+|. +|++       +++|+ ||+++...
T Consensus       136 ~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~~  214 (496)
T 3kya_A          136 CGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDYD  214 (496)
T ss_dssp             BCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECCC
T ss_pred             cccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCCC
Confidence            3466899999996  589999984 46799999  56777765432    3689 9999       99997 99998764


Q ss_pred             -------ceEEEc--CCC-eE------EEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceE
Q 017520          139 -------GLHKVS--EDG-VE------NFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       139 -------gi~~~~--~~g-~~------~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                             .++.++  .+| +.      .+.      .+..++++++++ +|+||+++.                 ..+.|
T Consensus       215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~-----------------~~g~V  271 (496)
T 3kya_A          215 GKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSY-----------------EKGQV  271 (496)
T ss_dssp             TTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEET-----------------TTTEE
T ss_pred             CCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEEC-----------------CCCEE
Confidence                   277775  345 42      222      245789999999 679999986                 45789


Q ss_pred             EEEeCC-------CCeE-------------EEE-ecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC--CCceee
Q 017520          202 LKYDPS-------SNIT-------------TLV-ADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER--KGKLET  256 (370)
Q Consensus       202 ~~~d~~-------t~~~-------------~~~-~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~--~~~~~~  256 (370)
                      +++|++       ++..             ..+ ......|.+++++++|+.+|++++.+  |++++.++..  ......
T Consensus       272 ~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~  351 (496)
T 3kya_A          272 FRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYN  351 (496)
T ss_dssp             EEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEE
T ss_pred             EEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEE
Confidence            999987       5543             112 12335688999999999999999877  9998876531  111122


Q ss_pred             eccC--CC------------CCCC-ceeEC-------CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520          257 FAEN--LP------------GAPD-NINLA-------PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  314 (370)
Q Consensus       257 ~~~~--~~------------g~p~-~i~~d-------~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
                      +...  ..            ..|. ++++|       .+|+|||+...+                               
T Consensus       352 ~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N-------------------------------  400 (496)
T 3kya_A          352 FVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLN-------------------------------  400 (496)
T ss_dssp             EEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGG-------------------------------
T ss_pred             ecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCC-------------------------------
Confidence            2211  11            2477 77887       789999999775                               


Q ss_pred             CCceEEEEECCCCcEEEEEeC--------------CCC-----CccccceeEEEE-C-CEEEEEeCCCCeEEEEeCC
Q 017520          315 GGGAHLIHVAEDGTIIRNLVD--------------PTG-----QLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       315 ~~~g~v~~~~~~g~~~~~~~~--------------~~g-----~~~~~~t~~~~~-~-g~L~~gs~~~~~i~~~~~~  370 (370)
                         .+|.+++++|.+....-.              .+|     -.++..+.+... + |+||++...+++|.++.++
T Consensus       401 ---~rIr~i~~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          401 ---FCVRKVTPEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             ---TEEEEECTTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             ---CEEEEEeCCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECC
Confidence               468999999976655432              122     124455666655 3 8999999999999999864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.74  E-value=3.8e-16  Score=145.68  Aligned_cols=166  Identities=18%  Similarity=0.199  Sum_probs=118.3

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEeCCeEEEEEe------cCCCceeceEEcCC----CcEEEEeCC-
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQDGTWVNWKF------IDSQTLVGLTSTKE----GHLIICDNA-  137 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~~g~~~~~~~------~~~~p~~gl~~d~~----G~L~v~~~~-  137 (370)
                      .+++++.+ +..|++|+++++|+|||++..|+|+++++|+.+.+..      ....|+ ||+++++    +.|||++.. 
T Consensus        22 ~~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFREGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEECCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEecC
Confidence            34566665 7899999999999999999889999999766554432      235689 9999997    789999763 


Q ss_pred             -----CceEEEc-CCC-e---EEEEeecC--CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520          138 -----NGLHKVS-EDG-V---ENFLSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (370)
Q Consensus       138 -----~gi~~~~-~~g-~---~~~~~~~~--g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  205 (370)
                           ..|.+++ .++ +   +.+....+  ....+.+++|++++||+|||++.....  .....+  .....++|+|++
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~--~~~~~d--~~~~~g~I~ri~  175 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE--RELAQD--LASLGGKILRLT  175 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC--GGGGGC--TTCSSSEEEEEC
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC--CccccC--CCCCceEEEEEc
Confidence                 4688888 333 2   23333223  234567899999999999999753110  000000  123458999999


Q ss_pred             CCC-------------CeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          206 PSS-------------NITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       206 ~~t-------------~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      +++             ...+++..++.+|+|+++++++..||+++.+.
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCC
Confidence            985             24456777889999999999433499999765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.74  E-value=1.5e-15  Score=143.42  Aligned_cols=225  Identities=12%  Similarity=0.108  Sum_probs=165.7

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--eEEEEee
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~~~~~~~  154 (370)
                      -.+.+.++++.|+++.. ..|.+++ ++ ..+.+......|. ++++|+ ++.||++|.. +.|++++.+|  .+.+.. 
T Consensus        79 ~~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~~~~~~~~~-gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-  155 (386)
T 3v65_B           79 RSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLLLNNLENAI-ALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-  155 (386)
T ss_dssp             SCEEECSSCCEEEEECB-SCEEEECTTSCCCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-
T ss_pred             CeECCccccceeEeecC-ccceeeccCCCcEEEEecCCCccE-EEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-
Confidence            34556667778888875 4699999 44 5666666677899 999994 6789999976 5688998655  444432 


Q ss_pred             cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~  232 (370)
                         ..+..|++|++|+ +|+||++|..                 .++|.++++++...+.+. .++..|+++++++++..
T Consensus       156 ---~~~~~p~glavd~~~g~lY~~d~~-----------------~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~  215 (386)
T 3v65_B          156 ---TGLESPGGLAVDWVHDKLYWTDSG-----------------TSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGT  215 (386)
T ss_dssp             ---SSCSCCCCEEEETTTTEEEEEETT-----------------TTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTE
T ss_pred             ---CCCCCccEEEEEeCCCeEEEEcCC-----------------CCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCe
Confidence               1235789999996 6799999873                 468999998866555444 56789999999998888


Q ss_pred             EEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccc
Q 017520          233 VVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  308 (370)
Q Consensus       233 l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (370)
                      |||++.+.   |+++++++..   ...+....-..|++|++|+ +++||++....                         
T Consensus       216 ly~td~~~~~~I~r~~~dG~~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~-------------------------  267 (386)
T 3v65_B          216 IYWTDWGNTPRIEASSMDGSG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKH-------------------------  267 (386)
T ss_dssp             EEEEECSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEEGGGTEEEEEETTT-------------------------
T ss_pred             EEEeccCCCCEEEEEeCCCCC---cEEEEECCCCCeeeEEEeCCCCEEEEEECCC-------------------------
Confidence            99999764   9999988742   2333322234699999994 67899998664                         


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          309 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       309 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                               +.|.+++.+|...+.+....   ......+...+++||+....++.|.+++
T Consensus       268 ---------~~I~~~d~dG~~~~~~~~~~---~~~P~giav~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          268 ---------HVIERANLDGSHRKAVISQG---LPHPFAITVFEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             ---------TEEEEECTTSCSCEEEECSS---CSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ---------CEEEEEeCCCCeeEEEEECC---CCCceEEEEECCEEEEeeCCCCeEEEEE
Confidence                     46899998887655554322   2244555557899999999999999986

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.72  E-value=3.6e-15  Score=133.26  Aligned_cols=216  Identities=11%  Similarity=0.106  Sum_probs=153.9

Q ss_pred             cEEEEecCCeEEEEe-CCeE-------EEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--eEEEEeecCCc
Q 017520           91 VIYTATRDGWIKRLQ-DGTW-------VNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VENFLSYVNGS  158 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~g~~-------~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~~~~~~~~~g~  158 (370)
                      .||+++. +.|++++ +++.       ..+..+...|. ++++|+ ++.||+++.. +.|++++.+|  ...+..    .
T Consensus         3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~-gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~----~   76 (267)
T 1npe_A            3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIR----Q   76 (267)
T ss_dssp             EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEC----T
T ss_pred             EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEE-EEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEE----C
Confidence            5788874 5799999 5532       12233345688 999997 4689999976 4688898655  443322    1


Q ss_pred             ccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEE
Q 017520          159 KLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       159 ~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~  236 (370)
                      .+..|++|++|++ |+||++|.                 ..++|.+++.++...+.+. .++..|++++++++++.+||+
T Consensus        77 ~~~~p~~ia~d~~~~~lyv~d~-----------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~  139 (267)
T 1npe_A           77 DLGSPEGIALDHLGRTIFWTDS-----------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWT  139 (267)
T ss_dssp             TCCCEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEE
T ss_pred             CCCCccEEEEEecCCeEEEEEC-----------------CCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEE
Confidence            2357899999985 68999986                 3468999998865444443 456789999999987789999


Q ss_pred             eCC---c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccc
Q 017520          237 ESW---K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQF  311 (370)
Q Consensus       237 ~~~---~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (370)
                      +..   + |+++++++..   .+.+.......|.++++|++| ++|++....                            
T Consensus       140 ~~~~~~~~I~~~~~dg~~---~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~----------------------------  188 (267)
T 1npe_A          140 DWNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT----------------------------  188 (267)
T ss_dssp             ECCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTT----------------------------
T ss_pred             ECCCCCcEEEEEecCCCC---cEEEEECCCCCCcEEEEcCCCCEEEEEECCC----------------------------
Confidence            975   3 9999987642   222322223469999999864 799998764                            


Q ss_pred             ccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          312 ITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       312 ~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                            +.|.+++.+|.....+.. .+   .....+...+++||++...++.|.+++.+
T Consensus       189 ------~~I~~~~~~g~~~~~~~~-~~---~~P~gi~~d~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          189 ------HRAECLNPAQPGRRKVLE-GL---QYPFAVTSYGKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             ------TEEEEEETTEEEEEEEEE-CC---CSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred             ------CEEEEEecCCCceEEEec-CC---CCceEEEEeCCEEEEEECCCCeEEEEeCC
Confidence                  458999988766555433 11   23345555689999999999999999863

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.72  E-value=4.3e-15  Score=136.44  Aligned_cols=218  Identities=11%  Similarity=0.139  Sum_probs=156.9

Q ss_pred             cEEEEecCCeEEEEe-C-CeEEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC------eEEEEeecCCccc
Q 017520           91 VIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSYVNGSKL  160 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~-g~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g------~~~~~~~~~g~~~  160 (370)
                      .|++++.+ .|.+++ + ++..........|. ++++|+ ++.||++|.. +.|++++.+|      .+.+..    ..+
T Consensus         3 ~ll~~~~~-~I~~i~~~~~~~~~~~~~~~~p~-g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~----~~~   76 (316)
T 1ijq_A            3 YLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS----RDI   76 (316)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC----SSC
T ss_pred             EEEEECCC-eEEEEECCCcceEehhcCCCceE-EEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEe----CCC
Confidence            46777754 599999 4 44555556677899 999996 4689999976 5688888432      222221    124


Q ss_pred             ccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeC
Q 017520          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       161 ~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      ..|.+|++|+ +|+||++|.                 ..++|.++++++...+.+. ..+..|++++++++++.+||++.
T Consensus        77 ~~p~glavd~~~~~ly~~d~-----------------~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~  139 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcCEEEEeecCCeEEEEEC-----------------CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEcc
Confidence            5789999996 679999986                 3478999999866655554 46789999999998888999997


Q ss_pred             C--c-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520          239 W--K-CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  314 (370)
Q Consensus       239 ~--~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
                      +  + |++++++|.   ..+.+....-..|++|++|+ +++||++....                               
T Consensus       140 ~~~~~I~~~~~dG~---~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~-------------------------------  185 (316)
T 1ijq_A          140 GTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-------------------------------  185 (316)
T ss_dssp             SSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT-------------------------------
T ss_pred             CCCCeEEEEcCCCC---CeEEEEECCCCCceEEEEeccCCEEEEEECCC-------------------------------
Confidence            5  3 999998874   23333322234699999996 56899998654                               


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          315 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       315 ~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                         +.|.+++.+|+..+.+....+. ......+...+++||+....++.|.+++.
T Consensus       186 ---~~I~~~d~dg~~~~~~~~~~~~-~~~P~giav~~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          186 ---HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             ---TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---CeEEEEecCCCceEEEeecCCc-cCCcEEEEEECCEEEEEECCCCeEEEEeC
Confidence               3588999888766665432222 23345555578999999999999999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=2.3e-16  Score=145.59  Aligned_cols=188  Identities=11%  Similarity=0.108  Sum_probs=130.1

Q ss_pred             CCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe-CCe---EEEEEe---------cCCCceeceEEcC-CCcEEEEeC--C
Q 017520           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT---WVNWKF---------IDSQTLVGLTSTK-EGHLIICDN--A  137 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~---~~~~~~---------~~~~p~~gl~~d~-~G~L~v~~~--~  137 (370)
                      .+.+..|.+|++|++|++|+++ .+++|.+++ +|+   +..+..         ....|. ++++++ +|+|||++.  .
T Consensus        87 ~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~lyv~d~~~~  165 (329)
T 3fvz_A           87 KNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAVFVSDGYCN  165 (329)
T ss_dssp             TTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCEEEEECSSC
T ss_pred             CCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeEEEEeCCCC
Confidence            4557789999999999999998 578999999 665   333321         123689 999998 899999995  4


Q ss_pred             CceEEEcCCC--eEEEEeecC-----CcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC
Q 017520          138 NGLHKVSEDG--VENFLSYVN-----GSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (370)
Q Consensus       138 ~gi~~~~~~g--~~~~~~~~~-----g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~  209 (370)
                      +.|.+++++|  +..+.....     ...+..|++|++|++ |+||+++.                 .+++|.+||++++
T Consensus       166 ~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~-----------------~~~~I~~~~~~~G  228 (329)
T 3fvz_A          166 SRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR-----------------ENGRIQCFKTDTK  228 (329)
T ss_dssp             CEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTTC
T ss_pred             CeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-----------------CCCEEEEEECCCC
Confidence            6788999777  343322211     124567999999998 89999987                 4578999999866


Q ss_pred             eEEEEecC---CCCccceEEcc------CCCEEEEEeCCc--EEEEEeCCCCCCceeeec--cCCCCCCCceeECCCCCE
Q 017520          210 ITTLVADG---FYFANGVALSR------DEDYVVVCESWK--CRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       210 ~~~~~~~~---~~~p~gi~~~~------dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~~G~l  276 (370)
                      +.......   ...+.+++++|      +|+ +|+++...  |++++....+.  ...+.  ......|.++++|++|++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~-~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~l  305 (329)
T 3fvz_A          229 EFVREIKHASFGRNVFAISYIPGFLFAVNGK-PYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTV  305 (329)
T ss_dssp             CEEEEECCTTTTTCEEEEEEETTEEEEEECC-CCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEE
T ss_pred             cEEEEEeccccCCCcceeeecCCEEEEeCCC-EEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCE
Confidence            55433211   12334444444      666 66666555  88888654321  22221  122345899999999999


Q ss_pred             EEEEecC
Q 017520          277 WIAIIKL  283 (370)
Q Consensus       277 wv~~~~~  283 (370)
                      ||+....
T Consensus       306 yvad~~~  312 (329)
T 3fvz_A          306 YIGDAHT  312 (329)
T ss_dssp             EEEESSS
T ss_pred             EEEECCC
Confidence            9998764

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=4.6e-16  Score=140.12  Aligned_cols=181  Identities=14%  Similarity=0.250  Sum_probs=132.1

Q ss_pred             CcCCCcceEE-cCCCcEEEEec--CCeEEEEe-CCeEEEEEe--cCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC--
Q 017520           77 SVNHPEDASM-DKNGVIYTATR--DGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--  147 (370)
Q Consensus        77 ~~~~P~~i~~-d~~G~l~v~~~--~g~I~~~~-~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g--  147 (370)
                      .+..|.++++ +++|++|+++.  ++.|.+++ +|+......  ....|. +++++++|++|+++.. +.|++++.+|  
T Consensus        75 ~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~-~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  153 (286)
T 1q7f_A           75 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNV  153 (286)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccCceEEEEEcCCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCCce-EEEEeCCCCEEEEECCCCEEEEEcCCCCE
Confidence            3567999999 58999999983  78999999 776543322  234688 9999999999999865 5689998767  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVA  225 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~  225 (370)
                      +..+..   ...+..|++|+++++|++|+++.                 ..++|++||+++..+..+...  +..|.+++
T Consensus       154 ~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~-----------------~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~  213 (286)
T 1q7f_A          154 LHKFGC---SKHLEFPNGVVVNDKQEIFISDN-----------------RAHCVKVFNYEGQYLRQIGGEGITNYPIGVG  213 (286)
T ss_dssp             EEEEEC---TTTCSSEEEEEECSSSEEEEEEG-----------------GGTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             EEEeCC---CCccCCcEEEEECCCCCEEEEEC-----------------CCCEEEEEcCCCCEEEEEccCCccCCCcEEE
Confidence            333321   12245789999999999999975                 347899999976555544322  46899999


Q ss_pred             EccCCCEEEEEeCC---cEEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCEEEEEec
Q 017520          226 LSRDEDYVVVCESW---KCRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       226 ~~~dg~~l~v~~~~---~l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++++|+ +|+++..   .|.+|+.++..   ...+... ....|.+++++++|++|++...
T Consensus       214 ~d~~G~-l~v~~~~~~~~i~~~~~~g~~---~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~  270 (286)
T 1q7f_A          214 INSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASKD  270 (286)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEETT
T ss_pred             ECCCCC-EEEEeCCCCEEEEEECCCCCE---EEEEcccCCCCcceeEEECCCCcEEEECCC
Confidence            999997 8888854   39999865532   2222211 1224778999999999999644

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.70  E-value=4.5e-15  Score=140.81  Aligned_cols=222  Identities=10%  Similarity=0.134  Sum_probs=161.0

Q ss_pred             EcCCCcEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC------eEEEEeec
Q 017520           86 MDKNGVIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSYV  155 (370)
Q Consensus        86 ~d~~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g------~~~~~~~~  155 (370)
                      .++...|++++. ..|.+++ ++ ....+......|. +|++|+ ++.||++|.. +.|++++.+|      ...+..  
T Consensus        80 ~~~~~~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~-~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~--  155 (400)
T 3p5b_L           80 VGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--  155 (400)
T ss_dssp             STTSCEEEEEET-TEEEEECTTSCSCEEEECSCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC--
T ss_pred             ccccceeEEecc-ceeEEEccCCcceeEeccccCcce-EEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe--
Confidence            344556777774 5799999 44 4555566667899 999996 6789999976 5688888443      222222  


Q ss_pred             CCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEE
Q 017520          156 NGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYV  233 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l  233 (370)
                        ..+..|.+|++|. .++||++|.                 ..++|.+++++++..+.+. ..+..|++|++++.+..|
T Consensus       156 --~~~~~p~glavD~~~~~lY~~d~-----------------~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~l  216 (400)
T 3p5b_L          156 --RDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFM  216 (400)
T ss_dssp             --SSCSCEEEEEEETTTTEEEEEET-----------------TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEE
T ss_pred             --CCCCCcccEEEEecCCceEEEEC-----------------CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeE
Confidence              2245789999997 789999987                 3578999999877665554 478889999999988889


Q ss_pred             EEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccc
Q 017520          234 VVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  309 (370)
Q Consensus       234 ~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (370)
                      ||++.+.   |++++++|..   ...+....-..|.+|++|. +++||++....                          
T Consensus       217 y~td~~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glavd~~~~~lY~aD~~~--------------------------  267 (400)
T 3p5b_L          217 YWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL--------------------------  267 (400)
T ss_dssp             EEEECSSSCCEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT--------------------------
T ss_pred             EEEeCCCCCEEEEEeCCCCc---cEEEEECCCCceEEEEEEeCCCEEEEEECCC--------------------------
Confidence            9999653   9999998752   2333322234699999995 56899998654                          


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          310 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       310 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                              ..|.+++.+|...+.+....+. ......+...+++||+....++.|.+++
T Consensus       268 --------~~I~~~d~dG~~~~~~~~~~~~-l~~P~gl~v~~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          268 --------HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             --------TEEEEEETTSCCCEEEEECSST-TSSEEEEEEETTEEEEEESSSCSEEEEE
T ss_pred             --------CEEEEEeCCCCccEEEEeCCCC-CCCCEEEEEeCCEEEEecCCCCeEEEEE
Confidence                    3588999888776666443333 2334455557889999999999999886

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.70  E-value=2.4e-15  Score=150.25  Aligned_cols=185  Identities=14%  Similarity=0.088  Sum_probs=143.7

Q ss_pred             ecCCCcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCe-EEEEEec-CCCceeceEEcC-CCcEEEEeCC-CceEEEcC
Q 017520           73 VGEGSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-WVNWKFI-DSQTLVGLTSTK-EGHLIICDNA-NGLHKVSE  145 (370)
Q Consensus        73 ~~~~~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~-~~~~~~~-~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~  145 (370)
                      ++...+..|.+|++|. +|.||+++ .+++|++++ +|. .+.+... ...|. ||++|. .++||+++.. +.|.+++.
T Consensus        31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~  109 (628)
T 4a0p_A           31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKL  109 (628)
T ss_dssp             CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEec
Confidence            3334467899999995 78999999 678999999 653 4444443 35799 999995 5689999987 46788886


Q ss_pred             CC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc
Q 017520          146 DG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (370)
Q Consensus       146 ~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~  222 (370)
                      +|  .+.+..    ..+..|++|++|| +|.||++|.+                ..++|+++++++...+.+..++..|+
T Consensus       110 dG~~~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~  169 (628)
T 4a0p_A          110 DGQHRQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRAN  169 (628)
T ss_dssp             TSTTCEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEE
T ss_pred             CCCcEEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcc
Confidence            66  445432    2346799999997 7899999863                25799999999887888888899999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||++|++++.|||++...  |.+++++|..   .+.+... ...|.+++++. +++|++....
T Consensus       170 GlalD~~~~~LY~aD~~~~~I~~~d~dG~~---~~v~~~~-l~~P~glav~~-~~ly~tD~~~  227 (628)
T 4a0p_A          170 GLTIDYAKRRLYWTDLDTNLIESSNMLGLN---REVIADD-LPHPFGLTQYQ-DYIYWTDWSR  227 (628)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEEC-CSCEEEEEEET-TEEEEEETTT
T ss_pred             eEEEccccCEEEEEECCCCEEEEEcCCCCc---eEEeecc-CCCceEEEEEC-CEEEEecCCC
Confidence            999999988899999877  9999998752   2334333 34699999987 6899998754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.70  E-value=3.2e-15  Score=141.76  Aligned_cols=181  Identities=13%  Similarity=0.086  Sum_probs=134.7

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC-----eEEEEEe-cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCC
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED  146 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g-----~~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~  146 (370)
                      +..|.+|++|. ++.||+++ .+++|++++ +|     ..+.+.. ....|. ||++|. .++||+++.. +.|.+++.+
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCceEEEECCCCeEEEEeCC
Confidence            67899999995 78999999 678999998 54     2333333 456789 999997 6789999976 568888866


Q ss_pred             C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCcc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFAN  222 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~  222 (370)
                      |  .+.+...    .+..|++|++|+ +|.||++|..                ..++|+++++++...+.+ ..++..|+
T Consensus       190 g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~~~l~~P~  249 (400)
T 3p5b_L          190 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  249 (400)
T ss_dssp             TCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEECSSCSCEE
T ss_pred             CCceEEEEeC----CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEECCCCceE
Confidence            6  4444331    245799999998 6789999863                246899999986655554 35678999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||++|++++.|||+++..  |.+++++|.   ..+.+...  .-..|.+++++. +++|++....
T Consensus       250 glavd~~~~~lY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~l~~P~gl~v~~-~~lywtd~~~  310 (400)
T 3p5b_L          250 GITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  310 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSC---CCEEEEECSSTTSSEEEEEEET-TEEEEEESSS
T ss_pred             EEEEEeCCCEEEEEECCCCEEEEEeCCCC---ccEEEEeCCCCCCCCEEEEEeC-CEEEEecCCC
Confidence            999999888899999876  999999874   23333322  224688999965 4688887654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.70  E-value=1.9e-14  Score=132.65  Aligned_cols=234  Identities=13%  Similarity=0.135  Sum_probs=160.9

Q ss_pred             CCCcceEEcCCC-cEEEEec-------CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-C
Q 017520           79 NHPEDASMDKNG-VIYTATR-------DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-E  145 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~~-------~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~  145 (370)
                      .+|.+++++++| .+|+++.       ++.|+.++  +++..........|. +++++++|+ +|+++.. +.|..++ .
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPF-GATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCC-SEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcc-eEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            378899999987 6888873       56799999  666555555566788 999999997 8998875 4688888 5


Q ss_pred             CC-e-EEEEeecCCc-----ccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-
Q 017520          146 DG-V-ENFLSYVNGS-----KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-  216 (370)
Q Consensus       146 ~g-~-~~~~~~~~g~-----~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-  216 (370)
                      ++ . ..+... .+.     ....+++++++++|+ +|+++..                ..+.|+++|.++++...... 
T Consensus       120 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~----------------~~~~i~~~d~~~~~~~~~~~~  182 (353)
T 3vgz_A          120 TGEVKGRLVLD-DRKRTEEVRPLQPRELVADDATNTVYISGIG----------------KESVIWVVDGGNIKLKTAIQN  182 (353)
T ss_dssp             TCCEEEEEESC-CCCCCSSCCCCEEEEEEEETTTTEEEEEEES----------------SSCEEEEEETTTTEEEEEECC
T ss_pred             CCeeEEEEecC-CCccccccCCCCCceEEECCCCCEEEEEecC----------------CCceEEEEcCCCCceEEEecC
Confidence            66 3 333211 111     112367899999985 8888632                34789999999887765555 


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCCCCCCceeECCCCC-EEEEEecCchhHHHhhhc
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNS  293 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~  293 (370)
                      ....+.++++++||+.+|+++..+ |.+||+.+.+......... .....+.+++++++|+ +|++....          
T Consensus       183 ~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------  252 (353)
T 3vgz_A          183 TGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA----------  252 (353)
T ss_dssp             CCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSS----------
T ss_pred             CCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCC----------
Confidence            445689999999999999998877 9999976542211111101 1223456789999997 78876543          


Q ss_pred             chhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEEC-CEEEEEeCCCCeEEEEeC
Q 017520          294 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~~gs~~~~~i~~~~~  369 (370)
                                              +.+..+|. .++.+..+.....     .......+ +.||+++...+.|.++++
T Consensus       253 ------------------------~~v~~~d~~~~~~~~~~~~~~~-----~~~~~s~dg~~l~v~~~~~~~v~~~d~  301 (353)
T 3vgz_A          253 ------------------------AEVLVVDTRNGNILAKVAAPES-----LAVLFNPARNEAYVTHRQAGKVSVIDA  301 (353)
T ss_dssp             ------------------------SEEEEEETTTCCEEEEEECSSC-----CCEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ------------------------CEEEEEECCCCcEEEEEEcCCC-----ceEEECCCCCEEEEEECCCCeEEEEEC
Confidence                                    45788885 5787777765332     12222233 569999888888888875

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.68  E-value=3.9e-14  Score=129.72  Aligned_cols=210  Identities=16%  Similarity=0.192  Sum_probs=145.3

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe-CCeEEEEEec-CCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeecCCccc
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFI-DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKL  160 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~-~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~~g~~~  160 (370)
                      .+++ +|.||+++.+|.|++++ +|+....... ..... .++++++|+||++...+++++++.+| ....... .   .
T Consensus       103 ~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~-~---~  176 (330)
T 3hxj_A          103 FTIF-EDILYVTSMDGHLYAINTDGTEKWRFKTKKAIYA-TPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKT-N---D  176 (330)
T ss_dssp             EEEE-TTEEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTSCEEEECTTSEEEEECTTSCEEEEEEC-S---S
T ss_pred             ceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcCCCceee-eeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEec-C---C
Confidence            3444 88999999889999999 7554332222 22345 78888899999998778999999557 3322221 1   2


Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      ..+..+++|++|++|++.                    ++|+++|.++...............++++++|+ +|++...+
T Consensus       177 ~~~~~~~~d~~g~l~v~t--------------------~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~  235 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS--------------------DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDG  235 (330)
T ss_dssp             CCCSCCEECTTCCEEEES--------------------SSEEEECTTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTT
T ss_pred             CceeeeEEcCCCEEEEEe--------------------CEEEEECCCCcEEEEEccCCcceeceEECCCCe-EEEEcCCC
Confidence            356678999999999993                    579999954333333333334567888999987 88887755


Q ss_pred             -EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceE
Q 017520          241 -CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAH  319 (370)
Q Consensus       241 -l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  319 (370)
                       |++++.++.   ....+. .....+..+.+|++|++|+++..+                                   .
T Consensus       236 gl~~~~~~g~---~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~g-----------------------------------g  276 (330)
T 3hxj_A          236 HLYAINPDGT---EKWRFK-TGKRIESSPVIGNTDTIYFGSYDG-----------------------------------H  276 (330)
T ss_dssp             EEEEECTTSC---EEEEEE-CSSCCCSCCEECTTSCEEEECTTC-----------------------------------E
T ss_pred             eEEEECCCCC---EeEEee-CCCCccccceEcCCCeEEEecCCC-----------------------------------C
Confidence             999975443   222222 222345668889999999998763                                   5


Q ss_pred             EEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCe
Q 017520          320 LIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNF  363 (370)
Q Consensus       320 v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~  363 (370)
                      ++++|++|+.+..+..+..    .+..+.. .+|+||+|+.++-.
T Consensus       277 l~~~d~~g~~~~~~~~~~~----~~~~~~~d~~g~l~~gt~~G~~  317 (330)
T 3hxj_A          277 LYAINPDGTEKWNFETGSW----IIATPVIDENGTIYFGTRNGKF  317 (330)
T ss_dssp             EEEECTTSCEEEEEECSSC----CCSCCEECTTCCEEEECTTSCE
T ss_pred             EEEECCCCcEEEEEEcCCc----cccceEEcCCCEEEEEcCCCeE
Confidence            8999999999988876432    2344444 67999999988753

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.67  E-value=4.6e-15  Score=152.07  Aligned_cols=216  Identities=15%  Similarity=0.206  Sum_probs=145.3

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEec-------CCCceeceEEcCCCcEEEEeCCCceEEEcCC-----
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-------DSQTLVGLTSTKEGHLIICDNANGLHKVSED-----  146 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~-------~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~-----  146 (370)
                      ..+|+.|++|+||+|+ +++|++++  +++++.+...       ..... ++..|++|+|||+...+||+++++.     
T Consensus       375 v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~  452 (758)
T 3ott_A          375 IRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQLWISTCLGGIFVVDKHKLMQS  452 (758)
T ss_dssp             EEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEEEEEESSSCEEEEEHHHHHHC
T ss_pred             eEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCEEEEECCCceEEEcccccccc
Confidence            4678999999999999 56899999  6777766421       12356 7899999999999877899999832     


Q ss_pred             --C-eE--EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-C--
Q 017520          147 --G-VE--NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-F--  218 (370)
Q Consensus       147 --g-~~--~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~--  218 (370)
                        + +.  .......+.+...+..|..|++|+||+...                 ..++|+++|+++++++.+... +  
T Consensus       453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~-----------------t~~Gl~~~d~~~~~~~~~~~~~~~~  515 (758)
T 3ott_A          453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLY-----------------NNKGIDKINPRTREVTKLFADELTG  515 (758)
T ss_dssp             CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEET-----------------TCSSEEEEETTTTEEEEECTTTSCG
T ss_pred             CCcceecccccccccccccceeeeEEEcCCCCEEEEcc-----------------CCCCcEEEeCCCCceEEecCCCcCC
Confidence              1 11  111112233334678899999999999221                 225799999998888766422 1  


Q ss_pred             -CCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCC----ceeECCCCCEEEEEecCchhHHHhhhc
Q 017520          219 -YFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPD----NINLAPDGTFWIAIIKLDARRMKILNS  293 (370)
Q Consensus       219 -~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~----~i~~d~~G~lwv~~~~~~~~~~~~~~~  293 (370)
                       ..++.+..+.+|+ +|++...+|.+|++++.+.   +.+.  ..++|.    .+..+ +|+||+++..+          
T Consensus       516 ~~~~~~i~~d~~g~-lWigt~~Gl~~~~~~~~~~---~~~~--~~gl~~~~i~~i~~~-~g~lWi~t~~G----------  578 (758)
T 3ott_A          516 EKSPNYLLCDEDGL-LWVGFHGGVMRINPKDESQ---QSIS--FGSFSNNEILSMTCV-KNSIWVSTTNG----------  578 (758)
T ss_dssp             GGCEEEEEECTTSC-EEEEETTEEEEECC--CCC---CBCC--CCC---CCEEEEEEE-TTEEEEEESSC----------
T ss_pred             CcccceEEECCCCC-EEEEecCceEEEecCCCce---EEec--ccCCCccceEEEEEC-CCCEEEECCCC----------
Confidence             2456788888998 8888766699999765432   2221  123333    35555 89999999776          


Q ss_pred             chhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCC
Q 017520          294 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTS  361 (370)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~  361 (370)
                                                +.++|++...+..|..++.. +.  ..+.. .+|+||+|+.+|
T Consensus       579 --------------------------l~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~G~l~fG~~~G  618 (758)
T 3ott_A          579 --------------------------LWIIDRKTMDARQQNMTNKR-FT--SLLFDPKEDCVYLGGADG  618 (758)
T ss_dssp             --------------------------EEEEETTTCCEEEC--CCCC-CS--EEEEETTTTEEEEECBSE
T ss_pred             --------------------------eEEEcCCCceeEEecCCCCc-ee--eeEEECCCCcEEEecCCc
Confidence                                      89999987777777555443 22  23333 379999999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.67  E-value=1.9e-14  Score=146.76  Aligned_cols=226  Identities=10%  Similarity=0.122  Sum_probs=163.5

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe-C-CeEEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC------eEEE
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENF  151 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~-~-g~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g------~~~~  151 (370)
                      ...+++....|++++.. .|.+++ + .....+......|. +|+++. ++.||+++.. +.|++++.+|      ...+
T Consensus       388 ~C~~~~~~p~Ll~an~~-~Ir~i~l~~~~~~~l~~~~~~~~-gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~v  465 (791)
T 3m0c_C          388 ACKAVGSIAYLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV  465 (791)
T ss_dssp             CCEETTSCCEEEEECBS-SEEEECTTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEE
T ss_pred             eeeeccccccccccccc-ceeEeeccCCcceeeecCCCceE-EEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEE
Confidence            34455556677887754 588888 4 45556666667888 999996 6789999987 4588887443      1222


Q ss_pred             EeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccC
Q 017520          152 LSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRD  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~d  229 (370)
                      +    ...+..|.+|++|..+ +||++|.                 ..++|.++++++...+++. ..+..|++|++++.
T Consensus       466 i----~~~l~~P~GLAvD~~~~~LY~tD~-----------------~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~  524 (791)
T 3m0c_C          466 I----SRDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV  524 (791)
T ss_dssp             E----CSSCSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred             E----ecCCCCcceeeeeecCCcEEEEec-----------------CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecC
Confidence            2    1235688999999765 8999997                 3578999999877666554 57788999999998


Q ss_pred             CCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeEC-CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCC
Q 017520          230 EDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYP  305 (370)
Q Consensus       230 g~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (370)
                      +..|||++.+.   |.+++++|.   ....+....-..|.+|++| .+|+||++....                      
T Consensus       525 ~g~LYwtD~g~~~~I~~~~~dG~---~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~----------------------  579 (791)
T 3m0c_C          525 HGFMYWTDWGTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL----------------------  579 (791)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT----------------------
T ss_pred             CCCEEEecCCCCCeEEEEecCCC---ceEEEEeCCCCCceEEEEecCCCeEEEEeCCC----------------------
Confidence            77899999754   999998874   2333333333469999999 567899998654                      


Q ss_pred             ccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          306 KLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       306 ~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                                  ..|.+++.+|.....+....+. ......+...+++||+.....+.|.+++
T Consensus       580 ------------~~I~~~d~dG~~~~~v~~~~~~-l~~P~glav~~~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          580 ------------HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             ------------TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEE
T ss_pred             ------------CcEEEEecCCCceEEEecCCCc-cCCCCEEEEeCCEEEEEECCCCEEEEEe
Confidence                        3588899988776666543333 2333455557889999999999999886

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.66  E-value=2e-14  Score=130.15  Aligned_cols=188  Identities=13%  Similarity=0.135  Sum_probs=128.1

Q ss_pred             CCCcceEEcC-CCcEEEEe-cCCeEEEEe-C-CeEEEEEecC----C----CceeceEE---cCCCcEEEE-eC------
Q 017520           79 NHPEDASMDK-NGVIYTAT-RDGWIKRLQ-D-GTWVNWKFID----S----QTLVGLTS---TKEGHLIIC-DN------  136 (370)
Q Consensus        79 ~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~-g~~~~~~~~~----~----~p~~gl~~---d~~G~L~v~-~~------  136 (370)
                      ..||++..|+ +|.+|+++ .+|+|.+++ + +..+......    +    .+. ||.+   |++|+|||+ +.      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEcccccccc
Confidence            5799999985 88999999 789999999 4 5544442221    1    367 9999   789999994 41      


Q ss_pred             -------CCceEEEc-C---CC-eEEEEee--cC-------CcccccccceEEcCCCcEEEEeCCCCCCCccceeccccc
Q 017520          137 -------ANGLHKVS-E---DG-VENFLSY--VN-------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG  195 (370)
Q Consensus       137 -------~~gi~~~~-~---~g-~~~~~~~--~~-------g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~  195 (370)
                             ...+++++ +   ++ ....+..  ..       +.....+|+|++|++|++||+++.               
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~---------------  156 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL---------------  156 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE---------------
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC---------------
Confidence                   24689999 5   46 3333331  11       113346899999999999999863               


Q ss_pred             CCCceEEEEeCCCCeEEEEec------CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeee--cc-CCCCCC
Q 017520          196 KPHGQLLKYDPSSNITTLVAD------GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETF--AE-NLPGAP  265 (370)
Q Consensus       196 ~~~g~l~~~d~~t~~~~~~~~------~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~--~~-~~~g~p  265 (370)
                       ..+.|+|+++++.....+..      ...+++||+++|||+.|++.++.+ |++||+..+.......-  .. .....+
T Consensus       157 -~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~  235 (334)
T 2p9w_A          157 -GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGT  235 (334)
T ss_dssp             -SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTE
T ss_pred             -CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCc
Confidence             21679999999665554321      234578999999999999999966 99999874321011110  00 012247


Q ss_pred             Cce-eECCCCCE-EEEEecC
Q 017520          266 DNI-NLAPDGTF-WIAIIKL  283 (370)
Q Consensus       266 ~~i-~~d~~G~l-wv~~~~~  283 (370)
                      ++| ....+|++ +|+....
T Consensus       236 dgilp~~~~G~vllV~~~~~  255 (334)
T 2p9w_A          236 EKIVTVPVGNESVLVGARAP  255 (334)
T ss_dssp             EEEEEEEETTEEEEEEEETT
T ss_pred             ccccccccCCEEEEEEcCCC
Confidence            885 66778987 6666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.66  E-value=4.4e-15  Score=136.52  Aligned_cols=176  Identities=16%  Similarity=0.113  Sum_probs=125.0

Q ss_pred             CCCcceEEcC-CCcEEEEecCCeEEEEe-C-CeEEEEEe-----cCCCceeceEEcC-CCcEEEEeCC------------
Q 017520           79 NHPEDASMDK-NGVIYTATRDGWIKRLQ-D-GTWVNWKF-----IDSQTLVGLTSTK-EGHLIICDNA------------  137 (370)
Q Consensus        79 ~~P~~i~~d~-~G~l~v~~~~g~I~~~~-~-g~~~~~~~-----~~~~p~~gl~~d~-~G~L~v~~~~------------  137 (370)
                      ..|.+|++|+ +|+||+++..++|.+++ + ++++.+..     ....|+ ++++++ +|+||+++..            
T Consensus        80 ~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~-~i~~d~~~G~l~v~d~~~~~~~~~~~~~~  158 (322)
T 2fp8_A           80 GRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLY-AVTVDQRTGIVYFTDVSTLYDDRGVQQIM  158 (322)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEE-EEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred             CCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccc-eEEEecCCCEEEEECCcccccccccceeh
Confidence            4689999996 89999999777799999 4 55555532     124688 999999 9999999854            


Q ss_pred             ------CceEEEcC-CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC
Q 017520          138 ------NGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (370)
Q Consensus       138 ------~gi~~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  208 (370)
                            .+++++++ ++ ++.+...     +..+++|+++++|+ ||+++.                 ..++|++|+.++
T Consensus       159 ~~~~~~g~v~~~d~~~~~~~~~~~~-----~~~p~gia~~~dg~~lyv~d~-----------------~~~~I~~~~~~~  216 (322)
T 2fp8_A          159 DTSDKTGRLIKYDPSTKETTLLLKE-----LHVPGGAEVSADSSFVLVAEF-----------------LSHQIVKYWLEG  216 (322)
T ss_dssp             HHTCCCEEEEEEETTTTEEEEEEEE-----ESCCCEEEECTTSSEEEEEEG-----------------GGTEEEEEESSS
T ss_pred             cccCCCceEEEEeCCCCEEEEeccC-----CccCcceEECCCCCEEEEEeC-----------------CCCeEEEEECCC
Confidence                  35888984 46 5544322     35789999999986 999986                 346899999874


Q ss_pred             ---CeEEEEecCCCCccceEEccCCCEEEEEeCC-----------c-EEEEEeCCCCCCceeeeccC--C-CCCCCceeE
Q 017520          209 ---NITTLVADGFYFANGVALSRDEDYVVVCESW-----------K-CRKYWLKGERKGKLETFAEN--L-PGAPDNINL  270 (370)
Q Consensus       209 ---~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~-----------~-l~~~~~~~~~~~~~~~~~~~--~-~g~p~~i~~  270 (370)
                         +..+.+.. +..|.|++++++|+ +|+++..           + |.+|+.++..   ...+...  . ...+..++.
T Consensus       217 ~~~~~~~~~~~-~~gP~gi~~d~~G~-l~va~~~~~~~~~~~~~~~~v~~~d~~G~~---~~~~~~~~g~~~~~~~~~~~  291 (322)
T 2fp8_A          217 PKKGTAEVLVK-IPNPGNIKRNADGH-FWVSSSEELDGNMHGRVDPKGIKFDEFGNI---LEVIPLPPPFAGEHFEQIQE  291 (322)
T ss_dssp             TTTTCEEEEEE-CSSEEEEEECTTSC-EEEEEEEETTSSTTSCEEEEEEEECTTSCE---EEEEECCTTTTTSCCCEEEE
T ss_pred             CcCCccceEEe-CCCCCCeEECCCCC-EEEEecCcccccccCCCccEEEEECCCCCE---EEEEECCCCCccccceEEEE
Confidence               33444433 22399999999998 8999865           3 8999876532   2222211  1 124666666


Q ss_pred             CCCCCEEEEEecC
Q 017520          271 APDGTFWIAIIKL  283 (370)
Q Consensus       271 d~~G~lwv~~~~~  283 (370)
                       .+|+|||++...
T Consensus       292 -~~g~L~v~~~~~  303 (322)
T 2fp8_A          292 -HDGLLYIGTLFH  303 (322)
T ss_dssp             -ETTEEEEECSSC
T ss_pred             -eCCEEEEeecCC
Confidence             478999997554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.66  E-value=3.2e-14  Score=130.66  Aligned_cols=218  Identities=11%  Similarity=0.073  Sum_probs=156.4

Q ss_pred             CCcEEEEecCCeEEEEe-CCe---EEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--e-EEEEeecCCcc
Q 017520           89 NGVIYTATRDGWIKRLQ-DGT---WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--V-ENFLSYVNGSK  159 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~-~g~---~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~-~~~~~~~~g~~  159 (370)
                      +..|++++. ..|.+++ ++.   ..........+. ++.+++ ++.||++|.. +.|++++.+|  . +.+...    .
T Consensus         4 ~p~ll~~~~-~~I~~i~l~~~~~~~~~~~~~~~~~~-~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----~   77 (318)
T 3sov_A            4 APLLLYANR-RDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----G   77 (318)
T ss_dssp             CCEEEEECE-EEEEEEETTCTTSCCEEEEEEEEEEE-EEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----C
T ss_pred             ccEEEEEcc-CeEEEEECCCCceEEEEEecCCCccE-EEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----C
Confidence            346778774 4699999 543   333333445677 888986 5789999977 4688888554  2 222221    2


Q ss_pred             cccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEe
Q 017520          160 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       160 ~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      +..|.++++|+ +|+||++|.                 ..++|.++++++...+.+. ..+..|+++++++.+..|||++
T Consensus        78 l~~p~glavd~~~g~ly~~d~-----------------~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td  140 (318)
T 3sov_A           78 LLSPDGLACDWLGEKLYWTDS-----------------ETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTD  140 (318)
T ss_dssp             CSCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEE
T ss_pred             CCCccEEEEEcCCCeEEEEEC-----------------CCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEe
Confidence            35789999996 679999987                 3478999999866655554 6788999999999877899999


Q ss_pred             CC--c-EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccccccc
Q 017520          238 SW--K-CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFIT  313 (370)
Q Consensus       238 ~~--~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
                      .+  . |++++++|..   .+.+....-..|++|++|+ +++||++....                              
T Consensus       141 ~~~~~~I~r~~~dG~~---~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~------------------------------  187 (318)
T 3sov_A          141 WGEVPKIERAGMDGSS---RFIIINSEIYWPNGLTLDYEEQKLYWADAKL------------------------------  187 (318)
T ss_dssp             CSSSCEEEEEETTSCS---CEEEECSSCSCEEEEEEETTTTEEEEEETTT------------------------------
T ss_pred             cCCCCEEEEEEcCCCC---eEEEEECCCCCccEEEEeccCCEEEEEECCC------------------------------
Confidence            64  3 9999988742   2333322234699999997 66899998654                              


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          314 LGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       314 ~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                          +.|.+++.+|+..+.+....   ......+...++.||.....+..|.+++.
T Consensus       188 ----~~I~~~d~dG~~~~~~~~~~---~~~P~glav~~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          188 ----NFIHKSNLDGTNRQAVVKGS---LPHPFALTLFEDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             ----TEEEEEETTSCSCEEEECSC---CSCEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ----CEEEEEcCCCCceEEEecCC---CCCceEEEEeCCEEEEEecCCCeEEEEEC
Confidence                46889998887666655422   23445555578899999999999999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.66  E-value=6.5e-15  Score=147.00  Aligned_cols=182  Identities=16%  Similarity=0.175  Sum_probs=133.1

Q ss_pred             CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCe--EEEEEe-cCCCceeceEEcC-CCcEEEEeCCC-ceEEEcCCC-
Q 017520           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT--WVNWKF-IDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG-  147 (370)
Q Consensus        77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~--~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~~-gi~~~~~~g-  147 (370)
                      .+..|.+|++|. +|.||+++ .+++|++++ +|.  .+.+.. ....|. ||++|. .++||+++... .|.+++.+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            367899999995 78999999 678999999 664  233333 336899 999998 56899999774 577777777 


Q ss_pred             -eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccce
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGV  224 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi  224 (370)
                       .+.+..    ..+..|++|++|+. |.||++|..                ..++|++.++++...+.+. ..+..|+||
T Consensus       117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence             455542    23568999999985 799999863                2468999999866555554 578899999


Q ss_pred             EEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          225 ALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++|++++.|||++...  |++++++|.   ..+.+.......|.+|+++++ ++|++.+..
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~---~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~  233 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGT---NRQAVVKGSLPHPFALTLFED-ILYWTDWST  233 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCC---EEC---------CCCEEESSS-EEEEECTTT
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCC---ccEEEEeCCCCCceEEEEeCC-EEEEecCCC
Confidence            9999888899999876  999998874   233333222346999999977 899998664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.65  E-value=5.2e-14  Score=129.73  Aligned_cols=206  Identities=16%  Similarity=0.216  Sum_probs=136.1

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEec-CCeEEEEe--CCeEEEEEe-------cCCCceeceEEcC----CCcEEEE
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKF-------IDSQTLVGLTSTK----EGHLIIC  134 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~-~g~I~~~~--~g~~~~~~~-------~~~~p~~gl~~d~----~G~L~v~  134 (370)
                      .+++++++ +..|++|+++++|.|||+.. .|+|++++  +|+.+.+..       ..+.++ ||++++    +|.||++
T Consensus        23 ~~~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~lYv~  100 (347)
T 3das_A           23 VLRTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMVYAY  100 (347)
T ss_dssp             EEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEEEEE
T ss_pred             eeEEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEEEEE
Confidence            56677776 89999999999999999997 89999998  465544321       234578 999997    4889997


Q ss_pred             eC---CCceEEEc-CC-----C----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceE
Q 017520          135 DN---ANGLHKVS-ED-----G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       135 ~~---~~gi~~~~-~~-----g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                      ..   ..+|.++. ..     .    .+.+....+....+..+.|++++||.|||+.......    ...--.....|.|
T Consensus       101 yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~----~~~qd~~~~~G~I  176 (347)
T 3das_A          101 FTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT----GLSQDRKSLGGKI  176 (347)
T ss_dssp             EECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG----GGTTCTTCSTTCE
T ss_pred             EecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC----ccccCCCCCCCEE
Confidence            32   34788886 22     1    3444433333345677889999999999996431100    0000011346899


Q ss_pred             EEEeCCCC--------eEEEEecCCCCccceEEccCCCEEEEEeCCc-----EEEEEeCCCCCCce------------ee
Q 017520          202 LKYDPSSN--------ITTLVADGFYFANGVALSRDEDYVVVCESWK-----CRKYWLKGERKGKL------------ET  256 (370)
Q Consensus       202 ~~~d~~t~--------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-----l~~~~~~~~~~~~~------------~~  256 (370)
                      +|+++++.        ..+++..++.+|.|++++++|+ ||+++.+.     |.++. .+...+-.            ..
T Consensus       177 lRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~-~G~nyGwP~~~g~~~~~~~~~P  254 (347)
T 3das_A          177 LRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIK-PGDNYGWPEAEGKGGGSGFHDP  254 (347)
T ss_dssp             EEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEEC-TTCBCCTTTCCSSCCCTTCCCC
T ss_pred             EEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEc-CCCEecCCcccCCCCCccccCC
Confidence            99999855        3567888999999999999987 99999764     44442 22211100            00


Q ss_pred             eccCCC--CCCCceeECCCCCEEEEEecC
Q 017520          257 FAENLP--GAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       257 ~~~~~~--g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ...-.+  .-|.++++. +|.+|++...+
T Consensus       255 ~~~~~~~~~ap~G~~~~-~g~~~~~~l~~  282 (347)
T 3das_A          255 VAQWSTDEASPSGIAYA-EGSVWMAGLRG  282 (347)
T ss_dssp             SEEECTTTCCEEEEEEE-TTEEEEEESTT
T ss_pred             cEecCCCCCCCcceEEE-cCceeeccccC
Confidence            000001  136678876 48899997665

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.65  E-value=3.1e-14  Score=128.85  Aligned_cols=176  Identities=13%  Similarity=0.180  Sum_probs=126.6

Q ss_pred             CCCcceEEcCCCcEEEEec-CCeEEEEe--CCeEEEEEec-----CCCceeceEEcCCCcEEEEeC--------------
Q 017520           79 NHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDN--------------  136 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~-~g~I~~~~--~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~~~--------------  136 (370)
                      ..|.++++|++|++|+++. +++|++++  +|+++.+...     ...|. +++++++|++|+++.              
T Consensus        69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~vtd~~~g~~~~~~~~~~~  147 (296)
T 3e5z_A           69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPN-DVCLAPDGSLWFSDPTYGIDKPEEGYGGE  147 (296)
T ss_dssp             SSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCC-CEEECTTSCEEEEECSHHHHCGGGSSCCC
T ss_pred             CCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCC-CEEECCCCCEEEECCcccccccccccccc
Confidence            5689999999999999984 57899999  7777665421     34577 899999999999753              


Q ss_pred             ----CCceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCe
Q 017520          137 ----ANGLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNI  210 (370)
Q Consensus       137 ----~~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~  210 (370)
                          ..+|++++++| +..+...     ...+++++++++|++++++.                 ..++|++|+.+ ++.
T Consensus       148 ~~~~~~~l~~~~~~g~~~~~~~~-----~~~~~gi~~s~dg~~lv~~~-----------------~~~~i~~~~~~~~g~  205 (296)
T 3e5z_A          148 MELPGRWVFRLAPDGTLSAPIRD-----RVKPNGLAFLPSGNLLVSDT-----------------GDNATHRYCLNARGE  205 (296)
T ss_dssp             CCSSSCEEEEECTTSCEEEEECC-----CSSEEEEEECTTSCEEEEET-----------------TTTEEEEEEECSSSC
T ss_pred             ccCCCcEEEEECCCCCEEEeecC-----CCCCccEEECCCCCEEEEeC-----------------CCCeEEEEEECCCCc
Confidence                24799999657 5544321     34688999999998778765                 34689999875 344


Q ss_pred             E----EEEecCCCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeE-CCCC-CEEEEEecC
Q 017520          211 T----TLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINL-APDG-TFWIAIIKL  283 (370)
Q Consensus       211 ~----~~~~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~-d~~G-~lwv~~~~~  283 (370)
                      .    +.+......|.+++++++|+ +|++..++|.+|+.++.   ....+. ...+ |.++++ +++| .||+++..+
T Consensus       206 ~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~v~~~~~~g~---~~~~~~-~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          206 TEYQGVHFTVEPGKTDGLRVDAGGL-IWASAGDGVHVLTPDGD---ELGRVL-TPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             EEEEEEEECCSSSCCCSEEEBTTSC-EEEEETTEEEEECTTSC---EEEEEE-CSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             CcCCCeEeeCCCCCCCeEEECCCCC-EEEEcCCeEEEECCCCC---EEEEEE-CCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            4    22222345689999999998 89988333999997653   222332 2223 888988 4676 599998654

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=99.64  E-value=6.5e-15  Score=151.00  Aligned_cols=225  Identities=13%  Similarity=0.170  Sum_probs=147.2

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CC---eEEEEEec-------CCCceeceEEcCCCcEEEEeCCCceEEEc-CCC
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DG---TWVNWKFI-------DSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG  147 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g---~~~~~~~~-------~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g  147 (370)
                      ..+|+.|++|+||+|+. +++++++  ++   .++.+...       ...+. +|..|.+|+|||+. ..||.+++ .++
T Consensus       326 v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~lWigt-~~GL~~~~~~~~  402 (758)
T 3ott_A          326 FYSLFRDSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIR-HIYEDKEQQLWIAT-DGSINRYDYATR  402 (758)
T ss_dssp             EEEEEECTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEE-EEEECTTSCEEEEE-TTEEEEEETTTT
T ss_pred             EEEEEEcCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceE-EEEECCCCCEEEEe-CCcHhhcCcCCC
Confidence            35688899999999995 4699998  33   34444311       12356 88999999999998 46999999 556


Q ss_pred             -eEEEEeec-CC-cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC------CeEE---EE-
Q 017520          148 -VENFLSYV-NG-SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS------NITT---LV-  214 (370)
Q Consensus       148 -~~~~~~~~-~g-~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t------~~~~---~~-  214 (370)
                       ++.+.... .+ .+...+..+..|++|+||++...                  ++|+++|+++      +...   .+ 
T Consensus       403 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigT~~------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~  464 (758)
T 3ott_A          403 QFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWISTCL------------------GGIFVVDKHKLMQSTSGQYIAEQNYS  464 (758)
T ss_dssp             EEEEEEEECCC--CBSSSEEEEEECTTSEEEEEESS------------------SCEEEEEHHHHHHCCSSEEECSEEEC
T ss_pred             cEEEeecCCCcCCCCCceEEEEEEcCCCCEEEEECC------------------CceEEEccccccccCCcceecccccc
Confidence             65543211 11 12345778899999999999642                  5799998653      1221   11 


Q ss_pred             -ecCCC--CccceEEccCCCEEEE--EeCCcEEEEEeCCCCCCceeeecc-CCC--CCCCceeECCCCCEEEEEecCchh
Q 017520          215 -ADGFY--FANGVALSRDEDYVVV--CESWKCRKYWLKGERKGKLETFAE-NLP--GAPDNINLAPDGTFWIAIIKLDAR  286 (370)
Q Consensus       215 -~~~~~--~p~gi~~~~dg~~l~v--~~~~~l~~~~~~~~~~~~~~~~~~-~~~--g~p~~i~~d~~G~lwv~~~~~~~~  286 (370)
                       ..++.  ....+..+++|+ +|+  +...+|++|+.+..   ..+.+.. ...  ..+..+..|++|++|+++..+   
T Consensus       465 ~~~~l~~~~i~~i~~d~~g~-lWi~~~t~~Gl~~~d~~~~---~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G---  537 (758)
T 3ott_A          465 VHNGLSGMFINQIIPDNEGN-VWVLLYNNKGIDKINPRTR---EVTKLFADELTGEKSPNYLLCDEDGLLWVGFHGG---  537 (758)
T ss_dssp             GGGTCSCSCEEEEEECTTSC-EEEEETTCSSEEEEETTTT---EEEEECTTTSCGGGCEEEEEECTTSCEEEEETTE---
T ss_pred             cccccccceeeeEEEcCCCC-EEEEccCCCCcEEEeCCCC---ceEEecCCCcCCCcccceEEECCCCCEEEEecCc---
Confidence             11222  245678888888 887  33334999997543   3333321 111  234568889999999998643   


Q ss_pred             HHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEE
Q 017520          287 RMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGK  366 (370)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~  366 (370)
                                                       +++++++.+.+..|. .+|...+.+..+.+.+|+||+++..  .|.+
T Consensus       538 ---------------------------------l~~~~~~~~~~~~~~-~~gl~~~~i~~i~~~~g~lWi~t~~--Gl~~  581 (758)
T 3ott_A          538 ---------------------------------VMRINPKDESQQSIS-FGSFSNNEILSMTCVKNSIWVSTTN--GLWI  581 (758)
T ss_dssp             ---------------------------------EEEECC--CCCCBCC-CCC---CCEEEEEEETTEEEEEESS--CEEE
T ss_pred             ---------------------------------eEEEecCCCceEEec-ccCCCccceEEEEECCCCEEEECCC--CeEE
Confidence                                             899998876666664 3566666778888888999999954  4666


Q ss_pred             EeC
Q 017520          367 VQL  369 (370)
Q Consensus       367 ~~~  369 (370)
                      ++.
T Consensus       582 ~~~  584 (758)
T 3ott_A          582 IDR  584 (758)
T ss_dssp             EET
T ss_pred             EcC
Confidence            653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.64  E-value=6.6e-14  Score=129.08  Aligned_cols=229  Identities=7%  Similarity=0.002  Sum_probs=154.8

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEe-CCCceEEEc-CCC-eEEEEe
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g-~~~~~~  153 (370)
                      .|++++++ ++++|+++ .++.|..+|  +++...-......|. +++++++|.||+++ ..+.|.+++ .++ +.....
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~-~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~  122 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPR-YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE  122 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEE-EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCc-EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence            58899996 57899998 468899999  677643334567799 99998889999998 556799999 566 432222


Q ss_pred             ecC-CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520          154 YVN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~-g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      ... ......|.+|++ .++++|+++.+                ..+.|.++|++++++.........|+++++++||+ 
T Consensus       123 ~g~~~~~~~~p~~i~~-~~~~lyv~~~~----------------~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~-  184 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ-YGKYVYVNCWS----------------YQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNK-  184 (328)
T ss_dssp             CTTCCTTTCBCCCEEE-ETTEEEEEECT----------------TCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSE-
T ss_pred             cCCccccCCCcceEEE-ECCEEEEEcCC----------------CCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCC-
Confidence            111 112237888999 57899999742                24689999999887765555556799999999998 


Q ss_pred             EEEEeCC-----------c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHH
Q 017520          233 VVVCESW-----------K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKH  299 (370)
Q Consensus       233 l~v~~~~-----------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~  299 (370)
                      +|++..+           + |+++|.++.+.  ...+.-.....|.+++++++|+ +|++.. .                
T Consensus       185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v--~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~----------------  245 (328)
T 3dsm_A          185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTV--EKQFKFKLGDWPSEVQLNGTRDTLYWINN-D----------------  245 (328)
T ss_dssp             EEEEBCCBCTTCSSCBCCCEEEEEETTTTEE--EEEEECCTTCCCEEEEECTTSCEEEEESS-S----------------
T ss_pred             EEEEECCCccCCccccCCceEEEEECCCCeE--EEEEecCCCCCceeEEEecCCCEEEEEcc-E----------------
Confidence            7777653           4 99999765322  1122111123699999999775 777643 2                


Q ss_pred             HHHhCCccccccccCCCceEEEEECCC-CcEEE-EEeCCCCCccccceeEEEE--CCEEEEEe----CCCCeEEEEeCC
Q 017520          300 VLAAYPKLFSQFITLGGGAHLIHVAED-GTIIR-NLVDPTGQLMSFVTSGLQV--DNHLYVIS----LTSNFIGKVQLS  370 (370)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~-~~~~~~g~~~~~~t~~~~~--~g~L~~gs----~~~~~i~~~~~~  370 (370)
                                          ++.+|.+ +++.. .+-. .+  ...+..+...  +++||+++    ..++.|.+++.+
T Consensus       246 --------------------v~~~d~~t~~~~~~~~~~-~~--~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          246 --------------------IWRMPVEADRVPVRPFLE-FR--DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             --------------------EEEEETTCSSCCSSCSBC-CC--SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred             --------------------EEEEECCCCceeeeeeec-CC--CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence                                6788865 44321 1111 11  1234555543  58899998    777888888753

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.64  E-value=3.6e-14  Score=141.66  Aligned_cols=183  Identities=16%  Similarity=0.125  Sum_probs=138.3

Q ss_pred             CCcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC-eEEEEEe-cCCCceeceEEcC-CCcEEEEeCCC-ceEEEcCCC-
Q 017520           76 GSVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG-  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g-~~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~~-gi~~~~~~g-  147 (370)
                      ..+..|.+|++|+ +|.||+++ .+++|++++ +| ..+.+.. ..+.|. ||++|. .++||++|... .|.+++.+| 
T Consensus       346 ~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          346 EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            3367888999996 78999999 678999999 66 3444433 346899 999995 67899999874 566666666 


Q ss_pred             -eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccce
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGV  224 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi  224 (370)
                       .+.+..    ..+..|++|++||. |.||++|.+                ...+|.+.+.++...+.+. ..+..|+||
T Consensus       425 ~~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Gl  484 (619)
T 3s94_A          425 MRKILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGL  484 (619)
T ss_dssp             SCEEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             eEEEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeee
Confidence             444432    23578999999985 999999974                2468999998865555444 468899999


Q ss_pred             EEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          225 ALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++|++++.|||++...  |.+++++|..   .+.+.......|.+|+++.+ +||++....
T Consensus       485 alD~~~~~LY~aD~~~~~I~~~~~dG~~---~~~~~~~~l~~P~glav~~~-~ly~tD~~~  541 (619)
T 3s94_A          485 ALDYDEGKIYWGDAKTDKIEVMNTDGTG---RRVLVEDKIPHIFGFTLLGD-YVYWTDWQR  541 (619)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEESSSCC---CEEEEECCCCSSCCEEEETT-EEEEECTTS
T ss_pred             EEcccCCEEEEEECCCCEEEEEecCCCc---eEEEeccCCCCcEEEEEECC-EEEEeecCC
Confidence            9999888899999876  9999998752   23333233346999999865 899998765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.62  E-value=8.8e-14  Score=141.90  Aligned_cols=181  Identities=13%  Similarity=0.069  Sum_probs=133.4

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC-----eEEEEEe-cCCCceeceEEcCCC-cEEEEeCC-CceEEEcCC
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWKF-IDSQTLVGLTSTKEG-HLIICDNA-NGLHKVSED  146 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g-----~~~~~~~-~~~~p~~gl~~d~~G-~L~v~~~~-~gi~~~~~~  146 (370)
                      +..|.+|++|. ++.||+++ .+++|++++ +|     ..+.+.. ....|. ||++|..+ +||+++.. +.|.+++.+
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeEEEEeCC
Confidence            67899999996 78999999 668899998 54     2333333 556799 99999755 89999987 468888876


Q ss_pred             C--eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCcc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~  222 (370)
                      |  .+.+...    .+..|++|++|+. |.||++|.+                ..++|.++++++...+++. .++..|+
T Consensus       502 G~~~~~l~~~----~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~~l~~P~  561 (791)
T 3m0c_C          502 GVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  561 (791)
T ss_dssp             SSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CCeEEEEEeC----CCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeCCCCCce
Confidence            7  4444331    2457999999985 799999864                2368999999876665554 5678999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||+++++++.|||++...  |.+++++|..   ...+...  .-..|.+|+++. ++||++....
T Consensus       562 GLavD~~~~~LYwaD~~~~~I~~~d~dG~~---~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~  622 (791)
T 3m0c_C          562 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVFE-DKVFWTDIIN  622 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEET-TEEEEEETTT
T ss_pred             EEEEecCCCeEEEEeCCCCcEEEEecCCCc---eEEEecCCCccCCCCEEEEeC-CEEEEEECCC
Confidence            999998888899999876  9999998752   2333322  112466788764 4899998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.62  E-value=6.5e-14  Score=133.22  Aligned_cols=182  Identities=15%  Similarity=0.188  Sum_probs=126.3

Q ss_pred             cCCCcceEEcCCCc-EEEEecCC--eEEEEe-C-Ce-EEEEE---e-cCCCceeceEEcC-CCcEEEEeCCCceEEEcC-
Q 017520           78 VNHPEDASMDKNGV-IYTATRDG--WIKRLQ-D-GT-WVNWK---F-IDSQTLVGLTSTK-EGHLIICDNANGLHKVSE-  145 (370)
Q Consensus        78 ~~~P~~i~~d~~G~-l~v~~~~g--~I~~~~-~-g~-~~~~~---~-~~~~p~~gl~~d~-~G~L~v~~~~~gi~~~~~-  145 (370)
                      ...|. ++++++|+ ||+++.++  +|++++ + +. ...+.   . ....|. ++++++ +|.||+++..+.|++++. 
T Consensus       171 ~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~-~iav~p~~g~lyv~d~~~~I~~~d~~  248 (409)
T 3hrp_A          171 FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIG-AVALDETEEWLYFVDSNKNFGRFNVK  248 (409)
T ss_dssp             CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCC-BCEECTTSSEEEEECTTCEEEEEETT
T ss_pred             CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcE-EEEEeCCCCeEEEEECCCcEEEEECC
Confidence            35677 99998875 78888544  899999 3 32 23331   2 446789 999999 789999886566999994 


Q ss_pred             CC-eEEEEee-cCCccccccc-ceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC----
Q 017520          146 DG-VENFLSY-VNGSKLRFAN-DVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (370)
Q Consensus       146 ~g-~~~~~~~-~~g~~~~~~~-~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----  217 (370)
                      ++ ...+... ..+.....|. ++++++ +|+||++|.                 .+++|++++.++. ...+...    
T Consensus       249 ~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~-----------------~~~~I~~~~~~g~-~~~~~g~~~~~  310 (409)
T 3hrp_A          249 TQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ-----------------NLSSVYKITPDGE-CEWFCGSATQK  310 (409)
T ss_dssp             TCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-----------------TTTEEEEECTTCC-EEEEEECTTCC
T ss_pred             CCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-----------------CCCEEEEEecCCC-EEEEEeCCCCC
Confidence            44 4443221 1121112234 999999 589999986                 3578999998754 4444322    


Q ss_pred             -----------CCCccceEEccCCCEEEEEeC-Cc--EEEEEeCCCCCCceeeeccC--------------CCCCCCcee
Q 017520          218 -----------FYFANGVALSRDEDYVVVCES-WK--CRKYWLKGERKGKLETFAEN--------------LPGAPDNIN  269 (370)
Q Consensus       218 -----------~~~p~gi~~~~dg~~l~v~~~-~~--l~~~~~~~~~~~~~~~~~~~--------------~~g~p~~i~  269 (370)
                                 +..|+|++++++|+ +|+++. .+  |+++++.+.   ....+...              .-..|.+++
T Consensus       311 g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~~~~I~~~~~~~G---~v~~~~g~~~~~g~~~g~~~~~~~~~P~gia  386 (409)
T 3hrp_A          311 TVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFKGYCLRKLDILDG---YVSTVAGQVDVASQIDGTPLEATFNYPYDIC  386 (409)
T ss_dssp             SCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTTTCEEEEEETTTT---EEEEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred             CcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCCCCEEEEEECCCC---EEEEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence                       56799999999999 999998 66  999995432   22222211              013589999


Q ss_pred             ECCCCCEEEEEecC
Q 017520          270 LAPDGTFWIAIIKL  283 (370)
Q Consensus       270 ~d~~G~lwv~~~~~  283 (370)
                      +|++|+|||+....
T Consensus       387 vd~~g~lyVad~~n  400 (409)
T 3hrp_A          387 YDGEGGYWIAEAWG  400 (409)
T ss_dssp             ECSSSEEEEEESTT
T ss_pred             EcCCCCEEEEECCC
Confidence            99999999998765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.61  E-value=4.8e-13  Score=123.57  Aligned_cols=237  Identities=12%  Similarity=0.143  Sum_probs=147.8

Q ss_pred             cCCCcceEEcCCCcEEEEec---CCeEEEEe--CCeEEEEE---ecCCCceeceEEcCCCc-EEEEeCCC-ceEEEc--C
Q 017520           78 VNHPEDASMDKNGVIYTATR---DGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVS--E  145 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~---~g~I~~~~--~g~~~~~~---~~~~~p~~gl~~d~~G~-L~v~~~~~-gi~~~~--~  145 (370)
                      ...|.+++++++|+||+++.   ++.|+.++  +++.+.+.   .....|. ++++++||+ ||+++... .+..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            35899999999999998875   57899998  66654433   3466788 999999997 88887554 455555  4


Q ss_pred             CC-eEEEEee-cCCc------ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEEEEe-
Q 017520          146 DG-VENFLSY-VNGS------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVA-  215 (370)
Q Consensus       146 ~g-~~~~~~~-~~g~------~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~-  215 (370)
                      +| .+.+... ..+.      ....++.+++++||++|+++.                 ..+.|..|+.+ +++..... 
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~-----------------~~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL-----------------GSDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET-----------------TTTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC-----------------CCCEEEEEEECCCCcEEEeee
Confidence            55 4433221 1111      123467899999999988875                 34577777765 45444321 


Q ss_pred             ---cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCC--CCCCceeeeccCCC------CCCCceeECCCCC-EEEEEe
Q 017520          216 ---DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKG--ERKGKLETFAENLP------GAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       216 ---~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~--~~~~~~~~~~~~~~------g~p~~i~~d~~G~-lwv~~~  281 (370)
                         .....|.++++++||+.+|++....  +.+|+++.  .+......+. ..+      ..|..+++++||+ +|++..
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVK-TIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEE-SSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeee-ecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence               2234678899999999999987654  77777763  2111111111 122      2356699999997 777765


Q ss_pred             cCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcE--EEEEeCCCCCccccceeEEEE-C-CEEEEE
Q 017520          282 KLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTI--IRNLVDPTGQLMSFVTSGLQV-D-NHLYVI  357 (370)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~--~~~~~~~~g~~~~~~t~~~~~-~-g~L~~g  357 (370)
                      ...                                .-.++.++.+|+.  +..+... +.   .+..+... + ..||++
T Consensus       260 ~~~--------------------------------~v~v~~~~~~g~~~~~~~~~~~-~~---~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          260 GYN--------------------------------TLAVFAVTADGHLTLIQQISTE-GD---FPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             TTT--------------------------------EEEEEEECGGGCEEEEEEEECS-SS---CCCEEEECTTSSEEEEE
T ss_pred             CCC--------------------------------EEEEEEECCCCcEEEeEEEecC-CC---CcCeEEECCCCCEEEEE
Confidence            431                                1123444444533  3333331 21   23344443 3 468888


Q ss_pred             eCCCCeEEEEeC
Q 017520          358 SLTSNFIGKVQL  369 (370)
Q Consensus       358 s~~~~~i~~~~~  369 (370)
                      +..++.|.++++
T Consensus       304 ~~~~~~v~v~~~  315 (347)
T 3hfq_A          304 NQNTDNATLYAR  315 (347)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             EcCCCcEEEEEE
Confidence            888888887754

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.60  E-value=1.1e-13  Score=138.25  Aligned_cols=182  Identities=15%  Similarity=0.118  Sum_probs=136.1

Q ss_pred             CcCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCeE--EEEEe------cCCCceeceEEcCC-CcEEEEeCCCc-eEEE
Q 017520           77 SVNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGTW--VNWKF------IDSQTLVGLTSTKE-GHLIICDNANG-LHKV  143 (370)
Q Consensus        77 ~~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~~--~~~~~------~~~~p~~gl~~d~~-G~L~v~~~~~g-i~~~  143 (370)
                      .+..+..|++|. ++.||+++ .+++|++++ +|..  +.+..      ....|. ||++|.. ++||+++...+ |..+
T Consensus       338 ~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~-glAvD~~~~nLY~td~~~~~I~v~  416 (628)
T 4a0p_A          338 SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPY-DLSIDIYSRYIYWTCEATNVINVT  416 (628)
T ss_dssp             TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcc-eEEeeccCCeEEEEcCCCCEEEEE
Confidence            356788899986 78999999 678999999 6642  33322      345799 9999986 57999997754 5555


Q ss_pred             cCCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCC-ceEEEEeCCCCeEEEEe-cCC
Q 017520          144 SEDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPH-GQLLKYDPSSNITTLVA-DGF  218 (370)
Q Consensus       144 ~~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~t~~~~~~~-~~~  218 (370)
                      +.+|  .+.+...    .+..|++|++|| +|.||++|..                .. ++|++.++++...+.+. ..+
T Consensus       417 ~~~G~~~~~l~~~----~l~~Pr~iavdp~~g~ly~tD~g----------------~~~~~I~r~~~dG~~~~~l~~~~l  476 (628)
T 4a0p_A          417 RLDGRSVGVVLKG----EQDRPRAVVVNPEKGYMYFTNLQ----------------ERSPKIERAALDGTEREVLFFSGL  476 (628)
T ss_dssp             ETTSCEEEEEEEC----TTCCEEEEEEETTTTEEEEEEEE----------------TTEEEEEEEETTSCSCEEEECSSC
T ss_pred             ECCCCeEEEEEeC----CCCceeeEEEecCCCeEEEeecC----------------CCCCeEEEEeCCCCCcEEEEeccC
Confidence            5677  3444332    246799999998 8999999864                22 37999999866665554 468


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ..|+|+++|++++.|||++...  |.+++++|.   .++.+.......|.+|+++. |++|++....
T Consensus       477 ~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~---~r~~~~~~~~~~P~glav~~-~~ly~tD~~~  539 (628)
T 4a0p_A          477 SKPIALALDSRLGKLFWADSDLRRIESSDLSGA---NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQ  539 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---SCEEEECSSCSCEEEEEEET-TEEEEEETTT
T ss_pred             CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC---ceEEEEcCCCCCcEEEEEEC-CEEEEEECCC
Confidence            8999999999988899999875  999999875   24444433335699999987 7899998765

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.59  E-value=1.2e-13  Score=125.53  Aligned_cols=177  Identities=18%  Similarity=0.222  Sum_probs=126.0

Q ss_pred             CCCcceEEcCC-CcEEEEecCCeEEEEe-CCeEEEE-Eec-----CCCceeceEEcCCCcEEEEeCC-------------
Q 017520           79 NHPEDASMDKN-GVIYTATRDGWIKRLQ-DGTWVNW-KFI-----DSQTLVGLTSTKEGHLIICDNA-------------  137 (370)
Q Consensus        79 ~~P~~i~~d~~-G~l~v~~~~g~I~~~~-~g~~~~~-~~~-----~~~p~~gl~~d~~G~L~v~~~~-------------  137 (370)
                      ..|.++++|++ |+||+++..++|++++ +|++..+ ...     ...|. ++++|++|++|+++..             
T Consensus        71 ~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~~~~~  149 (314)
T 1pjx_A           71 GIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCN-DCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCC-EEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCCceEEEecCCCcEEEEECCCCEEEEeCCCCEEEEEeccCCCccccCCc-CEEECCCCCEEEEecCccccccccccccc
Confidence            57899999999 9999999766899999 8776655 321     23478 9999999999999864             


Q ss_pred             ---CceEEEcCCC-eEEEEeecCCcccccccceEEc----CCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCC-
Q 017520          138 ---NGLHKVSEDG-VENFLSYVNGSKLRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-  207 (370)
Q Consensus       138 ---~gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d----~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-  207 (370)
                         .+|++++.++ ...+...     ...+++++++    ++| .+|+++.                 ..++|++||.+ 
T Consensus       150 ~~~~~l~~~~~~g~~~~~~~~-----~~~~~~i~~~~~~d~dg~~l~v~~~-----------------~~~~i~~~~~~~  207 (314)
T 1pjx_A          150 EKFGSIYCFTTDGQMIQVDTA-----FQFPNGIAVRHMNDGRPYQLIVAET-----------------PTKKLWSYDIKG  207 (314)
T ss_dssp             SSCEEEEEECTTSCEEEEEEE-----ESSEEEEEEEECTTSCEEEEEEEET-----------------TTTEEEEEEEEE
T ss_pred             CCCCeEEEECCCCCEEEeccC-----CCCcceEEEecccCCCCCEEEEEEC-----------------CCCeEEEEECCC
Confidence               3689998557 5544322     2357889999    999 6999975                 34689999865 


Q ss_pred             CCeEE---EEe--cC-C-CCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EE
Q 017520          208 SNITT---LVA--DG-F-YFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FW  277 (370)
Q Consensus       208 t~~~~---~~~--~~-~-~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lw  277 (370)
                      +++..   .+.  .. . ..|.+++++++|+ +|+++.. + |.+|+.++.+.  ...+. .....|.+++++++|+ +|
T Consensus       208 ~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~~g~~--~~~~~-~~~~~~~~i~~~~dg~~l~  283 (314)
T 1pjx_A          208 PAKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPDGGQP--KMRIR-CPFEKPSNLHFKPQTKTIF  283 (314)
T ss_dssp             TTEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTTCBSC--SEEEE-CSSSCEEEEEECTTSSEEE
T ss_pred             CCccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCCCCcE--eEEEe-CCCCCceeEEECCCCCEEE
Confidence            34321   111  11 1 5689999999998 8888743 4 99999762221  12221 1224678899999998 99


Q ss_pred             EEEec
Q 017520          278 IAIIK  282 (370)
Q Consensus       278 v~~~~  282 (370)
                      +++..
T Consensus       284 v~~~~  288 (314)
T 1pjx_A          284 VTEHE  288 (314)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            99865

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=9.1e-14  Score=126.63  Aligned_cols=180  Identities=13%  Similarity=0.137  Sum_probs=128.1

Q ss_pred             CCCcceEEcCCCcEEEEec-CCeEEEEe-CCeEEEEEec-----CCCceeceEEcCCCcEEEEeC---------------
Q 017520           79 NHPEDASMDKNGVIYTATR-DGWIKRLQ-DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDN---------------  136 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~-~g~I~~~~-~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~~~---------------  136 (370)
                      ..|.++++|++|++|+++. +++|++++ +|+++.+...     ...|+ +++++++|++|++|.               
T Consensus        86 ~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~-~i~~d~dG~l~~td~~~g~~~~~~~~~~~~  164 (305)
T 3dr2_A           86 AFTNGNAVDAQQRLVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPN-DLIVARDGAIWFTDPPFGLRKPSQGCPADP  164 (305)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECEETTEECSCCC-CEEECTTSCEEEECCSGGGSCGGGSCCCCC
T ss_pred             CccceeeECCCCCEEEEECCCCEEEEECCCCCEEEEEeccCCCccCCCC-CEEECCCCCEEEeCcCCCcccccccccccc
Confidence            4689999999999999984 47899999 8887666432     24578 899999999999752               


Q ss_pred             ---CCceEEEcC-CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520          137 ---ANGLHKVSE-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       137 ---~~gi~~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                         ..+|+++++ +| ++.+. .     +..++++++++||+ ||+++....            ....+.|++|+.+++.
T Consensus       165 ~~~~~~v~~~d~~~g~~~~~~-~-----~~~p~gl~~spdg~~lyv~~~~~~------------~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          165 ELAHHSVYRLPPDGSPLQRMA-D-----LDHPNGLAFSPDEQTLYVSQTPEQ------------GHGSVEITAFAWRDGA  226 (305)
T ss_dssp             SSSCEEEEEECSSSCCCEEEE-E-----ESSEEEEEECTTSSEEEEEECCC---------------CCCEEEEEEEETTE
T ss_pred             ccCCCeEEEEcCCCCcEEEEe-c-----CCCCcceEEcCCCCEEEEEecCCc------------CCCCCEEEEEEecCCC
Confidence               246999995 67 65543 2     35788999999996 999976310            0013578888876443


Q ss_pred             E---EEEec-CCCCccceEEccCCCEEEEEeCCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecC
Q 017520          211 T---TLVAD-GFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKL  283 (370)
Q Consensus       211 ~---~~~~~-~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~  283 (370)
                      .   +.+.. ....|.|++++++|+ +|++..++|++|+.++..   ...+.  .+..+.++++++++ .||+++..+
T Consensus       227 l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~gv~~~~~~g~~---~~~~~--~~~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          227 LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGTGVCVFDSDGQL---LGHIP--TPGTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             EEEEEEEECCSSSCCCSEEECTTSC-EEECCSSEEEEECTTSCE---EEEEE--CSSCCCEEEECTTSCEEEEEETTE
T ss_pred             ccCCeEEEECCCCCCCeEEECCCCC-EEEecCCcEEEECCCCCE---EEEEE--CCCceeEEEEeCCCCEEEEEcCCe
Confidence            2   22221 235689999999999 899885559999976542   22221  23348899998777 599998654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.58  E-value=1e-14  Score=147.80  Aligned_cols=181  Identities=13%  Similarity=0.101  Sum_probs=130.6

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CC-----eEEEEE-ecCCCceeceEEc-CCCcEEEEeCC-CceEEEcCC
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-----TWVNWK-FIDSQTLVGLTST-KEGHLIICDNA-NGLHKVSED  146 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g-----~~~~~~-~~~~~p~~gl~~d-~~G~L~v~~~~-~gi~~~~~~  146 (370)
                      +..|++|++|+ ++.||+++ .+++|++++ ++     ..+.+. .....|. ||++| ..|+||+++.. +.|.+++.+
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~LY~tD~~~~~I~v~d~d  483 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  483 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBCEECCTTTSCEEEEBSS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcEEEEeccCCeEEEEecC
Confidence            56899999996 67999998 668899999 54     222222 2234688 99999 56789999876 568888866


Q ss_pred             C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCcc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFAN  222 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~  222 (370)
                      |  .+.+..    ..+..|++|++|+ .|.||+++..                ..++|+++++++...+++ ...+..|+
T Consensus       484 g~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          484 GVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            6  444432    1245789999998 5789999863                236899998875544444 35688999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeecc--CCCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ||+++++++.|||++...  |.++++++.   ..+.+..  .....|.+|++|.+ ++|++....
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~---~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~  604 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGG---NRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN  604 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSS---CCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCC---ceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence            999999887899999876  999998763   2333332  12346999999986 677777654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.58  E-value=8.5e-14  Score=129.75  Aligned_cols=164  Identities=12%  Similarity=0.138  Sum_probs=112.6

Q ss_pred             ceEecCCCcCCCcceEEcCCCc-EEEEecCCeEEEEe-CCeEEE-EE-------ecCCCceeceEEcC----CCcEEEEe
Q 017520           70 FIKVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVN-WK-------FIDSQTLVGLTSTK----EGHLIICD  135 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~-~g~~~~-~~-------~~~~~p~~gl~~d~----~G~L~v~~  135 (370)
                      +++++.+ +..|.+|+++++|+ |||++..|+|++++ +|+... +.       ...+.++ +|++++    +|.||++.
T Consensus        10 ~~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A           10 VEVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEEEEEE
T ss_pred             EEEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEEEEEE
Confidence            3455554 78999999999999 99999889999999 775432 11       1223568 999998    58999986


Q ss_pred             CC--------CceEEEc-C-C-C-e---EEEEeecCC--cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520          136 NA--------NGLHKVS-E-D-G-V---ENFLSYVNG--SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (370)
Q Consensus       136 ~~--------~gi~~~~-~-~-g-~---~~~~~~~~g--~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  198 (370)
                      ..        ..|.+++ . + + +   +.+....+.  ...+.++.|++++||.|||+......  ...  .-......
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~--~q~~~~~~  163 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPT--AQDLDKLQ  163 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGG--GGCTTSCT
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCc--cCCCCCCC
Confidence            43        2578776 2 2 2 2   223332221  23456789999999999999753111  000  00012345


Q ss_pred             ceEEEEeCCCC-------------eEEEEecCCCCccceEEccCCCEEEEEeCC
Q 017520          199 GQLLKYDPSSN-------------ITTLVADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       199 g~l~~~d~~t~-------------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      ++|+|+|+++.             ..+++..++.+|.|++++++...||+++.+
T Consensus       164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence            78999999854             456677889999999999954459999986

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.58  E-value=6.7e-14  Score=133.96  Aligned_cols=181  Identities=13%  Similarity=0.137  Sum_probs=125.6

Q ss_pred             CcCCCcceEEcCCCcEEEEecCC-----eEEEEe-CCeEE--EEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcC-
Q 017520           77 SVNHPEDASMDKNGVIYTATRDG-----WIKRLQ-DGTWV--NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSE-  145 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~~~g-----~I~~~~-~g~~~--~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~-  145 (370)
                      .+..|.+|++|++|+||+++..+     .++.+. ++.+.  ........|. ++++++ +|+|||++.. +.|+++++ 
T Consensus       180 ~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~~~~~P~-giavd~~~G~lyv~d~~~~~V~~~d~~  258 (433)
T 4hw6_A          180 NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLCNARGAK-TCAVHPQNGKIYYTRYHHAMISSYDPA  258 (433)
T ss_dssp             CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEEECSSBC-CCEECTTTCCEEECBTTCSEEEEECTT
T ss_pred             CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccccccCCCC-EEEEeCCCCeEEEEECCCCEEEEEECC
Confidence            46789999999999999998532     466666 33221  2223567899 999999 8999999976 46999995 


Q ss_pred             CC-e-EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC--CCeE---EEEec-
Q 017520          146 DG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SNIT---TLVAD-  216 (370)
Q Consensus       146 ~g-~-~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--t~~~---~~~~~-  216 (370)
                      +| + +.+... ..  ....+.|+++++|+ ||++|.                 .+.+|++++.+  ++.+   ..+.. 
T Consensus       259 ~g~~~~~~~~~-~~--~~~~~~ia~dpdG~~LYvad~-----------------~~~~I~~~~~d~~~~~~~~~~~~ag~  318 (433)
T 4hw6_A          259 TGTLTEEEVMM-DT--KGSNFHIVWHPTGDWAYIIYN-----------------GKHCIYRVDYNRETGKLAVPYIVCGQ  318 (433)
T ss_dssp             TCCEEEEEEEC-SC--CSSCEEEEECTTSSEEEEEET-----------------TTTEEEEEEBCTTTCCBCCCEEEEEC
T ss_pred             CCeEEEEEecc-CC--CCCcccEEEeCCCCEEEEEeC-----------------CCCEEEEEeCCCCCcccCcEEEEEec
Confidence            47 5 444322 11  12445799999997 999987                 34688887754  3322   12221 


Q ss_pred             --------------CCCCccceEE---------ccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC-----------
Q 017520          217 --------------GFYFANGVAL---------SRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN-----------  260 (370)
Q Consensus       217 --------------~~~~p~gi~~---------~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~-----------  260 (370)
                                    .+..|.++++         +.+|+ |||++..+  |.+++.+|.    ...+...           
T Consensus       319 ~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~~G~----v~t~~G~g~~~~~G~~dG  393 (433)
T 4hw6_A          319 HSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTPEGR----VTTYAGRGNSREWGYVDG  393 (433)
T ss_dssp             TTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECTTSE----EEEEECCCTTCSSCCBCE
T ss_pred             CCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECCCCC----EEEEEeCCCCCccccCCC
Confidence                          2567999999         77776 99999877  999986542    2222110           


Q ss_pred             ------CCCCCCceeEC-CCCCEEEEEecC
Q 017520          261 ------LPGAPDNINLA-PDGTFWIAIIKL  283 (370)
Q Consensus       261 ------~~g~p~~i~~d-~~G~lwv~~~~~  283 (370)
                            .-..|.+|++| ++|+|||+....
T Consensus       394 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          394 ELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence                  01248899999 899999999765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.56  E-value=5.9e-14  Score=142.17  Aligned_cols=224  Identities=10%  Similarity=0.113  Sum_probs=155.7

Q ss_pred             EEcCCCcEEEEecCCeEEEEe-C-CeEEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC------eEEEEee
Q 017520           85 SMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG------VENFLSY  154 (370)
Q Consensus        85 ~~d~~G~l~v~~~~g~I~~~~-~-g~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g------~~~~~~~  154 (370)
                      +++....|+++.. +.|.+++ + ++...+......|. +|++++ ++.||+++.. +.|++++.++      ...+   
T Consensus       373 ~~~~~~~ll~~~~-~~I~~id~~~~~~~~~~~~~~~p~-gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~---  447 (699)
T 1n7d_A          373 AVGSIAYLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV---  447 (699)
T ss_dssp             CCSSCCCBCCCCT-TC-CEECTTSCCEECCSCCCTTCC-CCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCB---
T ss_pred             ccccceeEEecCc-cceEEEeCCCCcceeeeccCcceE-EEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEE---
Confidence            3345566777764 4688888 4 34555555567889 999996 5689999876 5788888432      1111   


Q ss_pred             cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~  232 (370)
                       ....+..|.+|++|. .|+||++|.                 ..++|.+++++++..+++. ..+..|++|+++++++.
T Consensus       448 -i~~~~~~P~glavD~~~g~LY~tD~-----------------~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~  509 (699)
T 1n7d_A          448 -ISRDIQAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGF  509 (699)
T ss_dssp             -CCSCC--CCCEECCCSSSBCEECCT-----------------TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSC
T ss_pred             -EeCCCCCcceEEEEeeCCcEEEEec-----------------cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCc
Confidence             111245788999994 679999986                 3468999999877666554 45788999999998777


Q ss_pred             EEEEeCC--c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC-CCEEEEEecCchhHHHhhhcchhHHHHHHhCCccc
Q 017520          233 VVVCESW--K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD-GTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  308 (370)
Q Consensus       233 l~v~~~~--~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~-G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (370)
                      |||++.+  + |+++++++..   .+.+.......|++|++|++ ++||++....                         
T Consensus       510 ly~td~~~~~~I~~~~~dG~~---~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~-------------------------  561 (699)
T 1n7d_A          510 MYWTDWGTPAKIKKGGLNGVD---IYSLVTENIQWPNGITLDLLSGRLYWVDSKL-------------------------  561 (699)
T ss_dssp             CEECCCSSSCCEEBCCSSSCC---CCEESCSSCSSCCCEEECTTTCCEEEEETTT-------------------------
T ss_pred             EEEcccCCCCeEEEEeCCCCC---eeEEEeCCCCCccEEEEeccCCEEEEEecCC-------------------------
Confidence            9999864  3 9999987742   22232222346999999975 6899998654                         


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          309 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       309 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                               ..|.+++.+|...+.+....+. ......+...+++||+....++.|.+++.
T Consensus       562 ---------~~I~~~d~dG~~~~~~~~~~~~-~~~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          562 ---------HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ---------TEEEEECSSSSCCEEECCCSSS-CSSCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             ---------CeEEEEccCCCceEEEEecCCc-CCCceEeEEECCEEEEEeCCCCeEEEEEc
Confidence                     3588999988766666443222 23344555567899999999999999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=1.5e-13  Score=131.51  Aligned_cols=181  Identities=12%  Similarity=0.131  Sum_probs=124.1

Q ss_pred             CcCCCcceEEcCCCc-EEEEecC-C----eEEEEe-CCeEE--EEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEcC
Q 017520           77 SVNHPEDASMDKNGV-IYTATRD-G----WIKRLQ-DGTWV--NWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSE  145 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~-l~v~~~~-g----~I~~~~-~g~~~--~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~  145 (370)
                      .+..|.+|++|++|+ ||+++.. +    .++.++ +|.+.  ........|. ++++++ +|.||+++.. +.|++++.
T Consensus       177 ~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~-giavdp~~g~lyv~d~~~~~V~~~~~  255 (430)
T 3tc9_A          177 GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCN-GAETHPINGELYFNSWNAGQVFRYDF  255 (430)
T ss_dssp             CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCC-CEEECTTTCCEEEEETTTTEEEEEET
T ss_pred             CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCce-EEEEeCCCCEEEEEECCCCEEEEEEC
Confidence            356899999999998 9999842 2    466677 55432  2223456799 999999 8999999976 56999995


Q ss_pred             CC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC--CeE---EEEec-
Q 017520          146 DG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NIT---TLVAD-  216 (370)
Q Consensus       146 ~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--~~~---~~~~~-  216 (370)
                      ++  ...+... .+  ...|++|+++++|+ ||+++.                 ...+|++++.+.  +.+   ..+.. 
T Consensus       256 ~~~~~~~~~~~-~~--~~~P~gia~~pdG~~lyv~d~-----------------~~~~I~~~~~d~~~~~~~~~~~~ag~  315 (430)
T 3tc9_A          256 TTQETTPLFTI-QD--SGWEFHIQFHPSGNYAYIVVV-----------------NQHYILRSDYDWKTKRLTTPYIVCGQ  315 (430)
T ss_dssp             TTTEEEEEEEC-SS--SSCCEEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTTTEECCCEEEEEC
T ss_pred             CCCcEEEEEEc-CC--CCcceeEEEcCCCCEEEEEEC-----------------CCCEEEEEeCCcccccccceEEEecc
Confidence            54  4333322 11  24789999999998 999986                 346788876542  222   22221 


Q ss_pred             --------------CCCCcc-ceEEc--------cCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC----C------
Q 017520          217 --------------GFYFAN-GVALS--------RDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN----L------  261 (370)
Q Consensus       217 --------------~~~~p~-gi~~~--------~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~----~------  261 (370)
                                    .+..|. |++++        ++|+ |||+++.+  |.+++.+|    ....+...    .      
T Consensus       316 ~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~~~G----~v~~~~g~g~~~~~G~~dG  390 (430)
T 3tc9_A          316 QGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILTPQG----RVTTFAGRGSNGTSGYNDG  390 (430)
T ss_dssp             TTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEECTTS----EEEEEEECCTTSSSSCBCE
T ss_pred             CCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEECCCC----cEEEEEeCCCCCCCcccCC
Confidence                          255688 88885        4465 99999876  99998554    22222111    0      


Q ss_pred             -------CCCCCceeECC-CCCEEEEEecC
Q 017520          262 -------PGAPDNINLAP-DGTFWIAIIKL  283 (370)
Q Consensus       262 -------~g~p~~i~~d~-~G~lwv~~~~~  283 (370)
                             -..|.+|++|+ +|+|||+....
T Consensus       391 ~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          391 DLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             ETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             CchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence                   12599999998 68999998765

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.55  E-value=4.2e-13  Score=122.79  Aligned_cols=214  Identities=16%  Similarity=0.170  Sum_probs=139.0

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe-CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeecCCc
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ-DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGS  158 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~~g~  158 (370)
                      .++++|++|.||+++.+  |++++ +|+... +........ ...+. +|.||++...+++++++.+| ....... .. 
T Consensus        63 ~~~~~~~~g~l~v~t~~--l~~~d~~g~~~~~~~~~~~~~~-~~~~~-~~~l~v~t~~~~l~~~d~~g~~~~~~~~-~~-  136 (330)
T 3hxj_A           63 CRPSIGKDGTIYFGSDK--VYAINPDGTEKWRFDTKKAIVS-DFTIF-EDILYVTSMDGHLYAINTDGTEKWRFKT-KK-  136 (330)
T ss_dssp             ECCEETTTTEECCSSCE--EEEECCCGGGGGGSCC-----C-CEEEE-TTEEEEECTTSEEEEECTTSCEEEEEEC-SS-
T ss_pred             cceEEecCCcEEEecCc--EEEECCCCcEEEEEECCCCccc-CceEE-CCEEEEEecCCEEEEEcCCCCEEEEEcC-CC-
Confidence            46788889999999855  99998 654221 111111112 34444 88999998778899999557 3322221 11 


Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEEEEe
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                        .....++++++|++|++..                  .++|+++|++ ++. ............++++.+++ +|++.
T Consensus       137 --~~~~~~~~~~~g~l~vgt~------------------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t  194 (330)
T 3hxj_A          137 --AIYATPIVSEDGTIYVGSN------------------DNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS  194 (330)
T ss_dssp             --CCCSCCEECTTSCEEEECT------------------TSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES
T ss_pred             --ceeeeeEEcCCCEEEEEcC------------------CCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe
Confidence              2456678899999999853                  3789999998 543 33333334456678888887 88888


Q ss_pred             CCcEEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCc
Q 017520          238 SWKCRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  317 (370)
Q Consensus       238 ~~~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (370)
                       ++|++++.++.   ....+. ........++.|++|++|+++..+                                  
T Consensus       195 -~~l~~~d~~g~---~~~~~~-~~~~~~~~~~~~~~g~l~v~t~~~----------------------------------  235 (330)
T 3hxj_A          195 -DKVYAINPDGT---EKWNFY-AGYWTVTRPAISEDGTIYVTSLDG----------------------------------  235 (330)
T ss_dssp             -SSEEEECTTSC---EEEEEC-CSSCCCSCCEECTTSCEEEEETTT----------------------------------
T ss_pred             -CEEEEECCCCc---EEEEEc-cCCcceeceEECCCCeEEEEcCCC----------------------------------
Confidence             55999983332   111111 122346678899999999998753                                  


Q ss_pred             eEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEe
Q 017520          318 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       318 g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~  368 (370)
                       .+++++++|+.++.+....+.    .+..... +|+||+++..+ .|.+++
T Consensus       236 -gl~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~v~t~~g-gl~~~d  281 (330)
T 3hxj_A          236 -HLYAINPDGTEKWRFKTGKRI----ESSPVIGNTDTIYFGSYDG-HLYAIN  281 (330)
T ss_dssp             -EEEEECTTSCEEEEEECSSCC----CSCCEECTTSCEEEECTTC-EEEEEC
T ss_pred             -eEEEECCCCCEeEEeeCCCCc----cccceEcCCCeEEEecCCC-CEEEEC
Confidence             489999999999888765432    2233334 78999999764 455544

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.53  E-value=3.3e-13  Score=122.46  Aligned_cols=177  Identities=10%  Similarity=0.044  Sum_probs=125.6

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEec-----CCCceeceEEcCCCcEEEEeCC------------Cc
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI-----DSQTLVGLTSTKEGHLIICDNA------------NG  139 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~-----~~~p~~gl~~d~~G~L~v~~~~------------~g  139 (370)
                      ..|.+++++++|++|+++ +++|++++  +++++.+...     ..+++ ++++|++|++|+++..            .+
T Consensus        54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~-di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFN-DGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEE-EEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCC-CEEECCCCCEEEecCCcccccccccCCCcE
Confidence            468899999999999998 56799999  6777766543     23577 8999999999998732            36


Q ss_pred             eEEEcCCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeE---E
Q 017520          140 LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNIT---T  212 (370)
Q Consensus       140 i~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~---~  212 (370)
                      |++++++| ...+...     +..+|++++++||+ +|++++                 ..++|++|+.  .++..   +
T Consensus       132 l~~~d~~g~~~~~~~~-----~~~pngi~~spdg~~lyv~~~-----------------~~~~i~~~~~d~~~G~~~~~~  189 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQ-----VDISNGLDWSLDHKIFYYIDS-----------------LSYSVDAFDYDLQTGQISNRR  189 (297)
T ss_dssp             EEEECTTSCEEEEEEE-----ESBEEEEEECTTSCEEEEEEG-----------------GGTEEEEEEECTTTCCEEEEE
T ss_pred             EEEEECCCCEEEEeec-----cccccceEEcCCCCEEEEecC-----------------CCCcEEEEeccCCCCcccCcE
Confidence            89998767 5444332     34689999999995 999976                 3467888874  45543   2


Q ss_pred             EEe---cCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeEC-CCC-CEEEEEecC
Q 017520          213 LVA---DGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIKL  283 (370)
Q Consensus       213 ~~~---~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G-~lwv~~~~~  283 (370)
                      .+.   .....|.|++++++|+ +|++...+  |.+|++++.   +...........|.+++++ +++ .|||++...
T Consensus       190 ~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~~d~~tG---~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          190 SVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIRLDPVTG---KRLQTVKLPVDKTTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             EEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEEECTTTC---CEEEEEECSSSBEEEEEEESGGGCEEEEEEBCT
T ss_pred             EEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEEEcCCCc---eEEEEEECCCCCceEEEEeCCCCCEEEEEcCCc
Confidence            222   1234689999999997 89988655  999997632   2211121111357788996 565 599998654

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=1.6e-12  Score=119.40  Aligned_cols=178  Identities=13%  Similarity=0.136  Sum_probs=123.6

Q ss_pred             CCCcceEEcCCCcEEEEecC-----CeEEEEe--CCeEEEEEe---cCCCceeceEEcCCCcEEEEeCC-------CceE
Q 017520           79 NHPEDASMDKNGVIYTATRD-----GWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGHLIICDNA-------NGLH  141 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~-----g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~-------~gi~  141 (370)
                      ..|.++++|++|++|+++..     ++|++++  +++.+.+..   ....+. +++++++|++|+++..       .+|+
T Consensus        87 ~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           87 ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCID-DMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEE-EEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCccc-ceEECCCCCEEEEeccccccCCCceEE
Confidence            46899999999999999844     4899999  445553332   234678 9999999999999863       4699


Q ss_pred             EEcC-CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC--CeEEEE--
Q 017520          142 KVSE-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NITTLV--  214 (370)
Q Consensus       142 ~~~~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--~~~~~~--  214 (370)
                      +++. ++ +..+...     ...+++++++++|+ +|+++.                 ..++|++||.++  +....+  
T Consensus       166 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~dg~~l~v~~~-----------------~~~~i~~~d~~~~g~~~~~~~~  223 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQN-----ISVANGIALSTDEKVLWVTET-----------------TANRLHRIALEDDGVTIQPFGA  223 (333)
T ss_dssp             EECTTSCCEEEEEEE-----ESSEEEEEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSSSEEEEEE
T ss_pred             EEeCCCCEEEEeecC-----CCcccceEECCCCCEEEEEeC-----------------CCCeEEEEEecCCCcCcccccc
Confidence            9984 44 5444322     23578899999996 999975                 246899998743  222211  


Q ss_pred             -----ecCCCCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCceeeeccCCC--C---CCCceeECCCC-CEEEEEe
Q 017520          215 -----ADGFYFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKLETFAENLP--G---APDNINLAPDG-TFWIAII  281 (370)
Q Consensus       215 -----~~~~~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~~~~~~~~~--g---~p~~i~~d~~G-~lwv~~~  281 (370)
                           ..+...|.+++++++|+ +|++... + |.+|+.++.   ....+.....  +   .|.++++++|| +||+++.
T Consensus       224 ~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~---~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          224 TIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY---PIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             EEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC---EEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             eEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC---EEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence                 11224688999999998 8888754 3 999987543   2222221110  1   58889999887 7999987


Q ss_pred             cC
Q 017520          282 KL  283 (370)
Q Consensus       282 ~~  283 (370)
                      .+
T Consensus       300 ~g  301 (333)
T 2dg1_A          300 DI  301 (333)
T ss_dssp             CG
T ss_pred             cc
Confidence            65

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.53  E-value=1.1e-11  Score=113.38  Aligned_cols=233  Identities=9%  Similarity=0.094  Sum_probs=147.6

Q ss_pred             cCCCcceEEcCCCc-EEEEec-CCeEEEEe--CCeE-EEEEecCCCceec-eEEcCCCcEEEEeCCC----ceEEEc-CC
Q 017520           78 VNHPEDASMDKNGV-IYTATR-DGWIKRLQ--DGTW-VNWKFIDSQTLVG-LTSTKEGHLIICDNAN----GLHKVS-ED  146 (370)
Q Consensus        78 ~~~P~~i~~d~~G~-l~v~~~-~g~I~~~~--~g~~-~~~~~~~~~p~~g-l~~d~~G~L~v~~~~~----gi~~~~-~~  146 (370)
                      ...| +++++++|. +|+++. ++.|+.++  +++. .........|. . ++++++|+.+++....    .|..++ .+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~  117 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM-ADVDITPDDQFAVTVTGLNHPFNMQSYSFLK  117 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC-CCEEECTTSSEEEECCCSSSSCEEEEEETTT
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc-cceEECCCCCEEEEecCCCCcccEEEEECCC
Confidence            3456 999999996 888884 78999999  6665 44444556677 6 9999999744344343    577788 55


Q ss_pred             C-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCce-EEEEeCCC-CeE----EEEecCC
Q 017520          147 G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQ-LLKYDPSS-NIT----TLVADGF  218 (370)
Q Consensus       147 g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~-l~~~d~~t-~~~----~~~~~~~  218 (370)
                      + ......  .+   ..++.+++++||+ +|+++..                 .+. +..|+.+. +..    .......
T Consensus       118 ~~~~~~~~--~~---~~~~~~~~spdg~~l~~~~~~-----------------~~~~i~~~~~~~~g~~~~~~~~~~~~~  175 (331)
T 3u4y_A          118 NKFISTIP--IP---YDAVGIAISPNGNGLILIDRS-----------------SANTVRRFKIDADGVLFDTGQEFISGG  175 (331)
T ss_dssp             TEEEEEEE--CC---TTEEEEEECTTSSCEEEEEET-----------------TTTEEEEEEECTTCCEEEEEEEEECSS
T ss_pred             CCeEEEEE--CC---CCccceEECCCCCEEEEEecC-----------------CCceEEEEEECCCCcEeecCCccccCC
Confidence            6 322222  11   3568999999995 8888652                 233 44444321 222    1122334


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCc-eeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcc
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGK-LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSS  294 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~  294 (370)
                      ..|.++++++||+.+|++....  |.+|++++.+... ...+.  ....|.++++++||+ +|++....           
T Consensus       176 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~-----------  242 (331)
T 3u4y_A          176 TRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTEST-----------  242 (331)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSE-----------
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCC-----------
Confidence            5689999999999999998654  9999987543211 22222  235688999999998 77775432           


Q ss_pred             hhHHHHHHhCCccccccccCCCceEEEEECCC-CcE--EEEEeCC---CCCccccceeEEEE--CCEEEEEeCCCCeEEE
Q 017520          295 KLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTI--IRNLVDP---TGQLMSFVTSGLQV--DNHLYVISLTSNFIGK  366 (370)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~--~~~~~~~---~g~~~~~~t~~~~~--~g~L~~gs~~~~~i~~  366 (370)
                                             +.+..+|.+ |++  +..+...   .+........+...  +..||+++..++.|.+
T Consensus       243 -----------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  299 (331)
T 3u4y_A          243 -----------------------VDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKV  299 (331)
T ss_dssp             -----------------------EEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             -----------------------CEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEE
Confidence                                   457778865 555  3333322   11111111223333  3579999999999988


Q ss_pred             EeCC
Q 017520          367 VQLS  370 (370)
Q Consensus       367 ~~~~  370 (370)
                      ++++
T Consensus       300 ~d~~  303 (331)
T 3u4y_A          300 FTIS  303 (331)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            8763

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.52  E-value=2e-11  Score=112.35  Aligned_cols=215  Identities=14%  Similarity=0.182  Sum_probs=145.9

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEec-CC---------CceeceEEcCCCc-EEEEeCC--CceE
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFI-DS---------QTLVGLTSTKEGH-LIICDNA--NGLH  141 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~-~~---------~p~~gl~~d~~G~-L~v~~~~--~gi~  141 (370)
                      ..|.+++++++|. +|+++ .++.|..++  +++....... .+         .|. +++++++|+ +|+++..  ..|+
T Consensus        89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~i~  167 (353)
T 3vgz_A           89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPR-ELVADDATNTVYISGIGKESVIW  167 (353)
T ss_dssp             SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEE-EEEEETTTTEEEEEEESSSCEEE
T ss_pred             CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCc-eEEECCCCCEEEEEecCCCceEE
Confidence            3689999999886 89887 468999999  5665333222 11         267 899999986 8888742  4588


Q ss_pred             EEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--
Q 017520          142 KVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--  216 (370)
Q Consensus       142 ~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--  216 (370)
                      .++ .++ ....... .+   ..++.++++++|+ +|+++.                  ++.|+.+|..+++......  
T Consensus       168 ~~d~~~~~~~~~~~~-~~---~~~~~~~~s~dg~~l~~~~~------------------~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          168 VVDGGNIKLKTAIQN-TG---KMSTGLALDSEGKRLYTTNA------------------DGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EEETTTTEEEEEECC-CC---TTCCCCEEETTTTEEEEECT------------------TSEEEEEETTTTEEEEEEECC
T ss_pred             EEcCCCCceEEEecC-CC---CccceEEECCCCCEEEEEcC------------------CCeEEEEECCCCeEEEEEEcC
Confidence            888 556 3322221 11   3578899999986 777753                  3689999998887654332  


Q ss_pred             ---CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHh
Q 017520          217 ---GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKI  290 (370)
Q Consensus       217 ---~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~  290 (370)
                         ....+.++++++||+.+|+++...  |++||+++.+.  ...+.  . +.+.+++++++|+ +|++....       
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~~--~-~~~~~~~~s~dg~~l~v~~~~~-------  293 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNI--LAKVA--A-PESLAVLFNPARNEAYVTHRQA-------  293 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCE--EEEEE--C-SSCCCEEEETTTTEEEEEETTT-------
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcE--EEEEE--c-CCCceEEECCCCCEEEEEECCC-------
Confidence               133467899999999999998764  99999865422  22221  1 2357899999997 88887543       


Q ss_pred             hhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-C-CEEEEEeCC
Q 017520          291 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLT  360 (370)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~~gs~~  360 (370)
                                                 +.+..+|. .++++..+....     .+..+... + ..||+++..
T Consensus       294 ---------------------------~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          294 ---------------------------GKVSVIDAKSYKVVKTFDTPT-----HPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             ---------------------------TEEEEEETTTTEEEEEEECCS-----EEEEEEECTTSCEEEEEEEC
T ss_pred             ---------------------------CeEEEEECCCCeEEEEEecCC-----CCCeEEEcCCCCEEEEEEcc
Confidence                                       35788886 577777776533     23444443 4 459998776

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.51  E-value=6.8e-12  Score=112.77  Aligned_cols=212  Identities=14%  Similarity=0.166  Sum_probs=143.5

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecC--CCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeecCCcccccc
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYVNGSKLRFA  163 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~~g~~~~~~  163 (370)
                      +..|++++.++.|+.++  +|+...-....  ..++ +++++++|+++++ ...+++.++++| +..-.....+   ..+
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~-~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~~---~~~   79 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECN-SVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPAG---CEM   79 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCC-EEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCTT---CEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCc-CeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCCC---ccc
Confidence            34455555889999999  78765443333  2578 8999999999994 467899999877 3322222111   245


Q ss_pred             cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cC----CCCccceEEccCCCEEEEEe
Q 017520          164 NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DG----FYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       164 ~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~----~~~p~gi~~~~dg~~l~v~~  237 (370)
                      +.+.+.++|++++++..                ..++++.+|++++.+..+.  ..    ...+.+++.+++|+ ++++.
T Consensus        80 ~~~~~~~dG~~lv~~~~----------------~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~  142 (276)
T 3no2_A           80 QTARILPDGNALVAWCG----------------HPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPL  142 (276)
T ss_dssp             EEEEECTTSCEEEEEES----------------TTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEE
T ss_pred             cccEECCCCCEEEEecC----------------CCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEe
Confidence            67788899999999752                1468899998755444332  11    23467788999999 55555


Q ss_pred             CC-c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCC
Q 017520          238 SW-K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLG  315 (370)
Q Consensus       238 ~~-~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (370)
                      .. + |..||.+|..   ...+  ..++.|.......+|+++++...+                                
T Consensus       143 ~~~~~v~~~d~~G~~---~w~~--~~~~~~~~~~~~~~g~~~v~~~~~--------------------------------  185 (276)
T 3no2_A          143 FATSEVREIAPNGQL---LNSV--KLSGTPFSSAFLDNGDCLVACGDA--------------------------------  185 (276)
T ss_dssp             TTTTEEEEECTTSCE---EEEE--ECSSCCCEEEECTTSCEEEECBTT--------------------------------
T ss_pred             cCCCEEEEECCCCCE---EEEE--ECCCCccceeEcCCCCEEEEeCCC--------------------------------
Confidence            44 4 9999977531   2222  223457788899999999987654                                


Q ss_pred             CceEEEEECCC-CcEEEEEeCCC--CCccccceeEEE-ECCEEEEEeCCC
Q 017520          316 GGAHLIHVAED-GTIIRNLVDPT--GQLMSFVTSGLQ-VDNHLYVISLTS  361 (370)
Q Consensus       316 ~~g~v~~~~~~-g~~~~~~~~~~--g~~~~~~t~~~~-~~g~L~~gs~~~  361 (370)
                        +.|+.+|++ |++++.+...+  +..+..++.+.. .+|++|+++..+
T Consensus       186 --~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          186 --HCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             --SEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             --CeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence              469999998 99999997532  323444555554 469999999754

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.50  E-value=2.2e-11  Score=109.39  Aligned_cols=228  Identities=11%  Similarity=0.078  Sum_probs=148.0

Q ss_pred             eEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEEecC--CCceeceEEcCCCcEEEEeCC--CceEEEcC
Q 017520           71 IKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWKFID--SQTLVGLTSTKEGHLIICDNA--NGLHKVSE  145 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~~~~--~~p~~gl~~d~~G~L~v~~~~--~gi~~~~~  145 (370)
                      +++..+....+.+++++++|++++ +.+++|+.++ +|+...-....  .... +..+.++|++++++..  ..++.+++
T Consensus        29 w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~lv~~~~~~~~v~~vd~  106 (276)
T 3no2_A           29 WEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNALVAWCGHPSTILEVNM  106 (276)
T ss_dssp             EEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCEEEEEESTTEEEEEECT
T ss_pred             EEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCEEEEecCCCCEEEEEeC
Confidence            344433224689999999999999 4567899999 88754433322  2455 7788899999998764  35888888


Q ss_pred             CC--eEEEEeecC-CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCcc
Q 017520          146 DG--VENFLSYVN-GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN  222 (370)
Q Consensus       146 ~g--~~~~~~~~~-g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~  222 (370)
                      +|  +..+..... ..++..++.++++++|++++++.                 .+++|+.+|++.+.+..+ .....|.
T Consensus       107 ~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~-----------------~~~~v~~~d~~G~~~w~~-~~~~~~~  168 (276)
T 3no2_A          107 KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF-----------------ATSEVREIAPNGQLLNSV-KLSGTPF  168 (276)
T ss_dssp             TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-----------------TTTEEEEECTTSCEEEEE-ECSSCCC
T ss_pred             CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-----------------CCCEEEEECCCCCEEEEE-ECCCCcc
Confidence            78  333321111 12234567789999999999975                 357899999984433333 3334678


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeecc-CCC----CCCCceeECCCCCEEEEEecCchhHHHhhhcch
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAE-NLP----GAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  295 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~-~~~----g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  295 (370)
                      ++...++|+ ++++...+  |..+++++.+.  .-.+.. ..+    ..|.++.+.++|++|++..+++...-       
T Consensus       169 ~~~~~~~g~-~~v~~~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~-------  238 (276)
T 3no2_A          169 SSAFLDNGD-CLVACGDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREA-------  238 (276)
T ss_dssp             EEEECTTSC-EEEECBTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTG-------
T ss_pred             ceeEcCCCC-EEEEeCCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccc-------
Confidence            888999998 55555444  99999773221  112211 111    23678889999999999976521000       


Q ss_pred             hHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeE
Q 017520          296 LIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSG  347 (370)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~  347 (370)
                                       .....+.+++++++|++++.|.+...  +..++++
T Consensus       239 -----------------~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~~~~~  271 (276)
T 3no2_A          239 -----------------GKGKHPQLVEIDSEGKVVWQLNDKVK--FGMISTI  271 (276)
T ss_dssp             -----------------GGSCCCSEEEECTTSBEEEEECCTTT--SCCCCEE
T ss_pred             -----------------cccCCceEEEECCCCCEEEEecCccc--ccceeee
Confidence                             00023468999999999999977442  3445544

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.50  E-value=1.7e-12  Score=124.76  Aligned_cols=181  Identities=14%  Similarity=0.159  Sum_probs=124.0

Q ss_pred             CcCCCcceEE-------cCCCc-EEEEecCC-------eEEEEe---CCeEE-----EEEecCCCceeceEEcC-CCcEE
Q 017520           77 SVNHPEDASM-------DKNGV-IYTATRDG-------WIKRLQ---DGTWV-----NWKFIDSQTLVGLTSTK-EGHLI  132 (370)
Q Consensus        77 ~~~~P~~i~~-------d~~G~-l~v~~~~g-------~I~~~~---~g~~~-----~~~~~~~~p~~gl~~d~-~G~L~  132 (370)
                      .+.+|.+|++       |++|+ ||+++..+       .|+.++   +|.+.     ........|+ ++++++ +|.||
T Consensus       184 ~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~-giavdp~~g~LY  262 (496)
T 3kya_A          184 PTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCN-GATIHPINGELY  262 (496)
T ss_dssp             SCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCC-CEEECTTTCCEE
T ss_pred             ccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCce-EEEEcCCCCeEE
Confidence            4567999999       99887 99999543       388886   35552     1222456789 999998 67899


Q ss_pred             EEeCCCc-eEEEc-C-------CC-e------------EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccce
Q 017520          133 ICDNANG-LHKVS-E-------DG-V------------ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYC  189 (370)
Q Consensus       133 v~~~~~g-i~~~~-~-------~g-~------------~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~  189 (370)
                      +++...+ |++++ .       ++ .            +.+... ..  ...+..|+++++|+ |||+|.          
T Consensus       263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~--~~~p~~ia~~p~G~~lYvaD~----------  329 (496)
T 3kya_A          263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-AD--PSWEFQIFIHPTGKYAYFGVI----------  329 (496)
T ss_dssp             EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SS--SSCCEEEEECTTSSEEEEEET----------
T ss_pred             EEECCCCEEEEEecccccccccCceeecccccccccccceeEec-CC--CCCceEEEEcCCCCEEEEEeC----------
Confidence            9998855 99999 5       45 4            122211 11  23578999999998 899997          


Q ss_pred             ecccccCCCceEEEEeCC--CCeE---EEEec---------------CCCCcc-ceEEc-------cCCCEEEEEeCCc-
Q 017520          190 LDILEGKPHGQLLKYDPS--SNIT---TLVAD---------------GFYFAN-GVALS-------RDEDYVVVCESWK-  240 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~--t~~~---~~~~~---------------~~~~p~-gi~~~-------~dg~~l~v~~~~~-  240 (370)
                             .+.+|++++.+  ++.+   ..++.               .+..|. |++++       .+|+ ||++++.+ 
T Consensus       330 -------~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~-lyVaD~~N~  401 (496)
T 3kya_A          330 -------NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYD-FYFVDRLNF  401 (496)
T ss_dssp             -------TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEE-EEEEEGGGT
T ss_pred             -------CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCe-EEEEECCCC
Confidence                   35688886543  3332   22321               245688 78887       4555 99999987 


Q ss_pred             -EEEEEeCCCCCCceeeecc-----------------C------CCCCCCceeECCC-CCEEEEEecC
Q 017520          241 -CRKYWLKGERKGKLETFAE-----------------N------LPGAPDNINLAPD-GTFWIAIIKL  283 (370)
Q Consensus       241 -l~~~~~~~~~~~~~~~~~~-----------------~------~~g~p~~i~~d~~-G~lwv~~~~~  283 (370)
                       |++++.+|.    ...+..                 .      .-..|.+|++|++ |+|||+....
T Consensus       402 rIr~i~~~G~----v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N  465 (496)
T 3kya_A          402 CVRKVTPEGI----VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG  465 (496)
T ss_dssp             EEEEECTTCB----EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEeCCCC----EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC
Confidence             999986542    222211                 0      0124888999996 9999999765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.46  E-value=1.8e-12  Score=120.19  Aligned_cols=184  Identities=13%  Similarity=0.164  Sum_probs=126.3

Q ss_pred             CCcCCCcceEEcCCCcEEEEec------CCeEEEEe--CCeE-EEEEec------CCCceeceEEcC-CCcEEEEeC---
Q 017520           76 GSVNHPEDASMDKNGVIYTATR------DGWIKRLQ--DGTW-VNWKFI------DSQTLVGLTSTK-EGHLIICDN---  136 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~~------~g~I~~~~--~g~~-~~~~~~------~~~p~~gl~~d~-~G~L~v~~~---  136 (370)
                      +.+..|.+|++|++|+||+.+.      .++|++++  +|++ +.+...      ...+. ++++++ +|.+|+++.   
T Consensus        64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~-~v~vd~~~g~~yvtd~~~~  142 (343)
T 2qe8_A           64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVN-DLAVDLIHNFVYISDPAPD  142 (343)
T ss_dssp             CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCC-EEEEETTTTEEEEEECCSG
T ss_pred             cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccc-eEEEecCCCEEEEEcCccC
Confidence            3467899999999999999983      47899999  5774 444321      13467 999996 468999986   


Q ss_pred             C-CceEEEc-CCC-eEEEEee------------cCCccc-------------ccccceEEcCCC-cEEEEeCCCCCCCcc
Q 017520          137 A-NGLHKVS-EDG-VENFLSY------------VNGSKL-------------RFANDVVEASDG-SLYFTVSSSKYLPHE  187 (370)
Q Consensus       137 ~-~gi~~~~-~~g-~~~~~~~------------~~g~~~-------------~~~~~l~~d~~G-~l~v~d~~~~~~~~~  187 (370)
                      . .+|+.++ .+| ...+...            ..|..+             ..+++|++++|| .||+++..       
T Consensus       143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~-------  215 (343)
T 2qe8_A          143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH-------  215 (343)
T ss_dssp             GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS-------
T ss_pred             CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC-------
Confidence            3 6788898 556 3332211            011111             246899999999 59999763       


Q ss_pred             ceecccccCCCceEEEEeCCC---C---------eEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEe-CCCCCC
Q 017520          188 YCLDILEGKPHGQLLKYDPSS---N---------ITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWL-KGERKG  252 (370)
Q Consensus       188 ~~~~~~~~~~~g~l~~~d~~t---~---------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~-~~~~~~  252 (370)
                                ..+|++++.+.   +         .+... .....|.|+++|++|+ +|+++...  |.+|+. ++    
T Consensus       216 ----------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~~g~pdgia~d~~G~-l~va~~~~~~V~~~d~~~G----  279 (343)
T 2qe8_A          216 ----------STSMYRIKSADLSNLQLTDAELGSKIERY-SEKPICDGISIDKDHN-IYVGDLAHSAIGVITSADR----  279 (343)
T ss_dssp             ----------CSEEEEEEHHHHTCTTCCHHHHHTTCEEE-EECCSCSCEEECTTCC-EEEEEGGGTEEEEEETTTT----
T ss_pred             ----------CCeEEEEEHHHhcCCCCChhhhhcceEec-ccCCCCceEEECCCCC-EEEEccCCCeEEEEECCCC----
Confidence                      34788887421   1         01111 2234799999999997 99999866  999997 43    


Q ss_pred             ceeeeccC-CCCCCCceeECCCCCEEEEEecC
Q 017520          253 KLETFAEN-LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       253 ~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +...+... ....|++++++++|++|+++...
T Consensus       280 ~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~  311 (343)
T 2qe8_A          280 AYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL  311 (343)
T ss_dssp             EEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred             CEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence            33333321 12368999999999999998754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.45  E-value=1.5e-11  Score=114.49  Aligned_cols=160  Identities=12%  Similarity=0.117  Sum_probs=107.2

Q ss_pred             eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEEeec-CCcccccccceEEcCC----CcEEEEeCCC
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFLSYV-NGSKLRFANDVVEASD----GSLYFTVSSS  181 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~~~~-~g~~~~~~~~l~~d~~----G~l~v~d~~~  181 (370)
                      +++.+......|. +|+++++|+|||++..+.|++++ +| .+.+.... .......+++|+++++    |.||+++...
T Consensus        22 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           22 RVEEVVGGLEVPW-ALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             CEEEEECCCSCEE-EEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEEECCCCCce-EEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            4556666667899 99999999999999877788888 66 44443221 1112457899999998    7999997520


Q ss_pred             CCCCccceecccccCCCceEEEEeCCCCe---EEEEec-------CCCCccceEEccCCCEEEEEeC-------------
Q 017520          182 KYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVAD-------GFYFANGVALSRDEDYVVVCES-------------  238 (370)
Q Consensus       182 ~~~~~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~-------~~~~p~gi~~~~dg~~l~v~~~-------------  238 (370)
                      .            .....+|++++.+.+.   .+.+..       ....++++++++||. ||++..             
T Consensus       100 ~------------~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~  166 (352)
T 2ism_A          100 E------------GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLAS  166 (352)
T ss_dssp             T------------TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred             C------------CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence            0            0012578999876442   222222       234678999999996 999862             


Q ss_pred             -Cc-EEEEEeCCCCC----------CceeeeccCCCCCCCceeECC-CCCEEEEEecC
Q 017520          239 -WK-CRKYWLKGERK----------GKLETFAENLPGAPDNINLAP-DGTFWIAIIKL  283 (370)
Q Consensus       239 -~~-l~~~~~~~~~~----------~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~  283 (370)
                       .+ |+|+++++...          ...+.+...+ ..|.++++|+ +|+||++..+.
T Consensus       167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~  223 (352)
T 2ism_A          167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGP  223 (352)
T ss_dssp             SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC
T ss_pred             CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCC
Confidence             13 99999876210          1222332222 2489999999 88999999765

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.45  E-value=5.1e-11  Score=109.88  Aligned_cols=184  Identities=15%  Similarity=0.170  Sum_probs=118.8

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe---CCeEEEEEec---C---------CCceeceEEcCCCcEEEEeCCC-ce
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ---DGTWVNWKFI---D---------SQTLVGLTSTKEGHLIICDNAN-GL  140 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~---~g~~~~~~~~---~---------~~p~~gl~~d~~G~L~v~~~~~-gi  140 (370)
                      ..|.+++++++|+ ||+++ .++.|..++   +|+.+.....   .         ..+. +++++++|++|+++... .+
T Consensus        86 ~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           86 TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCEEEEETTTTEE
T ss_pred             CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcEEEEeCCCCEE
Confidence            5799999999996 88887 678888887   4554433221   1         1366 79999999999988764 46


Q ss_pred             EEEc-C-CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEE--EeCCCCeEEEE
Q 017520          141 HKVS-E-DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDPSSNITTLV  214 (370)
Q Consensus       141 ~~~~-~-~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~--~d~~t~~~~~~  214 (370)
                      ..++ . +| +....... ......++.+++++||+ +|+++..                 .+.+..  ++..+++.+..
T Consensus       165 ~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~v~~~~-----------------~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAFLAGEL-----------------SSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             EEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTTTEEEEE
T ss_pred             EEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCceEEe
Confidence            6666 3 56 44332211 11123677899999997 8887652                 244444  44445655432


Q ss_pred             ec--C-------CCCccceEEccCCCEEEEEeCCc--EEEEEeCCC-CCCceeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520          215 AD--G-------FYFANGVALSRDEDYVVVCESWK--CRKYWLKGE-RKGKLETFAENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       215 ~~--~-------~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~-~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      ..  .       ...+.++++++||+.+|++....  |.+|+++.. .......+ ......|.++++++||+ +|++..
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEc
Confidence            21  1       13467799999999999988744  888888632 11111111 12233589999999997 777765


Q ss_pred             c
Q 017520          282 K  282 (370)
Q Consensus       282 ~  282 (370)
                      .
T Consensus       306 ~  306 (347)
T 3hfq_A          306 N  306 (347)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.41  E-value=5.5e-12  Score=121.21  Aligned_cols=169  Identities=15%  Similarity=0.170  Sum_probs=116.9

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEecCC-eEEEEe--CCeEEEEEe---------cCCCceeceEEcC----CCcEE
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATRDG-WIKRLQ--DGTWVNWKF---------IDSQTLVGLTSTK----EGHLI  132 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g-~I~~~~--~g~~~~~~~---------~~~~p~~gl~~d~----~G~L~  132 (370)
                      .+++++.+ +..|.+|+++++|+|||++..| +|++++  +|+.+.+..         ..+.++ ||++++    +|.||
T Consensus        18 ~~~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEEE
Confidence            44566665 7899999999999999999765 799998  576655432         123467 999998    68899


Q ss_pred             EEeCC-------------CceEEEc-C--CC-e---EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCC-cccee-
Q 017520          133 ICDNA-------------NGLHKVS-E--DG-V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP-HEYCL-  190 (370)
Q Consensus       133 v~~~~-------------~gi~~~~-~--~g-~---~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~-~~~~~-  190 (370)
                      ++...             ..|++++ .  ++ +   +.+....+....+..+.|++++||+|||+........ ...+. 
T Consensus        96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~  175 (454)
T 1cru_A           96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (454)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCccccccc
Confidence            98742             3688887 2  22 2   3344333333456789999999999999965311100 00000 


Q ss_pred             -------------cccccCCCceEEEEeCCCC-----------eEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          191 -------------DILEGKPHGQLLKYDPSSN-----------ITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       191 -------------~~~~~~~~g~l~~~d~~t~-----------~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                                   .-......|.|+|+++++.           ..++++.++.+|.|++++++|+ ||+++.+.
T Consensus       176 ~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g~  248 (454)
T 1cru_A          176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQGP  248 (454)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEECS
T ss_pred             cccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecCC
Confidence                         0000123689999999865           4577888999999999999877 99999753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.41  E-value=2.9e-10  Score=106.00  Aligned_cols=242  Identities=14%  Similarity=0.080  Sum_probs=142.0

Q ss_pred             cCCCcceEEcCCCc-EEEEecCCeEEEEe---CCeEEEEEe--cCCCceeceEEcCCCc-EEE--Ee-------------
Q 017520           78 VNHPEDASMDKNGV-IYTATRDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGH-LII--CD-------------  135 (370)
Q Consensus        78 ~~~P~~i~~d~~G~-l~v~~~~g~I~~~~---~g~~~~~~~--~~~~p~~gl~~d~~G~-L~v--~~-------------  135 (370)
                      ...|..++++++|+ ||+++.+ .|..|+   +|+......  ..+.|. ++++++||+ ||+  ++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999997 8888766 788887   576544322  224588 899999998 343  33             


Q ss_pred             CCCceEEEc--CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCe
Q 017520          136 NANGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNI  210 (370)
Q Consensus       136 ~~~gi~~~~--~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~  210 (370)
                      ..+.+..++  .+| ...............++.++++|||+ +|+++.                 ..+.|+.||.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~-----------------~~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL-----------------TANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC-----------------CCCEEEEEEECCCCC
Confidence            222344444  456 33222211101124688999999996 777764                 23578888876 666


Q ss_pred             EEEEe--c---CCCCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCce----eeeccCCC----C---------CCC
Q 017520          211 TTLVA--D---GFYFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKL----ETFAENLP----G---------APD  266 (370)
Q Consensus       211 ~~~~~--~---~~~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~----~~~~~~~~----g---------~p~  266 (370)
                      .+.+.  .   ....|.++++++||+.+|++... + |.+|+++.. .+..    ..+. ..+    +         .+.
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~-~g~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~  257 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA-THMPVYTHHSFP-LIPPGIPDRDPETGKGLYRA  257 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT-TCCEEEEEEEEE-SSCTTCCCBCTTTSSBSEEE
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCC-CCcEEEccceEE-cCCCCcCCcccccccccccc
Confidence            54321  1   14568899999999999998864 3 777766421 1121    1111 111    1         366


Q ss_pred             cee-ECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEE---EeCCCCCcc
Q 017520          267 NIN-LAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRN---LVDPTGQLM  341 (370)
Q Consensus       267 ~i~-~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~---~~~~~g~~~  341 (370)
                      +++ +++||+ +|++.......                           ....-.++.++.+|++...   ....... .
T Consensus       258 ~i~~~spdG~~l~v~~~~~~~~---------------------------~~~~i~v~~~~~~g~~~~~~~~~~~~~~~-~  309 (365)
T 1jof_A          258 DVCALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSG-G  309 (365)
T ss_dssp             EEEEECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCC-T
T ss_pred             cEEEECCCCCEEEEECCCCCCC---------------------------CCCeEEEEEECCCCCEEEeeeeeecCCCC-c
Confidence            789 999996 67776543100                           0001234555556776542   2221111 1


Q ss_pred             ccceeEEE---ECCEEEEEeCCCCeEEEEeC
Q 017520          342 SFVTSGLQ---VDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       342 ~~~t~~~~---~~g~L~~gs~~~~~i~~~~~  369 (370)
                      ..+ .+-.   +++.||+++..++.|.++++
T Consensus       310 ~~~-a~sp~~~dg~~l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          310 HSN-AVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             TCC-CEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ccc-eecCCCcCCCEEEEEEcCCCeEEEEEE
Confidence            111 1223   35789999888888887764

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.40  E-value=7e-10  Score=103.66  Aligned_cols=227  Identities=15%  Similarity=0.167  Sum_probs=154.1

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEE
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~  150 (370)
                      ..|.+++++++|. ||++. .++.|..++  +++..........+. +++++++|+ ||++... +.|..++ .++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            3688999999986 66655 789999999  677655555555788 999999997 7777655 5677788 556 322


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      ....  +   ..+..++++++|+ +|++..                 ..+.|+.+|..+++..........+..++++++
T Consensus       111 ~~~~--~---~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT--G---KSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC--S---SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC--C---CCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2221  1   3568899999996 777754                 357899999988877665555567889999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      ++.+|++....  |..||+...+   ..... .....+..++++++|+ +|++....                       
T Consensus       169 g~~l~~~~~~~~~v~~~d~~~~~---~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~-----------------------  221 (391)
T 1l0q_A          169 GTKVYVANFDSMSISVIDTVTNS---VIDTV-KVEAAPSGIAVNPEGTKAYVTNVDK-----------------------  221 (391)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTE---EEEEE-ECSSEEEEEEECTTSSEEEEEEECS-----------------------
T ss_pred             CCEEEEEeCCCCEEEEEECCCCe---EEEEE-ecCCCccceEECCCCCEEEEEecCc-----------------------
Confidence            99888886654  9999976532   21111 1233467789999996 66665311                       


Q ss_pred             cccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~~gs~~~~~i~~~~~  369 (370)
                               ..+.+..+|. .++.+..+....     .+..+... + ..||+++-..+.|.++++
T Consensus       222 ---------~~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~s~~~d~~v~v~d~  273 (391)
T 1l0q_A          222 ---------YFNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFXNTVSVIDT  273 (391)
T ss_dssp             ---------SCCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ---------CCCcEEEEECCCCeEEEEEecCC-----CccEEEEccCCCEEEEEcCCCCEEEEEEC
Confidence                     0135777775 466666665432     23344333 3 468788777777777765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.40  E-value=2.8e-10  Score=103.88  Aligned_cols=222  Identities=13%  Similarity=0.091  Sum_probs=144.6

Q ss_pred             CCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-e-EEEEeecCCcc
Q 017520           88 KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSK  159 (370)
Q Consensus        88 ~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~-~~~~~~~~g~~  159 (370)
                      ..+.+|++. .++.|..++  +++..........+. +++++++|+ ||+++.. ..|+.++ .++ . ......  +  
T Consensus         8 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~--   82 (331)
T 3u4y_A            8 TSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE--G--   82 (331)
T ss_dssp             CCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE--C--
T ss_pred             CCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc--C--
Confidence            456788887 678999999  677655444445566 899999997 8888764 5688888 556 4 332221  1  


Q ss_pred             cccccc-eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC
Q 017520          160 LRFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       160 ~~~~~~-l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                       ..+.. ++++++|+..++...              ....+.|..+|.++++..........|+++++++||+.+|+++.
T Consensus        83 -~~~~~~~~~s~dg~~l~~~~~--------------~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           83 -QSSMADVDITPDDQFAVTVTG--------------LNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             -SSCCCCEEECTTSSEEEECCC--------------SSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEE
T ss_pred             -CCCccceEECCCCCEEEEecC--------------CCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEec
Confidence             24556 999999974444321              00112899999988877655555567899999999998999876


Q ss_pred             C--c-EEEEEeCCCCC-Cce-eeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccc
Q 017520          239 W--K-CRKYWLKGERK-GKL-ETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  312 (370)
Q Consensus       239 ~--~-l~~~~~~~~~~-~~~-~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (370)
                      .  . |..|+++.... ... .... .....|.+++++++|+ +|++....                             
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~-----------------------------  197 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIG-----------------------------  197 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTT-----------------------------
T ss_pred             CCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCC-----------------------------
Confidence            4  3 88888764311 011 1111 2233578899999997 88887543                             


Q ss_pred             cCCCceEEEEECC-CCcE---EEEEeCCCCCccccceeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 017520          313 TLGGGAHLIHVAE-DGTI---IRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       313 ~~~~~g~v~~~~~-~g~~---~~~~~~~~g~~~~~~t~~~~~-~-g~L~~gs~~~~~i~~~~~  369 (370)
                           +.+..+|. .++.   +..+....     .+..+... + ..||+++...+.|.++++
T Consensus       198 -----~~v~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~l~v~~~~~~~i~~~d~  250 (331)
T 3u4y_A          198 -----NSIGILETQNPENITLLNAVGTNN-----LPGTIVVSRDGSTVYVLTESTVDVFNFNQ  250 (331)
T ss_dssp             -----TEEEEEECSSTTSCEEEEEEECSS-----CCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred             -----CeEEEEECCCCcccceeeeccCCC-----CCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence                 34666775 4666   55555321     23333333 3 458888777777777764

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.39  E-value=2.3e-11  Score=111.89  Aligned_cols=175  Identities=12%  Similarity=0.112  Sum_probs=122.4

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecC-----CCceeceEEcCCCcEEEEeCC-------CceEEEc
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-----SQTLVGLTSTKEGHLIICDNA-------NGLHKVS  144 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~-----~~p~~gl~~d~~G~L~v~~~~-------~gi~~~~  144 (370)
                      ..|.+++++++|++|+++.+ +|++++  +|+++.+....     .++. ++++|++|++|+++..       .+|++++
T Consensus        90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~  167 (326)
T 2ghs_A           90 FMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSN-DGRMHPSGALWIGTMGRKAETGAGSIYHVA  167 (326)
T ss_dssp             SCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEE-EEEECTTSCEEEEEEETTCCTTCEEEEEEE
T ss_pred             CcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCC-CEEECCCCCEEEEeCCCcCCCCceEEEEEe
Confidence            36788999999999999854 599999  67776664321     3577 8999999999998742       4799998


Q ss_pred             CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC--CC-eE---EEEe-
Q 017520          145 EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS--SN-IT---TLVA-  215 (370)
Q Consensus       145 ~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~--t~-~~---~~~~-  215 (370)
                       +| ++.+...     ...++++++++||+ +|+++.                 ..++|+++|.+  ++ ..   +.+. 
T Consensus       168 -~g~~~~~~~~-----~~~~~~i~~s~dg~~lyv~~~-----------------~~~~I~~~d~~~~~Gl~~~~~~~~~~  224 (326)
T 2ghs_A          168 -KGKVTKLFAD-----ISIPNSICFSPDGTTGYFVDT-----------------KVNRLMRVPLDARTGLPTGKAEVFID  224 (326)
T ss_dssp             -TTEEEEEEEE-----ESSEEEEEECTTSCEEEEEET-----------------TTCEEEEEEBCTTTCCBSSCCEEEEE
T ss_pred             -CCcEEEeeCC-----CcccCCeEEcCCCCEEEEEEC-----------------CCCEEEEEEcccccCCcccCceEEEE
Confidence             77 5544322     23578999999995 899975                 24689999864  45 31   2222 


Q ss_pred             --cCCCCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCceeeeccCCCCCCCceeEC-CCC-CEEEEEecC
Q 017520          216 --DGFYFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKLETFAENLPGAPDNINLA-PDG-TFWIAIIKL  283 (370)
Q Consensus       216 --~~~~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d-~~G-~lwv~~~~~  283 (370)
                        .....|.+++++++|+ +|++... + |.+|++++.   ....+. .....|..++++ +++ .+|+++...
T Consensus       225 ~~~~~~~p~gi~~d~~G~-lwva~~~~~~v~~~d~~g~---~~~~i~-~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          225 STGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGN---HIARYE-VPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             CTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCC---EEEEEE-CSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCCCCCCCeeEECCCCC-EEEEEeCCCEEEEECCCCC---EEEEEE-CCCCCcEEEEEecCCCCEEEEEecCC
Confidence              1234688999999998 8888754 3 999987543   122221 111246778887 665 599998664

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.38  E-value=2e-10  Score=106.85  Aligned_cols=162  Identities=9%  Similarity=0.050  Sum_probs=106.8

Q ss_pred             eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEEEee-cCCcccccccceEEcCC----CcEEEEeCC-C
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSY-VNGSKLRFANDVVEASD----GSLYFTVSS-S  181 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~~~~-~~g~~~~~~~~l~~d~~----G~l~v~d~~-~  181 (370)
                      +++.+......|. +|+++++|+|||++..+.|++++++|.+.+... ........+.+|+++++    |.||+++.. .
T Consensus        20 ~~~~va~~l~~P~-~ia~~pdG~l~V~e~~g~I~~~d~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~   98 (354)
T 3a9g_A           20 KISEVASDLEVPW-SIAPLGGGRYLVTERPGRLVLISPSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFA   98 (354)
T ss_dssp             EEEEEECSCSCEE-EEEEEETTEEEEEETTTEEEEECSSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred             EEEEEeCCCCCCe-EEEEcCCCeEEEEeCCCEEEEEeCCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence            3455665667899 999999999999998778999986664222211 11112356889999997    899999641 0


Q ss_pred             CCCCccceecccccCCCceEEEEeCCCC-----eEEEEec-----CCCCccceEEccCCCEEEEEeC-------------
Q 017520          182 KYLPHEYCLDILEGKPHGQLLKYDPSSN-----ITTLVAD-----GFYFANGVALSRDEDYVVVCES-------------  238 (370)
Q Consensus       182 ~~~~~~~~~~~~~~~~~g~l~~~d~~t~-----~~~~~~~-----~~~~p~gi~~~~dg~~l~v~~~-------------  238 (370)
                      .           ......+|+|++.+.+     ..+++..     ....++++++++||. ||++..             
T Consensus        99 ~-----------~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~  166 (354)
T 3a9g_A           99 E-----------GGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSS  166 (354)
T ss_dssp             G-----------GGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTC
T ss_pred             C-----------CCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCC
Confidence            0           0001257899987644     1233222     245688999999997 999852             


Q ss_pred             -Cc-EEEEEeCCCCC-C----ceeeeccCCCCCCCceeECC-CCCEEEEEecC
Q 017520          239 -WK-CRKYWLKGERK-G----KLETFAENLPGAPDNINLAP-DGTFWIAIIKL  283 (370)
Q Consensus       239 -~~-l~~~~~~~~~~-~----~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~  283 (370)
                       .+ |+|++.++... .    ..+.+...+ ..|.++++|+ +|++|++..+.
T Consensus       167 ~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~  218 (354)
T 3a9g_A          167 LAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGP  218 (354)
T ss_dssp             CSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCS
T ss_pred             CCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCC
Confidence             13 99999876310 0    123333222 2589999999 89999999775

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.37  E-value=3.5e-10  Score=103.21  Aligned_cols=182  Identities=13%  Similarity=0.193  Sum_probs=116.5

Q ss_pred             CCCcceEEcCCCc-EEEEecC-CeEEEEe-C---CeEEEEE--ecCCCceeceEEcCCCc-EEEEeCCCc-eEEEc-CCC
Q 017520           79 NHPEDASMDKNGV-IYTATRD-GWIKRLQ-D---GTWVNWK--FIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~-g~I~~~~-~---g~~~~~~--~~~~~p~~gl~~d~~G~-L~v~~~~~g-i~~~~-~~g  147 (370)
                      ..|.+++++++|. ||+++.+ +.|..|+ +   ++.+...  ...+.|. +++++++|+ ||++....+ |..++ .+|
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            4799999999986 8888855 8888877 3   4544332  2234788 999999997 778876544 66666 344


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEEE------ecCC
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTLV------ADGF  218 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~~------~~~~  218 (370)
                       ..........  ...++.++++++|+ +|+++.                 ..+.|..||..+ ++....      ....
T Consensus       117 ~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          117 LPVGVVDVVEG--LDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEEEEEEEECC--CTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccccccC--CCCceEEEECCCCCEEEEecC-----------------CCCEEEEEEecCCCceeeecccccccCCC
Confidence             2222222222  13578899999995 887763                 246788888765 544321      1223


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeeccCCC------CCCCceeECCCCC-EEEEEe
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAENLP------GAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~~~~------g~p~~i~~d~~G~-lwv~~~  281 (370)
                      ..|.++++++|++.+|++....  |..|+++..  +......+. ..+      ..+..++++++|+ +|++..
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-MMPENFSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-CSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc-ccCccccccCCccceEECCCCCEEEEEec
Confidence            4678899999999899887543  888887532  111111111 111      1233589999996 666653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.35  E-value=1.6e-09  Score=100.44  Aligned_cols=234  Identities=17%  Similarity=0.241  Sum_probs=140.1

Q ss_pred             cCCCcceEEcCCCc-EEEEecC----CeEEEEe---C-CeEEEEEe---cCCCceeceEEcCCC-cEEEEeCCCc-eEEE
Q 017520           78 VNHPEDASMDKNGV-IYTATRD----GWIKRLQ---D-GTWVNWKF---IDSQTLVGLTSTKEG-HLIICDNANG-LHKV  143 (370)
Q Consensus        78 ~~~P~~i~~d~~G~-l~v~~~~----g~I~~~~---~-g~~~~~~~---~~~~p~~gl~~d~~G-~L~v~~~~~g-i~~~  143 (370)
                      ...|..++++++|+ ||+++.+    |.|..|+   + |+.+.+..   ....|. .+++  +| .||+++...+ +..+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            46899999999996 8888754    6776555   3 76655432   345678 8888  45 5888876544 5555


Q ss_pred             c--CCC-eEEEEe--ecCC-------cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEE--eCCC
Q 017520          144 S--EDG-VENFLS--YVNG-------SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKY--DPSS  208 (370)
Q Consensus       144 ~--~~g-~~~~~~--~~~g-------~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~t  208 (370)
                      +  .++ +..+..  ...+       .....++.++++|||+ +|+++.                 ..+.+..|  +..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~-----------------~~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL-----------------GTDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC-----------------CCCEEEEEEEcCCC
Confidence            5  344 321111  0111       0123457899999997 888865                 23455555  4444


Q ss_pred             C----e-E-------EEEecCCCCccceEEccCCCEEEEEeCC-c-EEEEEeCCCCCCceeeeccCCC---CCCCceeEC
Q 017520          209 N----I-T-------TLVADGFYFANGVALSRDEDYVVVCESW-K-CRKYWLKGERKGKLETFAENLP---GAPDNINLA  271 (370)
Q Consensus       209 ~----~-~-------~~~~~~~~~p~gi~~~~dg~~l~v~~~~-~-l~~~~~~~~~~~~~~~~~~~~~---g~p~~i~~d  271 (370)
                      +    + +       .........|.++++++||+.+|++... + |.+|++++.+......+. ..+   ..|..++++
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~s  267 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNAQGSGDIHLS  267 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCCCCEEEEEEC
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCCCCcccEEEC
Confidence            3    2 2       1222344568899999999999999854 4 888888643221122221 111   235689999


Q ss_pred             CCCC-EEEEEec-CchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcE--EEEEeCCCCCcccccee
Q 017520          272 PDGT-FWIAIIK-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTI--IRNLVDPTGQLMSFVTS  346 (370)
Q Consensus       272 ~~G~-lwv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~--~~~~~~~~g~~~~~~t~  346 (370)
                      +||+ +|++... .                                ..-.++.+++ +|+.  +..+..  |.   .+..
T Consensus       268 pdg~~l~v~~~~~~--------------------------------~~i~v~~~~~~~g~~~~~~~~~~--g~---~~~~  310 (361)
T 3scy_A          268 PDGKYLYASNRLKA--------------------------------DGVAIFKVDETNGTLTKVGYQLT--GI---HPRN  310 (361)
T ss_dssp             TTSSEEEEEECSSS--------------------------------CEEEEEEECTTTCCEEEEEEEEC--SS---CCCE
T ss_pred             CCCCEEEEECCCCC--------------------------------CEEEEEEEcCCCCcEEEeeEecC--CC---CCce
Confidence            9997 6676654 2                                1123555663 4553  333333  32   2334


Q ss_pred             EEEE-C-CEEEEEeCCCCeEEEEeC
Q 017520          347 GLQV-D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       347 ~~~~-~-g~L~~gs~~~~~i~~~~~  369 (370)
                      +... + ..||+++...+.|.++++
T Consensus       311 ~~~spdg~~l~~~~~~~~~v~v~~~  335 (361)
T 3scy_A          311 FIITPNGKYLLVACRDTNVIQIFER  335 (361)
T ss_dssp             EEECTTSCEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCCCEEEEEE
Confidence            4443 4 469999988888888654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.34  E-value=8.1e-11  Score=107.17  Aligned_cols=179  Identities=13%  Similarity=0.067  Sum_probs=122.7

Q ss_pred             CCCcceEEcCCCcEEEEecC---CeEEEEe--CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEcCC-C-e
Q 017520           79 NHPEDASMDKNGVIYTATRD---GWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVSED-G-V  148 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~---g~I~~~~--~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~-g-~  148 (370)
                      ..|.+|+++++|++|+++..   .+|++++  +|+++.+...  ...+. |++..+++.+|+++.. +.|++++.+ + .
T Consensus        72 ~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~  150 (306)
T 2p4o_A           72 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLN-GITPLSDTQYLTADSYRGAIWLIDVVQPSG  150 (306)
T ss_dssp             SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEE-EEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccC-cccccCCCcEEEEECCCCeEEEEeCCCCcE
Confidence            36999999999999999832   3599987  7887766543  23467 8888877889999864 578999943 3 2


Q ss_pred             EEEE-ee-----cCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-Ce---EEEEecC
Q 017520          149 ENFL-SY-----VNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI---TTLVADG  217 (370)
Q Consensus       149 ~~~~-~~-----~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~---~~~~~~~  217 (370)
                      +... ..     .....+..+++|  +++| .||+++.                 ..++|++|+.+. +.   .+.+. .
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~-----------------~~~~I~~~~~~~~g~~~~~~~~~-~  210 (306)
T 2p4o_A          151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT-----------------EKMLLLRIPVDSTDKPGEPEIFV-E  210 (306)
T ss_dssp             EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET-----------------TTTEEEEEEBCTTSCBCCCEEEE-E
T ss_pred             eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC-----------------CCCEEEEEEeCCCCCCCccEEEe-c
Confidence            3221 11     111234578888  5665 7999986                 357899999764 32   23332 2


Q ss_pred             CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeee--ccCCCCCCCceeEC---CCC-CEEEEEecC
Q 017520          218 FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETF--AENLPGAPDNINLA---PDG-TFWIAIIKL  283 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~--~~~~~g~p~~i~~d---~~G-~lwv~~~~~  283 (370)
                      +..|.|++++++|+ +|+++..+  |.+|+.++.    ....  .......|.+++++   +++ +|||++..+
T Consensus       211 ~~~P~gi~vd~dG~-l~va~~~~~~V~~~~~~G~----~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          211 QTNIDDFAFDVEGN-LYGATHIYNSVVRIAPDRS----TTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             SCCCSSEEEBTTCC-EEEECBTTCCEEEECTTCC----EEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cCCCCCeEECCCCC-EEEEeCCCCeEEEECCCCC----EEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            46799999999998 89999765  999986542    2111  11111358999998   674 799998764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.32  E-value=1.1e-09  Score=96.54  Aligned_cols=190  Identities=11%  Similarity=0.148  Sum_probs=125.0

Q ss_pred             CCcCCCcceEEcCC-CcEEE-EecCCeEEEEe-CCeEEEEEec--CCCceeceEEcCCCcEEEEeCC-CceEEEc--CCC
Q 017520           76 GSVNHPEDASMDKN-GVIYT-ATRDGWIKRLQ-DGTWVNWKFI--DSQTLVGLTSTKEGHLIICDNA-NGLHKVS--EDG  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~-G~l~v-~~~~g~I~~~~-~g~~~~~~~~--~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~--~~g  147 (370)
                      |....+.+|+.|++ +.||+ .+.++.|++++ +|++..-...  ...+- ||+++++|.+||++.. ++++.++  .++
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            44467999999974 67997 55889999999 8775543322  24678 9999999999998755 5677766  344


Q ss_pred             -eEEEEee-cC---CcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeC--CCCeEEEEec---
Q 017520          148 -VENFLSY-VN---GSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP--SSNITTLVAD---  216 (370)
Q Consensus       148 -~~~~~~~-~~---g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~--~t~~~~~~~~---  216 (370)
                       +..+... .+   ........+|++|+++ +||++...                ....||.++.  .+...+....   
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~~~~~  166 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISKDKAL  166 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEECHHH
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeecchhh
Confidence             3322111 11   1122345789999987 79998643                2347888872  2233443311   


Q ss_pred             ----CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCC------CCCCCceeECCCCCEEEEEecC
Q 017520          217 ----GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENL------PGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       217 ----~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~------~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                          ....+.+++++|..+.+|+.....  |..+|.++... ....+....      -..|.||++|++|++||++-.+
T Consensus       167 ~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~-~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n  244 (255)
T 3qqz_A          167 QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI-GEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPN  244 (255)
T ss_dssp             HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE-EEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTT
T ss_pred             ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE-EEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCc
Confidence                244678999999888888877665  99999776421 111111111      1258999999999999997554

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.31  E-value=2.4e-09  Score=105.43  Aligned_cols=228  Identities=8%  Similarity=-0.043  Sum_probs=148.1

Q ss_pred             EEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEcC---CCeEEEEeecCC
Q 017520           85 SMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSE---DGVENFLSYVNG  157 (370)
Q Consensus        85 ~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~~---~g~~~~~~~~~g  157 (370)
                      +++++|.+|++. .++.|..+|  +++..........++ ++++++||+ ||+++.++.|..++.   ++ +.+.....+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~-~~~~~i~~g  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEP-TKVAEIKIG  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-EEEEEEECC
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCC-cEEEEEecC
Confidence            478889999887 678899999  676544444344588 999999995 888887766777774   33 222221122


Q ss_pred             cccccccceEEcC----CCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC------------CCC
Q 017520          158 SKLRFANDVVEAS----DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYF  220 (370)
Q Consensus       158 ~~~~~~~~l~~d~----~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~------------~~~  220 (370)
                         ..+..+++++    ||+ +|+++.                 ..+.|..+|..+++.......            ...
T Consensus       222 ---~~p~~va~sp~~~~dg~~l~v~~~-----------------~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~  281 (543)
T 1nir_A          222 ---IEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPR  281 (543)
T ss_dssp             ---SEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCC
T ss_pred             ---CCcceEEeCCCcCCCCCEEEEEEc-----------------cCCeEEEEeccccccceeecccCcccCccccccCCc
Confidence               3678999999    985 777753                 246788899887765433221            114


Q ss_pred             ccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhH
Q 017520          221 ANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLI  297 (370)
Q Consensus       221 p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~  297 (370)
                      +.++++++++..+|++....  |+.++....+.-....+  .....|.+++++++|+ +|++....              
T Consensus       282 v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i--~~~~~~~~~~~spdg~~l~va~~~~--------------  345 (543)
T 1nir_A          282 VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLHDGGWDSSHRYFMTAANNS--------------  345 (543)
T ss_dssp             EEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE--ECCSSCCCEEECTTSCEEEEEEGGG--------------
T ss_pred             eEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe--ccCcCccCceECCCCCEEEEEecCC--------------
Confidence            56789999999888887655  99999865432121122  1244688999999998 45555432              


Q ss_pred             HHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEEC-CEEEEEeC-CCCeEEEEeCC
Q 017520          298 KHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVD-NHLYVISL-TSNFIGKVQLS  370 (370)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~-g~L~~gs~-~~~~i~~~~~~  370 (370)
                                          +.|..+|. .|+++..+.............+...+ +.+|+.+- ..+.|.+++++
T Consensus       346 --------------------~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~  401 (543)
T 1nir_A          346 --------------------NKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD  401 (543)
T ss_dssp             --------------------TEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             --------------------CeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeC
Confidence                                24677885 57888777642211111122223333 78888764 56788888754

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.30  E-value=2.8e-09  Score=97.16  Aligned_cols=172  Identities=10%  Similarity=0.055  Sum_probs=111.7

Q ss_pred             CCcEEEEe-cCCeEEEEe-C--CeEEEE--EecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-C--CC-eEEEEeecC
Q 017520           89 NGVIYTAT-RDGWIKRLQ-D--GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-E--DG-VENFLSYVN  156 (370)
Q Consensus        89 ~G~l~v~~-~~g~I~~~~-~--g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~--~g-~~~~~~~~~  156 (370)
                      +..+|+++ .++.|..|+ +  ++.+..  ......|. +++++++|+ ||++... +.+..++ .  +| .+.+.....
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~   82 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   82 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCc-eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc
Confidence            45688885 688899998 3  544332  33456788 999999997 8888765 4565555 3  55 444432211


Q ss_pred             CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC---eEEEEecCCCCccceEEccCCCE
Q 017520          157 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN---ITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~---~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      +   ..+..++++++|+ +|++..                 ..+.|..||.+.+   +..........+.++++++|++.
T Consensus        83 ~---~~~~~~~~s~dg~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  142 (343)
T 1ri6_A           83 P---GSLTHISTDHQGQFVFVGSY-----------------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRT  142 (343)
T ss_dssp             S---SCCSEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSE
T ss_pred             C---CCCcEEEEcCCCCEEEEEec-----------------CCCeEEEEECCCCccccccccccCCCCceEEEECCCCCE
Confidence            1   2678899999997 777754                 2466777877322   23333344556899999999999


Q ss_pred             EEEEeC-Cc-EEEEEeCC-CCCCcee--eeccCCCCCCCceeECCCCC-EEEEEe
Q 017520          233 VVVCES-WK-CRKYWLKG-ERKGKLE--TFAENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       233 l~v~~~-~~-l~~~~~~~-~~~~~~~--~~~~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      +|++.. .+ |.+|++.. .+.....  .........|..++++++|+ +|++..
T Consensus       143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            999984 34 99999875 3221111  22112223577899999997 677753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.28  E-value=3.4e-10  Score=100.36  Aligned_cols=194  Identities=15%  Similarity=0.168  Sum_probs=130.4

Q ss_pred             CceeceEEcCCCcEEEEeCC---CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520          118 QTLVGLTSTKEGHLIICDNA---NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (370)
Q Consensus       118 ~p~~gl~~d~~G~L~v~~~~---~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~  192 (370)
                      .|. ||++++||.||+++..   +.|..+| ++| +..-... +.  ..+..+++++ ++++|+++.             
T Consensus        22 f~~-Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~--~~fgeGi~~~-g~~lyv~t~-------------   83 (266)
T 2iwa_A           22 FTQ-GLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DD--SYFGEGLTLL-NEKLYQVVW-------------   83 (266)
T ss_dssp             CEE-EEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CT--TCCEEEEEEE-TTEEEEEET-------------
T ss_pred             Ccc-cEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CC--CcceEEEEEe-CCEEEEEEe-------------
Confidence            478 9999988999998742   4689999 677 3322221 22  1345567776 458999975             


Q ss_pred             cccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CC-CCCCcee
Q 017520          193 LEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LP-GAPDNIN  269 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~-g~p~~i~  269 (370)
                          .++.+++||+++.++.....-. .+.|+.+++||+.+|+++..+ |..+|.++.+....-..... .+ ..|+.+.
T Consensus        84 ----~~~~v~viD~~t~~v~~~i~~g-~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele  158 (266)
T 2iwa_A           84 ----LKNIGFIYDRRTLSNIKNFTHQ-MKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELE  158 (266)
T ss_dssp             ----TCSEEEEEETTTTEEEEEEECC-SSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             ----cCCEEEEEECCCCcEEEEEECC-CCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEE
Confidence                4578999999887654333222 478888999999999998655 99999766432111111111 11 1466777


Q ss_pred             ECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCC--------CC-
Q 017520          270 LAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT--------GQ-  339 (370)
Q Consensus       270 ~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~--------g~-  339 (370)
                      +. +|.+|+.....                                  +.|.++|+ .|+++..+....        +. 
T Consensus       159 ~~-dg~lyvn~~~~----------------------------------~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          159 YI-NGEVWANIWQT----------------------------------DCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             EE-TTEEEEEETTS----------------------------------SEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             EE-CCEEEEecCCC----------------------------------CeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            77 78999998654                                  46899997 688988886531        00 


Q ss_pred             ccccceeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520          340 LMSFVTSGLQV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       340 ~~~~~t~~~~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      .......+...  +++||+++...+.|..+++
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence            01233455554  3689999999999999875

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.28  E-value=4.2e-09  Score=96.94  Aligned_cols=221  Identities=9%  Similarity=0.032  Sum_probs=132.7

Q ss_pred             EEEEEecCCCceeceEEcCCCcEEEEeC-CCceEEEcC-CC-eEEEEee--cCCcccccccceEEcCC----CcEEEEeC
Q 017520          109 WVNWKFIDSQTLVGLTSTKEGHLIICDN-ANGLHKVSE-DG-VENFLSY--VNGSKLRFANDVVEASD----GSLYFTVS  179 (370)
Q Consensus       109 ~~~~~~~~~~p~~gl~~d~~G~L~v~~~-~~gi~~~~~-~g-~~~~~~~--~~g~~~~~~~~l~~d~~----G~l~v~d~  179 (370)
                      ++++......|. +|++.+||+|||++. .+.|++++. +| .+.+...  ........+.+|+++|+    |.||++.+
T Consensus        24 ~~~va~gL~~P~-~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           24 LRTVATGLNSPW-GLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eEEeecCCCCce-EEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            445566677899 999999999999997 466899984 56 5444321  11122457889999984    88999753


Q ss_pred             CCCCCCccceecccccCCCceEEEEeCCCC--------eEEEEec-----CCCCccceEEccCCCEEEEEeC--------
Q 017520          180 SSKYLPHEYCLDILEGKPHGQLLKYDPSSN--------ITTLVAD-----GFYFANGVALSRDEDYVVVCES--------  238 (370)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~-----~~~~p~gi~~~~dg~~l~v~~~--------  238 (370)
                      .               ...++|.|+..+.+        ..+++..     ...+...|++++||. ||++.-        
T Consensus       103 ~---------------~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~Gd~~~~~~~  166 (347)
T 3das_A          103 S---------------ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTGESGDTGLS  166 (347)
T ss_dssp             C---------------SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECBCTTCGGGT
T ss_pred             c---------------CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEECCCCCCccc
Confidence            2               12357888865431        2233322     234566799999997 999842        


Q ss_pred             ------Cc-EEEEEeCCCC-----CCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          239 ------WK-CRKYWLKGER-----KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       239 ------~~-l~~~~~~~~~-----~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                            .+ |+|+++++..     ....+.+...+ ..|.++++|++|+||++.++.+.                   ++
T Consensus       167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~-------------------~d  226 (347)
T 3das_A          167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDT-------------------WD  226 (347)
T ss_dssp             TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSS-------------------CE
T ss_pred             cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCC-------------------Cc
Confidence                  23 9999987641     00123443222 24889999999999999986531                   01


Q ss_pred             cccccccCCCceEEEEEC---CCC--cEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          307 LFSQFITLGGGAHLIHVA---EDG--TIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~---~~g--~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                      .+..+.....||.=++..   ..+  ..+..|.. .   ....+.+...+|.+|++.+.+..|.+++++
T Consensus       227 eln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~-~---~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~  291 (347)
T 3das_A          227 ELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWST-D---EASPSGIAYAEGSVWMAGLRGERLWRIPLK  291 (347)
T ss_dssp             EEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECT-T---TCCEEEEEEETTEEEEEESTTCSEEEEEEE
T ss_pred             eeeEEcCCCEecCCcccCCCCCccccCCcEecCC-C---CCCCcceEEEcCceeeccccCCEEEEEEec
Confidence            110000011111000000   000  01112211 1   124567778899999999999999998763

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.28  E-value=1.2e-09  Score=99.42  Aligned_cols=219  Identities=14%  Similarity=0.048  Sum_probs=138.3

Q ss_pred             CCcceEEcCCC-cEEEEe-cCCeEEEEe--CCeEEEEEecCC------CceeceEEcCCC-cEEEEe------------C
Q 017520           80 HPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDS------QTLVGLTSTKEG-HLIICD------------N  136 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~~~~------~p~~gl~~d~~G-~L~v~~------------~  136 (370)
                      .|.+++++++| .+|++. .++.|+.++  +++.........      .|. +++++++| .||+++            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            49999999998 578777 568899999  666543332222      678 99999999 588875            2


Q ss_pred             CCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE
Q 017520          137 ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (370)
Q Consensus       137 ~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~  213 (370)
                      ...|..++ .++ .......  +   ..+..++++++|+ +|+++                    +.|+.+|.++++...
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEee
Confidence            35688888 555 3222221  1   3577899999996 88772                    469999998887654


Q ss_pred             EecCCCCccceEEccCCCEEEEEeCCc-------------------------EEEEEeCCCCCCceeeeccCCCCCCCce
Q 017520          214 VADGFYFANGVALSRDEDYVVVCESWK-------------------------CRKYWLKGERKGKLETFAENLPGAPDNI  268 (370)
Q Consensus       214 ~~~~~~~p~gi~~~~dg~~l~v~~~~~-------------------------l~~~~~~~~~~~~~~~~~~~~~g~p~~i  268 (370)
                      .......+..+++++|++.+|++....                         |+++|+.+.+.. ...+ ......|.++
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~-~~~~~~~~~~  246 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREV-RIMDVFYFST  246 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEE-EECSSCEEEE
T ss_pred             eeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Eeec-CCCCCceeeE
Confidence            443333344567889988777766443                         356676543221 1111 1222346679


Q ss_pred             eECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccccee
Q 017520          269 NLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTS  346 (370)
Q Consensus       269 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~  346 (370)
                      +++++|+ +|++  .+                                   .+..+|. .++.+..+....     .+..
T Consensus       247 ~~s~dg~~l~~~--~~-----------------------------------~v~~~d~~~~~~~~~~~~~~-----~~~~  284 (337)
T 1pby_B          247 AVNPAKTRAFGA--YN-----------------------------------VLESFDLEKNASIKRVPLPH-----SYYS  284 (337)
T ss_dssp             EECTTSSEEEEE--ES-----------------------------------EEEEEETTTTEEEEEEECSS-----CCCE
T ss_pred             EECCCCCEEEEe--CC-----------------------------------eEEEEECCCCcCcceecCCC-----ceee
Confidence            9999996 6665  22                                   3777775 466666665432     2233


Q ss_pred             EEEE-C-CEEEEEeCCCCeEEEEeC
Q 017520          347 GLQV-D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       347 ~~~~-~-g~L~~gs~~~~~i~~~~~  369 (370)
                      +... + ..||+++. .+.|.++++
T Consensus       285 ~~~s~dg~~l~~~~~-~~~i~v~d~  308 (337)
T 1pby_B          285 VNVSTDGSTVWLGGA-LGDLAAYDA  308 (337)
T ss_dssp             EEECTTSCEEEEESB-SSEEEEEET
T ss_pred             EEECCCCCEEEEEcC-CCcEEEEEC
Confidence            3333 3 45777744 566776664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.25  E-value=1.1e-08  Score=95.33  Aligned_cols=166  Identities=19%  Similarity=0.238  Sum_probs=114.3

Q ss_pred             CcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEEEeecCCccccc
Q 017520           90 GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRF  162 (370)
Q Consensus        90 G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~  162 (370)
                      +.+|++. .++.|..++  +++..........+. +++++++|+ ||++... +.|..++ .++ .......  +   ..
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~---~~   75 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--G---SS   75 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--S---SS
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcc-eEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--C---CC
Confidence            3566655 788999999  666555444555688 999999997 6676543 4577777 566 3322221  1   26


Q ss_pred             ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-
Q 017520          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-  240 (370)
Q Consensus       163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-  240 (370)
                      ++.++++++|+ +|++..                 ..+.|+.+|..+++..........+.++++++|++.+|++.... 
T Consensus        76 v~~~~~spdg~~l~~~~~-----------------~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~  138 (391)
T 1l0q_A           76 PQGVAVSPDGKQVYVTNM-----------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (391)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceEECCCCCEEEEEEC-----------------CCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC
Confidence            78899999996 777754                 34789999999887766555556788999999999888887644 


Q ss_pred             -EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          241 -CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       241 -l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                       |+.||+...+.  ...+.  ....+..++++++|+ +|++...
T Consensus       139 ~v~~~d~~~~~~--~~~~~--~~~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          139 TVSVINTVTKAV--INTVS--VGRSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             EEEEEETTTTEE--EEEEE--CCSSEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEECCCCcE--EEEEe--cCCCcceEEECCCCCEEEEEeCC
Confidence             99999765321  12221  223467889999996 5666543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.21  E-value=1.6e-09  Score=95.97  Aligned_cols=149  Identities=11%  Similarity=0.042  Sum_probs=104.8

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecC-CCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEE
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFID-SQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~-~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~  151 (370)
                      ..+|+++++ ++.||+++ .++.+..+|  +++...-.... +.+. +++.| .+.||+++..+.+..+| ++.  ...+
T Consensus        66 ~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~-glt~D-g~~l~vs~gs~~l~viD~~t~~v~~~I  142 (266)
T 2iwa_A           66 YFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGW-GLATD-GKILYGSDGTSILYEIDPHTFKLIKKH  142 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCC-EEEEC-SSSEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             cceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeE-EEEEC-CCEEEEECCCCeEEEEECCCCcEEEEE
Confidence            467788887 46999999 678999999  56544333334 3344 44443 24799998656788899 444  3333


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--CC-----------
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GF-----------  218 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~-----------  218 (370)
                      .-...+.+...+|.+.+. +|++|+...                 ..+.|.++|++++++.....  ++           
T Consensus       143 ~Vg~~~~p~~~~nele~~-dg~lyvn~~-----------------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~  204 (266)
T 2iwa_A          143 NVKYNGHRVIRLNELEYI-NGEVWANIW-----------------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRD  204 (266)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEET-----------------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTT
T ss_pred             EECCCCcccccceeEEEE-CCEEEEecC-----------------CCCeEEEEECCCCcEEEEEECCCcccccccccccc
Confidence            222234556678999887 789999975                 34789999999988754432  11           


Q ss_pred             -CCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520          219 -YFANGVALSRDEDYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       219 -~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~  248 (370)
                       ..||||+++++++.+|++....  |+.+++..
T Consensus       205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             cCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence             3679999999999999999755  88887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.19  E-value=1.1e-08  Score=96.72  Aligned_cols=176  Identities=13%  Similarity=0.131  Sum_probs=121.4

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEe------cCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKF------IDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~------~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-  147 (370)
                      .|.++++++++.+|++. .++.|..++  +++......      ..+.+. +++++++|++|++... +.|..++ +++ 
T Consensus       124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE-TISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE-EEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee-EEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            57789999988888887 567799999  566554321      123456 7999999999988765 4577777 555 


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceE
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~  225 (370)
                       ...+..  .   ...+..++++++|+ +|++..                 .++.|..+|..+++..........+.+++
T Consensus       203 ~~~~~~~--~---~~~~~~~~~~~~~~~l~~~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~~~~  260 (433)
T 3bws_A          203 YKATVDL--T---GKWSKILLYDPIRDLVYCSNW-----------------ISEDISVIDRKTKLEIRKTDKIGLPRGLL  260 (433)
T ss_dssp             EEEEEEC--S---SSSEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTTTEEEEECCCCSEEEEEE
T ss_pred             EEEEEcC--C---CCCeeEEEEcCCCCEEEEEec-----------------CCCcEEEEECCCCcEEEEecCCCCceEEE
Confidence             333321  1   13678899999986 556653                 34789999998887655555555688999


Q ss_pred             EccCCCEEEEEeC--------Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          226 LSRDEDYVVVCES--------WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       226 ~~~dg~~l~v~~~--------~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                      ++++++.++++..        .+ |+.|++.+.+.  ...+  ..++.+..++++++|+ +|++...
T Consensus       261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~g~~l~~~~~~  323 (433)
T 3bws_A          261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKL--IDTI--GPPGNKRHIVSGNTENKIYVSDMC  323 (433)
T ss_dssp             ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EEEE--EEEECEEEEEECSSTTEEEEEETT
T ss_pred             EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcE--Eeec--cCCCCcceEEECCCCCEEEEEecC
Confidence            9999998888873        44 88999765421  1111  1123467899999995 7777544

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.19  E-value=1.9e-08  Score=95.14  Aligned_cols=246  Identities=11%  Similarity=0.069  Sum_probs=155.9

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~  151 (370)
                      ...+++++++|.+|++. .++.|..|+  +++. ..+......+. +++++++|+ +|++... +.|..++ .++ ....
T Consensus       171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~  249 (433)
T 3bws_A          171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK-ILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK  249 (433)
T ss_dssp             EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE-EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee-EEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE
Confidence            34568888899888776 779999999  4543 33433455678 999999986 6677644 4577788 566 3222


Q ss_pred             EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      .   ..  ...+..++++++|+ +|++......         . ...++.|+.||..+++..........+.++++++++
T Consensus       250 ~---~~--~~~~~~~~~~~~g~~l~~~~~~~~~---------~-~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  314 (433)
T 3bws_A          250 T---DK--IGLPRGLLLSKDGKELYIAQFSASN---------Q-ESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTE  314 (433)
T ss_dssp             C---CC--CSEEEEEEECTTSSEEEEEEEESCT---------T-CSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSST
T ss_pred             e---cC--CCCceEEEEcCCCCEEEEEECCCCc---------c-ccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCC
Confidence            1   11  13478899999995 6666431000         0 013578999999877665444333467889999999


Q ss_pred             CEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCcc
Q 017520          231 DYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  307 (370)
Q Consensus       231 ~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (370)
                      +.+|++....  |..|++++.+.  ...+ . ....+..++++++|+ +|++.........                   
T Consensus       315 ~~l~~~~~~~~~v~v~d~~~~~~--~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~-------------------  371 (433)
T 3bws_A          315 NKIYVSDMCCSKIEVYDLKEKKV--QKSI-P-VFDKPNTIALSPDGKYLYVSCRGPNHPTE-------------------  371 (433)
T ss_dssp             TEEEEEETTTTEEEEEETTTTEE--EEEE-E-CSSSEEEEEECTTSSEEEEEECCCCCTTT-------------------
T ss_pred             CEEEEEecCCCEEEEEECCCCcE--EEEe-c-CCCCCCeEEEcCCCCEEEEEecCCCcccc-------------------
Confidence            9898886544  99999865321  1222 1 233477899999997 7777654210000                   


Q ss_pred             ccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-C-CEEEEEeCCCCeEEEEeCC
Q 017520          308 FSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       308 ~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~~gs~~~~~i~~~~~~  370 (370)
                       ..+......|.+..+|. .++.+..+....     .+..+... + ..|++++.....|.+++++
T Consensus       372 -~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          372 -GYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-----QPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             -CTTSCCSSCCEEEEEETTTTEEEEEEECSS-----SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             -ccccccccceEEEEEECCCCcEEEEecCCC-----CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence             00001223467888985 677777776522     34555543 3 5688888778888887764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.18  E-value=3.6e-09  Score=92.83  Aligned_cols=145  Identities=22%  Similarity=0.221  Sum_probs=104.9

Q ss_pred             CcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEee
Q 017520           81 PEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~  154 (370)
                      .|+|+++ ++.||+.+ .++.++.+|  +++...-....+.+. |++.| .+.||+++....|..+| ++.  ...+.-.
T Consensus        89 geGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~d-g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~  165 (262)
T 3nol_A           89 GEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTHN-DQYLIMSDGTPVLRFLDPESLTPVRTITVT  165 (262)
T ss_dssp             EEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEEC-SSCEEECCSSSEEEEECTTTCSEEEEEECE
T ss_pred             eeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEecC-CCEEEEECCCCeEEEEcCCCCeEEEEEEec
Confidence            4778887 45999999 578899999  566544334455677 88876 35899998666799999 444  3333222


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--C-----------CCCc
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--G-----------FYFA  221 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~-----------~~~p  221 (370)
                      ..+.++..+|.+.+. +|+||+...                 ..+.|.++|++++++....+  +           ...+
T Consensus       166 ~~g~~~~~lNELe~~-~G~lyan~w-----------------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vl  227 (262)
T 3nol_A          166 AHGEELPELNELEWV-DGEIFANVW-----------------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVL  227 (262)
T ss_dssp             ETTEECCCEEEEEEE-TTEEEEEET-----------------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCE
T ss_pred             cCCccccccceeEEE-CCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCce
Confidence            345666788888876 799999875                 34689999999998865432  1           2367


Q ss_pred             cceEEccCCCEEEEEeCCc--EEEEEe
Q 017520          222 NGVALSRDEDYVVVCESWK--CRKYWL  246 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~--l~~~~~  246 (370)
                      ||||++++++.+||+.-.-  ++.+.+
T Consensus       228 NGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          228 NGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             EEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            9999999999999998654  666544

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.17  E-value=2.4e-08  Score=92.85  Aligned_cols=183  Identities=11%  Similarity=0.030  Sum_probs=104.3

Q ss_pred             cEEEEec--CCeEEEEe----CCeEEEEEe----cCCCceeceEEcCCCc-EEEEeCCCceEEEc-C-CC-eEEEEeecC
Q 017520           91 VIYTATR--DGWIKRLQ----DGTWVNWKF----IDSQTLVGLTSTKEGH-LIICDNANGLHKVS-E-DG-VENFLSYVN  156 (370)
Q Consensus        91 ~l~v~~~--~g~I~~~~----~g~~~~~~~----~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~-~g-~~~~~~~~~  156 (370)
                      .+|+|+.  .++|+.+.    +|+++.+..    ....|. .+++++||+ ||+++.. .+..++ . +| ...+.....
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~-~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPIS-WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCS-EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCc-EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeec
Confidence            5888884  25687765    576665433    223678 899999997 8888765 777777 4 67 443322111


Q ss_pred             CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEE-EEe----cCCCCccceEEccC
Q 017520          157 GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITT-LVA----DGFYFANGVALSRD  229 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~-~~~----~~~~~p~gi~~~~d  229 (370)
                      +   ..+..+++++||+ +|+...+.. ....+......  ..+.+..|+.+ .++.. .+.    .....+.+++++||
T Consensus        82 ~---g~~~~~~~spdg~~l~~~~~~~~-~~~~~~~~~~~--~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spd  155 (365)
T 1jof_A           82 G---GHPRANDADTNTRAIFLLAAKQP-PYAVYANPFYK--FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPT  155 (365)
T ss_dssp             C---SSGGGGCTTSCCEEEEEEECSST-TCCEEEEEESS--SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTT
T ss_pred             C---CCCccEEECCCCCEEEEEEecCC-cceeccceeec--CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCC
Confidence            1   1367789999997 344221100 00000000000  12444444443 24332 221    23457899999999


Q ss_pred             CCEEEEEeCCc--EEEEEeC-CCCCCceeeec-cCCCCCCCceeECCCCC-EEEEEe
Q 017520          230 EDYVVVCESWK--CRKYWLK-GERKGKLETFA-ENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~-~~~~~~~~~~~-~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      |+.+|+++.+.  |++|+++ +.+......+. ......|..+++++||+ +|++..
T Consensus       156 G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          156 ETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            99999998754  9999987 33221111111 01134588899999996 677654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.16  E-value=1.8e-09  Score=103.58  Aligned_cols=167  Identities=16%  Similarity=0.245  Sum_probs=108.0

Q ss_pred             ceEecCCCcCCCcceEEcCCCc--EEEEecCCeEEEEe-CCeE--EEE-------Eec-----CCCceeceEEcCC----
Q 017520           70 FIKVGEGSVNHPEDASMDKNGV--IYTATRDGWIKRLQ-DGTW--VNW-------KFI-----DSQTLVGLTSTKE----  128 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~--l~v~~~~g~I~~~~-~g~~--~~~-------~~~-----~~~p~~gl~~d~~----  128 (370)
                      +++++.+ |..|.+|+++++|.  |||+...|+|++++ +|..  ..+       ...     .+..+ ||+++++    
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCC
Confidence            4556665 78999999999985  99999999999998 5532  111       111     23456 8999975    


Q ss_pred             CcEEEEeCC-------------CceEEEc-CC--------C-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCC
Q 017520          129 GHLIICDNA-------------NGLHKVS-ED--------G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLP  185 (370)
Q Consensus       129 G~L~v~~~~-------------~gi~~~~-~~--------g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~  185 (370)
                      +.|||+-..             ..|.++. .+        . .+.+.........+....|++++||+|||+........
T Consensus        84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~  163 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITL  163 (463)
T ss_dssp             CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCH
T ss_pred             CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCC
Confidence            889997431             2566665 21        1 23343322222345677899999999999975411100


Q ss_pred             ccceecccccCCCceEEEEeCCCC--------------------eEEEEecCCCCccceEEccC-----CC-EEEEEeC
Q 017520          186 HEYCLDILEGKPHGQLLKYDPSSN--------------------ITTLVADGFYFANGVALSRD-----ED-YVVVCES  238 (370)
Q Consensus       186 ~~~~~~~~~~~~~g~l~~~d~~t~--------------------~~~~~~~~~~~p~gi~~~~d-----g~-~l~v~~~  238 (370)
                      ......-......|.|+|+|+++.                    ..++++.++++|.|++|+++     |+ ++|.++.
T Consensus       164 ~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          164 DDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            000000001234689999999863                    34678889999999999997     33 5777775

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.14  E-value=3.5e-09  Score=98.41  Aligned_cols=163  Identities=13%  Similarity=0.086  Sum_probs=104.9

Q ss_pred             eEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEcCCC-eE-EEEee--cCCcccccccceEEcC----CCcEEEEe
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSEDG-VE-NFLSY--VNGSKLRFANDVVEAS----DGSLYFTV  178 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~~~g-~~-~~~~~--~~g~~~~~~~~l~~d~----~G~l~v~d  178 (370)
                      +++.+......|. +|+++++|+ |||++..+.|++++.+| .. .+...  ........+.+|+++|    +|.||+++
T Consensus         9 ~~~~va~~l~~P~-~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~   87 (353)
T 2g8s_A            9 NVEVLQDKLDHPW-ALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSY   87 (353)
T ss_dssp             EEEEEEEEESSEE-EEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred             EEEEEECCCCCcE-EEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEE
Confidence            5666666677899 999999999 99999777788888666 33 22211  0011124568999998    58999996


Q ss_pred             CCCCCCCccceecccccCCCceEEEEeCCCC-----eEEEEecC-------CCCccceEEccCCCEEEEEeCC-------
Q 017520          179 SSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-----ITTLVADG-------FYFANGVALSRDEDYVVVCESW-------  239 (370)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-----~~~~~~~~-------~~~p~gi~~~~dg~~l~v~~~~-------  239 (370)
                      .....          ......+|.+++.+.+     ..+++...       ...++++++++||. ||++.-.       
T Consensus        88 ~~~~~----------~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~  156 (353)
T 2g8s_A           88 SEVGD----------DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTA  156 (353)
T ss_dssp             EEECS----------SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGG
T ss_pred             eCCCC----------CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCcc
Confidence            52000          0001347888876432     22333322       34578999999995 9999521       


Q ss_pred             -------c-EEEEEeCCCCC----------CceeeeccCCCCCCCceeECC-CCCEEEEEecC
Q 017520          240 -------K-CRKYWLKGERK----------GKLETFAENLPGAPDNINLAP-DGTFWIAIIKL  283 (370)
Q Consensus       240 -------~-l~~~~~~~~~~----------~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~  283 (370)
                             + |+|+++++...          ...+.+...+ ..|.++++|+ +|++|++..+.
T Consensus       157 q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~  218 (353)
T 2g8s_A          157 QDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGP  218 (353)
T ss_dssp             GCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECS
T ss_pred             CCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCC
Confidence                   2 99999876410          0122332111 2488999999 89999998874

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.14  E-value=4.3e-09  Score=92.39  Aligned_cols=145  Identities=17%  Similarity=0.191  Sum_probs=104.9

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEe
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~  153 (370)
                      ..|+++++. +.||+.+ .++.++.+|  +++...-....+.+. |++.| .+.||+++....|..+| ++.  ...+.-
T Consensus        97 FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~D-g~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A           97 FAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCYW-NGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEEE-TTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEecC-CCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            347788874 5899999 678899999  666544444456678 88876 35899998666799999 454  333322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------------CCC
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFY  219 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--------------~~~  219 (370)
                      ...+.+..++|.|.+. +|+||+...                 ..+.|.++|++++++....+              ...
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw-----------------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIW-----------------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEET-----------------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             CCCCcccccccccEEe-CCEEEEEEC-----------------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            2355566788888886 889999875                 34689999999998765432              123


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEE
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYW  245 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~  245 (370)
                      .+||||++++++.+||+.-.-  ++.+.
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~  263 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWPRLFEVR  263 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCSEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCCCceEEEE
Confidence            679999999998899998644  55554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.14  E-value=1.1e-08  Score=89.00  Aligned_cols=146  Identities=18%  Similarity=0.116  Sum_probs=106.2

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEe
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~  153 (370)
                      ..|+++++ +++||+.+ .++.++.+|  +.+...-....+.+. |++.| .+.||+++....|..+| .+.  ...+.-
T Consensus        66 fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~d-g~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           66 FGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTSD-DSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             CEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEEC-SSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEeeC-CCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            45788887 47899998 678899999  666544444456677 88876 45899999767899999 454  333322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------------CCC
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------GFY  219 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--------------~~~  219 (370)
                      ...+.++..+|.|... +|+||+...                 ....|.++|++++++....+              ...
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw-----------------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~  204 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVW-----------------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTND  204 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEET-----------------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSS
T ss_pred             ccCCcccccceeeEEe-CCEEEEEEC-----------------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCC
Confidence            2355566788888875 889998875                 24689999999998865432              123


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEEe
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYWL  246 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~~  246 (370)
                      .+||||++++++.+||+.-.-  ++.+.+
T Consensus       205 vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          205 VLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence            579999999999999998654  666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.14  E-value=3e-08  Score=90.56  Aligned_cols=216  Identities=18%  Similarity=0.092  Sum_probs=123.6

Q ss_pred             CCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCC-------CceeceEEcCCCc-EEEEeCC----------
Q 017520           80 HPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDS-------QTLVGLTSTKEGH-LIICDNA----------  137 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~-------~p~~gl~~d~~G~-L~v~~~~----------  137 (370)
                      .|.+++++++|+ +|++. .++.|+.++  +++.........       .+. ++++++||+ ||++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            699999999986 78776 678999999  566543333222       267 999999996 7777633          


Q ss_pred             --CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCC-CCCCCccc-eecccccC---------------
Q 017520          138 --NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSS-SKYLPHEY-CLDILEGK---------------  196 (370)
Q Consensus       138 --~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~-~~~~~~~~-~~~~~~~~---------------  196 (370)
                        ..|..++ .++ ..........  ...+..++++++|++|+++.. ..++.... ....+...               
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYF  200 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCC
T ss_pred             CCCeEEEEECCCccccceeeeccC--CCcccceeECCCCcEEEccCcEEEEeCCCCceeccccccccCCccccCccceee
Confidence              4677777 554 2111011011  124678889999998886321 00010000 00000000               


Q ss_pred             ------------------------------CCceEEEEeCCCCeEEEEe--cCCCCccceEEcc-CCCEEEEEeCCcEEE
Q 017520          197 ------------------------------PHGQLLKYDPSSNITTLVA--DGFYFANGVALSR-DEDYVVVCESWKCRK  243 (370)
Q Consensus       197 ------------------------------~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~-dg~~l~v~~~~~l~~  243 (370)
                                                    ....++.+|..+++++.+.  .....+.++++++ |++.+|++ .+.|.+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~  279 (349)
T 1jmx_B          201 WPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAK  279 (349)
T ss_dssp             CCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEE
T ss_pred             ecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEE
Confidence                                          0001112344333333221  1122466788889 99999988 333999


Q ss_pred             EEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEE
Q 017520          244 YWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIH  322 (370)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~  322 (370)
                      ||+++.+.  ...+  ..+..|.+++++++|+ +|++...                                   +.+..
T Consensus       280 ~d~~~~~~--~~~~--~~~~~~~~~~~s~dg~~l~~~~~~-----------------------------------~~v~v  320 (349)
T 1jmx_B          280 YDLKQRKL--IKAA--NLDHTYYCVAFDKKGDKLYLGGTF-----------------------------------NDLAV  320 (349)
T ss_dssp             EETTTTEE--EEEE--ECSSCCCEEEECSSSSCEEEESBS-----------------------------------SEEEE
T ss_pred             EECccCeE--EEEE--cCCCCccceEECCCCCEEEEecCC-----------------------------------CeEEE
Confidence            99765321  1222  1234578899999985 7775322                                   35777


Q ss_pred             ECC-CCcEEEEEeCCCC
Q 017520          323 VAE-DGTIIRNLVDPTG  338 (370)
Q Consensus       323 ~~~-~g~~~~~~~~~~g  338 (370)
                      +|. .++.+..+..+.|
T Consensus       321 ~d~~~~~~~~~~~~~~~  337 (349)
T 1jmx_B          321 FNPDTLEKVKNIKLPGG  337 (349)
T ss_dssp             EETTTTEEEEEEECSSS
T ss_pred             EeccccceeeeeecCCC
Confidence            885 5788888876633

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.12  E-value=1.4e-08  Score=94.01  Aligned_cols=183  Identities=16%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEEEe---CCeEEE----EEec----------CCCceeceEEcCCCc-EEEEeCC-C
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKRLQ---DGTWVN----WKFI----------DSQTLVGLTSTKEGH-LIICDNA-N  138 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~~~---~g~~~~----~~~~----------~~~p~~gl~~d~~G~-L~v~~~~-~  138 (370)
                      ..|..+++ ....||+++ .++.|..++   ++.+..    ....          ...++ +++++++|+ ||+++.. .
T Consensus       100 ~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~  177 (361)
T 3scy_A          100 ADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLH-CVRITPDGKYLLADDLGTD  177 (361)
T ss_dssp             SCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEE-EEEECTTSSEEEEEETTTT
T ss_pred             CCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcce-EEEECCCCCEEEEEeCCCC
Confidence            47888888 344688887 577888888   343221    1111          11246 799999997 8888865 3


Q ss_pred             ceEEEc--C-CC------eEEE--EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          139 GLHKVS--E-DG------VENF--LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       139 gi~~~~--~-~g------~~~~--~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                      .+..++  . .+      +...  ...........++.+++++||+ +|+++.                 ..+.|..|+.
T Consensus       178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~-----------------~~~~v~v~~~  240 (361)
T 3scy_A          178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE-----------------IGGTVIAFRY  240 (361)
T ss_dssp             EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET-----------------TTCEEEEEEE
T ss_pred             EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC-----------------CCCeEEEEEe
Confidence            455554  2 22      1111  0000111124678899999996 888864                 2467888887


Q ss_pred             CCCeEEEEec------CCCCccceEEccCCCEEEEEeCC--c-EEEEEeCC--CCCCceeeeccCCCCCCCceeECCCCC
Q 017520          207 SSNITTLVAD------GFYFANGVALSRDEDYVVVCESW--K-CRKYWLKG--ERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       207 ~t~~~~~~~~------~~~~p~gi~~~~dg~~l~v~~~~--~-l~~~~~~~--~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      ++++.+.+..      ....|.++++++||+.+|+++..  + |..|+++.  .+......+. . ...|.++++++||+
T Consensus       241 ~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~  318 (361)
T 3scy_A          241 ADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGK  318 (361)
T ss_dssp             ETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSC
T ss_pred             cCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCC
Confidence            6676543321      23446799999999999999887  4 88888752  2211111221 2 34689999999997


Q ss_pred             -EEEEEec
Q 017520          276 -FWIAIIK  282 (370)
Q Consensus       276 -lwv~~~~  282 (370)
                       +|++...
T Consensus       319 ~l~~~~~~  326 (361)
T 3scy_A          319 YLLVACRD  326 (361)
T ss_dssp             EEEEEETT
T ss_pred             EEEEEECC
Confidence             7776533

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.10  E-value=3e-08  Score=97.56  Aligned_cols=232  Identities=16%  Similarity=0.116  Sum_probs=143.6

Q ss_pred             CCcceEEcCCC-cEEEEecCCeEEEEe-C---CeEEEEEecCCCceeceEEcC----CCc-EEEEeCC-CceEEEc-CCC
Q 017520           80 HPEDASMDKNG-VIYTATRDGWIKRLQ-D---GTWVNWKFIDSQTLVGLTSTK----EGH-LIICDNA-NGLHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~-~---g~~~~~~~~~~~p~~gl~~d~----~G~-L~v~~~~-~gi~~~~-~~g  147 (370)
                      .|.+++++++| .||+++.++.|..|+ +   ++...-......|. ++++++    ||+ ||+++.. ..|..+| .++
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~  258 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL  258 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence            38899999988 688999889999999 2   33333333556788 999999    895 7888753 5677777 555


Q ss_pred             --eEEEEee---cCC---cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE--Eec
Q 017520          148 --VENFLSY---VNG---SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL--VAD  216 (370)
Q Consensus       148 --~~~~~~~---~~g---~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~--~~~  216 (370)
                        ++.+...   ..+   .+...+..+++++++. +|++..                 ..+.|+.+|..+.+...  ...
T Consensus       259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~g~i~vvd~~~~~~l~~~~i~  321 (543)
T 1nir_A          259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIG  321 (543)
T ss_dssp             CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECTTSSSCEEEEEE
T ss_pred             ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CCCeEEEEEecCCCcceeEEec
Confidence              3333211   011   0112566789999775 555543                 45789999987543211  123


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCCCC-Ccee-ECCC-CCEEEEEecCchhHHHh
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKI  290 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g~p-~~i~-~d~~-G~lwv~~~~~~~~~~~~  290 (370)
                      ...+|.++++++||+++|++....  |.++|.++.+.  ...+. ...| .| .+.. .+++ |.+|++...+       
T Consensus       322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~-------  391 (543)
T 1nir_A          322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLG-------  391 (543)
T ss_dssp             CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSS-------
T ss_pred             cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCC-CCCCCcccCCCCCccEEEeccCC-------
Confidence            346789999999999999987644  88899765432  11111 1111 12 2333 3565 7889886532       


Q ss_pred             hhcchhHHHHHHhCCccccccccCCCceEEEEECCC--------CcEEEEEeCCCCCccccceeEEE--ECCEEEEEeC-
Q 017520          291 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQ--VDNHLYVISL-  359 (370)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--------g~~~~~~~~~~g~~~~~~t~~~~--~~g~L~~gs~-  359 (370)
                                                .+.|..++.+        ++.++.+....+.    ...+..  .+.+||+++. 
T Consensus       392 --------------------------d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~----~~~v~~~pdg~~l~v~~~~  441 (543)
T 1nir_A          392 --------------------------DGSISLIGTDPKNHPQYAWKKVAELQGQGGG----SLFIKTHPKSSHLYVDTTF  441 (543)
T ss_dssp             --------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC----CCCEECCTTCCEEEECCTT
T ss_pred             --------------------------CceEEEEEeCCCCCchhcCeEEEEEEcCCCC----ceEEEcCCCCCcEEEecCC
Confidence                                      1234555432        6788888765432    122222  3468999874 


Q ss_pred             C-----CCeEEEEeC
Q 017520          360 T-----SNFIGKVQL  369 (370)
Q Consensus       360 ~-----~~~i~~~~~  369 (370)
                      +     .+.|+++++
T Consensus       442 ~~~~~~~~~v~v~d~  456 (543)
T 1nir_A          442 NPDARISQSVAVFDL  456 (543)
T ss_dssp             CSSHHHHTCEEEEET
T ss_pred             CCCcccCceEEEEEC
Confidence            2     348888875

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.10  E-value=2.6e-08  Score=87.34  Aligned_cols=190  Identities=11%  Similarity=0.109  Sum_probs=123.7

Q ss_pred             eeceEEcCCCcEEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520          120 LVGLTSTKEGHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       120 ~~gl~~d~~G~L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      . ||.++ ++.||++....   .|.++| ++| +..-.. .+.  ..+..+++++ +++||+.+.               
T Consensus        46 q-GL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~-l~~--~~FgeGit~~-g~~ly~ltw---------------  104 (262)
T 3nol_A           46 E-GFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE-LGK--RYFGEGISDW-KDKIVGLTW---------------  104 (262)
T ss_dssp             E-EEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE-CCT--TCCEEEEEEE-TTEEEEEES---------------
T ss_pred             c-eEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe-cCC--ccceeEEEEe-CCEEEEEEe---------------
Confidence            5 99998 78999987553   588899 677 332222 122  1244556765 358999975               


Q ss_pred             cCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCc-eeeeccCCC-CCCCceeEC
Q 017520          195 GKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGK-LETFAENLP-GAPDNINLA  271 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~-~~~~~~~~~-g~p~~i~~d  271 (370)
                        .++.+++||+++.+...-..-  .+.|..+++|++.||+++..+ |+.+|+.+.+... ...-.+..+ ..++.+...
T Consensus       105 --~~~~v~v~D~~t~~~~~ti~~--~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~  180 (262)
T 3nol_A          105 --KNGLGFVWNIRNLRQVRSFNY--DGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV  180 (262)
T ss_dssp             --SSSEEEEEETTTCCEEEEEEC--SSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE
T ss_pred             --eCCEEEEEECccCcEEEEEEC--CCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE
Confidence              357899999988766433322  236666778888899998655 9999976543211 111111111 223346665


Q ss_pred             CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCC--------ccc
Q 017520          272 PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQ--------LMS  342 (370)
Q Consensus       272 ~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~--------~~~  342 (370)
                       +|.+|+..+..                                  ..|.++|+ .|+++..+....-.        ..+
T Consensus       181 -~G~lyan~w~~----------------------------------~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~  225 (262)
T 3nol_A          181 -DGEIFANVWQT----------------------------------NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID  225 (262)
T ss_dssp             -TTEEEEEETTS----------------------------------SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred             -CCEEEEEEccC----------------------------------CeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence             78999998765                                  36999997 68999988663211        012


Q ss_pred             cceeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520          343 FVTSGLQV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       343 ~~t~~~~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      ....++.+  .++||+.+..=+.+-.+++
T Consensus       226 vlNGIA~dp~~~~lfVTGK~Wp~~~ev~~  254 (262)
T 3nol_A          226 VLNGIAWDKEHHRLFVTGKLWPKVFEITL  254 (262)
T ss_dssp             CEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEECCCCCceEEEEE
Confidence            33455555  3899999999998888765

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.09  E-value=3.8e-07  Score=82.54  Aligned_cols=176  Identities=10%  Similarity=0.068  Sum_probs=116.9

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeE---EEEEecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VE  149 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~---~~~~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~  149 (370)
                      ...++++.++|. +++++.+|.|..++  +++.   ..+........ +++++++|++++ +...+.+..++ +++  ..
T Consensus        99 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~  177 (337)
T 1gxr_A           99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR  177 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCceee
Confidence            356788888885 66677889999999  4442   22233344456 899999987544 55445577777 555  33


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      .+ .   + ....+..++++++|+..++..                 .++.|..||..+++.............++++++
T Consensus       178 ~~-~---~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~  235 (337)
T 1gxr_A          178 QF-Q---G-HTDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPT  235 (337)
T ss_dssp             EE-C---C-CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTT
T ss_pred             ee-e---c-ccCceEEEEECCCCCEEEEEe-----------------cCCcEEEEECCCCceEeeecCCCceEEEEECCC
Confidence            22 1   1 113577899999997666543                 357899999987766544444445678999999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++.++++...+ |..|++...+   ...+. ...+....++++++|++.++...
T Consensus       236 ~~~l~~~~~~~~i~~~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~l~~~~~  285 (337)
T 1gxr_A          236 GEWLAVGMESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCGKWFVSTGK  285 (337)
T ss_dssp             SSEEEEEETTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CCEEEEEcCCCcEEEEECCCCC---eEEEc-CCccceeEEEECCCCCEEEEecC
Confidence            99888888777 9999986542   22222 23344667889999986665543

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.08  E-value=3.5e-08  Score=90.10  Aligned_cols=158  Identities=11%  Similarity=0.050  Sum_probs=97.3

Q ss_pred             ceEEcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCC--CceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-eEEEEe
Q 017520           83 DASMDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDS--QTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        83 ~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~--~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~  153 (370)
                      ++++.+++.+|++. .++.|+.++  +++.........  .|. +++++++|+ +|++... ..|+.++ .++ ......
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            44667788888876 788999999  666544433333  688 999999996 7888754 4588888 566 332222


Q ss_pred             ecC--CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE---EEecCCCCccceEEc
Q 017520          154 YVN--GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT---LVADGFYFANGVALS  227 (370)
Q Consensus       154 ~~~--g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~---~~~~~~~~p~gi~~~  227 (370)
                      ...  +.....++.+++++||+ +|++..........+      ....+.|+.+|.++++..   ........+.+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEccccccccccc------ccCCCeEEEEECCCccccceeeeccCCCcccceeEC
Confidence            111  11123578999999995 676652100000000      001368999998763321   112223357788899


Q ss_pred             cCCCEEEEEeCCcEEEEEeCCC
Q 017520          228 RDEDYVVVCESWKCRKYWLKGE  249 (370)
Q Consensus       228 ~dg~~l~v~~~~~l~~~~~~~~  249 (370)
                      +||+ +|++.. .|+++|+++.
T Consensus       157 ~dg~-l~~~~~-~i~~~d~~~~  176 (349)
T 1jmx_B          157 DDGS-LYVAGP-DIYKMDVKTG  176 (349)
T ss_dssp             TTSC-EEEESS-SEEEECTTTC
T ss_pred             CCCc-EEEccC-cEEEEeCCCC
Confidence            9999 888532 2888887543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.06  E-value=8.8e-07  Score=79.89  Aligned_cols=181  Identities=14%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             CCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--
Q 017520           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--  147 (370)
                      +.-....++++.++|. |.+++.+|.|..++  +++... +........ +++++++|+++++....+ |..++ .++  
T Consensus        21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~   99 (312)
T 4ery_A           21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKC   99 (312)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcE
Confidence            3334567889999886 44566899999999  665443 333344566 899999998666544444 55556 555  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~  226 (370)
                      ...+...     ...+..+++.+++++.++.+                 .++.|..||..+++....... ......+++
T Consensus       100 ~~~~~~~-----~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  157 (312)
T 4ery_A          100 LKTLKGH-----SNYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHF  157 (312)
T ss_dssp             EEEEECC-----SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred             EEEEcCC-----CCCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEE
Confidence            3333211     13567889999998777643                 357899999887765443333 234567899


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +++++.++.+...+ |..||+...+  ....+..........++++++|++.++..
T Consensus       158 ~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          158 NRDGSLIVSSSYDGLCRIWDTASGQ--CLKTLIDDDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTCC--EEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCEEEEEeCCCcEEEEECCCCc--eeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence            99999888777777 8899876432  12222212222234478899998666544

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.05  E-value=3.8e-08  Score=89.31  Aligned_cols=149  Identities=11%  Similarity=0.007  Sum_probs=97.3

Q ss_pred             EEEEecCCeEEEEe--CCeEEEEEecCC---CceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-e-EEEEeecCCcccc
Q 017520           92 IYTATRDGWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-V-ENFLSYVNGSKLR  161 (370)
Q Consensus        92 l~v~~~~g~I~~~~--~g~~~~~~~~~~---~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-~-~~~~~~~~g~~~~  161 (370)
                      ++++..++.|..++  +++.........   .|. +++++++|+ +|++... ..|..++ .++ . ..+.....+....
T Consensus         4 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            45566788999999  666554444444   688 999999994 7888765 4588888 566 3 3332111111112


Q ss_pred             cccceEEcCCC-cEEEEeCCCCCCCccceecccccC-CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC
Q 017520          162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGK-PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       162 ~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      .+..++++++| .+|+++....... .      +.. ..+.|+.+|.++++..........+.++++++||+.+|++ .+
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~-~------~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~  154 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLEL-T------HFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL-GR  154 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECS-S------CEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE-SS
T ss_pred             cccceEECCCCCEEEEEeccccccc-c------cccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe-CC
Confidence            57889999999 5888752100000 0      000 2478999999887765544445578999999999988888 33


Q ss_pred             cEEEEEeCCC
Q 017520          240 KCRKYWLKGE  249 (370)
Q Consensus       240 ~l~~~~~~~~  249 (370)
                      .|+++++.+.
T Consensus       155 ~i~~~d~~~~  164 (337)
T 1pby_B          155 DLHVMDPEAG  164 (337)
T ss_dssp             SEEEEETTTT
T ss_pred             eEEEEECCCC
Confidence            3999998654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.01  E-value=6.1e-08  Score=85.07  Aligned_cols=189  Identities=14%  Similarity=0.123  Sum_probs=123.3

Q ss_pred             eeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccccc
Q 017520          120 LVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEG  195 (370)
Q Consensus       120 ~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~  195 (370)
                      . ||.++ ++.||++.... .|.++| ++|  ...+   .+..  .+..+++++ .++||+.+.                
T Consensus        58 q-GL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~--~FgeGit~~-g~~Ly~ltw----------------  113 (268)
T 3nok_A           58 Q-GLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---RLGN--IFAEGLASD-GERLYQLTW----------------  113 (268)
T ss_dssp             E-EEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---ECTT--CCEEEEEEC-SSCEEEEES----------------
T ss_pred             c-eEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCC--cceeEEEEe-CCEEEEEEc----------------
Confidence            5 89997 57999998764 477788 677  4443   2221  244557775 358999975                


Q ss_pred             CCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC-CC-CCCCceeECC
Q 017520          196 KPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN-LP-GAPDNINLAP  272 (370)
Q Consensus       196 ~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~-g~p~~i~~d~  272 (370)
                       .++.+++||+++.+...-...  .+.|..+++|++.||+++..+ |+.+|+++.+....-..... .+ ..++.+... 
T Consensus       114 -~~~~v~V~D~~Tl~~~~ti~~--~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-  189 (268)
T 3nok_A          114 -TEGLLFTWSGMPPQRERTTRY--SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-  189 (268)
T ss_dssp             -SSCEEEEEETTTTEEEEEEEC--SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             -cCCEEEEEECCcCcEEEEEeC--CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-
Confidence             357899999988776543332  345666667888999999655 99999765432111111111 01 123445555 


Q ss_pred             CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCC---------CCccc
Q 017520          273 DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT---------GQLMS  342 (370)
Q Consensus       273 ~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~---------g~~~~  342 (370)
                      +|.+|+..+..                                  ..|.++|+ .|+++..+....         ....+
T Consensus       190 dG~lyanvw~s----------------------------------~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~  235 (268)
T 3nok_A          190 NGVIYANIWHS----------------------------------SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA  235 (268)
T ss_dssp             TTEEEEEETTC----------------------------------SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred             CCEEEEEECCC----------------------------------CeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence            78999998765                                  36999997 689988875421         00112


Q ss_pred             cceeEEEE--CCEEEEEeCCCCeEEEEeCC
Q 017520          343 FVTSGLQV--DNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       343 ~~t~~~~~--~g~L~~gs~~~~~i~~~~~~  370 (370)
                      ....++.+  .++||+.+..=+.+-.++++
T Consensus       236 vlNGIA~dp~~~rlfVTGK~Wp~~~ev~~~  265 (268)
T 3nok_A          236 VLNGIAVEPGSGRIFMTGKLWPRLFEVRLD  265 (268)
T ss_dssp             CEEEEEECTTTCCEEEEETTCSEEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEeCCCCCceEEEEEE
Confidence            33455554  37899999999998888763

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.01  E-value=2.2e-07  Score=91.56  Aligned_cols=226  Identities=8%  Similarity=-0.049  Sum_probs=142.2

Q ss_pred             EcCCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEcC---CCeEEEEeecCCc
Q 017520           86 MDKNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVSE---DGVENFLSYVNGS  158 (370)
Q Consensus        86 ~d~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~~---~g~~~~~~~~~g~  158 (370)
                      .|+.+.+|+.. .++.|..+|  ++++......+..|+ ++++++||+ +|+++....|..+|.   ++ +.+.....| 
T Consensus       163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~~G-  239 (567)
T 1qks_A          163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIKIG-  239 (567)
T ss_dssp             CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEECC-
T ss_pred             cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEecC-
Confidence            44556788887 678999999  666655455666899 999999996 899886667899984   44 222222223 


Q ss_pred             ccccccceEEc----CCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cC-----------CCCc
Q 017520          159 KLRFANDVVEA----SDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-----------FYFA  221 (370)
Q Consensus       159 ~~~~~~~l~~d----~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~-----------~~~p  221 (370)
                        ..+..++++    +|| .+|+++.                 ..+.+..+|..+.+..... ..           ....
T Consensus       240 --~~P~~ia~s~~~~pDGk~l~v~n~-----------------~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          240 --SEARSIETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             --CCCceeEEccccCCCCCEEEEEEc-----------------cCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence              357899999    598 5888864                 3467889998776554322 11           0123


Q ss_pred             cceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE-EEEEecCchhHHHhhhcchhHH
Q 017520          222 NGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIK  298 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~  298 (370)
                      .++..++++..++++....  |+.+|....+.-....+  ....++.++.+|++|++ |++....               
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~s---------------  363 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANAR---------------  363 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGG---------------
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCC---------------
Confidence            4677888887777776543  88888754321111111  12335778899999975 5555443               


Q ss_pred             HHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccccee--EEEE-CCEEEEEe-CCCCeEEEEeCC
Q 017520          299 HVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTS--GLQV-DNHLYVIS-LTSNFIGKVQLS  370 (370)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~--~~~~-~g~L~~gs-~~~~~i~~~~~~  370 (370)
                                         ..|..+|. .++++..... .|..-+....  +... .+.+|+.+ +..+.|.+++.+
T Consensus       364 -------------------n~V~ViD~~t~kl~~~i~v-gg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~  420 (567)
T 1qks_A          364 -------------------NKLVVIDTKEGKLVAIEDT-GGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD  420 (567)
T ss_dssp             -------------------TEEEEEETTTTEEEEEEEC-SSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred             -------------------CeEEEEECCCCcEEEEEec-cCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCC
Confidence                               34777885 5677666643 0221222122  2223 37888865 455788888754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=7.5e-08  Score=91.29  Aligned_cols=241  Identities=12%  Similarity=0.059  Sum_probs=138.6

Q ss_pred             ceEecCCCcCCCcceEEcCCC-cEEEEec----------CCeEEEEe--CCeEEE-EEec-------CCCceeceEEcCC
Q 017520           70 FIKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWVN-WKFI-------DSQTLVGLTSTKE  128 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G-~l~v~~~----------~g~I~~~~--~g~~~~-~~~~-------~~~p~~gl~~d~~  128 (370)
                      ...++.|.  .| +|++++|| .+|+++.          ++.|..+|  +++... +.-.       ...|. ++++++|
T Consensus       112 v~~I~vG~--~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spD  187 (426)
T 3c75_H          112 LGMTDGGF--LP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPD  187 (426)
T ss_dssp             EEEEEECS--SC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTT
T ss_pred             EEEEECCC--CC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            34455553  68 99999988 6999872          56799999  565443 3222       35689 9999999


Q ss_pred             C-cEEEEeCC--CceEEEc-CCC--eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceE
Q 017520          129 G-HLIICDNA--NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       129 G-~L~v~~~~--~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                      | .|||++..  +.|..+| .++  +..+ .. .+.       ..+.++| +.|++..                 .+|.+
T Consensus       188 Gk~lyV~n~~~~~~VsVID~~t~kvv~~I-~v-~g~-------~~~~p~g~~~~v~~~-----------------~dG~~  241 (426)
T 3c75_H          188 NKNLLFYQFSPAPAVGVVDLEGKTFDRML-DV-PDC-------YHIFPASPTVFYMNC-----------------RDGSL  241 (426)
T ss_dssp             SSEEEEEECSSSCEEEEEETTTTEEEEEE-EC-CSE-------EEEEEEETTEEEEEE-----------------TTSSE
T ss_pred             CCEEEEEecCCCCeEEEEECCCCeEEEEE-Ec-CCc-------eeeccCCCcEEEEEc-----------------CCCCE
Confidence            9 49998753  4688898 566  3322 11 111       1222222 4444432                 23455


Q ss_pred             EEEeCCCCeEEEE----ecCCCCc--cceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeec---------cCCCCCC
Q 017520          202 LKYDPSSNITTLV----ADGFYFA--NGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFA---------ENLPGAP  265 (370)
Q Consensus       202 ~~~d~~t~~~~~~----~~~~~~p--~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~---------~~~~g~p  265 (370)
                      ..++..++++...    ..-...|  ..+.++++++.+|+....+ ++++|..+........+.         ...+...
T Consensus       242 ~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~  321 (426)
T 3c75_H          242 ARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGW  321 (426)
T ss_dssp             EEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSS
T ss_pred             EEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCc
Confidence            5555544433311    1111122  3356788988888887766 999998654211001110         0011222


Q ss_pred             CceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCcccc
Q 017520          266 DNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSF  343 (370)
Q Consensus       266 ~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~  343 (370)
                      ..++++++| ++||+...+...                    .     -....+.|..+|. .++++..+....     .
T Consensus       322 ~~va~s~dg~rlyVa~~~~~~g--------------------t-----hk~~s~~VsVID~~T~kvv~~I~vg~-----~  371 (426)
T 3c75_H          322 QQTAYHRQSDRIYLLVDQRDEW--------------------K-----HKAASRFVVVLNAETGERINKIELGH-----E  371 (426)
T ss_dssp             SCEEEEGGGTEEEEEEEECCTT--------------------C-----TTSCEEEEEEEETTTCCEEEEEEEEE-----E
T ss_pred             eeeEEcCCCCEEEEEecccccc--------------------c-----ccCCCCEEEEEECCCCeEEEEEECCC-----C
Confidence            348899887 599987532000                    0     0011246889995 588888886432     1


Q ss_pred             ceeEE-EEC-C-EEEEEeCCCCeEEEEeCC
Q 017520          344 VTSGL-QVD-N-HLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       344 ~t~~~-~~~-g-~L~~gs~~~~~i~~~~~~  370 (370)
                      ...+. ..+ . .||+....++.|.++++.
T Consensus       372 P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          372 IDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             ECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             cCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            23333 334 4 688888889999999863

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.97  E-value=4.4e-07  Score=89.49  Aligned_cols=238  Identities=14%  Similarity=0.114  Sum_probs=142.7

Q ss_pred             CCCcceEEcCCC-cEEEEecCCeEEEEe-C---CeEEEEEecCCCceeceEEc----CCCc-EEEEeCC-CceEEEc-CC
Q 017520           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ-D---GTWVNWKFIDSQTLVGLTST----KEGH-LIICDNA-NGLHKVS-ED  146 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~~~g~I~~~~-~---g~~~~~~~~~~~p~~gl~~d----~~G~-L~v~~~~-~gi~~~~-~~  146 (370)
                      ..|+++++++|| .+|+++.+|.|..+| .   ++...-...+..|. +++++    +||+ +|+++.. ..+..+| .+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            378999999988 589999889999999 3   23333334456789 99999    5895 8988766 5577777 45


Q ss_pred             C--eEEEEe-ec--CC---cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--ec
Q 017520          147 G--VENFLS-YV--NG---SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--AD  216 (370)
Q Consensus       147 g--~~~~~~-~~--~g---~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~  216 (370)
                      .  ++.+.. ..  .+   .+...+..+..++++..|+...                ...|.|+.+|..+......  ..
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------------~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------------KETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEEETTCSSEEEEEEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------------cCCCeEEEEecCCCccceeeeee
Confidence            4  333321 11  11   0111344677777765444422                1468899999765422111  22


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCC-Ccee-ECCC-CCEEEEEecCchhHHHhh
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAP-DNIN-LAPD-GTFWIAIIKLDARRMKIL  291 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p-~~i~-~d~~-G~lwv~~~~~~~~~~~~~  291 (370)
                      ...++.++.+++||+++|++....  |.++|.+..+....-......| .| .+.. ++++ |.+|++...+        
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~P-hpg~g~~~~~p~~g~v~~t~~~g--------  410 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTP-HPGRGANFVHPTFGPVWATSHMG--------  410 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSB-CCTTCEEEEETTTEEEEEEEBSS--------
T ss_pred             ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCC-CCccceeeECCCCCcEEEeCCCC--------
Confidence            345788899999999999998655  9999987543211111101111 12 3544 4665 6799876533        


Q ss_pred             hcchhHHHHHHhCCccccccccCCCceEEEEECCC--------CcEEEEEeCCCCCccccceeEEEECCEEEEEeC-C--
Q 017520          292 NSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED--------GTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISL-T--  360 (370)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~--------g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~-~--  360 (370)
                                               .+.|..+|.+        -++++.+....+.  ...-.....+.+||+.+. +  
T Consensus       411 -------------------------~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g--~~~i~~~p~~~~l~v~~~~~~~  463 (567)
T 1qks_A          411 -------------------------DDSVALIGTDPEGHPDNAWKILDSFPALGGG--SLFIKTHPNSQYLYVDATLNPE  463 (567)
T ss_dssp             -------------------------SSEEEEEECCTTTCTTTBTSEEEEEECSCSC--CCCEECCTTCSEEEEECTTCSS
T ss_pred             -------------------------CCeEEEecCCCCCCccccCEEEEEEecCCCC--CEEEEeCCCCCeEEEecCCCCC
Confidence                                     1246666643        3677777654211  011111123468999884 3  


Q ss_pred             ---CCeEEEEeC
Q 017520          361 ---SNFIGKVQL  369 (370)
Q Consensus       361 ---~~~i~~~~~  369 (370)
                         ++.|++|++
T Consensus       464 ~~~~~~v~v~d~  475 (567)
T 1qks_A          464 AEISGSVAVFDI  475 (567)
T ss_dssp             HHHHTCEEEEEG
T ss_pred             cccCceEEEEEC
Confidence               358998875

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.96  E-value=1.1e-06  Score=86.31  Aligned_cols=176  Identities=15%  Similarity=0.193  Sum_probs=114.7

Q ss_pred             CCcceEEcCCCcEE-EEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcCCCcEEEEeCCCce-EEEcCCC--eEEEEe
Q 017520           80 HPEDASMDKNGVIY-TATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGL-HKVSEDG--VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l~-v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi-~~~~~~g--~~~~~~  153 (370)
                      ...++++.++|... .+..+|.|..++ ++ ....+........ +++++++|+..+.....|. ..++.++  +..+..
T Consensus       305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~  383 (577)
T 2ymu_A          305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  383 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTCCEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE-EEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecC
Confidence            45678888888654 556888899999 44 4555544455567 8999999986665444454 4445656  333321


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l  233 (370)
                      .     ...+..++++++|+..++.+                 .++.|..||........+...-.....+++++|++.+
T Consensus       384 ~-----~~~v~~~~~s~dg~~l~~~~-----------------~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l  441 (577)
T 2ymu_A          384 H-----SSSVRGVAFSPDGQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTI  441 (577)
T ss_dssp             C-----SSCEEEEEECTTSSCEEEEE-----------------TTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             C-----CCCeEEEEECCCCCEEEEEe-----------------CCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEE
Confidence            1     13577899999998665533                 3467888887655555544444456789999999988


Q ss_pred             EEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          234 VVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..+...+ |..|+.++.   ....+. ........++++++|++.++...
T Consensus       442 ~~~~~d~~v~~w~~~~~---~~~~~~-~~~~~v~~~~~spd~~~las~~~  487 (577)
T 2ymu_A          442 ASASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASD  487 (577)
T ss_dssp             EEEETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSCEEEEEET
T ss_pred             EEEcCCCEEEEEECCCC---EEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence            7777777 888886543   222222 22333566889999987766544

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.96  E-value=1.7e-07  Score=81.47  Aligned_cols=191  Identities=15%  Similarity=0.140  Sum_probs=123.0

Q ss_pred             ceeceEEcCCCcEEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520          119 TLVGLTSTKEGHLIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      .. |+.++. +.||++....   .|.++| ++| +..-.. .+..  .+..+++++ +++||+.+.              
T Consensus        23 tq-GL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~-l~~~--~fgeGi~~~-~~~ly~ltw--------------   82 (243)
T 3mbr_X           23 TE-GLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE-VPPP--YFGAGIVAW-RDRLIQLTW--------------   82 (243)
T ss_dssp             EE-EEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE-CCTT--CCEEEEEEE-TTEEEEEES--------------
T ss_pred             cc-cEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe-CCCC--cceeEEEEe-CCEEEEEEe--------------
Confidence            45 999985 8999997653   588999 677 332222 1221  244566665 468999975              


Q ss_pred             ccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCC-CCCCceeE
Q 017520          194 EGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLP-GAPDNINL  270 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~-g~p~~i~~  270 (370)
                         .++.+++||+++.+...-...  ...|..++.|++.||+++..+ |+.+|+++.+....-.... ..+ ..++.+..
T Consensus        83 ---~~~~v~v~D~~tl~~~~ti~~--~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~  157 (243)
T 3mbr_X           83 ---RNHEGFVYDLATLTPRARFRY--PGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW  157 (243)
T ss_dssp             ---SSSEEEEEETTTTEEEEEEEC--SSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred             ---eCCEEEEEECCcCcEEEEEeC--CCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence               457899999988766443322  235677778888899998655 9999976543211111111 111 12333444


Q ss_pred             CCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCC---------Cc
Q 017520          271 APDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG---------QL  340 (370)
Q Consensus       271 d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g---------~~  340 (370)
                      . +|.+|+..+..                                  ..|.++|+ .|+++..+....-         ..
T Consensus       158 ~-~G~lyanvw~s----------------------------------~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          158 V-NGELLANVWLT----------------------------------SRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             E-TTEEEEEETTT----------------------------------TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             e-CCEEEEEECCC----------------------------------CeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            4 78999998764                                  35899997 6899998753210         01


Q ss_pred             cccceeEEEE--CCEEEEEeCCCCeEEEEeC
Q 017520          341 MSFVTSGLQV--DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       341 ~~~~t~~~~~--~g~L~~gs~~~~~i~~~~~  369 (370)
                      .+....++.+  .++||+.+..=+.+-.+++
T Consensus       203 ~~vlNGIA~d~~~~~lfVTGK~wp~~~~v~~  233 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTGKRWPMLYEIRL  233 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEECCCCCcEEEEEE
Confidence            1233455554  4899999999999888775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.96  E-value=3.4e-06  Score=76.81  Aligned_cols=179  Identities=13%  Similarity=0.137  Sum_probs=115.8

Q ss_pred             CCCcceEEcCCCcEE-EEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC-eEEE
Q 017520           79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g-~~~~  151 (370)
                      ..-.++++.+++.+. .++.++.|..|+  +++. ..+........ .++++++|+.+++.... .+..++ +++ ....
T Consensus        81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~  159 (321)
T 3ow8_A           81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYS  159 (321)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCC-CEEECTTSSEEEEECTTSEEEEEETTTCSEEEE
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEE-EEEECCCCCEEEEEcCCCcEEEEEcCCCceeEE
Confidence            345667787777554 556899999999  5653 33433444566 89999999876665444 455566 555 2221


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg  230 (370)
                      ... .   ...+..++++++|+..++.+                 .++.|..||..+++......+. .....+++++|+
T Consensus       160 ~~~-~---~~~v~~~~~spdg~~lasg~-----------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~  218 (321)
T 3ow8_A          160 LDT-R---GKFILSIAYSPDGKYLASGA-----------------IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS  218 (321)
T ss_dssp             EEC-S---SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTS
T ss_pred             ecC-C---CceEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCC
Confidence            111 1   13577899999998766643                 3578999999887765444433 345789999999


Q ss_pred             CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      +.++.+...+ |..||+....  ....+. ...+....+++.++|.+.++...
T Consensus       219 ~~l~s~s~dg~i~iwd~~~~~--~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~  268 (321)
T 3ow8_A          219 QLLVTASDDGYIKIYDVQHAN--LAGTLS-GHASWVLNVAFCPDDTHFVSSSS  268 (321)
T ss_dssp             CEEEEECTTSCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCcc--eeEEEc-CCCCceEEEEECCCCCEEEEEeC
Confidence            9777777666 9999876532  122222 23333556889999986666543

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.94  E-value=8.7e-08  Score=86.80  Aligned_cols=159  Identities=10%  Similarity=0.045  Sum_probs=100.9

Q ss_pred             cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCC-C-eEEEE-eecC--CcccccccceEE---cCCCcEEE-EeCCCCC
Q 017520          115 IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSED-G-VENFL-SYVN--GSKLRFANDVVE---ASDGSLYF-TVSSSKY  183 (370)
Q Consensus       115 ~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~-g-~~~~~-~~~~--g~~~~~~~~l~~---d~~G~l~v-~d~~~~~  183 (370)
                      ....|- ++++|+ +|.+|+++.. +.|.+++++ + ...+. ....  +.+...+.+|.+   |++|+||+ .+.+..+
T Consensus        11 ~~~yPE-~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           11 KNLTPE-DTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             TTCCCS-CEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             cccCCc-CccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            344577 999975 6789999965 679999965 4 44331 1111  333446789999   79999999 4432222


Q ss_pred             CCccceecccccCCCceEEEEeCC---CCeEEEEec--------------CCCCccceEEccCCCEEEEEeCC--c-EEE
Q 017520          184 LPHEYCLDILEGKPHGQLLKYDPS---SNITTLVAD--------------GFYFANGVALSRDEDYVVVCESW--K-CRK  243 (370)
Q Consensus       184 ~~~~~~~~~~~~~~~g~l~~~d~~---t~~~~~~~~--------------~~~~p~gi~~~~dg~~l~v~~~~--~-l~~  243 (370)
                      ....     ....+...|++||++   +++......              ....+|.+++|++|+ .||+++.  . |+|
T Consensus        90 ~~~g-----~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~r  163 (334)
T 2p9w_A           90 NFAD-----QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIAR  163 (334)
T ss_dssp             CTTS-----CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEE
T ss_pred             cccc-----cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEE
Confidence            1110     011235689999988   565433321              223589999999999 8997654  4 999


Q ss_pred             EEeCCCCCCceeeec-cC----CCCCCCceeECCCCCEEEEEecC
Q 017520          244 YWLKGERKGKLETFA-EN----LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       244 ~~~~~~~~~~~~~~~-~~----~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++.+|...   ..+. ..    ....++||+++++|++.+.....
T Consensus       164 V~pdG~~~---~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~  205 (334)
T 2p9w_A          164 VSADGKTV---STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGP  205 (334)
T ss_dssp             ECTTSCCE---EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSS
T ss_pred             EeCCCCEE---eeeeecCCCcccccCcceEEEeCCCCEEEEEcCC
Confidence            99887522   2221 11    01137899999999877776443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.94  E-value=2.1e-07  Score=86.58  Aligned_cols=213  Identities=13%  Similarity=0.124  Sum_probs=125.2

Q ss_pred             CCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCC-ccccc
Q 017520           88 KNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNG-SKLRF  162 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g-~~~~~  162 (370)
                      .+|.+|+++.+|.|+.++  +|+...-............++ +|.+|++...++++.++ .+| .......... .....
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~  180 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRG  180 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecC
Confidence            478999999999999999  687654333333333133443 78999988777799999 678 4332221110 00011


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc-------------cceEEccC
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA-------------NGVALSRD  229 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p-------------~gi~~~~d  229 (370)
                      ....+++ +|.+|++..                  .+.|+.+|+++++....... ..+             ....+  .
T Consensus       181 ~~~~~~~-~~~v~~g~~------------------~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~--~  238 (376)
T 3q7m_A          181 ESAPTTA-FGAAVVGGD------------------NGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV--V  238 (376)
T ss_dssp             CCCCEEE-TTEEEECCT------------------TTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE--E
T ss_pred             CCCcEEE-CCEEEEEcC------------------CCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE--E
Confidence            1223443 678988743                  37899999987766432211 111             11122  2


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccc
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  308 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (370)
                      ++.+|++...+ |+.++.++.+   . .+..... ....+..+ ++++|+++..+                         
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~---~-~w~~~~~-~~~~~~~~-~~~l~~~~~~g-------------------------  287 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQ---I-MWKRELG-SVNDFIVD-GNRIYLVDQND-------------------------  287 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCC---E-EEEECCC-CEEEEEEE-TTEEEEEETTC-------------------------
T ss_pred             CCEEEEEecCcEEEEEECCCCc---E-EeeccCC-CCCCceEE-CCEEEEEcCCC-------------------------
Confidence            34588887666 9999975432   1 1111111 12334444 67899998654                         


Q ss_pred             cccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEe
Q 017520          309 SQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       309 ~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~  368 (370)
                                .++.+|. +|+.++.+....+.   ..+.....+++||+++..+ .|..++
T Consensus       288 ----------~l~~~d~~tG~~~w~~~~~~~~---~~~~~~~~~~~l~v~~~~g-~l~~~d  334 (376)
T 3q7m_A          288 ----------RVMALTIDGGVTLWTQSDLLHR---LLTSPVLYNGNLVVGDSEG-YLHWIN  334 (376)
T ss_dssp             ----------CEEEEETTTCCEEEEECTTTTS---CCCCCEEETTEEEEECTTS-EEEEEE
T ss_pred             ----------eEEEEECCCCcEEEeecccCCC---cccCCEEECCEEEEEeCCC-eEEEEE
Confidence                      4899995 68888877633322   2334445688999998754 444444

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.93  E-value=2e-08  Score=96.35  Aligned_cols=169  Identities=9%  Similarity=0.059  Sum_probs=105.5

Q ss_pred             eEEEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC-eEEEEeecCC----cccccccceEEcC----CCcEEE
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENFLSYVNG----SKLRFANDVVEAS----DGSLYF  176 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g-~~~~~~~~~g----~~~~~~~~l~~d~----~G~l~v  176 (370)
                      +++.+......|. +|+++++|+|||++... .|++++ .+| .+.+......    .....+.+|+++|    +|.||+
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv   96 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEE
Confidence            4556666667899 99999999999999775 499998 457 5544332111    0124566899998    689999


Q ss_pred             EeCCCCCCCccceecccccCCCceEEEEeCCC--Ce---EEEEec-----CCCCccceEEccCCCEEEEEeC--------
Q 017520          177 TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS--NI---TTLVAD-----GFYFANGVALSRDEDYVVVCES--------  238 (370)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t--~~---~~~~~~-----~~~~p~gi~~~~dg~~l~v~~~--------  238 (370)
                      +.+...-....     .......+|+|++.+.  ..   .+++..     ...++++|++++||+ ||++.-        
T Consensus        97 ~~s~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~Gd~~~~~~~  170 (454)
T 1cru_A           97 SGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (454)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEeccccCCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEECCCCCCCcc
Confidence            97520000000     0000134788887532  11   233332     245688999999998 999732        


Q ss_pred             -------------------------Cc-EEEEEeCCCC-CC-------ceeeeccCCCCCCCceeECCCCCEEEEEecCc
Q 017520          239 -------------------------WK-CRKYWLKGER-KG-------KLETFAENLPGAPDNINLAPDGTFWIAIIKLD  284 (370)
Q Consensus       239 -------------------------~~-l~~~~~~~~~-~~-------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  284 (370)
                                               .+ |+|++.++.. .+       ..+.+...+ ..|.++++|++|+||++.++.+
T Consensus       171 ~~~~~~~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~  249 (454)
T 1cru_A          171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPN  249 (454)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCC
Confidence                                     13 9999987641 01       123343222 2478899999999999998643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.93  E-value=1e-06  Score=82.21  Aligned_cols=241  Identities=14%  Similarity=0.116  Sum_probs=130.6

Q ss_pred             eEecCCCcCCCcceEEcCCC-cEEEEec----------CCeEEEEe--CCeEE-EEEec-------CCCceeceEEcCCC
Q 017520           71 IKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWV-NWKFI-------DSQTLVGLTSTKEG  129 (370)
Q Consensus        71 ~~~~~~~~~~P~~i~~d~~G-~l~v~~~----------~g~I~~~~--~g~~~-~~~~~-------~~~p~~gl~~d~~G  129 (370)
                      ..++.|.  .|. +++++|| .+|+++.          ++.|..||  +++.. .+.-.       ...|. ++++++||
T Consensus        73 ~~I~vG~--~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~-~~a~spDG  148 (386)
T 3sjl_D           73 GMIDGGF--LPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTPDG  148 (386)
T ss_dssp             EEEEECS--SCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GEEECTTS
T ss_pred             EEEECCC--CCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCc-eEEEcCCC
Confidence            4455553  686 9999988 5999872          45699999  56543 33222       23689 99999999


Q ss_pred             c-EEEEeCC--CceEEEc-CCC--eEEEEeecCCcccccccc----eEEcCCCcEEEEeCCCCCCCccceecccccCCCc
Q 017520          130 H-LIICDNA--NGLHKVS-EDG--VENFLSYVNGSKLRFAND----VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG  199 (370)
Q Consensus       130 ~-L~v~~~~--~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~----l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g  199 (370)
                      + |||++..  +.|..+| .++  +..+ . .++...-.+.+    +++.+||++.+.+..                ..+
T Consensus       149 k~lyVan~~~~~~VsVID~~t~~vv~tI-~-v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~----------------~~g  210 (386)
T 3sjl_D          149 KTLLFYQFSPAPAVGVVDLEGKAFKRML-D-VPDCYHIFPTAPDTFFMHCRDGSLAKVAFG----------------TEG  210 (386)
T ss_dssp             SEEEEEECSSSCEEEEEETTTTEEEEEE-E-CCSEEEEEEEETTEEEEEETTSCEEEEECC----------------SSS
T ss_pred             CEEEEEEcCCCCeEEEEECCCCcEEEEE-E-CCCcceeecCCCceeEEECCCCCEEEEECC----------------CCC
Confidence            5 8999753  5688888 666  3333 2 12211111211    244455543333321                112


Q ss_pred             eEEEEeCCCCeEEEEecC--CCCccceEEc-cCCCEEEEEeCCcEEEEEeCCCCCCceee---ecc------CCCCCCCc
Q 017520          200 QLLKYDPSSNITTLVADG--FYFANGVALS-RDEDYVVVCESWKCRKYWLKGERKGKLET---FAE------NLPGAPDN  267 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~~~--~~~p~gi~~~-~dg~~l~v~~~~~l~~~~~~~~~~~~~~~---~~~------~~~g~p~~  267 (370)
                      .+.  +..+    .....  ....+..+++ ++|+.+|++..+.|+.+|..+........   +..      ..|+....
T Consensus       211 ~v~--~~~~----~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~  284 (386)
T 3sjl_D          211 TPE--ITHT----EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ  284 (386)
T ss_dssp             CCE--EEEC----CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSC
T ss_pred             eEE--Eeec----ceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcce
Confidence            221  0000    01110  1111223554 68876676664449999987653211111   110      01222234


Q ss_pred             eeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccc-
Q 017520          268 INLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFV-  344 (370)
Q Consensus       268 i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~-  344 (370)
                      +++++++ ++|++...+..    .-                     -..+...|..+|. .++++..+....     .+ 
T Consensus       285 ~a~~~~~~~lyV~~~~~~~----~~---------------------hk~~~~~V~viD~~t~kv~~~i~vg~-----~~~  334 (386)
T 3sjl_D          285 VAYHRALDRIYLLVDQRDE----WR---------------------HKTASRFVVVLDAKTGERLAKFEMGH-----EID  334 (386)
T ss_dssp             EEEETTTTEEEEEEEECCT----TC---------------------TTSCEEEEEEEETTTCCEEEEEEEEE-----EEC
T ss_pred             eeECCCCCeEEEEeccccc----cc---------------------cCCCCCEEEEEECCCCeEEEEEECCC-----Ccc
Confidence            7888776 69999764210    00                     0112356889995 688888876532     23 


Q ss_pred             eeEEEECC--EEEEEeCCCCeEEEEeC
Q 017520          345 TSGLQVDN--HLYVISLTSNFIGKVQL  369 (370)
Q Consensus       345 t~~~~~~g--~L~~gs~~~~~i~~~~~  369 (370)
                      +.....++  .||.++..++.|.+++.
T Consensus       335 ~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          335 SINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             eEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            33333443  58888888899998875

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.93  E-value=6.7e-07  Score=83.17  Aligned_cols=210  Identities=17%  Similarity=0.179  Sum_probs=125.3

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCCc------eeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeec--C
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQT------LVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV--N  156 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p------~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~--~  156 (370)
                      +|.+|+++.+|.|+.++  +|+...........      . ...++ +|.+|++....+++.++ .+| ........  .
T Consensus       143 ~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~  220 (376)
T 3q7m_A          143 DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES-APTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT  220 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCC-CCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC--
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCC-CcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCC
Confidence            67999999999999999  78755433322111      2 34444 68899987667799999 678 43322211  0


Q ss_pred             Cc----ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCE
Q 017520          157 GS----KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       157 g~----~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~  232 (370)
                      +.    .+.......+..+|.+|++..                  .+.|+.+|+++++...... .....++.++  ++.
T Consensus       221 ~~~~~~~~~~~~~~p~~~~~~v~~~~~------------------~g~l~~~d~~tG~~~w~~~-~~~~~~~~~~--~~~  279 (376)
T 3q7m_A          221 GSTEIDRLSDVDTTPVVVNGVVFALAY------------------NGNLTALDLRSGQIMWKRE-LGSVNDFIVD--GNR  279 (376)
T ss_dssp             ---------CCCCCCEEETTEEEEECT------------------TSCEEEEETTTCCEEEEEC-CCCEEEEEEE--TTE
T ss_pred             CCcccccccccCCCcEEECCEEEEEec------------------CcEEEEEECCCCcEEeecc-CCCCCCceEE--CCE
Confidence            10    000011111123688999853                  3689999998887643322 2233444443  456


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccCCC-CCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccc
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  310 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (370)
                      +|++...+ |+.+|.++.+.  .-.. .... .......+ .+|++|+++..+                           
T Consensus       280 l~~~~~~g~l~~~d~~tG~~--~w~~-~~~~~~~~~~~~~-~~~~l~v~~~~g---------------------------  328 (376)
T 3q7m_A          280 IYLVDQNDRVMALTIDGGVT--LWTQ-SDLLHRLLTSPVL-YNGNLVVGDSEG---------------------------  328 (376)
T ss_dssp             EEEEETTCCEEEEETTTCCE--EEEE-CTTTTSCCCCCEE-ETTEEEEECTTS---------------------------
T ss_pred             EEEEcCCCeEEEEECCCCcE--EEee-cccCCCcccCCEE-ECCEEEEEeCCC---------------------------
Confidence            99988776 99999765421  1111 1111 11222333 357899997654                           


Q ss_pred             cccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCe
Q 017520          311 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNF  363 (370)
Q Consensus       311 ~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~  363 (370)
                              .++.+| .+|+++..+....+.   ..+.....+++||+++.++..
T Consensus       329 --------~l~~~d~~tG~~~~~~~~~~~~---~~~~~~~~~~~l~v~~~~G~l  371 (376)
T 3q7m_A          329 --------YLHWINVEDGRFVAQQKVDSSG---FQTEPVAADGKLLIQAKDGTV  371 (376)
T ss_dssp             --------EEEEEETTTCCEEEEEECCTTC---BCSCCEEETTEEEEEBTTSCE
T ss_pred             --------eEEEEECCCCcEEEEEecCCCc---ceeCCEEECCEEEEEeCCCEE
Confidence                    589999 479998888764332   233445568999999988763

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.92  E-value=2.1e-06  Score=78.83  Aligned_cols=230  Identities=9%  Similarity=-0.046  Sum_probs=137.7

Q ss_pred             CCcceEEcCCCcEE-EEecCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-eEE
Q 017520           80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VEN  150 (370)
Q Consensus        80 ~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-~~~  150 (370)
                      ...+++++++|.+. +++.+|.|..|+  +++   ...+........ +++++++|+++++... +.|..++ .++ ...
T Consensus        10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            46778999888655 555899999999  564   334444455567 8999999986655434 4466666 555 322


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe----EEEEecC-CCCccceE
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVADG-FYFANGVA  225 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~----~~~~~~~-~~~p~gi~  225 (370)
                      .... .+ ....+..++++++|+..++..                 .++.|..||.+++.    ....... ......++
T Consensus        89 ~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~  149 (372)
T 1k8k_C           89 TLVI-LR-INRAARCVRWAPNEKKFAVGS-----------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLD  149 (372)
T ss_dssp             EEEC-CC-CSSCEEEEEECTTSSEEEEEE-----------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEE
T ss_pred             eEEe-ec-CCCceeEEEECCCCCEEEEEe-----------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEEE
Confidence            2111 11 123578899999997665533                 23566666655443    2222222 34567899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCC---------------CCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHH
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGER---------------KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMK  289 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~---------------~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~  289 (370)
                      ++++++.++.+...+ |..|++....               .+..........+....++++++|++.++....      
T Consensus       150 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------  223 (372)
T 1k8k_C          150 WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD------  223 (372)
T ss_dssp             ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT------
T ss_pred             EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC------
Confidence            999999888777777 8889864210               111111111223345568889999755554332      


Q ss_pred             hhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEE
Q 017520          290 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKV  367 (370)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~  367 (370)
                                                  +.+..+|. .++.+..+....+    .+..+.. .++++..++ ....|..+
T Consensus       224 ----------------------------~~i~i~d~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~-~d~~i~i~  270 (372)
T 1k8k_C          224 ----------------------------STVCLADADKKMAVATLASETL----PLLAVTFITESSLVAAG-HDCFPVLF  270 (372)
T ss_dssp             ----------------------------TEEEEEEGGGTTEEEEEECSSC----CEEEEEEEETTEEEEEE-TTSSCEEE
T ss_pred             ----------------------------CEEEEEECCCCceeEEEccCCC----CeEEEEEecCCCEEEEE-eCCeEEEE
Confidence                                        34677774 6788888765443    3444444 367766666 55555555


Q ss_pred             e
Q 017520          368 Q  368 (370)
Q Consensus       368 ~  368 (370)
                      +
T Consensus       271 ~  271 (372)
T 1k8k_C          271 T  271 (372)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.91  E-value=7.5e-07  Score=78.36  Aligned_cols=194  Identities=11%  Similarity=0.124  Sum_probs=122.0

Q ss_pred             CCceeceEEcCCC-cEEEE-eCCCceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecc
Q 017520          117 SQTLVGLTSTKEG-HLIIC-DNANGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDI  192 (370)
Q Consensus       117 ~~p~~gl~~d~~G-~L~v~-~~~~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~  192 (370)
                      ..+. ||++++++ .||+. +....|++++.+|  .+.+ . ..+  +..+.+|+++++|.+|+++..            
T Consensus        27 ~~lS-Gla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i-~-l~g--~~D~EGIa~~~~g~~~vs~E~------------   89 (255)
T 3qqz_A           27 NNIS-SLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTI-P-LDF--VKDLETIEYIGDNQFVISDER------------   89 (255)
T ss_dssp             SCEE-EEEEETTTTEEEEEEETTEEEEEEETTCCEEEEE-E-CSS--CSSEEEEEECSTTEEEEEETT------------
T ss_pred             cCcc-eeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEE-e-cCC--CCChHHeEEeCCCEEEEEECC------------
Confidence            4567 99999865 69985 4445799999667  3333 1 122  346788999999999999752            


Q ss_pred             cccCCCceEEEEeCCCCe-E---EEEecCC-CCc-----cceEEccCCCEEEEEeCCc---EEEEEeCCC-CCCceeeec
Q 017520          193 LEGKPHGQLLKYDPSSNI-T---TLVADGF-YFA-----NGVALSRDEDYVVVCESWK---CRKYWLKGE-RKGKLETFA  258 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~-~---~~~~~~~-~~p-----~gi~~~~dg~~l~v~~~~~---l~~~~~~~~-~~~~~~~~~  258 (370)
                           .++++.++..... .   ....-.+ ..+     .|++++++++.+|++....   |+.|+  +. .........
T Consensus        90 -----~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~--g~~~~~~l~i~~  162 (255)
T 3qqz_A           90 -----DYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN--GLLSSNELHISK  162 (255)
T ss_dssp             -----TTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE--STTCSSCCEEEE
T ss_pred             -----CCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc--ccccCCceeeec
Confidence                 3567766543222 1   1111111 123     7999999998899987654   66666  31 111122110


Q ss_pred             c-----C-CCCCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEE
Q 017520          259 E-----N-LPGAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIR  331 (370)
Q Consensus       259 ~-----~-~~g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~  331 (370)
                      +     . .-.-+.++++|+ .|++|+-....                                  .+++++|.+|+++.
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s----------------------------------~~L~~~d~~g~~~~  208 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVLSHES----------------------------------RALQEVTLVGEVIG  208 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEEETTT----------------------------------TEEEEECTTCCEEE
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEEECCC----------------------------------CeEEEEcCCCCEEE
Confidence            0     0 112367899987 55788887665                                  46999999999888


Q ss_pred             EEeCCCCC-----ccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          332 NLVDPTGQ-----LMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       332 ~~~~~~g~-----~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                      .+.-..|.     .+.-.-.++.+ +|+|||.+ ..|.+.|+.-
T Consensus       209 ~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E~n~~y~f~~  251 (255)
T 3qqz_A          209 EMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-EPNRFYRFTP  251 (255)
T ss_dssp             EEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-TTTEEEEEEC
T ss_pred             EEEcCCccCCcccccCCCCeeEECCCCCEEEEc-CCceEEEEEe
Confidence            77665442     12233455555 58999996 4578888763

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.90  E-value=2.4e-06  Score=83.72  Aligned_cols=217  Identities=14%  Similarity=0.152  Sum_probs=140.6

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe-CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEcCCC--eEEEEe
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~~~g--~~~~~~  153 (370)
                      ...++++.++|.. .++..+|.|..++ +++ ...+......+. +++++++|+.++.....+ |..++.++  ...+..
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~  424 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG  424 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEE-EEEECTTSSCEEEEETTSEEEEECTTCCEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecC
Confidence            4567888888864 4566888898888 665 344444455567 999999998655443444 55556555  443322


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYV  233 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l  233 (370)
                      .     ...+..+++.+|++..++.+                 .++.|..||..++....+.........+++++|++.+
T Consensus       425 ~-----~~~v~~~~~s~d~~~l~~~~-----------------~d~~v~~w~~~~~~~~~~~~~~~~v~~~~~spd~~~l  482 (577)
T 2ymu_A          425 H-----SSSVWGVAFSPDDQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTI  482 (577)
T ss_dssp             C-----SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSCEE
T ss_pred             C-----CCCeEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCEEEEEcCCCCCEEEEEEcCCCCEE
Confidence            1     13567899999998766643                 3467888897755555554444556789999999977


Q ss_pred             EEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccc
Q 017520          234 VVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  312 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (370)
                      ..+...+ |..|+.++.   ....+. ...+....++++++|++.++....                             
T Consensus       483 as~~~d~~i~iw~~~~~---~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d-----------------------------  529 (577)
T 2ymu_A          483 ASASDDKTVKLWNRNGQ---LLQTLT-GHSSSVRGVAFSPDGQTIASASDD-----------------------------  529 (577)
T ss_dssp             EEEETTSEEEEEETTSC---EEEEEE-CCSSCEEEEEECTTSSCEEEEETT-----------------------------
T ss_pred             EEEeCCCEEEEEcCCCC---EEEEEe-CCCCCEEEEEEcCCCCEEEEEECc-----------------------------
Confidence            7777767 888885542   222232 233335668899999866654332                             


Q ss_pred             cCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCE-EEEEeCCC
Q 017520          313 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTS  361 (370)
Q Consensus       313 ~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~~gs~~~  361 (370)
                           +.|..+|.+|+.+..+....+    .++.+... +|+ |.-++.++
T Consensus       530 -----g~v~lwd~~~~~~~~~~~h~~----~v~~~~fs~dg~~l~s~~~D~  571 (577)
T 2ymu_A          530 -----KTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDGQTIASASSDK  571 (577)
T ss_dssp             -----SEEEEECTTSCEEEEEECCSS----CEEEEEECTTSSCEEEEETTS
T ss_pred             -----CEEEEEeCCCCEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCC
Confidence                 457778888999888875443    45666654 344 54455443

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.88  E-value=1.9e-07  Score=86.87  Aligned_cols=74  Identities=12%  Similarity=0.174  Sum_probs=53.5

Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      +.|+.||.+++++........ |.++++++||+.+|+++. + |.+||..+.++.....+. .....|.+++++++|+
T Consensus       286 ~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          286 AEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred             ceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence            478889998887654443334 999999999999999987 6 999997654222222221 3345699999999985

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.87  E-value=5.3e-06  Score=74.83  Aligned_cols=178  Identities=12%  Similarity=0.078  Sum_probs=112.6

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCe----EEEEE--ecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC-
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT----WVNWK--FIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~----~~~~~--~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g-  147 (370)
                      ....++++.++|.+.++..+|.|..|+  +++    ...+.  ....... .++++++|++++ +...+.|..++ .++ 
T Consensus        52 ~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~  130 (337)
T 1gxr_A           52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCC
Confidence            356789999988766555599999999  332    23322  2334456 899999997544 44444566666 444 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~  226 (370)
                      ....... .+ ....+..+++.++|+..++..                 .++.|..||..+++....... ......+++
T Consensus       131 ~~~~~~~-~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~  191 (337)
T 1gxr_A          131 PRIKAEL-TS-SAPACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEEE-EC-SSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             cceeeec-cc-CCCceEEEEECCCCCEEEEEe-----------------CCCcEEEEeCCCCceeeeeecccCceEEEEE
Confidence            2222111 11 113567899999997655533                 347899999887765444432 345678999


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      +++++.++.+...+ |..|++...+.  ...+  ...+....++++++|++.+..
T Consensus       192 ~~~~~~l~~~~~dg~i~~~d~~~~~~--~~~~--~~~~~v~~~~~s~~~~~l~~~  242 (337)
T 1gxr_A          192 SNDGTKLWTGGLDNTVRSWDLREGRQ--LQQH--DFTSQIFSLGYCPTGEWLAVG  242 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEE--EEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCCEEEEEecCCcEEEEECCCCce--Eeee--cCCCceEEEEECCCCCEEEEE
Confidence            99999888888777 99999765421  1122  123345668888888755544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.86  E-value=8e-07  Score=84.17  Aligned_cols=202  Identities=16%  Similarity=0.118  Sum_probs=130.9

Q ss_pred             CCcceEEcCCCc-EEEEecC---CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC---CceEEEc-CCC-
Q 017520           80 HPEDASMDKNGV-IYTATRD---GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA---NGLHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~---g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~---~gi~~~~-~~g-  147 (370)
                      ...++++.++|. |++++.+   ..|+.++  +|+...+....+... ++++++||+ |+++...   ..|+.++ .++ 
T Consensus       180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~  258 (415)
T 2hqs_A          180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  258 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred             cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence            456678899986 4455544   4899999  677666655555667 899999997 5534332   2488888 556 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~  226 (370)
                      ...+... .    ..+..++++|||+ |+++...               .....|+.+|.++++.+.+.........+++
T Consensus       259 ~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~  318 (415)
T 2hqs_A          259 IRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADV  318 (415)
T ss_dssp             EEECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEE
T ss_pred             EEeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeEE
Confidence            5433221 1    2456789999997 6655421               1234799999988776654433344567899


Q ss_pred             ccCCCEEEEEeCC---c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE-EEEEecCchhHHHhhhcchhHHHHH
Q 017520          227 SRDEDYVVVCESW---K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       227 ~~dg~~l~v~~~~---~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      ++||+.++++...   . |+++++++.+   ...+...  .....++++++|+. +.+...+                  
T Consensus       319 spdG~~l~~~~~~~g~~~i~~~d~~~~~---~~~l~~~--~~~~~~~~spdg~~l~~~s~~~------------------  375 (415)
T 2hqs_A          319 SSDGKFMVMVSSNGGQQHIAKQDLATGG---VQVLSST--FLDETPSLAPNGTMVIYSSSQG------------------  375 (415)
T ss_dssp             CTTSSEEEEEEECSSCEEEEEEETTTCC---EEECCCS--SSCEEEEECTTSSEEEEEEEET------------------
T ss_pred             CCCCCEEEEEECcCCceEEEEEECCCCC---EEEecCC--CCcCCeEEcCCCCEEEEEEcCC------------------
Confidence            9999988887753   2 9999987542   2333221  24566889999984 4443332                  


Q ss_pred             HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                    ....|..+|.+|+..+.+....|.
T Consensus       376 --------------~~~~l~~~d~~g~~~~~l~~~~~~  399 (415)
T 2hqs_A          376 --------------MGSVLNLVSTDGRFKARLPATDGQ  399 (415)
T ss_dssp             --------------TEEEEEEEETTSCCEEECCCSSSE
T ss_pred             --------------CccEEEEEECCCCcEEEeeCCCCC
Confidence                          123578888888888877665553

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.84  E-value=4.1e-06  Score=79.87  Aligned_cols=176  Identities=11%  Similarity=0.095  Sum_probs=109.2

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCe----EEEEEecC---------------------------------------
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGT----WVNWKFID---------------------------------------  116 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~----~~~~~~~~---------------------------------------  116 (370)
                      .+++++++|++.++..++.|..|+  +|+    +..+....                                       
T Consensus         8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            568889999877777788999998  665    22232110                                       


Q ss_pred             ---------------CCceeceEEcCCCcEE-EEeCC-CceEEEc-C--CC--eEEEEeecCCcccccccceEEcCCCcE
Q 017520          117 ---------------SQTLVGLTSTKEGHLI-ICDNA-NGLHKVS-E--DG--VENFLSYVNGSKLRFANDVVEASDGSL  174 (370)
Q Consensus       117 ---------------~~p~~gl~~d~~G~L~-v~~~~-~gi~~~~-~--~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l  174 (370)
                                     +.+. +++++++|..+ ++... +.|..++ .  ++  ...+.....   ...+..++++++|+.
T Consensus        88 ~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCF---SKRPNAISIAEDDTT  163 (450)
T ss_dssp             ------------CCCCCEE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEEC---SSCEEEEEECTTSSE
T ss_pred             CccccCCCCCCCccCCceE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccC---CCCceEEEEcCCCCE
Confidence                           1355 89999999864 54433 4455555 4  55  444322111   135778999999975


Q ss_pred             EEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-----EEecCCCCccceEEccC---CCEEEEEeCCc-EEEEE
Q 017520          175 YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-----LVADGFYFANGVALSRD---EDYVVVCESWK-CRKYW  245 (370)
Q Consensus       175 ~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-----~~~~~~~~p~gi~~~~d---g~~l~v~~~~~-l~~~~  245 (370)
                      .++..                 ..+.++.++..++...     .+.........++++++   ++.++.+...+ |..|+
T Consensus       164 l~~~~-----------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          164 VIIAD-----------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH  226 (450)
T ss_dssp             EEEEE-----------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred             EEEEe-----------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence            54432                 3477888887655432     12222334577899999   88777777777 99999


Q ss_pred             eCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          246 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +...+  ....+.....+....++++ +|++.++..
T Consensus       227 ~~~~~--~~~~~~~~h~~~v~~~~~s-d~~~l~s~~  259 (450)
T 2vdu_B          227 YPQCF--IVDKWLFGHKHFVSSICCG-KDYLLLSAG  259 (450)
T ss_dssp             ESCTT--CEEEECCCCSSCEEEEEEC-STTEEEEEE
T ss_pred             CCCCc--eeeeeecCCCCceEEEEEC-CCCEEEEEe
Confidence            86542  1223222333445678888 887666554

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.84  E-value=1.7e-06  Score=76.37  Aligned_cols=169  Identities=13%  Similarity=0.085  Sum_probs=102.1

Q ss_pred             CcEEEEe---cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CC-C-eEEEEeecCCcccc
Q 017520           90 GVIYTAT---RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-G-VENFLSYVNGSKLR  161 (370)
Q Consensus        90 G~l~v~~---~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~-g-~~~~~~~~~g~~~~  161 (370)
                      |.+|.+.   .++.|+.++  +++...+......+. +++++++|+.++......|+.++ .+ + ...+..   +....
T Consensus        10 ~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~   85 (297)
T 2ojh_A           10 TRLSTGPGGSMRSSIEIFNIRTRKMRVVWQTPELFE-APNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDT---GFATI   85 (297)
T ss_dssp             --------CCCCEEEEEEETTTTEEEEEEEESSCCE-EEEECTTSSEEEEEETTEEEEEESSSCCSCEECCC---TTCCC
T ss_pred             eeEeecCCCCcceeEEEEeCCCCceeeeccCCcceE-eeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecc---ccccc
Confidence            3445443   467788888  666666666666677 99999999866655566788888 66 6 443321   22224


Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe-CCc
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE-SWK  240 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~-~~~  240 (370)
                      .+..++++++|+..+.....             ......|+.++.+++..+.+... .....+++++|++.++++. ..+
T Consensus        86 ~~~~~~~spdg~~l~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~  151 (297)
T 2ojh_A           86 CNNDHGISPDGALYAISDKV-------------EFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ  151 (297)
T ss_dssp             BCSCCEECTTSSEEEEEECT-------------TTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETT
T ss_pred             cccceEECCCCCEEEEEEeC-------------CCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCC
Confidence            56789999999744443210             01346899999877766554332 3367789999999877544 334


Q ss_pred             ---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          241 ---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       241 ---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                         |+.++.++.   ....+. .....+..++++++|+ ++++.
T Consensus       152 ~~~l~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~  191 (297)
T 2ojh_A          152 VFDIYSMDIDSG---VETRLT-HGEGRNDGPDYSPDGRWIYFNS  191 (297)
T ss_dssp             EEEEEEEETTTC---CEEECC-CSSSCEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEEECCCC---cceEcc-cCCCccccceECCCCCEEEEEe
Confidence               555555432   222222 2233456688899997 44444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.83  E-value=8.5e-06  Score=76.04  Aligned_cols=241  Identities=10%  Similarity=0.034  Sum_probs=133.7

Q ss_pred             EecCCCcCCCcceEEcCCC-cEEEEec----------CCeEEEEe--CCeEEEEEec--------CCCceeceEEcCCCc
Q 017520           72 KVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFI--------DSQTLVGLTSTKEGH  130 (370)
Q Consensus        72 ~~~~~~~~~P~~i~~d~~G-~l~v~~~----------~g~I~~~~--~g~~~~~~~~--------~~~p~~gl~~d~~G~  130 (370)
                      .++.|  ..| .+++++|| .+|+++.          ++.|..++  +++.......        ...|. ++++++||+
T Consensus        62 ~i~~g--~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~  137 (373)
T 2mad_H           62 HVNGG--FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNA  137 (373)
T ss_pred             EecCC--CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCC
Confidence            44445  368 99999988 6899862          46688999  4443322222        23588 999999995


Q ss_pred             -EEEEeCC--CceEEEcCCCeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          131 -LIICDNA--NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       131 -L~v~~~~--~gi~~~~~~g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                       ||+++..  ..|..+| ...+......+     .+..+.+.++| +.|++..                 .+|.+..+|.
T Consensus       138 ~l~v~n~~~~~~v~viD-~t~~~~~~~i~-----~~~~~~~~~~~~~~~~~~~-----------------~dg~~~~vd~  194 (373)
T 2mad_H          138 DLLFFQFAAGPAVGLVV-QGGSSDDQLLS-----SPTCYHIHPGAPSTFYLLC-----------------AQGGLAKTDH  194 (373)
T ss_pred             EEEEEecCCCCeEEEEE-CCCCEEeEEcC-----CCceEEEEeCCCceEEEEc-----------------CCCCEEEEEC
Confidence             8998753  4588888 43111111011     11123444554 5676643                 4577888888


Q ss_pred             CCCeEEEEec-----CCCCc--cceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeec--c----CCCCCCCc---ee
Q 017520          207 SSNITTLVAD-----GFYFA--NGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFA--E----NLPGAPDN---IN  269 (370)
Q Consensus       207 ~t~~~~~~~~-----~~~~p--~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~--~----~~~g~p~~---i~  269 (370)
                       +++......     ....|  ....+++++..+|+....+ ++++|..+........+.  .    ...-.|.+   ++
T Consensus       195 -~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~  273 (373)
T 2mad_H          195 -AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVA  273 (373)
T ss_pred             -CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEE
Confidence             555432111     01111  2234556655555555555 888887653211111110  0    01113555   78


Q ss_pred             ECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCC-CcEEEEEeCCCCCccccceeE
Q 017520          270 LAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAED-GTIIRNLVDPTGQLMSFVTSG  347 (370)
Q Consensus       270 ~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~~~g~~~~~~t~~  347 (370)
                      ++++| ++|++...+...-                         -....+.|..+|.+ ++++..+.... .   .....
T Consensus       274 ~s~d~~~lyV~~~~~~~~~-------------------------~~~~~~~V~VID~~t~~vv~~i~~g~-~---p~~i~  324 (373)
T 2mad_H          274 YLKSSDGIYLLTSEQSAWK-------------------------LHAAAKEVTSVTGLVGQTSSQISLGH-D---VDAIS  324 (373)
T ss_pred             ECCCCCEEEEEeccCCccc-------------------------ccCCCCeEEEEECCCCEEEEEEECCC-C---cCeEE
Confidence            88887 5999875320000                         00112458888965 67778885432 1   22233


Q ss_pred             EEECC--EEEEEeCCCCeEEEEeC
Q 017520          348 LQVDN--HLYVISLTSNFIGKVQL  369 (370)
Q Consensus       348 ~~~~g--~L~~gs~~~~~i~~~~~  369 (370)
                      ...+|  .+|+++...+.|.++++
T Consensus       325 ~s~Dg~~~l~v~~~~~~~V~ViD~  348 (373)
T 2mad_H          325 VAQDGGPDLYALSAGTEVLHIYDA  348 (373)
T ss_pred             ECCCCCeEEEEEcCCCCeEEEEEC
Confidence            33344  47777777899999886

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.83  E-value=2.6e-07  Score=85.31  Aligned_cols=143  Identities=11%  Similarity=0.081  Sum_probs=95.1

Q ss_pred             CCcceEEcC--CC--cEEEEecC---C--eEEEEe-CCeEEEEE-e----cCCCceeceEEcCCCcEEEEeCC-------
Q 017520           80 HPEDASMDK--NG--VIYTATRD---G--WIKRLQ-DGTWVNWK-F----IDSQTLVGLTSTKEGHLIICDNA-------  137 (370)
Q Consensus        80 ~P~~i~~d~--~G--~l~v~~~~---g--~I~~~~-~g~~~~~~-~----~~~~p~~gl~~d~~G~L~v~~~~-------  137 (370)
                      .|.+|.+..  +|  +||+.+..   .  .|++++ ++...++. .    ...+|+ .++++++|++|+++..       
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pN-D~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVN-DIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEE-EEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCc-eEEEeCCCCEEecCCcEeCCccc
Confidence            788988854  45  68888733   2  366677 54433332 2    235688 9999999999998641       


Q ss_pred             -----------CceEEEcCCCeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520          138 -----------NGLHKVSEDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (370)
Q Consensus       138 -----------~gi~~~~~~g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  205 (370)
                                 ++++++++...+.+...     +..+|+|+++||| .+|++++.                 .++|++|+
T Consensus       192 ~~~e~~~~~~~g~vyr~d~~~~~~~~~~-----l~~pNGia~spDg~~lYvadt~-----------------~~~I~~~~  249 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSPNDVRVVAEG-----FDFANGINISPDGKYVYIAELL-----------------AHKIHVYE  249 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECTTCCEEEEEE-----ESSEEEEEECTTSSEEEEEEGG-----------------GTEEEEEE
T ss_pred             ccchhhccCCccEEEEEECCeEEEeecC-----CcccCcceECCCCCEEEEEeCC-----------------CCeEEEEE
Confidence                       35888886334444332     4589999999999 69999873                 46888887


Q ss_pred             CC-CCeE---EEEecCCCCccceEEcc-CCCEEEEEe-CCc--EEEEEeC
Q 017520          206 PS-SNIT---TLVADGFYFANGVALSR-DEDYVVVCE-SWK--CRKYWLK  247 (370)
Q Consensus       206 ~~-t~~~---~~~~~~~~~p~gi~~~~-dg~~l~v~~-~~~--l~~~~~~  247 (370)
                      .+ .+..   +.+ .-...|.|+++|+ +|+ +|++. .++  |.+|+++
T Consensus       250 ~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~-lwva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          250 KHANWTLTPLRVL-SFDTLVDNISVDPVTGD-LWVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             ECTTSCEEEEEEE-ECSSEEEEEEECTTTCC-EEEEEESCHHHHHSCCTT
T ss_pred             ECCCCcEecCEEE-eCCCCCceEEEeCCCCc-EEEEecCCceEEEEECCC
Confidence            54 2332   222 2235789999999 598 88854 343  5555543

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.78  E-value=1.3e-06  Score=81.04  Aligned_cols=225  Identities=11%  Similarity=0.023  Sum_probs=143.9

Q ss_pred             CCcceEEc-CCCcEEEEec---CC---eEEEEe-C---C------eE-EEEEe--cC---CCceeceEEcCCCcEEEEeC
Q 017520           80 HPEDASMD-KNGVIYTATR---DG---WIKRLQ-D---G------TW-VNWKF--ID---SQTLVGLTSTKEGHLIICDN  136 (370)
Q Consensus        80 ~P~~i~~d-~~G~l~v~~~---~g---~I~~~~-~---g------~~-~~~~~--~~---~~p~~gl~~d~~G~L~v~~~  136 (370)
                      -|.+|++| .+|++|++-.   .|   .|..+. +   +      .+ +.|..  .+   -.+. ++.+|+.|+|||.|.
T Consensus        27 ~P~gv~vd~~~gRiFvt~PR~~~gvp~TL~~v~~~~~~~~~~~~p~ll~PYP~w~~~~~lvsV~-~v~iD~~~rLWVLDt  105 (381)
T 3q6k_A           27 ISTAFAYDAEGEKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHKTGKELTSIY-QPVIDDCRRLWVVDI  105 (381)
T ss_dssp             CCCEEEEETTTTEEEEECCTTSTTCSCSEEEEEHHHHTTCTTCSSCCBEECTTCSSSCSSSCEE-EEEECTTCEEEEEEC
T ss_pred             ceeeeeeecCCCcEEEEeCCCCCCCCcEEEEEeCCCCcccccCCcccccCCCCCccccceEEee-EEEEcCCCcEEEEeC
Confidence            48889995 8999999982   22   455665 2   1      34 55532  12   2467 899999999999986


Q ss_pred             CC----------------ceEEEc-C-C--C-eEEEEe-ecCCcccccccceEEc-C-------CCcEEEEeCCCCCCCc
Q 017520          137 AN----------------GLHKVS-E-D--G-VENFLS-YVNGSKLRFANDVVEA-S-------DGSLYFTVSSSKYLPH  186 (370)
Q Consensus       137 ~~----------------gi~~~~-~-~--g-~~~~~~-~~~g~~~~~~~~l~~d-~-------~G~l~v~d~~~~~~~~  186 (370)
                      +.                .|+.+| . +  . ++.+.- ...-.+..+.++|++| .       ++.+||+|..      
T Consensus       106 G~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~------  179 (381)
T 3q6k_A          106 GSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFL------  179 (381)
T ss_dssp             SSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETT------
T ss_pred             CCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCC------
Confidence            51                266777 3 4  3 333321 1111123578899999 2       4679999973      


Q ss_pred             cceecccccCCCceEEEEeCCCCeEEEEecCC-------------------CCccceEEccC----CCEEEEEeCCc--E
Q 017520          187 EYCLDILEGKPHGQLLKYDPSSNITTLVADGF-------------------YFANGVALSRD----EDYVVVCESWK--C  241 (370)
Q Consensus       187 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-------------------~~p~gi~~~~d----g~~l~v~~~~~--l  241 (370)
                                 .++|++||..+++...+.+..                   ....||+++++    ++.||+.-..+  +
T Consensus       180 -----------~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~l  248 (381)
T 3q6k_A          180 -----------RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKV  248 (381)
T ss_dssp             -----------TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEE
T ss_pred             -----------CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcE
Confidence                       467888888877665554211                   24568999998    88999998777  7


Q ss_pred             EEEEe---CCCC-CCceeeeccCCCCCCC--ceeEC-CCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520          242 RKYWL---KGER-KGKLETFAENLPGAPD--NINLA-PDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  314 (370)
Q Consensus       242 ~~~~~---~~~~-~~~~~~~~~~~~g~p~--~i~~d-~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
                      +++..   ..+. ...++.+.+ .+...+  ++++| ++|++|++....                               
T Consensus       249 y~V~T~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~-------------------------------  296 (381)
T 3q6k_A          249 YSVNTKELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANT-------------------------------  296 (381)
T ss_dssp             EEEEHHHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSS-------------------------------
T ss_pred             EEEEHHHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccC-------------------------------
Confidence            77762   2221 223333332 221234  35676 899999998764                               


Q ss_pred             CCceEEEEECCCC-c-----EEEEEeCCCCCccccceeEEEE-CCEEEEEeCC
Q 017520          315 GGGAHLIHVAEDG-T-----IIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLT  360 (370)
Q Consensus       315 ~~~g~v~~~~~~g-~-----~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~  360 (370)
                         ..|.+.++++ .     ....++++ .  +.+++.+... +|+||+-+-.
T Consensus       297 ---~aI~~w~~~~~~~~~~n~~~l~~d~-~--l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          297 ---KQVSCWNTQKMPLRMKNTDVVYTSS-R--FVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             ---SEEEEEETTSCSBCGGGEEEEEECT-T--CCSEEEEEECTTSCEEEEECS
T ss_pred             ---CeEEEEeCCCCccccCceEEEEECC-C--ccccCeEEECCCCeEEEEECc
Confidence               4689999887 2     34455665 2  4466777654 6899998744

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.77  E-value=4.5e-06  Score=78.98  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=101.2

Q ss_pred             CeEEEEe-CC-eEEEEEecCCCceeceEEcCCCc-EEEEeCCC---ceEEEc-CCC-eEEEEeecCCcccccccceEEcC
Q 017520           99 GWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS  170 (370)
Q Consensus        99 g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~  170 (370)
                      +.|+.++ ++ ....+........ ++++++||+ |+.+....   .|+.++ .+| ...+... .    ..+..++++|
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~~v~-~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~-~----~~~~~~~~sp  232 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSP  232 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECT
T ss_pred             ceEEEEcCCCCCCEEEeCCCCcce-eeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecC-C----CcccCEEEcC
Confidence            6888888 54 4555555556677 899999997 44444332   577788 566 5444321 1    2567889999


Q ss_pred             CCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc---EEEEE
Q 017520          171 DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK---CRKYW  245 (370)
Q Consensus       171 ~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~  245 (370)
                      ||+ |+++.+.               .....|+.+|.++++...+.........++++|||+.++++.. .+   |++++
T Consensus       233 dg~~la~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          233 DGSKLAFALSK---------------TGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             TSSEEEEEECT---------------TSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CCCEEEEEEec---------------CCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            997 6656431               1345799999988877665544445677899999998877764 33   88888


Q ss_pred             eCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          246 LKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      +++.+   ...+. ........++++++|++.+..
T Consensus       298 ~~~~~---~~~l~-~~~~~~~~~~~spdG~~l~~~  328 (415)
T 2hqs_A          298 INGGA---PQRIT-WEGSQNQDADVSSDGKFMVMV  328 (415)
T ss_dssp             TTSSC---CEECC-CSSSEEEEEEECTTSSEEEEE
T ss_pred             CCCCC---EEEEe-cCCCcccCeEECCCCCEEEEE
Confidence            76542   22222 112233457889999744443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.77  E-value=7.2e-06  Score=74.87  Aligned_cols=180  Identities=13%  Similarity=0.017  Sum_probs=111.8

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC------CceEEEc-CCC--
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA------NGLHKVS-EDG--  147 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~------~gi~~~~-~~g--  147 (370)
                      ...+++++++|. |++++.+|.|..|+  +++..........+. .++++++|..+++...      +.+..++ ..+  
T Consensus        76 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~  154 (369)
T 3zwl_B           76 TIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSA  154 (369)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCcc
Confidence            456788888775 55666899999999  565444444555667 9999999986655433      3455555 222  


Q ss_pred             eEEEEeecC--------CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-CeEEE-EecC
Q 017520          148 VENFLSYVN--------GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NITTL-VADG  217 (370)
Q Consensus       148 ~~~~~~~~~--------g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~~~~-~~~~  217 (370)
                      ...+.....        ......+..++++++|+..++..                 .++.|..||..+ +.... +...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~  217 (369)
T 3zwl_B          155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH-----------------KDGKISKYDVSNNYEYVDSIDLH  217 (369)
T ss_dssp             TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE-----------------TTSEEEEEETTTTTEEEEEEECC
T ss_pred             ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc-----------------CCCEEEEEECCCCcEeEEEEecC
Confidence            111111000        00112567889999997655532                 357899999886 34333 3333


Q ss_pred             CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          218 FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ......++++++++.++.+...+ |..||+...+  ....+.  .......++++++|.+.+...
T Consensus       218 ~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~--~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          218 EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ--VLKKYE--TDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEEEEE--CSSCEEEEEECSSSSEEEEEE
T ss_pred             CCceeEEEECCCCCEEEEecCCceEEEEECCCCc--eeeeec--CCCCceeEEecCCCceEEEee
Confidence            44567899999999888887777 9999976532  122222  223355688899887555543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.76  E-value=3.5e-06  Score=79.48  Aligned_cols=188  Identities=9%  Similarity=0.046  Sum_probs=112.0

Q ss_pred             CcEEEEe-cCCeEEEEe--CC----eEEEEEe-------cC-CCceeceEEcCCCcEEEEeCC-------CceEEEc-CC
Q 017520           90 GVIYTAT-RDGWIKRLQ--DG----TWVNWKF-------ID-SQTLVGLTSTKEGHLIICDNA-------NGLHKVS-ED  146 (370)
Q Consensus        90 G~l~v~~-~~g~I~~~~--~g----~~~~~~~-------~~-~~p~~gl~~d~~G~L~v~~~~-------~gi~~~~-~~  146 (370)
                      .+||+.. .+++|+.+|  ..    ++.....       .+ .+|+ ++...++| +||+..+       +++..+| ++
T Consensus        96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph-~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T  173 (462)
T 2ece_A           96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLH-TVHCGPDA-IYISALGNEEGEGPGGILMLDHYS  173 (462)
T ss_dssp             CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEE-EEEECSSC-EEEEEEEETTSCSCCEEEEECTTT
T ss_pred             CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCccc-ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC
Confidence            4788877 678899999  22    3333331       12 3789 99999999 9997543       3699999 55


Q ss_pred             C-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCcc-----ceecccccCCCceEEEEeCCCCeEEEEecC---
Q 017520          147 G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE-----YCLDILEGKPHGQLLKYDPSSNITTLVADG---  217 (370)
Q Consensus       147 g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~-----~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---  217 (370)
                      + +..-... .+.+..+..++.+.++++++++..   |+...     +....++.....+|..||.++++......-   
T Consensus       174 ~~v~~~~~~-~~~~~~~~Yd~~~~p~~~~mvsS~---wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~  249 (462)
T 2ece_A          174 FEPLGKWEI-DRGDQYLAYDFWWNLPNEVLVSSE---WAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEE  249 (462)
T ss_dssp             CCEEEECCS-BCTTCCCCCCEEEETTTTEEEECB---CCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTT
T ss_pred             CeEEEEEcc-CCCCccccceEEECCCCCEEEEcc---CcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCC
Confidence            5 3222111 222334567888899998766643   22110     111111113467899999987754332221   


Q ss_pred             CCCccceEE--ccCCCEEEEEeC-----Cc--EEEEEeCCCCCCceee-------eccCC----------CCCCCceeEC
Q 017520          218 FYFANGVAL--SRDEDYVVVCES-----WK--CRKYWLKGERKGKLET-------FAENL----------PGAPDNINLA  271 (370)
Q Consensus       218 ~~~p~gi~~--~~dg~~l~v~~~-----~~--l~~~~~~~~~~~~~~~-------~~~~~----------~g~p~~i~~d  271 (370)
                      ...|..+.+  +++++..|++..     ..  |++|..++........       +...+          ++.|.+|.++
T Consensus       250 g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          250 NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            135666766  999999999875     43  7665544321111111       00011          3568899999


Q ss_pred             CCCC-EEEEEecC
Q 017520          272 PDGT-FWIAIIKL  283 (370)
Q Consensus       272 ~~G~-lwv~~~~~  283 (370)
                      +||+ ||+++.+.
T Consensus       330 ~DGrfLYVSnrg~  342 (462)
T 2ece_A          330 LDDKFLYLSLWGI  342 (462)
T ss_dssp             TTSCEEEEEETTT
T ss_pred             CCCCEEEEEeCCC
Confidence            9996 88887654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.75  E-value=1.6e-06  Score=80.51  Aligned_cols=184  Identities=14%  Similarity=0.089  Sum_probs=117.1

Q ss_pred             CcceEEcCCCcE-EEEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEe
Q 017520           81 PEDASMDKNGVI-YTAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        81 P~~i~~d~~G~l-~v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~  153 (370)
                      ...+++.+||.+ .+++  .++.|..|+  +++........+... ++++++||.++++....++..++ .++ ......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~  214 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKVVAYITGSSLEVISTVTGSCIARKT  214 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSEEEEECSSCEEEEETTTCCEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCceEEeccceeEEEEEeccCcceeeee
Confidence            456899999965 4555  578899999  666544444556677 99999999988876667888888 556 221111


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-----EecCCCCccceEEcc
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-----VADGFYFANGVALSR  228 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-----~~~~~~~p~gi~~~~  228 (370)
                       ..+ ....+..+++.++|+..++.+..             ......++.++........     +.........++++|
T Consensus       215 -~~~-~~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          215 -DFD-KNWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             -CCC-TTEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             -cCC-CCCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence             111 12356789999999877664320             0011245666655443322     223334457899999


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ||+.|..+...+ |..||+...+  ....+.....+....+++++||++.++...
T Consensus       280 dg~~lasgs~D~~V~iwd~~~~~--~~~~~~~gH~~~V~~v~fSpdg~~laS~S~  332 (365)
T 4h5i_A          280 KGELAVLASNDNSIALVKLKDLS--MSKIFKQAHSFAITEVTISPDSTYVASVSA  332 (365)
T ss_dssp             TSCEEEEEETTSCEEEEETTTTE--EEEEETTSSSSCEEEEEECTTSCEEEEEET
T ss_pred             CCCceEEEcCCCEEEEEECCCCc--EEEEecCcccCCEEEEEECCCCCEEEEEeC
Confidence            999877777777 9999976432  122232233344567899999997777544

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.74  E-value=3e-05  Score=70.94  Aligned_cols=182  Identities=12%  Similarity=0.086  Sum_probs=113.5

Q ss_pred             CCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--
Q 017520           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--  147 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--  147 (370)
                      +....-.++++.++|. |..++.+|.|..|+  +++ ...+........ .++++++|++.++....+ +..++ .++  
T Consensus        53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~  131 (340)
T 1got_B           53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTREG  131 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred             CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEE-EEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence            4344567788988886 45566899999999  554 334444444566 899999998766544444 44444 322  


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceE
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVA  225 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~  225 (370)
                       .+... ...+. ...+..+.+.+++.+..+.                  .++.|..||..+++......+ ......++
T Consensus       132 ~~~~~~-~~~~h-~~~v~~~~~~~~~~l~s~s------------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~  191 (340)
T 1got_B          132 NVRVSR-ELAGH-TGYLSCCRFLDDNQIVTSS------------------GDTTCALWDIETGQQTTTFTGHTGDVMSLS  191 (340)
T ss_dssp             SCEEEE-EEECC-SSCEEEEEEEETTEEEEEE------------------TTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred             cceeEE-EecCC-CccEEEEEECCCCcEEEEE------------------CCCcEEEEECCCCcEEEEEcCCCCceEEEE
Confidence             22221 11221 1345667777777765543                  347899999887766544433 33457899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ++++++.++.+...+ |..||+....  ....+. ........++++++|++.++..
T Consensus       192 ~~~~~~~l~sg~~d~~v~~wd~~~~~--~~~~~~-~h~~~v~~v~~~p~~~~l~s~s  245 (340)
T 1got_B          192 LAPDTRLFVSGACDASAKLWDVREGM--CRQTFT-GHESDINAICFFPNGNAFATGS  245 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEeCCCcEEEEECCCCe--eEEEEc-CCcCCEEEEEEcCCCCEEEEEc
Confidence            999999776666666 8889876432  122222 2333456688999998666554

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.74  E-value=1.3e-06  Score=82.40  Aligned_cols=187  Identities=13%  Similarity=0.118  Sum_probs=110.5

Q ss_pred             cCCCcceEEcCCCcEEEEe-cC------CeEEEEe--CCeEEEEEecC----CCceeceEEcCCCcEEEEeC--------
Q 017520           78 VNHPEDASMDKNGVIYTAT-RD------GWIKRLQ--DGTWVNWKFID----SQTLVGLTSTKEGHLIICDN--------  136 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~-~~------g~I~~~~--~g~~~~~~~~~----~~p~~gl~~d~~G~L~v~~~--------  136 (370)
                      ...|+.+...++| ||++. .+      |+|..+|  ++++..-....    +.++ .+.+.++++.+++..        
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            4579999999999 99866 32      6899999  46644332222    2244 567788888655542        


Q ss_pred             ------------CCceEEEc-CCC-eEEEEeecCCcccccccceEE--cCCC-cEEEEeCCCCCCCccceecccccCCCc
Q 017520          137 ------------ANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVE--ASDG-SLYFTVSSSKYLPHEYCLDILEGKPHG  199 (370)
Q Consensus       137 ------------~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~--d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g  199 (370)
                                  .+.|..++ .++ ......  .+.....+..|.+  +++| .+|++..-+            -...++
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~--vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~------------~~~Lss  280 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT--LGEENRMALELRPLHDPTKLMGFINMVVS------------LKDLSS  280 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEE--SCTTEEEEEEEEECSSTTCCEEEEEEEEE------------TTTCCE
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEe--cCCCCCccceeEeeECCCCCEEEEEEeee------------ccCCCc
Confidence                        35688888 555 222112  1211234566666  8998 488875400            000123


Q ss_pred             eEEEEeCCCCeEEEEe-----c-----C-----------CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCc-ee
Q 017520          200 QLLKYDPSSNITTLVA-----D-----G-----------FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGK-LE  255 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~-----~-----~-----------~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~-~~  255 (370)
                      .|+++..+.+.++...     .     .           ...|.+|.+++||++||+++.+.  |.+|++..+...+ ..
T Consensus       281 ~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~  360 (462)
T 2ece_A          281 SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG  360 (462)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE
T ss_pred             eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence            4443332223322111     0     0           24578999999999999999987  9999986432111 11


Q ss_pred             ee-cc------------CCCCCCCceeECCCCC-EEEEE
Q 017520          256 TF-AE------------NLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       256 ~~-~~------------~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                      .+ ..            ...+.|.++++++||+ +|++.
T Consensus       361 ~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          361 KVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             EEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            11 11            1223599999999996 77764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.74  E-value=8.6e-06  Score=76.29  Aligned_cols=171  Identities=13%  Similarity=0.081  Sum_probs=107.2

Q ss_pred             EEcCCCc-EEEEecCCeEEEEe--CCeEEEEE-ecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecC
Q 017520           85 SMDKNGV-IYTATRDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVN  156 (370)
Q Consensus        85 ~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~-~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~  156 (370)
                      ++.++|+ |.+++.+|.|..|+  +++..... ...+... +++++++|+++++... +.|..++ .++  ...+...  
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  180 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGH--  180 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECC--
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCC--
Confidence            4456765 55667889999999  55544432 3445566 8999999975554434 4466666 555  4444211  


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-------------------
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------------------  217 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------------------  217 (370)
                         ...+..+++.++|+..++.+                 .++.|..||..+++.......                   
T Consensus       181 ---~~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  240 (420)
T 3vl1_A          181 ---RATVTDIAIIDRGRNVLSAS-----------------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDR  240 (420)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEE-----------------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCS
T ss_pred             ---CCcEEEEEEcCCCCEEEEEc-----------------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcc
Confidence               13578899999998666643                 346788888877665443321                   


Q ss_pred             ------CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          218 ------FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       218 ------~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                            ......++++++++.++.+...+ |..||+...+  ....+..........++++++|. +.++.
T Consensus       241 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~g  309 (420)
T 3vl1_A          241 QLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE--QTIQLPSKFTCSCNSLTVDGNNANYIYAG  309 (420)
T ss_dssp             SCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC--EEEEECCTTSSCEEEEEECSSCTTEEEEE
T ss_pred             eeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc--eeEEcccccCCCceeEEEeCCCCCEEEEE
Confidence                  12334577889999888887777 9999976532  12222222233455688899987 44443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.73  E-value=2.1e-05  Score=71.79  Aligned_cols=182  Identities=12%  Similarity=0.147  Sum_probs=111.1

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~  150 (370)
                      ....++++.++|. |++++.+|.|..|+  +++. ..+....+... +++++++|+++++... +.|..++ .++  ...
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  111 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIW-SIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT  111 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            4567889998886 55666899999999  5553 34433455567 9999999976655444 4466666 556  333


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe------------EEEEecC-
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------TTLVADG-  217 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~------------~~~~~~~-  217 (370)
                      +.   .   ...+..++++++|+..++....            .....+.|..||..++.            ...+... 
T Consensus       112 ~~---~---~~~v~~~~~~~~~~~l~~~~~~------------~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  173 (369)
T 3zwl_B          112 WK---S---PVPVKRVEFSPCGNYFLAILDN------------VMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE  173 (369)
T ss_dssp             EE---C---SSCEEEEEECTTSSEEEEEECC------------BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred             ee---c---CCCeEEEEEccCCCEEEEecCC------------ccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence            32   1   1357789999999866664320            00122566666653221            1111111 


Q ss_pred             -CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          218 -FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       218 -~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                       ......++++++++.++++...+ |..|++.... .....+ ....+....++++++|++.++..
T Consensus       174 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          174 GLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNY-EYVDSI-DLHEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             TCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTT-EEEEEE-ECCSSCEEEEEECTTSSEEEEEE
T ss_pred             CccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCc-EeEEEE-ecCCCceeEEEECCCCCEEEEec
Confidence             12567789999999888888777 9999976521 112222 22333456688999997655543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.73  E-value=9.1e-07  Score=82.34  Aligned_cols=220  Identities=10%  Similarity=-0.069  Sum_probs=124.0

Q ss_pred             ceEecCCCcCCCcceEEcCCC-cEEEEec----------CCeEEEEe--CCeEEEEEecC--------CCceeceEEcCC
Q 017520           70 FIKVGEGSVNHPEDASMDKNG-VIYTATR----------DGWIKRLQ--DGTWVNWKFID--------SQTLVGLTSTKE  128 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G-~l~v~~~----------~g~I~~~~--~g~~~~~~~~~--------~~p~~gl~~d~~  128 (370)
                      ..+++.|.  .| ++++++|| .+|+++.          ++.|..+|  +++........        ..|. ++++++|
T Consensus        59 ~~~i~vG~--~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpD  134 (368)
T 1mda_H           59 LGHSLGAF--LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCAS  134 (368)
T ss_dssp             EEEEEECT--TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTT
T ss_pred             EEEEeCCC--CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCC
Confidence            34455563  68 89999987 7999972          56799999  66644333222        4699 9999999


Q ss_pred             C-cEEEEeCC-Cc-eEE--Ec-CCCeEEEEeecCCccccccc----ceEEcCCCcEEEEeCCC------CCC--------
Q 017520          129 G-HLIICDNA-NG-LHK--VS-EDGVENFLSYVNGSKLRFAN----DVVEASDGSLYFTVSSS------KYL--------  184 (370)
Q Consensus       129 G-~L~v~~~~-~g-i~~--~~-~~g~~~~~~~~~g~~~~~~~----~l~~d~~G~l~v~d~~~------~~~--------  184 (370)
                      | .|||++.. .. +..  +| .+ +..+.  ..+...-.+.    -++..++|++.+.+...      +..        
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t-v~~i~--v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~  211 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD-DQLTK--SASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE-EEEEE--CSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh-ceEEE--CCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeee
Confidence            9 59999864 33 444  56 23 22221  1110000111    13334455433333211      000        


Q ss_pred             Ccccee------cccccCCCceEEEEeCCCCeEEEEec----------CCCCccc---eEEccCCCEEEEEeC---C---
Q 017520          185 PHEYCL------DILEGKPHGQLLKYDPSSNITTLVAD----------GFYFANG---VALSRDEDYVVVCES---W---  239 (370)
Q Consensus       185 ~~~~~~------~~~~~~~~g~l~~~d~~t~~~~~~~~----------~~~~p~g---i~~~~dg~~l~v~~~---~---  239 (370)
                      ......      .+..... +.|+.+|..++..+....          ....|.|   +++++|++.+|++..   +   
T Consensus       212 vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          212 CSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             BCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             CCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence            000000      0000011 567888876543332211          1123455   889999999999754   3   


Q ss_pred             ---c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEe-cCchhHHHhhhcchhHHHHHHhCCcccccccc
Q 017520          240 ---K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAII-KLDARRMKILNSSKLIKHVLAAYPKLFSQFIT  313 (370)
Q Consensus       240 ---~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (370)
                         . +.++|....+.  ...+  ..+..|.+|++++||+ +|+++. ..                              
T Consensus       291 ~~~~~~~ViD~~t~~v--v~~i--~vg~~p~gi~~s~Dg~~l~va~~~~~------------------------------  336 (368)
T 1mda_H          291 AAAENTSSVTASVGQT--SGPI--SNGHDSDAIIAAQDGASDNYANSAGT------------------------------  336 (368)
T ss_dssp             SCEEEEEEEESSSCCE--EECC--EEEEEECEEEECCSSSCEEEEEETTT------------------------------
T ss_pred             ccCCCEEEEECCCCeE--EEEE--ECCCCcceEEECCCCCEEEEEccCCC------------------------------
Confidence               3 77999765422  1111  1223599999999996 899987 33                              


Q ss_pred             CCCceEEEEECC-CCcEEEEEeC
Q 017520          314 LGGGAHLIHVAE-DGTIIRNLVD  335 (370)
Q Consensus       314 ~~~~g~v~~~~~-~g~~~~~~~~  335 (370)
                          +.|..+|. .++++..+..
T Consensus       337 ----~~VsVID~~t~kvv~~I~v  355 (368)
T 1mda_H          337 ----EVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ----TEEEEEESSSCEEEEECCC
T ss_pred             ----CeEEEEECCCCcEEEEEEC
Confidence                35888885 5788887754

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.72  E-value=1.2e-05  Score=74.57  Aligned_cols=87  Identities=8%  Similarity=0.142  Sum_probs=55.7

Q ss_pred             CcEEEEe------cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC----------CCceEEEc-CCC--
Q 017520           90 GVIYTAT------RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG--  147 (370)
Q Consensus        90 G~l~v~~------~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~----------~~gi~~~~-~~g--  147 (370)
                      ..+|+.+      .++.|+.+|  +++..........|  ++++++||+ ||+++.          .+.|..++ .++  
T Consensus        16 ~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~   93 (361)
T 2oiz_A           16 NRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF   93 (361)
T ss_dssp             GEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE
T ss_pred             CEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE
Confidence            4688876      256899999  67654433333334  799999995 899863          12377788 455  


Q ss_pred             eEEEEeecCCc--ccccccceEEcCCC-cEEEEeC
Q 017520          148 VENFLSYVNGS--KLRFANDVVEASDG-SLYFTVS  179 (370)
Q Consensus       148 ~~~~~~~~~g~--~~~~~~~l~~d~~G-~l~v~d~  179 (370)
                      ...+... .+.  ....|..+++++|| .||+++.
T Consensus        94 ~~~i~~~-~~~~~~g~~p~~i~~spdg~~l~v~n~  127 (361)
T 2oiz_A           94 EKEISLP-PKRVQGLNYDGLFRQTTDGKFIVLQNA  127 (361)
T ss_dssp             EEEEEEC-TTBCCBCCCGGGEEECTTSSEEEEEEE
T ss_pred             EEEEEcC-ccccccCCCcceEEECCCCCEEEEECC
Confidence            3333211 110  12468899999999 5888864

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.72  E-value=5e-05  Score=68.98  Aligned_cols=177  Identities=12%  Similarity=0.075  Sum_probs=111.4

Q ss_pred             CCcceEEcCC----C-cEEEEecCCeEEEEe--CCeEEEE---EecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC
Q 017520           80 HPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTWVNW---KFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~----G-~l~v~~~~g~I~~~~--~g~~~~~---~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g  147 (370)
                      .-.++++.++    + .|..|+.++.|..|+  +++....   ........ ++.+.+++.+.++....+ |..++ .++
T Consensus        34 ~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~-~~~~~~~~~~l~s~s~D~~i~lWd~~~~  112 (321)
T 3ow8_A           34 AIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVV-SVDISHTLPIAASSSLDAHIRLWDLENG  112 (321)
T ss_dssp             CEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             cEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEE-EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            4566777643    3 466777899898888  5543322   22233456 888999988776654444 55555 566


Q ss_pred             --eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccce
Q 017520          148 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGV  224 (370)
Q Consensus       148 --~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi  224 (370)
                        +..+...     ...+..+++.|+|+..++..                 ..+.+..+|.++++..... ........+
T Consensus       113 ~~~~~~~~~-----~~~~~~~~~spdg~~l~~g~-----------------~dg~v~i~~~~~~~~~~~~~~~~~~v~~~  170 (321)
T 3ow8_A          113 KQIKSIDAG-----PVDAWTLAFSPDSQYLATGT-----------------HVGKVNIFGVESGKKEYSLDTRGKFILSI  170 (321)
T ss_dssp             EEEEEEECC-----TTCCCCEEECTTSSEEEEEC-----------------TTSEEEEEETTTCSEEEEEECSSSCEEEE
T ss_pred             CEEEEEeCC-----CccEEEEEECCCCCEEEEEc-----------------CCCcEEEEEcCCCceeEEecCCCceEEEE
Confidence              3333211     12466799999998776643                 3578888998766554332 333456789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++++|++.++.+...+ |..||+...+  ....+ .........++++++|++.++...
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~--~~~~~-~~h~~~v~~l~~spd~~~l~s~s~  226 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGK--LLHTL-EGHAMPIRSLTFSPDSQLLVTASD  226 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTE--EEEEE-CCCSSCCCEEEECTTSCEEEEECT
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCc--EEEEE-cccCCceeEEEEcCCCCEEEEEcC
Confidence            9999999888887777 9999976532  12222 223334567889999986665543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.71  E-value=8.1e-06  Score=75.79  Aligned_cols=182  Identities=9%  Similarity=0.008  Sum_probs=112.3

Q ss_pred             CCcceEEcCC----C----cEEEEecCCeEEEEe--CCe------EEEEEec-----CCCceeceEEc----CCCcE-EE
Q 017520           80 HPEDASMDKN----G----VIYTATRDGWIKRLQ--DGT------WVNWKFI-----DSQTLVGLTST----KEGHL-II  133 (370)
Q Consensus        80 ~P~~i~~d~~----G----~l~v~~~~g~I~~~~--~g~------~~~~~~~-----~~~p~~gl~~d----~~G~L-~v  133 (370)
                      ...++++.++    |    .|++++.+|.|..|+  +++      ...+...     ..... ++++.    +++.. ++
T Consensus        64 ~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~  142 (397)
T 1sq9_A           64 GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRLV  142 (397)
T ss_dssp             CEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEEE
T ss_pred             cEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEEE
Confidence            4567888877    7    455667889999998  444      4444433     25566 89999    88875 55


Q ss_pred             E-eCCCceEEEc-CC------C--eE-----EEEee--cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccC
Q 017520          134 C-DNANGLHKVS-ED------G--VE-----NFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       134 ~-~~~~gi~~~~-~~------g--~~-----~~~~~--~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      + ...+.|..++ .+      +  +.     .+...  ........+..+++.++| ++++..                 
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~-----------------  204 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF-----------------  204 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC-----------------
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe-----------------
Confidence            4 4444566666 44      3  33     33210  001112457889999999 555533                 


Q ss_pred             CCceEEEEeCCCCeEEEEecC-------CCCccceEEccCCCEEEEEeCC---c-EEEEEeCCCCCCceeeeccC-----
Q 017520          197 PHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYVVVCESW---K-CRKYWLKGERKGKLETFAEN-----  260 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~-------~~~p~gi~~~~dg~~l~v~~~~---~-l~~~~~~~~~~~~~~~~~~~-----  260 (370)
                      .++.|..||..+++.......       ......++++++++.++.+...   + |..|++...+  ....+...     
T Consensus       205 ~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~--~~~~~~~~~~~~~  282 (397)
T 1sq9_A          205 NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE--RIGSLSVPTHSSQ  282 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCC--EEEEECBC-----
T ss_pred             CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCc--ccceeccCccccc
Confidence            457899999887765544443       4456789999999988888877   6 9999976532  12222210     


Q ss_pred             -------CCCCCCceeECCCCCEEEEEec
Q 017520          261 -------LPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       261 -------~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                             ..+....++++++|++.++...
T Consensus       283 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  311 (397)
T 1sq9_A          283 ASLGEFAHSSWVMSLSFNDSGETLCSAGW  311 (397)
T ss_dssp             ---CCBSBSSCEEEEEECSSSSEEEEEET
T ss_pred             ccccccccCCcEEEEEECCCCCEEEEEeC
Confidence                   2233456888999986665543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.70  E-value=2.8e-05  Score=71.14  Aligned_cols=218  Identities=11%  Similarity=0.032  Sum_probs=135.6

Q ss_pred             CcceEEcCCCcE-EEEecCCeEEEEe--CC--e--E-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eE
Q 017520           81 PEDASMDKNGVI-YTATRDGWIKRLQ--DG--T--W-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VE  149 (370)
Q Consensus        81 P~~i~~d~~G~l-~v~~~~g~I~~~~--~g--~--~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~  149 (370)
                      ..++++.++|.. .++..++.|..|+  .+  .  . ..+....+... .+.+.+++.+..+..++.|..++ .++  ..
T Consensus       100 v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~  178 (340)
T 1got_B          100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS-CCRFLDDNQIVTSSGDTTCALWDIETGQQTT  178 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEE-EEEEEETTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEE-EEEECCCCcEEEEECCCcEEEEECCCCcEEE
Confidence            456778887764 4566888888888  32  1  1 22233344455 78888888877777666677777 566  33


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~  228 (370)
                      .+    .+. ...+..+++.++|+++++.+                 .++.|..||..++....... .....+.++++|
T Consensus       179 ~~----~~h-~~~v~~~~~~~~~~~l~sg~-----------------~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p  236 (340)
T 1got_B          179 TF----TGH-TGDVMSLSLAPDTRLFVSGA-----------------CDASAKLWDVREGMCRQTFTGHESDINAICFFP  236 (340)
T ss_dssp             EE----CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECT
T ss_pred             EE----cCC-CCceEEEEECCCCCEEEEEe-----------------CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC
Confidence            32    111 13578899999999877754                 35789999987776544333 334567899999


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      +++.++.+...+ |..||+...+  ....+.. ........++++++|++.++....                       
T Consensus       237 ~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d-----------------------  291 (340)
T 1got_B          237 NGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-----------------------  291 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECTTSSEEEEEETT-----------------------
T ss_pred             CCCEEEEEcCCCcEEEEECCCCc--EEEEEccCCcccceEEEEECCCCCEEEEECCC-----------------------
Confidence            999877777777 8889876431  1122211 111123457789999877665443                       


Q ss_pred             cccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CC-EEEEEeCCC
Q 017520          307 LFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTS  361 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~gs~~~  361 (370)
                                 +.+..+| ..++.+..+....+    .++.+... +| .|.-|+..+
T Consensus       292 -----------~~i~vwd~~~~~~~~~~~~h~~----~v~~~~~s~dg~~l~s~s~D~  334 (340)
T 1got_B          292 -----------FNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVATGSWDS  334 (340)
T ss_dssp             -----------SEEEEEETTTCCEEEEEECCSS----CEEEEEECTTSSCEEEEETTS
T ss_pred             -----------CeEEEEEcccCcEeeEeecCCC----cEEEEEEcCCCCEEEEEcCCc
Confidence                       3567777 45777777765443    35555554 34 355555443

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.69  E-value=3.5e-06  Score=74.25  Aligned_cols=176  Identities=13%  Similarity=0.040  Sum_probs=109.3

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--C-CeEEEEEecC--CCceeceEEcCCCcEEEEeC-----CCceEEEc-CCC-
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--D-GTWVNWKFID--SQTLVGLTSTKEGHLIICDN-----ANGLHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~-g~~~~~~~~~--~~p~~gl~~d~~G~L~v~~~-----~~gi~~~~-~~g-  147 (370)
                      ...+++++++|..++...++.|+.++  + ++........  ..+. +++++++|+.++...     ...|+.++ .++ 
T Consensus        43 ~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~  121 (297)
T 2ojh_A           43 LFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT  121 (297)
T ss_dssp             CCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC
T ss_pred             ceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc
Confidence            57789999999866656688999999  5 6555443322  3456 899999997544432     23577777 444 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~  226 (370)
                      .+.+...      ..++.++++++|+ ++++...               ...-.|+.++.+++....+.........+++
T Consensus       122 ~~~~~~~------~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  180 (297)
T 2ojh_A          122 PRLMTKN------LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPDY  180 (297)
T ss_dssp             CEECCSS------SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEEE
T ss_pred             eEEeecC------CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccceE
Confidence            4433211      1356789999996 5545321               0223688888877777665555556678999


Q ss_pred             ccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE-EEEEe
Q 017520          227 SRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF-WIAII  281 (370)
Q Consensus       227 ~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l-wv~~~  281 (370)
                      ++||+.++++.. .+   |+.++.++.   ....+. ........++++++|+. +++..
T Consensus       181 s~dg~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~  236 (297)
T 2ojh_A          181 SPDGRWIYFNSSRTGQMQIWRVRVDGS---SVERIT-DSAYGDWFPHPSPSGDKVVFVSY  236 (297)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTSS---CEEECC-CCSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCCEEEEEecCCCCccEEEECCCCC---CcEEEe-cCCcccCCeEECCCCCEEEEEEc
Confidence            999998887764 33   666664442   222222 11222345778999974 44433

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.68  E-value=8.1e-06  Score=82.33  Aligned_cols=196  Identities=14%  Similarity=0.079  Sum_probs=113.2

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CC-----C-eE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-ED-----G-VE  149 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~-----g-~~  149 (370)
                      ..+.++++++|+.+.++ .++.|+.++  +++..........+. .+++++||+..+......|+.++ .+     | ..
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~  159 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI  159 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE
Confidence            35788999988666655 468999999  666666555555567 89999999754444456788888 56     6 43


Q ss_pred             EEEeecCC----------cccccccceEEcCCCc-EEEEeCCCCCCCcccee-----------c-----ccccCCCceEE
Q 017520          150 NFLSYVNG----------SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCL-----------D-----ILEGKPHGQLL  202 (370)
Q Consensus       150 ~~~~~~~g----------~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~-----------~-----~~~~~~~g~l~  202 (370)
                      .+......          ..+..+..++++|||+ |+++..... ....+..           .     .-.......|+
T Consensus       160 ~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~-~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~  238 (706)
T 2z3z_A          160 AVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQS-MVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG  238 (706)
T ss_dssp             ESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECT-TSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred             EeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCC-CCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence            32211111          0112357899999996 554431000 0000000           0     00011346799


Q ss_pred             EEeCCCCeEEEEecC---CCCccceEEccCCCEEEEEeCC------cEEEEEeCCCCCCceeeec-cCCCC---CCCcee
Q 017520          203 KYDPSSNITTLVADG---FYFANGVALSRDEDYVVVCESW------KCRKYWLKGERKGKLETFA-ENLPG---APDNIN  269 (370)
Q Consensus       203 ~~d~~t~~~~~~~~~---~~~p~gi~~~~dg~~l~v~~~~------~l~~~~~~~~~~~~~~~~~-~~~~g---~p~~i~  269 (370)
                      .+|.++++...+...   ...+..+++++||+.++++...      .|+.+|+.+.+  ....+. .....   ....++
T Consensus       239 ~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~--~~~~~~~~~~~~~~~~~~~~~  316 (706)
T 2z3z_A          239 IYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR--FVRTLFVETDKHYVEPLHPLT  316 (706)
T ss_dssp             EEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC--EEEEEEEEECSSCCCCCSCCE
T ss_pred             EEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc--eeeEEEEccCCCeECccCCce
Confidence            999998876655422   1234678999999988886543      18888876531  122221 11111   235678


Q ss_pred             ECC--CCCEEEE
Q 017520          270 LAP--DGTFWIA  279 (370)
Q Consensus       270 ~d~--~G~lwv~  279 (370)
                      +++  ||++.+.
T Consensus       317 ~sp~~dg~~l~~  328 (706)
T 2z3z_A          317 FLPGSNNQFIWQ  328 (706)
T ss_dssp             ECTTCSSEEEEE
T ss_pred             eecCCCCEEEEE
Confidence            888  8874443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.7e-05  Score=73.90  Aligned_cols=228  Identities=13%  Similarity=0.091  Sum_probs=136.4

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe-CCeE-EEEEecCCCceeceEEcCCCcE-EEEeCCCceEEEc-CCC--eEEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-DGTW-VNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~-~g~~-~~~~~~~~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g--~~~~~  152 (370)
                      ...++++.++|. |++++.+|.|..|+ +++. ..+........ ++++.++|+. +.+...+.+..++ .++  ...+.
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            456788888885 55667889999999 6654 34433445566 9999999974 4455445577777 566  33221


Q ss_pred             eecCCc----------ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCc
Q 017520          153 SYVNGS----------KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFA  221 (370)
Q Consensus       153 ~~~~g~----------~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p  221 (370)
                      ......          ....+..+++.+++.++++.                  .++.|..||..+++..... ......
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG------------------PKGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEEC------------------GGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEc------------------CCCeEEEEEcCCCceeeeeccCCCce
Confidence            110000          00116778888888766664                  3478999998766543332 223345


Q ss_pred             cceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHH
Q 017520          222 NGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHV  300 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~  300 (370)
                      ..++++++++.++.+...+ |..|++...+.  ...+ .........+++.++|.++.+...                  
T Consensus       251 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~-~~~~~~i~~~~~~~~~~l~~~~~d------------------  309 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSASDDGTLRIWHGGNGNS--QNCF-YGHSQSIVSASWVGDDKVISCSMD------------------  309 (425)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEECSSSBSC--SEEE-CCCSSCEEEEEEETTTEEEEEETT------------------
T ss_pred             EEEEECCCCCEEEEEcCCCEEEEEECCCCcc--ceEe-cCCCccEEEEEECCCCEEEEEeCC------------------
Confidence            7799999999888887777 88888765321  2222 123334566888888833333333                  


Q ss_pred             HHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-CC-EEEEEeCCCCeEEEEeC
Q 017520          301 LAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQL  369 (370)
Q Consensus       301 ~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~gs~~~~~i~~~~~  369 (370)
                                       +.+..+|. .++.+..+....+    .++.+... ++ .|+.++. ...|.++++
T Consensus       310 -----------------~~i~i~d~~~~~~~~~~~~~~~----~i~~~~~s~~~~~l~~~~~-dg~i~i~~~  359 (425)
T 1r5m_A          310 -----------------GSVRLWSLKQNTLLALSIVDGV----PIFAGRISQDGQKYAVAFM-DGQVNVYDL  359 (425)
T ss_dssp             -----------------SEEEEEETTTTEEEEEEECTTC----CEEEEEECTTSSEEEEEET-TSCEEEEEC
T ss_pred             -----------------CcEEEEECCCCcEeEecccCCc----cEEEEEEcCCCCEEEEEEC-CCeEEEEEC
Confidence                             35677774 5777777765433    34455443 33 4555544 345555543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.67  E-value=1e-05  Score=74.59  Aligned_cols=169  Identities=11%  Similarity=0.097  Sum_probs=105.6

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeE-EE--E--EecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eE
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VN--W--KFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VE  149 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~-~~--~--~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~  149 (370)
                      -.++++.+++.+.+++.+|.|..|+  +++. ..  .  ....+... ++++.++|+++++....+ |..++ .++  +.
T Consensus        85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~-~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~  163 (344)
T 4gqb_B           85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVS-TVSVLSSGTQAVSGSKDICIKVWDLAQQVVLS  163 (344)
T ss_dssp             EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4568888899999999999999998  4532 11  1  12344567 999999998766544444 55566 566  33


Q ss_pred             EEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec---CCCCccceE
Q 017520          150 NFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGVA  225 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~---~~~~p~gi~  225 (370)
                      .+    .+. ...++.+++.+++ +++++.+                 .++.|..+|..+++......   .......++
T Consensus       164 ~~----~~h-~~~V~~~~~~~~~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  221 (344)
T 4gqb_B          164 SY----RAH-AAQVTCVAASPHKDSVFLSCS-----------------EDNRILLWDTRCPKPASQIGCSAPGYLPTSLA  221 (344)
T ss_dssp             EE----CCC-SSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTSSSCEEECC----CCCEEEEE
T ss_pred             EE----cCc-CCceEEEEecCCCCCceeeec-----------------cccccccccccccceeeeeecceeeccceeee
Confidence            33    221 1367889999988 5766643                 35788999987765443221   122456788


Q ss_pred             EccCCCEEEE-EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          226 LSRDEDYVVV-CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       226 ~~~dg~~l~v-~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      +++++..+++ +...+ |..||+...+.  ...+. ........+++.++|.
T Consensus       222 ~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~-~h~~~v~~v~fsp~g~  270 (344)
T 4gqb_B          222 WHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSA-VHSQCVTGLVFSPHSV  270 (344)
T ss_dssp             ECSSCTTEEEEEETTSEEEEEESCC--C--CEEEE-CCSSCEEEEEECSSSS
T ss_pred             ecCCCCcceEEeccCCcEEEEECCCCcE--EEEEc-CCCCCEEEEEEccCCC
Confidence            9986543554 45555 88898765421  22222 2223345688888884

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.67  E-value=4.2e-05  Score=71.50  Aligned_cols=144  Identities=15%  Similarity=0.139  Sum_probs=93.5

Q ss_pred             cceEEcCCCc-EEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC-eEEEEee
Q 017520           82 EDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSY  154 (370)
Q Consensus        82 ~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g-~~~~~~~  154 (370)
                      .++++.++|. |.+++.+|.|..|+  +++.. .+........ ++++.++|+.+++....+ +..++ .++ .......
T Consensus       127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  205 (393)
T 1erj_A          127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  205 (393)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence            4788888886 44566899999999  55543 3333445567 899999997666544444 55556 566 2222111


Q ss_pred             cCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------CCCCccceE
Q 017520          155 VNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------GFYFANGVA  225 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--------~~~~p~gi~  225 (370)
                       .    ..+..+++.+ +|++.++.+                 .++.|..||..++.......        .......++
T Consensus       206 -~----~~v~~~~~~~~~~~~l~~~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~  263 (393)
T 1erj_A          206 -E----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  263 (393)
T ss_dssp             -S----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             -C----CCcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEE
Confidence             1    2466788888 787766643                 35778889987765433221        122356789


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCC
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ++++++.++.+...+ |..|++..
T Consensus       264 ~~~~g~~l~s~s~d~~v~~wd~~~  287 (393)
T 1erj_A          264 FTRDGQSVVSGSLDRSVKLWNLQN  287 (393)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC--
T ss_pred             ECCCCCEEEEEeCCCEEEEEECCC
Confidence            999999887777777 88888754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.67  E-value=7.6e-06  Score=77.48  Aligned_cols=128  Identities=11%  Similarity=0.023  Sum_probs=82.7

Q ss_pred             CcEEEEecC-----CeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC----------CCceEEEc-CCC--e
Q 017520           90 GVIYTATRD-----GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG--V  148 (370)
Q Consensus        90 G~l~v~~~~-----g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~----------~~gi~~~~-~~g--~  148 (370)
                      ..+|+.+..     +.|..+|  ++++..-...+..|  ++++++||+ |||++.          .+.|..+| .++  .
T Consensus        85 ~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv  162 (426)
T 3c75_H           85 RRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI  162 (426)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE
T ss_pred             CEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE
Confidence            369999843     6899999  67665545555556  899999995 999974          23488888 555  3


Q ss_pred             EEEEeecC-Ccc---cccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC----CC
Q 017520          149 ENFLSYVN-GSK---LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FY  219 (370)
Q Consensus       149 ~~~~~~~~-g~~---~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----~~  219 (370)
                      ..+. . . ..+   ...|..+++++|| ++|+++..                ..+.|.++|.+++++.....-    ..
T Consensus       163 ~~I~-v-~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~  224 (426)
T 3c75_H          163 ADIE-L-PDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHI  224 (426)
T ss_dssp             EEEE-E-TTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEE-C-CCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceee
Confidence            3332 1 1 111   2468899999999 59998642                347899999998876432221    11


Q ss_pred             Cccc----eEEccCCCEEEEEe
Q 017520          220 FANG----VALSRDEDYVVVCE  237 (370)
Q Consensus       220 ~p~g----i~~~~dg~~l~v~~  237 (370)
                      .|.|    +++++||+.+|+..
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEEC
T ss_pred             ccCCCcEEEEEcCCCCEEEEEC
Confidence            1223    45556666555554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.66  E-value=1.6e-06  Score=80.26  Aligned_cols=179  Identities=11%  Similarity=0.058  Sum_probs=102.6

Q ss_pred             CCcceEEcCCCcEEEEe-c------CCeEEEEe--CCeE-----EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-
Q 017520           80 HPEDASMDKNGVIYTAT-R------DGWIKRLQ--DGTW-----VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~------~g~I~~~~--~g~~-----~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-  144 (370)
                      ...++++.+||.+.++. .      +|.|+.++  ++..     ........... ++++.+++.++++...+.|..++ 
T Consensus        44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~l~~s~dg~v~lWd~  122 (357)
T 4g56_B           44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGILVASDSGAVELWEI  122 (357)
T ss_dssp             EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEEEEEETTSCEEEC--
T ss_pred             CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCEEEEECCCEEEEeec
Confidence            35678999999877654 2      67788777  3321     11222333456 89999999988887654455555 


Q ss_pred             CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCc
Q 017520          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFA  221 (370)
Q Consensus       145 ~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p  221 (370)
                      .++  .........+ ....+..+++.++|+..++.+                 .++.|..+|..+++....... ....
T Consensus       123 ~~~~~~~~~~~~~~~-h~~~V~~v~~spdg~~l~sgs-----------------~dg~v~iwd~~~~~~~~~~~~h~~~v  184 (357)
T 4g56_B          123 LEKESLLVNKFAKYE-HDDIVKTLSVFSDGTQAVSGG-----------------KDFSVKVWDLSQKAVLKSYNAHSSEV  184 (357)
T ss_dssp             ------CCCCEEECC-CSSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             cccceeEEEeeccCC-CCCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCE
Confidence            444  1111000111 123578899999998777643                 357899999988876544433 3456


Q ss_pred             cceEEccCCCEEE-EEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEE
Q 017520          222 NGVALSRDEDYVV-VCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWI  278 (370)
Q Consensus       222 ~gi~~~~dg~~l~-v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv  278 (370)
                      +.++++++++.++ .+...+ |..||+...+......+ ......+..+++.+++ ++.+
T Consensus       185 ~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          185 NCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEE
T ss_pred             EEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEE
Confidence            7889999876444 444555 88888765422111111 1122234456777664 4443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.65  E-value=5.2e-06  Score=77.42  Aligned_cols=175  Identities=11%  Similarity=0.073  Sum_probs=111.3

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEE-EEecCCC---------------ceeceEEcCCCcEEEEeCCCce
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQ---------------TLVGLTSTKEGHLIICDNANGL  140 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~-~~~~~~~---------------p~~gl~~d~~G~L~v~~~~~gi  140 (370)
                      ...++++.++|. |++++.+|.|..|+  +++... +......               .. .+.+.+++.++++...+.|
T Consensus       151 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~i  229 (425)
T 1r5m_A          151 PIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGV-DVEWVDDDKFVIPGPKGAI  229 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBS-CCEEEETTEEEEECGGGCE
T ss_pred             cEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceee-EEEEcCCCEEEEEcCCCeE
Confidence            456788888875 66777889999999  555333 2222222               56 8888888888877766667


Q ss_pred             EEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-
Q 017520          141 HKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-  216 (370)
Q Consensus       141 ~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-  216 (370)
                      ..++ .++  ...+...     ...+..++++++|+.+++..                 .++.|..||..+++...... 
T Consensus       230 ~~~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~  287 (425)
T 1r5m_A          230 FVYQITEKTPTGKLIGH-----HGPISVLEFNDTNKLLLSAS-----------------DDGTLRIWHGGNGNSQNCFYG  287 (425)
T ss_dssp             EEEETTCSSCSEEECCC-----SSCEEEEEEETTTTEEEEEE-----------------TTSCEEEECSSSBSCSEEECC
T ss_pred             EEEEcCCCceeeeeccC-----CCceEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCccceEecC
Confidence            7777 555  3333211     13567899999997666543                 34678889877654433322 


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .......+++++++ .++.+...+ |..|++...+  ....+. ........++++++|++.++..
T Consensus       288 ~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~s~~~~~l~~~~  349 (425)
T 1r5m_A          288 HSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNT--LLALSI-VDGVPIFAGRISQDGQKYAVAF  349 (425)
T ss_dssp             CSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTE--EEEEEE-CTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCc--EeEecc-cCCccEEEEEEcCCCCEEEEEE
Confidence            33455788999999 677777766 9999876432  122221 2233456688899997555543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.65  E-value=1.8e-06  Score=84.20  Aligned_cols=190  Identities=11%  Similarity=0.024  Sum_probs=113.4

Q ss_pred             CC-cEEEEe-cCCeEEEEe--CCeEEEEEe--cCCCceeceEE-c-CCC-cEEEEeC-----------------CC-ceE
Q 017520           89 NG-VIYTAT-RDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTS-T-KEG-HLIICDN-----------------AN-GLH  141 (370)
Q Consensus        89 ~G-~l~v~~-~~g~I~~~~--~g~~~~~~~--~~~~p~~gl~~-d-~~G-~L~v~~~-----------------~~-gi~  141 (370)
                      || .+|+.+ .+++|.+++  +.+...+..  ....|+ |+++ + +++ .+|+++.                 .. -+.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            44 699988 677899999  556444323  245689 9998 4 667 4787741                 11 244


Q ss_pred             EEc-CCCeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCC---------Cccce--------eccc-cc--CCCc
Q 017520          142 KVS-EDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYL---------PHEYC--------LDIL-EG--KPHG  199 (370)
Q Consensus       142 ~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~---------~~~~~--------~~~~-~~--~~~g  199 (370)
                      .+| ++. +......-+   ..+..+++++|| .+|+++..++-+         ..++.        .... .+  ..-+
T Consensus       179 vID~~t~-~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~  254 (595)
T 1fwx_A          179 AVDADKW-EVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  254 (595)
T ss_dssp             EEETTTT-EEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEECCCC-eEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence            455 333 111111111   257889999998 488886543221         00110        0000 00  0014


Q ss_pred             eEEEEeCCC--CeE-EEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCC------CCcee-eecc-CCCCCCC
Q 017520          200 QLLKYDPSS--NIT-TLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGER------KGKLE-TFAE-NLPGAPD  266 (370)
Q Consensus       200 ~l~~~d~~t--~~~-~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~------~~~~~-~~~~-~~~g~p~  266 (370)
                      .|-.+|..+  ++. .........|.|+.++|||+++|+++...  |.+||.+..+      +.... .... .....|.
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~  334 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL  334 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred             cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence            588999986  333 22333346899999999999999999776  9999976321      11111 1111 2233699


Q ss_pred             ceeECCCCCEEEEEecC
Q 017520          267 NINLAPDGTFWIAIIKL  283 (370)
Q Consensus       267 ~i~~d~~G~lwv~~~~~  283 (370)
                      .+++|++|++|++..-.
T Consensus       335 h~aF~~dG~aY~t~~ld  351 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLD  351 (595)
T ss_dssp             EEEECTTSEEEEEETTT
T ss_pred             eEEECCCCeEEEEEecC
Confidence            99999999999987543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.64  E-value=1.4e-05  Score=73.57  Aligned_cols=178  Identities=10%  Similarity=0.028  Sum_probs=103.2

Q ss_pred             CcceEEcCCCcEEEEecCC-------eEEEEe---CC----eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-C
Q 017520           81 PEDASMDKNGVIYTATRDG-------WIKRLQ---DG----TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E  145 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g-------~I~~~~---~g----~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~  145 (370)
                      -+++++.+||.+.++..++       .+..++   .+    ............. ++++.+++.|..+..++.|..++ .
T Consensus        33 v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~l~~~s~dg~v~lWd~~  111 (344)
T 4gqb_B           33 LEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVA-DLTWVGERGILVASDSGAVELWELD  111 (344)
T ss_dssp             EEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEE-EEEEETTTEEEEEETTSEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEE-EEEEeCCCeEEEEECCCEEEEEecc
Confidence            4678899999988776443       333333   11    1111111223355 89999998888877655455556 5


Q ss_pred             CC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCcc
Q 017520          146 DG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFAN  222 (370)
Q Consensus       146 ~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~  222 (370)
                      ++  .........+. ...++.+++.++|+..++.+                 .++.|..+|..+++......+ .....
T Consensus       112 ~~~~~~~~~~~~~~H-~~~V~~v~~spdg~~l~sgs-----------------~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B          112 ENETLIVSKFCKYEH-DDIVSTVSVLSSGTQAVSGS-----------------KDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             TTSSCEEEEEEEECC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             CCCceeEeeccccCC-CCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            55  33322111121 13678899999998777643                 357899999988876544443 34457


Q ss_pred             ceEEccCCCEEEEE-eCCc-EEEEEeCCCCCCceeeeccCC-CCCCCceeECCC-CCEEEE
Q 017520          223 GVALSRDEDYVVVC-ESWK-CRKYWLKGERKGKLETFAENL-PGAPDNINLAPD-GTFWIA  279 (370)
Q Consensus       223 gi~~~~dg~~l~v~-~~~~-l~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~~-G~lwv~  279 (370)
                      .+++++++..++++ ...+ |..||+...+.  ...+.... ......+++.++ +++.++
T Consensus       174 ~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~l~s  232 (344)
T 4gqb_B          174 CVAASPHKDSVFLSCSEDNRILLWDTRCPKP--ASQIGCSAPGYLPTSLAWHPQQSEVFVF  232 (344)
T ss_dssp             EEEECSSCTTEEEEEETTSCEEEEETTSSSC--EEECC----CCCEEEEEECSSCTTEEEE
T ss_pred             EEEecCCCCCceeeeccccccccccccccce--eeeeecceeeccceeeeecCCCCcceEE
Confidence            88999988655554 4455 88899765422  12221111 112345666664 455554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.63  E-value=2.1e-06  Score=80.69  Aligned_cols=174  Identities=13%  Similarity=0.093  Sum_probs=102.3

Q ss_pred             EcCCCcEEEEecCCeEEEEe-C---CeEEEEE--ecCCCceeceEEcC--CCcEEEEeCCC----ceEEEcCCC--eEEE
Q 017520           86 MDKNGVIYTATRDGWIKRLQ-D---GTWVNWK--FIDSQTLVGLTSTK--EGHLIICDNAN----GLHKVSEDG--VENF  151 (370)
Q Consensus        86 ~d~~G~l~v~~~~g~I~~~~-~---g~~~~~~--~~~~~p~~gl~~d~--~G~L~v~~~~~----gi~~~~~~g--~~~~  151 (370)
                      .|.+|.||+++..| +++++ +   ..++...  ....... +|++|+  ++.||++....    +|++.+..|  ++.+
T Consensus        19 ~d~~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~-~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~   96 (394)
T 3b7f_A           19 ESGPVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIH-HIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEA   96 (394)
T ss_dssp             CCSCCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEE-EEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEEC
T ss_pred             CCCCCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceE-EEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceEC
Confidence            57789999999765 77777 3   2465542  2233456 899998  78999987654    788887555  5544


Q ss_pred             Eee--cCCc-------ccccccceEEcC---CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--
Q 017520          152 LSY--VNGS-------KLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--  217 (370)
Q Consensus       152 ~~~--~~g~-------~~~~~~~l~~d~---~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--  217 (370)
                      ...  ....       ....+..|++++   .+++|++..                  .++|++.+..+..++.+...  
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~------------------~ggl~~S~DgG~tW~~~~~~~~  158 (394)
T 3b7f_A           97 TRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS------------------PQGLFRSTDHGASWEPVAGFND  158 (394)
T ss_dssp             SBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE------------------TTEEEEESSTTSBCEECHHHHT
T ss_pred             CccccCCCcccccccccccceeEEEeCCCCCCCEEEEEec------------------CCcEEEEcCCCCCeEECcCccC
Confidence            221  1111       112455688885   678999743                  26799987665555554211  


Q ss_pred             ---------------C--CCccceEEcc-CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCC-----C-------CCCC
Q 017520          218 ---------------F--YFANGVALSR-DEDYVVVCESWK-CRKYWLKGERKGKLETFAENL-----P-------GAPD  266 (370)
Q Consensus       218 ---------------~--~~p~gi~~~~-dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~-----~-------g~p~  266 (370)
                                     .  .....|++++ +.+.+|++...+ |++.+-.+.   +.+.+....     +       ....
T Consensus       159 ~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~---tW~~~~~~~~~~~~p~~~~~~g~~~~  235 (394)
T 3b7f_A          159 HPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDAGT---DWKPLNRGCAANFLPDPNVEFGHDPH  235 (394)
T ss_dssp             CTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESSTTS---SCEECCTTCCCTTSSSSSSSSCBCEE
T ss_pred             CccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCCCC---CceECCCCccccccCCCccccCccee
Confidence                           0  0123577886 344588876555 877753332   222221111     1       0123


Q ss_pred             ceeECCC--CCEEEEEec
Q 017520          267 NINLAPD--GTFWIAIIK  282 (370)
Q Consensus       267 ~i~~d~~--G~lwv~~~~  282 (370)
                      .|+++++  +.+|+++..
T Consensus       236 ~i~~~~~~~~~l~vg~~~  253 (394)
T 3b7f_A          236 CVVQHPAAPDILYQQNHC  253 (394)
T ss_dssp             EEEECSSSTTEEEEEETT
T ss_pred             EEEECCCCCCEEEEEcCC
Confidence            4677775  789998754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.63  E-value=7.3e-06  Score=74.10  Aligned_cols=208  Identities=14%  Similarity=0.107  Sum_probs=128.5

Q ss_pred             CcceEEcCCCcEEEEe-c-------------CCeEEEEe-CCe-EEEEEecCCCceeceEEcCC-CcEEEEe---CC-Cc
Q 017520           81 PEDASMDKNGVIYTAT-R-------------DGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKE-GHLIICD---NA-NG  139 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~-~-------------~g~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~-G~L~v~~---~~-~g  139 (370)
                      +..|.++ ++.||... .             .+.|++++ +|. .+.+....     +..+.++ +.||.++   .. ..
T Consensus        57 ~~~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~  130 (302)
T 3s25_A           57 AMYINAD-KNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATS  130 (302)
T ss_dssp             EEEEEEC-SSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEE
T ss_pred             eeeEEEc-CCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCce
Confidence            3445554 45677665 2             24789998 654 33332221     2333334 4688887   22 46


Q ss_pred             eEEEcCCC--eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          140 LHKVSEDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       140 i~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                      |++++.+|  .+.+.... .        .+++++| .||+++.                 ....|++.+.+++..+.+..
T Consensus       131 Iy~~~~dGs~~~~lt~~~-~--------~~~~~~g~~iy~t~~-----------------g~~~Iy~~~l~g~~~~~l~~  184 (302)
T 3s25_A          131 LYRIRIDGEEKKKIKNHY-L--------FTCNTSDRYFYYNNP-----------------KNGQLYRYDTASQSEALFYD  184 (302)
T ss_dssp             EEEEETTSCCCEEEESSC-C--------CCSEEETTEEEEECT-----------------TTCCEEEEETTTTEEEEEEC
T ss_pred             EEEEECCCCCeEEEeCCC-c--------eEeeEECCEEEEEeC-----------------CCceEEEEECCCCCEEEEeC
Confidence            88998666  55554321 1        2335555 7999965                 24689999998877776654


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhh
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILN  292 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~  292 (370)
                      +   +....++|+++.||+++...   |.+.+++|.   ..+.+.+.  ..   ..++.+| .||.+....         
T Consensus       185 ~---~~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~---~~~~Lt~~--~~---~~~~~~g~~Iy~~~~~~---------  244 (302)
T 3s25_A          185 C---NCYKPVVLDDTNVYYMDVNRDNAIVHVNINNP---NPVVLTEA--NI---EHYNVYGSLIFYQRGGD---------  244 (302)
T ss_dssp             S---CEEEEEEEETTEEEEEEGGGTTEEEEECSSSC---CCEECSCS--CE---EEEEEETTEEEEEECSS---------
T ss_pred             C---CccceeeecCCEEEEEEcCCCcEEEEEECCCC---CeEEEeCC--Cc---ceEEECCCEEEEEECCC---------
Confidence            3   22345678999999998754   999999875   23333321  11   2355555 466554332         


Q ss_pred             cchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          293 SSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                                              ...|.+++.+|...+.+....      ...+...++.||........|.++++|
T Consensus       245 ------------------------~~~i~~~~~DG~~r~~l~~~~------~~~i~i~~d~Iy~td~~~~~i~~~~~d  292 (302)
T 3s25_A          245 ------------------------NPALCVVKNDGTGFKELAKGE------FCNINVTSQYVYFTDFVSNKEYCTSTQ  292 (302)
T ss_dssp             ------------------------SCEEEEEETTSCCCEEEEESC------EEEEEECSSEEEEEETTTCCEEEEESS
T ss_pred             ------------------------CcEEEEEECCCCccEEeeCCc------cceEEEeCCEEEEEECCCCeEEEEECC
Confidence                                    146888899987655554322      224556789999999888889998875

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.63  E-value=4.6e-05  Score=71.21  Aligned_cols=185  Identities=11%  Similarity=0.049  Sum_probs=114.0

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe-cC------------------CCceeceEEcCCCcEEEEeCCC
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF-ID------------------SQTLVGLTSTKEGHLIICDNAN  138 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~-~~------------------~~p~~gl~~d~~G~L~v~~~~~  138 (370)
                      ...++++.++|...++..++.+..|+  +|+...... ..                  .... +++++++|+++++....
T Consensus        66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcCC
Confidence            45788999999877665567788888  565332211 10                  1145 78999999866654444


Q ss_pred             c-eEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE
Q 017520          139 G-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (370)
Q Consensus       139 g-i~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~  214 (370)
                      + |..++ .++  ...+    .+. ...+..+++.++|+..++.+                 .++.|..||..+++....
T Consensus       145 ~~i~iwd~~~~~~~~~~----~~h-~~~v~~~~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~  202 (393)
T 1erj_A          145 RLIRIWDIENRKIVMIL----QGH-EQDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLT  202 (393)
T ss_dssp             SCEEEEETTTTEEEEEE----CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEE
T ss_pred             CeEEEEECCCCcEEEEE----ccC-CCCEEEEEEcCCCCEEEEec-----------------CCCcEEEEECCCCeeEEE
Confidence            4 55566 555  2222    221 13578899999998766643                 357899999988876554


Q ss_pred             ecCCCCccceEEcc-CCCEEEEEeCCc-EEEEEeCCCCCCceeeec------cCCCCCCCceeECCCCCEEEEE-ecCch
Q 017520          215 ADGFYFANGVALSR-DEDYVVVCESWK-CRKYWLKGERKGKLETFA------ENLPGAPDNINLAPDGTFWIAI-IKLDA  285 (370)
Q Consensus       215 ~~~~~~p~gi~~~~-dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~------~~~~g~p~~i~~d~~G~lwv~~-~~~~~  285 (370)
                      .........+++++ +++.+..+...+ |..||+.....  ...+.      .........++++++|.+.++. ..+..
T Consensus       203 ~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v  280 (393)
T 1erj_A          203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV  280 (393)
T ss_dssp             EECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE--EEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence            44444566788998 888777777777 88888764321  11111      0111224457888999765554 34433


Q ss_pred             hHHH
Q 017520          286 RRMK  289 (370)
Q Consensus       286 ~~~~  289 (370)
                      .+++
T Consensus       281 ~~wd  284 (393)
T 1erj_A          281 KLWN  284 (393)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.62  E-value=6.6e-05  Score=67.42  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=96.6

Q ss_pred             CCCcceEEcCCCcE-EEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~  150 (370)
                      ....++++.++|.+ ..++.+|.|..|+  +++. ..+........ .+++.++++++++.... .|..++ .++  ...
T Consensus        14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~   92 (304)
T 2ynn_A           14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence            45678999998864 4566899999999  5543 33333334455 88999999866654444 455566 556  333


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEec-CCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVAD-GFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~-~~~~p~gi~~~~  228 (370)
                      +...     ...++.+++.+++.+.++.+                 .++.|..+|..++ ....... .......++++|
T Consensus        93 ~~~h-----~~~v~~~~~~~~~~~l~sgs-----------------~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p  150 (304)
T 2ynn_A           93 FEAH-----PDYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (304)
T ss_dssp             EECC-----SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECT
T ss_pred             EeCC-----CCcEEEEEEcCCCCEEEEEC-----------------CCCeEEEEECCCCcchhhhhcccCCcEEEEEECC
Confidence            3211     13578899999998777644                 3577888887655 3332232 334457889998


Q ss_pred             -CCCEEEEEeCCc-EEEEEeCC
Q 017520          229 -DEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       229 -dg~~l~v~~~~~-l~~~~~~~  248 (370)
                       +++.++.+...+ |..||+..
T Consensus       151 ~~~~~l~sgs~D~~v~iwd~~~  172 (304)
T 2ynn_A          151 KDPSTFASGCLDRTVKVWSLGQ  172 (304)
T ss_dssp             TCTTEEEEEETTSEEEEEETTC
T ss_pred             CCCCEEEEEeCCCeEEEEECCC
Confidence             567666666666 88888754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.62  E-value=1.1e-05  Score=75.14  Aligned_cols=195  Identities=14%  Similarity=0.108  Sum_probs=111.2

Q ss_pred             CCCcceEEcCCC-cEEEEec--CCeEEEEe--CCeEEEEEecCC----Cceec----eEEcCCCcEEEEeCCCceEEEcC
Q 017520           79 NHPEDASMDKNG-VIYTATR--DGWIKRLQ--DGTWVNWKFIDS----QTLVG----LTSTKEGHLIICDNANGLHKVSE  145 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~~--~g~I~~~~--~g~~~~~~~~~~----~p~~g----l~~d~~G~L~v~~~~~gi~~~~~  145 (370)
                      ..|+.+++++|| .+|+++.  ++.|..+|  ++++..-....+    .|. |    ++..+||.+.+.+..       .
T Consensus       137 ~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~-g~~~~~~~~~DG~~~~v~~~-------~  208 (386)
T 3sjl_D          137 TYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT-APDTFFMHCRDGSLAKVAFG-------T  208 (386)
T ss_dssp             CCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE-ETTEEEEEETTSCEEEEECC-------S
T ss_pred             CCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecC-CCceeEEECCCCCEEEEECC-------C
Confidence            379999999988 5899973  67899999  666443222221    122 1    234445543333322       1


Q ss_pred             CC-eEEEEee-cCCcccccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec------
Q 017520          146 DG-VENFLSY-VNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD------  216 (370)
Q Consensus       146 ~g-~~~~~~~-~~g~~~~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~------  216 (370)
                      .+ +...... .........+..+++ ++|++||...                  .+.|+.+|..++..++...      
T Consensus       209 ~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~------------------~g~V~v~d~~~~~~~v~~~~~~~~~  270 (386)
T 3sjl_D          209 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY------------------TGKIHQIDLSSGDAKFLPAVEALTE  270 (386)
T ss_dssp             SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT------------------TSEEEEEECTTSSCEECCCEESSCH
T ss_pred             CCeEEEeecceeccccccccccceeEcCCCcEEEEeC------------------CCEEEEEECCCCcceeecceecccc
Confidence            13 2111110 110001112234554 7887655432                  3789999987665433211      


Q ss_pred             ----CCCCcc---ceEEccCCCEEEEEeC----------Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-E-
Q 017520          217 ----GFYFAN---GVALSRDEDYVVVCES----------WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-F-  276 (370)
Q Consensus       217 ----~~~~p~---gi~~~~dg~~l~v~~~----------~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-l-  276 (370)
                          ....|.   .++++++++.+|++..          .+ |+++|.++.+.-  ..+.  .+..|.++++++||+ + 
T Consensus       271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~--~~i~--vg~~~~~lavs~D~~~~l  346 (386)
T 3sjl_D          271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL--AKFE--MGHEIDSINVSQDEKPLL  346 (386)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE--EEEE--EEEEECEEEECSSSSCEE
T ss_pred             ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE--EEEE--CCCCcceEEECCCCCeEE
Confidence                011233   4888999999999863          23 999998765321  1221  222478999999995 4 


Q ss_pred             EEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCC
Q 017520          277 WIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPT  337 (370)
Q Consensus       277 wv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~  337 (370)
                      |++....                                  +.|..+|. .++++.++....
T Consensus       347 y~tn~~~----------------------------------~~VsViD~~t~k~~~~i~~~~  374 (386)
T 3sjl_D          347 YALSTGD----------------------------------KTLYIHDAESGEELRSVNQLG  374 (386)
T ss_dssp             EEEETTT----------------------------------TEEEEEETTTCCEEEEECCCC
T ss_pred             EEEcCCC----------------------------------CeEEEEECCCCcEEEEecCCC
Confidence            5544332                                  45888885 689999887653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.61  E-value=9.6e-05  Score=66.89  Aligned_cols=181  Identities=13%  Similarity=0.115  Sum_probs=110.3

Q ss_pred             CCcCCCcceEEcCCC--cEEEEecCCeEEEEe-CC---e----EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc
Q 017520           76 GSVNHPEDASMDKNG--VIYTATRDGWIKRLQ-DG---T----WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS  144 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G--~l~v~~~~g~I~~~~-~g---~----~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~  144 (370)
                      |.-....++++.+++  .|..++.++.|..|+ .+   +    ...+........ .+++.++|++.++....+ |..++
T Consensus        15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~dg~~l~s~s~D~~v~~wd   93 (319)
T 3frx_A           15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQ-DCTLTADGAYALSASWDKTLRLWD   93 (319)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEE-EEEECCCCCEEEEEeCCCEEEEEE
Confidence            433345678887644  466777899999888 21   1    223333444566 899999998766544444 55555


Q ss_pred             -CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520          145 -EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (370)
Q Consensus       145 -~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p  221 (370)
                       .++  ...+...     ...+..++++++|.+.++.+                 .++.|..||.++.....+.......
T Consensus        94 ~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~s-----------------~D~~i~vwd~~~~~~~~~~~h~~~v  151 (319)
T 3frx_A           94 VATGETYQRFVGH-----KSDVMSVDIDKKASMIISGS-----------------RDKTIKVWTIKGQCLATLLGHNDWV  151 (319)
T ss_dssp             TTTTEEEEEEECC-----SSCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTSCEEEEECCCSSCE
T ss_pred             CCCCCeeEEEccC-----CCcEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCeEEEEeccCCcE
Confidence             566  3333221     13578899999998777754                 3567888888765555444333445


Q ss_pred             cceEEccC------CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          222 NGVALSRD------EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       222 ~gi~~~~d------g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..+.+.+.      +..++.+...+ |..|++...+  ....+. ...+....++++++|++.++...
T Consensus       152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~  216 (319)
T 3frx_A          152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--IEADFI-GHNSNINTLTASPDGTLIASAGK  216 (319)
T ss_dssp             EEEEECCC------CCEEEEEETTSCEEEEETTTTE--EEEEEC-CCCSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch--hheeec-CCCCcEEEEEEcCCCCEEEEEeC
Confidence            56777663      44566666666 8888875431  111222 22333556788999986665443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.61  E-value=0.00021  Score=64.07  Aligned_cols=148  Identities=15%  Similarity=0.100  Sum_probs=99.0

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~  150 (370)
                      ....++++.++|+ |.+++.+|.|..|+  +++ ...+........ .+.+.++++++++... +.|..++ +++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            3456788988886 44566899999999  554 344444445566 8999999986665434 4566666 555  333


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cC-CCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~-~~~p~gi~~~~  228 (370)
                      +...     ...+..++++++|++.++.+                 .++.|..||..+++..... .. ......+++++
T Consensus       145 ~~~~-----~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          145 LPAH-----SDPVSAVHFNRDGSLIVSSS-----------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             ECCC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             ecCC-----CCcEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            3111     13567889999998766643                 3578899998776543322 22 22345689999


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCC
Q 017520          229 DEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      +++.++.+...+ |..||+...
T Consensus       203 ~~~~l~~~~~d~~i~iwd~~~~  224 (312)
T 4ery_A          203 NGKYILAATLDNTLKLWDYSKG  224 (312)
T ss_dssp             TSSEEEEEETTTEEEEEETTTT
T ss_pred             CCCEEEEEcCCCeEEEEECCCC
Confidence            999888887777 888987643

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.60  E-value=6.1e-05  Score=73.98  Aligned_cols=227  Identities=11%  Similarity=0.094  Sum_probs=137.3

Q ss_pred             CcceEEcC--CCc-EEEEecCCeEEEEe--CC------eE---EEEEecCCCceeceEEcCCCcEEEEeCCC----ceEE
Q 017520           81 PEDASMDK--NGV-IYTATRDGWIKRLQ--DG------TW---VNWKFIDSQTLVGLTSTKEGHLIICDNAN----GLHK  142 (370)
Q Consensus        81 P~~i~~d~--~G~-l~v~~~~g~I~~~~--~g------~~---~~~~~~~~~p~~gl~~d~~G~L~v~~~~~----gi~~  142 (370)
                      ..++++.+  +|. |.+++.+|.|..|+  ++      +.   ..+........ +++++++|+.+++....    +.+.
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            57889999  886 45566899999998  44      22   22222344566 89999999865543332    3333


Q ss_pred             EcCCC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC
Q 017520          143 VSEDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY  219 (370)
Q Consensus       143 ~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~  219 (370)
                      +...+  ...+    .+. ...+..+++.++|. +.++.+                 .++.|..||..+++.........
T Consensus       146 ~~d~~~~~~~~----~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          146 SWDSGNSLGEV----SGH-SQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             ETTTCCEEEEC----CSC-SSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSSS
T ss_pred             EEECCCcceee----ecC-CccEEEEEECCCCCcEEEEEe-----------------CCCcEEEEeCCCcceeeeecccC
Confidence            33344  3322    111 23578899999996 555533                 35789999988776554444332


Q ss_pred             ----CccceEEccC-CCEEEEEeCCc-EEEEEeCCCCCCceeeecc---CCCCCCCceeECCCCCEEEEEecCchhHHHh
Q 017520          220 ----FANGVALSRD-EDYVVVCESWK-CRKYWLKGERKGKLETFAE---NLPGAPDNINLAPDGTFWIAIIKLDARRMKI  290 (370)
Q Consensus       220 ----~p~gi~~~~d-g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~---~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~  290 (370)
                          ....++++++ ++.++.+...+ |..|++...+  ....+..   ...+....+++. +|++.++....       
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d-------  273 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD-------  273 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT-------
T ss_pred             CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCC-------
Confidence                4578999999 99888777777 9999976532  1222211   223335567888 88766665432       


Q ss_pred             hhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEEe
Q 017520          291 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~  368 (370)
                                                 +.+..+|. .++.+..+..........+..+.. .++.+..++..+ .|..++
T Consensus       274 ---------------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~i~~~d  325 (615)
T 1pgu_A          274 ---------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG-TLNFYE  325 (615)
T ss_dssp             ---------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTS-CEEEEE
T ss_pred             ---------------------------CcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCC-CEEEEE
Confidence                                       34677774 478888877653332333444433 445666666543 344443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.60  E-value=5.8e-06  Score=83.84  Aligned_cols=135  Identities=10%  Similarity=0.023  Sum_probs=86.6

Q ss_pred             CCcceEEcCCCc-EEEEec-CC-----eEEEEe--CCeEEEEEecC-C------------------------CceeceEE
Q 017520           80 HPEDASMDKNGV-IYTATR-DG-----WIKRLQ--DGTWVNWKFID-S------------------------QTLVGLTS  125 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~-~g-----~I~~~~--~g~~~~~~~~~-~------------------------~p~~gl~~  125 (370)
                      .+.++++.+||. |+++.. +|     .|+.++  +|+........ .                        ... ++++
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~  116 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQW  116 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCEE
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeEE
Confidence            577899999996 666665 66     799999  66655444321 1                        145 8999


Q ss_pred             cCCCcEEEEeCCCceEEEc-CCCe--EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceE
Q 017520          126 TKEGHLIICDNANGLHKVS-EDGV--ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       126 d~~G~L~v~~~~~gi~~~~-~~g~--~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                      ++||+..+......|+.++ .++.  ... . .... ...+..++++|||+ |.++.                   .+.|
T Consensus       117 SpDg~~l~~~~~~~i~~~d~~~~~~~~~~-~-l~~~-~~~~~~~~~SPDG~~la~~~-------------------~~~i  174 (741)
T 2ecf_A          117 SPDAQRLLFPLGGELYLYDLKQEGKAAVR-Q-LTHG-EGFATDAKLSPKGGFVSFIR-------------------GRNL  174 (741)
T ss_dssp             CTTSSEEEEEETTEEEEEESSSCSTTSCC-B-CCCS-SSCEEEEEECTTSSEEEEEE-------------------TTEE
T ss_pred             CCCCCEEEEEeCCcEEEEECCCCCcceEE-E-cccC-CcccccccCCCCCCEEEEEe-------------------CCcE
Confidence            9999744433345677777 3331  110 0 0111 13467889999997 54442                   2479


Q ss_pred             EEEeCCCCeEEEEecCCCC-----------------ccceEEccCCCEEEEEe
Q 017520          202 LKYDPSSNITTLVADGFYF-----------------ANGVALSRDEDYVVVCE  237 (370)
Q Consensus       202 ~~~d~~t~~~~~~~~~~~~-----------------p~gi~~~~dg~~l~v~~  237 (370)
                      +.+|.++++...+......                 +.+++++|||+.|+++.
T Consensus       175 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          175 WVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             EEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             EEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            9999988776655432221                 47799999999888774

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.60  E-value=2.6e-05  Score=79.63  Aligned_cols=178  Identities=10%  Similarity=0.064  Sum_probs=112.4

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g--~~~  150 (370)
                      ....++++.++|. |.+++.+|.|..|+  +++. ..+....+... +++++++|+.+++ ...+.|..++ .++  ...
T Consensus        14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~   92 (814)
T 3mkq_A           14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD   92 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            4577899999886 55666889999999  5653 44444455566 9999999985554 4334466666 566  333


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEe-cCCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVA-DGFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~-~~~~~p~gi~~~~  228 (370)
                      +...     ...+..+++.++|...++.+                 .++.|..||.+++ ...... ........+++++
T Consensus        93 ~~~~-----~~~v~~~~~s~~~~~l~~~~-----------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p  150 (814)
T 3mkq_A           93 FEAH-----PDYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNP  150 (814)
T ss_dssp             EECC-----SSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEET
T ss_pred             EecC-----CCCEEEEEEeCCCCEEEEEc-----------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEc
Confidence            3211     13577899999997555432                 3478888887765 333332 3334467889999


Q ss_pred             -CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC--CCCEEEEEe
Q 017520          229 -DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP--DGTFWIAII  281 (370)
Q Consensus       229 -dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~--~G~lwv~~~  281 (370)
                       +++.++.+...+ |..|++.+...  ...+..........+++.+  +|++.++..
T Consensus       151 ~~~~~l~~~~~dg~v~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          151 KDPSTFASGCLDRTVKVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             TEEEEEEEEETTSEEEEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence             777777777777 99998765422  1122212223355677776  777555543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.59  E-value=5e-05  Score=71.45  Aligned_cols=148  Identities=11%  Similarity=0.126  Sum_probs=99.5

Q ss_pred             CCCcceEEcCCCcEE-EEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g--~~~  150 (370)
                      ....++++.+++.+. .++.+|.|..|+  +++. ..+....+... +++++++|+++++.... -|..++ .++  +..
T Consensus       109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~  187 (410)
T 1vyh_C          109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT  187 (410)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE
Confidence            356678899887654 556899999999  5653 34444445567 89999999876654444 455555 444  222


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~d  229 (370)
                      +    .+. ...+..+++.++|+..++.+                 .++.|..||..++...... ........+.++++
T Consensus       188 ~----~~h-~~~V~~v~~~p~~~~l~s~s-----------------~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~  245 (410)
T 1vyh_C          188 M----HGH-DHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD  245 (410)
T ss_dssp             C----CCC-SSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred             E----cCC-CCCEEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC
Confidence            2    221 13678899999998776643                 4578999998877654333 33334567889999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCC
Q 017520          230 EDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ++.++.+...+ |..|++...
T Consensus       246 g~~l~s~s~D~~v~vwd~~~~  266 (410)
T 1vyh_C          246 GTLIASCSNDQTVRVWVVATK  266 (410)
T ss_dssp             SSEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEECCCC
Confidence            99777777777 888887543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.58  E-value=1.5e-05  Score=73.80  Aligned_cols=182  Identities=8%  Similarity=-0.021  Sum_probs=116.3

Q ss_pred             CCCcceEEcCCC--cEEEEecCCeEEEEe--CCeEEEEEe---cCCCceeceEEcC-CCcEEE-EeCCCceEEEc-CCC-
Q 017520           79 NHPEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTK-EGHLII-CDNANGLHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G--~l~v~~~~g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~-~G~L~v-~~~~~gi~~~~-~~g-  147 (370)
                      ....++++.++|  .|.+++.+|.|..|+  +++......   ..+... ++++.+ ++++++ +..++.|..++ .+. 
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            456778899887  566777899999999  454443332   344566 899998 556555 44444455566 433 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEc
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALS  227 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~  227 (370)
                      ...+... .+ ....+..+++.++|+..++.+                 .++.|..||........+.........++++
T Consensus       153 ~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          153 IQVFAKT-DS-WDYWYCCVDVSVSRQMLATGD-----------------STGRLLLLGLDGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEEEECC-CC-SSCCEEEEEEETTTTEEEEEE-----------------TTSEEEEEETTSCEEEEEECSSSCEEEEEEC
T ss_pred             eEEEecc-CC-CCCCeEEEEECCCCCEEEEEC-----------------CCCCEEEEECCCCEEEEeccCCCcEEEEEEC
Confidence            4444322 11 113577899999998666643                 3578999998755555555445567889999


Q ss_pred             cCCC-EEEEEeCCc-EEEEEeCCCCC-CceeeeccCCCCCCCceeECC-CCCEEEEEe
Q 017520          228 RDED-YVVVCESWK-CRKYWLKGERK-GKLETFAENLPGAPDNINLAP-DGTFWIAII  281 (370)
Q Consensus       228 ~dg~-~l~v~~~~~-l~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~  281 (370)
                      ++++ .++.+...+ |..||+...+. +...... ...+....+++++ +|++.++..
T Consensus       214 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          214 PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTD  270 (383)
T ss_dssp             SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEc
Confidence            9998 677777777 99999875321 1221111 2333456788899 887655543

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=98.58  E-value=3.6e-07  Score=88.20  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             CcccccccceEEcCCCcEEE-EeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEE
Q 017520          157 GSKLRFANDVVEASDGSLYF-TVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYV  233 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v-~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l  233 (370)
                      +.++++|++|++|++|+||| +|.+  ++..    ...+...+..|+++++++++++.++..  ...|+|++++||++.|
T Consensus       472 ~~~fnsPDnL~fd~~G~LWf~TD~~--~~~~----g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktL  545 (592)
T 4a9v_A          472 QNMFNSPDGLGFDKAGRLWILTDGD--SSNA----GDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTL  545 (592)
T ss_dssp             TTCCCCEEEEEECTTCCEEEEECCC--CCCS----GGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEE
T ss_pred             cCccCCCCceEECCCCCEEEEeCCC--cCcc----ccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEE
Confidence            34688999999999999999 7764  2211    112233556899999998999887754  4678999999999999


Q ss_pred             EEEeC
Q 017520          234 VVCES  238 (370)
Q Consensus       234 ~v~~~  238 (370)
                      ||+-.
T Consensus       546 fV~vQ  550 (592)
T 4a9v_A          546 FVGIQ  550 (592)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.58  E-value=3.3e-05  Score=72.03  Aligned_cols=233  Identities=9%  Similarity=0.034  Sum_probs=135.2

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe-CC------eEEEEEecCCCceeceEEcCC-CcEEEEeCCC-ceEEEc-CCCe
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-DG------TWVNWKFIDSQTLVGLTSTKE-GHLIICDNAN-GLHKVS-EDGV  148 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~-~g------~~~~~~~~~~~p~~gl~~d~~-G~L~v~~~~~-gi~~~~-~~g~  148 (370)
                      ...++++.++|. |.+++.+|.|..|+ ..      ....+........ .+++.++ ++++++.... .|..++ .++.
T Consensus        69 ~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  147 (416)
T 2pm9_A           69 KFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKCT  147 (416)
T ss_dssp             CEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred             ceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence            456788888775 55667889999998 32      2333333445566 8999987 6665554444 455555 3332


Q ss_pred             ------EEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC----
Q 017520          149 ------ENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (370)
Q Consensus       149 ------~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----  217 (370)
                            ..+...........+..+++.++ ++++++..                 .++.|..||..+++.......    
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~~  210 (416)
T 2pm9_A          148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-----------------SSNFASIWDLKAKKEVIHLSYTSPN  210 (416)
T ss_dssp             SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-----------------SSSCEEEEETTTTEEEEEECCCCCS
T ss_pred             cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-----------------CCCCEEEEECCCCCcceEEeccccc
Confidence                  21111000111246788999998 57776643                 357899999887765444332    


Q ss_pred             ---CCCccceEEccCC-CEEEEEeCC----cEEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEEEEEecCchhHH
Q 017520          218 ---FYFANGVALSRDE-DYVVVCESW----KCRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFWIAIIKLDARRM  288 (370)
Q Consensus       218 ---~~~p~gi~~~~dg-~~l~v~~~~----~l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~~~~~~~~  288 (370)
                         ......+++++++ ..++.+...    .|..|++..... ....+..........+++++ +|++.++....     
T Consensus       211 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-----  284 (416)
T 2pm9_A          211 SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD-----  284 (416)
T ss_dssp             SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESS-----
T ss_pred             cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCC-----
Confidence               3446789999997 456655554    488888765311 11111101223355678887 77655554432     


Q ss_pred             HhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CC-EEEEEeCCCCeEE
Q 017520          289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIG  365 (370)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~gs~~~~~i~  365 (370)
                                                   +.+..+| ..++.+..+....+    .++.+... ++ .+++..-....|.
T Consensus       285 -----------------------------g~v~~wd~~~~~~~~~~~~~~~----~v~~~~~s~~~~~~l~s~~~d~~i~  331 (416)
T 2pm9_A          285 -----------------------------NTVLLWNPESAEQLSQFPARGN----WCFKTKFAPEAPDLFACASFDNKIE  331 (416)
T ss_dssp             -----------------------------SEEEEECSSSCCEEEEEECSSS----CCCCEEECTTCTTEEEECCSSSEEE
T ss_pred             -----------------------------CCEEEeeCCCCccceeecCCCC----ceEEEEECCCCCCEEEEEecCCcEE
Confidence                                         3567777 45777777765443    34444444 23 4444444455565


Q ss_pred             EEeC
Q 017520          366 KVQL  369 (370)
Q Consensus       366 ~~~~  369 (370)
                      +.++
T Consensus       332 iw~~  335 (416)
T 2pm9_A          332 VQTL  335 (416)
T ss_dssp             EEES
T ss_pred             EEEc
Confidence            5554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.57  E-value=3.1e-05  Score=76.06  Aligned_cols=184  Identities=14%  Similarity=0.034  Sum_probs=109.0

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CC----e-EEEEEecCCC-ceeceEEcC--CCcEEEEeCCCc-eEEEc-CC
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG----T-WVNWKFIDSQ-TLVGLTSTK--EGHLIICDNANG-LHKVS-ED  146 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g----~-~~~~~~~~~~-p~~gl~~d~--~G~L~v~~~~~g-i~~~~-~~  146 (370)
                      ..+.+++++++|++.+...++.|..++  ++    + ...+...... +. ++++++  +|+++++....| |..++ .+
T Consensus        19 ~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~-~~~~sp~~~~~~l~s~~~dg~v~vw~~~~   97 (615)
T 1pgu_A           19 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTF   97 (615)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred             CceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEE-EEEECcCCCCCEEEEecCCCEEEEEeCCC
Confidence            467889999999766555578899998  55    3 4444444555 67 999999  998666543444 44444 22


Q ss_pred             C------eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCC
Q 017520          147 G------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF  220 (370)
Q Consensus       147 g------~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~  220 (370)
                      +      .........+. ...+..++++++|+..++....             ....+.|+.+|.. .....+......
T Consensus        98 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~~-------------~~~~~~v~~~d~~-~~~~~~~~~~~~  162 (615)
T 1pgu_A           98 DKESNSVEVNVKSEFQVL-AGPISDISWDFEGRRLCVVGEG-------------RDNFGVFISWDSG-NSLGEVSGHSQR  162 (615)
T ss_dssp             EGGGTEEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEECC-------------SSCSEEEEETTTC-CEEEECCSCSSC
T ss_pred             Ccccccccccccchhhcc-cccEEEEEEeCCCCEEEEeccC-------------CCCccEEEEEECC-CcceeeecCCcc
Confidence            1      11111111111 2357889999999866654320             0123578888732 344444333445


Q ss_pred             ccceEEccCCC-EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCC---CCCceeECCC-CCEEEEEe
Q 017520          221 ANGVALSRDED-YVVVCESWK-CRKYWLKGERKGKLETFAENLPG---APDNINLAPD-GTFWIAII  281 (370)
Q Consensus       221 p~gi~~~~dg~-~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~d~~-G~lwv~~~  281 (370)
                      ...++++++++ .++.+...+ |..|++...+  ....+. ...+   ....++++++ |++.++..
T Consensus       163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--FSASDR-THHKQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBE--EEEEEC-SSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred             EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--eeeeec-ccCCCCceEEEEEECCCCCCEEEEEe
Confidence            67899999997 566666666 8888865421  112221 2222   3456788998 87655543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.57  E-value=6e-06  Score=83.75  Aligned_cols=195  Identities=10%  Similarity=0.033  Sum_probs=110.0

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CC---eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEe
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DG---TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g---~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~  153 (370)
                      ..++++++||+..+...++.|+.++  ++   +...+......+. .+++++||+..+......|+.++ .+| ...+..
T Consensus       111 v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~~~  189 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIRGRNLWVIDLASGRQMQLTA  189 (741)
T ss_dssp             SCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEETTEEEEEETTTTEEEECCC
T ss_pred             cceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEeCCcEEEEecCCCCEEEecc
Confidence            4678999999744433358999999  55   5554444445567 89999999844433345788888 556 433322


Q ss_pred             ecCCc------------ccccccceEEcCCCc-EEEEeCCCCCCCccc-----------eecc-----cccCCCceEEEE
Q 017520          154 YVNGS------------KLRFANDVVEASDGS-LYFTVSSSKYLPHEY-----------CLDI-----LEGKPHGQLLKY  204 (370)
Q Consensus       154 ~~~g~------------~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~-----------~~~~-----~~~~~~g~l~~~  204 (370)
                      .....            .+..+..++++|||+ |+++..... ....+           ...+     -+......|+.+
T Consensus       190 ~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          190 DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            11100            011257799999996 666532100 00000           0000     000112278889


Q ss_pred             eCCC-CeEEEEecC---CCCccceEEccCCCEEEEEeC--C---c-EEEEEeCCCCCCceeeeccCCCC---CCCceeEC
Q 017520          205 DPSS-NITTLVADG---FYFANGVALSRDEDYVVVCES--W---K-CRKYWLKGERKGKLETFAENLPG---APDNINLA  271 (370)
Q Consensus       205 d~~t-~~~~~~~~~---~~~p~gi~~~~dg~~l~v~~~--~---~-l~~~~~~~~~~~~~~~~~~~~~g---~p~~i~~d  271 (370)
                      |.++ ++...+...   ......+++ +||+.|+++..  .   . |+.+|+++.+.  ...+.....+   ....++++
T Consensus       269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECSSCCCCCSCCEEC
T ss_pred             ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCCCcCCcCCceEEC
Confidence            9887 776554322   234567899 99998887754  1   2 88888765422  1111111111   23578889


Q ss_pred             CCCCEEEEE
Q 017520          272 PDGTFWIAI  280 (370)
Q Consensus       272 ~~G~lwv~~  280 (370)
                      +||++++..
T Consensus       346 pdg~~~~~~  354 (741)
T 2ecf_A          346 DDGSILWSS  354 (741)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCeEEEEe
Confidence            999855544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.56  E-value=9.4e-06  Score=76.04  Aligned_cols=148  Identities=11%  Similarity=-0.012  Sum_probs=93.9

Q ss_pred             CCcceEEcCCC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-eEEEEe
Q 017520           80 HPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-~~~~~~  153 (370)
                      ...+++++++| .|++++.+|.|..++  +++............ ..++.++|+++++... +.|..++ .++ ..... 
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTA-VDTAKLQMRRFILGTTEGDIKVLDSNFNLQREID-  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEE-EEEECSSSCEEEEEETTSCEEEECTTSCEEEEET-
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceE-EEEEecCCCEEEEEECCCCEEEEeCCCcceeeec-
Confidence            34578999876 577888899999998  322211111111122 3466788876554434 4466666 455 32221 


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCCCCccceEEccCCCE
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGFYFANGVALSRDEDY  232 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~~~p~gi~~~~dg~~  232 (370)
                        .+. ...+..+++.++|++.++.+                 .++.|..||..+++.. .+.........++++++++.
T Consensus       136 --~~h-~~~v~~~~~~~~~~~l~s~s-----------------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          136 --QAH-VSEITKLKFFPSGEALISSS-----------------QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN  195 (420)
T ss_dssp             --TSS-SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTE
T ss_pred             --ccc-cCccEEEEECCCCCEEEEEe-----------------CCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCE
Confidence              111 24678899999998666643                 3578999998766543 33333445678999999998


Q ss_pred             EEEEeCCc-EEEEEeCCC
Q 017520          233 VVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~  249 (370)
                      ++.+...+ |..||+...
T Consensus       196 l~s~~~d~~v~iwd~~~~  213 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTG  213 (420)
T ss_dssp             EEEEETTSCEEEEETTTT
T ss_pred             EEEEcCCCcEEEeECCCC
Confidence            88777777 888987643

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.56  E-value=0.0002  Score=66.80  Aligned_cols=168  Identities=9%  Similarity=-0.030  Sum_probs=104.1

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEec--CCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEEeec
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYV  155 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~--~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~~~~  155 (370)
                      +..++ +.+.++..+|.|+.|+  +++.......  ..... ++++.++|++++ +...+.|..++ .++  ...+.   
T Consensus        99 ~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  173 (401)
T 4aez_A           99 LDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVA-SVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA---  173 (401)
T ss_dssp             EEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC---
T ss_pred             EeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEE-EEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec---
Confidence            45544 5688888899999999  6665544333  34566 899999997555 44444466666 555  33332   


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-C-eEEEEecCCCCccceEEccCCCEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-N-ITTLVADGFYFANGVALSRDEDYV  233 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~-~~~~~~~~~~~p~gi~~~~dg~~l  233 (370)
                       +. ...+..++++  +++.++.+                 .++.|..+|..+ + ....+.........++++++++.+
T Consensus       174 -~~-~~~v~~~~~~--~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  232 (401)
T 4aez_A          174 -GH-QARVGCLSWN--RHVLSSGS-----------------RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQL  232 (401)
T ss_dssp             -CC-SSCEEEEEEE--TTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             -CC-CCceEEEEEC--CCEEEEEc-----------------CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEE
Confidence             11 1345667773  45444432                 357888999863 2 233333344456789999999988


Q ss_pred             EEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          234 VVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                      +.+...+ |..||+...+  ....+. ........+++.++|. +.++.
T Consensus       233 ~s~~~d~~v~iwd~~~~~--~~~~~~-~~~~~v~~~~~~p~~~~ll~~~  278 (401)
T 4aez_A          233 ASGGNDNVVQIWDARSSI--PKFTKT-NHNAAVKAVAWCPWQSNLLATG  278 (401)
T ss_dssp             EEEETTSCEEEEETTCSS--EEEEEC-CCSSCCCEEEECTTSTTEEEEE
T ss_pred             EEEeCCCeEEEccCCCCC--ccEEec-CCcceEEEEEECCCCCCEEEEe
Confidence            8887777 9999976531  122222 2334466788888774 55543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.55  E-value=0.0002  Score=66.47  Aligned_cols=204  Identities=10%  Similarity=0.053  Sum_probs=104.2

Q ss_pred             CCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CC---
Q 017520           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-ED---  146 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~---  146 (370)
                      |.-..-.++++.++|. |..++.+|.|..|+  +++. ..+........ .++++++|++.++.... .+..++ .+   
T Consensus        64 gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~-~~~~s~~g~~las~~~d~~v~iw~~~~~~~  142 (380)
T 3iz6_a           64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-ECAFAPNGQSVACGGLDSACSIFNLSSQAD  142 (380)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCC-CCEECTTSSEEEECCSSSCCEEEECCCCSS
T ss_pred             ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEE-EEEECCCCCEEEEeeCCCcEEEEECCCCcc
Confidence            4333467788888875 66677999999999  5543 33433444566 88898888876654333 333333 11   


Q ss_pred             --C----eEEEEeec---CCcccc--cccce-EEcCCCcEEEEeCCCCC-----------CCccce----------eccc
Q 017520          147 --G----VENFLSYV---NGSKLR--FANDV-VEASDGSLYFTVSSSKY-----------LPHEYC----------LDIL  193 (370)
Q Consensus       147 --g----~~~~~~~~---~g~~~~--~~~~l-~~d~~G~l~v~d~~~~~-----------~~~~~~----------~~~~  193 (370)
                        +    ...+....   ....+.  ....+ .-+.||.+.+-|....-           +-....          ..+.
T Consensus       143 ~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~  222 (380)
T 3iz6_a          143 RDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI  222 (380)
T ss_dssp             CCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred             ccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence              1    00010000   000000  00112 22345555544321100           000000          0011


Q ss_pred             ccCCCceEEEEeCCC--CeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC------CCCC
Q 017520          194 EGKPHGQLLKYDPSS--NITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN------LPGA  264 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t--~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~------~~g~  264 (370)
                      ....++.|..||...  .....+.......+.++++|+++.++.+...+ |..||+....  ....+...      ....
T Consensus       223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~--~~~~~~~~~~~~~~~~~~  300 (380)
T 3iz6_a          223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH--QLQVYNREPDRNDNELPI  300 (380)
T ss_dssp             EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE--EEEEECCCCSSSCCSSCS
T ss_pred             EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc--EEEEecccccccccccCc
Confidence            223456788888752  22333333334567899999999777766666 8889876531  11122110      1112


Q ss_pred             CCceeECCCCCEEEEEec
Q 017520          265 PDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       265 p~~i~~d~~G~lwv~~~~  282 (370)
                      ...++++++|++.++...
T Consensus       301 v~~~~~s~~g~~l~~g~~  318 (380)
T 3iz6_a          301 VTSVAFSISGRLLFAGYS  318 (380)
T ss_dssp             CSEEEECSSSSEEEEECT
T ss_pred             eEEEEECCCCCEEEEEEC
Confidence            456889999987666543

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.54  E-value=6.4e-05  Score=70.74  Aligned_cols=176  Identities=13%  Similarity=0.129  Sum_probs=110.1

Q ss_pred             CCcceEEcCCCcEE-EEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEE
Q 017520           80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~  151 (370)
                      ...+++++++|.+. .++.+|.|..|+  +++. ..+........ ++++.++|+.+++....+ |..++ .++  +..+
T Consensus       152 ~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            34678888888644 566889999998  4443 33333344566 899999998666544444 55566 566  4443


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccC-
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD-  229 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~d-  229 (370)
                      ...     ...+..+.+.++|++.++.+                 .++.|..||..+++....... ......++++++ 
T Consensus       231 ~~h-----~~~v~~~~~~~~g~~l~s~s-----------------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~  288 (410)
T 1vyh_C          231 TGH-----REWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAPES  288 (410)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             eCC-----CccEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcc
Confidence            221     13567889999998777754                 357788889877665443322 234466777775 


Q ss_pred             -------------------CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          230 -------------------EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       230 -------------------g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                                         +..++.+...+ |..||+....  ....+. ...+....++++++|++.++..
T Consensus       289 ~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~--~~~~~~-~h~~~v~~v~~~~~g~~l~s~s  357 (410)
T 1vyh_C          289 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCA  357 (410)
T ss_dssp             GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEE
T ss_pred             cccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc--eEEEEE-CCCCcEEEEEEcCCCCEEEEEe
Confidence                               56666666666 8889876431  122222 2333456688899997555543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.54  E-value=9.4e-06  Score=75.47  Aligned_cols=240  Identities=7%  Similarity=-0.092  Sum_probs=129.2

Q ss_pred             CcEEEEec-CC----eEEEEe--CCeEEEEEecCCCceeceEEcCCC-cEEEEeC----------CCceEEEc-CCC--e
Q 017520           90 GVIYTATR-DG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEG-HLIICDN----------ANGLHKVS-EDG--V  148 (370)
Q Consensus        90 G~l~v~~~-~g----~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G-~L~v~~~----------~~gi~~~~-~~g--~  148 (370)
                      ..+|+.+. .+    .|..+|  ++++..-...+..|  ++++++|| .+||++.          .+-|..+| .++  .
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv  109 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI  109 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence            57888873 33    788999  66665545555666  79999999 5999973          13488888 566  3


Q ss_pred             EEEEeecCCcc---cccccceEEcCCC-cEEEEeCC-CC------CCCccceec----------------ccccCCCceE
Q 017520          149 ENFLSYVNGSK---LRFANDVVEASDG-SLYFTVSS-SK------YLPHEYCLD----------------ILEGKPHGQL  201 (370)
Q Consensus       149 ~~~~~~~~g~~---~~~~~~l~~d~~G-~l~v~d~~-~~------~~~~~~~~~----------------~~~~~~~g~l  201 (370)
                      ..+. ...+.+   ...|..+++++|| .+|+++.. ..      .+... ...                ......++.+
T Consensus       110 ~~I~-v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~  187 (368)
T 1mda_H          110 ADIE-LPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASL  187 (368)
T ss_dssp             EEEE-ETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSC
T ss_pred             EEEE-CCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCE
Confidence            3332 110111   2468899999999 69999642 11      12211 000                0112234445


Q ss_pred             EEEeCCC-----CeEEEE----ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC------CCCCC
Q 017520          202 LKYDPSS-----NITTLV----ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN------LPGAP  265 (370)
Q Consensus       202 ~~~d~~t-----~~~~~~----~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~------~~g~p  265 (370)
                      ..+|.++     +++...    ..-...|.  + +++++.+|+... + +..+|..+........+.-.      ....|
T Consensus       188 ~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p  263 (368)
T 1mda_H          188 AASDLAAAPAAAGIVGAQCTGAQNCSSQAA--Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS  263 (368)
T ss_dssp             EEEECCSSCCCCEECCCCSCTTSCBCSCCE--E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE
T ss_pred             EEEECccccccCCeEEEEeeeeeeCCCCcc--c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc
Confidence            5555543     221100    00012233  3 555555666555 6 88898754311111111000      00123


Q ss_pred             Cc---eeECCCC-CEEEEEe-c-CchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCCCC
Q 017520          266 DN---INLAPDG-TFWIAII-K-LDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTG  338 (370)
Q Consensus       266 ~~---i~~d~~G-~lwv~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g  338 (370)
                      .+   +++++|| ++|++.. . +.. +                          .. ...+..+|. .++++..+.... 
T Consensus       264 ~g~~~v~~s~dg~~lyV~~~~~~~~~-~--------------------------~~-~~~~~ViD~~t~~vv~~i~vg~-  314 (368)
T 1mda_H          264 AGFQMVAKLKNTDGIMILTVEHSRSC-L--------------------------AA-AENTSSVTASVGQTSGPISNGH-  314 (368)
T ss_dssp             CSSSCEEEETTTTEEEEEEEECSSCT-T--------------------------SC-EEEEEEEESSSCCEEECCEEEE-
T ss_pred             CcceeeEEcCCCCEEEEEeccccCcc-c--------------------------cc-CCCEEEEECCCCeEEEEEECCC-
Confidence            44   7888887 5999876 2 100 0                          00 023558885 467777665422 


Q ss_pred             CccccceeEEE-ECC-EEEEEeC-CCCeEEEEeCC
Q 017520          339 QLMSFVTSGLQ-VDN-HLYVISL-TSNFIGKVQLS  370 (370)
Q Consensus       339 ~~~~~~t~~~~-~~g-~L~~gs~-~~~~i~~~~~~  370 (370)
                          ....+.. .+| ++|+.+. ..+.|.++++.
T Consensus       315 ----~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          315 ----DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             ----EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             ----CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence                2333433 344 5999988 68999999863

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.51  E-value=2.3e-05  Score=70.93  Aligned_cols=177  Identities=10%  Similarity=0.005  Sum_probs=105.8

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCe----EEEEEecCCCceeceEEcCCCc--EEEEeCCCceEEEcC-CC--
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----WVNWKFIDSQTLVGLTSTKEGH--LIICDNANGLHKVSE-DG--  147 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~----~~~~~~~~~~p~~gl~~d~~G~--L~v~~~~~gi~~~~~-~g--  147 (370)
                      ...++++.++|. |++++.+|.|..|+  +++    ............ +++++++|+  |+.+...+.|..++. ..  
T Consensus        13 ~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             cEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            456788888775 66677899999998  454    444444555667 899999998  444554445666664 44  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC---------CeEEEEecCC
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS---------NITTLVADGF  218 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t---------~~~~~~~~~~  218 (370)
                      ...+...   .....+..+++.+ ++.+++.+                 .++.|..||..+         ++........
T Consensus        92 ~~~~~~~---~~~~~v~~l~~~~-~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  150 (342)
T 1yfq_A           92 FQALTNN---EANLGICRICKYG-DDKLIAAS-----------------WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVK  150 (342)
T ss_dssp             EEECBSC---CCCSCEEEEEEET-TTEEEEEE-----------------TTSEEEEECHHHHTTBCEEEEESCSSSSSSC
T ss_pred             eEecccc---CCCCceEEEEeCC-CCEEEEEc-----------------CCCeEEEEcccccccccccccCCeeeEEeeC
Confidence            4322110   0123577889988 76666543                 346788887653         2211111122


Q ss_pred             CCccceEEccCCCEEEEEeCCc-EEEEEeCC-CCCCceeeeccCCCCCCCceeECC-CCCEEEEEe
Q 017520          219 YFANGVALSRDEDYVVVCESWK-CRKYWLKG-ERKGKLETFAENLPGAPDNINLAP-DGTFWIAII  281 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~-~G~lwv~~~  281 (370)
                      ..+..+++++++  ++++...+ |..|++.. .... ..............+++++ +|++.++..
T Consensus       151 ~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~i~~i~~~~~~~~~l~~~~  213 (342)
T 1yfq_A          151 NKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-GTIEESGLKYQIRDVALLPKEQEGYACSS  213 (342)
T ss_dssp             CCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-CEEEECSCSSCEEEEEECSGGGCEEEEEE
T ss_pred             CceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-ceeeecCCCCceeEEEECCCCCCEEEEEe
Confidence            345678888776  77777666 99999875 3221 1111112333456678888 887555543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.50  E-value=2.6e-05  Score=72.90  Aligned_cols=179  Identities=11%  Similarity=-0.019  Sum_probs=111.3

Q ss_pred             CCcceEEcC-CCc-EEEEecCCeEEEEe--CCe--------EEEEEecCCCceeceEEcCCC-cEEEE-eCCCceEEEc-
Q 017520           80 HPEDASMDK-NGV-IYTATRDGWIKRLQ--DGT--------WVNWKFIDSQTLVGLTSTKEG-HLIIC-DNANGLHKVS-  144 (370)
Q Consensus        80 ~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~--------~~~~~~~~~~p~~gl~~d~~G-~L~v~-~~~~gi~~~~-  144 (370)
                      ...++++.+ ++. |.+++.+|.|..|+  ++.        ...+........ ++++.++| +++++ ..++.|..++ 
T Consensus        83 ~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd~  161 (402)
T 2aq5_A           83 PVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWDV  161 (402)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEET
T ss_pred             CEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEEC
Confidence            456788887 665 45666899999999  442        344444555667 89999998 55554 4444566667 


Q ss_pred             CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCC--
Q 017520          145 EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFY--  219 (370)
Q Consensus       145 ~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~--  219 (370)
                      .++  ...+..  .+ ....+..++++++|+.+++.+                 .++.|..||..+++..... ....  
T Consensus       162 ~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~  221 (402)
T 2aq5_A          162 GTGAAVLTLGP--DV-HPDTIYSVDWSRDGALICTSC-----------------RDKRVRVIEPRKGTVVAEKDRPHEGT  221 (402)
T ss_dssp             TTTEEEEEECT--TT-CCSCEEEEEECTTSSCEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCSS
T ss_pred             CCCCccEEEec--CC-CCCceEEEEECCCCCEEEEEe-----------------cCCcEEEEeCCCCceeeeeccCCCCC
Confidence            566  332210  11 123578899999997665543                 3578999999877665443 2322  


Q ss_pred             CccceEEccCCCEEEEE---eCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          220 FANGVALSRDEDYVVVC---ESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~---~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      .+..++++++++.++.+   ...+ |..||+....... .............++++++|++.+.+
T Consensus       222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~  285 (402)
T 2aq5_A          222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPL-SLQELDTSSGVLLPFFDPDTNIVYLC  285 (402)
T ss_dssp             SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCS-EEEECCCCSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCc-eEEeccCCCceeEEEEcCCCCEEEEE
Confidence            25789999999866665   3445 9999986543211 11111122335667889999865433

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.50  E-value=8.1e-05  Score=68.91  Aligned_cols=182  Identities=10%  Similarity=0.013  Sum_probs=107.5

Q ss_pred             CCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCe-------EEEEEecCCCceeceEEcCC----C---cEEEE-eCCC
Q 017520           76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNWKFIDSQTLVGLTSTKE----G---HLIIC-DNAN  138 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-------~~~~~~~~~~p~~gl~~d~~----G---~L~v~-~~~~  138 (370)
                      +.-....++++++ ..|++++.+|.|..|+  +++       ...+........ ++++.++    |   +++++ ...+
T Consensus        14 ~h~~~i~~~~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~g~~~~~l~s~~~dg   91 (397)
T 1sq9_A           14 AHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH-HVDVLQAIERDAFELCLVATTSFSG   91 (397)
T ss_dssp             CSSSCEEEEEECS-SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEE-EEEEEEEEETTTEEEEEEEEEETTS
T ss_pred             hhhcCeEEEEecC-CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEE-EEEEecccccCCccccEEEEEcCCC
Confidence            3334557788887 6788888999999999  444       455554455566 8999988    8   65554 4444


Q ss_pred             ceEEEc-CCC-e--EEEEeecCCcc----cccccceEEc----CCCcE-EEEeCCCCCCCccceecccccCCCceEEEEe
Q 017520          139 GLHKVS-EDG-V--ENFLSYVNGSK----LRFANDVVEA----SDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYD  205 (370)
Q Consensus       139 gi~~~~-~~g-~--~~~~~~~~g~~----~~~~~~l~~d----~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d  205 (370)
                      .|..++ .++ .  ........+..    ...+..+++.    ++|+. +++.+                 .++.|..||
T Consensus        92 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd  154 (397)
T 1sq9_A           92 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD-----------------VKGTTYIWK  154 (397)
T ss_dssp             CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE-----------------TTSCEEEEE
T ss_pred             CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe-----------------CCCcEEEEe
Confidence            466665 333 2  11111112211    2467889999    88976 55533                 246677777


Q ss_pred             CCC------C-eEE-----EEe-------cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccC---C-
Q 017520          206 PSS------N-ITT-----LVA-------DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAEN---L-  261 (370)
Q Consensus       206 ~~t------~-~~~-----~~~-------~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~---~-  261 (370)
                      ..+      + ...     .+.       ........+++++++ .++++...+ |..|++...+  ....+. .   . 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~h~  230 (397)
T 1sq9_A          155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLR--PLYNFE-SQHSMI  230 (397)
T ss_dssp             EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE--EEEEEE-CCC---
T ss_pred             CCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCc--eeEEEe-cccccc
Confidence            654      2 111     221       123456789999999 777777666 9999976431  122222 2   2 


Q ss_pred             --CCCCCceeECCCCCEEEEE
Q 017520          262 --PGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       262 --~g~p~~i~~d~~G~lwv~~  280 (370)
                        ......++++++|++.++.
T Consensus       231 ~~~~~i~~i~~~~~~~~l~~~  251 (397)
T 1sq9_A          231 NNSNSIRSVKFSPQGSLLAIA  251 (397)
T ss_dssp             CCCCCEEEEEECSSTTEEEEE
T ss_pred             ccCCccceEEECCCCCEEEEE
Confidence              3345668889999865554

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=7.9e-05  Score=70.85  Aligned_cols=150  Identities=10%  Similarity=0.048  Sum_probs=96.2

Q ss_pred             CCcceEEcCCCcE--EEEecCCeEEEEe-C---Ce-EEEEE--ecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-
Q 017520           80 HPEDASMDKNGVI--YTATRDGWIKRLQ-D---GT-WVNWK--FIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l--~v~~~~g~I~~~~-~---g~-~~~~~--~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-  147 (370)
                      ...+++++++|..  .+++.+|.|..|+ .   ++ ...+.  .....+. +++++++|. |++++....++.++ .++ 
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~g~v~~~~~~~~~  182 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN-AISIAEDDTTVIIADKFGDVYSIDINSIP  182 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce-EEEEcCCCCEEEEEeCCCcEEEEecCCcc
Confidence            4678899999875  3455789898888 4   33 33332  2345677 999999997 45555445577776 444 


Q ss_pred             eEE-EEeecCCcccccccceEEcCC---CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEe-cCCCCc
Q 017520          148 VEN-FLSYVNGSKLRFANDVVEASD---GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVA-DGFYFA  221 (370)
Q Consensus       148 ~~~-~~~~~~g~~~~~~~~l~~d~~---G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~-~~~~~p  221 (370)
                      ... ......+ ....+..++++++   |++.++.+                 .++.|..||..+++.. .+. ......
T Consensus       183 ~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~-----------------~d~~i~vwd~~~~~~~~~~~~~h~~~v  244 (450)
T 2vdu_B          183 EEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSD-----------------RDEHIKISHYPQCFIVDKWLFGHKHFV  244 (450)
T ss_dssp             CSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEE-----------------TTSCEEEEEESCTTCEEEECCCCSSCE
T ss_pred             cccccceeeec-ccCceEEEEEcCCCCCCcEEEEEc-----------------CCCcEEEEECCCCceeeeeecCCCCce
Confidence            211 0001111 1135778999999   87666643                 3467888887766543 223 223456


Q ss_pred             cceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          222 NGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ..++++ +++.++.+...+ |..||+...
T Consensus       245 ~~~~~s-d~~~l~s~~~d~~v~vwd~~~~  272 (450)
T 2vdu_B          245 SSICCG-KDYLLLSAGGDDKIFAWDWKTG  272 (450)
T ss_dssp             EEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred             EEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence            789999 999888877777 888987654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.48  E-value=5.3e-06  Score=76.60  Aligned_cols=148  Identities=6%  Similarity=-0.064  Sum_probs=89.1

Q ss_pred             CCcceEEcCCCcEEE-EecCCeEEEEe--CCeEEE---EEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCCe--E
Q 017520           80 HPEDASMDKNGVIYT-ATRDGWIKRLQ--DGTWVN---WKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDGV--E  149 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v-~~~~g~I~~~~--~g~~~~---~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g~--~  149 (370)
                      ...++++.++|.+.+ ++.+|.|..|+  ++..+.   +....+... ++++.++|+++++ ..++.|..++ .++.  .
T Consensus        13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~   91 (377)
T 3dwl_C           13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVT-CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWK   91 (377)
T ss_dssp             CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEE-EEEECTTTCCEEEEETTSSEEEC------CCC
T ss_pred             cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEE-EEEEeCCCCEEEEEeCCCeEEEEEcCCCCcee
Confidence            467789999887554 44788888888  553222   222344566 8999999975554 4334455555 3331  1


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe----EEEEec-CCCCccce
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI----TTLVAD-GFYFANGV  224 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~----~~~~~~-~~~~p~gi  224 (370)
                      .... ..+ ....+..+++.++|+..++.+                 .++.|..||.++++    ...+.. .......+
T Consensus        92 ~~~~-~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~  152 (377)
T 3dwl_C           92 QTLV-LLR-LNRAATFVRWSPNEDKFAVGS-----------------GARVISVCYFEQENDWWVSKHLKRPLRSTILSL  152 (377)
T ss_dssp             CEEE-CCC-CSSCEEEEECCTTSSCCEEEE-----------------SSSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred             eeeE-ecc-cCCceEEEEECCCCCEEEEEe-----------------cCCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence            1111 111 123577899999987555532                 34678888877654    333333 33456789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeC
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~  247 (370)
                      +++++++.++.+...+ |..|++.
T Consensus       153 ~~~~~~~~l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          153 DWHPNNVLLAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EECTTSSEEEEEESSSCEEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCEEEEEEEE
Confidence            9999999888777777 8889875

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.47  E-value=6.6e-05  Score=68.78  Aligned_cols=180  Identities=11%  Similarity=0.075  Sum_probs=108.1

Q ss_pred             CcceEEcCCCcEE-EEecCCeEEEEe--CCeEE-E-EE--ecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC-eEE
Q 017520           81 PEDASMDKNGVIY-TATRDGWIKRLQ--DGTWV-N-WK--FIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VEN  150 (370)
Q Consensus        81 P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~-~-~~--~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g-~~~  150 (370)
                      ...+++.++|.+. .+..+|.|..|+  +++.. . ..  ....... +++++++|+++++....+ +..++ ..+ .+.
T Consensus        19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~   97 (345)
T 3fm0_A           19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFEC   97 (345)
T ss_dssp             EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence            3468899988644 566899999998  45432 1 11  1233456 899999998666544444 44454 333 332


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE----EEEecCCCCccceEE
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT----TLVADGFYFANGVAL  226 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~----~~~~~~~~~p~gi~~  226 (370)
                      +.. ..+. ...++.+++.++|++.++.+                 .++.|..+|..++..    ..+.........+++
T Consensus        98 ~~~-~~~h-~~~v~~v~~sp~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           98 VTT-LEGH-ENEVKSVAWAPSGNLLATCS-----------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             EEE-ECCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             EEE-ccCC-CCCceEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence            221 1221 23678899999998777744                 346777777654421    122222334577899


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +++++.+..+...+ |..|+...........+ ....+....++++++|++.++..
T Consensus       159 ~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s  213 (345)
T 3fm0_A          159 HPSQELLASASYDDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCS  213 (345)
T ss_dssp             CSSSSCEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCCCEEEEEeCCCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEEe
Confidence            99999777777777 88888654311111122 12233455688899997655543

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.47  E-value=1.5e-05  Score=75.61  Aligned_cols=182  Identities=10%  Similarity=0.032  Sum_probs=107.8

Q ss_pred             CCcceEEcC-CC-cEEEEecCCeEEEEe--CCeEEEEE---ecCCCceeceEEcC-CCcEEEEeCCCc-eEEEc-CCC-e
Q 017520           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTK-EGHLIICDNANG-LHKVS-EDG-V  148 (370)
Q Consensus        80 ~P~~i~~d~-~G-~l~v~~~~g~I~~~~--~g~~~~~~---~~~~~p~~gl~~d~-~G~L~v~~~~~g-i~~~~-~~g-~  148 (370)
                      .-.+|++.+ ++ .|.+|+.+|.|..|+  .++.....   ...+... +|++.| +++++++....| |..++ +.+ .
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            356788886 44 466888999999999  44332222   2344567 999996 677666544445 55555 444 4


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      +.+... . .....+..++++++|.+.++-.                 .++.|..+|.+++.+..+.......+.+++++
T Consensus       200 ~~~~~~-~-~~~~~~~~~~~~~~~~~l~~g~-----------------~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~p  260 (435)
T 4e54_B          200 RVFASS-D-TINIWFCSLDVSASSRMVVTGD-----------------NVGNVILLNMDGKELWNLRMHKKKVTHVALNP  260 (435)
T ss_dssp             EEEECC-S-SCSCCCCCEEEETTTTEEEEEC-----------------SSSBEEEEESSSCBCCCSBCCSSCEEEEEECT
T ss_pred             eEEecc-C-CCCccEEEEEECCCCCEEEEEe-----------------CCCcEeeeccCcceeEEEecccceEEeeeecC
Confidence            444322 1 1112456789999998776643                 35789999987655443333334457899999


Q ss_pred             CCCEEEEE-eCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          229 DEDYVVVC-ESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       229 dg~~l~v~-~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +++.++++ ...+ |..||+...+.................++++++|++.++..
T Consensus       261 ~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~  315 (435)
T 4e54_B          261 CCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTD  315 (435)
T ss_dssp             TCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEE
T ss_pred             CCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEc
Confidence            98755544 4455 88888765321111010111122234567888887555543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.47  E-value=8.4e-06  Score=87.60  Aligned_cols=180  Identities=11%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFL  152 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~  152 (370)
                      ....+++++++|. +.+++.+|.|..|+  +++............ .+++.+++.++.+...+.+..++ .++  ...+.
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~ 1082 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFT 1082 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEEEEEESSSEEEEEETTTTCCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEECCCcEEEEECCCCceeEEEc
Confidence            3467789998885 55666899999999  666554444444556 88999988888887666677777 566  44432


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDED  231 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~  231 (370)
                      ..     ...+..++++++|+..++.+                 .++.|..||..+++......+ ......+++++|++
T Consensus      1083 ~~-----~~~v~~~~~s~d~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~ 1140 (1249)
T 3sfz_A         1083 CH-----QGTVLSCAISSDATKFSSTS-----------------ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGI 1140 (1249)
T ss_dssp             CC-----SSCCCCEEECSSSSSCEEEC-----------------CSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSS
T ss_pred             cc-----CCcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCC
Confidence            21     13577899999997666643                 346677888765543222222 23356789999999


Q ss_pred             EEEEEeCCc-EEEEEeCCCCC-Cceeee-----ccCCCCCCCceeECCCCCEEEEEe
Q 017520          232 YVVVCESWK-CRKYWLKGERK-GKLETF-----AENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       232 ~l~v~~~~~-l~~~~~~~~~~-~~~~~~-----~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .+..+...+ |..|++.+.+. ......     .....+....++++++|.+.++..
T Consensus      1141 ~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~ 1197 (1249)
T 3sfz_A         1141 LLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG 1197 (1249)
T ss_dssp             EEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES
T ss_pred             EEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC
Confidence            888887777 88899865421 111000     012233467789999998666653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.46  E-value=3.3e-05  Score=70.27  Aligned_cols=177  Identities=8%  Similarity=0.003  Sum_probs=106.0

Q ss_pred             CCcceEEcCC----CcEEEEecCCeEEEEe--CCe--EEEEEecCCCceece------EEcCCCcEEEE-eCCCceEEEc
Q 017520           80 HPEDASMDKN----GVIYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGL------TSTKEGHLIIC-DNANGLHKVS  144 (370)
Q Consensus        80 ~P~~i~~d~~----G~l~v~~~~g~I~~~~--~g~--~~~~~~~~~~p~~gl------~~d~~G~L~v~-~~~~gi~~~~  144 (370)
                      ...++++.++    ..+++++.+|.|..|+  +++  ...+........ ++      +++++++++++ ...+.|..++
T Consensus        67 ~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd  145 (357)
T 3i2n_A           67 PIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVWD  145 (357)
T ss_dssp             CEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEEC
T ss_pred             cEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEEe
Confidence            4566778776    4677788899999999  443  444444444445 66      44678875554 4344566666


Q ss_pred             -CCC---eEEEEeecCCcccccccceE----EcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          145 -EDG---VENFLSYVNGSKLRFANDVV----EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       145 -~~g---~~~~~~~~~g~~~~~~~~l~----~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                       .++   ...+. ...+.....+..++    ++++|++.++..                 .++.|..||..+++......
T Consensus       146 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~  207 (357)
T 3i2n_A          146 PRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQEERVVCAGY-----------------DNGDIKLFDLRNMALRWETN  207 (357)
T ss_dssp             TTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC-CCCEEEEEE-----------------TTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCCCcceecc-ccCCCCCCceEEEEEEeccCCCCCEEEEEc-----------------cCCeEEEEECccCceeeecC
Confidence             443   33332 11222223455666    567887666643                 34789999998887655444


Q ss_pred             CCCCccceEEcc---CCCEEEEEeCCc-EEEEEeCCCCCC-ceeee-ccCCCCCCCceeECCCCC
Q 017520          217 GFYFANGVALSR---DEDYVVVCESWK-CRKYWLKGERKG-KLETF-AENLPGAPDNINLAPDGT  275 (370)
Q Consensus       217 ~~~~p~gi~~~~---dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~-~~~~~g~p~~i~~d~~G~  275 (370)
                      .......+++++   +++.++++...+ |..|++...+.. ..... ..........+++.++|.
T Consensus       208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  272 (357)
T 3i2n_A          208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNR  272 (357)
T ss_dssp             CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEE
T ss_pred             CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCC
Confidence            445667899999   899888887777 888887643211 11100 012233355677888887

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.46  E-value=1.8e-05  Score=73.07  Aligned_cols=173  Identities=11%  Similarity=0.116  Sum_probs=101.9

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEE---EEE--ecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--e
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV---NWK--FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--V  148 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~---~~~--~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~  148 (370)
                      +..++++.+++.+.++..+|.|..|+  +++..   .+.  ...+... ++++.++|+.+++... +.|..++ .++  .
T Consensus        96 ~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~-~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~  174 (357)
T 4g56_B           96 GVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVK-TLSVFSDGTQAVSGGKDFSVKVWDLSQKAVL  174 (357)
T ss_dssp             CEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEE-EEEECCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            34678888999999999999999888  44321   111  2234566 8999999986665444 4466666 556  3


Q ss_pred             EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec---CCCCccce
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFANGV  224 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~---~~~~p~gi  224 (370)
                      ..+    .+. ...++.+++.+++. ++++..                 .++.|..+|..+++......   ....+..+
T Consensus       175 ~~~----~~h-~~~v~~v~~s~~~~~~~~s~~-----------------~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v  232 (357)
T 4g56_B          175 KSY----NAH-SSEVNCVAACPGKDTIFLSCG-----------------EDGRILLWDTRKPKPATRIDFCASDTIPTSV  232 (357)
T ss_dssp             EEE----CCC-SSCEEEEEECTTCSSCEEEEE-----------------TTSCEEECCTTSSSCBCBCCCTTCCSCEEEE
T ss_pred             EEE----cCC-CCCEEEEEEccCCCceeeeec-----------------cCCceEEEECCCCceeeeeeeccccccccch
Confidence            322    111 23577889988874 555533                 34778888887665432221   12235678


Q ss_pred             EEccCCCEEE-EEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEE
Q 017520          225 ALSRDEDYVV-VCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  278 (370)
Q Consensus       225 ~~~~dg~~l~-v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  278 (370)
                      +++|++..++ .+...+ |..||+...+.  ...+. ...+....+++.++|.-++
T Consensus       233 ~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~-~~~~~v~~l~~sp~~~~~l  285 (357)
T 4g56_B          233 TWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSA-VHSQNITGLAYSYHSSPFL  285 (357)
T ss_dssp             EECTTSTTEEEEEESSSCEEEEESSCGGG--CEEEC-CCSSCEEEEEECSSSSCCE
T ss_pred             hhhhcccceEEEeecccceeEEECCCCcE--eEEEe-ccceeEEEEEEcCCCCCEE
Confidence            9999854344 445555 99999765422  22221 2222345678888874333

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.46  E-value=6e-05  Score=69.71  Aligned_cols=190  Identities=14%  Similarity=0.157  Sum_probs=107.2

Q ss_pred             eEEcCCCc-EEEEec-CC--eEEEEe--CCeEEEEEecCC-CceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEe
Q 017520           84 ASMDKNGV-IYTATR-DG--WIKRLQ--DGTWVNWKFIDS-QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLS  153 (370)
Q Consensus        84 i~~d~~G~-l~v~~~-~g--~I~~~~--~g~~~~~~~~~~-~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~  153 (370)
                      .++.+||+ |++... +|  .|+.++  +|+......... ... ++++++||+ |+.+.....++.++ .+| .+.+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            46788886 555553 55  499998  566655443332 234 678999996 66666556788898 566 444433


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCC--CCCCC-ccc--eecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSS--SKYLP-HEY--CLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~--~~~~~-~~~--~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      ...+  .........+++|+..++...  ..+.. ..+  +...........|+++|.++++.+.+.........++++|
T Consensus       120 ~~~~--~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          120 VPAE--WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             CCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             chhh--cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            2111  011112345788887664210  00000 000  0011122345789999999888877765555567899999


Q ss_pred             -CCCEEEEEeCC-------cEEEEEeCCCCCCceeeeccCCCC-CCCceeECCCCC-EEEE
Q 017520          229 -DEDYVVVCESW-------KCRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-FWIA  279 (370)
Q Consensus       229 -dg~~l~v~~~~-------~l~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwv~  279 (370)
                       ||+.++++...       .|+.++.++..   ...+.....+ .....++++||+ |+..
T Consensus       198 ~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~  255 (388)
T 3pe7_A          198 YDDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYV  255 (388)
T ss_dssp             TEEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred             CCCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCCEEEEE
Confidence             99877665532       28888876542   2222211111 122457899996 5333

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.46  E-value=1.3e-05  Score=78.93  Aligned_cols=175  Identities=13%  Similarity=0.037  Sum_probs=102.8

Q ss_pred             cceEEcCCCcEEEEec---CC--eEEEEe---CCeEEEEEecCCCceeceEEcCCC--cEEEEeCCCceEEEc-CCC-eE
Q 017520           82 EDASMDKNGVIYTATR---DG--WIKRLQ---DGTWVNWKFIDSQTLVGLTSTKEG--HLIICDNANGLHKVS-EDG-VE  149 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~---~g--~I~~~~---~g~~~~~~~~~~~p~~gl~~d~~G--~L~v~~~~~gi~~~~-~~g-~~  149 (370)
                      .++++++|..+|+++.   +.  .|+.++   +|....+.. ..... ..++.+||  .+|++....++..++ .+| .+
T Consensus        68 ~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~  145 (582)
T 3o4h_A           68 LDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-VKPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGGLR  145 (582)
T ss_dssp             CEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-SCSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred             ccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccC-CCCce-eeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence            4456666644555543   22  466565   333332221 11222 34555555  466665556666667 566 55


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      .+... .     . .+++++|||+..+..+.             .......|+++|.++++.+.+.......+.++++||
T Consensus       146 ~l~~~-~-----~-~~~~~spDG~~la~~~~-------------~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpD  205 (582)
T 3o4h_A          146 ELARL-P-----G-FGFVSDIRGDLIAGLGF-------------FGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPG  205 (582)
T ss_dssp             EEEEE-S-----S-CEEEEEEETTEEEEEEE-------------EETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTT
T ss_pred             EeecC-C-----C-ceEEECCCCCEEEEEEE-------------cCCCCeEEEEEcCCCCCceEeecCCCccccceECCC
Confidence            44332 1     1 67899999986554221             001225699999988888776555445678999999


Q ss_pred             CCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCCCCcee--------ECCCCCEEEEEec
Q 017520          230 EDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGAPDNIN--------LAPDGTFWIAIIK  282 (370)
Q Consensus       230 g~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~--------~d~~G~lwv~~~~  282 (370)
                      |+.++.++..+   |+++|+++.+   .. ........+.+++        +++||.++++...
T Consensus       206 G~~l~~~~~~~~~~i~~~d~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  265 (582)
T 3o4h_A          206 MKVTAGLETAREARLVTVDPRDGS---VE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR  265 (582)
T ss_dssp             SCEEEEEECSSCEEEEEECTTTCC---EE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEccCCCeeEEEEEcCCCCc---EE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence            99988776655   8888877642   22 2222222234456        8999988777654

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.46  E-value=3.5e-06  Score=82.18  Aligned_cols=183  Identities=11%  Similarity=0.107  Sum_probs=114.1

Q ss_pred             CceEecCCCcCCCcceEEcCCC-cEEEEecCC--------------------------------------eEEEEe--C-
Q 017520           69 DFIKVGEGSVNHPEDASMDKNG-VIYTATRDG--------------------------------------WIKRLQ--D-  106 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G-~l~v~~~~g--------------------------------------~I~~~~--~-  106 (370)
                      -.+++..+.  +|+.++++++| .+|+++.+.                                      .|..+|  + 
T Consensus       187 v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~  264 (595)
T 1fwx_A          187 VAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKE  264 (595)
T ss_dssp             EEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG
T ss_pred             EEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCccc
Confidence            345555553  79999999887 566766321                                      244455  2 


Q ss_pred             -CeE-EEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC-------e----EEEEeecCCcccccccceEEcC
Q 017520          107 -GTW-VNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG-------V----ENFLSYVNGSKLRFANDVVEAS  170 (370)
Q Consensus       107 -g~~-~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g-------~----~~~~~~~~g~~~~~~~~l~~d~  170 (370)
                       ++. ..+...+..|+ |+.++|||+ +|+++.. ..+..++ .+.       +    ........|   ..|..+++++
T Consensus       265 ~~~~~~~~Ipvg~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~~  340 (595)
T 1fwx_A          265 ASSLFTRYIPIANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFDG  340 (595)
T ss_dssp             GCCSSEEEEEEESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEECT
T ss_pred             CCceeEEEEecCCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEECC
Confidence             222 33344556799 999999996 7887755 4577777 311       0    122222223   4688999999


Q ss_pred             CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC----------CeEEEEecCCCCc------cceEEccCCCEEE
Q 017520          171 DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----------NITTLVADGFYFA------NGVALSRDEDYVV  234 (370)
Q Consensus       171 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t----------~~~~~~~~~~~~p------~gi~~~~dg~~l~  234 (370)
                      +|++|++..                 -++.|.+||.++          .++..-.+-...|      .|+.+++||++||
T Consensus       341 dG~aY~t~~-----------------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~  403 (595)
T 1fwx_A          341 RGNAYTSLF-----------------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLV  403 (595)
T ss_dssp             TSEEEEEET-----------------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEE
T ss_pred             CCeEEEEEe-----------------cCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEE
Confidence            999999965                 345677777654          2222112222333      6788899999999


Q ss_pred             EEeCCc---E-----------EEEEeCCCCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          235 VCESWK---C-----------RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       235 v~~~~~---l-----------~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                      +++...   +           ..||+++.++....-.. . .+.|.+..+++...|
T Consensus       404 ~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p-~-~~ePh~~~i~~~~~~  457 (595)
T 1fwx_A          404 CLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP-T-FAEPHDAIAVHPSIL  457 (595)
T ss_dssp             EEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE-E-SSCCCCEEEECTTTT
T ss_pred             EcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEc-C-CCCCCceEEccHHHc
Confidence            999755   4           78898776543222211 2 346888888776654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.46  E-value=0.00016  Score=65.68  Aligned_cols=154  Identities=8%  Similarity=0.058  Sum_probs=99.8

Q ss_pred             EecCCCcCCCcceEEcCC---C--cEEEEecCCeEEEEe--CCe-EEEEEe-----cCCCceeceEEcCC----CcEEE-
Q 017520           72 KVGEGSVNHPEDASMDKN---G--VIYTATRDGWIKRLQ--DGT-WVNWKF-----IDSQTLVGLTSTKE----GHLII-  133 (370)
Q Consensus        72 ~~~~~~~~~P~~i~~d~~---G--~l~v~~~~g~I~~~~--~g~-~~~~~~-----~~~~p~~gl~~d~~----G~L~v-  133 (370)
                      .+..+.-....++++.++   +  .++++..++.|..|+  +++ ...+..     ...... ++++.++    |.+++ 
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~   90 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAV   90 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEE
Confidence            344444345677888852   3  477777888899998  343 333321     123456 8889887    55544 


Q ss_pred             EeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC
Q 017520          134 CDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (370)
Q Consensus       134 ~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~  209 (370)
                      +..++.|..++ .++  ...+...     ...+..+++.+ ++++.++.+                 .++.|..||..++
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~  148 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGH-----GNAINELKFHPRDPNLLLSVS-----------------KDHALRLWNIQTD  148 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESC-----CSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTTT
T ss_pred             ecCCCEEEEEEchhceEeeeecCC-----CCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEEeecC
Confidence            44444566666 555  3333211     13678899999 888666643                 3578999999877


Q ss_pred             eEEEEe----cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          210 ITTLVA----DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       210 ~~~~~~----~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      +.....    ........++++++++.++.+...+ |..|++..
T Consensus       149 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~  192 (366)
T 3k26_A          149 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS  192 (366)
T ss_dssp             EEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS
T ss_pred             eEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC
Confidence            665544    2234567899999999888887777 99998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.45  E-value=7.9e-05  Score=68.16  Aligned_cols=183  Identities=9%  Similarity=-0.077  Sum_probs=111.7

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEE---EecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--e
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNW---KFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--V  148 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~---~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~  148 (370)
                      ....++++.++|. +++++.+|.|..|+  +++....   ......+. .++++++|+.++ +...+.+..++ ..+  .
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            3457788988876 55566889999998  6653332   22334566 899999997555 44444455555 333  2


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC------------------CCe
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS------------------SNI  210 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~------------------t~~  210 (370)
                      ........+ ....+..+++.++|+.+++.+                 .++.|..||..                  +++
T Consensus       132 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKHIKKP-IRSTVLSLDWHPNSVLLAAGS-----------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEECTT-CCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeeeeecc-cCCCeeEEEEcCCCCEEEEEc-----------------CCCCEEEEEcccccccccccccccccccchhh
Confidence            222111111 124678899999998666643                 34678888842                  333


Q ss_pred             EEE-EecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          211 TTL-VADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       211 ~~~-~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ... +.........++++++++.++.+...+ |..|++...+  ....+. ........++++++|.+.++...+
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~d~  265 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGHDC  265 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEETTS
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--eeEEEc-cCCCCeEEEEEecCCCEEEEEeCC
Confidence            322 222333467899999999888888777 9999986532  222222 222234567888888766665444

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.45  E-value=3.5e-05  Score=69.59  Aligned_cols=215  Identities=9%  Similarity=0.105  Sum_probs=127.3

Q ss_pred             cCCCcceEEcCCCcEEEEe--cCCeEEEEe-CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC--------------Cc
Q 017520           78 VNHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA--------------NG  139 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~--~~g~I~~~~-~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~--------------~g  139 (370)
                      +.+-.-++. .++.||+..  .+++|++++ +|. .+.+...  .+. -|..+ ++.||.+...              ..
T Consensus        15 i~n~g~~~~-~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i~~~-g~~Iyy~~~~~~~~~~~~~~~~n~~~   89 (302)
T 3s25_A           15 LYNAGLFCE-SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YINAD-KNYVYYVRNNNQKITSQTFFSYDRNS   89 (302)
T ss_dssp             GGGTTCEEE-ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EEEEC-SSEEEEEEECC------CCSSCCSEE
T ss_pred             eecceEEEE-eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eEEEc-CCEEEEEECCCCcccccceeccCCCe
Confidence            333333454 467899987  368899999 664 4444332  233 45554 3467776532              35


Q ss_pred             eEEEcCCC--eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          140 LHKVSEDG--VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       140 i~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                      |++++.+|  .+.+... .        ..++.++ +.||+++.+              ......|++++.++...+.+..
T Consensus        90 Iy~i~~dg~~~~~l~~~-~--------~~~~s~~g~~Iy~~~~~--------------~~~~~~Iy~~~~dGs~~~~lt~  146 (302)
T 3s25_A           90 LCRIKRNGHGSTVLDPD-P--------CIYASLIGNYIYYLHYD--------------TQTATSLYRIRIDGEEKKKIKN  146 (302)
T ss_dssp             EEEEETTSCCCEEEECS-C--------EEEEEEETTEEEEEEES--------------SSSCEEEEEEETTSCCCEEEES
T ss_pred             EEEEeCCCCcceEeecC-C--------ccEEEEeCCEEEEEeec--------------CCCCceEEEEECCCCCeEEEeC
Confidence            88888655  4444321 1        1133444 479999711              0145689999998776666655


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhhc
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNS  293 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~  293 (370)
                      ...    .+++++++.||+++.+.  |++.++++.   ..+.+...    +....++++| .||.+.....         
T Consensus       147 ~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~---~~~~l~~~----~~~~~~~P~g~~iy~t~~~~~---------  206 (302)
T 3s25_A          147 HYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQ---SEALFYDC----NCYKPVVLDDTNVYYMDVNRD---------  206 (302)
T ss_dssp             SCC----CCSEEETTEEEEECTTTCCEEEEETTTT---EEEEEECS----CEEEEEEEETTEEEEEEGGGT---------
T ss_pred             CCc----eEeeEECCEEEEEeCCCceEEEEECCCC---CEEEEeCC----CccceeeecCCEEEEEEcCCC---------
Confidence            422    45688999999999854  999998774   23333321    2234455444 5666654421         


Q ss_pred             chhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEe-CCCCeEEEEeCC
Q 017520          294 SKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS-LTSNFIGKVQLS  370 (370)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs-~~~~~i~~~~~~  370 (370)
                                              ..|.+.+.+|.....+.+..      ...+...++.||..+ -..+.|.++++|
T Consensus       207 ------------------------~~I~~~~ldG~~~~~Lt~~~------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          207 ------------------------NAIVHVNINNPNPVVLTEAN------IEHYNVYGSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             ------------------------TEEEEECSSSCCCEECSCSC------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred             ------------------------cEEEEEECCCCCeEEEeCCC------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence                                    24788888887766664321      122444567777763 345677777765

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.44  E-value=1.5e-06  Score=73.65  Aligned_cols=112  Identities=14%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CC-------eEEEEEecCCCceeceEEcCCCcEEEEe
Q 017520           65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DG-------TWVNWKFIDSQTLVGLTSTKEGHLIICD  135 (370)
Q Consensus        65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g-------~~~~~~~~~~~p~~gl~~d~~G~L~v~~  135 (370)
                      ..+..+.++..+.+.+..+++++++|.||.. .+|.+++++  ++       ..+.+-...-.-...+.+|++|.||+..
T Consensus        27 ~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav~  105 (236)
T 1tl2_A           27 NWLARATLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS  105 (236)
T ss_dssp             CHHHHSEEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE
T ss_pred             chhhhccccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEeC
Confidence            4555677788766889999999999999998 789999998  32       1122211110012268999999999994


Q ss_pred             CCCceEEEc-C-CC-eEEEEe--ecCCcccccccceEEcCCCcEEEEe
Q 017520          136 NANGLHKVS-E-DG-VENFLS--YVNGSKLRFANDVVEASDGSLYFTV  178 (370)
Q Consensus       136 ~~~gi~~~~-~-~g-~~~~~~--~~~g~~~~~~~~l~~d~~G~l~v~d  178 (370)
                       +..|++++ + ++ -..+..  ............|.++|+|.||..+
T Consensus       106 -dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          106 -KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             -TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred             -CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence             56799999 3 33 221111  1111122355789999999999886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.43  E-value=0.00017  Score=67.20  Aligned_cols=135  Identities=5%  Similarity=-0.134  Sum_probs=81.4

Q ss_pred             cEEEEec--CC---eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeC----------CCceEEEc-CCC--eE
Q 017520           91 VIYTATR--DG---WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDN----------ANGLHKVS-EDG--VE  149 (370)
Q Consensus        91 ~l~v~~~--~g---~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~----------~~gi~~~~-~~g--~~  149 (370)
                      .+|+.+.  .+   .|+.+|  ++++......+.. . ++++++||+ ||+++.          .+.|..+| .++  ..
T Consensus        34 ~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~  111 (373)
T 2mad_H           34 RSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA  111 (373)
T ss_pred             EEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEE
Confidence            5777763  22   788888  6665433333333 4 899999995 999873          13477888 444  22


Q ss_pred             EEEeecCCcc--cccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEE
Q 017520          150 NFLSYVNGSK--LRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVAL  226 (370)
Q Consensus       150 ~~~~~~~g~~--~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~  226 (370)
                      .+........  ...|..++++||| .||+++..                ..+.|..+| ++++....  -+..+.++.+
T Consensus       112 ~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~viD-~t~~~~~~--~i~~~~~~~~  172 (373)
T 2mad_H          112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVV-QGGSSDDQ--LLSSPTCYHI  172 (373)
T ss_pred             EEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEEEEE-CCCCEEeE--EcCCCceEEE
Confidence            2211000100  1467899999999 58988642                246799999 88866432  0233444566


Q ss_pred             ccCCCEEEEEeCCc--EEEEEe
Q 017520          227 SRDEDYVVVCESWK--CRKYWL  246 (370)
Q Consensus       227 ~~dg~~l~v~~~~~--l~~~~~  246 (370)
                      .++++..|++....  +..++.
T Consensus       173 ~~~~~~~~~~~~~dg~~~~vd~  194 (373)
T 2mad_H          173 HPGAPSTFYLLCAQGGLAKTDH  194 (373)
T ss_pred             EeCCCceEEEEcCCCCEEEEEC
Confidence            66665566655543  666766

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.42  E-value=8.2e-05  Score=74.90  Aligned_cols=161  Identities=12%  Similarity=0.157  Sum_probs=93.7

Q ss_pred             CeEEEEe--CCeEEEEEec---CCCceeceEEcCCCc-EEEEeCCC-----ceEEEc-CCC--eEEEEeecCCccccccc
Q 017520           99 GWIKRLQ--DGTWVNWKFI---DSQTLVGLTSTKEGH-LIICDNAN-----GLHKVS-EDG--VENFLSYVNGSKLRFAN  164 (370)
Q Consensus        99 g~I~~~~--~g~~~~~~~~---~~~p~~gl~~d~~G~-L~v~~~~~-----gi~~~~-~~g--~~~~~~~~~g~~~~~~~  164 (370)
                      ..|+.++  +++.......   ...+. .+++++||+ |+++....     .|+.++ .+|  .+.+...........++
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~  313 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPKEKFLT-NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLH  313 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCTTCEEE-EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCS
T ss_pred             eEEEEEECCCCceEeeccCCCCceeEe-eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccC
Confidence            5688888  5554443321   12345 789999997 66654332     577777 555  33333221111111246


Q ss_pred             ceEEcC--CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc-eEEccCCCEEEEEeCC--
Q 017520          165 DVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESW--  239 (370)
Q Consensus       165 ~l~~d~--~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g-i~~~~dg~~l~v~~~~--  239 (370)
                      .+++++  ||+++++...               .....|+.++.+++..+.+..+...... +++++||+.++++...  
T Consensus       314 ~~~~sp~~dg~~l~~~~~---------------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          314 PLTFLPGSNNQFIWQSRR---------------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             CCEECTTCSSEEEEEECT---------------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CceeecCCCCEEEEEEcc---------------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            789999  9975554321               1345799999766666655443322334 7899999988887653  


Q ss_pred             ---c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          240 ---K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       240 ---~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                         . |++++.++.+   .+.+.  .......+++++||+.++..
T Consensus       379 ~~~~~l~~~d~~~~~---~~~l~--~~~~~~~~~~spdg~~l~~~  418 (706)
T 2z3z_A          379 PLERHFYCIDIKGGK---TKDLT--PESGMHRTQLSPDGSAIIDI  418 (706)
T ss_dssp             TTCBEEEEEETTCCC---CEESC--CSSSEEEEEECTTSSEEEEE
T ss_pred             CceEEEEEEEcCCCC---ceecc--CCCceEEEEECCCCCEEEEE
Confidence               2 7888866532   22222  12224457788899766554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.42  E-value=0.00033  Score=70.48  Aligned_cols=181  Identities=13%  Similarity=0.105  Sum_probs=113.9

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEcCCC--eEEEE
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~~~g--~~~~~  152 (370)
                      ...++++.++|.+ ..++.+|.|..|+  +++ ...+........ +++++++|+.+++....+ |..++..+  ...+.
T Consensus       432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~  510 (694)
T 3dm0_A          432 FVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS  510 (694)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceeec
Confidence            4567888888864 4566899999999  554 344444555677 999999997555444444 55555333  22222


Q ss_pred             eecCCcccccccceEEcCCC--cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccC
Q 017520          153 SYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD  229 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~d  229 (370)
                      ....+ ....+..+++.+++  .+.++.+                 .++.|..+|..+++......+ ......++++++
T Consensus       511 ~~~~~-h~~~v~~~~~~~~~~~~~l~s~s-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd  572 (694)
T 3dm0_A          511 EGGEG-HRDWVSCVRFSPNTLQPTIVSAS-----------------WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPD  572 (694)
T ss_dssp             SSTTS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             cCCCC-CCCcEEEEEEeCCCCcceEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCC
Confidence            11111 12357788998876  3444432                 357889999887766544433 334678999999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++.+..+...+ |..||+...+  ....+  ........+++++++.+.++....
T Consensus       573 g~~l~sg~~Dg~i~iwd~~~~~--~~~~~--~~~~~v~~~~~sp~~~~l~~~~~~  623 (694)
T 3dm0_A          573 GSLCASGGKDGVVLLWDLAEGK--KLYSL--EANSVIHALCFSPNRYWLCAATEH  623 (694)
T ss_dssp             SSEEEEEETTSBCEEEETTTTE--EEECC--BCSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEECCCCc--eEEEe--cCCCcEEEEEEcCCCcEEEEEcCC
Confidence            99777777777 8889876431  11111  122235568889998877665543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.41  E-value=8.6e-05  Score=68.63  Aligned_cols=147  Identities=11%  Similarity=0.012  Sum_probs=97.5

Q ss_pred             CCcceEEcC-CC-cEEEEecCCeEEEEe-CC-eEEEEEecC---CCceeceEEcCCCcEEEEeCC-CceEEEcCCC--eE
Q 017520           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ-DG-TWVNWKFID---SQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--VE  149 (370)
Q Consensus        80 ~P~~i~~d~-~G-~l~v~~~~g~I~~~~-~g-~~~~~~~~~---~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g--~~  149 (370)
                      ...++++.+ ++ .+++++.+|.|..++ .+ ....+....   .... ++++.++++++++... +.|..++.++  ..
T Consensus       120 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  198 (383)
T 3ei3_B          120 AITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHEIF  198 (383)
T ss_dssp             BEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCEEE
T ss_pred             ceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCEEE
Confidence            456788877 44 556677899999999 44 444443332   3456 8999999986554434 4455666444  44


Q ss_pred             EEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC----CeEEEEecCCCCccce
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----NITTLVADGFYFANGV  224 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t----~~~~~~~~~~~~p~gi  224 (370)
                      .+...     ...+..+++.++|. ++++.+                 .++.|..||..+    +..............+
T Consensus       199 ~~~~h-----~~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  256 (383)
T 3ei3_B          199 KEKLH-----KAKVTHAEFNPRCDWLMATSS-----------------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAA  256 (383)
T ss_dssp             EEECS-----SSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEE
T ss_pred             EeccC-----CCcEEEEEECCCCCCEEEEEe-----------------CCCEEEEEeCCCCCcccceEEEecCCCceEEE
Confidence            33211     13678899999997 666643                 357788888765    3343333344556789


Q ss_pred             EEcc-CCCEEEEEeCCc-EEEEEeCCC
Q 017520          225 ALSR-DEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       225 ~~~~-dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ++++ +++.++.+...+ |..|++...
T Consensus       257 ~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          257 YFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             EEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            9999 999888887777 999998654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.40  E-value=0.00027  Score=67.11  Aligned_cols=171  Identities=12%  Similarity=0.052  Sum_probs=100.1

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecC
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN  156 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~  156 (370)
                      ++.++ ++.+.+++.+|.|..|+  +++.. .+....+... .+++.+++.|..+..++.|..++ .++  ...+.    
T Consensus       127 ~~~~~-~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~-~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~----  200 (464)
T 3v7d_B          127 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE----  200 (464)
T ss_dssp             EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC----
T ss_pred             EEEEC-CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEE-EEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC----
Confidence            45554 45777888999999999  56543 3333455566 89998888666666555567777 566  33321    


Q ss_pred             CcccccccceEEc--CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE---------------------
Q 017520          157 GSKLRFANDVVEA--SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---------------------  213 (370)
Q Consensus       157 g~~~~~~~~l~~d--~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~---------------------  213 (370)
                      +. ...+..+++.  +++...++.+                 .++.|..+|..++....                     
T Consensus       201 ~h-~~~v~~l~~~~~~~~~~l~s~s-----------------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (464)
T 3v7d_B          201 GH-NSTVRCLDIVEYKNIKYIVTGS-----------------RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF  262 (464)
T ss_dssp             CC-SSCEEEEEEEESSSCEEEEEEE-----------------TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTE
T ss_pred             CC-CCccEEEEEecCCCCCEEEEEc-----------------CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEE
Confidence            11 1345666666  4666555533                 34667777765443211                     


Q ss_pred             --EecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          214 --VADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       214 --~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                        ...+ ....-.+++++++.++.+...+ |..||+...+  ....+. ........++++++|++.++..
T Consensus       263 ~~~~~~-~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          263 VGVLRG-HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK--CLYILS-GHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EEEECC-CSSCEEEEEEETTEEEEEETTSCEEEEETTTTE--EEEEEC-CCSSCEEEEEEETTTTEEEEEE
T ss_pred             EEEccC-ccceEEEEcCCCCEEEEEeCCCeEEEEECCCCc--EEEEec-CCCCCEEEEEEcCCCCEEEEEe
Confidence              0111 1122345678888888888777 9999976431  122221 2223345678888887555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.40  E-value=0.00016  Score=67.60  Aligned_cols=178  Identities=12%  Similarity=0.014  Sum_probs=111.9

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-C--Ce-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEE
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-D--GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFL  152 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~--g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~  152 (370)
                      ..++.+++ ..+++++.+|.|..++ .  +. ...+....+... +++++++|.++++... +.|..++ .++  ...+.
T Consensus       179 v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  256 (401)
T 4aez_A          179 VGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT  256 (401)
T ss_dssp             EEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC
T ss_pred             eEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec
Confidence            34455542 3566777888898888 3  22 344444555667 9999999976554434 4566666 555  33221


Q ss_pred             eecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520          153 SYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~  231 (370)
                      ..     ...+..+++.++| .++++.++               ..++.|..||..+++.............++++++++
T Consensus       257 ~~-----~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~  316 (401)
T 4aez_A          257 NH-----NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSK  316 (401)
T ss_dssp             CC-----SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSS
T ss_pred             CC-----cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCC
Confidence            11     2357889999977 56665431               135789999988776655444445678899999999


Q ss_pred             EEEEEe--CCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          232 YVVVCE--SWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       232 ~l~v~~--~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      .++++.  ..+ |..|++..........+ ....+....++++++|.+.++..
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~~  368 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQVDI-PAHDTRVLYSALSPDGRILSTAA  368 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEEEE-ECCSSCCCEEEECTTSSEEEEEC
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEEEe-cCCCCCEEEEEECCCCCEEEEEe
Confidence            877764  445 88888765322111112 12334466788999998666543

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.39  E-value=0.0012  Score=60.55  Aligned_cols=180  Identities=12%  Similarity=0.065  Sum_probs=111.3

Q ss_pred             CCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEE-Ec-CC---
Q 017520           76 GSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHK-VS-ED---  146 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~-~~-~~---  146 (370)
                      |.-....++++.++|. |..++.||.|..|+  +++. ..+........ .+++.++|.++++....+..+ ++ ..   
T Consensus        62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~-~~~~sp~g~~lasg~~d~~i~v~~~~~~~~  140 (354)
T 2pbi_B           62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVM-ACAYAPSGCAIACGGLDNKCSVYPLTFDKN  140 (354)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC-EEEECTTSSEEEEESTTSEEEEEECCCCTT
T ss_pred             CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEE-EEEECCCCCEEEEeeCCCCEEEEEEecccc
Confidence            4334567888988885 55666999999999  4543 33334445566 899999998777665544333 33 11   


Q ss_pred             -C----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCC
Q 017520          147 -G----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYF  220 (370)
Q Consensus       147 -g----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~  220 (370)
                       +    ...+..     ....+..+++.+++...++.+                 .++.|..||.++++......+ ...
T Consensus       141 ~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~t~s-----------------~D~~v~lwd~~~~~~~~~~~~h~~~  198 (354)
T 2pbi_B          141 ENMAAKKKSVAM-----HTNYLSACSFTNSDMQILTAS-----------------GDGTCALWDVESGQLLQSFHGHGAD  198 (354)
T ss_dssp             CCSGGGCEEEEE-----CSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             ccccccceeeec-----cCCcEEEEEEeCCCCEEEEEe-----------------CCCcEEEEeCCCCeEEEEEcCCCCC
Confidence             1    111111     113567889999987666543                 457899999887765443332 233


Q ss_pred             ccceEEcc--CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          221 ANGVALSR--DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       221 p~gi~~~~--dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ...+++++  +++.++.+...+ |..||+...+  ....+ .........+++.++|++.++..
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--~~~~~-~~h~~~v~~v~~~p~~~~l~s~s  259 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--CVQAF-ETHESDVNSVRYYPSGDAFASGS  259 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--EEEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--EEEEe-cCCCCCeEEEEEeCCCCEEEEEe
Confidence            45667766  567777777777 9999976532  12222 22333355678888887665543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.38  E-value=0.00029  Score=62.51  Aligned_cols=177  Identities=10%  Similarity=0.031  Sum_probs=101.7

Q ss_pred             CCCcceEEcCCC-cEEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNG-VIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~  150 (370)
                      ....++++ ++| .+.+++.+|.|..|+  +++.. .+........ .++++++++++++....| +..++ .+.  .+.
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~   96 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLN-SVCYDSEKELLLFGGKDTMINGVPLFATSGEDP   96 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEE-EEEEETTTTEEEEEETTSCEEEEETTCCTTSCC
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEE-EEEECCCCCEEEEecCCCeEEEEEeeecCCCCc
Confidence            35567777 544 677777999999999  55433 3344455566 899999998665544444 44444 221  111


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc-C
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-D  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~-d  229 (370)
                      +.. ..+. ...+..+.+  +++..++.+                 .++.|..+|.. .....+.........+++.+ +
T Consensus        97 ~~~-~~~~-~~~i~~~~~--~~~~l~~~~-----------------~d~~i~~~d~~-~~~~~~~~~~~~v~~~~~~~~~  154 (313)
T 3odt_A           97 LYT-LIGH-QGNVCSLSF--QDGVVISGS-----------------WDKTAKVWKEG-SLVYNLQAHNASVWDAKVVSFS  154 (313)
T ss_dssp             -CE-ECCC-SSCEEEEEE--ETTEEEEEE-----------------TTSEEEEEETT-EEEEEEECCSSCEEEEEEEETT
T ss_pred             ccc-hhhc-ccCEEEEEe--cCCEEEEEe-----------------CCCCEEEEcCC-cEEEecccCCCceeEEEEccCC
Confidence            111 1111 134566777  354444432                 34788888832 33333333344456777777 8


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++.++.+...+ |..|+...    ....+..........+++.++|.+.++...+
T Consensus       155 ~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg  205 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQNDK----VIKTFSGIHNDVVRHLAVVDDGHFISCSNDG  205 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTE----EEEEECSSCSSCEEEEEEEETTEEEEEETTS
T ss_pred             CCEEEEEECCCCEEEEecCc----eEEEEeccCcccEEEEEEcCCCeEEEccCCC
Confidence            88788877777 88887221    1222222233345667888888866665554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=0.00019  Score=65.61  Aligned_cols=183  Identities=14%  Similarity=0.128  Sum_probs=108.3

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEE---EEEecCCCceeceEEcCC--CcEEEE-eCCCceEEEc-CCC-
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV---NWKFIDSQTLVGLTSTKE--GHLIIC-DNANGLHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~---~~~~~~~~p~~gl~~d~~--G~L~v~-~~~~gi~~~~-~~g-  147 (370)
                      ....+++++++|. |.+++.+|.|..|+  .+..+   .+....+... ++++.++  ++++++ ..++.|..++ .++ 
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~   90 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   90 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETTE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCCc
Confidence            3466788998886 45566889999998  33332   2223344556 8999765  765554 4444466666 555 


Q ss_pred             eEEEEeecCCcccccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe---EEEEecCCCCcc
Q 017520          148 VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFAN  222 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~p~  222 (370)
                      ...+... .+ ....+..+++.++  |++.++..                 .++.|..||..++.   ...+........
T Consensus        91 ~~~~~~~-~~-~~~~v~~~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v~  151 (379)
T 3jrp_A           91 WSQIAVH-AV-HSASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGVN  151 (379)
T ss_dssp             EEEEEEE-CC-CSSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCTTSCCCEEEEECCTTCEE
T ss_pred             eeEeeee-cC-CCcceEEEEeCCCCCCCEEEEec-----------------CCCcEEEEecCCCCceeeEEecCCCCceE
Confidence            3332221 11 1235788999998  87666543                 35788888876552   222223334557


Q ss_pred             ceEEcc-------------CCCEEEEEeCCc-EEEEEeCCCCCC-ceeeeccCCCCCCCceeECCC---CCEEEEEe
Q 017520          223 GVALSR-------------DEDYVVVCESWK-CRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAII  281 (370)
Q Consensus       223 gi~~~~-------------dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~~~~~~g~p~~i~~d~~---G~lwv~~~  281 (370)
                      .+++++             +++.++.+...+ |..|++...... ..........+....++++++   |++.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  228 (379)
T 3jrp_A          152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS  228 (379)
T ss_dssp             EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe
Confidence            788988             688777777777 999988654211 111111122333556788888   66555443

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.38  E-value=6.8e-05  Score=69.48  Aligned_cols=187  Identities=10%  Similarity=0.081  Sum_probs=118.9

Q ss_pred             CcCCCcceEEcCCCcEEEEecC----------------CeEEEEe--CC--e-EEEEEec------CCCceeceEEc-C-
Q 017520           77 SVNHPEDASMDKNGVIYTATRD----------------GWIKRLQ--DG--T-WVNWKFI------DSQTLVGLTST-K-  127 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~~~----------------g~I~~~~--~g--~-~~~~~~~------~~~p~~gl~~d-~-  127 (370)
                      .+.....+.+|+.|+||+-|..                -+|..+|  ++  + ++++..+      ...-. .+++| . 
T Consensus        85 ~lvsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~-di~VD~~~  163 (381)
T 3q6k_A           85 ELTSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFG-GFAVDVAN  163 (381)
T ss_dssp             SSSCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEE-EEEEEESC
T ss_pred             ceEEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccc-eEEEeccc
Confidence            3678888999999999998721                1588898  55  4 4444322      11234 78888 2 


Q ss_pred             ------CCcEEEEeCC-CceEEEc-CCC--eEEEEee----------cCCccc---ccccceEEcCC----C-cEEEEeC
Q 017520          128 ------EGHLIICDNA-NGLHKVS-EDG--VENFLSY----------VNGSKL---RFANDVVEASD----G-SLYFTVS  179 (370)
Q Consensus       128 ------~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~----------~~g~~~---~~~~~l~~d~~----G-~l~v~d~  179 (370)
                            ++.+||+|.. .||+.++ .+|  .+.+...          ..|..+   ..+++|+.+++    + .||+.-.
T Consensus       164 ~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl  243 (381)
T 3q6k_A          164 PKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG  243 (381)
T ss_dssp             TTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES
T ss_pred             CCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC
Confidence                  4569999976 6899999 777  5544211          122222   35678899886    4 6999865


Q ss_pred             CCCCCCccceecccccCCCceEEEEeC------C-CCeEEEEecCCCCcc--ceEEc-cCCCEEEEEeCCc--EEEEEeC
Q 017520          180 SSKYLPHEYCLDILEGKPHGQLLKYDP------S-SNITTLVADGFYFAN--GVALS-RDEDYVVVCESWK--CRKYWLK  247 (370)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~g~l~~~d~------~-t~~~~~~~~~~~~p~--gi~~~-~dg~~l~v~~~~~--l~~~~~~  247 (370)
                      +                 ...+|++..      . ...++.+........  ++++| .+|. ||+++...  |.+++.+
T Consensus       244 s-----------------s~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~-ly~~~~~~~aI~~w~~~  305 (381)
T 3q6k_A          244 S-----------------AIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKV-IFFAEANTKQVSCWNTQ  305 (381)
T ss_dssp             S-----------------CSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCE-EEEEESSSSEEEEEETT
T ss_pred             C-----------------CCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCe-EEEEeccCCeEEEEeCC
Confidence            3                 235666642      1 234444433322233  45676 5565 99998876  9999977


Q ss_pred             C-C-CCCceeeecc-CCCCCCCceeECCCCCEEEEEec
Q 017520          248 G-E-RKGKLETFAE-NLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       248 ~-~-~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      + + +.++.+.+.. ..-..|+++.+|.+|++|+.+++
T Consensus       306 ~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          306 KMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             SCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEECS
T ss_pred             CCccccCceEEEEECCCccccCeEEECCCCeEEEEECc
Confidence            6 3 1234444432 22237999999999999999865

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.37  E-value=0.001  Score=60.07  Aligned_cols=176  Identities=11%  Similarity=0.125  Sum_probs=110.5

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEcCCC--eEEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVSEDG--VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~~~g--~~~~~  152 (370)
                      ...++++.++|. |..++.+|.|..|+  +++. ..+........ ++++++++.++++....+ |..++..+  ...+.
T Consensus        67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~  145 (319)
T 3frx_A           67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATLL  145 (319)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEEC
T ss_pred             cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence            456678888886 45666899999999  6653 44444555667 899999998766554444 55555334  43332


Q ss_pred             eecCCcccccccceEEcCC------CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceE
Q 017520          153 SYVNGSKLRFANDVVEASD------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVA  225 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~------G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~  225 (370)
                      ..     ...+..+.+.+.      +...++.+                 .++.|..+|..+.+......+ ....+.++
T Consensus       146 ~h-----~~~v~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~  203 (319)
T 3frx_A          146 GH-----NDWVSQVRVVPNEKADDDSVTIISAG-----------------NDKMVKAWNLNQFQIEADFIGHNSNINTLT  203 (319)
T ss_dssp             CC-----SSCEEEEEECCC------CCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCCSCEEEEE
T ss_pred             cc-----CCcEEEEEEccCCCCCCCccEEEEEe-----------------CCCEEEEEECCcchhheeecCCCCcEEEEE
Confidence            11     124556666653      33444432                 457888999887765443333 34557899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++|+++.+..+...+ |..||+...+.  ...+.  .......++++++|.+.++...
T Consensus       204 ~sp~g~~l~s~~~dg~i~iwd~~~~~~--~~~~~--~~~~v~~~~~sp~~~~la~~~~  257 (319)
T 3frx_A          204 ASPDGTLIASAGKDGEIMLWNLAAKKA--MYTLS--AQDEVFSLAFSPNRYWLAAATA  257 (319)
T ss_dssp             ECTTSSEEEEEETTCEEEEEETTTTEE--EEEEE--CCSCEEEEEECSSSSEEEEEET
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcE--EEEec--CCCcEEEEEEcCCCCEEEEEcC
Confidence            999999777777777 88888765321  12221  1223456888999976665544

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.37  E-value=1.1e-05  Score=81.37  Aligned_cols=136  Identities=9%  Similarity=-0.039  Sum_probs=86.7

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC----CceeceEEcCCCcEEE-EeCC---------CceEEE
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHLII-CDNA---------NGLHKV  143 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----~p~~gl~~d~~G~L~v-~~~~---------~gi~~~  143 (370)
                      .+.++++.+||.+++.+.+|.|+.++  +|+.........    .+. ++++++||+..+ +...         ..++.+
T Consensus        18 ~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            46778888999865556788899999  666555443322    256 899999998444 4322         345666


Q ss_pred             c-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC-
Q 017520          144 S-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY-  219 (370)
Q Consensus       144 ~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~-  219 (370)
                      + .+| .+.+... .+ ....+..++++|||+ |.++.                   .+.|+.+|.++++...+..... 
T Consensus        97 d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~~  155 (723)
T 1xfd_A           97 KIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGKE  155 (723)
T ss_dssp             ESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCBT
T ss_pred             ECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCCC
Confidence            6 555 4333211 11 112366789999995 55442                   1479999988776655543311 


Q ss_pred             ------------------CccceEEccCCCEEEEEe
Q 017520          220 ------------------FANGVALSRDEDYVVVCE  237 (370)
Q Consensus       220 ------------------~p~gi~~~~dg~~l~v~~  237 (370)
                                        ...+++++|||+.|+++.
T Consensus       156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence                              125799999999887765

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.37  E-value=0.00017  Score=71.59  Aligned_cols=182  Identities=10%  Similarity=0.039  Sum_probs=107.3

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCceE-EEc-CCC---eEE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLH-KVS-EDG---VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~-~~~-~~g---~~~  150 (370)
                      ..|..++++++|+..+...++.|..++  +++ ...+........ .++++|+|++.++....|.+ .++ .++   ...
T Consensus        19 g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~   97 (611)
T 1nr0_A           19 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT   97 (611)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE
T ss_pred             CceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceE-EEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE
Confidence            368889999999766555567888888  454 444444455567 89999999877755445544 445 343   221


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg  230 (370)
                      ...   +. ...+.+++++++|+..++.+...             ...+.|+.+|.. .....+.......+.++++|++
T Consensus        98 ~~~---~~-~~~v~~v~fs~dg~~l~~~~~~~-------------~~~~~v~~wd~~-~~~~~l~gh~~~v~~v~f~p~~  159 (611)
T 1nr0_A           98 TIP---VF-SGPVKDISWDSESKRIAAVGEGR-------------ERFGHVFLFDTG-TSNGNLTGQARAMNSVDFKPSR  159 (611)
T ss_dssp             EEE---CS-SSCEEEEEECTTSCEEEEEECCS-------------SCSEEEEETTTC-CBCBCCCCCSSCEEEEEECSSS
T ss_pred             eec---cc-CCceEEEEECCCCCEEEEEECCC-------------CceeEEEEeeCC-CCcceecCCCCCceEEEECCCC
Confidence            111   11 13678999999998666543200             012467777642 2222222223345789999998


Q ss_pred             CE-EEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          231 DY-VVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       231 ~~-l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      .. +..+...+ |..|+....+  ....+ ....+....++++++|++.++...
T Consensus       160 ~~~l~s~s~D~~v~lwd~~~~~--~~~~l-~~H~~~V~~v~fspdg~~las~s~  210 (611)
T 1nr0_A          160 PFRIISGSDDNTVAIFEGPPFK--FKSTF-GEHTKFVHSVRYNPDGSLFASTGG  210 (611)
T ss_dssp             SCEEEEEETTSCEEEEETTTBE--EEEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             CeEEEEEeCCCeEEEEECCCCe--Eeeee-ccccCceEEEEECCCCCEEEEEEC
Confidence            74 55555555 8878754321  11222 223334556888999987666543

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.35  E-value=0.0012  Score=60.86  Aligned_cols=147  Identities=9%  Similarity=-0.007  Sum_probs=92.4

Q ss_pred             CCcceEEcC-CC-cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcC---CCcEEE-EeCCCceEEEc-CCC--e
Q 017520           80 HPEDASMDK-NG-VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK---EGHLII-CDNANGLHKVS-EDG--V  148 (370)
Q Consensus        80 ~P~~i~~d~-~G-~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~---~G~L~v-~~~~~gi~~~~-~~g--~  148 (370)
                      ...++++.+ ++ .+.+++.+|.|..|+  +++............ .+.+.+   ++.+++ +...+.+..++ .++  .
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            456788877 55 466677899999999  555444444444455 777775   343444 44445577777 555  4


Q ss_pred             EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEEE-----------
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLV-----------  214 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~-----------  214 (370)
                      ..+...     ...+..+++.++|. ++++..                 .++.|..||..++.  ...+           
T Consensus       180 ~~~~~~-----~~~v~~~~~~~~~~~ll~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  237 (408)
T 4a11_B          180 HILQGH-----RQEILAVSWSPRYDYILATAS-----------------ADSRVKLWDVRRASGCLITLDQHNGKKSQAV  237 (408)
T ss_dssp             EEECCC-----CSCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTCSSCCSEECCTTTTCSCCCT
T ss_pred             eeecCC-----CCcEEEEEECCCCCcEEEEEc-----------------CCCcEEEEECCCCCcccccccccccccceee
Confidence            333211     13577899999986 555533                 34678888875443  1111           


Q ss_pred             ----ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          215 ----ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       215 ----~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                          .........++++++++.++.+...+ |..|++...
T Consensus       238 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~  277 (408)
T 4a11_B          238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNG  277 (408)
T ss_dssp             TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCC
Confidence                01122346789999999888888777 999998654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.34  E-value=3.4e-05  Score=71.42  Aligned_cols=150  Identities=8%  Similarity=-0.056  Sum_probs=90.4

Q ss_pred             ceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecC-CCce-eceEEcCCCcEEEEe----------------------
Q 017520           83 DASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFID-SQTL-VGLTSTKEGHLIICD----------------------  135 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~-~~p~-~gl~~d~~G~L~v~~----------------------  135 (370)
                      ++++.+||. |+++..++.|+.++  +++........ +... ....++++|.++++.                      
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFT  164 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGG
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhcc
Confidence            568888884 77777777899999  56554443322 2111 023457888877642                      


Q ss_pred             -CCCceEEEc-CCC-eEEEEeecCCcccccccceEEcC-CCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520          136 -NANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       136 -~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~-~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                       ....|+.++ .+| .+.+... .    ..+..++++| ||+ |.+..... .           ......|+.+|.+++.
T Consensus       165 ~~~~~l~~~d~~~g~~~~l~~~-~----~~~~~~~~sp~dg~~l~~~~~~~-~-----------~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          165 KPCCRLMRVDLKTGESTVILQE-N----QWLGHPIYRPYDDSTVAFCHEGP-H-----------DLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCEEEEEEETTTCCEEEEEEE-S----SCEEEEEEETTEEEEEEEEECSC-T-----------TTSSCSEEEEETTSCC
T ss_pred             CCcceEEEEECCCCceEEeecC-C----ccccccEECCCCCCEEEEEEecC-C-----------CCCcceEEEEeCCCCc
Confidence             113588888 666 5555432 1    2456789999 885 44443210 0           0124579999988776


Q ss_pred             EEEEecCCC--CccceEEccCCCEE-EEEeCCc-----EEEEEeCCC
Q 017520          211 TTLVADGFY--FANGVALSRDEDYV-VVCESWK-----CRKYWLKGE  249 (370)
Q Consensus       211 ~~~~~~~~~--~p~gi~~~~dg~~l-~v~~~~~-----l~~~~~~~~  249 (370)
                      .+.+.....  .....+++|||+.| |++...+     |+++++++.
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            665544321  23457899999866 4444322     888887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.34  E-value=0.00011  Score=74.94  Aligned_cols=177  Identities=11%  Similarity=0.042  Sum_probs=110.3

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~  151 (370)
                      ...++++.++|. |.+++.+|.|..|+  +++. ..+....+... .+++.++|..++ +..++.|..++ .++  ....
T Consensus        57 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  135 (814)
T 3mkq_A           57 PVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT  135 (814)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE
T ss_pred             cEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEE-EEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE
Confidence            456788888875 66777899999999  5553 44444455667 899999997544 44444455666 443  2222


Q ss_pred             EeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecCC-CCccceEEcc
Q 017520          152 LSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADGF-YFANGVALSR  228 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~~-~~p~gi~~~~  228 (370)
                      ....    ...+..+++.| +|+.+++.+                 .++.|..||..++... .+.... .....+++++
T Consensus       136 ~~~~----~~~v~~~~~~p~~~~~l~~~~-----------------~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~  194 (814)
T 3mkq_A          136 FEGH----EHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYP  194 (814)
T ss_dssp             EECC----SSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECC
T ss_pred             EcCC----CCcEEEEEEEcCCCCEEEEEe-----------------CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEE
Confidence            1111    13577889998 776665543                 3578999997655432 222222 4567889998


Q ss_pred             --CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          229 --DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       229 --dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                        +++.++.+...+ |..|++...+  ....+. ...+....++++++|.+.++..
T Consensus       195 ~~~~~~l~~~~~dg~i~~~d~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~~~~  247 (814)
T 3mkq_A          195 LPDKPYMITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGS  247 (814)
T ss_dssp             STTCCEEEEECTTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEE
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCCCCEEEEEe
Confidence              898777777777 8888875432  122221 2223345677888887555543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=98.34  E-value=2.3e-05  Score=73.45  Aligned_cols=180  Identities=14%  Similarity=0.154  Sum_probs=109.3

Q ss_pred             CCcceEEcC--CCcEEEEecCC----eEEEEe-CC-eEEEEEecC--------------CCceeceEEcC---CCcEEEE
Q 017520           80 HPEDASMDK--NGVIYTATRDG----WIKRLQ-DG-TWVNWKFID--------------SQTLVGLTSTK---EGHLIIC  134 (370)
Q Consensus        80 ~P~~i~~d~--~G~l~v~~~~g----~I~~~~-~g-~~~~~~~~~--------------~~p~~gl~~d~---~G~L~v~  134 (370)
                      ...+|++|+  ++.||+++..|    .|++.+ .| .++.+....              .... +|++++   .+.||++
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l~~g  134 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTWYAG  134 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCEEEE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEEEEE
Confidence            467899998  78999999777    899987 44 355543210              1234 678885   6789998


Q ss_pred             eCCCceEEEcCCC--eEEEEeec--C------------CcccccccceEEcC--CCcEEEEeCCCCCCCccceecccccC
Q 017520          135 DNANGLHKVSEDG--VENFLSYV--N------------GSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       135 ~~~~gi~~~~~~g--~~~~~~~~--~------------g~~~~~~~~l~~d~--~G~l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      ....+|++.+..|  ++.+....  +            +.....+..|++|+  ++++|++..                 
T Consensus       135 ~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~-----------------  197 (394)
T 3b7f_A          135 TSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMS-----------------  197 (394)
T ss_dssp             EETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEE-----------------
T ss_pred             ecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEEC-----------------
Confidence            7677899988655  55442210  0            11122456789987  468999853                 


Q ss_pred             CCceEEEEeCCCCeEEEEecCC-------------CCccceEEccC-CCEEEEEeCCcEEEEEeCCCCCCceeeeccCCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGF-------------YFANGVALSRD-EDYVVVCESWKCRKYWLKGERKGKLETFAENLP  262 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~-------------~~p~gi~~~~d-g~~l~v~~~~~l~~~~~~~~~~~~~~~~~~~~~  262 (370)
                       .++|++.+..+..++.+....             .....++++++ .+.+|++...+|++.+-.+.   +.+.+...++
T Consensus       198 -~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~G~---tW~~~~~~l~  273 (394)
T 3b7f_A          198 -SGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRREG---VWKRIGDAMP  273 (394)
T ss_dssp             -TBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETTTT---EEECGGGGSC
T ss_pred             -CCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCCCC---cceECCCCCC
Confidence             256888876655665543321             11346778875 45688887666888863332   2222221122


Q ss_pred             C----CCCceeEC--CCCCEEEEEe
Q 017520          263 G----APDNINLA--PDGTFWIAII  281 (370)
Q Consensus       263 g----~p~~i~~d--~~G~lwv~~~  281 (370)
                      .    +...+++|  ..+.+|+++.
T Consensus       274 ~~~~~~~~~i~~~p~~~~~l~~~t~  298 (394)
T 3b7f_A          274 REVGDIGFPIVVHQRDPRTVWVFPM  298 (394)
T ss_dssp             TTTCSCEEEEEECSSCTTCEEEEEC
T ss_pred             CCCccceEEEEECCCCCCEEEEEec
Confidence            1    11236666  4578999874

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.32  E-value=0.00026  Score=66.90  Aligned_cols=181  Identities=13%  Similarity=0.112  Sum_probs=109.1

Q ss_pred             CCCcceEEcCC-Cc-EEEEecCCeEEEEe--C----------Ce-EEEEEecCCCceeceEEcCCCc-EEEEeCC-CceE
Q 017520           79 NHPEDASMDKN-GV-IYTATRDGWIKRLQ--D----------GT-WVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLH  141 (370)
Q Consensus        79 ~~P~~i~~d~~-G~-l~v~~~~g~I~~~~--~----------g~-~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~  141 (370)
                      ..+.++++.++ +. +++++.+|.|..|+  .          .. ...+......+. ++++++++. ++++... +.|.
T Consensus       129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~  207 (430)
T 2xyi_A          129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGY-GLSWNPNLNGYLLSASDDHTIC  207 (430)
T ss_dssp             SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCC-CEEECTTSTTEEEEECTTSCEE
T ss_pred             CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeE-EEEeCCCCCCeEEEEeCCCeEE
Confidence            36788999886 43 45566889999998  3          22 233444455667 999999887 6555444 4466


Q ss_pred             EEc-CCC---eEEEE--eecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC----e
Q 017520          142 KVS-EDG---VENFL--SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN----I  210 (370)
Q Consensus       142 ~~~-~~g---~~~~~--~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~----~  210 (370)
                      .++ ..+   ...+.  ....+ ....++++++.+ ++.++++..                 .++.|..||..++    .
T Consensus       208 vwd~~~~~~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~l~s~~-----------------~dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          208 LWDINATPKEHRVIDAKNIFTG-HTAVVEDVAWHLLHESLFGSVA-----------------DDQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEETTSCCBGGGEEECSEEECC-CSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCSCSSSC
T ss_pred             EEeCCCCCCCCceeccceeecC-CCCCEeeeEEeCCCCCEEEEEe-----------------CCCeEEEEECCCCCCCcc
Confidence            666 332   11110  11111 123578899998 567777754                 3578999998755    2


Q ss_pred             EEEEecCCCCccceEEccCCCEEE-EEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          211 TTLVADGFYFANGVALSRDEDYVV-VCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       211 ~~~~~~~~~~p~gi~~~~dg~~l~-v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                      ...+......++.+++++++..++ .+...+ |..|++..... ....+. ...+....+++.++|. ++++.
T Consensus       270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~~~~-~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLHSFE-SHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSEEEE-CCSSCEEEEEECSSCTTEEEEE
T ss_pred             eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeEEee-cCCCCEEEEEECCCCCCEEEEE
Confidence            233333344578899999987544 555556 99999865321 122222 2233455688888884 45444

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.32  E-value=0.00026  Score=71.29  Aligned_cols=177  Identities=14%  Similarity=0.135  Sum_probs=108.6

Q ss_pred             CCcceEEcCCC-c-EEEEecCCeEEEEe-C-C-----e-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC
Q 017520           80 HPEDASMDKNG-V-IYTATRDGWIKRLQ-D-G-----T-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~G-~-l~v~~~~g~I~~~~-~-g-----~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g  147 (370)
                      ...+|++.+++ + |..++.+|.|..|+ . +     . ...+........ +++++++|++.++....| |..++ .++
T Consensus       384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~-~v~~s~~g~~l~sgs~Dg~v~vwd~~~~  462 (694)
T 3dm0_A          384 MVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVE-DVVLSSDGQFALSGSWDGELRLWDLAAG  462 (694)
T ss_dssp             CEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             eeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEE-EEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            45677777643 4 55677899999998 2 1     1 223344455567 899999998766554445 55555 566


Q ss_pred             --eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC----CCCc
Q 017520          148 --VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----FYFA  221 (370)
Q Consensus       148 --~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----~~~p  221 (370)
                        ...+...     ...+..++++++|+..++.+                 .++.|..+|..+.....+...    ....
T Consensus       463 ~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s-----------------~D~~i~iwd~~~~~~~~~~~~~~~h~~~v  520 (694)
T 3dm0_A          463 VSTRRFVGH-----TKDVLSVAFSLDNRQIVSAS-----------------RDRTIKLWNTLGECKYTISEGGEGHRDWV  520 (694)
T ss_dssp             EEEEEEECC-----SSCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTSCEEEEECSSTTSCSSCE
T ss_pred             cceeEEeCC-----CCCEEEEEEeCCCCEEEEEe-----------------CCCEEEEEECCCCcceeeccCCCCCCCcE
Confidence              3333211     13577899999998666643                 346788888764443333221    1234


Q ss_pred             cceEEccCC--CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          222 NGVALSRDE--DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       222 ~gi~~~~dg--~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ..+++++++  ..++.+...+ |..||+...+.  ...+ ....+....++++++|++.++...
T Consensus       521 ~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~--~~~~-~~h~~~v~~v~~spdg~~l~sg~~  581 (694)
T 3dm0_A          521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--RSTL-AGHTGYVSTVAVSPDGSLCASGGK  581 (694)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTCCE--EEEE-CCCSSCEEEEEECTTSSEEEEEET
T ss_pred             EEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE--EEEE-cCCCCCEEEEEEeCCCCEEEEEeC
Confidence            678899886  4455556666 88898765321  2222 233344566889999987666543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.32  E-value=0.00048  Score=62.83  Aligned_cols=182  Identities=11%  Similarity=0.079  Sum_probs=108.2

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEEEEe
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VENFLS  153 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~~~~  153 (370)
                      ...++++.++|.+ ..++.+|.|..|+  +++ ...+........ +++++++|+.+++... +.|..++-.+ ......
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~  156 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSSA  156 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEECC
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeeee
Confidence            4567888888865 4566899999999  555 344544555677 9999999986554434 4455555333 221111


Q ss_pred             ecCCcccccccceEEcCCC----------cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc
Q 017520          154 YVNGSKLRFANDVVEASDG----------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G----------~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g  223 (370)
                      ...+ ....+..+++.+++          .++++.+                 .++.|..||........+.......+.
T Consensus       157 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~h~~~v~~  218 (343)
T 2xzm_R          157 EKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFASVG-----------------WDGRLKVWNTNFQIRYTFKAHESNVNH  218 (343)
T ss_dssp             TTTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEEEE-----------------TTSEEEEEETTTEEEEEEECCSSCEEE
T ss_pred             cccC-CCceeeeeeeccccccccccCCCCCEEEEEc-----------------CCCEEEEEcCCCceeEEEcCccccceE
Confidence            1111 12346677887776          3444322                 457888888653333333333345678


Q ss_pred             eEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          224 VALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       224 i~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +++++||+.+..+...+ |..||+..... ....+.  .......++++++|.+..+...+
T Consensus       219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~-~~~~~~--~~~~v~~v~~sp~~~~la~~~d~  276 (343)
T 2xzm_R          219 LSISPNGKYIATGGKDKKLLIWDILNLTY-PQREFD--AGSTINQIAFNPKLQWVAVGTDQ  276 (343)
T ss_dssp             EEECTTSSEEEEEETTCEEEEEESSCCSS-CSEEEE--CSSCEEEEEECSSSCEEEEEESS
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCcc-cceeec--CCCcEEEEEECCCCCEEEEECCC
Confidence            99999999777777777 88888743211 111221  11225568888988766554443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.31  E-value=0.00044  Score=61.31  Aligned_cols=220  Identities=13%  Similarity=0.086  Sum_probs=129.2

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CC---e-EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DG---T-WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VEN  150 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g---~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~  150 (370)
                      ...++++.++|. +++++.+|.|..++  +.   + ...+........ .+.++ ...++.+...+.+..++ .+  ...
T Consensus        61 ~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~~  137 (313)
T 3odt_A           61 FLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVC-SLSFQ-DGVVISGSWDKTAKVWK-EGSLVYN  137 (313)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEE-TTEEEEE
T ss_pred             cEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEE-EEEec-CCEEEEEeCCCCEEEEc-CCcEEEe
Confidence            466788888775 55667889888888  22   2 333333344455 78884 33455555444455555 34  333


Q ss_pred             EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~  228 (370)
                      +...     ...+..+.+.+ +++..++.+                 .++.|..||.. .....+.. .......+++++
T Consensus       138 ~~~~-----~~~v~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~-~~~~~~~~~~~~~i~~~~~~~  194 (313)
T 3odt_A          138 LQAH-----NASVWDAKVVSFSENKFLTAS-----------------ADKTIKLWQND-KVIKTFSGIHNDVVRHLAVVD  194 (313)
T ss_dssp             EECC-----SSCEEEEEEEETTTTEEEEEE-----------------TTSCEEEEETT-EEEEEECSSCSSCEEEEEEEE
T ss_pred             cccC-----CCceeEEEEccCCCCEEEEEE-----------------CCCCEEEEecC-ceEEEEeccCcccEEEEEEcC
Confidence            2211     13456677766 676555533                 34778888843 23333332 334567889999


Q ss_pred             CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcc
Q 017520          229 DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKL  307 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (370)
                      ++. ++.+...+ |..|++...+  ....+. ...+....++++++|.+..+...+                        
T Consensus       195 ~~~-~~~~~~dg~i~i~d~~~~~--~~~~~~-~~~~~i~~~~~~~~~~l~~~~~dg------------------------  246 (313)
T 3odt_A          195 DGH-FISCSNDGLIKLVDMHTGD--VLRTYE-GHESFVYCIKLLPNGDIVSCGEDR------------------------  246 (313)
T ss_dssp             TTE-EEEEETTSEEEEEETTTCC--EEEEEE-CCSSCEEEEEECTTSCEEEEETTS------------------------
T ss_pred             CCe-EEEccCCCeEEEEECCchh--hhhhhh-cCCceEEEEEEecCCCEEEEecCC------------------------
Confidence            998 77777766 9999976432  122222 233445678899999877666554                        


Q ss_pred             ccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEeC
Q 017520          308 FSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       308 ~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~~  369 (370)
                                 .+..+| .+++.+..+..+.+    .++.+... ++++..++. ...|..+++
T Consensus       247 -----------~v~iwd~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~-dg~i~iw~~  294 (313)
T 3odt_A          247 -----------TVRIWSKENGSLKQVITLPAI----SIWSVDCMSNGDIIVGSS-DNLVRIFSQ  294 (313)
T ss_dssp             -----------EEEEECTTTCCEEEEEECSSS----CEEEEEECTTSCEEEEET-TSCEEEEES
T ss_pred             -----------EEEEEECCCCceeEEEeccCc----eEEEEEEccCCCEEEEeC-CCcEEEEeC
Confidence                       577778 46788887766543    34555544 456555544 345555543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.31  E-value=0.0006  Score=61.05  Aligned_cols=177  Identities=11%  Similarity=0.075  Sum_probs=105.7

Q ss_pred             CcceEEcCCCc-EEEEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEEE
Q 017520           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFL  152 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~~  152 (370)
                      ..++++.++|+ |.+++.++.|..|+  +++ ...+....+... ++++.+++.++++....+ |..++ +++  .....
T Consensus        58 v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~  136 (304)
T 2ynn_A           58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIR-SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF  136 (304)
T ss_dssp             EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred             EEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEE-EEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence            35667777765 55677899999999  555 344544555677 999999998666544444 55555 444  22221


Q ss_pred             eecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecC-CCCccceEEcc-
Q 017520          153 SYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADG-FYFANGVALSR-  228 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~-~~~p~gi~~~~-  228 (370)
                         .+. ...+..++++| ++.+.++.+                 .++.|..||..++... .+... ....+.+.+.+ 
T Consensus       137 ---~~h-~~~v~~v~~~p~~~~~l~sgs-----------------~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~  195 (304)
T 2ynn_A          137 ---EGH-EHFVMCVAFNPKDPSTFASGC-----------------LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL  195 (304)
T ss_dssp             ---CCC-CSCEEEEEECTTCTTEEEEEE-----------------TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS
T ss_pred             ---ccc-CCcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc
Confidence               221 13578899998 567666643                 3578888887644322 22222 22334566665 


Q ss_pred             -CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          229 -DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       229 -dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                       +++.++.+...+ |..||+...+  ....+. ........+++.+++.+.++...
T Consensus       196 ~~~~~l~s~s~D~~i~iWd~~~~~--~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~  248 (304)
T 2ynn_A          196 PDKPYMITASDDLTIKIWDYQTKS--CVATLE-GHMSNVSFAVFHPTLPIIISGSE  248 (304)
T ss_dssp             TTCCEEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSEEEEEET
T ss_pred             CCCCEEEEEcCCCeEEEEeCCCCc--cceeeC-CCCCCEEEEEECCCCCEEEEEcC
Confidence             677677777666 8888876431  122221 22223445778888886665443

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.31  E-value=4.8e-05  Score=68.85  Aligned_cols=222  Identities=12%  Similarity=0.024  Sum_probs=128.7

Q ss_pred             CCCcceEEcCCCc--EEEEecCCeEEEEe---CCeEEEEEe--cCCCceeceEEcCCCcEEE-EeCCCceEEEc-CC--C
Q 017520           79 NHPEDASMDKNGV--IYTATRDGWIKRLQ---DGTWVNWKF--IDSQTLVGLTSTKEGHLII-CDNANGLHKVS-ED--G  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~--l~v~~~~g~I~~~~---~g~~~~~~~--~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~--g  147 (370)
                      ....++++.++|.  |++++.+|.|..|+   +++...+..  ...... ++++.+ +++++ +...+.|..++ .+  +
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~-~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~  134 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC-RICKYG-DDKLIAASWDGLIEVIDPRNYGD  134 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEE-EEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceE-EEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence            3567788888887  77788899999997   345555444  445566 899988 76555 44444466666 33  1


Q ss_pred             -e-E---EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-Ce--EEEEe-cCC
Q 017520          148 -V-E---NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-NI--TTLVA-DGF  218 (370)
Q Consensus       148 -~-~---~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~~--~~~~~-~~~  218 (370)
                       . .   .......  ....+..+++++++ ++++.                  .++.|..||..+ +.  ..... ...
T Consensus       135 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~~-l~~~~------------------~d~~i~i~d~~~~~~~~~~~~~~~~~  193 (342)
T 1yfq_A          135 GVIAVKNLNSNNTK--VKNKIFTMDTNSSR-LIVGM------------------NNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             BCEEEEESCSSSSS--SCCCEEEEEECSSE-EEEEE------------------STTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             ccccccCCeeeEEe--eCCceEEEEecCCc-EEEEe------------------CCCeEEEEECCccccccceeeecCCC
Confidence             1 0   0000111  12356788888887 65553                  347889999876 32  22222 223


Q ss_pred             CCccceEEcc-CCCEEEEEeCCc-EEEEEeCCC--C--CCceeeeccCC--------CCCCCceeECCCCCEEEEEecCc
Q 017520          219 YFANGVALSR-DEDYVVVCESWK-CRKYWLKGE--R--KGKLETFAENL--------PGAPDNINLAPDGTFWIAIIKLD  284 (370)
Q Consensus       219 ~~p~gi~~~~-dg~~l~v~~~~~-l~~~~~~~~--~--~~~~~~~~~~~--------~g~p~~i~~d~~G~lwv~~~~~~  284 (370)
                      .....+++++ +++.++++...+ |..|+.+..  .  ......+....        .+....++++++|++.++.... 
T Consensus       194 ~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-  272 (342)
T 1yfq_A          194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSD-  272 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETT-
T ss_pred             CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCC-
Confidence            3567899999 999888888777 777776543  0  11122222111        1134567888988744443322 


Q ss_pred             hhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeCC-CCCccccceeEEEECCEEEEEeCCC
Q 017520          285 ARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVDP-TGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~-~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                                                       +.|..+|. +++.+..+... .+    .++.+...+..|..++..+
T Consensus       273 ---------------------------------g~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          273 ---------------------------------GIISCWNLQTRKKIKNFAKFNED----SVVKIACSDNILCLATSDD  314 (342)
T ss_dssp             ---------------------------------SCEEEEETTTTEEEEECCCCSSS----EEEEEEECSSEEEEEEECT
T ss_pred             ---------------------------------ceEEEEcCccHhHhhhhhcccCC----CceEecCCCCeEEEEecCC
Confidence                                             34677774 47777776554 32    3444443335566666554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.30  E-value=0.00034  Score=64.25  Aligned_cols=175  Identities=15%  Similarity=0.132  Sum_probs=111.0

Q ss_pred             CcceEEcCCC-cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcC--CCcEEE-EeCCCceEEEc-CCC--eEE
Q 017520           81 PEDASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTK--EGHLII-CDNANGLHKVS-EDG--VEN  150 (370)
Q Consensus        81 P~~i~~d~~G-~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~--~G~L~v-~~~~~gi~~~~-~~g--~~~  150 (370)
                      ..++++.+++ .|..++.+|.|..|+  +++. ..+........ .+.+.+  +|++++ +..++.+..++ +++  ...
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            3456777766 577778999999999  5653 44444444555 777765  566554 45445566777 566  333


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC---CCCccceEEc
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGVALS  227 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~p~gi~~~  227 (370)
                      +    .+. ...++.+++.|+|+.+++.+                 .++.|..||..++........   ......++++
T Consensus       236 ~----~~h-~~~v~~v~~~p~~~~l~s~s-----------------~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          236 F----ETH-ESDVNSVRYYPSGDAFASGS-----------------DDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             E----CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             e----cCC-CCCeEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            3    111 13678899999998777644                 357788899876654333322   1234678999


Q ss_pred             cCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          228 RDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       228 ~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ++++.++.+...+ |..||+....  ....+. ...+....++++++|++.++..
T Consensus       294 ~~g~~l~~g~~d~~i~vwd~~~~~--~~~~l~-~h~~~v~~l~~spdg~~l~sgs  345 (354)
T 2pbi_B          294 LSGRLLFAGYNDYTINVWDVLKGS--RVSILF-GHENRVSTLRVSPDGTAFCSGS  345 (354)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCS--EEEEEC-CCSSCEEEEEECTTSSCEEEEE
T ss_pred             CCCCEEEEEECCCcEEEEECCCCc--eEEEEE-CCCCcEEEEEECCCCCEEEEEc
Confidence            9999888877777 9999875431  122222 2333455688899997655543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.30  E-value=0.00058  Score=73.29  Aligned_cols=180  Identities=14%  Similarity=0.100  Sum_probs=114.0

Q ss_pred             CCCcceEEcCCCcEE-EEecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEE
Q 017520           79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~  150 (370)
                      ....++++.++|... +++.+|.|..|+  +++ ...+....+... +++++++|++.++... +.|..++ .++  +..
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            345678899988654 566889999999  554 344444455667 9999999986665444 4466666 566  333


Q ss_pred             EEeecCCcccccccceEEcCCC--cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEc
Q 017520          151 FLSYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALS  227 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~  227 (370)
                      +...     ...+..+++.+++  .+.++.+                 .++.|..||..+++...... .......++++
T Consensus       695 ~~~~-----~~~v~~~~~~~~~~~~~l~sg~-----------------~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          695 YDEH-----SEQVNCCHFTNKSNHLLLATGS-----------------NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EECC-----SSCEEEEEECSSSSCCEEEEEE-----------------TTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             EcCC-----CCcEEEEEEecCCCceEEEEEe-----------------CCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            3211     1356788888853  4544432                 45789999988776544333 33456789999


Q ss_pred             cCCCEEEEEeCCc-EEEEEeCCCCCCceeeec------------cCCCCCCCceeECCCCCEEEEEecC
Q 017520          228 RDEDYVVVCESWK-CRKYWLKGERKGKLETFA------------ENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       228 ~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~------------~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++++.++.+...+ |..|++.....  ...+.            .........++++++|...++...+
T Consensus       753 p~~~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~  819 (1249)
T 3sfz_A          753 PDDELLASCSADGTLRLWDVRSANE--RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN  819 (1249)
T ss_dssp             SSTTEEEEEESSSEEEEEEGGGTEE--EEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred             cCCCEEEEEECCCeEEEEeCCCCcc--cceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence            9999887777777 88888765321  11110            0011134457788999877766544

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.30  E-value=0.002  Score=58.59  Aligned_cols=172  Identities=16%  Similarity=0.058  Sum_probs=98.3

Q ss_pred             CCCcEEEEecCCeEEEEe--CCe-EEEEE-ecCCCceeceEEcC--CCcEEEE-eCCCceEEEc-CCC-eEEEEeecCCc
Q 017520           88 KNGVIYTATRDGWIKRLQ--DGT-WVNWK-FIDSQTLVGLTSTK--EGHLIIC-DNANGLHKVS-EDG-VENFLSYVNGS  158 (370)
Q Consensus        88 ~~G~l~v~~~~g~I~~~~--~g~-~~~~~-~~~~~p~~gl~~d~--~G~L~v~-~~~~gi~~~~-~~g-~~~~~~~~~g~  158 (370)
                      .||.+.+-+.++.+..++  .++ +..+. ...+... ++++++  +|+++++ ..++.+..++ .++ ......   ..
T Consensus        93 ~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~  168 (343)
T 3lrv_A           93 PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---AK  168 (343)
T ss_dssp             STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC---CC
T ss_pred             CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---cC
Confidence            344444444444444445  333 22222 1223456 899999  8987774 4444566666 556 322211   11


Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE--EEec-CCCCccceEEccCCCEEEE
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT--LVAD-GFYFANGVALSRDEDYVVV  235 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~--~~~~-~~~~p~gi~~~~dg~~l~v  235 (370)
                      ....+..++++++|.+.++-+                 .++.|..||..+++..  .+.. .......++++++++.+..
T Consensus       169 ~~~~i~~~~~~pdg~~lasg~-----------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          169 SDVEYSSGVLHKDSLLLALYS-----------------PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             SSCCCCEEEECTTSCEEEEEC-----------------TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc-----------------CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            123478899999998777643                 3578999998876643  2322 2345678999999997777


Q ss_pred             EeCCcEEEEEeCCCCC-CceeeeccCCCCCCC---ceeECCCCCEEEEEec
Q 017520          236 CESWKCRKYWLKGERK-GKLETFAENLPGAPD---NINLAPDGTFWIAIIK  282 (370)
Q Consensus       236 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~g~p~---~i~~d~~G~lwv~~~~  282 (370)
                      +..+.|..||+...+. .....+.  ....+-   .++++++|++.++...
T Consensus       232 ~~~~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~l~~~s~  280 (343)
T 3lrv_A          232 ECDQTVVCFDLRKDVGTLAYPTYT--IPEFKTGTVTYDIDDSGKNMIAYSN  280 (343)
T ss_dssp             EESSBEEEEETTSSTTCBSSCCCB--C-----CCEEEEECTTSSEEEEEET
T ss_pred             EeCCeEEEEEcCCCCcceeecccc--cccccccceEEEECCCCCEEEEecC
Confidence            7743499999865421 1111111  011222   3889999987776543

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.29  E-value=0.00027  Score=64.23  Aligned_cols=149  Identities=9%  Similarity=-0.024  Sum_probs=90.7

Q ss_pred             CCcceEEcCC----C-cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcC-CCcEEEEeC-CCceEEEc-CCC-
Q 017520           80 HPEDASMDKN----G-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTK-EGHLIICDN-ANGLHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~----G-~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~-~G~L~v~~~-~~gi~~~~-~~g-  147 (370)
                      ...++++.++    | .|++++.+|.|..|+  +++. ..+........ ++++.+ +++++++.. ++.|..++ .++ 
T Consensus        71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  149 (366)
T 3k26_A           71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTDT  149 (366)
T ss_dssp             CEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTTE
T ss_pred             cEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecCe
Confidence            3566777766    3 366777999999999  5554 33433455567 999998 787655543 44566677 556 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe------------
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------------  215 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------  215 (370)
                      .........+ ....+..++++++|+..++..                 .++.|..||..+++.....            
T Consensus       150 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~  211 (366)
T 3k26_A          150 LVAIFGGVEG-HRDEVLSADYDLLGEKIMSCG-----------------MDHSLKLWRINSKRMMNAIKESYDYNPNKTN  211 (366)
T ss_dssp             EEEEECSTTS-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESCSHHHHHHHHHHHTCCGGGCS
T ss_pred             EEEEeccccc-ccCceeEEEECCCCCEEEEec-----------------CCCCEEEEECCCCccccccceeEEecCCCCc
Confidence            2222211111 124678899999997666643                 3467888887654321100            


Q ss_pred             -----------------cCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          216 -----------------DGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       216 -----------------~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                                       ........++++  ++.++.+...+ |..|++...
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~  261 (366)
T 3k26_A          212 RPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKM  261 (366)
T ss_dssp             SCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESST
T ss_pred             ccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCc
Confidence                             012234567776  66666666666 888988654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.26  E-value=7.1e-05  Score=69.30  Aligned_cols=150  Identities=13%  Similarity=0.155  Sum_probs=95.7

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe---cCCCceeceEEcCCCcEEEEeC-CC--c--eEEEc-CCC-
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGHLIICDN-AN--G--LHKVS-EDG-  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~-~~--g--i~~~~-~~g-  147 (370)
                      ...+|++.+||.+.+...++.+.+++  +++......   ...... ++++.++|..+++.. ..  +  +..++ ..+ 
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence            46789999999887766677788888  554332211   122345 899999998666432 22  2  33344 333 


Q ss_pred             eEEEE-eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecC-CCCccce
Q 017520          148 VENFL-SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADG-FYFANGV  224 (370)
Q Consensus       148 ~~~~~-~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~-~~~p~gi  224 (370)
                      ..... ....+ ....+..++++|||++.++-+                 .++.|..||.++++... +..+ ......+
T Consensus       257 ~~~~~~~~~~~-~~~~V~~~~~Spdg~~lasgs-----------------~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          257 TSVLRSKQVTN-RFKGITSMDVDMKGELAVLAS-----------------NDNSIALVKLKDLSMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             EEEEEEEEEES-SCSCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred             ecceeeeeecC-CCCCeEeEEECCCCCceEEEc-----------------CCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence            22111 11111 123578899999998776643                 35789999998877543 3333 3346789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      +|+|||+.|.-+...+ |..|++..
T Consensus       319 ~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          319 TISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             EECTTSCEEEEEETTSEEEEEECCT
T ss_pred             EECCCCCEEEEEeCCCeEEEEEcCC
Confidence            9999999777666666 88888754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.26  E-value=0.00013  Score=72.76  Aligned_cols=176  Identities=10%  Similarity=-0.033  Sum_probs=100.9

Q ss_pred             CCCc--EEEEe-cCCeEEEEe-C----CeEEEEEe-----cCCCceeceEEcCCCc-EEEEeCC----------CceEEE
Q 017520           88 KNGV--IYTAT-RDGWIKRLQ-D----GTWVNWKF-----IDSQTLVGLTSTKEGH-LIICDNA----------NGLHKV  143 (370)
Q Consensus        88 ~~G~--l~v~~-~~g~I~~~~-~----g~~~~~~~-----~~~~p~~gl~~d~~G~-L~v~~~~----------~gi~~~  143 (370)
                      +||.  |+++. .+.+|+.++ +    ++...+..     ...... ++++++||+ |+.+...          ..|+.+
T Consensus        88 PDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~  166 (662)
T 3azo_A           88 PAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAV  166 (662)
T ss_dssp             SSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEE
T ss_pred             cCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCceeEEEEE
Confidence            6774  45554 467899998 7    55555543     223456 889999997 5444332          257778


Q ss_pred             c-CC------C-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC-CC---e
Q 017520          144 S-ED------G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SN---I  210 (370)
Q Consensus       144 ~-~~------g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~---~  210 (370)
                      + .+      + .+.+..  .+  ......++++|||+ |+++.....  ..        .-....|+.+|.+ ++   +
T Consensus       167 ~~~~~~~~~~~~~~~l~~--~~--~~~~~~~~~SpDG~~la~~~~~~~--~~--------~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          167 PLDGSAAADRSAVRELSD--DA--HRFVTGPRLSPDGRQAVWLAWDHP--RM--------PWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             ETTSTTTTCGGGSEESSC--SC--SSEECCCEECTTSSEEEEEEECTT--CC--------TTTCEEEEEEEECTTSCEEE
T ss_pred             ECCCCccccCCceeEEEe--cC--CCcccCceECCCCCEEEEEECCCC--CC--------CCCCcEEEEEEECCCCcccc
Confidence            7 55      6 444320  11  13456789999996 555542100  00        0012479999987 46   5


Q ss_pred             EEEEecC-CCCccceEEccCCCEEEEEeCCc---EEEEEeCCCCCCceeeeccCCCCC--------CCceeECCCCCEEE
Q 017520          211 TTLVADG-FYFANGVALSRDEDYVVVCESWK---CRKYWLKGERKGKLETFAENLPGA--------PDNINLAPDGTFWI  278 (370)
Q Consensus       211 ~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~~~~~g~--------p~~i~~d~~G~lwv  278 (370)
                      .+.+..+ ......+++++||+.++.++..+   |+++++++.   +.+.+.......        ...+++.++|.+++
T Consensus       233 ~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~  309 (662)
T 3azo_A          233 TRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAV  309 (662)
T ss_dssp             EEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEE
T ss_pred             cEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEE
Confidence            5555443 34567789999999555555444   888876443   222222111000        23567777888776


Q ss_pred             EEe
Q 017520          279 AII  281 (370)
Q Consensus       279 ~~~  281 (370)
                      ...
T Consensus       310 ~~~  312 (662)
T 3azo_A          310 VHG  312 (662)
T ss_dssp             EEB
T ss_pred             EEE
Confidence            654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.25  E-value=0.00048  Score=61.71  Aligned_cols=179  Identities=16%  Similarity=0.104  Sum_probs=100.2

Q ss_pred             CCCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCe-----EEEEEecCCCceeceEEcC--CCcEEEEeCCCc-eEEE
Q 017520           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGT-----WVNWKFIDSQTLVGLTSTK--EGHLIICDNANG-LHKV  143 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~-----~~~~~~~~~~p~~gl~~d~--~G~L~v~~~~~g-i~~~  143 (370)
                      .+.-....+++++++|. |.+++.+|.|..|+  ++.     ...+........ ++++.+  +++++++....| |..+
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            34334567889998886 55667899999998  331     222333445566 899987  577655443444 5555


Q ss_pred             c-CCC-e-------EEEEeecCCcccccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          144 S-EDG-V-------ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       144 ~-~~g-~-------~~~~~~~~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      + .++ .       +.+.. ..+. ...+..+++.++  |++.++.+                 .++.|..||..+++..
T Consensus        87 d~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~  147 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCT-LNDS-KGSLYSVKFAPAHLGLKLACLG-----------------NDGILRLYDALEPSDL  147 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEE-ECCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTCEEEEEECSSTTCT
T ss_pred             ecCCCcccccccCcceeee-eccc-CCceeEEEEcCCCCCcEEEEec-----------------CCCcEEEecCCChHHh
Confidence            5 332 1       22221 1211 235778999998  87666533                 3477888887654321


Q ss_pred             E------Ee--------cCCCCccceEEccC---CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC
Q 017520          213 L------VA--------DGFYFANGVALSRD---EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG  274 (370)
Q Consensus       213 ~------~~--------~~~~~p~gi~~~~d---g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G  274 (370)
                      .      ..        ........++++++   ++.++++...+ +..++....+......+ ....+....++++++|
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL-PGHKSLIRSISWAPSI  226 (351)
T ss_dssp             TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEEC-CCCCSCEEEEEECCCS
T ss_pred             ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeec-CCCCcceeEEEECCCC
Confidence            0      00        12234467888887   88777777777 53333322211111111 1222334567788887

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.25  E-value=0.00018  Score=67.16  Aligned_cols=180  Identities=16%  Similarity=0.092  Sum_probs=111.2

Q ss_pred             CCCcceEEcCCC--cEEEEecCCeEEEEe--CCeEEEEE---ecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC--
Q 017520           79 NHPEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG--  147 (370)
Q Consensus        79 ~~P~~i~~d~~G--~l~v~~~~g~I~~~~--~g~~~~~~---~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g--  147 (370)
                      ....++++.++|  .++.++.+|.|..|+  +++.....   ...+... +++++++|++++ +..++.|..++ +++  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            345678888887  355667899999999  56543332   2344566 899999997554 44444566677 566  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE--EEE-ecCCCCccce
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT--TLV-ADGFYFANGV  224 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~--~~~-~~~~~~p~gi  224 (370)
                      ...+...   .....+..+++.++|+++++..+              ...++.|..||..+...  ... .........+
T Consensus       211 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDRP---HEGTRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEECS---SCSSSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeeccC---CCCCcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            3332111   11123678899999987766410              01357899999876432  121 2333456788


Q ss_pred             EEccCCCEEEEEeC-Cc-EEEEEeCCCC--CCceeeeccCCCCCCCceeECCCCCEEE
Q 017520          225 ALSRDEDYVVVCES-WK-CRKYWLKGER--KGKLETFAENLPGAPDNINLAPDGTFWI  278 (370)
Q Consensus       225 ~~~~dg~~l~v~~~-~~-l~~~~~~~~~--~~~~~~~~~~~~g~p~~i~~d~~G~lwv  278 (370)
                      +++++++.++++.. .+ |..|++...+  ......+  ...+....+++.++|.+.+
T Consensus       274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~--~~~~~v~~~~~sp~~~~~~  329 (402)
T 2aq5_A          274 FFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMF--SSKESQRGMGYMPKRGLEV  329 (402)
T ss_dssp             EEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEE--CCSSCCSEEEECCGGGSCG
T ss_pred             EEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeeccc--ccCCcccceEEecccccce
Confidence            99999998888775 44 9999987643  1112222  1223466788888775533

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.24  E-value=0.0011  Score=65.66  Aligned_cols=178  Identities=14%  Similarity=0.099  Sum_probs=109.5

Q ss_pred             CCcceEEcCCCcEE-EEecCCeEEEEe--CCe--E-EEEEecCCCceeceEEcCCCcEEEEeCCC----ceEEEcCCC--
Q 017520           80 HPEDASMDKNGVIY-TATRDGWIKRLQ--DGT--W-VNWKFIDSQTLVGLTSTKEGHLIICDNAN----GLHKVSEDG--  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~--~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~----gi~~~~~~g--  147 (370)
                      .-.++++.++|.+. .++.+|.|..|+  +++  . ..+....+... +++++++|...++....    +.+++...|  
T Consensus        61 ~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~-~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~  139 (611)
T 1nr0_A           61 QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGTS  139 (611)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCCB
T ss_pred             ceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceE-EEEECCCCCEEEEEECCCCceeEEEEeeCCCC
Confidence            45678999999644 566899999998  332  2 23333445567 99999999866643321    233333334  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVA  225 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~  225 (370)
                      ...+    .+. ...++.+++.|++. ..++.+                 .++.|..||..+++......+ ....+.++
T Consensus       140 ~~~l----~gh-~~~v~~v~f~p~~~~~l~s~s-----------------~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~  197 (611)
T 1nr0_A          140 NGNL----TGQ-ARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHSVR  197 (611)
T ss_dssp             CBCC----CCC-SSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEEEE
T ss_pred             ccee----cCC-CCCceEEEECCCCCeEEEEEe-----------------CCCeEEEEECCCCeEeeeeccccCceEEEE
Confidence            2221    221 24678899999986 344433                 357788888776655433333 34567899


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc------CCCCCCCceeECCCCCEEEEEec
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE------NLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~------~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      ++|||+.+..+...+ |..|+....+.  ...+..      ...+....++++++|.+.++...
T Consensus       198 fspdg~~las~s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~  259 (611)
T 1nr0_A          198 YNPDGSLFASTGGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  259 (611)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             ECCCCCEEEEEECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEEEeC
Confidence            999999777677666 88888654311  111211      12233556888999987666543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.24  E-value=0.00012  Score=73.83  Aligned_cols=196  Identities=10%  Similarity=0.002  Sum_probs=104.4

Q ss_pred             CCcceEEcCCCc-EEEEec---------CCeEEEEe--CCeEEEEEecCC---CceeceEEcCCCcEEEEeCCCceEEEc
Q 017520           80 HPEDASMDKNGV-IYTATR---------DGWIKRLQ--DGTWVNWKFIDS---QTLVGLTSTKEGHLIICDNANGLHKVS  144 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~---------~g~I~~~~--~g~~~~~~~~~~---~p~~gl~~d~~G~L~v~~~~~gi~~~~  144 (370)
                      ...++++++||+ |.++..         ++.|+.++  +++.+.+....+   .+. .++++|||+..+......|+.++
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~  140 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFENNIYYCA  140 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEETTEEEEES
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEECCeEEEEE
Confidence            377899999997 444443         26788888  566544433222   255 78899999643333345788888


Q ss_pred             -CCC-eEEEEee-cCCc-------------ccccccceEEcCCCc-EEEEeCCCCCCCcccee------------ccc--
Q 017520          145 -EDG-VENFLSY-VNGS-------------KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCL------------DIL--  193 (370)
Q Consensus       145 -~~g-~~~~~~~-~~g~-------------~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~------------~~~--  193 (370)
                       .+| ...+... ..+.             -+..+..++++|||+ |.++.... -....+..            .+.  
T Consensus       141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  219 (723)
T 1xfd_A          141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHYP  219 (723)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccCC
Confidence             556 4443321 1110             011336789999996 55543110 00000000            000  


Q ss_pred             ---ccCCCceEEEEeCCCCeE-EEEecC------CCCccceEEccCCCEEEEE-eCC---c-EEEEEeCCCCCCceeeec
Q 017520          194 ---EGKPHGQLLKYDPSSNIT-TLVADG------FYFANGVALSRDEDYVVVC-ESW---K-CRKYWLKGERKGKLETFA  258 (370)
Q Consensus       194 ---~~~~~g~l~~~d~~t~~~-~~~~~~------~~~p~gi~~~~dg~~l~v~-~~~---~-l~~~~~~~~~~~~~~~~~  258 (370)
                         .......|+.+|.++++. ..+...      ......++++|||+.++.. +..   . |+.+|+++.+.  ...+.
T Consensus       220 ~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~--~~~~~  297 (723)
T 1xfd_A          220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVC--TKKHE  297 (723)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCE--EEEEE
T ss_pred             CCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcc--eEEEE
Confidence               001123789999887764 333221      1223468999999966444 322   2 88888765422  11111


Q ss_pred             cCCCCC----CCceeECCCCC-EEEE
Q 017520          259 ENLPGA----PDNINLAPDGT-FWIA  279 (370)
Q Consensus       259 ~~~~g~----p~~i~~d~~G~-lwv~  279 (370)
                      ....+.    +..+++++||+ +++.
T Consensus       298 ~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          298 DESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eccCCEEeccCCCceEcCCCCeEEEE
Confidence            111121    24688899997 4443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.22  E-value=0.0011  Score=62.20  Aligned_cols=185  Identities=9%  Similarity=0.080  Sum_probs=106.7

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe--CCe------------EEEEEecC------------CCceeceEEcCCC--c
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGT------------WVNWKFID------------SQTLVGLTSTKEG--H  130 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~------------~~~~~~~~------------~~p~~gl~~d~~G--~  130 (370)
                      ...+++++++|.+ .+|+.+|.|..|+  +++            ...+....            .... ++++.+++  .
T Consensus        30 ~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~-~l~~~~~~~~~  108 (447)
T 3dw8_B           30 IISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN-KIRWLPQKNAA  108 (447)
T ss_dssp             SEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCC-EEEECCCCSSS
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceE-EEEEcCCCCcc
Confidence            4567888988864 4666899999998  333            22333333            4466 89999987  4


Q ss_pred             EEE-EeCCCceEEEc-CCC-eEEE------------------------------------EeecCCcccccccceEEcCC
Q 017520          131 LII-CDNANGLHKVS-EDG-VENF------------------------------------LSYVNGSKLRFANDVVEASD  171 (370)
Q Consensus       131 L~v-~~~~~gi~~~~-~~g-~~~~------------------------------------~~~~~g~~~~~~~~l~~d~~  171 (370)
                      .++ +..++.|..++ .++ ....                                    ...........+..+++.++
T Consensus       109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  188 (447)
T 3dw8_B          109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD  188 (447)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred             eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence            444 44334444444 332 1100                                    00000111235778999999


Q ss_pred             CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEe--------cCCCCccceEEccCC-CEEEEEeCCc-
Q 017520          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVA--------DGFYFANGVALSRDE-DYVVVCESWK-  240 (370)
Q Consensus       172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~--------~~~~~p~gi~~~~dg-~~l~v~~~~~-  240 (370)
                      |+++++.                  .++.|..||..+. +.....        ........+++++++ +.++.+...+ 
T Consensus       189 ~~~l~s~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          189 YETYLSA------------------DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT  250 (447)
T ss_dssp             SSEEEEE------------------CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred             CCEEEEe------------------CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence            9877773                  2478888988732 222111        112335789999998 8777777777 


Q ss_pred             EEEEEeCCCCCCc--eeeeccCCC-----------CCCCceeECCCCCEEEEEecC
Q 017520          241 CRKYWLKGERKGK--LETFAENLP-----------GAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       241 l~~~~~~~~~~~~--~~~~~~~~~-----------g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |..||+...+...  ...+.....           +....++++++|++.++...+
T Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~  306 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYL  306 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESS
T ss_pred             EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCC
Confidence            9999986543210  222321110           134568889999877765443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.22  E-value=0.00026  Score=71.99  Aligned_cols=248  Identities=14%  Similarity=0.026  Sum_probs=128.2

Q ss_pred             ceEEcCCCc-EEEEecC---------CeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-e
Q 017520           83 DASMDKNGV-IYTATRD---------GWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-V  148 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~~~---------g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~  148 (370)
                      ++.+.+||+ |.+++.+         +.++.++  +|+.+.+....+... ..+++|||+..+......|+.++ .+| .
T Consensus        66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYVWNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEEETTEEEEESSTTSCC
T ss_pred             ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEEECCeEEEEECCCCce
Confidence            367889996 4555432         5677788  566554433334445 78899999633333346788888 555 4


Q ss_pred             EEEEee-cC-----Ccc--------cccccceEEcCCCc-EEEEeCCCCCCCccceec----------------c-c--c
Q 017520          149 ENFLSY-VN-----GSK--------LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLD----------------I-L--E  194 (370)
Q Consensus       149 ~~~~~~-~~-----g~~--------~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~----------------~-~--~  194 (370)
                      +.+... ..     |.+        +.....++++|||+ |.+.... .-....+...                . .  +
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d-~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~  223 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN-DTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA  223 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE-CTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc-ccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence            433211 00     100        12234588999996 5544210 0001111000                0 0  0


Q ss_pred             cCCCceEEEEeCCC---C---eEEEEec------CCCCccceEEccCCCEEE-EEeCCc----EEEEEeCCCC----CCc
Q 017520          195 GKPHGQLLKYDPSS---N---ITTLVAD------GFYFANGVALSRDEDYVV-VCESWK----CRKYWLKGER----KGK  253 (370)
Q Consensus       195 ~~~~g~l~~~d~~t---~---~~~~~~~------~~~~p~gi~~~~dg~~l~-v~~~~~----l~~~~~~~~~----~~~  253 (370)
                      ......|+.+|.++   +   +...+..      .......++++|||+.++ +.....    |+.+++++.+    ...
T Consensus       224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~  303 (740)
T 4a5s_A          224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV  303 (740)
T ss_dssp             CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred             cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence            11223688999987   6   4444432      222345678999998443 333332    8888887643    011


Q ss_pred             eeee-ccCCCCC-----CCceeECCCCCEE---EEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 017520          254 LETF-AENLPGA-----PDNINLAPDGTFW---IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA  324 (370)
Q Consensus       254 ~~~~-~~~~~g~-----p~~i~~d~~G~lw---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  324 (370)
                      ...+ .+...+.     +....+++||..+   .+...+                                 +..|+.+|
T Consensus       304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G---------------------------------~~~l~~~~  350 (740)
T 4a5s_A          304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG---------------------------------YRHICYFQ  350 (740)
T ss_dssp             GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS---------------------------------CEEEEEEE
T ss_pred             EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC---------------------------------ceEEEEEE
Confidence            1111 1111111     3467889999732   222222                                 35688888


Q ss_pred             CCCcEEEEEeCCCCCccccceeEE-EECCEEEEEeCC------CCeEEEEeC
Q 017520          325 EDGTIIRNLVDPTGQLMSFVTSGL-QVDNHLYVISLT------SNFIGKVQL  369 (370)
Q Consensus       325 ~~g~~~~~~~~~~g~~~~~~t~~~-~~~g~L~~gs~~------~~~i~~~~~  369 (370)
                      .+|+....++....    .+..+. .+++.||+.+..      ...|.++++
T Consensus       351 ~~~~~~~~lT~g~~----~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~  398 (740)
T 4a5s_A          351 IDKKDCTFITKGTW----EVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQL  398 (740)
T ss_dssp             TTCSSCEESCCSSS----CEEEEEEECSSEEEEEESCGGGCTTCBEEEEEET
T ss_pred             CCCCceEecccCCE----EEEEEEEEeCCEEEEEEecCCCCCceeEEEEEEC
Confidence            87776665554221    222222 336778877654      235666554

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.21  E-value=0.00086  Score=63.01  Aligned_cols=151  Identities=11%  Similarity=0.123  Sum_probs=92.2

Q ss_pred             CCCcceEEcC-CCc-EEEEecCCeEEEEe--C---Ce----EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-C
Q 017520           79 NHPEDASMDK-NGV-IYTATRDGWIKRLQ--D---GT----WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-E  145 (370)
Q Consensus        79 ~~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~---g~----~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~  145 (370)
                      ....++++.+ +|. |..++.+|.|..|+  +   +.    ...+ ...+... ++++.++++++++....| |..++ .
T Consensus        64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vwd~~  141 (437)
T 3gre_A           64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVT-QITMIPNFDAFAVSSKDGQIIVLKVN  141 (437)
T ss_dssp             SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEE-EEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred             CceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEEec
Confidence            4567889998 875 45566899999998  3   32    1222 3445567 999999887655444444 44443 2


Q ss_pred             ---CC--eEEEEee----cCCc---ccccccceE--EcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          146 ---DG--VENFLSY----VNGS---KLRFANDVV--EASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       146 ---~g--~~~~~~~----~~g~---~~~~~~~l~--~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                         ++  .......    ..-.   ....+..+.  ..+++.+.++.+                 .++.|..||..+++.
T Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT-----------------NLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE-----------------TTSEEEEEETTTCCE
T ss_pred             cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe-----------------CCCeEEEEeCCCCee
Confidence               34  2211110    0000   011233333  446676555533                 357899999887765


Q ss_pred             EEEecC---CCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          212 TLVADG---FYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       212 ~~~~~~---~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ......   ......++++++++.++.+...+ |..||+..
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  245 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF  245 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence            443332   34567899999999888888777 99999764

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00088  Score=65.26  Aligned_cols=180  Identities=9%  Similarity=-0.042  Sum_probs=101.9

Q ss_pred             CCCcceEEcCCCcEEEEe-cCCeEEE------------------Ee-CCeEE---EEE---------ecCCCceeceEEc
Q 017520           79 NHPEDASMDKNGVIYTAT-RDGWIKR------------------LQ-DGTWV---NWK---------FIDSQTLVGLTST  126 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~-~~g~I~~------------------~~-~g~~~---~~~---------~~~~~p~~gl~~d  126 (370)
                      .+-.++++.+||.++++. .|+.|..                  +. +|...   .+.         ....... +++++
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEEC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEEC
Confidence            467889999999988876 5555531                  11 11100   000         0112345 89999


Q ss_pred             CCCcEEEEeCCCc-eEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEE
Q 017520          127 KEGHLIICDNANG-LHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (370)
Q Consensus       127 ~~G~L~v~~~~~g-i~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~  204 (370)
                      |||...++....| +..++..+ +..+. .....+...+++++++|||++.++.+                 .+|.|..|
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs-----------------~DGtVkIW  156 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN-----------------EDGELQFF  156 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE-----------------TTSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEc-----------------CCCEEEEE
Confidence            9998555444444 44554444 33332 11111123578999999997444432                 35789999


Q ss_pred             eCCCCe--------EEEEecC----CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCc-eeeeccCCCCCCCceeE
Q 017520          205 DPSSNI--------TTLVADG----FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGK-LETFAENLPGAPDNINL  270 (370)
Q Consensus       205 d~~t~~--------~~~~~~~----~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~-~~~~~~~~~g~p~~i~~  270 (370)
                      |.+++.        +..+...    ......++++|||  +..+..++ +..+++++....+ ...+..........+++
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaF  234 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKI  234 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEE
Confidence            988764        2333211    2356789999999  66666666 9999987754321 11221112233566777


Q ss_pred             CCCCCEEEEEe
Q 017520          271 APDGTFWIAII  281 (370)
Q Consensus       271 d~~G~lwv~~~  281 (370)
                      .  |+..++..
T Consensus       235 s--g~~LASa~  243 (588)
T 2j04_A          235 V--DYKVVLTC  243 (588)
T ss_dssp             E--TTEEEEEC
T ss_pred             E--CCEEEEEe
Confidence            6  45555543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.18  E-value=0.0012  Score=64.94  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             eEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520          318 AHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       318 g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                      +.++.+| ..|++++.+....+.....+  ....+|++|++...+
T Consensus       485 g~l~a~D~~tG~~lw~~~~~~~~~~~p~--~~~~~G~~yv~~~~G  527 (571)
T 2ad6_A          485 GYLKALDNKDGKELWNFKMPSGGIGSPM--TYSFKGKQYIGSMYG  527 (571)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCE--EEEETTEEEEEEEEC
T ss_pred             CeEEEEECCCCCEEEEEeCCCCcEeeeE--EEEECCEEEEEEECC
Confidence            5689999 57999999987665422222  224789999987654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.16  E-value=0.00035  Score=63.91  Aligned_cols=144  Identities=10%  Similarity=0.043  Sum_probs=83.6

Q ss_pred             CceeceEEcCCCcEEEEeCCCc-eEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccc
Q 017520          118 QTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILE  194 (370)
Q Consensus       118 ~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~  194 (370)
                      ... .++++++|+++++....+ |..++ .++ .........+. ...+..++++++|+..++.+               
T Consensus        18 ~v~-~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~s---------------   80 (345)
T 3fm0_A           18 RCW-FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWSPCGNYLASAS---------------   80 (345)
T ss_dssp             CEE-EEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-SSCEEEEEECTTSSEEEEEE---------------
T ss_pred             cEE-EEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-CCcEEEEEECCCCCEEEEEE---------------
Confidence            556 899999998766544444 44455 444 22111111221 24678899999998766643               


Q ss_pred             cCCCceEEEEeCCCCeEE---EEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520          195 GKPHGQLLKYDPSSNITT---LVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINL  270 (370)
Q Consensus       195 ~~~~g~l~~~d~~t~~~~---~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  270 (370)
                        .++.+..+|..++..+   .+.........++++++++.++.+...+ |..|++.....................+++
T Consensus        81 --~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~  158 (345)
T 3fm0_A           81 --FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW  158 (345)
T ss_dssp             --TTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEE
T ss_pred             --CCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEE
Confidence              3456666766555332   2222234567899999999777777777 888988654221111111122223445677


Q ss_pred             CCCCCEEEEE
Q 017520          271 APDGTFWIAI  280 (370)
Q Consensus       271 d~~G~lwv~~  280 (370)
                      .++|++.++.
T Consensus       159 ~p~~~~l~s~  168 (345)
T 3fm0_A          159 HPSQELLASA  168 (345)
T ss_dssp             CSSSSCEEEE
T ss_pred             CCCCCEEEEE
Confidence            8888644443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.16  E-value=0.00046  Score=62.48  Aligned_cols=175  Identities=14%  Similarity=-0.000  Sum_probs=99.7

Q ss_pred             CCCcceEEcCCCcEEE--Eec---CCeEEEEe--CCeEEEE--EecCCCceeceEEcCC---Cc-EEEEeCCCceEEEc-
Q 017520           79 NHPEDASMDKNGVIYT--ATR---DGWIKRLQ--DGTWVNW--KFIDSQTLVGLTSTKE---GH-LIICDNANGLHKVS-  144 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v--~~~---~g~I~~~~--~g~~~~~--~~~~~~p~~gl~~d~~---G~-L~v~~~~~gi~~~~-  144 (370)
                      ....++++.++|..++  ++.   +|.|..|+  +++....  ........ ++++.++   |+ |+.+...+.|..++ 
T Consensus        19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~iwd~   97 (357)
T 3i2n_A           19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIK-CGTFGATSLQQRYLATGDFGGNLHIWNL   97 (357)
T ss_dssp             SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEE-EEECTTCCTTTCCEEEEETTSCEEEECT
T ss_pred             CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEE-EEEEcCCCCCCceEEEecCCCeEEEEeC
Confidence            4567889999885443  333   78899998  5554322  23344566 8999987   55 55555445566666 


Q ss_pred             CCC---eEEEEeecCCcccccccce------EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEE
Q 017520          145 EDG---VENFLSYVNGSKLRFANDV------VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTL  213 (370)
Q Consensus       145 ~~g---~~~~~~~~~g~~~~~~~~l------~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~  213 (370)
                      .++   ...+...     ...+..+      +++++|+..++.+                 .++.|..||..++.  ...
T Consensus        98 ~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~s~~~~~l~~~~-----------------~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           98 EAPEMPVYSVKGH-----KEIINAIDGIGGLGIGEGAPEIVTGS-----------------RDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             TSCSSCSEEECCC-----SSCEEEEEEESGGGCC-CCCEEEEEE-----------------TTSCEEEECTTSCSSCSEE
T ss_pred             CCCCccEEEEEec-----ccceEEEeeccccccCCCccEEEEEe-----------------CCCeEEEEeCCCCCCccee
Confidence            433   2322111     1234444      4567887666643                 34678888887654  232


Q ss_pred             EecCC----CCccceE----EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECC---CCCEEEEE
Q 017520          214 VADGF----YFANGVA----LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAP---DGTFWIAI  280 (370)
Q Consensus       214 ~~~~~----~~p~gi~----~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~---~G~lwv~~  280 (370)
                      +....    .....++    ++++++.++.+...+ |..|++...+.   ... .........+++++   +|++.++.
T Consensus       156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~v~~~~~~~~~~~~~~l~~~  230 (357)
T 3i2n_A          156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---RWE-TNIKNGVCSLEFDRKDISMNKLVAT  230 (357)
T ss_dssp             ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---EEE-EECSSCEEEEEESCSSSSCCEEEEE
T ss_pred             ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---eee-cCCCCceEEEEcCCCCCCCCEEEEE
Confidence            22111    1233444    678999888877767 99999865422   111 12233456678887   77654443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.16  E-value=7.4e-05  Score=73.54  Aligned_cols=168  Identities=14%  Similarity=0.089  Sum_probs=99.1

Q ss_pred             CcceEEcCCC--cEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEE-eCC----CceEEEc-CCC-eE
Q 017520           81 PEDASMDKNG--VIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIIC-DNA----NGLHKVS-EDG-VE  149 (370)
Q Consensus        81 P~~i~~d~~G--~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~-~~~----~gi~~~~-~~g-~~  149 (370)
                      ....++.++|  .+|++...+.+..++  +|+.+.+.....  . .+++++||+.++. ...    ..|+.++ .+| .+
T Consensus       112 ~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          112 MRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             BEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             ceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3344555554  466666556666777  677666654433  6 8899999986663 222    2478888 566 66


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceE---
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVA---  225 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~---  225 (370)
                      .+... .    ...+.++++|||+..++...               .....|+++|.++++.+ +..+. ..+..++   
T Consensus       189 ~l~~~-~----~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~  247 (582)
T 3o4h_A          189 VFDSG-E----GSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA  247 (582)
T ss_dssp             EECCS-S----CEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred             EeecC-C----CccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence            55321 1    24578899999974443221               12238999999988877 44332 2344566   


Q ss_pred             -----EccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          226 -----LSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       226 -----~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                           +++||..++.+...+ +..|++ +    +...   ...+....++++ +|.+++...
T Consensus       248 ~~~~~~spdg~~~~~~~~~g~~~l~~~-g----~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          248 ITWLGYLPDGRLAVVARREGRSAVFID-G----ERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             EEEEEECTTSCEEEEEEETTEEEEEET-T----EEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             ccceeEcCCCcEEEEEEcCCcEEEEEE-C----Ceec---cCCCceEEEEec-CCEEEEEEc
Confidence                 999996444444445 666665 3    2111   111223456777 887665543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.15  E-value=0.0015  Score=64.39  Aligned_cols=62  Identities=10%  Similarity=0.087  Sum_probs=41.3

Q ss_pred             eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC-----CceeceEEcCCCcEEEEeC------CCceEEEc-CCC
Q 017520           84 ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS-EDG  147 (370)
Q Consensus        84 i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~-----~p~~gl~~d~~G~L~v~~~------~~gi~~~~-~~g  147 (370)
                      ++++ +|.||+++.++.|+.+|  +|+...-.....     .......+. +|.+|++..      .+.|+.+| .+|
T Consensus       111 ~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG  186 (571)
T 2ad6_A          111 LAYG-AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTG  186 (571)
T ss_dssp             CEEE-TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTC
T ss_pred             cEEE-CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCC
Confidence            4554 67999999999999999  787654333222     111022333 688999875      34689999 678

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.14  E-value=2.7e-05  Score=71.74  Aligned_cols=184  Identities=7%  Similarity=-0.120  Sum_probs=104.3

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCe----EEEEEecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC-e-
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGT----WVNWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG-V-  148 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~----~~~~~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g-~-  148 (370)
                      ...++++.++|+ |.+++.+|.|..|+  +++    ...+........ ++++.++|++++ +...+.|..++ .++ . 
T Consensus        57 ~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  135 (377)
T 3dwl_C           57 IVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQENDW  135 (377)
T ss_dssp             CEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----C
T ss_pred             eEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCcccc
Confidence            356788888774 66677899999998  444    233333444566 899999987544 44444455555 333 1 


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC------------------e
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN------------------I  210 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~------------------~  210 (370)
                      ... ....+.....+..+++.++|++.++.+                 .++.|..||..++                  +
T Consensus       136 ~~~-~~~~~~h~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          136 WVS-KHLKRPLRSTILSLDWHPNNVLLAAGC-----------------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             CCC-EEECSSCCSCEEEEEECTTSSEEEEEE-----------------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             eee-eEeecccCCCeEEEEEcCCCCEEEEEe-----------------CCCEEEEEEEEecccCCCccccccccccchhh
Confidence            111 111221124678899999998666643                 2466777775321                  1


Q ss_pred             EEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCc--eeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          211 TTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGK--LETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       211 ~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~--~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      .............++++++++.++.+...+ |..|++...+...  ...+. ........++++++|++.++....
T Consensus       198 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~  272 (377)
T 3dwl_C          198 VCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVAAGYNY  272 (377)
T ss_dssp             EEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEEEESSS
T ss_pred             hhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEEEEcCC
Confidence            111112223356789999999787777777 8888887643210  11121 222234567888888877666544

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.13  E-value=0.0013  Score=59.91  Aligned_cols=175  Identities=7%  Similarity=0.033  Sum_probs=100.8

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEec---CCCceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEEEee
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKFI---DSQTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENFLSY  154 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~~---~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~~~~  154 (370)
                      .+|++++ +.+|+....|.|++-.| | .++.....   .+.+. ++++.+++++|++....++++-...|  ++.+...
T Consensus        83 ~~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~  160 (327)
T 2xbg_A           83 NSVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPR-LIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQE  160 (327)
T ss_dssp             EEEEEET-TEEEEEEETTEEEEESSTTSSCEECCCCTTCSSCEE-EEEEEETTEEEEEETTCCEEEESSTTSSEEEEECS
T ss_pred             EEEEecC-CeEEEEECCCeEEEECCCCCCceECccccCCCCCeE-EEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecC
Confidence            4577775 78898777788888764 4 35544322   23466 78877788999887555677766555  5554322


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeEEEEecC-CCCccceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNITTLVADG-FYFANGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~~~~~~~-~~~p~gi~~~~dg~~  232 (370)
                      ..    ..+..++++++|++|+...                  .+.+++-+.. ...++.+... -.....++++++++ 
T Consensus       161 ~~----~~~~~~~~~~~~~~~~~g~------------------~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-  217 (327)
T 2xbg_A          161 AI----GVMRNLNRSPSGEYVAVSS------------------RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-  217 (327)
T ss_dssp             CC----CCEEEEEECTTSCEEEEET------------------TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-
T ss_pred             CC----cceEEEEEcCCCcEEEEEC------------------CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-
Confidence            11    2456788889998887643                  3567776533 2334433221 12345677888887 


Q ss_pred             EEEEeCCc-EEEEEeCCCCCCceeeeccC-CCC--CCCceeECCCCCEEEEEecC
Q 017520          233 VVVCESWK-CRKYWLKGERKGKLETFAEN-LPG--APDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-~~g--~p~~i~~d~~G~lwv~~~~~  283 (370)
                      +|+....+ +++.+.++.+  +.+.+... ++.  ....+..++++.+|++...+
T Consensus       218 ~~~~~~~G~~~~s~~D~G~--tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g  270 (327)
T 2xbg_A          218 LWMIVNGGKIAFSDPDNSE--NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAG  270 (327)
T ss_dssp             EEEEETTTEEEEEETTEEE--EECCCBCTTSSCCSCEEEEEESSSSCEEEEESTT
T ss_pred             EEEEeCCceEEEecCCCCC--eeEeccCCcccCCcceEEEEecCCCEEEEEeCCC
Confidence            66666556 6554323211  11111100 111  01235567788999986544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.12  E-value=0.0023  Score=64.32  Aligned_cols=39  Identities=23%  Similarity=0.240  Sum_probs=27.8

Q ss_pred             eEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEe
Q 017520          318 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS  358 (370)
Q Consensus       318 g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs  358 (370)
                      +.+..+|. .|++++.|..+.+.....++.  +.+|+.|++.
T Consensus       498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y--~~~G~~~v~~  537 (677)
T 1kb0_A          498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTY--MVDGRQYVSV  537 (677)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             CcEEEEECCCCceeeeeeCCCCcccCCEEE--EeCCEEEEEE
Confidence            56899994 699999998877653333222  4788888875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.12  E-value=0.00017  Score=71.93  Aligned_cols=193  Identities=15%  Similarity=0.052  Sum_probs=104.8

Q ss_pred             CCcceEEcCCCcEEEEe--c-CC--eEEEEe-CCeEEEEEecCCC---------ceeceEEc--CCCcE--EEEeC-CCc
Q 017520           80 HPEDASMDKNGVIYTAT--R-DG--WIKRLQ-DGTWVNWKFIDSQ---------TLVGLTST--KEGHL--IICDN-ANG  139 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~--~-~g--~I~~~~-~g~~~~~~~~~~~---------p~~gl~~d--~~G~L--~v~~~-~~g  139 (370)
                      ...++++++++..|+..  . ++  .|+... ++..+.+......         .. ..++.  |||+.  +.+.. ...
T Consensus        25 ~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~SPDg~~~la~~~~~~~~  103 (662)
T 3azo_A           25 RPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGF-PWAGVPRPAGGPLLVFTHFGDQR  103 (662)
T ss_dssp             CCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCC-CEEEECCSSSSCEEEEEBTTTCC
T ss_pred             ccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCc-cceeeeecCCCeEEEEEECCCCe
Confidence            44556777665555554  1 33  344434 5555444322111         00 23233  78854  44433 246


Q ss_pred             eEEEcCC----C-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC-----
Q 017520          140 LHKVSED----G-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-----  208 (370)
Q Consensus       140 i~~~~~~----g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-----  208 (370)
                      |+.++.+    + .+.+...........+.+++++|||+ |+++.....        ..........|+++|.++     
T Consensus       104 l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~--------~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A          104 LYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFT--------GEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             EEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEEC--------SSSTTCEEEEEEEEETTSTTTTC
T ss_pred             EEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEeccc--------CCCCCCceeEEEEEECCCCcccc
Confidence            8888843    6 54443211000113456789999996 555532100        000001235799999987     


Q ss_pred             -CeEEEEe-cCCCCccceEEccCCCEEEEEeCC--------c-EEEEEeCC-CCCCceeeeccCCCCCCCceeECCCCCE
Q 017520          209 -NITTLVA-DGFYFANGVALSRDEDYVVVCESW--------K-CRKYWLKG-ERKGKLETFAENLPGAPDNINLAPDGTF  276 (370)
Q Consensus       209 -~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~--------~-l~~~~~~~-~~~~~~~~~~~~~~g~p~~i~~d~~G~l  276 (370)
                       ++.+.+. .+......++++|||+.|+++...        . |+.+++++ .+......+.....+....+.+++||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             6666665 444556778999999988776522        3 99999873 3222333333222233556788899997


Q ss_pred             EEEEe
Q 017520          277 WIAII  281 (370)
Q Consensus       277 wv~~~  281 (370)
                      ++...
T Consensus       256 ~~~~~  260 (662)
T 3azo_A          256 IVATD  260 (662)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.0006  Score=62.19  Aligned_cols=184  Identities=11%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             CCcceEEcCC--C-cEEEEecCCeEEEEe--CCeEE---EEEecCCCceeceEEcCC--CcEEE-EeCCCceEEEc-CCC
Q 017520           80 HPEDASMDKN--G-VIYTATRDGWIKRLQ--DGTWV---NWKFIDSQTLVGLTSTKE--GHLII-CDNANGLHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~--G-~l~v~~~~g~I~~~~--~g~~~---~~~~~~~~p~~gl~~d~~--G~L~v-~~~~~gi~~~~-~~g  147 (370)
                      ...++++.++  | .|++++.+|.|..|+  +++..   .+........ ++++.++  |.+++ +...+.|..++ .++
T Consensus        57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  135 (379)
T 3jrp_A           57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  135 (379)
T ss_dssp             CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCTT
T ss_pred             cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceE-EEEeCCCCCCCEEEEecCCCcEEEEecCCC
Confidence            3456777644  5 566777899999999  66532   2222344566 8999988  76555 44444566666 333


Q ss_pred             --eEEEEeecCCcccccccceEEcC-------------CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-
Q 017520          148 --VENFLSYVNGSKLRFANDVVEAS-------------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-  211 (370)
Q Consensus       148 --~~~~~~~~~g~~~~~~~~l~~d~-------------~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-  211 (370)
                        .......  + ....+..+++.+             ++.+.++.+                 .++.|..||..++.. 
T Consensus       136 ~~~~~~~~~--~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~~~~  195 (379)
T 3jrp_A          136 GTTSPIIID--A-HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQT  195 (379)
T ss_dssp             SCCCEEEEE--C-CTTCEEEEEECCCC----------CTTCEEEEEE-----------------TTSCEEEEEEETTTTE
T ss_pred             CceeeEEec--C-CCCceEEEEEcCccccccccccCCCCCCEEEEEe-----------------CCCeEEEEEecCCCcc
Confidence              2221111  1 113567788888             577665543                 346777887654321 


Q ss_pred             -E---EEecCCCCccceEEccC---CCEEEEEeCCc-EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCCEE-EEE
Q 017520          212 -T---LVADGFYFANGVALSRD---EDYVVVCESWK-CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFW-IAI  280 (370)
Q Consensus       212 -~---~~~~~~~~p~gi~~~~d---g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lw-v~~  280 (370)
                       .   .+.........++++++   ++.++.+...+ |..|++..............  .......++++++|++. ++.
T Consensus       196 ~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence             1   11122334578999999   78777777777 88898875421112222211  22334557788888644 444


Q ss_pred             ecCc
Q 017520          281 IKLD  284 (370)
Q Consensus       281 ~~~~  284 (370)
                      ..+.
T Consensus       276 ~dg~  279 (379)
T 3jrp_A          276 GDNK  279 (379)
T ss_dssp             SSSS
T ss_pred             CCCc
Confidence            5443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.10  E-value=0.0025  Score=59.70  Aligned_cols=149  Identities=9%  Similarity=0.007  Sum_probs=94.0

Q ss_pred             CCcceEEcCCC---cEEEEecCCeEEEEe--CCeEE----------------------------------------EE-E
Q 017520           80 HPEDASMDKNG---VIYTATRDGWIKRLQ--DGTWV----------------------------------------NW-K  113 (370)
Q Consensus        80 ~P~~i~~d~~G---~l~v~~~~g~I~~~~--~g~~~----------------------------------------~~-~  113 (370)
                      ...++++.+++   .+.+++.+|.|..|+  ++...                                        .+ .
T Consensus        95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (447)
T 3dw8_B           95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN  174 (447)
T ss_dssp             CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred             ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence            35678888876   466777899999888  32221                                        11 1


Q ss_pred             ecCCCceeceEEcCCCcEEEEeCCCceEEEc-C-CC--eEEEEee---cCCcccccccceEEcCCC-cEEEEeCCCCCCC
Q 017520          114 FIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E-DG--VENFLSY---VNGSKLRFANDVVEASDG-SLYFTVSSSKYLP  185 (370)
Q Consensus       114 ~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~-~g--~~~~~~~---~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~  185 (370)
                      ....... ++++.++|+++++..++.|..++ . .+  ...+...   ..+ ....+..++++++| ++.++.+      
T Consensus       175 ~h~~~v~-~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~s~~------  246 (447)
T 3dw8_B          175 AHTYHIN-SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEE-LTEVITAAEFHPNSCNTFVYSS------  246 (447)
T ss_dssp             CCSSCCC-EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGG-CCCCEEEEEECSSCTTEEEEEE------
T ss_pred             CCCcceE-EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccc-cCcceEEEEECCCCCcEEEEEe------
Confidence            1233456 89999999877766434455555 3 22  2222110   111 12357889999998 7766643      


Q ss_pred             ccceecccccCCCceEEEEeCCCCeE-----EEEecCCC------------CccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520          186 HEYCLDILEGKPHGQLLKYDPSSNIT-----TLVADGFY------------FANGVALSRDEDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       186 ~~~~~~~~~~~~~g~l~~~d~~t~~~-----~~~~~~~~------------~p~gi~~~~dg~~l~v~~~~~-l~~~~~~  247 (370)
                                 .++.|..||..+++.     ..+.....            ....++++++++.++.+.. + |..||+.
T Consensus       247 -----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          247 -----------SKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             -----------TTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             -----------CCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence                       357889999876653     33332221            5678999999998887777 7 8889886


Q ss_pred             C
Q 017520          248 G  248 (370)
Q Consensus       248 ~  248 (370)
                      .
T Consensus       315 ~  315 (447)
T 3dw8_B          315 M  315 (447)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.10  E-value=0.0053  Score=55.76  Aligned_cols=175  Identities=10%  Similarity=0.051  Sum_probs=102.3

Q ss_pred             CCcceEE-----cC-CCc-EEEEecCCeEEEEe-C-Ce--------EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eE
Q 017520           80 HPEDASM-----DK-NGV-IYTATRDGWIKRLQ-D-GT--------WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LH  141 (370)
Q Consensus        80 ~P~~i~~-----d~-~G~-l~v~~~~g~I~~~~-~-g~--------~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~  141 (370)
                      .-.++++     .+ +|. |..++.++.|..|+ . ++        ...+........ .+++++++.+.++....+ |.
T Consensus        23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~-~~~~~~~~~~l~s~s~D~~v~  101 (343)
T 2xzm_R           23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS-DLALSQENCFAISSSWDKTLR  101 (343)
T ss_dssp             CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEE-EEEECSSTTEEEEEETTSEEE
T ss_pred             hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceE-EEEECCCCCEEEEEcCCCcEE
Confidence            3466777     44 665 55666889999998 2 21        122223334456 899999998766554444 55


Q ss_pred             EEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--
Q 017520          142 KVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--  216 (370)
Q Consensus       142 ~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--  216 (370)
                      .++ +++  ...+...     ...+..+++.++|+..++.+                 .++.|..||...........  
T Consensus       102 lwd~~~~~~~~~~~~h-----~~~v~~v~~sp~~~~l~s~~-----------------~d~~i~~wd~~~~~~~~~~~~~  159 (343)
T 2xzm_R          102 LWDLRTGTTYKRFVGH-----QSEVYSVAFSPDNRQILSAG-----------------AEREIKLWNILGECKFSSAEKE  159 (343)
T ss_dssp             EEETTSSCEEEEEECC-----CSCEEEEEECSSTTEEEEEE-----------------TTSCEEEEESSSCEEEECCTTT
T ss_pred             EEECCCCcEEEEEcCC-----CCcEEEEEECCCCCEEEEEc-----------------CCCEEEEEeccCCceeeeeccc
Confidence            555 566  3333221     13578899999998666643                 34678888876433322221  


Q ss_pred             -CCCCccceEEccCC----------CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          217 -GFYFANGVALSRDE----------DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       217 -~~~~p~gi~~~~dg----------~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                       .......+++++++          ..+..+...+ |..|+...   .....+. ...+....++++++|++.++..
T Consensus       160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~~~~-~h~~~v~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF---QIRYTFK-AHESNVNHLSISPNGKYIATGG  232 (343)
T ss_dssp             SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT---EEEEEEE-CCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC---ceeEEEc-CccccceEEEECCCCCEEEEEc
Confidence             11234567777776          5566666666 88887322   1122222 2333355688899998655543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.09  E-value=0.0072  Score=57.09  Aligned_cols=149  Identities=13%  Similarity=0.118  Sum_probs=89.6

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEc--CCCcEEE-EeCCCceEEEc-CCC--eE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTST--KEGHLII-CDNANGLHKVS-EDG--VE  149 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d--~~G~L~v-~~~~~gi~~~~-~~g--~~  149 (370)
                      ....++++.+++.+.+++.+|.|..|+  +++.. .+........ ++++.  +++.+++ +..++.+..++ +++  ..
T Consensus       163 ~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~  241 (464)
T 3v7d_B          163 GGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  241 (464)
T ss_dssp             SCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred             cCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence            345678888888888888999999999  56543 3333444455 77776  5665444 44444455555 433  21


Q ss_pred             EEE-------------------eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520          150 NFL-------------------SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       150 ~~~-------------------~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                      ...                   ....+. ...+  ..++++|+..++.+                 .++.|..||..+++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v--~~~~~~~~~l~~~~-----------------~d~~i~vwd~~~~~  301 (464)
T 3v7d_B          242 DHGEEHDYPLVFHTPEENPYFVGVLRGH-MASV--RTVSGHGNIVVSGS-----------------YDNTLIVWDVAQMK  301 (464)
T ss_dssp             -----CCSSEEESCGGGCTTEEEEECCC-SSCE--EEEEEETTEEEEEE-----------------TTSCEEEEETTTTE
T ss_pred             cccccCCcceEeeccCCCeEEEEEccCc-cceE--EEEcCCCCEEEEEe-----------------CCCeEEEEECCCCc
Confidence            110                   000110 0111  23345565444432                 35789999988776


Q ss_pred             EEEEecC-CCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          211 TTLVADG-FYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       211 ~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ......+ ......++++++++.++.+...+ |..|++..
T Consensus       302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~  341 (464)
T 3v7d_B          302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN  341 (464)
T ss_dssp             EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence            5443332 34456889999999888888777 99999764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.08  E-value=0.00015  Score=67.47  Aligned_cols=180  Identities=10%  Similarity=0.096  Sum_probs=103.0

Q ss_pred             CCcceEEcCCCc--EEEE----------ecCCeEEEEe--CCe---EEEEEecCCCceeceEEcCCCcEEEE-eCCCceE
Q 017520           80 HPEDASMDKNGV--IYTA----------TRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLH  141 (370)
Q Consensus        80 ~P~~i~~d~~G~--l~v~----------~~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~  141 (370)
                      ...++++.++|.  +.++          +.+|.|..|+  +++   ............ +++++++|.++++ ...+.|.
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFN-DLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEE-EEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceE-EEEECCCCCeEEEEccCCeEE
Confidence            455677778775  4455          4577888888  332   111112334566 8999999975554 4444566


Q ss_pred             EEc-CC---CeEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe------
Q 017520          142 KVS-ED---GVENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------  210 (370)
Q Consensus       142 ~~~-~~---g~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~------  210 (370)
                      .++ .+   +.+.+.. ..+. ...+..+++.++ ++++++.+                 .++.|..||..+++      
T Consensus        93 vw~~~~~~~~~~~~~~-~~~h-~~~v~~~~~~~~~~~~l~s~~-----------------~dg~v~iwd~~~~~~~~~~~  153 (416)
T 2pm9_A           93 LYSTNEANNAINSMAR-FSNH-SSSVKTVKFNAKQDNVLASGG-----------------NNGEIFIWDMNKCTESPSNY  153 (416)
T ss_dssp             EECCSSTTSCCCEEEE-CCCS-SSCCCEEEECSSSTTBEEEEC-----------------SSSCEEBCBTTTTSSCTTTC
T ss_pred             Eeecccccccccchhh-ccCC-ccceEEEEEcCCCCCEEEEEc-----------------CCCeEEEEECCCCccccccc
Confidence            666 43   2111111 1221 236788999998 77666643                 34678888887654      


Q ss_pred             EEEEe----cCCCCccceEEccC-CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCC-----CCCCCceeECCCC-CEEE
Q 017520          211 TTLVA----DGFYFANGVALSRD-EDYVVVCESWK-CRKYWLKGERKGKLETFAENL-----PGAPDNINLAPDG-TFWI  278 (370)
Q Consensus       211 ~~~~~----~~~~~p~gi~~~~d-g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~-----~g~p~~i~~d~~G-~lwv  278 (370)
                      .....    ........++++++ ++.++.+...+ |..|++...+.  ...+....     ......++++++| ++++
T Consensus       154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          154 TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKE--VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEE--EEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCc--ceEEeccccccccCCceEEEEECCCCCCEEE
Confidence            21111    12234578999999 66555555556 99999765321  12221111     2335568888887 4444


Q ss_pred             EEe
Q 017520          279 AII  281 (370)
Q Consensus       279 ~~~  281 (370)
                      +..
T Consensus       232 ~~~  234 (416)
T 2pm9_A          232 TAT  234 (416)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.08  E-value=0.00047  Score=63.93  Aligned_cols=150  Identities=13%  Similarity=0.111  Sum_probs=96.8

Q ss_pred             cceEEcC-CCcE-EEEecCCeEEEEe-C--Ce-EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEE
Q 017520           82 EDASMDK-NGVI-YTATRDGWIKRLQ-D--GT-WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENF  151 (370)
Q Consensus        82 ~~i~~d~-~G~l-~v~~~~g~I~~~~-~--g~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~  151 (370)
                      .++++.+ ++++ ..++.+|.|..|+ .  ++ ...+....+... ++++.++|..+++....| |..++ .++  +..+
T Consensus       209 ~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~  287 (380)
T 3iz6_a          209 LSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY  287 (380)
T ss_dssp             EEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred             EEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence            4455654 5554 4566899999998 2  22 444544556677 999999998777655544 55556 566  3333


Q ss_pred             EeecC--CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----CCCCccce
Q 017520          152 LSYVN--GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----GFYFANGV  224 (370)
Q Consensus       152 ~~~~~--g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----~~~~p~gi  224 (370)
                      .....  ......+..++++++|++.++..                 .++.|+.||..+++......     .......+
T Consensus       288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l  350 (380)
T 3iz6_a          288 NREPDRNDNELPIVTSVAFSISGRLLFAGY-----------------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL  350 (380)
T ss_dssp             CCCCSSSCCSSCSCSEEEECSSSSEEEEEC-----------------TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEE-----------------CCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence            22111  11223477899999998777744                 35789999987665543321     12345789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ++++||+.|+.+...+ |..|++.+.
T Consensus       351 ~~s~dg~~l~sgs~D~~i~iW~~~~~  376 (380)
T 3iz6_a          351 GLSSDGSALCTGSWDKNLKIWAFSGH  376 (380)
T ss_dssp             EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred             EECCCCCEEEEeeCCCCEEEEecCCC
Confidence            9999999777666666 888887653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.08  E-value=0.0032  Score=56.44  Aligned_cols=181  Identities=14%  Similarity=0.127  Sum_probs=99.0

Q ss_pred             CCcCCCcceEEcCC-Cc-EEEEecCCeEEEEe--CCe------EEEEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc
Q 017520           76 GSVNHPEDASMDKN-GV-IYTATRDGWIKRLQ--DGT------WVNWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS  144 (370)
Q Consensus        76 ~~~~~P~~i~~d~~-G~-l~v~~~~g~I~~~~--~g~------~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~  144 (370)
                      |.-..-.+|++.++ ++ |..++.||.|..|+  .++      ...+......+. +++++++|++.++....+ +..++
T Consensus        36 GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~~  114 (340)
T 4aow_A           36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLWD  114 (340)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEEe
Confidence            44345678899876 55 45567899999998  322      122222344566 899999998666544444 44455


Q ss_pred             -CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-C-CCC
Q 017520          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G-FYF  220 (370)
Q Consensus       145 -~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~-~~~  220 (370)
                       ..+ ....... .   ......+...+++...++.+                 .++.+..+|........... . ...
T Consensus       115 ~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~s~s-----------------~d~~~~~~d~~~~~~~~~~~~~~~~~  173 (340)
T 4aow_A          115 LTTGTTTRRFVG-H---TKDVLSVAFSSDNRQIVSGS-----------------RDKTIKLWNTLGVCKYTVQDESHSEW  173 (340)
T ss_dssp             TTTTEEEEEEEC-C---SSCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTSCEEEEECSSSCSSC
T ss_pred             ecccceeeeecC-C---CCceeEEEEeecCccceeec-----------------CCCeEEEEEeCCCceEEEEeccccCc
Confidence             333 2221111 1   12344566677776555532                 34667778776443332221 1 223


Q ss_pred             ccceEEccCCCE-EEE-EeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          221 ANGVALSRDEDY-VVV-CESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       221 p~gi~~~~dg~~-l~v-~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ...+++++++.. +++ +...+ |..|++...+.  ...+ ....+....++++++|++.++..
T Consensus       174 v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~--~~~~-~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL--KTNH-IGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             EEEEEECSCSSSCEEEEEETTSCEEEEETTTTEE--EEEE-CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccceEEccCCCCcEEEEEcCCCEEEEEECCCCce--eeEe-cCCCCcEEEEEECCCCCEEEEEe
Confidence            355677765432 333 34444 88888764321  1222 12233345678899998666543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.08  E-value=0.00032  Score=74.16  Aligned_cols=143  Identities=10%  Similarity=0.101  Sum_probs=88.0

Q ss_pred             ceEEcCCC-cEEEEecCCeEE-EEe--CCeEEEEEecCCCceeceEEcCCCcE-EEEeCCCceEEEc-CCC-eEEEEeec
Q 017520           83 DASMDKNG-VIYTATRDGWIK-RLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLSYV  155 (370)
Q Consensus        83 ~i~~d~~G-~l~v~~~~g~I~-~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g-~~~~~~~~  155 (370)
                      ++++. || .+++++.++.|+ .++  .++...+......+. .+++++||+. +.+.....++.++ .+| ...+....
T Consensus       342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~  419 (1045)
T 1k32_A          342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR  419 (1045)
T ss_dssp             EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred             eeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCC
Confidence            34555 55 344444466788 777  445554443334567 8999999974 4455445688888 667 55443221


Q ss_pred             CCcccccccceEEcCCCcEE-EEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEE
Q 017520          156 NGSKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVV  234 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~-v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~  234 (370)
                      .    ..+..++++|||+.. ++.....+..        .....+.|+.+|.++++...+.........+++++||+.++
T Consensus       420 ~----~~v~~~~~SpDG~~la~~~~~~~~~~--------~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~  487 (1045)
T 1k32_A          420 E----AMITDFTISDNSRFIAYGFPLKHGET--------DGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLY  487 (1045)
T ss_dssp             S----SCCCCEEECTTSCEEEEEEEECSSTT--------CSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEE
T ss_pred             C----CCccceEECCCCCeEEEEecCccccc--------cCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEE
Confidence            1    245788999999743 3322100000        00123579999998887665555555567789999999888


Q ss_pred             EEeCC
Q 017520          235 VCESW  239 (370)
Q Consensus       235 v~~~~  239 (370)
                      +....
T Consensus       488 ~~s~~  492 (1045)
T 1k32_A          488 YLSYR  492 (1045)
T ss_dssp             EEESC
T ss_pred             EEecc
Confidence            87753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=98.06  E-value=0.00044  Score=70.47  Aligned_cols=182  Identities=14%  Similarity=0.125  Sum_probs=107.8

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEE---EEEecCCCceeceEEcCC--CcEEEEeCC-CceEEEc-CCC-
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV---NWKFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~---~~~~~~~~p~~gl~~d~~--G~L~v~~~~-~gi~~~~-~~g-  147 (370)
                      ....+++++++|. +.+++.+|.|..|+  ++...   .+....+... ++++.++  |+++++... +.|..++ .++ 
T Consensus        10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~   88 (753)
T 3jro_A           10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENGR   88 (753)
T ss_dssp             CCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEEEEETTE
T ss_pred             ceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            3456677887775 66777899999998  34332   2223344566 8999876  775554444 4455566 455 


Q ss_pred             eEEEEeecCCcccccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe---EEEEecCCCCcc
Q 017520          148 VENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFAN  222 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~p~  222 (370)
                      ....... .+. ...+..+++.++  |++.++.+                 .++.|..||..++.   ...+........
T Consensus        89 ~~~~~~~-~~h-~~~V~~v~~sp~~~~~~l~sgs-----------------~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A           89 WSQIAVH-AVH-SASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             EEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             ccccccc-cCC-CCCeEEEEECCCCCCCEEEEEe-----------------CCCcEEEEEeecCCCcceeEeecCCCceE
Confidence            3332221 111 246788999998  87666643                 35788888876552   222223334456


Q ss_pred             ceEEcc-------------CCCEEEEEeCCc-EEEEEeCCCCCC-ceeeeccCCCCCCCceeECCC---CCEEEEE
Q 017520          223 GVALSR-------------DEDYVVVCESWK-CRKYWLKGERKG-KLETFAENLPGAPDNINLAPD---GTFWIAI  280 (370)
Q Consensus       223 gi~~~~-------------dg~~l~v~~~~~-l~~~~~~~~~~~-~~~~~~~~~~g~p~~i~~d~~---G~lwv~~  280 (370)
                      .+++++             +++.++.+...+ |..|++...... ..........+....+++.++   |++.++.
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~  225 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASV  225 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEE
T ss_pred             EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEE
Confidence            788888             577777777777 889988654211 111111122333556778888   6655544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.06  E-value=0.00073  Score=61.65  Aligned_cols=176  Identities=11%  Similarity=0.133  Sum_probs=98.6

Q ss_pred             cCCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCceeceEEcC----CC----cEEEEeCC---Cce--EEEc-CCC-eE
Q 017520           87 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTK----EG----HLIICDNA---NGL--HKVS-EDG-VE  149 (370)
Q Consensus        87 d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~----~G----~L~v~~~~---~gi--~~~~-~~g-~~  149 (370)
                      |+...+++++ ..++|+.++ +|+...... .++++ ++.+-+    .|    .+++++..   +.|  +.++ .++ ++
T Consensus        37 dp~~s~ii~t~k~~gL~Vydl~G~~l~~~~-~g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~  114 (355)
T 3amr_A           37 TPQNSKLITTNKKSGLVVYSLDGKMLHSYN-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (355)
T ss_dssp             CGGGCEEEEEETTTEEEEEETTSCEEEEEC-CSCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEE
T ss_pred             CCCccEEEEEcCCCCEEEEcCCCcEEEEcc-CCCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCcee
Confidence            4455667776 677899999 887665543 36666 655443    12    23555544   234  4456 344 55


Q ss_pred             EEEee--cCCcccccccceEE--cCC-Cc--EEEEeCCCCCCCccceecccccCCCceEEEEeC---CCCeE-----EEE
Q 017520          150 NFLSY--VNGSKLRFANDVVE--ASD-GS--LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP---SSNIT-----TLV  214 (370)
Q Consensus       150 ~~~~~--~~g~~~~~~~~l~~--d~~-G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~---~t~~~-----~~~  214 (370)
                      .+...  ..+..+..+.+++.  ++. |.  +|+++.                  ++.+..|+.   ..+++     +. 
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k------------------~G~~~q~~l~~~~~g~~~~~lVR~-  175 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK------------------EGEFEQYELKADKNGYISGKKVRA-  175 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECS------------------SSEEEEEEEEECTTSCEEEEEEEE-
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECC------------------CCeEEEEEEEeCCCCcccceEEEE-
Confidence            44221  00122367888888  764 54  666643                  255555433   22212     22 


Q ss_pred             ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeee--c--cCCCCCCCceeE--CCCCC-EEEEEecC
Q 017520          215 ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETF--A--ENLPGAPDNINL--APDGT-FWIAIIKL  283 (370)
Q Consensus       215 ~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~--~--~~~~g~p~~i~~--d~~G~-lwv~~~~~  283 (370)
                      +.-...+.|+++|+....||+++... ||+|+.+.....+.+.+  .  ..+..-+.||++  .++|. ++++..++
T Consensus       176 f~lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          176 FKMNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             ecCCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            22235788999999888899999987 99999653321111111  1  112234677887  45554 55555554

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.05  E-value=0.0029  Score=57.27  Aligned_cols=148  Identities=9%  Similarity=0.060  Sum_probs=88.6

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCe--EEEEE-e--cCCCceeceEEcCCCcEEEEeCCCc-eEEEcC-CC---
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT--WVNWK-F--IDSQTLVGLTSTKEGHLIICDNANG-LHKVSE-DG---  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~--~~~~~-~--~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~~-~g---  147 (370)
                      .-.+++++++ .|..++.+|.|..++  .+.  ..... .  ...... ++++.++|+++++....+ |..++. .+   
T Consensus        16 ~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~~   93 (330)
T 2hes_X           16 KIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESADR   93 (330)
T ss_dssp             CEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred             ceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence            3456777766 667777899999998  332  22222 1  233456 899999998766544444 444442 11   


Q ss_pred             ---eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCC-C---eE-EEEecCCC
Q 017520          148 ---VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS-N---IT-TLVADGFY  219 (370)
Q Consensus       148 ---~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t-~---~~-~~~~~~~~  219 (370)
                         .+.+ ....+. ...+..++++++|+..++.+                 .++.|..+|... +   +. ..+.....
T Consensus        94 ~~~~~~~-~~~~~h-~~~V~~v~~sp~g~~las~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           94 TFEMDLL-AIIEGH-ENEVKGVAWSNDGYYLATCS-----------------RDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             -CCCEEE-EEEC-----CEEEEEECTTSCEEEEEE-----------------TTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             cccceeE-EEEcCC-CCcEEEEEECCCCCEEEEEe-----------------CCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence               1111 111221 23678899999998777643                 356788888732 2   22 22222334


Q ss_pred             CccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          220 FANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      ....++++|+++.++.+...+ |..|+...
T Consensus       155 ~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~  184 (330)
T 2hes_X          155 DVKHVIWHPSEALLASSSYDDTVRIWKDYD  184 (330)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             ceEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            467899999999777777777 77777643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.04  E-value=0.0015  Score=59.07  Aligned_cols=93  Identities=10%  Similarity=0.061  Sum_probs=58.7

Q ss_pred             CCCcceEEcCC---C-cEEEEecCCeEEEEe--C-CeE--EEEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC
Q 017520           79 NHPEDASMDKN---G-VIYTATRDGWIKRLQ--D-GTW--VNWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG  147 (370)
Q Consensus        79 ~~P~~i~~d~~---G-~l~v~~~~g~I~~~~--~-g~~--~~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g  147 (370)
                      ....++++.++   | .|.+++.+|.|..|+  + +..  ..+....+... ++++.++|+++++ ..++.|..++ .++
T Consensus        40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~~  118 (368)
T 3mmy_A           40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSSN  118 (368)
T ss_dssp             SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCCC
Confidence            45678899887   4 566777899999999  3 443  33444455667 9999999975554 4344466666 555


Q ss_pred             -eEEEEeecCCcccccccceEE--cCCCcEEEE
Q 017520          148 -VENFLSYVNGSKLRFANDVVE--ASDGSLYFT  177 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~--d~~G~l~v~  177 (370)
                       ...+... .    ..+..+++  +++|+++++
T Consensus       119 ~~~~~~~~-~----~~v~~~~~~~~~~~~~l~~  146 (368)
T 3mmy_A          119 QAIQIAQH-D----APVKTIHWIKAPNYSCVMT  146 (368)
T ss_dssp             EEEEEEEC-S----SCEEEEEEEECSSCEEEEE
T ss_pred             Cceeeccc-c----CceEEEEEEeCCCCCEEEE
Confidence             3332221 1    24667777  777765554

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.03  E-value=0.0016  Score=59.27  Aligned_cols=174  Identities=10%  Similarity=0.046  Sum_probs=100.4

Q ss_pred             cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEc-------CCCcEEEEeCCCceEEEc-CCC--eEEEEeecCC
Q 017520           91 VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTST-------KEGHLIICDNANGLHKVS-EDG--VENFLSYVNG  157 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d-------~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g  157 (370)
                      .+..|..+|.|..|+  +++. ..+.  ...+. .+.+.       .|+.+.+-+....+..++ .++  +..+..   +
T Consensus        50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~-~~~~~~~~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~---~  123 (343)
T 3lrv_A           50 VCMCRCEDGALHFTQLKDSKTITTIT--TPNPR-TGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV---D  123 (343)
T ss_dssp             EEEEEEETTEEEEEEESSSSCEEEEE--EECCC-TTCCCCSEEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC---C
T ss_pred             EEEEECCCCcEEEEECCCCcEEEEEe--cCCce-eeeeCCceEEecCCCeEEEEEccCceEEeecCCcceeEEeec---C
Confidence            566777999999999  5543 3322  12223 43333       344444444333343344 233  222211   1


Q ss_pred             cccccccceEEcC--CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEE
Q 017520          158 SKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYV  233 (370)
Q Consensus       158 ~~~~~~~~l~~d~--~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l  233 (370)
                      . ...+..+++++  +|+++++.+                 .++.|..||..+++.......  ......+++++|++.+
T Consensus       124 ~-~~~v~~~~~~~~~~~~~l~s~s-----------------~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~l  185 (343)
T 3lrv_A          124 S-ANEIIYMYGHNEVNTEYFIWAD-----------------NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL  185 (343)
T ss_dssp             C-SSCEEEEECCC---CCEEEEEE-----------------TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEE
T ss_pred             C-CCCEEEEEcCCCCCCCEEEEEe-----------------CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEE
Confidence            0 12477889999  898777643                 357899999887776443322  2246789999999966


Q ss_pred             EEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHH
Q 017520          234 VVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMK  289 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~  289 (370)
                      ..+...+ |..||+...+.- ...+.....+....++++++|++.++...+...++|
T Consensus       186 asg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd  241 (343)
T 3lrv_A          186 ALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFD  241 (343)
T ss_dssp             EEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEE
Confidence            6666666 999998754321 022221133445678899999877666555444444

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.03  E-value=0.0003  Score=74.36  Aligned_cols=171  Identities=9%  Similarity=0.041  Sum_probs=104.8

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe-C-CeEEEEEe-----------cCCCceeceEEc-CCCc-EEEEeCCCceEEEc-C
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ-D-GTWVNWKF-----------IDSQTLVGLTST-KEGH-LIICDNANGLHKVS-E  145 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~-~-g~~~~~~~-----------~~~~p~~gl~~d-~~G~-L~v~~~~~gi~~~~-~  145 (370)
                      ..+++++||...+...++.|+.++ + +.+..+..           ....+. +++++ +||+ |.++. ...++.++ .
T Consensus       248 ~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~-~~~~S~pdG~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          248 YPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKF-AEDFSPLDGDLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             CEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGG-EEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred             ceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccc-eeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence            345777777633333577888887 3 33332211           111356 89999 9996 44444 55677777 4


Q ss_pred             CC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEE-EEeCCCCeEEEEecCCCCcc
Q 017520          146 DG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLL-KYDPSSNITTLVADGFYFAN  222 (370)
Q Consensus       146 ~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~-~~d~~t~~~~~~~~~~~~p~  222 (370)
                      ++ ...+.    ......+..+++. ||+ ++++..                  ...++ .+|.++++.+.+........
T Consensus       326 ~~~~~~~~----~~~~~~~~~~~~s-dg~~l~~~s~------------------~~~l~~~~d~~~~~~~~l~~~~~~~~  382 (1045)
T 1k32_A          326 GTYVLKVP----EPLRIRYVRRGGD-TKVAFIHGTR------------------EGDFLGIYDYRTGKAEKFEENLGNVF  382 (1045)
T ss_dssp             SSBEEECS----CCSCEEEEEECSS-SEEEEEEEET------------------TEEEEEEEETTTCCEEECCCCCCSEE
T ss_pred             CCceEEcc----CCCcceEEeeeEc-CCCeEEEEEC------------------CCceEEEEECCCCCceEecCCcccee
Confidence            45 33321    1111145567777 775 444321                  35788 89988777666553334567


Q ss_pred             ceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          223 GVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      .++++|||+.++++...+ |+.+++++.   +.........+....+++++||+..+..
T Consensus       383 ~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v~~~~~SpDG~~la~~  438 (1045)
T 1k32_A          383 AMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMITDFTISDNSRFIAYG  438 (1045)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             eeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCccceEECCCCCeEEEE
Confidence            899999999888887776 999998654   2333332333345678999999855443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.02  E-value=0.0033  Score=57.15  Aligned_cols=179  Identities=13%  Similarity=0.130  Sum_probs=101.8

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEeC-C-eEEEEEecC---C-CceeceEEcCCCcEEEEeCCCceEEEcCCC--eEEE
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQD-G-TWVNWKFID---S-QTLVGLTSTKEGHLIICDNANGLHKVSEDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~~-g-~~~~~~~~~---~-~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g--~~~~  151 (370)
                      ...+|++..++.+|+....|.|++-.+ | .++......   . ... +|++++ +++|++....+|++-...|  ++.+
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i~~s~DgG~tW~~~~~~~~~~~~~~~-~i~~~~-~~~~~~g~~g~i~~S~DgG~tW~~~  114 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATLMETRDGGQTWEPRTLVLDHSDYRFN-SVSFQG-NEGWIVGEPPIMLHTTDGGQSWSQI  114 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEEEEESSTTSSCEECCCCCSCCCCEEE-EEEEET-TEEEEEEETTEEEEESSTTSSCEEC
T ss_pred             cEEEEEECCCCcEEEEcCCCeEEEeCCCCCCCeECCCCCCCCCccEE-EEEecC-CeEEEEECCCeEEEECCCCCCceEC
Confidence            456677777788898777888888763 4 355443211   2 234 788875 7888876555566644445  5543


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg  230 (370)
                      ... ...+ ..+..+++.+++++|+...                  .+.|++-+-....++.+.... ....++++++++
T Consensus       115 ~~~-~~~~-~~~~~i~~~~~~~~~~~~~------------------~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~  174 (327)
T 2xbg_A          115 PLD-PKLP-GSPRLIKALGNGSAEMITN------------------VGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSG  174 (327)
T ss_dssp             CCC-TTCS-SCEEEEEEEETTEEEEEET------------------TCCEEEESSTTSSEEEEECSCCCCEEEEEECTTS
T ss_pred             ccc-cCCC-CCeEEEEEECCCCEEEEeC------------------CccEEEEcCCCCCCEEeecCCCcceEEEEEcCCC
Confidence            221 1111 2345677777788888743                  256777654444555544322 234567888888


Q ss_pred             CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          231 DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      + +|+....+ +++-+-.+..  ..+......+.....++++++|++|+....+
T Consensus       175 ~-~~~~g~~G~~~~S~d~gG~--tW~~~~~~~~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          175 E-YVAVSSRGSFYSTWEPGQT--AWEPHNRTTSRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             C-EEEEETTSSEEEEECTTCS--SCEEEECCSSSCEEEEEECTTSCEEEEETTT
T ss_pred             c-EEEEECCCcEEEEeCCCCC--ceeECCCCCCCccceeEECCCCCEEEEeCCc
Confidence            7 44444444 7776522111  2222211112223457778889999887554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.01  E-value=0.00049  Score=63.44  Aligned_cols=195  Identities=13%  Similarity=0.072  Sum_probs=97.2

Q ss_pred             CcceEEcCCCcE-EEE-ec--CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEE
Q 017520           81 PEDASMDKNGVI-YTA-TR--DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENF  151 (370)
Q Consensus        81 P~~i~~d~~G~l-~v~-~~--~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~  151 (370)
                      +.++++.+||.. .+. +.  +..|+.++  +++...+.........++++++||+ |+.+.....|+.++ .++ .+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            556688888863 333 32  34788888  5665554333333230378899996 54555445688888 555 4444


Q ss_pred             EeecCCcccccccceEEcCCC---cEEEEeCCCCCCCccceeccc---ccCCCceEEEEeCCCCeEEEEecCCCCccceE
Q 017520          152 LSYVNGSKLRFANDVVEASDG---SLYFTVSSSKYLPHEYCLDIL---EGKPHGQLLKYDPSSNITTLVADGFYFANGVA  225 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G---~l~v~d~~~~~~~~~~~~~~~---~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~  225 (370)
                      .....+. ...-..|++....   .+|....  .+....-...+.   .......|+.+|.++++.+.+.........++
T Consensus       118 ~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~--~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~  194 (396)
T 3c5m_A          118 YTVDEEW-KGYGTWVANSDCTKLVGIEILKR--DWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPI  194 (396)
T ss_dssp             EECCTTE-EEEEEEEECTTSSEEEEEEEEGG--GCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEE
T ss_pred             Eeccccc-CCCCCEEEeccCCcccccccccc--ccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccce
Confidence            3321110 0000011111000   0010000  000000000000   01244689999998888776665445566788


Q ss_pred             Ecc-CCCEEEEEeCC------c-EEEEEeCCCCCCceeeeccCCCC-CCCceeECCCCC-EEEEEe
Q 017520          226 LSR-DEDYVVVCESW------K-CRKYWLKGERKGKLETFAENLPG-APDNINLAPDGT-FWIAII  281 (370)
Q Consensus       226 ~~~-dg~~l~v~~~~------~-l~~~~~~~~~~~~~~~~~~~~~g-~p~~i~~d~~G~-lwv~~~  281 (370)
                      +++ |++.+++....      . |+.+++++..   ...+....+. .+..+++++||+ |+.+..
T Consensus       195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~  257 (396)
T 3c5m_A          195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN---VRKIKEHAEGESCTHEFWIPDGSAMAYVSY  257 (396)
T ss_dssp             EETTEEEEEEEEECSCSSSCSCCCEEEETTSCC---CEESSCCCTTEEEEEEEECTTSSCEEEEEE
T ss_pred             ECCCCCCEEEEEecCCCCCCCceEEEEECCCCc---eeEeeccCCCccccceEECCCCCEEEEEec
Confidence            999 77756554321      2 8888876542   2222211111 233467899996 555543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.01  E-value=1.9e-05  Score=73.45  Aligned_cols=139  Identities=15%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             EEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEe-CCCceEEEc-CCC-eEEEEeecCCcc
Q 017520           85 SMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICD-NANGLHKVS-EDG-VENFLSYVNGSK  159 (370)
Q Consensus        85 ~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~-~~~gi~~~~-~~g-~~~~~~~~~g~~  159 (370)
                      +++ ++.||+++.+|.|+.++  +|+...-... +... +..+..+|.+|++. ..+.++.++ .+| .........+..
T Consensus         6 ~v~-~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~   82 (369)
T 2hz6_A            6 TLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL   82 (369)
T ss_dssp             --C-TTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred             eee-CCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence            554 68999999999999999  7876543333 3333 33333567777764 345688888 577 322111100000


Q ss_pred             cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC
Q 017520          160 LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       160 ~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      .  ....++..++.+|++.                  .++.|+.+|.++++......   .......+++++.+|++...
T Consensus        83 ~--~~sp~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~---~~~~~~~~p~~~~v~~~~~d  139 (369)
T 2hz6_A           83 V--QASPCRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLS---SAFADSLSPSTSLLYLGRTE  139 (369)
T ss_dssp             H--TTCSCC-----CCCCE------------------EEEEEEEECCC-------------------------EEEEEEE
T ss_pred             c--ccCceEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEec---CCCcccccccCCEEEEEecC
Confidence            0  0011222356777653                  23679999998876543221   11223445577778888766


Q ss_pred             c-EEEEEeCCC
Q 017520          240 K-CRKYWLKGE  249 (370)
Q Consensus       240 ~-l~~~~~~~~  249 (370)
                      + |+.+|.++.
T Consensus       140 g~v~a~d~~tG  150 (369)
T 2hz6_A          140 YTITMYDTKTR  150 (369)
T ss_dssp             EEEECCCSSSS
T ss_pred             CEEEEEECCCC
Confidence            6 899987654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.00  E-value=0.002  Score=64.76  Aligned_cols=109  Identities=13%  Similarity=0.178  Sum_probs=67.0

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCC------------CceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDS------------QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~------------~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      +|.||+++.++.|+.+|  +|+...-.....            ... +++++ ++.||++.....|+.+| ++| ...-.
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~a~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  154 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCC-CceEE-CCEEEEEcCCCEEEEEECCCCCEEeee
Confidence            78999999888999999  787654332221            113 56665 68999998777899999 688 33322


Q ss_pred             eecCCc-c-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          153 SYVNGS-K-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       153 ~~~~g~-~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      ...... . ........+. +|.+|++....++            ...+.|+.+|.++++..
T Consensus       155 ~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          155 NTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEY------------GVRGYITAYDAETGERK  203 (677)
T ss_dssp             ETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             cCCcCcCcCcccccCcEEE-CCEEEEEeccccc------------CCCCEEEEEECCCCcEE
Confidence            211010 0 0111112332 5789988653211            12578999999888764

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.0038  Score=56.44  Aligned_cols=149  Identities=7%  Similarity=-0.002  Sum_probs=87.4

Q ss_pred             CCcceEEcCCCcEE-EEecCCeEEEEe-CC--------e-EEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEcC-C
Q 017520           80 HPEDASMDKNGVIY-TATRDGWIKRLQ-DG--------T-WVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSE-D  146 (370)
Q Consensus        80 ~P~~i~~d~~G~l~-v~~~~g~I~~~~-~g--------~-~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~-~  146 (370)
                      ...++++.++|.+. .++.++.|..|+ ..        + ...+....+... +++++++|+++++... +.|..++. .
T Consensus        60 ~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~~  138 (330)
T 2hes_X           60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETDE  138 (330)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred             CEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEeccC
Confidence            45678899888654 566889999887 21        1 112223344566 8999999986665444 44555552 2


Q ss_pred             -C--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE---EEEecCCCC
Q 017520          147 -G--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVADGFYF  220 (370)
Q Consensus       147 -g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~~~~~~  220 (370)
                       +  .+.+. ...+. ...++.+++.|+|++.++.+                 .++.|..+|..++..   ..+......
T Consensus       139 ~~~~~~~~~-~~~~h-~~~v~~v~~~p~~~~l~s~s-----------------~D~~i~iW~~~~~~~~~~~~~~~h~~~  199 (330)
T 2hes_X          139 SGEEYECIS-VLQEH-SQDVKHVIWHPSEALLASSS-----------------YDDTVRIWKDYDDDWECVAVLNGHEGT  199 (330)
T ss_dssp             TCCCCEEEE-EECCC-SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEEEETTEEEEEEEECCCSSC
T ss_pred             CCCCeEEEE-EeccC-CCceEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCCeeEEEEccCCCCc
Confidence             2  22221 11221 13578899999998777754                 346677777654422   222222334


Q ss_pred             ccceEEccC--CCEEEEEeCCc-EEEEEeCC
Q 017520          221 ANGVALSRD--EDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       221 p~gi~~~~d--g~~l~v~~~~~-l~~~~~~~  248 (370)
                      ...++++++  +..+..+...+ |..|++.+
T Consensus       200 v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          200 VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             EEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             EEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence            567889998  55566666666 77777653

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=97.95  E-value=0.0022  Score=58.98  Aligned_cols=148  Identities=8%  Similarity=0.036  Sum_probs=88.2

Q ss_pred             CCCcceEEcC-CCc-EEEEecCCeEEEEe--CCeE-EEEE-------------ecCCCceeceEEcC-CCcEEEE-eCCC
Q 017520           79 NHPEDASMDK-NGV-IYTATRDGWIKRLQ--DGTW-VNWK-------------FIDSQTLVGLTSTK-EGHLIIC-DNAN  138 (370)
Q Consensus        79 ~~P~~i~~d~-~G~-l~v~~~~g~I~~~~--~g~~-~~~~-------------~~~~~p~~gl~~d~-~G~L~v~-~~~~  138 (370)
                      ....++++.+ +|. |.+++.+|.|..|+  +++. ..+.             ....... ++++.+ +++++++ ...+
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d~  122 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFDK  122 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETTS
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCCC
Confidence            3567789988 776 45666899999999  3321 1111             1233456 899998 5655554 4344


Q ss_pred             ceEEEc-CCC-eEEEEeecCCcccccccceEEcC---CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE
Q 017520          139 GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS---DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (370)
Q Consensus       139 gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~---~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~  213 (370)
                      .|..++ .++ ....... .    ..+..+.+.+   ++.+.++..                 .++.|..||..+++...
T Consensus       123 ~i~iwd~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~v~~~d~~~~~~~~  180 (408)
T 4a11_B          123 TLKVWDTNTLQTADVFNF-E----ETVYSHHMSPVSTKHCLVAVGT-----------------RGPKVQLCDLKSGSCSH  180 (408)
T ss_dssp             EEEEEETTTTEEEEEEEC-S----SCEEEEEECSSCSSCCEEEEEE-----------------SSSSEEEEESSSSCCCE
T ss_pred             eEEEeeCCCCccceeccC-C----CceeeeEeecCCCCCcEEEEEc-----------------CCCeEEEEeCCCcceee
Confidence            466666 555 2222221 1    2345566665   344555432                 34778899987665433


Q ss_pred             Eec-CCCCccceEEccCCCE-EEEEeCCc-EEEEEeCCC
Q 017520          214 VAD-GFYFANGVALSRDEDY-VVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       214 ~~~-~~~~p~gi~~~~dg~~-l~v~~~~~-l~~~~~~~~  249 (370)
                      ... .......++++++++. ++.+...+ |..|++...
T Consensus       181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            333 3344578999999985 55666666 899987543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.94  E-value=0.0033  Score=63.45  Aligned_cols=182  Identities=8%  Similarity=0.052  Sum_probs=98.5

Q ss_pred             ceEEcCCCcE-EEE-ecCC----eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCc--------------
Q 017520           83 DASMDKNGVI-YTA-TRDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG--------------  139 (370)
Q Consensus        83 ~i~~d~~G~l-~v~-~~~g----~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~g--------------  139 (370)
                      ++++.+||+. .++ +..|    .|+.++  +|+............ ++++.+||+ |+.+.....              
T Consensus       129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~  207 (710)
T 2xdw_A          129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (710)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccCCC
Confidence            4678888863 333 3333    788888  666544322222245 799999996 666554333              


Q ss_pred             --eEEEc-CCC-e--EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC----
Q 017520          140 --LHKVS-EDG-V--ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS----  208 (370)
Q Consensus       140 --i~~~~-~~g-~--~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t----  208 (370)
                        |++++ .++ .  ..+... ... .....++.+++||+ |.++....             ......|+.+|.++    
T Consensus       208 ~~v~~~~l~t~~~~~~~v~~~-~~~-~~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~  272 (710)
T 2xdw_A          208 QKLYYHVLGTDQSEDILCAEF-PDE-PKWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQESNG  272 (710)
T ss_dssp             CEEEEEETTSCGGGCEEEECC-TTC-TTCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSSSS
T ss_pred             CEEEEEECCCCcccceEEecc-CCC-CeEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECcccccc
Confidence              77777 344 2  222221 111 12345788999996 55543210             00145788898765    


Q ss_pred             --C--eEEEEecCCCCccceEEccCCCEEEEEeCCc-----EEEEEeCCCCCCceeeeccCCC-CCCCceeECCCCCEEE
Q 017520          209 --N--ITTLVADGFYFANGVALSRDEDYVVVCESWK-----CRKYWLKGERKGKLETFAENLP-GAPDNINLAPDGTFWI  278 (370)
Q Consensus       209 --~--~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-----l~~~~~~~~~~~~~~~~~~~~~-g~p~~i~~d~~G~lwv  278 (370)
                        +  ..+.+...... ....+++||+.+|+....+     |++++++++.....+.+....+ ....++....++.+++
T Consensus       273 ~~~~~~~~~l~~~~~~-~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          273 ITGILKWVKLIDNFEG-EYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             SCSSCCCEEEECSSSS-CEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred             cCCccceEEeeCCCCc-EEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence              4  34544433222 2235788998888775421     8999987643212233332222 1233455555566666


Q ss_pred             EEe
Q 017520          279 AII  281 (370)
Q Consensus       279 ~~~  281 (370)
                      ...
T Consensus       352 ~~~  354 (710)
T 2xdw_A          352 CYL  354 (710)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.94  E-value=0.0011  Score=60.08  Aligned_cols=198  Identities=12%  Similarity=0.041  Sum_probs=107.5

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEE--cCCCcEEEE-eCCCceEEEc-CCC--eEE
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTS--TKEGHLIIC-DNANGLHKVS-EDG--VEN  150 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~--d~~G~L~v~-~~~~gi~~~~-~~g--~~~  150 (370)
                      ...++++.++|. |++++.+|.|..|+  +++............ ++++  +++++++++ ..++.|..++ .++  ...
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  166 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV  166 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence            456788888875 66677899999999  666555555556667 8998  888875554 4444566666 555  333


Q ss_pred             EEeecCCc--ccccccceEEcCCCcEEEEeCCCCC----------CCccce-----------ecccccCCCceEEEEeCC
Q 017520          151 FLSYVNGS--KLRFANDVVEASDGSLYFTVSSSKY----------LPHEYC-----------LDILEGKPHGQLLKYDPS  207 (370)
Q Consensus       151 ~~~~~~g~--~~~~~~~l~~d~~G~l~v~d~~~~~----------~~~~~~-----------~~~~~~~~~g~l~~~d~~  207 (370)
                      +.......  ......-+....++.+.+-+.....          .....+           ..+.....++.|..+|.+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~  246 (368)
T 3mmy_A          167 LQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYIN  246 (368)
T ss_dssp             EECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESS
T ss_pred             EecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecC
Confidence            32110000  0011112233334444443321100          000000           002223345667777765


Q ss_pred             CCe----EEEEecCCC------------CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeE
Q 017520          208 SNI----TTLVADGFY------------FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINL  270 (370)
Q Consensus       208 t~~----~~~~~~~~~------------~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~  270 (370)
                      ...    ...+.....            ....++++++++.++.+...+ |..|++...+  ....+ ....+....+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~--~~~~~-~~~~~~v~~~~~  323 (368)
T 3mmy_A          247 PPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART--KLKTS-EQLDQPISACCF  323 (368)
T ss_dssp             CSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE--EEEEC-CCCSSCEEEEEE
T ss_pred             CCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc--EEEEe-cCCCCCceEEEE
Confidence            441    111111111            367899999999888887777 9999976431  11222 223334567889


Q ss_pred             CCCCCEEEEEe
Q 017520          271 APDGTFWIAII  281 (370)
Q Consensus       271 d~~G~lwv~~~  281 (370)
                      +++|.+.++..
T Consensus       324 s~~g~~l~~~s  334 (368)
T 3mmy_A          324 NHNGNIFAYAS  334 (368)
T ss_dssp             CTTSSCEEEEE
T ss_pred             CCCCCeEEEEe
Confidence            99997555543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.92  E-value=0.0014  Score=59.88  Aligned_cols=131  Identities=18%  Similarity=0.219  Sum_probs=82.3

Q ss_pred             eEEEEeCCCCeEEEEe-------cCCCCccceEE--ccC-CC-EEEEEeCCc-EEEEEeCCCCCC-----ceeeeccCCC
Q 017520          200 QLLKYDPSSNITTLVA-------DGFYFANGVAL--SRD-ED-YVVVCESWK-CRKYWLKGERKG-----KLETFAENLP  262 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~-------~~~~~p~gi~~--~~d-g~-~l~v~~~~~-l~~~~~~~~~~~-----~~~~~~~~~~  262 (370)
                      .++.+|++++.++.+.       ..+..|.|+|+  +++ ++ ++|+++..+ +..|.+.....+     ..+.|  .++
T Consensus       102 ~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f--~lg  179 (355)
T 3amr_A          102 EIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF--KMN  179 (355)
T ss_dssp             EEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE--ECS
T ss_pred             EEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe--cCC
Confidence            4455688887776652       34578999999  764 43 577777777 777776422111     12223  355


Q ss_pred             CCCCceeECC-CCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC--C----CcEEEEEeC
Q 017520          263 GAPDNINLAP-DGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE--D----GTIIRNLVD  335 (370)
Q Consensus       263 g~p~~i~~d~-~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~--~----g~~~~~~~~  335 (370)
                      +.|.++..|+ .|.||++....                                   .|.+|+.  +    ++++..+. 
T Consensus       180 sq~EgcvvDd~~g~Lyv~eEd~-----------------------------------GIw~~da~p~~~~~~~~v~~~~-  223 (355)
T 3amr_A          180 SQTEGMAADDEYGRLYIAEEDE-----------------------------------AIWKFSAEPDGGSNGTVIDRAD-  223 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTT-----------------------------------EEEEEECSTTSCSCCEEEEEBS-
T ss_pred             CCcceEEEcCCCCeEEEecccc-----------------------------------eEEEEeCCcCCCCCceEEEEec-
Confidence            6788999985 67899998654                                   3788873  3    33444432 


Q ss_pred             CCCCccccceeEEEE---C--CEEEEEeCCCCeEEEEeC
Q 017520          336 PTGQLMSFVTSGLQV---D--NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       336 ~~g~~~~~~t~~~~~---~--g~L~~gs~~~~~i~~~~~  369 (370)
                       .+.+...+..+...   +  |+|++++...+.++++++
T Consensus       224 -~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          224 -GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             -SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             -CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence             23223234444332   2  579999988888888875

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.91  E-value=0.00015  Score=73.26  Aligned_cols=129  Identities=8%  Similarity=-0.002  Sum_probs=83.5

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC----CceeceEEcCCCcE-EEEeC---------CCceEEEc
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS----QTLVGLTSTKEGHL-IICDN---------ANGLHKVS  144 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~----~p~~gl~~d~~G~L-~v~~~---------~~gi~~~~  144 (370)
                      +.++.+.++|.++..+.+|.|+.++  +|+.+.+.....    ... .+++++||+. ..+..         ...|+.++
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            4467888899777666788999999  666655543221    255 7899999984 33332         13466666


Q ss_pred             -CCC-e---EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC
Q 017520          145 -EDG-V---ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF  218 (370)
Q Consensus       145 -~~g-~---~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~  218 (370)
                       .+| .   ..+    .    ..+..++++|||+ |.++.                   .+.|+.+|..+++...+....
T Consensus        97 ~~~g~~~~~~~l----~----~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~  149 (719)
T 1z68_A           97 LSNGEFVRGNEL----P----RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNG  149 (719)
T ss_dssp             TTTTEECCSSCC----C----SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCC
T ss_pred             CCCCccccceec----C----cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCC
Confidence             455 3   221    1    2466789999995 55542                   257889988777665443211


Q ss_pred             -------------------CCccceEEccCCCEEEEEe
Q 017520          219 -------------------YFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       219 -------------------~~p~gi~~~~dg~~l~v~~  237 (370)
                                         ....+++++|||+.|+++.
T Consensus       150 ~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          150 RENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             BTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             CcCCeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                               1124799999999887765

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=97.91  E-value=0.00027  Score=71.29  Aligned_cols=190  Identities=10%  Similarity=0.028  Sum_probs=98.4

Q ss_pred             CcceEEcCCCc-EEEEec---------CCeEEEEe--CCeE---EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-
Q 017520           81 PEDASMDKNGV-IYTATR---------DGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-  144 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~---------~g~I~~~~--~g~~---~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-  144 (370)
                      ..++++.+||+ |.++..         ++.|+.++  +|+.   ..+   ..... .++++|||+..+....+.|+.++ 
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~-~~~~SPDG~~la~~~~~~i~~~~~  137 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQ-YLCWSPVGSKLAYVYQNNIYLKQR  137 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBC-CEEECSSTTCEEEEETTEEEEESS
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---Ccccc-cceECCCCCEEEEEECCeEEEEeC
Confidence            56789999997 444443         47899998  5554   322   23455 89999999744433355788888 


Q ss_pred             CCC-eEEEEee-cC-----Ccc--------cccccceEEcCCCc-EEEEeCCCCCCCcccee------------cc----
Q 017520          145 EDG-VENFLSY-VN-----GSK--------LRFANDVVEASDGS-LYFTVSSSKYLPHEYCL------------DI----  192 (370)
Q Consensus       145 ~~g-~~~~~~~-~~-----g~~--------~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~------------~~----  192 (370)
                      .+| ...+... ..     |.+        +.....++++|||+ |.++.... -....+..            .+    
T Consensus       138 ~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~yp~  216 (719)
T 1z68_A          138 PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFND-TDIPVIAYSYYGDEQYPRTINIPYPK  216 (719)
T ss_dssp             TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEEC-TTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred             CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCccceeecCCC
Confidence            555 4333211 00     000        11225789999996 44442110 00000000            00    


Q ss_pred             -cccCCCceEEEEeCCCCeEE---EEe------cCCCCccceEEccCCCEEEEE-eCCc----EEEEE----eCCCCCCc
Q 017520          193 -LEGKPHGQLLKYDPSSNITT---LVA------DGFYFANGVALSRDEDYVVVC-ESWK----CRKYW----LKGERKGK  253 (370)
Q Consensus       193 -~~~~~~g~l~~~d~~t~~~~---~~~------~~~~~p~gi~~~~dg~~l~v~-~~~~----l~~~~----~~~~~~~~  253 (370)
                       -.......|+.+|.++++..   .+.      ........++++||++.++.. +...    |+.++    .++.+.  
T Consensus       217 ~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~--  294 (719)
T 1z68_A          217 AGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDC--  294 (719)
T ss_dssp             TTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEEC--
T ss_pred             CCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCce--
Confidence             00012237888898876531   111      112234578999998744442 2222    88888    544321  


Q ss_pred             eeeec----cCCCCCCC-----ceeECCCCC-EEE
Q 017520          254 LETFA----ENLPGAPD-----NINLAPDGT-FWI  278 (370)
Q Consensus       254 ~~~~~----~~~~g~p~-----~i~~d~~G~-lwv  278 (370)
                       ..+.    ....+..+     .+++++||+ +++
T Consensus       295 -~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  328 (719)
T 1z68_A          295 -PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYK  328 (719)
T ss_dssp             -CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEE
T ss_pred             -EEEEecccccCCceEccccCCccEECCCCCeEEE
Confidence             1111    12222233     678899996 444

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=97.90  E-value=0.011  Score=52.72  Aligned_cols=181  Identities=11%  Similarity=0.088  Sum_probs=105.9

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEE-EecCCCceeceEEcCCCcEEEE-eCCCceEEEcCCC-eEEEE
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNW-KFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVSEDG-VENFL  152 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~-~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~~~g-~~~~~  152 (370)
                      ....++++.++|. |..+..+|.|..++  .+..... ........ ...+.+++..+++ ..++.+..++..+ .....
T Consensus        87 ~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~  165 (340)
T 4aow_A           87 HFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVL-SVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTV  165 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCcee-EEEEeecCccceeecCCCeEEEEEeCCCceEEE
Confidence            3467788998886 55666899998888  3333322 22333344 6677777765554 4334455555333 22211


Q ss_pred             eecCCcccccccceEEcCCC--cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccC
Q 017520          153 SYVNGSKLRFANDVVEASDG--SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRD  229 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G--~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~d  229 (370)
                      . ..+ ....+..+++.+++  .+.++.+                 .++.|..+|..+++......+ ....+.++++++
T Consensus       166 ~-~~~-~~~~v~~~~~~~~~~~~~~~s~~-----------------~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~  226 (340)
T 4aow_A          166 Q-DES-HSEWVSCVRFSPNSSNPIIVSCG-----------------WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPD  226 (340)
T ss_dssp             C-SSS-CSSCEEEEEECSCSSSCEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             E-ecc-ccCcccceEEccCCCCcEEEEEc-----------------CCCEEEEEECCCCceeeEecCCCCcEEEEEECCC
Confidence            1 111 11345567776654  4555532                 346788899887766544433 234578999999


Q ss_pred             CCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          230 EDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++.++.+...+ |..||+...+  ....+.  .......+++.+++.+..+...+
T Consensus       227 ~~~l~s~s~Dg~i~iwd~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~~~~d~  277 (340)
T 4aow_A          227 GSLCASGGKDGQAMLWDLNEGK--HLYTLD--GGDIINALCFSPNRYWLCAATGP  277 (340)
T ss_dssp             SSEEEEEETTCEEEEEETTTTE--EEEEEE--CSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEEeccCc--eeeeec--CCceEEeeecCCCCceeeccCCC
Confidence            99777777777 8888876431  122221  12234456778888777776554

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=97.88  E-value=0.0014  Score=61.88  Aligned_cols=181  Identities=9%  Similarity=-0.058  Sum_probs=109.2

Q ss_pred             CCCcceEEcCCCc--EEEEecCCeEEEEe--CC-e-------EEEEEecCCCceeceEEcC-CCcEEEEeCC-CceEEEc
Q 017520           79 NHPEDASMDKNGV--IYTATRDGWIKRLQ--DG-T-------WVNWKFIDSQTLVGLTSTK-EGHLIICDNA-NGLHKVS  144 (370)
Q Consensus        79 ~~P~~i~~d~~G~--l~v~~~~g~I~~~~--~g-~-------~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~  144 (370)
                      ....++++++++.  |.+++.+|.|..|+  .+ .       ...+......+. ++++++ ++.++++... +.|..++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3567899988765  66677899999999  32 1       122333444567 899998 5567665444 4466666


Q ss_pred             -CCC-----eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--eEEEEe
Q 017520          145 -EDG-----VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITTLVA  215 (370)
Q Consensus       145 -~~g-----~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--~~~~~~  215 (370)
                       .++     ...+..     ....++.+++.++|. ++++.+                 .++.|..||..+.  .+..+.
T Consensus       261 ~~~~~~~~~~~~~~~-----~~~~v~~i~~~p~~~~~l~tg~-----------------~dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDA-----HTAEVNCLSFNPYSEFILATGS-----------------ADKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEEC-----CSSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEeec-----CCCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEEEeCCCCCCCeEEee
Confidence             332     222211     113578899999885 666643                 3578999997652  233333


Q ss_pred             cCCCCccceEEccCCCEEEEEe-CCc-EEEEEeCCCCCC-----------ceeeeccCCCCCCCceeECCCCC-EEEEEe
Q 017520          216 DGFYFANGVALSRDEDYVVVCE-SWK-CRKYWLKGERKG-----------KLETFAENLPGAPDNINLAPDGT-FWIAII  281 (370)
Q Consensus       216 ~~~~~p~gi~~~~dg~~l~v~~-~~~-l~~~~~~~~~~~-----------~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~  281 (370)
                      ........++++++++.++++. ..+ |..|++......           ............+..++++++|. +.++..
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s  398 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS  398 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence            3444567899999996555554 445 889988652110           11111112233467788899887 555544


Q ss_pred             c
Q 017520          282 K  282 (370)
Q Consensus       282 ~  282 (370)
                      .
T Consensus       399 ~  399 (430)
T 2xyi_A          399 E  399 (430)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.88  E-value=0.01  Score=58.56  Aligned_cols=45  Identities=16%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             CCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520          315 GGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       315 ~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                      ...+.+..+| .+|++++.+..+.+.....++.  +.+|++|++...+
T Consensus       491 t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y--~~~G~qyv~~~~G  536 (599)
T 1w6s_A          491 TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTY--THKGTQYVAIYYG  536 (599)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred             CCCCeEEEEECCCCCEEEEeeCCCCcEeccEEE--EeCCEEEEEEEcc
Confidence            3456789999 4699999998877654433322  4789999876544

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.85  E-value=0.0015  Score=62.43  Aligned_cols=134  Identities=13%  Similarity=0.121  Sum_probs=77.4

Q ss_pred             eEEEEEecCCCceeceEEcCCCc--EEEEeCCCceEEEcCCC-e--EEEEee---c-CC---cccccccceEEcCC----
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGH--LIICDNANGLHKVSEDG-V--ENFLSY---V-NG---SKLRFANDVVEASD----  171 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~--L~v~~~~~gi~~~~~~g-~--~~~~~~---~-~g---~~~~~~~~l~~d~~----  171 (370)
                      +++.++.....|. +|++.+||.  |||++..+.|+.++++| .  +.+...   . .+   .....+-+|+++|+    
T Consensus         5 ~v~~va~gL~~P~-~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n   83 (463)
T 2wg3_C            5 CIQEVVSGLRQPV-GALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEEEESSEE-EEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred             EEEEeccCCCCce-EEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence            3566666678899 999999985  99998766688887554 2  122211   1 11   01235568999986    


Q ss_pred             CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--------eEEEEec-----CCCCccceEEccCCCEEEEEeC
Q 017520          172 GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--------ITTLVAD-----GFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       172 G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~-----~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      |.||++-+...-+...   .  ......+|.|+....+        ..+++..     ...+...|+|++||. ||++.-
T Consensus        84 ~~lYv~yt~~~~~~~~---~--~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~G  157 (463)
T 2wg3_C           84 GKLYVSYTTNQERWAI---G--PHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILG  157 (463)
T ss_dssp             CEEEEEEEECCCSSCS---S--SSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEEC
T ss_pred             CEEEEEEeCCCCCccc---C--CcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeC
Confidence            8899985320000000   0  0000136666654311        1222221     223455699999997 898731


Q ss_pred             ------------------Cc-EEEEEeCC
Q 017520          239 ------------------WK-CRKYWLKG  248 (370)
Q Consensus       239 ------------------~~-l~~~~~~~  248 (370)
                                        .+ |+|+++++
T Consensus       158 d~~~~~~~~~~~q~~~~~~GkIlRi~~dg  186 (463)
T 2wg3_C          158 DGMITLDDMEEMDGLSDFTGSVLRLDVDT  186 (463)
T ss_dssp             CTTCCHHHHHHCTTCCSCTTEEEEEBCCC
T ss_pred             CCCCCCCccccccCcCCCCeeEEEEECCC
Confidence                              12 99999887

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.85  E-value=0.014  Score=54.86  Aligned_cols=138  Identities=14%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecC
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVN  156 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~  156 (370)
                      +++++ +..+++++.+|.|..++  +++.. .+........ ++.++ +..++.+..++.|..++ .++  ...+...  
T Consensus       164 ~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--  238 (445)
T 2ovr_B          164 SSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGH--  238 (445)
T ss_dssp             EEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECC--
T ss_pred             EEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE-EEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCC--
Confidence            34444 33555666677777777  44432 2222233344 66664 23455555444455555 444  2222111  


Q ss_pred             CcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCccceEEccCCCEEEE
Q 017520          157 GSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFANGVALSRDEDYVVV  235 (370)
Q Consensus       157 g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~gi~~~~dg~~l~v  235 (370)
                         ...+..+.+  +|+..++.+                 .++.|..+|..+++........ .....+++  +++.++.
T Consensus       239 ---~~~v~~~~~--~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~  294 (445)
T 2ovr_B          239 ---VAAVRCVQY--DGRRVVSGA-----------------YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVS  294 (445)
T ss_dssp             ---SSCEEEEEE--CSSCEEEEE-----------------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred             ---cccEEEEEE--CCCEEEEEc-----------------CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEE
Confidence               123445555  444333322                 3477888888766554333322 22334444  7887888


Q ss_pred             EeCCc-EEEEEeCCC
Q 017520          236 CESWK-CRKYWLKGE  249 (370)
Q Consensus       236 ~~~~~-l~~~~~~~~  249 (370)
                      +...+ |..||+...
T Consensus       295 ~~~d~~i~i~d~~~~  309 (445)
T 2ovr_B          295 GSLDTSIRVWDVETG  309 (445)
T ss_dssp             EETTSCEEEEETTTC
T ss_pred             EeCCCeEEEEECCCC
Confidence            88777 999997653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.0016  Score=67.70  Aligned_cols=176  Identities=13%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             CCCcceEEcCCCcE-EEEecCCeEEEEe-C-CeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC--eEEE
Q 017520           79 NHPEDASMDKNGVI-YTATRDGWIKRLQ-D-GTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG--VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l-~v~~~~g~I~~~~-~-g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g--~~~~  151 (370)
                      ....+++++++|.+ .+|+.+|.|..|+ . ++............ .++|.+ |. |..++.++.|..++ .++  +..+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            45788999998864 4667899999999 3 33332222333456 899998 77 45455445566666 555  4333


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe------------cCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA------------DGFY  219 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~------------~~~~  219 (370)
                      .  ..    ..+..++++++|+..++-.                 .++.|..||.++++...+.            ....
T Consensus        96 ~--~~----~~V~~v~~sp~g~~l~sgs-----------------~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           96 F--VP----GKITSIDTDASLDWMLIGL-----------------QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             E--CS----SCEEEEECCTTCSEEEEEE-----------------TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             c--CC----CCEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCccccceeccccccccccccCCC
Confidence            2  11    3578899999997555432                 3578999998877653221            0112


Q ss_pred             CccceEEccCC-CEEEEEeCCc-EEEEEeCCCCCCceeeeccC-----------------CCCCCCceeECCCCCEEEEE
Q 017520          220 FANGVALSRDE-DYVVVCESWK-CRKYWLKGERKGKLETFAEN-----------------LPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       220 ~p~gi~~~~dg-~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~-----------------~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ....++++|++ +.++++...+ | .||+...+.  ...+...                 ..+....+++.++|++.++.
T Consensus       153 ~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasg  229 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITI  229 (902)
T ss_dssp             CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEE
T ss_pred             CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEE
Confidence            45679999964 4556555555 7 888765321  1122111                 01223457789999866665


Q ss_pred             ec
Q 017520          281 IK  282 (370)
Q Consensus       281 ~~  282 (370)
                      ..
T Consensus       230 s~  231 (902)
T 2oaj_A          230 HE  231 (902)
T ss_dssp             ET
T ss_pred             EC
Confidence            44

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.80  E-value=0.0012  Score=64.20  Aligned_cols=147  Identities=11%  Similarity=0.021  Sum_probs=95.5

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCe--EEEEEecCCCceece--EEcCCC-cEEEEeCCCc-eEEEc-CCC--eE
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGT--WVNWKFIDSQTLVGL--TSTKEG-HLIICDNANG-LHKVS-EDG--VE  149 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~--~~~~~~~~~~p~~gl--~~d~~G-~L~v~~~~~g-i~~~~-~~g--~~  149 (370)
                      ..++++.+++.|.+|+.||.|..|+  ++.  ...+........ ++  ++.++| .++++....+ +..++ +++  ..
T Consensus       269 v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~  347 (524)
T 2j04_B          269 ITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTK  347 (524)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHC
T ss_pred             EEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccc
Confidence            4567777777888899999999999  343  223333444556 77  457777 7766554555 44455 455  33


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEcc
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSR  228 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~  228 (370)
                      .+.....+   ..+..+++.|+|..+++.+                 .++.|..+|..++.. ..+.......+.++++|
T Consensus       348 ~~~~~~~~---~~v~~v~fsp~~~~l~s~~-----------------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp  407 (524)
T 2j04_B          348 TTVSRFRG---SNLVPVVYCPQIYSYIYSD-----------------GASSLRAVPSRAAFAVHPLVSRETTITAIGVSR  407 (524)
T ss_dssp             EEEEECSC---CSCCCEEEETTTTEEEEEC-----------------SSSEEEEEETTCTTCCEEEEECSSCEEEEECCS
T ss_pred             cccccccc---CcccceEeCCCcCeEEEeC-----------------CCCcEEEEECcccccceeeecCCCceEEEEeCC
Confidence            33222111   2367899999998877744                 345788888876553 33334444568899999


Q ss_pred             CCCEEEEEeCCc-EEEEEeCC
Q 017520          229 DEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       229 dg~~l~v~~~~~-l~~~~~~~  248 (370)
                      +|+.+..+...+ |..|++..
T Consensus       408 ~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          408 LHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             SCCBCEEEETTTEEECCBSCS
T ss_pred             CCCeEEEEECCCEEEEEechH
Confidence            999777766666 77777644

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.75  E-value=0.028  Score=52.70  Aligned_cols=223  Identities=12%  Similarity=0.048  Sum_probs=122.1

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeec
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYV  155 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~  155 (370)
                      .++.++ +..+.+++.+|.|..++  +++. ..+........ ++.++ ...++++..++.|..++ .++  +..+.   
T Consensus       203 ~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~-~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  276 (445)
T 2ovr_B          203 RCMHLH-EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-CVQYD-GRRVVSGAYDFMVKVWDPETETCLHTLQ---  276 (445)
T ss_dssp             EEEEEE-TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-EEEEC-SSCEEEEETTSCEEEEEGGGTEEEEEEC---
T ss_pred             EEEEec-CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEE-EEEEC-CCEEEEEcCCCEEEEEECCCCcEeEEec---
Confidence            345554 34577788889999998  5543 33333344455 77773 23466666555576777 555  33331   


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV  235 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v  235 (370)
                       +. ...+..+.+  +|...++.+                 .++.|..+|..+++......... ....+++.+++.++.
T Consensus       277 -~~-~~~v~~~~~--~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~~~~~-~~v~~~~~~~~~l~~  334 (445)
T 2ovr_B          277 -GH-TNRVYSLQF--DGIHVVSGS-----------------LDTSIRVWDVETGNCIHTLTGHQ-SLTSGMELKDNILVS  334 (445)
T ss_dssp             -CC-SSCEEEEEE--CSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCC-SCEEEEEEETTEEEE
T ss_pred             -CC-CCceEEEEE--CCCEEEEEe-----------------CCCeEEEEECCCCCEEEEEcCCc-ccEEEEEEeCCEEEE
Confidence             11 124556666  565444432                 34789999987776544333221 122344456777777


Q ss_pred             EeCCc-EEEEEeCCCCCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccc
Q 017520          236 CESWK-CRKYWLKGERKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  312 (370)
Q Consensus       236 ~~~~~-l~~~~~~~~~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (370)
                      +...+ |..|++...+  ....+..  ...+....+.++  +++.++....                             
T Consensus       335 ~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d-----------------------------  381 (445)
T 2ovr_B          335 GNADSTVKIWDIKTGQ--CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDD-----------------------------  381 (445)
T ss_dssp             EETTSCEEEEETTTCC--EEEEECSTTSCSSCEEEEEEC--SSEEEEEETT-----------------------------
T ss_pred             EeCCCeEEEEECCCCc--EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCC-----------------------------
Confidence            77777 9999975432  1222221  011223335554  5554444332                             


Q ss_pred             cCCCceEEEEEC-CCCcEEEEEeCC-CCCccccceeEEEECC-E-EEEEeCCCC---eEEEEeCC
Q 017520          313 TLGGGAHLIHVA-EDGTIIRNLVDP-TGQLMSFVTSGLQVDN-H-LYVISLTSN---FIGKVQLS  370 (370)
Q Consensus       313 ~~~~~g~v~~~~-~~g~~~~~~~~~-~g~~~~~~t~~~~~~g-~-L~~gs~~~~---~i~~~~~~  370 (370)
                           +.|..+| .+|+.+..+... .+.....+..+....+ . |..|+.++.   +|.+++++
T Consensus       382 -----g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          382 -----GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             -----SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             -----CeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence                 4577777 468888877432 2233345666666543 3 455666654   67777653

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=97.70  E-value=0.023  Score=50.39  Aligned_cols=113  Identities=9%  Similarity=-0.067  Sum_probs=70.4

Q ss_pred             CCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC---eEEEEeecCCcccccccceEEcC--CCcEEEEeCCCCCCCccce
Q 017520          117 SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG---VENFLSYVNGSKLRFANDVVEAS--DGSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       117 ~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g---~~~~~~~~~g~~~~~~~~l~~d~--~G~l~v~d~~~~~~~~~~~  189 (370)
                      +... +++++++|+++++....| |..++ .++   .+.. ....+. ...+..+++.+  +|++.++.+          
T Consensus        12 ~~v~-~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~-~~~v~~~~~~~~~d~~~l~s~~----------   78 (351)
T 3f3f_A           12 DLVH-DVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELS-DSWRAH-DSSIVAIDWASPEYGRIIASAS----------   78 (351)
T ss_dssp             SCEE-EEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEE-EEEECC-SSCEEEEEECCGGGCSEEEEEE----------
T ss_pred             ccee-EEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceec-ceeccC-CCcEEEEEEcCCCCCCEEEEEc----------
Confidence            4456 899999998655544444 55555 333   2222 211221 23577889988  577666643          


Q ss_pred             ecccccCCCceEEEEeCCCCe----------EEEEecCCCCccceEEccC--CCEEEEEeCCc-EEEEEeCCC
Q 017520          190 LDILEGKPHGQLLKYDPSSNI----------TTLVADGFYFANGVALSRD--EDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~t~~----------~~~~~~~~~~p~gi~~~~d--g~~l~v~~~~~-l~~~~~~~~  249 (370)
                             .++.|..||..+++          ...+.........++++++  ++.++.+...+ |..||+...
T Consensus        79 -------~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~  144 (351)
T 3f3f_A           79 -------YDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP  144 (351)
T ss_dssp             -------TTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSST
T ss_pred             -------CCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCCh
Confidence                   34678888876542          2223233345678999999  88788877777 999998654

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.70  E-value=0.031  Score=54.98  Aligned_cols=42  Identities=12%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             eEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520          318 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       318 g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                      +.+..+|. .|++++.+..+.+.....++  .+.+|++|++...+
T Consensus       507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~--y~~~G~qYv~~~~G  549 (582)
T 1flg_A          507 GYFKAFDAKSGKELWKFQTGSGIVSPPIT--WEQDGEQYLGVTVG  549 (582)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEE--EEETTEEEEEEEEC
T ss_pred             CcEEEEECCCCCEEEEecCCCCcccCceE--EEECCEEEEEEEcc
Confidence            57899995 79999999987765333322  24789999985443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.67  E-value=0.0068  Score=54.73  Aligned_cols=172  Identities=9%  Similarity=0.046  Sum_probs=96.0

Q ss_pred             CCcceEEcCCCc-EEEEe-cC--C--eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-------------
Q 017520           80 HPEDASMDKNGV-IYTAT-RD--G--WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-------------  137 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~-~~--g--~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-------------  137 (370)
                      ...++++.+||. |++.. ..  +  .|+.++  +|+...+..... .. ++++++||+ |+++...             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            455678889985 54444 22  3  488888  566555544434 66 899999996 5554321             


Q ss_pred             --------------CceEEEc-CCC-e-EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCce
Q 017520          138 --------------NGLHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (370)
Q Consensus       138 --------------~gi~~~~-~~g-~-~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  200 (370)
                                    ..|+.++ .+| . +.+..     +  .+..+++++|| ++++.....-..        ...+...
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~~~--------~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREIIP--------QYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCSSC--------CSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEecccccc--------ccccccc
Confidence                          3477777 456 4 54432     1  45678899999 776642100000        0001357


Q ss_pred             EEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-C-------c-EEEEEeCCCCCCceeeeccCCCCCCCc-eeE
Q 017520          201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-W-------K-CRKYWLKGERKGKLETFAENLPGAPDN-INL  270 (370)
Q Consensus       201 l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~-------~-l~~~~~~~~~~~~~~~~~~~~~g~p~~-i~~  270 (370)
                      |+.+|  +++.+.+... ...  ..+++||+.+++... .       . |+.++ .+    +...+.........+ +..
T Consensus       202 l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d-~~----~~~~l~~~~~~~~~~~~~~  271 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLYGKPEKKYMSEHNKLYIYD-GK----EVMGILDEVDRGVGQAKIK  271 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEEECCSSSCCCSSCEEEEEC-SS----CEEESSTTCCSEEEEEEEE
T ss_pred             EEEeC--CCceEEeccC-cce--eeECCCCCEEEEEEccccCCccccceEEEEC-CC----ceEeccccCCcccCCccEE
Confidence            99999  5666655543 211  233899987766542 1       2 77777 32    233332222222333 667


Q ss_pred             CCCCCEEEEEe
Q 017520          271 APDGTFWIAII  281 (370)
Q Consensus       271 d~~G~lwv~~~  281 (370)
                      + +| +++...
T Consensus       272 s-dg-~~~~~~  280 (347)
T 2gop_A          272 D-GK-VYFTLF  280 (347)
T ss_dssp             T-TE-EEEEEE
T ss_pred             c-Cc-EEEEEe
Confidence            7 77 665543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.66  E-value=0.013  Score=58.94  Aligned_cols=42  Identities=24%  Similarity=0.313  Sum_probs=30.3

Q ss_pred             ceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCC
Q 017520          317 GAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLT  360 (370)
Q Consensus       317 ~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~  360 (370)
                      .+.+..+|. .|++++.+..+.+.....++.  +.+|+.|++...
T Consensus       495 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty--~~~G~qyv~~~~  537 (689)
T 1yiq_A          495 DGRVIAYAADTGEKLWEQPAASGVMAAPVTY--SVDGEQYVTFMA  537 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEEE
T ss_pred             CCcEEEEECCCCccceeeeCCCCcccCceEE--EECCEEEEEEEe
Confidence            357899994 699999998877653333322  578999988553

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.66  E-value=0.031  Score=55.13  Aligned_cols=64  Identities=17%  Similarity=0.121  Sum_probs=41.1

Q ss_pred             ceEEc-CCCc----EEEEecCCeEEEEe--CCeEEEEEecCC-----CceeceEEcCCCcEEEEeC------CCceEEEc
Q 017520           83 DASMD-KNGV----IYTATRDGWIKRLQ--DGTWVNWKFIDS-----QTLVGLTSTKEGHLIICDN------ANGLHKVS  144 (370)
Q Consensus        83 ~i~~d-~~G~----l~v~~~~g~I~~~~--~g~~~~~~~~~~-----~p~~gl~~d~~G~L~v~~~------~~gi~~~~  144 (370)
                      ++++. .+|.    ||+++.++.|+.+|  +|+...-.....     .......+. +|.+|++..      .+.|+.+|
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D  188 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYD  188 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEE
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEE
Confidence            35663 2566    99999999999999  787654332221     111022332 678998763      35689999


Q ss_pred             -CCC
Q 017520          145 -EDG  147 (370)
Q Consensus       145 -~~g  147 (370)
                       ++|
T Consensus       189 ~~TG  192 (599)
T 1w6s_A          189 VKTG  192 (599)
T ss_dssp             TTTC
T ss_pred             CCCC
Confidence             778

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.65  E-value=0.0036  Score=65.13  Aligned_cols=149  Identities=7%  Similarity=-0.025  Sum_probs=95.0

Q ss_pred             CcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcE-EEEeCCCceEEEc-CCC-eEEEEe-
Q 017520           81 PEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG-VENFLS-  153 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g-~~~~~~-  153 (370)
                      -.++++.+ |. |..++.++.|..|+  +++........+... .++++++|+. +++...+.|..++ +++ ...+.. 
T Consensus        61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~  138 (902)
T 2oaj_A           61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLD  138 (902)
T ss_dssp             EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEEC
T ss_pred             EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCccccceec
Confidence            46788888 66 77777999999999  555332223345567 8999999974 5555545566666 555 322211 


Q ss_pred             ------ecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--------
Q 017520          154 ------YVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--------  218 (370)
Q Consensus       154 ------~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--------  218 (370)
                            .........+..++++|++ .+.++..                 .++.+ .||..+++........        
T Consensus       139 ~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~-----------------~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~  200 (902)
T 2oaj_A          139 NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY-----------------EYVTL-TYSLVENEIKQSFIYELPPFAPGG  200 (902)
T ss_dssp             CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC-----------------SSCEE-EEETTTTEEEEEECCCBCTTCCCS
T ss_pred             cccccccccccCCCCeEEEEEccCCCCEEEEEe-----------------CCCcE-EEECCCCceEEEEecccCCcCCCc
Confidence                  0001112467889999964 4444322                 34678 9998877654333221        


Q ss_pred             -----------CCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          219 -----------YFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       219 -----------~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                                 ...+.+++++||+.+..+...+ |..||+...
T Consensus       201 ~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g  243 (902)
T 2oaj_A          201 DFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSG  243 (902)
T ss_dssp             TTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTC
T ss_pred             ccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence                       2357899999999777777777 888987543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.0081  Score=58.52  Aligned_cols=146  Identities=10%  Similarity=0.061  Sum_probs=91.5

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe-CCeEEEEEecCC-----CceeceEEcCCCc-EEEEeCCCceEEEc-CCC-e-
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-DGTWVNWKFIDS-----QTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-V-  148 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~-~g~~~~~~~~~~-----~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~-  148 (370)
                      ...++++.++|. |-+++.+|.|..|+ ++-+..+. ...     ... +++++|||+ |+++..++.|..++ .++ . 
T Consensus        87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~-svafSPDG~~LAsgs~DGtVkIWd~~~~~l~  164 (588)
T 2j04_A           87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYH-CFEWNPIESSIVVGNEDGELQFFSIRKNSEN  164 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEE-EEEECSSSSCEEEEETTSEEEEEECCCCTTT
T ss_pred             cEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEE-EEEEcCCCCEEEEEcCCCEEEEEECCCCccc
Confidence            467788899986 55677999999999 55444433 221     356 899999997 55555444455555 444 3 


Q ss_pred             -------EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE----EEEec-
Q 017520          149 -------ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT----TLVAD-  216 (370)
Q Consensus       149 -------~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~----~~~~~-  216 (370)
                             ..+.....| ....+..+++.||| + ++.+                 .++.+..+|.+++..    +.+.. 
T Consensus       165 ~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-L-aass-----------------~D~tVrlWd~~~~~~~~~~~tL~~~  224 (588)
T 2j04_A          165 TPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-L-VAAL-----------------SNNSVFSMTVSASSHQPVSRMIQNA  224 (588)
T ss_dssp             CCCCEEEEEEECSCTT-CCCCEEEEEEETTE-E-EEEE-----------------TTCCEEEECCCSSSSCCCEEEEECC
T ss_pred             cccceeeeeeeccccc-ccccEEEEEEcCCc-E-EEEe-----------------CCCeEEEEECCCCccccceeeeccc
Confidence                   112111233 23578899999999 4 4432                 346788888876653    22322 


Q ss_pred             CCCCccceEEccCCCEEEEEeCCcEEEEEeCCC
Q 017520          217 GFYFANGVALSRDEDYVVVCESWKCRKYWLKGE  249 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~  249 (370)
                      .-.....++++  |+.+..+..+.|..|++.+.
T Consensus       225 h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~  255 (588)
T 2j04_A          225 SRRKITDLKIV--DYKVVLTCPGYVHKIDLKNY  255 (588)
T ss_dssp             CSSCCCCEEEE--TTEEEEECSSEEEEEETTTT
T ss_pred             ccCcEEEEEEE--CCEEEEEeCCeEEEEECCCC
Confidence            22457789998  46566665433999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.61  E-value=0.022  Score=50.94  Aligned_cols=149  Identities=15%  Similarity=0.095  Sum_probs=84.9

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe--CCeE---EEEEecCCCceeceEEcC--CCcEEE-EeCCCceEEEc-CCC-e
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTK--EGHLII-CDNANGLHKVS-EDG-V  148 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~~---~~~~~~~~~p~~gl~~d~--~G~L~v-~~~~~gi~~~~-~~g-~  148 (370)
                      .-.+++++++|+. ..++.++.|..|+  +++.   ..+....+... ++++.+  +|++++ +..++.|..++ +++ .
T Consensus        15 ~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~   93 (316)
T 3bg1_A           15 MIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGTW   93 (316)
T ss_dssp             CEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSCC
T ss_pred             eEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCcc
Confidence            3467889888864 4566899999998  5542   23334455567 899864  366544 44444566666 555 3


Q ss_pred             EEEEeecCCcccccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe-EEEEe--c-CCCCcc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI-TTLVA--D-GFYFAN  222 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~-~~~~~--~-~~~~p~  222 (370)
                      ..... ..+. ...++.+++.|+  |.+.++.+                 .++.|..+|..++. .....  . .....+
T Consensus        94 ~~~~~-~~~h-~~~V~~v~~~p~~~g~~lasgs-----------------~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~  154 (316)
T 3bg1_A           94 EKSHE-HAGH-DSSVNSVCWAPHDYGLILACGS-----------------SDGAISLLTYTGEGQWEVKKINNAHTIGCN  154 (316)
T ss_dssp             CEEEE-ECCC-SSCCCEEEECCTTTCSCEEEEC-----------------SSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred             eEEEE-ccCC-CCceEEEEECCCCCCcEEEEEc-----------------CCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence            22211 1221 136788999887  66655543                 34667777765442 22111  1 112335


Q ss_pred             ceEEccC-----------------CCEEEEEeCCc-EEEEEeCC
Q 017520          223 GVALSRD-----------------EDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       223 gi~~~~d-----------------g~~l~v~~~~~-l~~~~~~~  248 (370)
                      .++++++                 ++.+..+...+ |..|++..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~  198 (316)
T 3bg1_A          155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEE  198 (316)
T ss_dssp             CCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECT
T ss_pred             eEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCC
Confidence            6777776                 34444444455 77777753

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.60  E-value=0.0055  Score=62.32  Aligned_cols=188  Identities=12%  Similarity=0.120  Sum_probs=106.4

Q ss_pred             CCcceEEcCC--Cc-EEEEecCCeEEEEe--CCeE---EEEEecCCCceeceEEcCC--CcEEEEeCC-CceEEEc-CCC
Q 017520           80 HPEDASMDKN--GV-IYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKE--GHLIICDNA-NGLHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~--G~-l~v~~~~g~I~~~~--~g~~---~~~~~~~~~p~~gl~~d~~--G~L~v~~~~-~gi~~~~-~~g  147 (370)
                      ...++++.++  |+ +.+++.+|.|..|+  +++.   ..+........ ++++.++  |+++++... +.|..++ .++
T Consensus        55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~-~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeE-EEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence            3467788755  64 56677899999999  6643   22223344566 8999988  775554444 4455566 333


Q ss_pred             --eEEEEeecCCcccccccceEEcC-------------CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--
Q 017520          148 --VENFLSYVNGSKLRFANDVVEAS-------------DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--  210 (370)
Q Consensus       148 --~~~~~~~~~g~~~~~~~~l~~d~-------------~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--  210 (370)
                        ......  .+. ...+..+++++             +|.+.++.+                 .++.|..||..++.  
T Consensus       134 ~~~~~~~~--~~~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs-----------------~dg~I~iwd~~~~~~~  193 (753)
T 3jro_A          134 GTTSPIII--DAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQT  193 (753)
T ss_dssp             SCCCCEEE--ECC-SSCEEEEEECCCC---------CGGGCCEEEEE-----------------TTSCEEEEEEETTTTE
T ss_pred             CCcceeEe--ecC-CCceEEEEecCcccccccccccCCCCCEEEEEE-----------------CCCeEEEEeccCCccc
Confidence              111111  111 13567788887             465444432                 34677777765442  


Q ss_pred             --EEE-EecCCCCccceEEccC---CCEEEEEeCCc-EEEEEeCCCCCCceeeec--cCCCCCCCceeECCCCCEEEE-E
Q 017520          211 --TTL-VADGFYFANGVALSRD---EDYVVVCESWK-CRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIA-I  280 (370)
Q Consensus       211 --~~~-~~~~~~~p~gi~~~~d---g~~l~v~~~~~-l~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~~G~lwv~-~  280 (370)
                        ... +.........++++++   ++.++.+...+ |..|++............  ....+....++++++|++.++ .
T Consensus       194 ~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence              111 1222334578999999   78777777777 999998764211111111  112334566788888864444 4


Q ss_pred             ecCchhHH
Q 017520          281 IKLDARRM  288 (370)
Q Consensus       281 ~~~~~~~~  288 (370)
                      ..+...++
T Consensus       274 ~Dg~I~vw  281 (753)
T 3jro_A          274 GDNKVTLW  281 (753)
T ss_dssp             SSSCEECC
T ss_pred             CCCEEEEE
Confidence            44433333

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.59  E-value=0.013  Score=54.69  Aligned_cols=149  Identities=11%  Similarity=0.052  Sum_probs=87.0

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe-----CCeEEEEEe-------------cCCCceeceE--EcCCCcEEEE-eCC
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ-----DGTWVNWKF-------------IDSQTLVGLT--STKEGHLIIC-DNA  137 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~-----~g~~~~~~~-------------~~~~p~~gl~--~d~~G~L~v~-~~~  137 (370)
                      ...++++.+++. |.+++.+|.|..|+     .++......             ...... .+.  +.+++.++++ ...
T Consensus       113 ~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  191 (437)
T 3gre_A          113 TVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTNL  191 (437)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEETT
T ss_pred             CEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeCC
Confidence            466788888775 55677889888886     232221110             112223 344  4467765554 444


Q ss_pred             CceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE
Q 017520          138 NGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (370)
Q Consensus       138 ~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~  214 (370)
                      +.|..++ .++  ...+...   .....+..++++++|+..++.+                 .++.|..||..+++....
T Consensus       192 ~~i~iwd~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~  251 (437)
T 3gre_A          192 SRVIIFDIRTLERLQIIENS---PRHGAVSSICIDEECCVLILGT-----------------TRGIIDIWDIRFNVLIRS  251 (437)
T ss_dssp             SEEEEEETTTCCEEEEEECC---GGGCCEEEEEECTTSCEEEEEE-----------------TTSCEEEEETTTTEEEEE
T ss_pred             CeEEEEeCCCCeeeEEEccC---CCCCceEEEEECCCCCEEEEEc-----------------CCCeEEEEEcCCccEEEE
Confidence            4566666 555  3333221   0124678899999998766643                 347799999887665433


Q ss_pred             e--cCCCCccceEEc----cCCCEEEEEeCCc-EEEEEeCCC
Q 017520          215 A--DGFYFANGVALS----RDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       215 ~--~~~~~p~gi~~~----~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      .  ........++++    ++++.++.+...+ |..||+...
T Consensus       252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  293 (437)
T 3gre_A          252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG  293 (437)
T ss_dssp             EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred             EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence            2  222234566444    5676566666666 888887643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.59  E-value=0.02  Score=53.76  Aligned_cols=143  Identities=15%  Similarity=0.084  Sum_probs=79.6

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEee
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~  154 (370)
                      ..++++| +..+.+|+.+|.|..++  +++. ..+........ +++++ ++.++.+..++.|..++ .++  .... ..
T Consensus       176 v~~l~~~-~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~-~~  251 (435)
T 1p22_A          176 VLCLQYD-ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL-HLRFN-NGMMVTCSKDRSIAVWDMASPTDITLR-RV  251 (435)
T ss_dssp             EEEEECC-SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEE-EEECC-TTEEEEEETTSCEEEEECSSSSCCEEE-EE
T ss_pred             EEEEEEC-CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEE-EEEEc-CCEEEEeeCCCcEEEEeCCCCCCceee-eE
Confidence            3445553 33566777888888888  5553 33333334455 77775 34566666555566666 444  2211 11


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEE
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYV  233 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l  233 (370)
                      ..+. ...+..+.+  +|+..++.+                 .++.|..+|..+++....... ......+++  +++.+
T Consensus       252 ~~~~-~~~v~~~~~--~~~~l~s~~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l  309 (435)
T 1p22_A          252 LVGH-RAAVNVVDF--DDKYIVSAS-----------------GDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLV  309 (435)
T ss_dssp             ECCC-SSCEEEEEE--ETTEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEE
T ss_pred             ecCC-CCcEEEEEe--CCCEEEEEe-----------------CCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEE
Confidence            1111 124556666  455444432                 357899999887765433332 222334444  56777


Q ss_pred             EEEeCCc-EEEEEeCCC
Q 017520          234 VVCESWK-CRKYWLKGE  249 (370)
Q Consensus       234 ~v~~~~~-l~~~~~~~~  249 (370)
                      +.+...+ |..||+...
T Consensus       310 ~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          310 VSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             EEEETTSCEEEEETTTC
T ss_pred             EEEeCCCeEEEEECCCC
Confidence            7777777 999997643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.56  E-value=0.012  Score=52.66  Aligned_cols=181  Identities=9%  Similarity=0.068  Sum_probs=95.7

Q ss_pred             CCcceEEcC--CC-cEEEEecCCeEEEEe--CCeE---EEEEecCCCceeceEEcCC--CcEEEEeCCCc-eEEEc-CCC
Q 017520           80 HPEDASMDK--NG-VIYTATRDGWIKRLQ--DGTW---VNWKFIDSQTLVGLTSTKE--GHLIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~--~G-~l~v~~~~g~I~~~~--~g~~---~~~~~~~~~p~~gl~~d~~--G~L~v~~~~~g-i~~~~-~~g  147 (370)
                      ...++++.+  +| .|..++.++.|..|+  +++.   ..+........ ++++.++  |.++++....+ |..++ .++
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~lasgs~D~~i~lwd~~~~  137 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLILACGSSDGAISLLTYTGE  137 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence            345677753  34 566777899999999  4532   22323344566 8999887  66555443434 54455 333


Q ss_pred             -eEEEEeecCCcccccccceEEcCCC-----------------cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDG-----------------SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G-----------------~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~  209 (370)
                       .........+. ...++.+++++++                 +.+++.                 ..++.|..+|..++
T Consensus       138 ~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~  199 (316)
T 3bg1_A          138 GQWEVKKINNAH-TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG-----------------GCDNLIKLWKEEED  199 (316)
T ss_dssp             SCEEECCBTTSS-SSCBCCCEECCCCCC------CCSCCCCCCCBEECC-----------------BTTSBCCEEEECTT
T ss_pred             CCcceeeeeccc-cCCcceEEEccccCCccccccccccCccccceEEEe-----------------cCCCeEEEEEeCCC
Confidence             11111111221 1345667777763                 222221                 23456666665433


Q ss_pred             -eEEE---EecCCCCccceEEccCC----CEEEEEeCCc-EEEEEeCCCCCCc--eeeeccCCCCCCCceeECCCCCEEE
Q 017520          210 -ITTL---VADGFYFANGVALSRDE----DYVVVCESWK-CRKYWLKGERKGK--LETFAENLPGAPDNINLAPDGTFWI  278 (370)
Q Consensus       210 -~~~~---~~~~~~~p~gi~~~~dg----~~l~v~~~~~-l~~~~~~~~~~~~--~~~~~~~~~g~p~~i~~d~~G~lwv  278 (370)
                       ....   +.........++++|++    +.+..+...+ |..|+++....+.  ...+ ....+....++++++|++.+
T Consensus       200 ~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~la  278 (316)
T 3bg1_A          200 GQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILA  278 (316)
T ss_dssp             SCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEE
T ss_pred             CccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEE
Confidence             1111   11222345788999986    6566666666 8888876521111  1111 12223345677888887555


Q ss_pred             EE
Q 017520          279 AI  280 (370)
Q Consensus       279 ~~  280 (370)
                      +.
T Consensus       279 s~  280 (316)
T 3bg1_A          279 VS  280 (316)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.56  E-value=0.038  Score=48.86  Aligned_cols=174  Identities=15%  Similarity=0.108  Sum_probs=98.4

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe-CC---e-EEEEEecCCCceeceEEcC--CCcEEEEeCCCc-eEEEc-CCC-e
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ-DG---T-WVNWKFIDSQTLVGLTSTK--EGHLIICDNANG-LHKVS-EDG-V  148 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~-~g---~-~~~~~~~~~~p~~gl~~d~--~G~L~v~~~~~g-i~~~~-~~g-~  148 (370)
                      .-.+++++++|.. ..++.+|.|..|+ ++   + ...+....+... ++++.+  +|+++++....+ |..++ .++ .
T Consensus        11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~   89 (297)
T 2pm7_B           11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKEENGRW   89 (297)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEBSSSCB
T ss_pred             ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEcCCCce
Confidence            4467899998864 4566899999998 32   2 334444455566 899864  377666544444 55555 444 2


Q ss_pred             EEEEeecCCcccccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe---EEEEecCCCCccc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---TTLVADGFYFANG  223 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~---~~~~~~~~~~p~g  223 (370)
                      ..+.. ..+. ...++.+++.++  |.+.++.+                 .++.|..+|..++.   ...+.......+.
T Consensus        90 ~~~~~-~~~h-~~~v~~v~~~p~~~g~~l~s~s-----------------~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~  150 (297)
T 2pm7_B           90 SQIAV-HAVH-SASVNSVQWAPHEYGPMLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGVNS  150 (297)
T ss_dssp             CCCEE-ECCC-SSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEEBCSSSCBCCEEEECCSSCEEE
T ss_pred             EEEEE-eecC-CCceeEEEeCcCCCCcEEEEEE-----------------CCCcEEEEEecCCCceeeeeeecccCccce
Confidence            21111 1111 135788999886  76665533                 34677788865442   1222222334567


Q ss_pred             eEEccC-------------CCEEEEEeCCc-EEEEEeCCCCCC--ceeeeccCCCCCCCceeECCCC
Q 017520          224 VALSRD-------------EDYVVVCESWK-CRKYWLKGERKG--KLETFAENLPGAPDNINLAPDG  274 (370)
Q Consensus       224 i~~~~d-------------g~~l~v~~~~~-l~~~~~~~~~~~--~~~~~~~~~~g~p~~i~~d~~G  274 (370)
                      ++++++             ++.+..+...+ |..|++......  ....+ ....+....+++++++
T Consensus       151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~  216 (297)
T 2pm7_B          151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTV  216 (297)
T ss_dssp             EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCC
T ss_pred             EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCC
Confidence            788876             45566666666 888887653210  11112 1222334567788875

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.55  E-value=0.038  Score=51.71  Aligned_cols=205  Identities=12%  Similarity=0.041  Sum_probs=109.3

Q ss_pred             CcEEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcE-EEEeCCCceEEEc-CCC--eEEEEeecCCccccc
Q 017520           90 GVIYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYVNGSKLRF  162 (370)
Q Consensus        90 G~l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~  162 (370)
                      ..+.+|+.+|.|..++  +++... +....+... ++.+  ++++ +.+..++.|..++ .++  ...+.    +. ...
T Consensus       144 ~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~----~h-~~~  215 (435)
T 1p22_A          144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI----HH-CEA  215 (435)
T ss_dssp             SEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC----CC-CSC
T ss_pred             CEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc----CC-CCc
Confidence            3566777999999999  555433 333344455 7777  4554 4455444566666 556  33332    11 124


Q ss_pred             ccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE----EEecCCCCccceEEccCCCEEEEEeC
Q 017520          163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT----LVADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       163 ~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~----~~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      +..++++  +...++.+                 .++.|..+|..++...    .+.........+++  +++.++.+..
T Consensus       216 v~~l~~~--~~~l~s~s-----------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          216 VLHLRFN--NGMMVTCS-----------------KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             EEEEECC--TTEEEEEE-----------------TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             EEEEEEc--CCEEEEee-----------------CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            5566664  33333322                 3477888887655432    12122223344555  7787888877


Q ss_pred             Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCc
Q 017520          239 WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  317 (370)
Q Consensus       239 ~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (370)
                      .+ |..||+...+  ....+. ...+....+..  +|++.++....                                  
T Consensus       275 dg~i~vwd~~~~~--~~~~~~-~~~~~v~~~~~--~~~~l~~g~~d----------------------------------  315 (435)
T 1p22_A          275 DRTIKVWNTSTCE--FVRTLN-GHKRGIACLQY--RDRLVVSGSSD----------------------------------  315 (435)
T ss_dssp             TSEEEEEETTTCC--EEEEEE-CCSSCEEEEEE--ETTEEEEEETT----------------------------------
T ss_pred             CCeEEEEECCcCc--EEEEEc-CCCCcEEEEEe--CCCEEEEEeCC----------------------------------
Confidence            77 8889876532  122222 22222223444  35544443322                                  


Q ss_pred             eEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEE
Q 017520          318 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKV  367 (370)
Q Consensus       318 g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~  367 (370)
                      +.|..+|. .++.+..+....+    .++.+...+..|..|+.++ .|.+.
T Consensus       316 g~i~iwd~~~~~~~~~~~~h~~----~v~~~~~~~~~l~sg~~dg-~i~vw  361 (435)
T 1p22_A          316 NTIRLWDIECGACLRVLEGHEE----LVRCIRFDNKRIVSGAYDG-KIKVW  361 (435)
T ss_dssp             SCEEEEETTTCCEEEEECCCSS----CEEEEECCSSEEEEEETTS-CEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCcC----cEEEEEecCCEEEEEeCCC-cEEEE
Confidence            34667774 4777777765332    3555555556666666554 34443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.54  E-value=0.0077  Score=61.03  Aligned_cols=130  Identities=6%  Similarity=-0.063  Sum_probs=77.6

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCC-Cc-----eeceEEcCCCc-EEEEeCC---------CceEEE
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDS-QT-----LVGLTSTKEGH-LIICDNA---------NGLHKV  143 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~-~p-----~~gl~~d~~G~-L~v~~~~---------~gi~~~  143 (370)
                      .++...+||.+++.+ +|.|+.++  +|+.+.+..... ..     . ++.+++||+ |.++...         ..++.+
T Consensus        20 ~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~   97 (740)
T 4a5s_A           20 YSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (740)
T ss_dssp             CCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhccccc-ceEECCCCCEEEEEECCeeeEEEccceEEEEE
Confidence            457788888766665 89999999  666554433211 11     2 367899997 4443321         124566


Q ss_pred             c-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC--
Q 017520          144 S-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF--  218 (370)
Q Consensus       144 ~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~--  218 (370)
                      + .+| .+.+... .    ......+++|||+ |.++.                   ++.|+.+|.++++.+.+....  
T Consensus        98 d~~~~~~~~l~~~-~----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~~  153 (740)
T 4a5s_A           98 DLNKRQLITEERI-P----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGKE  153 (740)
T ss_dssp             ETTTTEECCSSCC-C----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCBT
T ss_pred             ECCCCcEEEcccC-C----CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCCc
Confidence            6 555 3332111 1    2356779999995 55552                   246888888776655443211  


Q ss_pred             -----------------CCccceEEccCCCEEEEEe
Q 017520          219 -----------------YFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       219 -----------------~~p~gi~~~~dg~~l~v~~  237 (370)
                                       ....++.++|||+.|.+..
T Consensus       154 ~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          154 DIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             TTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence                             1223588999999777653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.52  E-value=0.0014  Score=55.57  Aligned_cols=135  Identities=13%  Similarity=0.042  Sum_probs=79.8

Q ss_pred             ceeceEEcCCCcEEEEeCCCceEEEc-CCC--------eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccce
Q 017520          119 TLVGLTSTKEGHLIICDNANGLHKVS-EDG--------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYC  189 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--------~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~  189 (370)
                      .. .++++|+|.||.. ....+++++ +++        .+.+-.  .|  .+....+.+|++|.||+..           
T Consensus        43 ~~-~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~--~G--w~~F~a~~fD~~G~LYav~-----------  105 (236)
T 1tl2_A           43 FK-FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGN--GG--WNQFQFLFFDPNGYLYAVS-----------  105 (236)
T ss_dssp             CS-EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEEC--SC--GGGCSEEEECTTSCEEEEE-----------
T ss_pred             ce-eEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecc--cc--cccceEEEECCCCCEEEeC-----------
Confidence            44 7999999999999 455799998 452        122211  12  2235678999999999992           


Q ss_pred             ecccccCCCceEEEEeCCCCeE-------EEE-ecCCCCccceEEccCCCEEEEEeCCc-EEEEEeC-CCCC---Cceee
Q 017520          190 LDILEGKPHGQLLKYDPSSNIT-------TLV-ADGFYFANGVALSRDEDYVVVCESWK-CRKYWLK-GERK---GKLET  256 (370)
Q Consensus       190 ~~~~~~~~~g~l~~~d~~t~~~-------~~~-~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~-~~~~---~~~~~  256 (370)
                              +|.|+|+++.+..-       +.+ ..+.....-|.++|+|. ||... ++ +++-... +...   .....
T Consensus       106 --------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~-dg~lyr~~~P~~~~~~wl~~~~~  175 (236)
T 1tl2_A          106 --------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH-GQQFYKALPPVSNQDNWLARATK  175 (236)
T ss_dssp             --------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE-TTEEEEECCCSSTTCCHHHHCEE
T ss_pred             --------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe-CCcEEecCCCCCCCcccccccce
Confidence                    37999999843211       111 12233446789999998 88877 55 7663322 1100   00111


Q ss_pred             eccCCCCCCCceeECCCCCEEEEE
Q 017520          257 FAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       257 ~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      +....-..-.-+.++++|+||...
T Consensus       176 ~g~~g~~~yr~l~f~~~G~l~~v~  199 (236)
T 1tl2_A          176 IGQGGWDTFKFLFFSSVGTLFGVQ  199 (236)
T ss_dssp             EESSSGGGEEEEEECTTSCEEEEE
T ss_pred             eccCCcceEEEEEECCCCcEEEEe
Confidence            110000001125589999999998

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=97.51  E-value=0.028  Score=56.50  Aligned_cols=109  Identities=15%  Similarity=0.202  Sum_probs=66.2

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCC------------ceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------------TLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~------------p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      +|.||+++.++.|+.+|  +|+...-......            .. +++++ ++.||++.....|+.+| ++| ...-.
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAVW-KGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEEE-CCEEEEEccCCEEEEEECCCCCEeeee
Confidence            68999999888999999  7875543322110            12 45665 68999998777899999 688 33322


Q ss_pred             eec-CCcc-cccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          153 SYV-NGSK-LRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       153 ~~~-~g~~-~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      ... .... ......-.+ .+|.+|++.+...+            ...+.|+.+|.++++..
T Consensus       148 ~~~~~~~~~~~~~~sP~v-~~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~  196 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRV-VNGKVVIGNGGAEF------------GVRGYVTAYDAETGKEA  196 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             cCcCCCCCCccccCCcEE-ECCEEEEEeCCCcc------------CCCCEEEEEECCCCcEE
Confidence            211 1000 000111122 26889887643211            13578999999888754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.50  E-value=0.023  Score=50.26  Aligned_cols=179  Identities=11%  Similarity=0.094  Sum_probs=96.0

Q ss_pred             CcceEEcC--CCc-EEEEecCCeEEEEe--CCe---EEEEEecCCCceeceEEcCC--CcEEE-EeCCCceEEEc-CCC-
Q 017520           81 PEDASMDK--NGV-IYTATRDGWIKRLQ--DGT---WVNWKFIDSQTLVGLTSTKE--GHLII-CDNANGLHKVS-EDG-  147 (370)
Q Consensus        81 P~~i~~d~--~G~-l~v~~~~g~I~~~~--~g~---~~~~~~~~~~p~~gl~~d~~--G~L~v-~~~~~gi~~~~-~~g-  147 (370)
                      -.++++.+  +|. |..++.||.|..|+  +++   ...+........ ++++.++  |.+++ +..++.|..++ +++ 
T Consensus        56 V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN-SVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             EEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             eEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCcee-EEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            35677753  364 55667899999999  453   223322334456 8999886  66555 44444455555 333 


Q ss_pred             -e-EEEEeecCCcccccccceEEcCC-------------CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--
Q 017520          148 -V-ENFLSYVNGSKLRFANDVVEASD-------------GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--  210 (370)
Q Consensus       148 -~-~~~~~~~~g~~~~~~~~l~~d~~-------------G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--  210 (370)
                       . .....   +. ...++.+++.++             ++++++-+                 .++.|..+|..++.  
T Consensus       135 ~~~~~~~~---~h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs-----------------~D~~v~lwd~~~~~~~  193 (297)
T 2pm7_B          135 TTSPIIID---AH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGG-----------------ADNLVKIWKYNSDAQT  193 (297)
T ss_dssp             CBCCEEEE---CC-SSCEEEEEECCCC------------CCEEEEEE-----------------TTSCEEEEEEETTTTE
T ss_pred             ceeeeeee---cc-cCccceEeecCCcccccccCCCCCCcceEEEEc-----------------CCCcEEEEEEcCCCce
Confidence             2 11111   11 124667777775             34444432                 34667777754433  


Q ss_pred             --EE-EEecCCCCccceEEccCC---CEEEEEeCCc-EEEEEeCCCCCCceeeec--cCCCCCCCceeECCCCCEEEEEe
Q 017520          211 --TT-LVADGFYFANGVALSRDE---DYVVVCESWK-CRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       211 --~~-~~~~~~~~p~gi~~~~dg---~~l~v~~~~~-l~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                        .. .+.........++++|++   +.+..+...+ |..|+++...........  ...++....++++++|++.++..
T Consensus       194 ~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~  273 (297)
T 2pm7_B          194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (297)
T ss_dssp             EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEc
Confidence              11 222223346789999985   5455555555 888887653211111111  11222334577889997665543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.46  E-value=0.014  Score=58.61  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=66.8

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCC------------ceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ------------TLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~------------p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      +|.||+++.++.|+.+|  +|+...-......            .. +++++ ++.+|++.....|+.+| ++| ...-.
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEE-CCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            78999999999999999  7876543322110            13 56665 67999998777899999 788 33322


Q ss_pred             eecCCc-ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE
Q 017520          153 SYVNGS-KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (370)
Q Consensus       153 ~~~~g~-~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~  213 (370)
                      ...... .......-.+ .+|.+|++.....+            ...+.|+.+|.++++..-
T Consensus       144 ~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~~W  192 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRV-VKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLAW  192 (668)
T ss_dssp             ECSCTTSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             ccCCCCCcceecCCCEE-ECCEEEEeCCCCCc------------CCCCEEEEEECCCCcEEE
Confidence            211100 0011111123 26789888643211            134789999998887643

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=97.42  E-value=0.012  Score=55.32  Aligned_cols=136  Identities=12%  Similarity=0.067  Sum_probs=83.4

Q ss_pred             CCCceeceEEcC-CCcEE-EEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCcccee
Q 017520          116 DSQTLVGLTSTK-EGHLI-ICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCL  190 (370)
Q Consensus       116 ~~~p~~gl~~d~-~G~L~-v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~  190 (370)
                      ..+.. +|+++| ++++. .+..++.|..++ .++ ...+... .+. ...++.|++.| +|++.++.+           
T Consensus       119 ~~~V~-~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH-~~~V~~l~f~p~~~~~l~s~s-----------  184 (435)
T 4e54_B          119 DRRAT-SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGA-GGSITGLKFNPLNTNQFYASS-----------  184 (435)
T ss_dssp             SSCEE-EEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSS-SCCCCEEEECSSCTTEEEEEC-----------
T ss_pred             CCCEE-EEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCC-CCCEEEEEEeCCCCCEEEEEe-----------
Confidence            34456 899987 45554 455444466666 444 2222221 121 24688999997 677777754           


Q ss_pred             cccccCCCceEEEEeCCCCeEEEEecCCC---CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCC
Q 017520          191 DILEGKPHGQLLKYDPSSNITTLVADGFY---FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPD  266 (370)
Q Consensus       191 ~~~~~~~~g~l~~~d~~t~~~~~~~~~~~---~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~  266 (370)
                            .++.|..+|.+++....+.....   ....++++++++.++.+...+ |..|++++.....   +. .......
T Consensus       185 ------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~~---~~-~h~~~v~  254 (435)
T 4e54_B          185 ------MEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN---LR-MHKKKVT  254 (435)
T ss_dssp             ------SSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCBCCC---SB-CCSSCEE
T ss_pred             ------CCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcceeEE---Ee-cccceEE
Confidence                  35788899998776665543322   235689999999777777766 9999987643221   11 1222345


Q ss_pred             ceeECCCCC
Q 017520          267 NINLAPDGT  275 (370)
Q Consensus       267 ~i~~d~~G~  275 (370)
                      .+++++++.
T Consensus       255 ~v~~~p~~~  263 (435)
T 4e54_B          255 HVALNPCCD  263 (435)
T ss_dssp             EEEECTTCS
T ss_pred             eeeecCCCc
Confidence            577888775

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.41  E-value=0.085  Score=52.80  Aligned_cols=42  Identities=12%  Similarity=0.241  Sum_probs=29.2

Q ss_pred             eEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCC
Q 017520          318 AHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTS  361 (370)
Q Consensus       318 g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~  361 (370)
                      +.+..+|. .|++++.+..+.+.....++.  ..+|++|++.-.+
T Consensus       479 g~l~a~d~~tG~~l~~~~~~~~~~~~p~~~--~~~G~~yva~~~G  521 (668)
T 1kv9_A          479 GQMHAYSADKGEALWQFEAQSGIVAAPMTF--ELAGRQYVAIMAG  521 (668)
T ss_dssp             SEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEEEEC
T ss_pred             ccchhhhhhcChhheEecCCCCcccCceEE--EECCEEEEEEEec
Confidence            56899985 699999998876543333322  5789999875543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.37  E-value=0.039  Score=55.86  Aligned_cols=179  Identities=12%  Similarity=0.092  Sum_probs=92.6

Q ss_pred             ceEEcCCCcEE--EEecCC----eEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCC--------------ce
Q 017520           83 DASMDKNGVIY--TATRDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN--------------GL  140 (370)
Q Consensus        83 ~i~~d~~G~l~--v~~~~g----~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~--------------gi  140 (370)
                      ++++.+||+..  ..+.+|    .|+.++  +|+............ ++++.+|..|+++....              .|
T Consensus       167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v  245 (741)
T 1yr2_A          167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTV  245 (741)
T ss_dssp             EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTTSEEEEEECCCC--------CCCCCEE
T ss_pred             eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEE
Confidence            45777888633  333333    488888  565543211111124 78888884466665332              26


Q ss_pred             EEEc-CCC-e--EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--e-EE
Q 017520          141 HKVS-EDG-V--ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--I-TT  212 (370)
Q Consensus       141 ~~~~-~~g-~--~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--~-~~  212 (370)
                      ++.+ .++ .  ..+... .+.+ ....++.+++||+ |.++....             ......|+.+|.+++  + .+
T Consensus       246 ~~~~lgt~~~~~~lv~~~-~~~~-~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          246 WLHRLGTPQSADQPVFAT-PELP-KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             EEEETTSCGGGCEEEECC-TTCT-TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECCCE
T ss_pred             EEEECCCCchhCEEEecc-CCCC-eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcccE
Confidence            6666 333 1  222221 1111 1345788999996 55553210             012457899988766  4 55


Q ss_pred             EEecCCCCccceEEccCCCEEEEEeCC----c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          213 LVADGFYFANGVALSRDEDYVVVCESW----K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~----~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      .+.......... +++||+.+|+....    . |++++++++. +..+.+.........++..+ ++.+++..
T Consensus       311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~  380 (741)
T 1yr2_A          311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGST-PRFDTVVPESKDNLESVGIA-GNRLFASY  380 (741)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSS-CEEEEEECCCSSEEEEEEEE-BTEEEEEE
T ss_pred             EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCc-cccEEEecCCCCeEEEEEEE-CCEEEEEE
Confidence            554433322233 45888888877542    1 9999987642 23333332222222334455 44555554

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.35  E-value=0.023  Score=52.01  Aligned_cols=134  Identities=12%  Similarity=0.027  Sum_probs=78.6

Q ss_pred             CCeEEEEe--CCeEEEEEecCCCceeceEEcC-CCc-EEEEeCC------CceEEEcC-CC-eEEEEeecCCcccccccc
Q 017520           98 DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTK-EGH-LIICDNA------NGLHKVSE-DG-VENFLSYVNGSKLRFAND  165 (370)
Q Consensus        98 ~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~-~G~-L~v~~~~------~gi~~~~~-~g-~~~~~~~~~g~~~~~~~~  165 (370)
                      +..|+.++  +++...+........ .+.+++ +|. |+++...      ..|+.++. .+ .+.+..   ..+...+..
T Consensus       167 ~~~l~~~d~~~g~~~~~~~~~~~~~-~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~---~~~~~~~~~  242 (396)
T 3c5m_A          167 TCRLIKVDIETGELEVIHQDTAWLG-HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE---HAEGESCTH  242 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEEESSCEE-EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC---CCTTEEEEE
T ss_pred             cceEEEEECCCCcEEeeccCCcccc-cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec---cCCCccccc
Confidence            45688888  566655554444455 788888 675 5544322      25888884 34 444322   111124567


Q ss_pred             eEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc-CCCEEEEEeC-----
Q 017520          166 VVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR-DEDYVVVCES-----  238 (370)
Q Consensus       166 l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~-dg~~l~v~~~-----  238 (370)
                      +++++||+ |++....             .....+.|+++|.++++.+.+... ...+ +++++ ||+.++.+..     
T Consensus       243 ~~~spdg~~l~~~~~~-------------~~~~~~~l~~~d~~~g~~~~l~~~-~~~~-~~~s~~dg~~l~~~~~~~p~~  307 (396)
T 3c5m_A          243 EFWIPDGSAMAYVSYF-------------KGQTDRVIYKANPETLENEEVMVM-PPCS-HLMSNFDGSLMVGDGCDAPVD  307 (396)
T ss_dssp             EEECTTSSCEEEEEEE-------------TTTCCEEEEEECTTTCCEEEEEEC-CSEE-EEEECSSSSEEEEEECCC---
T ss_pred             eEECCCCCEEEEEecC-------------CCCccceEEEEECCCCCeEEeeeC-CCCC-CCccCCCCceEEEecCCccee
Confidence            89999996 6555321             001124599999988876554321 1222 78999 9996655431     


Q ss_pred             ----------C-c-EEEEEeCCCC
Q 017520          239 ----------W-K-CRKYWLKGER  250 (370)
Q Consensus       239 ----------~-~-l~~~~~~~~~  250 (370)
                                + . |+++++++.+
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~  331 (396)
T 3c5m_A          308 VADADSYNIENDPFLYVLNTKAKS  331 (396)
T ss_dssp             -------CCCCCCEEEEEETTTTB
T ss_pred             eccccccccCCCCcEEEEecccCc
Confidence                      1 3 9999987643

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.32  E-value=0.02  Score=51.63  Aligned_cols=134  Identities=10%  Similarity=-0.008  Sum_probs=75.4

Q ss_pred             CCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-----CceEEEc-CCC-eEEEEeecCCcccccccceE
Q 017520           98 DGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-----NGLHKVS-EDG-VENFLSYVNGSKLRFANDVV  167 (370)
Q Consensus        98 ~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-----~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~  167 (370)
                      .+.|+.++  +++...+    .... .++++|||+ |+.+...     ..|+.++ .+| ...+... .    . +..++
T Consensus        42 ~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-~----~-~~~~~  110 (347)
T 2gop_A           42 ENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-K----N-IRSLE  110 (347)
T ss_dssp             EEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-S----E-EEEEE
T ss_pred             cceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-C----C-cccee
Confidence            45688888  4555444    3455 789999996 4443322     1377887 556 4444322 1    1 66789


Q ss_pred             EcCCCc-EEEEeCCCCC--CC---ccce--ec--ccccCCCceEEEEeCCCCeE-EEEecCCCCccceEEccCCCEEEEE
Q 017520          168 EASDGS-LYFTVSSSKY--LP---HEYC--LD--ILEGKPHGQLLKYDPSSNIT-TLVADGFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       168 ~d~~G~-l~v~d~~~~~--~~---~~~~--~~--~~~~~~~g~l~~~d~~t~~~-~~~~~~~~~p~gi~~~~dg~~l~v~  236 (370)
                      ++|||+ |+++.....-  ..   ....  .+  -........|+++|.++++. +.+...  ....+++++|| .++.+
T Consensus       111 wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~--~~~~~~~spdg-~~~~~  187 (347)
T 2gop_A          111 WNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP--RFSSGIWHRDK-IVVNV  187 (347)
T ss_dssp             ECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEE--TTCEEEEETTE-EEEEE
T ss_pred             ECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCC--CcccccCCCCe-EEEEE
Confidence            999995 6666321000  00   0000  00  00001135799999988877 555442  66788999999 66666


Q ss_pred             eC---------Cc-EEEEE
Q 017520          237 ES---------WK-CRKYW  245 (370)
Q Consensus       237 ~~---------~~-l~~~~  245 (370)
                      ..         .. |+.++
T Consensus       188 ~~~~~~~~~~~~~~l~~~d  206 (347)
T 2gop_A          188 PHREIIPQYFKFWDIYIWE  206 (347)
T ss_dssp             ECCCSSCCSSCCEEEEEEE
T ss_pred             ecccccccccccccEEEeC
Confidence            43         22 77777

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.29  E-value=0.049  Score=50.73  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC--Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES--WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPD  273 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~--~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  273 (370)
                      .++.|..||..+++.............++++++++.++.+..  .+ |..|+....+  ....+. ...+....++++++
T Consensus       299 ~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~--~v~~l~-gH~~~V~~l~~spd  375 (420)
T 4gga_A          299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMA--KVAELK-GHTSRVLSLTMSPD  375 (420)
T ss_dssp             TTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCC--EEEEEC-CCSSCEEEEEECTT
T ss_pred             CCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCc--EEEEEc-CCCCCEEEEEEcCC
Confidence            457788899988877665555566778889999998777652  34 8888875431  222222 23334556889999


Q ss_pred             CCEEEEEe
Q 017520          274 GTFWIAII  281 (370)
Q Consensus       274 G~lwv~~~  281 (370)
                      |++.++..
T Consensus       376 g~~l~S~s  383 (420)
T 4gga_A          376 GATVASAA  383 (420)
T ss_dssp             SSCEEEEE
T ss_pred             CCEEEEEe
Confidence            97666543

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.24  E-value=0.072  Score=53.48  Aligned_cols=171  Identities=8%  Similarity=0.027  Sum_probs=86.6

Q ss_pred             ceEEcCCCc--EEEEecCC----eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC-------------ce
Q 017520           83 DASMDKNGV--IYTATRDG----WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-------------GL  140 (370)
Q Consensus        83 ~i~~d~~G~--l~v~~~~g----~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-------------gi  140 (370)
                      ++++.+||+  +|..+..|    .|+.++  +|+............ ++++. ||+ |+.+....             .|
T Consensus       133 ~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v  210 (693)
T 3iuj_A          133 QLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTDQHKV  210 (693)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CCCCEE
T ss_pred             EEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCCCcEE
Confidence            456778886  33343333    477777  566433221111123 67787 775 66654431             26


Q ss_pred             EEEc-CCC---eEEEEeecCC-cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--eEE
Q 017520          141 HKVS-EDG---VENFLSYVNG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--ITT  212 (370)
Q Consensus       141 ~~~~-~~g---~~~~~~~~~g-~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--~~~  212 (370)
                      ++.+ .++   -..+... .+ .+ ....++.+++||+ |+++....              .....|+.+|.+++  ..+
T Consensus       211 ~~~~lgt~~~~~~~v~~~-~~~~~-~~~~~~~~SpDg~~l~~~~~~~--------------~~~~~i~~~d~~~~~~~~~  274 (693)
T 3iuj_A          211 YFHRLGTAQEDDRLVFGA-IPAQH-HRYVGATVTEDDRFLLISAANS--------------TSGNRLYVKDLSQENAPLL  274 (693)
T ss_dssp             EEEETTSCGGGCEEEESC-SGGGC-CSEEEEEECTTSCEEEEEEESS--------------SSCCEEEEEETTSTTCCCE
T ss_pred             EEEECCCCcccceEEEec-CCCCC-eEEEEEEEcCCCCEEEEEEccC--------------CCCcEEEEEECCCCCCceE
Confidence            6655 232   1222221 11 11 1234678899996 55554321              12357899987655  455


Q ss_pred             EEecCCCCccceEEccCCCEEEEEeCC----c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC
Q 017520          213 LVADGFYFANGVALSRDEDYVVVCESW----K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT  275 (370)
Q Consensus       213 ~~~~~~~~p~gi~~~~dg~~l~v~~~~----~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~  275 (370)
                      .+......... .++++|+.+|+....    . |++++++++...+.+.+.....   +.+.++.+|+
T Consensus       275 ~l~~~~~~~~~-~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---~~~~~s~~g~  338 (693)
T 3iuj_A          275 TVQGDLDADVS-LVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQ---QVLTVHSGSG  338 (693)
T ss_dssp             EEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---SCEEEEEETT
T ss_pred             EEeCCCCceEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCC---CEEEEEEECC
Confidence            55443222222 267777777776532    2 9999987653333344443222   2224455554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.21  E-value=0.0098  Score=54.37  Aligned_cols=132  Identities=17%  Similarity=0.111  Sum_probs=78.5

Q ss_pred             ecCCeEEEEe--CCe-----------------EEEEEecCCCceeceEEcCCCcEEEEeCCCc--eEEEc-CCC--eEEE
Q 017520           96 TRDGWIKRLQ--DGT-----------------WVNWKFIDSQTLVGLTSTKEGHLIICDNANG--LHKVS-EDG--VENF  151 (370)
Q Consensus        96 ~~~g~I~~~~--~g~-----------------~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~g--i~~~~-~~g--~~~~  151 (370)
                      +.+|.|..++  +++                 ...+....+... +++++++|+++++....+  |..++ .++  +..+
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            4677788888  333                 334444445567 899999998777654545  55556 566  4433


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE---EEEe-------------
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVA-------------  215 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~-------------  215 (370)
                      ..   +.....++.++++++|+..++.+                 .++.|..||...+..   ..+.             
T Consensus       235 ~~---g~h~~~v~~~~~s~~~~~l~s~s-----------------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (355)
T 3vu4_A          235 RR---GLDRADVVDMKWSTDGSKLAVVS-----------------DKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWS  294 (355)
T ss_dssp             EC---TTCCSCEEEEEECTTSCEEEEEE-----------------TTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSC
T ss_pred             Ec---CCCCCcEEEEEECCCCCEEEEEE-----------------CCCEEEEEEccCCCCcccccccceeeccccccccc
Confidence            21   21124678999999998777654                 346777777643321   1100             


Q ss_pred             -------cC-CCCccceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          216 -------DG-FYFANGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       216 -------~~-~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                             .. ......+++++|++.+++....+ +.+|++..
T Consensus       295 ~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          295 LCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             SEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             eeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                   00 00114578999998777776666 77776543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.17  E-value=0.032  Score=55.98  Aligned_cols=181  Identities=8%  Similarity=0.034  Sum_probs=93.3

Q ss_pred             cceEEcCCCcEE--EEecC----CeEEEEe--CCeEE-EEEecCCCceeceEEcCCCc-EEEEeCCCc------------
Q 017520           82 EDASMDKNGVIY--TATRD----GWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGH-LIICDNANG------------  139 (370)
Q Consensus        82 ~~i~~d~~G~l~--v~~~~----g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~-L~v~~~~~g------------  139 (370)
                      .++++.+||+..  ..+..    ..|+.++  +|+.. .-........ ++++++||+ |+.+.....            
T Consensus       124 ~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~  202 (695)
T 2bkl_A          124 GTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGYT  202 (695)
T ss_dssp             EEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGGC
T ss_pred             EEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCCC
Confidence            345777888643  33322    4688888  55543 1001111125 789999997 444443322            


Q ss_pred             -eEEEc-CCC-e-EEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE
Q 017520          140 -LHKVS-EDG-V-ENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (370)
Q Consensus       140 -i~~~~-~~g-~-~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~  214 (370)
                       |++++ .++ . ..+.....+. ......+.+++||+ |.++....              .....|+.++..++..+.+
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGD-PTTFLQSDLSRDGKYLFVYILRG--------------WSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCC-TTCEEEEEECTTSCCEEEEEEET--------------TTEEEEEEECTTCSSCEEE
T ss_pred             EEEEEECCCCchhceEEEecCCC-CEEEEEEEECCCCCEEEEEEeCC--------------CCceEEEEEcCCCCceEEe
Confidence             77777 444 2 1222111111 12455788999995 55553210              0234788888766666666


Q ss_pred             ecCCCCccceEEccCCCEEEEEeC-C---c-EEEEEeCCCCCCceeeeccCC-CCCCCceeECCCCCEEEEEe
Q 017520          215 ADGFYFANGVALSRDEDYVVVCES-W---K-CRKYWLKGERKGKLETFAENL-PGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       215 ~~~~~~p~gi~~~~dg~~l~v~~~-~---~-l~~~~~~~~~~~~~~~~~~~~-~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ............ ++|+ +|+... .   . |++++++++.....+.+.... .....++.++ ++.+++...
T Consensus       268 ~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~  337 (695)
T 2bkl_A          268 VKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYL  337 (695)
T ss_dssp             EECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEE
T ss_pred             ecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEE
Confidence            544333333433 6777 666554 2   2 999988654321223333221 1112345555 556665543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.17  E-value=0.15  Score=47.30  Aligned_cols=142  Identities=9%  Similarity=0.029  Sum_probs=86.4

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe---cCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC--eEEEE
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG--VENFL  152 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g--~~~~~  152 (370)
                      ..|...+++.|-+|. ++.|+.|+  +|+......   ...... +++++++|+++++ ..++.|..++ .++  +..+ 
T Consensus       109 ~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~-sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~-  185 (420)
T 4gga_A          109 NLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM-  185 (420)
T ss_dssp             BCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-
T ss_pred             eeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEE-EEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE-
Confidence            446666666566665 88999999  777654433   223456 9999999986554 4434455566 566  3322 


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEEEecCCCCccceEEccCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~p~gi~~~~dg  230 (370)
                         .+.. ..+..+.  .++++.++.+                 .++.+..+|.....  +..+........++.+++++
T Consensus       186 ---~~h~-~~v~~~s--~~~~~l~sgs-----------------~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g  242 (420)
T 4gga_A          186 ---TSHS-ARVGSLS--WNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  242 (420)
T ss_dssp             ---CCCS-SCEEEEE--EETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ---eCCC-CceEEEe--eCCCEEEEEe-----------------CCCceeEeeecccceeeEEecccccceeeeeecCCC
Confidence               1211 1233333  4566555533                 34667777765432  23333444556788999999


Q ss_pred             CEEEEEeCCc-EEEEEeCCC
Q 017520          231 DYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~  249 (370)
                      +.+......+ +..++....
T Consensus       243 ~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          243 RHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             SEEEEEETTSCEEEEESSCC
T ss_pred             CeeeeeeccccceEEeeccc
Confidence            9777777777 888887543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.17  E-value=0.085  Score=51.86  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=41.2

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecCCC----------ceeceEEcCCCcEEEEeCCCceEEEc-CCC
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQ----------TLVGLTSTKEGHLIICDNANGLHKVS-EDG  147 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~----------p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g  147 (370)
                      +|.||+++..++|+.+|  +|+...-......          .. ++++. ++.+|++.....|+.+| ++|
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~~-~~~v~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEEE-CCEEEEEeCCCEEEEEECCCC
Confidence            68999999756699999  7875533322111          13 56664 68999998777899999 688

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.15  E-value=0.064  Score=50.59  Aligned_cols=146  Identities=8%  Similarity=0.051  Sum_probs=87.2

Q ss_pred             CcceEEcC-CCcEEEEecCCeEEEEe-C------------CeEEEE-----EecCCCceeceEEcCCCcEEE----EeCC
Q 017520           81 PEDASMDK-NGVIYTATRDGWIKRLQ-D------------GTWVNW-----KFIDSQTLVGLTSTKEGHLII----CDNA  137 (370)
Q Consensus        81 P~~i~~d~-~G~l~v~~~~g~I~~~~-~------------g~~~~~-----~~~~~~p~~gl~~d~~G~L~v----~~~~  137 (370)
                      -..+++.+ .|.++++..+| |..++ .            ......     ....+.+. +++++++|++++    +...
T Consensus        39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~spdg~~lav~~~sgs~  116 (434)
T 2oit_A           39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH-HLALSCDNLTLSACMMSSEY  116 (434)
T ss_dssp             CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE-EEEECTTSCEEEEEEEETTT
T ss_pred             ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCccc-EEEEcCCCCEEEEEEeccCC
Confidence            45678876 45666776665 66654 1            011111     11223466 899999998665    3333


Q ss_pred             Cc-eEEEc-CCC----------eEEEEeecCCcccccccceEEcCC-CcEEEEeCCCCCCCccceecccccCCCceEEEE
Q 017520          138 NG-LHKVS-EDG----------VENFLSYVNGSKLRFANDVVEASD-GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKY  204 (370)
Q Consensus       138 ~g-i~~~~-~~g----------~~~~~~~~~g~~~~~~~~l~~d~~-G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~  204 (370)
                      .+ |..++ .++          +..+ ....+. ...+.++++.|+ ++++++.+                 .++.|..|
T Consensus       117 d~~v~iwd~~~~~~~~~~~~~~~~~~-~~~~~h-~~~V~~v~~~p~~~~~las~s-----------------~Dg~v~iw  177 (434)
T 2oit_A          117 GSIIAFFDVRTFSNEAKQQKRPFAYH-KLLKDA-GGMVIDMKWNPTVPSMVAVCL-----------------ADGSIAVL  177 (434)
T ss_dssp             EEEEEEEEHHHHHCTTCSSCCCSEEE-ECCCSG-GGSEEEEEECSSCTTEEEEEE-----------------TTSCEEEE
T ss_pred             CceEEEEEccccccCCcCCcceeeee-eccCCC-CCceEEEEECCCCCCEEEEEE-----------------CCCeEEEE
Confidence            33 44444 211          1111 111111 246788999997 67777643                 35789999


Q ss_pred             eCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeCCc-EEEEEeC
Q 017520          205 DPSSNITTLVA-DGFYFANGVALSRDEDYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       205 d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~  247 (370)
                      |..++...... ........++++++|+.++++...+ |..|+++
T Consensus       178 D~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          178 QVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             EcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            98766443222 2233567899999999888888777 8889876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.14  E-value=0.0058  Score=59.41  Aligned_cols=175  Identities=11%  Similarity=0.012  Sum_probs=100.3

Q ss_pred             CCcceEEcCC------C-cEEEEecCCeEEEEe--CCeE------------EEEEecCCCceeceEEcCCCcEEEEeCCC
Q 017520           80 HPEDASMDKN------G-VIYTATRDGWIKRLQ--DGTW------------VNWKFIDSQTLVGLTSTKEGHLIICDNAN  138 (370)
Q Consensus        80 ~P~~i~~d~~------G-~l~v~~~~g~I~~~~--~g~~------------~~~~~~~~~p~~gl~~d~~G~L~v~~~~~  138 (370)
                      ...++++.++      + .|..++.+|.|..|+  ++..            ..+........ ++++.+++.|..+..++
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~~lasgs~Dg  287 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPTTVVCGFKNG  287 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSSEEEEEETTS
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCCeEEEEeCCC
Confidence            3456777764      3 444566899999998  3321            12222234456 88998776666666555


Q ss_pred             ceEEEc-CCC---eEEEEeecCCcccccccce--EEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          139 GLHKVS-EDG---VENFLSYVNGSKLRFANDV--VEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       139 gi~~~~-~~g---~~~~~~~~~g~~~~~~~~l--~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                      .|..++ .++   ...+...     ...+.++  ++.++| ++.++.+                 .++.|..+|..+++.
T Consensus       288 tV~lWD~~~~~~~~~~~~~H-----~~~V~sv~~~~s~~g~~~laS~S-----------------~D~tvklWD~~~~~~  345 (524)
T 2j04_B          288 FVAEFDLTDPEVPSFYDQVH-----DSYILSVSTAYSDFEDTVVSTVA-----------------VDGYFYIFNPKDIAT  345 (524)
T ss_dssp             EEEEEETTBCSSCSEEEECS-----SSCEEEEEEECCTTSCCEEEEEE-----------------TTSEEEEECGGGHHH
T ss_pred             EEEEEECCCCCCceEEeecc-----cccEEEEEEEcCCCCCeEEEEec-----------------cCCeEEEEECCCCCc
Confidence            566666 444   2222111     1356777  456777 7777754                 457888888765432


Q ss_pred             E-EEecCC--CCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          212 T-LVADGF--YFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       212 ~-~~~~~~--~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      . .+....  .....++++|+++.+..+...+ |..+++.....  ...+. ...+....++++++|.+.++.
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~--~~~l~-gH~~~V~sva~Sp~g~~l~Sg  415 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFA--VHPLV-SRETTITAIGVSRLHPMVLAG  415 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTC--CEEEE-ECSSCEEEEECCSSCCBCEEE
T ss_pred             ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccc--ceeee-cCCCceEEEEeCCCCCeEEEE
Confidence            1 111111  1246799999998655555555 88888654321  12222 233335567888888755443

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.14  E-value=0.14  Score=46.43  Aligned_cols=194  Identities=11%  Similarity=0.040  Sum_probs=100.3

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEE-EEeCC-CceEEEc-CCC--eEEE
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLI-ICDNA-NGLHKVS-EDG--VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~-v~~~~-~gi~~~~-~~g--~~~~  151 (370)
                      ..-.++++++||.+.++..+.++..|+  .++........ ... .+.+..++++. ++... +.|..++ .++  +..+
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~   97 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR-HLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRI   97 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS-CCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC-CeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEE
Confidence            356789999999876655455677777  33322222212 233 45666666544 33333 3455556 556  3332


Q ss_pred             EeecCCcccccccceEEcC-------CCcEEEEeCCCC-CCCccce-----------ecccc-cCCCceEEEEeCCCCe-
Q 017520          152 LSYVNGSKLRFANDVVEAS-------DGSLYFTVSSSK-YLPHEYC-----------LDILE-GKPHGQLLKYDPSSNI-  210 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~-------~G~l~v~d~~~~-~~~~~~~-----------~~~~~-~~~~g~l~~~d~~t~~-  210 (370)
                      .  ..    ..+..+.+++       ++.+++-+.... -....+.           ..... ...+|.|..+|..++. 
T Consensus        98 ~--~~----~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~  171 (355)
T 3vu4_A           98 K--VD----APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGS  171 (355)
T ss_dssp             E--CS----SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC---
T ss_pred             E--CC----CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCc
Confidence            1  11    1233344433       444444443211 0000000           00011 3456788889987654 


Q ss_pred             ----------------EEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC-CCCCCCceeEC
Q 017520          211 ----------------TTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN-LPGAPDNINLA  271 (370)
Q Consensus       211 ----------------~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d  271 (370)
                                      ...+.........+++++||+.+..+...+  |..||+...+  ....+... ..+....++++
T Consensus       172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~--~~~~~~~g~h~~~v~~~~~s  249 (355)
T 3vu4_A          172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGV--LVREFRRGLDRADVVDMKWS  249 (355)
T ss_dssp             ---------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCC--EEEEEECTTCCSCEEEEEEC
T ss_pred             cccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEEcCCCCCcEEEEEEC
Confidence                            333333334567899999999777777666  6677765431  12233211 33345568899


Q ss_pred             CCCCEEEEEec
Q 017520          272 PDGTFWIAIIK  282 (370)
Q Consensus       272 ~~G~lwv~~~~  282 (370)
                      ++|++.++...
T Consensus       250 ~~~~~l~s~s~  260 (355)
T 3vu4_A          250 TDGSKLAVVSD  260 (355)
T ss_dssp             TTSCEEEEEET
T ss_pred             CCCCEEEEEEC
Confidence            99986666543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.02  E-value=0.1  Score=52.39  Aligned_cols=102  Identities=11%  Similarity=-0.017  Sum_probs=58.9

Q ss_pred             cccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC-
Q 017520          162 FANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-  239 (370)
Q Consensus       162 ~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~-  239 (370)
                      ....++++|||+ |.++...             .+.....|+.+|.++++............+++|++||+.++++... 
T Consensus       126 ~~~~~~~SPDg~~la~~~~~-------------~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~  192 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSA-------------SGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQ  192 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEE-------------TTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCC
T ss_pred             EEEEEEECCCCCEEEEEEcC-------------CCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECC
Confidence            345678999996 4444221             0011137999999988765432111124679999999988887532 


Q ss_pred             ---------------c-EEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCE
Q 017520          240 ---------------K-CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTF  276 (370)
Q Consensus       240 ---------------~-l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~l  276 (370)
                                     . |+++++.++.......+... .+....++.+++||+.
T Consensus       193 ~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~  246 (710)
T 2xdw_A          193 QDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY  246 (710)
T ss_dssp             CSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE
T ss_pred             ccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE
Confidence                           1 88888765432112222211 1222346788999973

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=97.02  E-value=0.0096  Score=58.35  Aligned_cols=74  Identities=16%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             ccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEEEEE
Q 017520          159 KLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l~v~  236 (370)
                      .+..|..|++|++|+|||...+..-....     .....+..++.+++.++++..++..  -....|+++++|++.||++
T Consensus       474 ~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            36688999999999999996542111111     1122456789999999988877654  3456799999999988886


Q ss_pred             e
Q 017520          237 E  237 (370)
Q Consensus       237 ~  237 (370)
                      -
T Consensus       549 i  549 (592)
T 3zwu_A          549 I  549 (592)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.85  E-value=0.21  Score=43.68  Aligned_cols=220  Identities=10%  Similarity=-0.036  Sum_probs=113.1

Q ss_pred             CcceEEcCCCcE-EEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCceEEEc--CCC---eEEE
Q 017520           81 PEDASMDKNGVI-YTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS--EDG---VENF  151 (370)
Q Consensus        81 P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~--~~g---~~~~  151 (370)
                      -.++++.++|+. .+|+.+|.|..++  +++... +........ .  +..++.+.++....+..++.  ..+   ...+
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~-~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~  146 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-S--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATL  146 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-E--EEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEE-E--eecCCCEEEEEecCCceEeeecCCCceeEEEE
Confidence            357888888864 5667899999999  565433 322223333 3  33455655544444444443  333   2222


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-----EEecCCCCccceEE
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-----LVADGFYFANGVAL  226 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-----~~~~~~~~p~gi~~  226 (370)
                      ...     ...+..+.+.++|+..++..                 .++.|..+|..+++..     ...........+++
T Consensus       147 ~~~-----~~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~  204 (318)
T 4ggc_A          147 SGH-----SQEVCGLRWAPDGRHLASGG-----------------NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW  204 (318)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEE
T ss_pred             cCc-----cCceEEEEEcCCCCEEEEEe-----------------cCcceeEEECCCCcccccceeeecccCCceEEEEe
Confidence            111     13456778888888766643                 3467888887654321     11111223355677


Q ss_pred             ccCCCEEEEEeCC---c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHH
Q 017520          227 SRDEDYVVVCESW---K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLA  302 (370)
Q Consensus       227 ~~dg~~l~v~~~~---~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~  302 (370)
                      .+++..++....+   + |..++.....   ..... ........+.+.++++..+...+.                   
T Consensus       205 ~~~~~~~~~~~~~~~~~~i~lwd~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~-------------------  261 (318)
T 4ggc_A          205 CPWQSNVLATGGGTSDRHIRIWNVCSGA---CLSAV-DAHSQVCSILWSPHYKELISGHGF-------------------  261 (318)
T ss_dssp             CTTSTTEEEEEECTTTCEEEEEETTTCC---EEEEE-ECSSCEEEEEEETTTTEEEEEECT-------------------
T ss_pred             cCCCCcEEEEEecCCCCEEEEEeccccc---ccccc-cceeeeeeeeecccccceEEEEEc-------------------
Confidence            7765444433222   2 6666654321   11111 111223445667777655543321                   


Q ss_pred             hCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CCE-EEEEeCCCCeEEE
Q 017520          303 AYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DNH-LYVISLTSNFIGK  366 (370)
Q Consensus       303 ~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~-L~~gs~~~~~i~~  366 (370)
                                   ..+.|..+| .+++.+..+....+    .++.+... +|+ |.-|+.. ..|.+
T Consensus       262 -------------~d~~i~iwd~~~~~~~~~l~gH~~----~V~~l~~spdg~~l~S~s~D-~~v~i  310 (318)
T 4ggc_A          262 -------------AQNQLVIWKYPTMAKVAELKGHTS----RVLSLTMSPDGATVASAAAD-ETLRL  310 (318)
T ss_dssp             -------------TTCCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEEEETT-TEEEE
T ss_pred             -------------CCCEEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEecC-CeEEE
Confidence                         013466667 46888888865443    46666654 344 4444433 33433

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=96.72  E-value=0.046  Score=51.57  Aligned_cols=148  Identities=7%  Similarity=0.031  Sum_probs=84.7

Q ss_pred             CCcceEEcCCCcEEE-----EecCCeEEEEe--CC-----e----EEEEE---ecCCCceeceEEcCC-CcEEEE-eCCC
Q 017520           80 HPEDASMDKNGVIYT-----ATRDGWIKRLQ--DG-----T----WVNWK---FIDSQTLVGLTSTKE-GHLIIC-DNAN  138 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v-----~~~~g~I~~~~--~g-----~----~~~~~---~~~~~p~~gl~~d~~-G~L~v~-~~~~  138 (370)
                      ...+++++++|...+     ++.++.|..|+  ++     +    +..+.   .....+. +++++++ ++++++ ..++
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            467899999887555     23678888888  32     1    11121   1234567 8999987 676664 4444


Q ss_pred             ceEEEc-CCCeEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC
Q 017520          139 GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG  217 (370)
Q Consensus       139 gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~  217 (370)
                      .|..++ +++......  .+ ....+..++++++|+..++.+                 .++.|..||.+......+...
T Consensus       173 ~v~iwD~~~~~~~~~~--~~-~~~~v~~v~wspdg~~lasgs-----------------~dg~v~iwd~~~~~~~~~~~~  232 (434)
T 2oit_A          173 SIAVLQVTETVKVCAT--LP-STVAVTSVCWSPKGKQLAVGK-----------------QNGTVVQYLPTLQEKKVIPCP  232 (434)
T ss_dssp             CEEEEEESSSEEEEEE--EC-GGGCEEEEEECTTSSCEEEEE-----------------TTSCEEEECTTCCEEEEECCC
T ss_pred             eEEEEEcCCCcceeec--cC-CCCceeEEEEcCCCCEEEEEc-----------------CCCcEEEEccCCcccccccCC
Confidence            466666 555111111  11 113578899999996544432                 347899999873333322211


Q ss_pred             CC-------CccceEEccCCCEEEEEeCCc--------EEEEEeCC
Q 017520          218 FY-------FANGVALSRDEDYVVVCESWK--------CRKYWLKG  248 (370)
Q Consensus       218 ~~-------~p~gi~~~~dg~~l~v~~~~~--------l~~~~~~~  248 (370)
                      ..       ....+++++++.++.....+.        +..|++..
T Consensus       233 ~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          233 PFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             TTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             cccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            11       235677888776544433221        66777653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.70  E-value=0.2  Score=45.68  Aligned_cols=137  Identities=13%  Similarity=-0.038  Sum_probs=73.0

Q ss_pred             CCcEEEE-ecCCeEEEEe--CCeE-EEEEecCC---CceeceEEcCCCcEEEEeCC------------Cc-eEEEc-CCC
Q 017520           89 NGVIYTA-TRDGWIKRLQ--DGTW-VNWKFIDS---QTLVGLTSTKEGHLIICDNA------------NG-LHKVS-EDG  147 (370)
Q Consensus        89 ~G~l~v~-~~~g~I~~~~--~g~~-~~~~~~~~---~p~~gl~~d~~G~L~v~~~~------------~g-i~~~~-~~g  147 (370)
                      +|.+.++ +.|+.|..||  +|+. .++.....   ... .++|.++|.+.+....            .+ +..++ .+|
T Consensus       192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~-~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg  270 (356)
T 2w18_A          192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC-HKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT  270 (356)
T ss_dssp             STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE-EEEEEETTEEEEEEC------------CCEEEEEEETTTT
T ss_pred             CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE-EEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC
Confidence            5566665 5889999999  6764 44432211   233 4589999987654221            12 22233 334


Q ss_pred             --eEEEEee-cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-CCcc-
Q 017520          148 --VENFLSY-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-YFAN-  222 (370)
Q Consensus       148 --~~~~~~~-~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~~p~-  222 (370)
                        +..+.-. ..|...   ..+..+.+|.+.++-+                 .++.|..+|..+++......+. ..+. 
T Consensus       271 k~l~v~~~~~p~Gh~~---~~lsg~~sg~~lASgS-----------------~DgTIkIWDl~tGk~l~tL~gH~~~vvs  330 (356)
T 2w18_A          271 LSVGVMLYCLPPGQAG---RFLEGDVKDHCAAAIL-----------------TSGTIAIWDLLLGQCTALLPPVSDQHWS  330 (356)
T ss_dssp             EEEEEEEECCCTTCCC---CEEEEEEETTEEEEEE-----------------TTSCEEEEETTTCSEEEEECCC--CCCC
T ss_pred             EEEEEEEeeccCCCcc---eeEccccCCCEEEEEc-----------------CCCcEEEEECCCCcEEEEecCCCCCeEE
Confidence              2211100 011100   0111222233333322                 4578999999988765544432 2334 


Q ss_pred             ceEEccCCCEEEEEeCCc-EEEEEe
Q 017520          223 GVALSRDEDYVVVCESWK-CRKYWL  246 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~-l~~~~~  246 (370)
                      .++|+|||+.|+-+..++ |..|++
T Consensus       331 ~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          331 FVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEECCCCCEEEEEECCCcEEEecC
Confidence            479999999777666666 777764

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=96.58  E-value=0.42  Score=43.53  Aligned_cols=174  Identities=10%  Similarity=-0.029  Sum_probs=82.7

Q ss_pred             CCeEEEEe---CCeEE-EEEecCCCceeceEEcC---CCcEEEEeCCCceEEE-c-CCC--eEEEEeecCCcccccccce
Q 017520           98 DGWIKRLQ---DGTWV-NWKFIDSQTLVGLTSTK---EGHLIICDNANGLHKV-S-EDG--VENFLSYVNGSKLRFANDV  166 (370)
Q Consensus        98 ~g~I~~~~---~g~~~-~~~~~~~~p~~gl~~d~---~G~L~v~~~~~gi~~~-~-~~g--~~~~~~~~~g~~~~~~~~l  166 (370)
                      ++.|..++   +|+.. .......... .++|.+   ++.++++....+..++ + ++|  ++.+...  ......+..+
T Consensus       156 d~~V~~~~~s~dG~~~~s~~~~~~~v~-~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~v  232 (356)
T 2w18_A          156 DQQVEVMTFAEDGGGKENQFLMPPEET-ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHK  232 (356)
T ss_dssp             TCEEEEEEECTTSCEEEEEEECCCSSC-EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEE
T ss_pred             CCcEEEEEECCCCceeeeeccCCCcee-eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEE
Confidence            55566665   45432 2222222223 445554   7788887656565555 5 667  4555321  1112356677


Q ss_pred             EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CC---CCccceEEccCCCEEEEEeCCc-E
Q 017520          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF---YFANGVALSRDEDYVVVCESWK-C  241 (370)
Q Consensus       167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~---~~p~gi~~~~dg~~l~v~~~~~-l  241 (370)
                      ++.|+|.+.++.+....     ...+......+.+..+|+++++...... .+   ....-+..+.++..+..+..++ |
T Consensus       233 afSpdG~~lvs~s~~~~-----~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTI  307 (356)
T 2w18_A          233 AYSEMGLLFIVLSHPCA-----KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTI  307 (356)
T ss_dssp             EEEETTEEEEEEC-----------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCE
T ss_pred             EECCCCCEEEEeccCCC-----cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcE
Confidence            89999987765332000     0112233456778888998876532210 00   0001122233344333334455 8


Q ss_pred             EEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          242 RKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ..+|+...+.  ...+.......-..+++++||.+.++..
T Consensus       308 kIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~LaSGS  345 (356)
T 2w18_A          308 AIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHLLAGQ  345 (356)
T ss_dssp             EEEETTTCSE--EEEECCC--CCCCEEEECSSSSEEEEEC
T ss_pred             EEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEEEEEE
Confidence            8899865421  2222211111122378999998666543

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=96.57  E-value=0.021  Score=55.99  Aligned_cols=100  Identities=20%  Similarity=0.315  Sum_probs=66.6

Q ss_pred             CCCcCCCcceEEcC-CCcEEEEec----------------------CCeEEEEe-C-C-------eEEEEEec-------
Q 017520           75 EGSVNHPEDASMDK-NGVIYTATR----------------------DGWIKRLQ-D-G-------TWVNWKFI-------  115 (370)
Q Consensus        75 ~~~~~~P~~i~~d~-~G~l~v~~~----------------------~g~I~~~~-~-g-------~~~~~~~~-------  115 (370)
                      ...+..||++.+++ +|.+|++..                      .|+|+++. + +       ++..+...       
T Consensus       380 AT~f~RpEgi~~~p~~g~vY~a~Tn~~~rg~~~~~~~~~np~~~n~~G~I~r~~~~~~d~~a~~f~w~~~v~~g~p~~~~  459 (592)
T 3zwu_A          380 ATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHASKTFAWDLFVVAGNPSVHA  459 (592)
T ss_dssp             CCCEECEEEEEECTTTCCEEEEECCBTTTTSTTCCCBTTBCCSSBSSCEEEEEEEGGGCTTCSEEEEEEEEECCCTTTST
T ss_pred             eEEEeccceeEEcCCCCEEEEEecCCcccccCcccccccccccCCcceeEEEEecCCCccccceeEEEEEEeccCccccc
Confidence            34578999999996 899999852                      37899997 1 1       22333210       


Q ss_pred             ---------------CCCceeceEEcCCCcEEEEeCCC-------------ceEEEc-CCC-eEEEEeecCCcccccccc
Q 017520          116 ---------------DSQTLVGLTSTKEGHLIICDNAN-------------GLHKVS-EDG-VENFLSYVNGSKLRFAND  165 (370)
Q Consensus       116 ---------------~~~p~~gl~~d~~G~L~v~~~~~-------------gi~~~~-~~g-~~~~~~~~~g~~~~~~~~  165 (370)
                                     ...|- .|++|++|+|||++-..             .++.++ .+| ++.+.....+   ..+.+
T Consensus       460 ~~~~~~~~~~~~~~~f~~PD-NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~g---aE~TG  535 (592)
T 3zwu_A          460 GTPKGGSSNITPQNMFNSPD-GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIG---CEVTG  535 (592)
T ss_dssp             TSGGGCCTTCCTTTCCCCEE-EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTT---CEEEE
T ss_pred             ccccccccccCCCCCccCCc-ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCC---ccCcC
Confidence                           12467 89999999999996431             255666 456 6666544333   34667


Q ss_pred             eEEcCCC-cEEEEe
Q 017520          166 VVEASDG-SLYFTV  178 (370)
Q Consensus       166 l~~d~~G-~l~v~d  178 (370)
                      ++++||| +||+.-
T Consensus       536 ~~fspDg~tlfvni  549 (592)
T 3zwu_A          536 ISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             eeECCCCCEEEEEE
Confidence            8999998 477663

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.46  E-value=0.5  Score=47.25  Aligned_cols=103  Identities=12%  Similarity=0.041  Sum_probs=58.0

Q ss_pred             cccceEEcCCCc-E-EEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEeC
Q 017520          162 FANDVVEASDGS-L-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       162 ~~~~l~~d~~G~-l-~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      .+.+++++|||+ | |..+.+              +.....|+.+|.++++..... ... ...+++|+ ||+.++++..
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~--------------G~~~~~i~v~dl~tg~~~~~~~~~~-k~~~~~Ws-Dg~~l~y~~~  193 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLA--------------GSDWREIHLMDVESKQPLETPLKDV-KFSGISWL-GNEGFFYSSY  193 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECS--------------SCCEEEEEEEETTTCSEEEEEEEEE-ESCCCEEE-TTTEEEEEES
T ss_pred             EEEEEEECCCCCEEEEEEecC--------------CCceEEEEEEECCCCCCCccccCCc-eeccEEEe-CCCEEEEEEe
Confidence            456678999996 3 333322              012247899999988754321 111 13578899 9998888754


Q ss_pred             C----------c----EEEEEeCCCCCCceeeeccCC--CCCCCceeECCCCC-EEEEE
Q 017520          239 W----------K----CRKYWLKGERKGKLETFAENL--PGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       239 ~----------~----l~~~~~~~~~~~~~~~~~~~~--~g~p~~i~~d~~G~-lwv~~  280 (370)
                      .          +    |+++++.++.......+....  +..-.++.+++||+ +.+..
T Consensus       194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~  252 (693)
T 3iuj_A          194 DKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISA  252 (693)
T ss_dssp             SCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEE
T ss_pred             cCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3          1    888887654222222322111  11122467899997 44443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=96.31  E-value=0.49  Score=41.27  Aligned_cols=142  Identities=10%  Similarity=0.011  Sum_probs=83.8

Q ss_pred             cceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEe---cCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEEE
Q 017520           82 EDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFL  152 (370)
Q Consensus        82 ~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~~  152 (370)
                      ..|+..+++.|-+| .++.|..|+  +|+......   ...... ++++.++|+.+++....| |..++ +++  +..+.
T Consensus        29 ~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~  106 (318)
T 4ggc_A           29 NLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT  106 (318)
T ss_dssp             BCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCEEEEEECCCcEEEeecCCceeEEEec
Confidence            45778777755555 488999999  676544332   223456 899999998766544445 55555 566  33321


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe--EEEEecCCCCccceEEccCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI--TTLVADGFYFANGVALSRDE  230 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~--~~~~~~~~~~p~gi~~~~dg  230 (370)
                          +.   ......+..++.+.++.+                 ..+.+..++..++.  ...+.........+++++++
T Consensus       107 ----~h---~~~~~~~~~~~~~l~s~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (318)
T 4ggc_A          107 ----SH---SARVGSLSWNSYILSSGS-----------------RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG  162 (318)
T ss_dssp             ----CC---SSCEEEEEEETTEEEEEE-----------------TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred             ----Cc---cceEEEeecCCCEEEEEe-----------------cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence                11   111223444555555432                 23455555554332  22333334456678889999


Q ss_pred             CEEEEEeCCc-EEEEEeCCC
Q 017520          231 DYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~~  249 (370)
                      +.++.+...+ |..||+...
T Consensus       163 ~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          163 RHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             SEEEEEETTSCEEEEESSCB
T ss_pred             CEEEEEecCcceeEEECCCC
Confidence            9777777777 888887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.13  Score=46.81  Aligned_cols=108  Identities=7%  Similarity=0.094  Sum_probs=61.4

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecC--CCceeceE---EcCCCcEEEEe--CCCceEEEc-CCCeEEEEeecCCc
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID--SQTLVGLT---STKEGHLIICD--NANGLHKVS-EDGVENFLSYVNGS  158 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~--~~p~~gl~---~d~~G~L~v~~--~~~gi~~~~-~~g~~~~~~~~~g~  158 (370)
                      +|.+|+++.+|.|+.++  +|+...-....  ..+. +..   ...+|.+|+..  ..+.|+.++ .+|........+..
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l   88 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL   88 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence            57899999999999999  78766544333  1122 211   01245677765  345688888 56622221111111


Q ss_pred             ccccc----cceEE------cCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          159 KLRFA----NDVVE------ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       159 ~~~~~----~~l~~------d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                      -..+|    ...++      +.+|.+|++..                  +++++.+|..+|+.....
T Consensus        89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~------------------~g~l~ald~~tG~~~W~~  137 (339)
T 2be1_A           89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSM------------------RTIMYTINMLNGEIISAF  137 (339)
T ss_dssp             HTTCSEEEECC----------CCEEEEECEE------------------EEEEEEEETTTCCEEEEE
T ss_pred             eeccccccCCCceeecccccccCCEEEEEec------------------CCEEEEEECCCCcEEEEE
Confidence            00111    11122      25778888854                  478999999988776443

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=96.08  E-value=0.013  Score=56.76  Aligned_cols=58  Identities=16%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             CcCCCcceEEcCCCcEEEEe-c------------CCeEEEEe--CCeEEEEEec--CCCceeceEEcCCCc-EEEEe
Q 017520           77 SVNHPEDASMDKNGVIYTAT-R------------DGWIKRLQ--DGTWVNWKFI--DSQTLVGLTSTKEGH-LIICD  135 (370)
Q Consensus        77 ~~~~P~~i~~d~~G~l~v~~-~------------~g~I~~~~--~g~~~~~~~~--~~~p~~gl~~d~~G~-L~v~~  135 (370)
                      .|.+|..|++|++|.||+++ .            +..|++++  +|+++.+...  ..+|. |+++++|++ |||+-
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn-GiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCcccc-CCEECCCCCEEEEEE
Confidence            47899999999999999954 2            22799998  6888887653  34688 999999995 78864

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=95.92  E-value=1.8  Score=44.14  Aligned_cols=145  Identities=9%  Similarity=0.030  Sum_probs=82.8

Q ss_pred             CCcceEEcC--CCcEEEEecCCeEEEEe-CC-eEEEEEecC-------CCceeceEEcCC--CcEEEEeCC------Cce
Q 017520           80 HPEDASMDK--NGVIYTATRDGWIKRLQ-DG-TWVNWKFID-------SQTLVGLTSTKE--GHLIICDNA------NGL  140 (370)
Q Consensus        80 ~P~~i~~d~--~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~-------~~p~~gl~~d~~--G~L~v~~~~------~gi  140 (370)
                      ...+|++++  .+.+|+++..|.|++-+ .| .++......       .... +|++++.  +.+|++...      .+|
T Consensus        16 ~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~v   94 (789)
T 1sqj_A           16 YITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAAF   94 (789)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCEE
T ss_pred             cEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccEE
Confidence            566788886  47899999888899998 44 465543311       1245 7888864  468997643      456


Q ss_pred             EEEcCCC--eEEEEeecC--C-ccc-ccccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE
Q 017520          141 HKVSEDG--VENFLSYVN--G-SKL-RFANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT  212 (370)
Q Consensus       141 ~~~~~~g--~~~~~~~~~--g-~~~-~~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~  212 (370)
                      ++-...|  ++.+.....  + .+. ..+..|++++.  +.+|+...                  .+.|++-+-....++
T Consensus        95 ~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~------------------~~gl~~S~DgG~TW~  156 (789)
T 1sqj_A           95 YVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTR------------------TEGIWKSSDRAKTWT  156 (789)
T ss_dssp             EEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECS------------------SSCEEEESSTTSSCE
T ss_pred             EEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEec------------------cCCEEEECCCCcccC
Confidence            6665555  555432111  0 000 13456888874  47888742                  245776554334444


Q ss_pred             EEecCC------CCccceEEcc-CCCEEEEEeCC-c-EEE
Q 017520          213 LVADGF------YFANGVALSR-DEDYVVVCESW-K-CRK  243 (370)
Q Consensus       213 ~~~~~~------~~p~gi~~~~-dg~~l~v~~~~-~-l~~  243 (370)
                      .+....      .....+++++ +++.+|++... . |++
T Consensus       157 ~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~~~v~~  196 (789)
T 1sqj_A          157 NVTSIPDAFTNGIGYTSVIFDPERNGTIYASATAPQGMYV  196 (789)
T ss_dssp             EETTSCCCCSTTTCEEEEEECTTSTTCEEEEESSTTCEEE
T ss_pred             CCccCccccCCCCCeEEEEECCCCCCEEEEEEcCCCeEEE
Confidence            433210      1123466676 44568888764 4 554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=95.88  E-value=0.6  Score=42.87  Aligned_cols=66  Identities=8%  Similarity=0.034  Sum_probs=40.2

Q ss_pred             CcceEEcC--------CCcEEE-EecCCeEEEEe--CCe-EEEEEecCCCceeceEEcCCCc-EEE-EeCCCceEEEc-C
Q 017520           81 PEDASMDK--------NGVIYT-ATRDGWIKRLQ--DGT-WVNWKFIDSQTLVGLTSTKEGH-LII-CDNANGLHKVS-E  145 (370)
Q Consensus        81 P~~i~~d~--------~G~l~v-~~~~g~I~~~~--~g~-~~~~~~~~~~p~~gl~~d~~G~-L~v-~~~~~gi~~~~-~  145 (370)
                      -.+|++.+        ||++.+ +..|+.|..|+  ++. ..........+. ++++.|++. +++ +..++-|..++ .
T Consensus       139 v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~~d~~v~~wd~~  217 (393)
T 4gq1_A          139 VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGERNGNIRIFDWT  217 (393)
T ss_dssp             EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred             eEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecCCCCEEEEEECC
Confidence            45677754        565554 45889999998  443 444444455567 899998874 444 44333455555 4


Q ss_pred             CC
Q 017520          146 DG  147 (370)
Q Consensus       146 ~g  147 (370)
                      ++
T Consensus       218 t~  219 (393)
T 4gq1_A          218 LN  219 (393)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=95.87  E-value=1.6  Score=43.42  Aligned_cols=175  Identities=13%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             cceEEcCCCc-EEEEecCCe-------------EEEEe--CCe---EEEEEecC--CCceeceEEcCCCc-EEEEeCCC-
Q 017520           82 EDASMDKNGV-IYTATRDGW-------------IKRLQ--DGT---WVNWKFID--SQTLVGLTSTKEGH-LIICDNAN-  138 (370)
Q Consensus        82 ~~i~~d~~G~-l~v~~~~g~-------------I~~~~--~g~---~~~~~~~~--~~p~~gl~~d~~G~-L~v~~~~~-  138 (370)
                      .++++.+||. |+.++.+..             |++++  ++.   ...+....  .... ++.+++||+ |.++.... 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~-~~~~SpDG~~l~~~~~~~~  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFL-QSDLSRDGKYLFVYILRGW  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEE-EEEECTTSCCEEEEEEETT
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEE-EEEECCCCCEEEEEEeCCC
Confidence            5678888886 455544333             99988  343   22222221  2345 788999996 54443223 


Q ss_pred             ---ceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe---
Q 017520          139 ---GLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI---  210 (370)
Q Consensus       139 ---gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~---  210 (370)
                         .|+.++ +++ .+.+.....     ....... ++|.+|+....              ....+.|+++|.+++.   
T Consensus       250 ~~~~l~~~~~~~~~~~~l~~~~~-----~~~~~~~-~~g~l~~~s~~--------------~~~~~~l~~~d~~~~~~~~  309 (695)
T 2bkl_A          250 SENDVYWKRPGEKDFRLLVKGVG-----AKYEVHA-WKDRFYVLTDE--------------GAPRQRVFEVDPAKPARAS  309 (695)
T ss_dssp             TEEEEEEECTTCSSCEEEEECSS-----CCEEEEE-ETTEEEEEECT--------------TCTTCEEEEEBTTBCSGGG
T ss_pred             CceEEEEEcCCCCceEEeecCCC-----ceEEEEe-cCCcEEEEECC--------------CCCCCEEEEEeCCCCCccC
Confidence               577777 456 665543321     1122233 55557776431              1245789999987665   


Q ss_pred             EEEEecC--CCCccceEEccCCCEEEEEeC-Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          211 TTLVADG--FYFANGVALSRDEDYVVVCES-WK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       211 ~~~~~~~--~~~p~gi~~~~dg~~l~v~~~-~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                      ++.+...  .....+++++ ++ .++++.. .+   |+.+++++.   ..+.+.....+....+..+++|. ++++...
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss  383 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GG-HLSLEYLKDATSEVRVATLKGK---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTS  383 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TT-EEEEEEEETTEEEEEEEETTCC---EEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred             CeEEecCCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC---eeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence            2444332  1223556776 44 4666554 33   677775542   12222101112233455666774 5555433

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=95.39  E-value=0.4  Score=48.37  Aligned_cols=145  Identities=12%  Similarity=0.092  Sum_probs=81.6

Q ss_pred             ceEEcCCCc-EEEEecC-----CeEEEEe--CC--e-EEEEEecCCCceeceEEcCCC-cEEEEeCC----CceEEEc-C
Q 017520           83 DASMDKNGV-IYTATRD-----GWIKRLQ--DG--T-WVNWKFIDSQTLVGLTSTKEG-HLIICDNA----NGLHKVS-E  145 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~~~-----g~I~~~~--~g--~-~~~~~~~~~~p~~gl~~d~~G-~L~v~~~~----~gi~~~~-~  145 (370)
                      ++.+++||+ |.+...+     ..|+.++  ++  + ++.+........ ... +++| .||+....    ..|+.++ .
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~  349 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFV-DGVGDQLWFVSGDGAPLKKIVRVDLS  349 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEECS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEE-eccCCEEEEEECCCCCCCEEEEEeCC
Confidence            567788885 5555432     3788888  55  4 555544333233 333 3566 46666432    2388888 4


Q ss_pred             C--C-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCc
Q 017520          146 D--G-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFA  221 (370)
Q Consensus       146 ~--g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p  221 (370)
                      +  + .+.+.....    ..+.++.++ ++.++++...               .....|+.++.+++..+.+.. .....
T Consensus       350 ~~~~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v  409 (741)
T 1yr2_A          350 GSTPRFDTVVPESK----DNLESVGIA-GNRLFASYIH---------------DAKSQVLAFDLDGKPAGAVSLPGIGSA  409 (741)
T ss_dssp             SSSCEEEEEECCCS----SEEEEEEEE-BTEEEEEEEE---------------TTEEEEEEEETTSCEEEECBCSSSCEE
T ss_pred             CCccccEEEecCCC----CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCceeeccCCCCeEE
Confidence            4  3 444433211    124456665 5677776431               133578888876554444321 23334


Q ss_pred             cceEEccCCCEEEEEeCC--c---EEEEEeCCC
Q 017520          222 NGVALSRDEDYVVVCESW--K---CRKYWLKGE  249 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~--~---l~~~~~~~~  249 (370)
                      .++.+++|++.++++-+.  .   |+.||+.+.
T Consensus       410 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg  442 (741)
T 1yr2_A          410 SGLSGRPGDRHAYLSFSSFTQPATVLALDPATA  442 (741)
T ss_dssp             EEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred             EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence            567788888766655432  2   899997653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=95.35  E-value=0.013  Score=54.08  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             eEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCce
Q 017520          123 LTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (370)
Q Consensus       123 l~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  200 (370)
                      .+++ ++.+|+++..+.++.++ .+| ...-...  +.    +....+..+|.+|++.+                 .++.
T Consensus         5 P~v~-~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~----~~s~p~~~~g~~~v~~s-----------------~dg~   60 (369)
T 2hz6_A            5 VTLP-ETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP----VLQVPTHVEEPAFLPDP-----------------NDGS   60 (369)
T ss_dssp             ---C-TTEEEEEETTSEEEEEETTTCCEEEEEEC--CC----SCCCC-----CCEEECT-----------------TTCC
T ss_pred             Ceee-CCEEEEEcCCCEEEEEECCCCCEEEEecC--CC----ceecceEcCCCEEEEeC-----------------CCCE
Confidence            3453 67899998777899999 788 4332222  21    11222234577777743                 3478


Q ss_pred             EEEEeCCCCeEEEEecCCCCcc----ceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          201 LLKYDPSSNITTLVADGFYFAN----GVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       201 l~~~d~~t~~~~~~~~~~~~p~----gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      |+.+|.++++...... ...+.    ..+++.++ .+|++...+ |+.+|.+++
T Consensus        61 l~a~d~~tG~~~w~~~-~~~~~~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG  112 (369)
T 2hz6_A           61 LYTLGSKNNEGLTKLP-FTIPELVQASPCRSSDG-ILYMGKKQDIWYVIDLLTG  112 (369)
T ss_dssp             EEEC-----CCSEECS-CCHHHHHTTCSCC------CCCCEEEEEEEEECCC--
T ss_pred             EEEEECCCCceeeeee-ccCccccccCceEecCC-EEEEEeCCCEEEEEECCCC
Confidence            9999987665422111 11111    11222233 477766555 888987643

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=94.39  E-value=1.5  Score=43.41  Aligned_cols=120  Identities=13%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             eEEcCCCcEEEEe--cCCeEEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCC-------CceEEEc-CCC-e
Q 017520           84 ASMDKNGVIYTAT--RDGWIKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNA-------NGLHKVS-EDG-V  148 (370)
Q Consensus        84 i~~d~~G~l~v~~--~~g~I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~-------~gi~~~~-~~g-~  148 (370)
                      +++..+|.||+.-  ....++++|  +++++...... .+ -+ +.++-++|+|||....       ..+.++| .++ +
T Consensus       248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~-s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          248 ISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQ-SSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSC-EEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCcccccc-ceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            5666789999865  344799999  66666543211 12 13 4556568999997541       2367788 455 5


Q ss_pred             EEEEeecCCcccccc-cceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE
Q 017520          149 ENFLSYVNGSKLRFA-NDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~-~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~  213 (370)
                      +.+... ...++... +..++..++++|+-....        ..++.......+.+||++++....
T Consensus       327 ~~~~~~-~~~p~~~~~~~~~~~~~~~iyv~Gg~~--------g~~~~~~~~~~v~~yd~~~~~w~~  383 (656)
T 1k3i_A          327 TSLPNA-KVNPMLTADKQGLYRSDNHAWLFGWKK--------GSVFQAGPSTAMNWYYTSGSGDVK  383 (656)
T ss_dssp             EEETTS-CSGGGCCCCTTGGGTTTCSCCEEECGG--------GCEEECCSSSEEEEEECSTTCEEE
T ss_pred             eeCCCc-cccccccccccceeecCCceEEEECCC--------CcEEEecCccceeeeecCCcceee
Confidence            554210 00111110 011222456666553210        001111234578999998776543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.16  E-value=3.3  Score=37.78  Aligned_cols=134  Identities=8%  Similarity=-0.005  Sum_probs=73.4

Q ss_pred             EEEEecCCeEEEEe--CCeEEEEEe------cCCCceeceEEcC--------CCcEEEEeCCCceEEE-c-CCC--eEEE
Q 017520           92 IYTATRDGWIKRLQ--DGTWVNWKF------IDSQTLVGLTSTK--------EGHLIICDNANGLHKV-S-EDG--VENF  151 (370)
Q Consensus        92 l~v~~~~g~I~~~~--~g~~~~~~~------~~~~p~~gl~~d~--------~G~L~v~~~~~gi~~~-~-~~g--~~~~  151 (370)
                      |..+..|+.|..++  .+.......      ..+... ++++.+        ||++++.....+.+++ + .++  ...+
T Consensus       104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~  182 (393)
T 4gq1_A          104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG  182 (393)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee
Confidence            33455788888888  554332211      223456 888875        7888776555554444 4 444  3322


Q ss_pred             EeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--------------
Q 017520          152 LSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--------------  216 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--------------  216 (370)
                      ... .    ..+..+++.|++. +.++.+                 .++.|..||..+++......              
T Consensus       183 ~~~-~----~~v~~v~~~p~~~~~l~~~~-----------------~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~  240 (393)
T 4gq1_A          183 YPL-S----SPGISVQFRPSNPNQLIVGE-----------------RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN  240 (393)
T ss_dssp             EEC-S----SCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred             cCC-C----CCcEEEEECCCCCceEEecC-----------------CCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence            221 1    2456789998874 444432                 34677778876554321100              


Q ss_pred             ------------CCCCccceEEc-cCCCEEEEEeCCc-EEEEEeCC
Q 017520          217 ------------GFYFANGVALS-RDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       217 ------------~~~~p~gi~~~-~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                                  .......+.++ +|++.++.+..++ +..|++..
T Consensus       241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~  286 (393)
T 4gq1_A          241 TLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFA  286 (393)
T ss_dssp             SGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--
T ss_pred             cccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECcc
Confidence                        01122345665 7888777766666 88888754

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=93.43  E-value=7.3  Score=39.34  Aligned_cols=140  Identities=13%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             CCcceEEcCC--CcEEEEecCCeEEEEe-CC-eEEEEEecC------------CCceeceEEcC--CCcEEEEeC-----
Q 017520           80 HPEDASMDKN--GVIYTATRDGWIKRLQ-DG-TWVNWKFID------------SQTLVGLTSTK--EGHLIICDN-----  136 (370)
Q Consensus        80 ~P~~i~~d~~--G~l~v~~~~g~I~~~~-~g-~~~~~~~~~------------~~p~~gl~~d~--~G~L~v~~~-----  136 (370)
                      .-.+|++++.  +.+|+++..|+|++-. .| +++......            .... .|++++  .+.+|++..     
T Consensus        22 ~i~~i~~~p~~~~~~y~~~~~ggv~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~-~ia~dp~~~~~~~~~~g~~~~~  100 (763)
T 3a0f_A           22 FISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTE-SIALDPHNPDRLYLAQGDYVQW  100 (763)
T ss_dssp             CEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCBTTCSSSCCCCCCSEE-EEECCTTCTTCEEEEECSCTTT
T ss_pred             ceeEEEeCCCCCCEEEEEeccCcEEEECCCCCCeeECccCccccccCCCccccccee-EEEECCCCCCEEEEEecccccC
Confidence            5678899874  4799999778899998 44 455543311            1234 688886  357999764     


Q ss_pred             --CCceEEEcCCC--eEEEEeecC-C-c-ccc-cccceEEcCC--CcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          137 --ANGLHKVSEDG--VENFLSYVN-G-S-KLR-FANDVVEASD--GSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       137 --~~gi~~~~~~g--~~~~~~~~~-g-~-~~~-~~~~l~~d~~--G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                        ..+|++-...|  ++.+..... + . .-. ....|++++.  +.+|+...                  .+.|++=+-
T Consensus       101 ~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~------------------~~~l~~S~D  162 (763)
T 3a0f_A          101 DPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSR------------------TQGLWRSTD  162 (763)
T ss_dssp             CSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECS------------------SSCEEEESS
T ss_pred             CCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeC------------------CCcEEEECC
Confidence              24566665555  555532111 0 0 001 1246888864  67888742                  246776543


Q ss_pred             CCCeEEEEecCCC-------CccceEEccC-CCEEEEEeCC
Q 017520          207 SSNITTLVADGFY-------FANGVALSRD-EDYVVVCESW  239 (370)
Q Consensus       207 ~t~~~~~~~~~~~-------~p~gi~~~~d-g~~l~v~~~~  239 (370)
                      ....++.+. .+.       ....|++++. .+.+|++...
T Consensus       163 gG~TW~~~~-~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~  202 (763)
T 3a0f_A          163 RAQTWSRMN-QLPDSSTYGIGIISVIFDPKNVGTAYVASHA  202 (763)
T ss_dssp             TTSSCEECT-TSCCCSCTTTCEEEEEECSSSTTCEEEEESS
T ss_pred             CCcCccccc-cCcccCCCccceEEEEECCCCCCEEEEEEeC
Confidence            333444332 221       1234567664 3447777665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.34  E-value=3.8  Score=41.28  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=57.4

Q ss_pred             cccceEEc-CCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCC-eEEEEecCCC-CccceEEccCCCEEEEEe
Q 017520          162 FANDVVEA-SDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN-ITTLVADGFY-FANGVALSRDEDYVVVCE  237 (370)
Q Consensus       162 ~~~~l~~d-~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~-~~~~~~~~~~-~p~gi~~~~dg~~l~v~~  237 (370)
                      ......++ |||+ |.++...             .+.....|+.+|.+++ +.  +...+. ...+++|++||+.++++.
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~-------------~G~~~~~l~v~dl~~g~~~--l~~~~~~~~~~~~WspDg~~l~y~~  239 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDM-------------SGNEVYTIEFKRISDPSQT--IADKVSGTNGEIVWGPDHTSLFYVT  239 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEES-------------SSSSCEEEEEEETTCTTCC--CCCCEEEECSCCEECSSTTEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeC-------------CCCceEEEEEEECCCCCEe--CCccccCceeeEEEecCCCEEEEEE
Confidence            44567999 9996 4444321             0011235999999887 52  111111 135789999998777765


Q ss_pred             CC-----c-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEE
Q 017520          238 SW-----K-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAI  280 (370)
Q Consensus       238 ~~-----~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~  280 (370)
                      ..     . |+++++.++.......+......+-.++..++||+ |.+..
T Consensus       240 ~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          240 KDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             ECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             ECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence            42     2 88888765422222222211122223456789996 44444

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=93.03  E-value=6.3  Score=39.70  Aligned_cols=111  Identities=11%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             ceEEc-CCCcE--EEEeCCC----ceEEEc-CCCeEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceecc
Q 017520          122 GLTST-KEGHL--IICDNAN----GLHKVS-EDGVENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLDI  192 (370)
Q Consensus       122 gl~~d-~~G~L--~v~~~~~----gi~~~~-~~g~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~  192 (370)
                      +.+++ +||+.  |..+..+    .|+.++ .+|.+.+.....    ....++++++|| .|+++....           
T Consensus       178 ~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~-----------  242 (751)
T 2xe4_A          178 EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDE-----------  242 (751)
T ss_dssp             EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECT-----------
T ss_pred             eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECC-----------
Confidence            67899 99973  3334321    277777 444011111011    113467899998 576663210           


Q ss_pred             cccCCCceEEEEeCCCCeE--EEEe--cCCCCccceEEccCCCEEEEEeCCc----EEEEEeCCC
Q 017520          193 LEGKPHGQLLKYDPSSNIT--TLVA--DGFYFANGVALSRDEDYVVVCESWK----CRKYWLKGE  249 (370)
Q Consensus       193 ~~~~~~g~l~~~d~~t~~~--~~~~--~~~~~p~gi~~~~dg~~l~v~~~~~----l~~~~~~~~  249 (370)
                        ......|++++..+++.  ..+.  ....+-.++.+++||+.|+++....    |+.++++++
T Consensus       243 --~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          243 --TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             --TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             --CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence              00113688888876532  2222  1122345678999999888876332    888998764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.41  E-value=15  Score=36.53  Aligned_cols=144  Identities=11%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             CCCcEEEEec-----CCeEEEEe--CCeEEEEE-e------cCCC-ceeceEEcC-CCcEEEEeCC-------CceEEEc
Q 017520           88 KNGVIYTATR-----DGWIKRLQ--DGTWVNWK-F------IDSQ-TLVGLTSTK-EGHLIICDNA-------NGLHKVS  144 (370)
Q Consensus        88 ~~G~l~v~~~-----~g~I~~~~--~g~~~~~~-~------~~~~-p~~gl~~d~-~G~L~v~~~~-------~gi~~~~  144 (370)
                      -++.||+--.     ...+++++  +++++... .      +..+ -+ +++.-. +|.|||....       ..+++++
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~h-s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCH-TFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSC-EEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccce-EEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            4678887532     23588888  67777765 2      1112 13 344443 7889997432       2377888


Q ss_pred             -CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CC-
Q 017520          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FY-  219 (370)
Q Consensus       145 -~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~-  219 (370)
                       .+. ++.+... +..  ..-+..++-.+|.||+--...               ..+.+++||+.++.++.+...  .. 
T Consensus       475 ~~t~~W~~~~~~-p~~--R~~h~~~~~~~~~iyv~GG~~---------------~~~~v~~yd~~t~~W~~~~~~g~~p~  536 (695)
T 2zwa_A          475 MKTREWSMIKSL-SHT--RFRHSACSLPDGNVLILGGVT---------------EGPAMLLYNVTEEIFKDVTPKDEFFQ  536 (695)
T ss_dssp             TTTTEEEECCCC-SBC--CBSCEEEECTTSCEEEECCBC---------------SSCSEEEEETTTTEEEECCCSSGGGG
T ss_pred             CCCCcEEECCCC-CCC--cccceEEEEcCCEEEEECCCC---------------CCCCEEEEECCCCceEEccCCCCCCC
Confidence             445 5554322 111  122334443488999884320               111699999999988776531  11 


Q ss_pred             ---CccceEEccCCCEEEEEeCC--------c-EEEEEeCCCC
Q 017520          220 ---FANGVALSRDEDYVVVCESW--------K-CRKYWLKGER  250 (370)
Q Consensus       220 ---~p~gi~~~~dg~~l~v~~~~--------~-l~~~~~~~~~  250 (370)
                         ....++++.+.+.+|+..-.        + +++||+....
T Consensus       537 ~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          537 NSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             SCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             cccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence               12235556553447776421        2 8999987653

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=89.33  E-value=13  Score=34.22  Aligned_cols=125  Identities=9%  Similarity=0.114  Sum_probs=73.2

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe-C-C-eEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEee
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ-D-G-TWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSY  154 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~-~-g-~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~  154 (370)
                      .+..|++ .+..|+++ .+|.|..|+ . - ............. .+..-+. ++.++...+.++.++ +++ ...+.  
T Consensus        89 ~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~av~~~dG~L~v~dl~~~~~~~~~--  162 (388)
T 1xip_A           89 DVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TLVILNSVNDLSALDLRTKSTKQLA--  162 (388)
T ss_dssp             TEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EEEEEETTSEEEEEETTTCCEEEEE--
T ss_pred             CeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CEEEEECCCCEEEEEccCCcccccc--
Confidence            4788899 45578888 678899998 2 1 1111211122233 4444432 466666566677777 555 43221  


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE---EEEe------c---CCCCcc
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT---TLVA------D---GFYFAN  222 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~---~~~~------~---~~~~p~  222 (370)
                            ..+..++++++| +.++.                  .+|.+..|++++++.   ..+.      .   +-....
T Consensus       163 ------~~Vs~v~WSpkG-~~vg~------------------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~  217 (388)
T 1xip_A          163 ------QNVTSFDVTNSQ-LAVLL------------------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPL  217 (388)
T ss_dssp             ------ESEEEEEECSSE-EEEEE------------------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEE
T ss_pred             ------CCceEEEEcCCc-eEEEE------------------cCCcEEEEcCCCccccccceecCCcccccccCCCeeEE
Confidence                  256789999999 55553                  346777788877764   2231      1   224456


Q ss_pred             ceEEccCCCEEEE
Q 017520          223 GVALSRDEDYVVV  235 (370)
Q Consensus       223 gi~~~~dg~~l~v  235 (370)
                      .|.+.+++.++.+
T Consensus       218 sI~wl~~~~flv~  230 (388)
T 1xip_A          218 SVTILSPQDFLAV  230 (388)
T ss_dssp             EEEESSSSEEEEE
T ss_pred             EEEEecCCeEEEE
Confidence            6788877765443

>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}

Probab=89.27  E-value=2.8  Score=42.47  Aligned_cols=150  Identities=11%  Similarity=0.027  Sum_probs=82.1

Q ss_pred             cceEEcC--CCcEEEEecCCeEEEEe-CC-eEEEEEecCC----CceeceEEcC--CCcEEEEeCCCceEEEcCCC--eE
Q 017520           82 EDASMDK--NGVIYTATRDGWIKRLQ-DG-TWVNWKFIDS----QTLVGLTSTK--EGHLIICDNANGLHKVSEDG--VE  149 (370)
Q Consensus        82 ~~i~~d~--~G~l~v~~~~g~I~~~~-~g-~~~~~~~~~~----~p~~gl~~d~--~G~L~v~~~~~gi~~~~~~g--~~  149 (370)
                      ..|++|+  .+.+|+++ +|.|++-. .| .++.+.....    ... -|.+.+  ++.||++....+|++-+..|  ++
T Consensus       591 ~~i~~d~~~~~~~y~g~-~g~v~~S~DgG~tW~~~~~~lp~~~~~~~-~i~~~~~~~~~l~~~~~~~~l~~S~D~G~tW~  668 (763)
T 3a0f_A          591 TGIAADRVQANTFYVYV-EGDFFVSTDGGKSYTKKGNGLPCCWTYTG-TPVTSNLRAGELWVSVKGVGIYHSTDFGNTFT  668 (763)
T ss_dssp             SCEEECSSSTTCEEEEE-TTEEEEESSTTSBCEEECBTSCCSSCCCE-EEEECSSSTTCEEEEETTTEEEEESSTTSBCE
T ss_pred             ceEEEeccCCCEEEEEc-CCCEEEEeCCCcCccccccCCCcccCccc-cEEECCCCCCcEEEEcCCCeEEEEcCCCCCce
Confidence            3677875  46799995 68898877 34 4555532221    112 155554  67899988666788877655  55


Q ss_pred             EEEeecCCcccc--cccceEEc-C-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec---CCCCcc
Q 017520          150 NFLSYVNGSKLR--FANDVVEA-S-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD---GFYFAN  222 (370)
Q Consensus       150 ~~~~~~~g~~~~--~~~~l~~d-~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~---~~~~p~  222 (370)
                      .+...... ...  .-..+++. + ...||+.-..             +....+.||+-+-....++.+..   .+..+.
T Consensus       669 ~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~G~~-------------~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~  734 (763)
T 3a0f_A          669 ALAGSGSS-LNPAVFSIGAPQTPNATETLFLWGIP-------------SASQPEGLYMSTDNGGLWTRLNDDAHNYGGAT  734 (763)
T ss_dssp             ECTTBTTT-BEEEEEEEECCSSTTSSCEEEEEEEC-------------STTSCSEEEEESSTTSCCEECSCTTCCTBCEE
T ss_pred             EccCCCcc-cccceeEEeeecCCCCCceEEEEEEc-------------ccCCCcEEEEeCCCCCCcEeccCccccCCCcc
Confidence            54321111 000  00011222 2 2468876300             00124678887765555665542   233333


Q ss_pred             ceEEccCC-CEEEEEeCCc-EEEEEeC
Q 017520          223 GVALSRDE-DYVVVCESWK-CRKYWLK  247 (370)
Q Consensus       223 gi~~~~dg-~~l~v~~~~~-l~~~~~~  247 (370)
                      .|+.++.. ..||++..++ |+.-++.
T Consensus       735 ~i~~~p~~~~~v~~~T~GrGi~~g~~~  761 (763)
T 3a0f_A          735 VISGDPRIYGRVYIGMNGRGIICAQAL  761 (763)
T ss_dssp             EEEECTTSTTEEEEEEBSSCEEEEESC
T ss_pred             eEEeCCCCCCEEEEeCCCCeEEEEecC
Confidence            57777743 4588888777 8776654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=88.27  E-value=7.4  Score=38.41  Aligned_cols=109  Identities=16%  Similarity=0.109  Sum_probs=64.2

Q ss_pred             ceEEcC-CCcEEEEeCC------------CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCc
Q 017520          122 GLTSTK-EGHLIICDNA------------NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPH  186 (370)
Q Consensus       122 gl~~d~-~G~L~v~~~~------------~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~  186 (370)
                      ..++.+ +|+||+....            ..+..+| .++ ++.+..... ....+...+++..+|+||+.-..      
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~-~~~~~~~~~~~~~~g~lyv~GG~------  262 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVT-KHDMFCPGISMDGNGQIVVTGGN------  262 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEEC-SCCCSSCEEEECTTSCEEEECSS------
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCC-CCCCccccccCCCCCCEEEeCCC------
Confidence            566666 8899986421            1256777 445 443322111 11223445677789999998542      


Q ss_pred             cceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cceEEccCCCEEEEEeC--C-----c-EEEEEeCCC
Q 017520          187 EYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCES--W-----K-CRKYWLKGE  249 (370)
Q Consensus       187 ~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~gi~~~~dg~~l~v~~~--~-----~-l~~~~~~~~  249 (370)
                                ....+++||+.+++++.+. .+..+   .+.++.+||+ +|+..-  .     . +.+||+...
T Consensus       263 ----------~~~~v~~yd~~t~~W~~~~-~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~  324 (656)
T 1k3i_A          263 ----------DAKKTSLYDSSSDSWIPGP-DMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSK  324 (656)
T ss_dssp             ----------STTCEEEEEGGGTEEEECC-CCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             ----------CCCceEEecCcCCceeECC-CCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCC
Confidence                      1236999999988877653 22222   3455666888 555432  1     2 899997543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=85.37  E-value=22  Score=32.57  Aligned_cols=137  Identities=9%  Similarity=0.045  Sum_probs=76.0

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCe---------EE--EEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-C
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGT---------WV--NWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-E  145 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~---------~~--~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~  145 (370)
                      ....+++.+.+.++++....++..++  +..         ++  ....... +. .+++ ....|+++ .+.+|..++ .
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f-d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF-HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE-ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE-CCCEEEEE-cCCcEEEEEch
Confidence            45668888765555444333566676  211         11  1223334 77 8999 23357777 456788887 3


Q ss_pred             CC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc
Q 017520          146 DG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG  223 (370)
Q Consensus       146 ~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g  223 (370)
                      +-  ...+. ... .   .++++..-+. ++.+..                  .+|.|+.+|.++++...+.   .....
T Consensus       115 sl~~~~~~~-~~~-~---~v~~i~~~~p-~~av~~------------------~dG~L~v~dl~~~~~~~~~---~~Vs~  167 (388)
T 1xip_A          115 ELSEFRTVT-SFE-K---PVFQLKNVNN-TLVILN------------------SVNDLSALDLRTKSTKQLA---QNVTS  167 (388)
T ss_dssp             STTCEEEEE-ECS-S---CEEEEEECSS-EEEEEE------------------TTSEEEEEETTTCCEEEEE---ESEEE
T ss_pred             hhhccCccc-eee-c---ceeeEEecCC-CEEEEE------------------CCCCEEEEEccCCcccccc---CCceE
Confidence            32  12111 111 1   1233333222 233332                  3478888888766654432   24668


Q ss_pred             eEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          224 VALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       224 i~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ++|+++|  +.++..++ +..|++++.
T Consensus       168 v~WSpkG--~~vg~~dg~i~~~~~~~~  192 (388)
T 1xip_A          168 FDVTNSQ--LAVLLKDRSFQSFAWRNG  192 (388)
T ss_dssp             EEECSSE--EEEEETTSCEEEEEEETT
T ss_pred             EEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence            9999999  45555555 888887764

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=84.37  E-value=30  Score=35.01  Aligned_cols=146  Identities=16%  Similarity=0.094  Sum_probs=78.4

Q ss_pred             cceEEcC--CCcEEEEecCCeEEEEeC-C-eEEEEEecCCCc---eeceEE---cCCCcEEEEeCCCceEEEcCCC--eE
Q 017520           82 EDASMDK--NGVIYTATRDGWIKRLQD-G-TWVNWKFIDSQT---LVGLTS---TKEGHLIICDNANGLHKVSEDG--VE  149 (370)
Q Consensus        82 ~~i~~d~--~G~l~v~~~~g~I~~~~~-g-~~~~~~~~~~~p---~~gl~~---d~~G~L~v~~~~~gi~~~~~~g--~~  149 (370)
                      ..++.|+  .+.+|+++ .|.|++-.+ | .++..  ..+.|   . .|+.   ..+|.||++....+|++-...|  ++
T Consensus       593 ~~i~~d~~~~~~~y~g~-~g~i~~S~DgG~tw~~~--~~~~p~~~~-~l~~~~~~~~g~l~~~~~~g~l~~StD~G~twt  668 (789)
T 1sqj_A          593 ANVLSDKVQDGTFYATD-GGKFFVSTDGGKSYAAK--GAGLVTGTS-LMPAVNPWVAGDVWVPVPEGGLFHSTDFGASFT  668 (789)
T ss_dssp             SCEEECSSSTTCEEEEE-TTEEEEESSTTSEEEEE--CBTCCCCCC-CCCEECSSSTTCEEEEETTTEEEEESSTTSBCE
T ss_pred             eeEEecccCCCEEEEEe-CCEEEEEcCCCcCeEcC--ccCCCcccc-eeeecCCCcCCcEEEEeCCCCEEEECCCCcceE
Confidence            4577775  35789995 677888774 3 34432  22222   2 3443   3577899998766788777656  55


Q ss_pred             EEEeecCCccc-----ccccceEEcCC--C-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC--
Q 017520          150 NFLSYVNGSKL-----RFANDVVEASD--G-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY--  219 (370)
Q Consensus       150 ~~~~~~~g~~~-----~~~~~l~~d~~--G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~--  219 (370)
                      .+ ...++..+     ..++.+..++.  + .+|+....               ...+.||+=+-....++.+..++.  
T Consensus       669 ~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~---------------~~~~gv~~S~D~G~tW~~i~~~~~~~  732 (789)
T 1sqj_A          669 RV-GTANATLVSVGAPKSKSDGKKASAPSAVFIWGTDKP---------------GSDIGLYRSDDNGSTWTRVNDQEHNY  732 (789)
T ss_dssp             EC-TTCEEEEEEECCCC---------CCCCEEEEEESST---------------TSCSEEEEESSTTSSCEECCCTTCCT
T ss_pred             Ec-ccceeEEEEecCcccccccccCCCCCcCEEEEEEec---------------CCcceEEEeCCCCccceeecCCCcCc
Confidence            54 22111110     12233344333  3 34544210               123678887655455665544433  


Q ss_pred             -CccceEEccC--CCEEEEEeCCc-EEEEEeCC
Q 017520          220 -FANGVALSRD--EDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       220 -~p~gi~~~~d--g~~l~v~~~~~-l~~~~~~~  248 (370)
                       .++.|..++.  |+ +|++..++ |+.-++.+
T Consensus       733 ~~~~~i~~d~~~~g~-v~v~t~grGi~~~~~~~  764 (789)
T 1sqj_A          733 SGPTMIEADPKVYGR-VYLGTNGRGIVYADLTN  764 (789)
T ss_dssp             TCEEEEEECTTSTTC-EEEEEBSSCEEEEECCC
T ss_pred             CccceeccCCccCCE-EEEEcCCceEEEeccCC
Confidence             2345666763  55 88888886 88888765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=83.83  E-value=21  Score=30.91  Aligned_cols=132  Identities=11%  Similarity=0.107  Sum_probs=69.9

Q ss_pred             CCeEEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCC-----CceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520           98 DGWIKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNA-----NGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (370)
Q Consensus        98 ~g~I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~-----~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l  166 (370)
                      ...++++|  +++++...... .+ -+ +++. -++.||+....     ..+.+++ .++ ++.+... +..+  .-..+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~-p~~r--~~~~~   97 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP-PTPR--DSLAA   97 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC-SSCC--BSCEE
T ss_pred             CceEEEecCCCCCEecCCCCCccccee-EEEE-ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC-Cccc--cceeE
Confidence            34688888  66666553221 11 12 3333 36789886431     3578888 455 6555332 2111  11222


Q ss_pred             EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cceEEccCCCEEEEEeC-----
Q 017520          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCES-----  238 (370)
Q Consensus       167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~gi~~~~dg~~l~v~~~-----  238 (370)
                      +. -+++||+.-....           .......+++||+.+++++.+.. +..+   ...+. -+++ +|+..-     
T Consensus        98 ~~-~~~~iyv~GG~~~-----------~~~~~~~~~~~d~~~~~W~~~~~-~p~~r~~~~~~~-~~~~-iyv~GG~~~~~  162 (306)
T 3ii7_A           98 CA-AEGKIYTSGGSEV-----------GNSALYLFECYDTRTESWHTKPS-MLTQRCSHGMVE-ANGL-IYVCGGSLGNN  162 (306)
T ss_dssp             EE-ETTEEEEECCBBT-----------TBSCCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTE-EEEECCEESCT
T ss_pred             EE-ECCEEEEECCCCC-----------CCcEeeeEEEEeCCCCceEeCCC-CcCCcceeEEEE-ECCE-EEEECCCCCCC
Confidence            22 3678988743200           11234579999999888876632 2222   12222 3444 777642     


Q ss_pred             -----Cc-EEEEEeCCC
Q 017520          239 -----WK-CRKYWLKGE  249 (370)
Q Consensus       239 -----~~-l~~~~~~~~  249 (370)
                           .. +++||+...
T Consensus       163 ~~~~~~~~~~~yd~~~~  179 (306)
T 3ii7_A          163 VSGRVLNSCEVYDPATE  179 (306)
T ss_dssp             TTCEECCCEEEEETTTT
T ss_pred             CcccccceEEEeCCCCC
Confidence                 23 889997654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=82.30  E-value=24  Score=30.67  Aligned_cols=129  Identities=14%  Similarity=0.256  Sum_probs=67.2

Q ss_pred             EEEEe--CCeEEEEEecC-CC-ceeceEEcCCCcEEEEeCC--------CceEEEc-CCC-eEEEEeecCCcccccccce
Q 017520          101 IKRLQ--DGTWVNWKFID-SQ-TLVGLTSTKEGHLIICDNA--------NGLHKVS-EDG-VENFLSYVNGSKLRFANDV  166 (370)
Q Consensus       101 I~~~~--~g~~~~~~~~~-~~-p~~gl~~d~~G~L~v~~~~--------~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l  166 (370)
                      +++++  +++++...... .+ -+ +++.. ++.|||....        ..+.+++ .+. ++.+... +...  .-..+
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r--~~~~~  154 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCLF-GLGEV-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-PIKV--YGHNV  154 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCSC-EEEEE-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-SSCE--ESCEE
T ss_pred             EEEEeCCCCcEEECCCCCcccccc-ceEEE-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-CCcc--cccEE
Confidence            77888  66666553221 11 12 33333 6789986431        1377777 455 5555322 2111  11233


Q ss_pred             EEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc---cceEEccCCCEEEEEeC-----
Q 017520          167 VEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCES-----  238 (370)
Q Consensus       167 ~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p---~gi~~~~dg~~l~v~~~-----  238 (370)
                      ++ -+|.||+--....           .......+++||+++++++.+.. ...+   .+++. -+++ +|+..-     
T Consensus       155 ~~-~~~~iyv~GG~~~-----------~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~-iyv~GG~~~~~  219 (318)
T 2woz_A          155 IS-HNGMIYCLGGKTD-----------DKKCTNRVFIYNPKKGDWKDLAP-MKTPRSMFGVAI-HKGK-IVIAGGVTEDG  219 (318)
T ss_dssp             EE-ETTEEEEECCEES-----------SSCBCCCEEEEETTTTEEEEECC-CSSCCBSCEEEE-ETTE-EEEEEEEETTE
T ss_pred             EE-ECCEEEEEcCCCC-----------CCCccceEEEEcCCCCEEEECCC-CCCCcccceEEE-ECCE-EEEEcCcCCCC
Confidence            33 5788988743100           01124569999999988877642 2222   22232 2444 666541     


Q ss_pred             -Cc-EEEEEeCCC
Q 017520          239 -WK-CRKYWLKGE  249 (370)
Q Consensus       239 -~~-l~~~~~~~~  249 (370)
                       .. +++||++..
T Consensus       220 ~~~~~~~yd~~~~  232 (318)
T 2woz_A          220 LSASVEAFDLKTN  232 (318)
T ss_dssp             EEEEEEEEETTTC
T ss_pred             ccceEEEEECCCC
Confidence             12 889997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	1e-29
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	2e-04
d2p4oa1	302	b.68.6.3 (A:4-305) Hypothetical protein All0351 ho	7e-04
d2dg1a1	319	b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus	0.002

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  114 bits (287), Expect = 1e-29
 Identities = 37/227 (16%), Positives = 68/227 (29%), Gaps = 21/227 (9%)

Query: 140 LHKVSEDGVENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHG 199
                E+     L  +    L   ND+V       Y T       P+    ++  G    
Sbjct: 129 FKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS 188

Query: 200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW--KCRKYWLKGERKGKLETF 257
            +  Y P+     +VA+GF FANG+ +S D  YV + E    K   Y             
Sbjct: 189 FVTYYSPNDV--RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRV 246

Query: 258 AENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG 317
             +     DNI++ P           +  R+   ++       +     + S        
Sbjct: 247 -LSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAENPPGSEVLRIQDILS-------- 297

Query: 318 AHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFI 364
                  E+   +  +    G ++   T        L + ++    +
Sbjct: 298 -------EEPK-VTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHKAL 336

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 29/203 (14%), Positives = 52/203 (25%), Gaps = 12/203 (5%)

Query: 81  PEDASMDKNGVIY-TATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNAN- 138
            E+ +   +G I+ T    G I  +               + GL  T  G L+       
Sbjct: 30  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNAD 89

Query: 139 GLHKVSEDGVENFLS-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP 197
            +  VS    +  +   +      F N +   SD       S        Y   I     
Sbjct: 90  SIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADS--------YRGAIWLIDV 141

Query: 198 HGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETF 257
                       +         F     L R  +++ V  + K     +  +   K    
Sbjct: 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVDSTDKPGEP 201

Query: 258 AENLPG-APDNINLAPDGTFWIA 279
              +     D+     +G  + A
Sbjct: 202 EIFVEQTNIDDFAFDVEGNLYGA 224

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Length = 302

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

 Score = 38.9 bits (89), Expect = 7e-04
 Identities = 19/119 (15%), Positives = 35/119 (29%), Gaps = 19/119 (15%)

Query: 161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYF 220
            F  ++  A DG+++ T                     G+++   P  N     A     
Sbjct: 28  TFLENLASAPDGTIFVTNH-----------------EVGEIVSITPDGNQQI-HATVEGK 69

Query: 221 ANGVALSRDEDYVVVCESWKCRKYWLKGERKGKLETFAENLPGAPDN-INLAPDGTFWI 278
            +G+A + + D V    +          +  G +ET          N I    D  +  
Sbjct: 70  VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLT 128

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Length = 319

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

 Score = 37.4 bits (85), Expect = 0.002
 Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 31/244 (12%)

Query: 51  PVLDEVPQPAVLSATQLQDFIKVGEGSVNHPEDASMDKNGVIY-TATRDGWIKRLQ-DGT 108
           P++ E    + L     + ++++ +  +   E  + D+ G ++     +G I ++  +  
Sbjct: 17  PIISE----SELQTITAEPWLEISKKGLQ-LEGLNFDRQGQLFLLDVFEGNIFKINPETK 71

Query: 109 WVNWKFID-SQTLVGLTSTKEGHLIICDNANG-----LHKVSEDGVENFLSYVNGSKLRF 162
            +   F+        +   K+G L +C   +      +   +E+G        + S    
Sbjct: 72  EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC 131

Query: 163 ANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFAN 222
            +D+V  S G  YFT                   P G +    P     T +      AN
Sbjct: 132 IDDMVFDSKGGFYFT-----------DFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN 180

Query: 223 GVALSRDEDYVVVCESWK--CRKYWL-----KGERKGKLETFAENLPGAPDNINLAPDGT 275
           G+ALS DE  + V E+      +  L       +  G    +       PD+  +  D  
Sbjct: 181 GIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN 240

Query: 276 FWIA 279
            ++A
Sbjct: 241 LYVA 244

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.96
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.94
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.92
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.9
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.84
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.81
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.65
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.57
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.55
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.52
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.52
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.47
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.34
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.3
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.26
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.04
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	98.96
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.89
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.89
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.89
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.87
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.84
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.83
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.81
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.73
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.72
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.7
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.54
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.51
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.43
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.4
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.39
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.36
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.33
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.3
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	98.27
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.23
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.22
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.22
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.22
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	98.17
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.12
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.03
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.03
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.01
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.96
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	97.89
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.87
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	97.82
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	97.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	97.8
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	97.68
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	97.49
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	97.49
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.43
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.39
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.35
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	97.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.11
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.08
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.89
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.85
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.45
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	96.43
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.22
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	96.06
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.03
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	95.85
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.76
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.74
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.74
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.72
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	95.71
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.46
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	94.56
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	94.01
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.48
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	92.59
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	92.35
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	92.33
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	91.66
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	91.43
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	91.0
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	90.73
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	88.3
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	86.27
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.7
d2ebsa2	356	Oligoxyloglucan reducing end-specific cellobiohydr	82.15
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	81.94
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	81.69

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.96  E-value=9.2e-28  Score=218.88  Aligned_cols=259  Identities=21%  Similarity=0.291  Sum_probs=193.3

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEec--------CCeEEEEe--CCeEEEEEe-----cCCCceeceEEcCCCc-EE
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR--------DGWIKRLQ--DGTWVNWKF-----IDSQTLVGLTSTKEGH-LI  132 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~--------~g~I~~~~--~g~~~~~~~-----~~~~p~~gl~~d~~G~-L~  132 (370)
                      ..+++..+ +.+||++++|++|++|+.+.        +|+|++++  ++....+..     ..+.|. ||+++++|+ ||
T Consensus         9 ~~~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~   86 (314)
T d1pjxa_           9 LFTKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLF   86 (314)
T ss_dssp             CCEEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEE
T ss_pred             ceEEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEE
Confidence            45667766 78999999999999999862        57899999  455554432     235699 999999986 88


Q ss_pred             EEeCCCceEEEcCCC-eEEE-EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520          133 ICDNANGLHKVSEDG-VENF-LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       133 v~~~~~gi~~~~~~g-~~~~-~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                      +++..+++++++.+| ...+ .....+.+++.||++++|++|++||+|.........  .........++|++++++ ++
T Consensus        87 vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~--~~~~~~~~~G~v~~~~~d-g~  163 (314)
T d1pjxa_          87 VADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD--YTRSMQEKFGSIYCFTTD-GQ  163 (314)
T ss_dssp             EEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC--CCBTTSSSCEEEEEECTT-SC
T ss_pred             EEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccc--ccceeccCCceEEEEeec-Cc
Confidence            998878999999776 4433 334566778899999999999999999764332222  122233467899999997 55


Q ss_pred             EEEEecCCCCccceEEccCCC----EEEEEeCCc--EEEEEeCCC-CCCceeeecc---CCCCCCCceeECCCCCEEEEE
Q 017520          211 TTLVADGFYFANGVALSRDED----YVVVCESWK--CRKYWLKGE-RKGKLETFAE---NLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       211 ~~~~~~~~~~p~gi~~~~dg~----~l~v~~~~~--l~~~~~~~~-~~~~~~~~~~---~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ...+...+..|||++++++++    .||++++..  |++|+++.. .....+.+..   ...+.|||+++|++|+|||+.
T Consensus       164 ~~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~  243 (314)
T d1pjxa_         164 MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVAN  243 (314)
T ss_dssp             EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEE
T ss_pred             eeEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEE
Confidence            666777889999999998875    699999876  999998644 2333333332   223469999999999999999


Q ss_pred             ecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCC-cEEEEEeCCCCCccccceeEEEEC--CEEEEE
Q 017520          281 IKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDG-TIIRNLVDPTGQLMSFVTSGLQVD--NHLYVI  357 (370)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g-~~~~~~~~~~g~~~~~~t~~~~~~--g~L~~g  357 (370)
                      ...                                  +.|.+||+++ +.+..+..+..    .++.++...  ++||+.
T Consensus       244 ~~~----------------------------------g~I~~~dp~~g~~~~~i~~p~~----~~t~~afg~d~~~lyVt  285 (314)
T d1pjxa_         244 WGS----------------------------------SHIEVFGPDGGQPKMRIRCPFE----KPSNLHFKPQTKTIFVT  285 (314)
T ss_dssp             ETT----------------------------------TEEEEECTTCBSCSEEEECSSS----CEEEEEECTTSSEEEEE
T ss_pred             cCC----------------------------------CEEEEEeCCCCEEEEEEECCCC----CEEEEEEeCCCCEEEEE
Confidence            875                                  5799999884 55666766542    356666653  479999


Q ss_pred             eCCCCeEEEEeCC
Q 017520          358 SLTSNFIGKVQLS  370 (370)
Q Consensus       358 s~~~~~i~~~~~~  370 (370)
                      +..++.|.+++++
T Consensus       286 ~~~~g~i~~~~~~  298 (314)
T d1pjxa_         286 EHENNAVWKFEWQ  298 (314)
T ss_dssp             ETTTTEEEEEECS
T ss_pred             ECCCCcEEEEECC
Confidence            9999999999864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.94  E-value=1.6e-24  Score=197.66  Aligned_cols=231  Identities=20%  Similarity=0.305  Sum_probs=171.8

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe-CCe-E-EEEEecCCCceeceEEcCCCcEEEEeCC-----CceEEEcCCC--e
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ-DGT-W-VNWKFIDSQTLVGLTSTKEGHLIICDNA-----NGLHKVSEDG--V  148 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~-~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~-----~gi~~~~~~g--~  148 (370)
                      ..|++++|++|+||+.+ .+|+|++++ +++ . ..+....+.|. ||++++||+|||++..     .+++.++.++  +
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~  119 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNL  119 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCEEEEecCCCccceeEEEEcCCCcee
Confidence            56899999999999998 789999999 553 3 34455667899 9999999999999743     3578888443  5


Q ss_pred             EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEcc
Q 017520          149 ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSR  228 (370)
Q Consensus       149 ~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~  228 (370)
                      ..+...  ......+|+++++++|++|++|....           .....+.+++++++++.++.+..++..|||+++++
T Consensus       120 ~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~  186 (319)
T d2dg1a1         120 QDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALST  186 (319)
T ss_dssp             EEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECT
T ss_pred             eeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeecc
Confidence            544332  22346789999999999999986311           12345789999999888888888899999999999


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCCCCC-ce---e-eeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHH
Q 017520          229 DEDYVVVCESWK--CRKYWLKGERKG-KL---E-TFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVL  301 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~~~~-~~---~-~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~  301 (370)
                      |++.||++++..  |++|+++..... ..   . .......+.|||+++|++|+|||+...+                  
T Consensus       187 dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~------------------  248 (319)
T d2dg1a1         187 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQ------------------  248 (319)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETT------------------
T ss_pred             ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCC------------------
Confidence            999999999876  999998754211 11   1 1111222359999999999999999876                  


Q ss_pred             HhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCC--ccccceeEEEEC--CEEEEEe
Q 017520          302 AAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ--LMSFVTSGLQVD--NHLYVIS  358 (370)
Q Consensus       302 ~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~--~~~~~t~~~~~~--g~L~~gs  358 (370)
                                      +.|.+||++|+++..+.-|...  ....++.+...+  ..+|+.+
T Consensus       249 ----------------g~V~~~~p~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         249 ----------------GRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             ----------------TEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             ----------------CEEEEECCCCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence                            5799999999999998776531  122345555543  4677765

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.92  E-value=3.1e-23  Score=189.89  Aligned_cols=269  Identities=19%  Similarity=0.278  Sum_probs=186.3

Q ss_pred             CCCcCCCcceEEcCCCcEEEEec-------------CCeEEEEe--C--CeEEEEEec-------CCCceeceEE--cCC
Q 017520           75 EGSVNHPEDASMDKNGVIYTATR-------------DGWIKRLQ--D--GTWVNWKFI-------DSQTLVGLTS--TKE  128 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~~-------------~g~I~~~~--~--g~~~~~~~~-------~~~p~~gl~~--d~~  128 (370)
                      .+...+||+|+++++|.+|+++.             .|.|+.++  +  .+...+...       ...|+ ||.+  +.+
T Consensus        31 ~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~~~d  109 (340)
T d1v04a_          31 KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDD  109 (340)
T ss_dssp             TTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEECTT
T ss_pred             CCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEEcCC
Confidence            45567999999999999998863             38888888  2  233332211       13688 8765  556


Q ss_pred             Cc--EEEEeCC-C----ceEEEcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCce
Q 017520          129 GH--LIICDNA-N----GLHKVSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQ  200 (370)
Q Consensus       129 G~--L~v~~~~-~----gi~~~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~  200 (370)
                      |.  |||.++. .    .++.++.++ ............+..+|++++..+|.+|+|+............+.....+.+.
T Consensus       110 g~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~  189 (340)
T d1v04a_         110 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF  189 (340)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEE
T ss_pred             CcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCcee
Confidence            74  7777753 1    255666444 22333334555678899999999999999975422111111122334456788


Q ss_pred             EEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECC-CCCEE
Q 017520          201 LLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAP-DGTFW  277 (370)
Q Consensus       201 l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~-~G~lw  277 (370)
                      ++.+|+  +..+++.+++.+||||++++|++.+||+++..  |++|++++....+...+. .+++.||||.+|+ +|.+|
T Consensus       190 v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         190 VTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             EEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEE
T ss_pred             EEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEE
Confidence            999987  45677788999999999999999999999987  999999876443443443 4788999999995 78999


Q ss_pred             EEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEE----CCCCcEEEEEeCCCCCccccceeEEEECCE
Q 017520          278 IAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV----AEDGTIIRNLVDPTGQLMSFVTSGLQVDNH  353 (370)
Q Consensus       278 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~----~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~  353 (370)
                      ++.......++.             ..+..       .....++++    ..++++.+.|.+ +|..+...|.+.+.+|+
T Consensus       267 va~~p~~~~~~~-------------~~~~~-------~~~s~v~ri~~~~~~~~~v~~~~~~-~G~~~~~~T~a~~~~g~  325 (340)
T d1v04a_         267 VGCHPNGMRIFF-------------YDAEN-------PPGSEVLRIQDILSEEPKVTVVYAE-NGTVLQGSTVAAVYKGK  325 (340)
T ss_dssp             EEEESCHHHHHS-------------CCTTS-------CCCEEEEEEECTTSSSCEEEEEEEE-CSSSSCSEEEEEEETTE
T ss_pred             EEECCcccchhh-------------hcccC-------CCCceeEEEEeccCCCCeEEEEEeC-CCcEeeceEEEEEECCE
Confidence            998765322111             11111       111234444    246888888887 56668888999999999


Q ss_pred             EEEEeCCCCeEEEEeC
Q 017520          354 LYVISLTSNFIGKVQL  369 (370)
Q Consensus       354 L~~gs~~~~~i~~~~~  369 (370)
                      ||+||+..++| .|+|
T Consensus       326 L~iGs~~~~~l-~C~~  340 (340)
T d1v04a_         326 LLIGTVFHKAL-YCDL  340 (340)
T ss_dssp             EEEEESSSCEE-EEEC
T ss_pred             EEEEeeeCCce-EecC
Confidence            99999999988 6876

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.92  E-value=3.4e-23  Score=186.69  Aligned_cols=225  Identities=17%  Similarity=0.186  Sum_probs=175.1

Q ss_pred             cceEEc-CCCcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeec
Q 017520           82 EDASMD-KNGVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYV  155 (370)
Q Consensus        82 ~~i~~d-~~G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~  155 (370)
                      |+...| ++|.||+.+ .+++|++++  +++.+.+ .....+. +++.+++|+||++.. +|+++++ .+| ++.+....
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~-~~~~~~~-~i~~~~dg~l~va~~-~gl~~~d~~tg~~~~l~~~~   97 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGS-ALAKISDSKQLIASD-DGLFLRDTATGVLTLHAELE   97 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEE-EEEEEETTEEEEEET-TEEEEEETTTCCEEEEECSS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE-ECCCCcE-EEEEecCCCEEEEEe-CccEEeecccceeeEEeeee
Confidence            455777 488999998 788999999  5566554 3445677 899999999999974 6999999 667 77776654


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVV  235 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v  235 (370)
                      .+.+...+|++.+|++|++||++....           +....+.+++++.  ++.+.+..++..|||+++++|++.+|+
T Consensus        98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~d~~~l~~  164 (295)
T d2ghsa1          98 SDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSPDGTTGYF  164 (295)
T ss_dssp             TTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred             cCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecCCCceEEE
Confidence            555667899999999999999975311           1124567888764  677777888899999999999999999


Q ss_pred             EeCCc--EEEEEeCCC---CCCceeeecc--CCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccc
Q 017520          236 CESWK--CRKYWLKGE---RKGKLETFAE--NLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLF  308 (370)
Q Consensus       236 ~~~~~--l~~~~~~~~---~~~~~~~~~~--~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (370)
                      +++..  |++|+++..   ..+....+.+  ...+.||++++|++|+||++...+                         
T Consensus       165 ~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~-------------------------  219 (295)
T d2ghsa1         165 VDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGE-------------------------  219 (295)
T ss_dssp             EETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETT-------------------------
T ss_pred             eecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCC-------------------------
Confidence            99876  999998643   2233333332  345679999999999999999876                         


Q ss_pred             cccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEEC---CEEEEEeCC
Q 017520          309 SQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVD---NHLYVISLT  360 (370)
Q Consensus       309 ~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~---g~L~~gs~~  360 (370)
                               +.|.+||++|+++..+..|..    .+|+.++.+   ++||+.|-.
T Consensus       220 ---------g~V~~~dp~G~~~~~i~lP~~----~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         220 ---------GAVDRYDTDGNHIARYEVPGK----QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ---------TEEEEECTTCCEEEEEECSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred             ---------CceEEecCCCcEeeEecCCCC----ceEEEEEeCCCCCEEEEEECC
Confidence                     579999999999999988763    467777753   689999765

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=7.9e-22  Score=174.30  Aligned_cols=228  Identities=18%  Similarity=0.213  Sum_probs=168.0

Q ss_pred             CCCcceEEcCCCcEEEEe--cCCeEEEEe-CCeEEEEE--ecCCCceeceEEcCCCcEEEEeCCCceEEEcCCC-eEEEE
Q 017520           79 NHPEDASMDKNGVIYTAT--RDGWIKRLQ-DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDG-VENFL  152 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~--~~g~I~~~~-~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g-~~~~~  152 (370)
                      .+|++|++|++|++|+++  .+++|.+++ ++......  .....|. |++++++|+|||++...+++++..++ ...+.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            489999999999999986  567889988 44333332  2345799 99999999999999888888777544 33222


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEccCCC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSRDED  231 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~dg~  231 (370)
                      .   ...+..|+++++|++|++|+++.                 ...++++++..+...... ..++..|.+++++++|+
T Consensus        93 ~---~~~~~~p~~iavd~~g~i~v~d~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  152 (260)
T d1rwia_          93 P---FDGLNYPEGLAVDTQGAVYVADR-----------------GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  152 (260)
T ss_dssp             C---CCSCCSEEEEEECTTCCEEEEEG-----------------GGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC
T ss_pred             e---eeeeeecccccccccceeEeecc-----------------ccccccccccccceeeeeeecccCCcceeeecCCCC
Confidence            1   12246789999999999999985                 346788998876554443 35678899999999998


Q ss_pred             EEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCcccc
Q 017520          232 YVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFS  309 (370)
Q Consensus       232 ~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (370)
                       +|+++...  |.+|+.++.   ....+.....+.|.++++|++|+||++....                          
T Consensus       153 -~~v~~~~~~~i~~~d~~~~---~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~--------------------------  202 (260)
T d1rwia_         153 -VYVTDTDNNRVVKLEAESN---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNT--------------------------  202 (260)
T ss_dssp             -EEEEEGGGTEEEEECTTTC---CEEECCCSSCCSEEEEEECTTCCEEEEETTT--------------------------
T ss_pred             -Eeeeccccccccccccccc---eeeeeeccccCCCccceeeeeeeeeeeecCC--------------------------
Confidence             89988766  999987653   1222222233569999999999999999765                          


Q ss_pred             ccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE-CCEEEEEeCCCCeEEEEe
Q 017520          310 QFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV-DNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       310 ~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~-~g~L~~gs~~~~~i~~~~  368 (370)
                              +.+++++++++....+.. .+  +...+.+... +|+||++...+++|.++.
T Consensus       203 --------~~i~~~~~~~~~~~~~~~-~~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         203 --------NQVVKLLAGSTTSTVLPF-TG--LNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             --------TEEEEECTTCSCCEECCC-CS--CCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             --------CEEEEEeCCCCeEEEEcc-CC--CCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence                    458999998887666533 22  2345556554 589999999999999986

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.89  E-value=4.2e-21  Score=173.35  Aligned_cols=222  Identities=20%  Similarity=0.236  Sum_probs=166.5

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc---CCC-eEEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS---EDG-VENFL  152 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~---~~g-~~~~~  152 (370)
                      .||++++++||+||+++ .+++|++++ +|+.+.+....+.|. ++++++||+||+++.. +.+..++   ..+ ...+.
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            48999999999999998 688999999 898888888888999 9999999999999866 4466665   234 55444


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-----------CCCCc
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-----------GFYFA  221 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-----------~~~~p  221 (370)
                      ....   ...+++++++++|++|+++.                 ..+.++++|+.++.......           ....+
T Consensus       108 ~~~~---~~~~n~i~~~~~g~~~v~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (302)
T d2p4oa1         108 TLPD---AIFLNGITPLSDTQYLTADS-----------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA  167 (302)
T ss_dssp             ECTT---CSCEEEEEESSSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred             ccCC---ccccceeEEccCCCEEeecc-----------------ccccceeeeccCCcceeEecCCccceeeccCccccc
Confidence            4322   35789999999999999986                 45789999998776655432           23456


Q ss_pred             cceEEccCCCEEEEEeCCc--EEEEEeCCCC-CCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHH
Q 017520          222 NGVALSRDEDYVVVCESWK--CRKYWLKGER-KGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIK  298 (370)
Q Consensus       222 ~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~-~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~  298 (370)
                      +|+.++  ++.+|++++..  |++++.++.. ......+.  ....|+++++|++|++|++....               
T Consensus       168 ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~---------------  228 (302)
T d2p4oa1         168 NGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIY---------------  228 (302)
T ss_dssp             EEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTT---------------
T ss_pred             cccccc--CCceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCC---------------
Confidence            777665  56799999877  9999987642 22222222  23469999999999999998765               


Q ss_pred             HHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEE----C-CEEEEEeCCCC
Q 017520          299 HVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQV----D-NHLYVISLTSN  362 (370)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~----~-g~L~~gs~~~~  362 (370)
                                         +.|.+++++|+.........+.  ...+.+.+.    | ++||+++..+.
T Consensus       229 -------------------~~V~~i~p~G~~~~~~~~~~~~--~~pt~vafg~~~~D~~~Lyvtt~~g~  276 (302)
T d2p4oa1         229 -------------------NSVVRIAPDRSTTIIAQAEQGV--IGSTAVAFGQTEGDCTAIYVVTNGGM  276 (302)
T ss_dssp             -------------------CCEEEECTTCCEEEEECGGGTC--TTEEEEEECCSTTTTTEEEEEECTTS
T ss_pred             -------------------CcEEEECCCCCEEEEEecCCCC--CCceEEEEcCCCCCCCEEEEECCCCc
Confidence                               4599999999987776654442  345666663    2 57999876643

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=1.5e-18  Score=154.49  Aligned_cols=234  Identities=15%  Similarity=0.235  Sum_probs=166.0

Q ss_pred             CCCcCCCcceEEcCCCcEEEEe-cCCeEEEEe-CCeEEEEEecC-------CCceeceEEcCC-CcEEEEeC-C-CceEE
Q 017520           75 EGSVNHPEDASMDKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFID-------SQTLVGLTSTKE-GHLIICDN-A-NGLHK  142 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~-------~~p~~gl~~d~~-G~L~v~~~-~-~gi~~  142 (370)
                      .|+|..|.+|++|++|+|||++ .+++|.+++ +|++.......       ..|. +++++.+ +..+++.. . ..|..
T Consensus        19 ~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          19 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccc-cccccccccccceeccCCcccccc
Confidence            3568899999999999999998 788999999 88755433221       2467 7776644 44555433 3 35667


Q ss_pred             EcCCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCC
Q 017520          143 VSEDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFY  219 (370)
Q Consensus       143 ~~~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~  219 (370)
                      ++++| .....   ....+..+.+++++++|++|+++..                 ...+.+++++.+.+..+.  ..+.
T Consensus        98 ~~~~g~~~~~~---~~~~~~~p~~~avd~~G~i~v~~~~-----------------~~~~~~~~~~g~~~~~~g~~~~~~  157 (279)
T d1q7fa_          98 YNQYGQFVRKF---GATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKHLE  157 (279)
T ss_dssp             ECTTSCEEEEE---CTTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTTCS
T ss_pred             ccccccceeec---CCCcccccceeccccCCcEEEEeec-----------------cceeeEeccCCceeeccccccccc
Confidence            77777 33221   2233567889999999999999863                 467889998865554442  3467


Q ss_pred             CccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchh
Q 017520          220 FANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKL  296 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~  296 (370)
                      .|.+++++++++ +|+++...  |.+|+.++..   ...+. ......|.+|++|++|++||+...+             
T Consensus       158 ~~~~i~~d~~g~-i~v~d~~~~~V~~~d~~G~~---~~~~g~~g~~~~P~giavD~~G~i~Vad~~~-------------  220 (279)
T d1q7fa_         158 FPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQY---LRQIGGEGITNYPIGVGINSNGEILIADNHN-------------  220 (279)
T ss_dssp             SEEEEEECSSSE-EEEEEGGGTEEEEEETTCCE---EEEESCTTTSCSEEEEEECTTCCEEEEECSS-------------
T ss_pred             ccceeeecccee-EEeeeccccceeeeecCCce---eeeecccccccCCcccccccCCeEEEEECCC-------------
Confidence            789999999987 89988766  9999987642   22232 1223468999999999999998643             


Q ss_pred             HHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEeCCCCCccccceeE-EEECCEEEEEeCCCCeEEEEeC
Q 017520          297 IKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSG-LQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~-~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                                          ...|..|+++|+.+.++.....  ....+.+ +..+|+||+.+ .+++|.+++.
T Consensus       221 --------------------~~~v~~f~~~G~~~~~~~~~~~--~~~p~~vav~~dG~l~V~~-~n~~v~~fr~  271 (279)
T d1q7fa_         221 --------------------NFNLTIFTQDGQLISALESKVK--HAQCFDVALMDDGSVVLAS-KDYRLYIYRY  271 (279)
T ss_dssp             --------------------SCEEEEECTTSCEEEEEEESSC--CSCEEEEEEETTTEEEEEE-TTTEEEEEEC
T ss_pred             --------------------CcEEEEECCCCCEEEEEeCCCC--CCCEeEEEEeCCCcEEEEe-CCCeEEEEEe
Confidence                                1358889999999988865432  1234444 44579999998 5788988874

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=2.6e-18  Score=151.39  Aligned_cols=183  Identities=16%  Similarity=0.202  Sum_probs=135.4

Q ss_pred             CCcCCCcceEEcCCCcEEEEecCCeEEEEe-CCeEEEEE--ecCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC-eEE
Q 017520           76 GSVNHPEDASMDKNGVIYTATRDGWIKRLQ-DGTWVNWK--FIDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG-VEN  150 (370)
Q Consensus        76 ~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~-~g~~~~~~--~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g-~~~  150 (370)
                      +.+..|++|++|++|+||+++..+.+.++. ++......  .....|. +++++++|++|+++.. ..+++++..+ ...
T Consensus        54 ~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~p~-~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          54 NGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPE-GLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             CSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCCSEE-EEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeeeeeecc-cccccccceeEeeccccccccccccccceee
Confidence            446789999999999999999777777776 44332222  2345789 9999999999999866 4577777555 332


Q ss_pred             EEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~d  229 (370)
                      ...   ...+..|++++++++|++|+++.                 ..++|+++|+++.....+. ..+..|.|++++++
T Consensus       133 ~~~---~~~~~~p~~i~~~~~g~~~v~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~  192 (260)
T d1rwia_         133 VLP---FTGLNDPDGVAVDNSGNVYVTDT-----------------DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEA  192 (260)
T ss_dssp             ECC---CCSCCSCCEEEECTTCCEEEEEG-----------------GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTT
T ss_pred             eee---ecccCCcceeeecCCCCEeeecc-----------------ccccccccccccceeeeeeccccCCCccceeeee
Confidence            211   12246788999999999999986                 3468999999866555543 56788999999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |+ |||++...  |++|+.++..   ...+....-..|.+|++|++|+|||+....
T Consensus       193 g~-l~vsd~~~~~i~~~~~~~~~---~~~~~~~~~~~P~~i~~d~~g~l~vad~~~  244 (260)
T d1rwia_         193 GT-VYVTEHNTNQVVKLLAGSTT---STVLPFTGLNTPLAVAVDSDRTVYVADRGN  244 (260)
T ss_dssp             CC-EEEEETTTTEEEEECTTCSC---CEECCCCSCCCEEEEEECTTCCEEEEEGGG
T ss_pred             ee-eeeeecCCCEEEEEeCCCCe---EEEEccCCCCCeEEEEEeCCCCEEEEECCC
Confidence            98 99999866  9999865532   222221222468999999999999998765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.65  E-value=4.1e-15  Score=134.24  Aligned_cols=154  Identities=14%  Similarity=0.167  Sum_probs=118.8

Q ss_pred             cCCCcceEEcCCCcEEEEec----------------CCeEEEEe-CCeEEEEEecCCCceeceEEcCCCc-----EEEEe
Q 017520           78 VNHPEDASMDKNGVIYTATR----------------DGWIKRLQ-DGTWVNWKFIDSQTLVGLTSTKEGH-----LIICD  135 (370)
Q Consensus        78 ~~~P~~i~~d~~G~l~v~~~----------------~g~I~~~~-~g~~~~~~~~~~~p~~gl~~d~~G~-----L~v~~  135 (370)
                      +..|.++++|++|++|+++.                .|+|++++ +|+...+......|+ ||+++++++     ||+++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            45799999999999999972                35799999 888877777777899 999987763     99998


Q ss_pred             CC-CceEEEc--CCC-eE--EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC
Q 017520          136 NA-NGLHKVS--EDG-VE--NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN  209 (370)
Q Consensus       136 ~~-~gi~~~~--~~g-~~--~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~  209 (370)
                      .. +.|++++  .+| +.  .+.....+.....|.+|++|++|+||+++.                 ..++|++||++++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~-----------------~~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-----------------GSSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-----------------TTTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc-----------------CCCEEEEEeCCCC
Confidence            77 4588887  455 32  222223333345688999999999999975                 3578999999977


Q ss_pred             eEE-EEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520          210 ITT-LVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       210 ~~~-~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      +.. .+......|.++++.+|++.|||++..+  |++++.+.+
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence            653 3444457889999999999999998765  999997543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.57  E-value=2.5e-13  Score=122.58  Aligned_cols=190  Identities=15%  Similarity=0.208  Sum_probs=129.5

Q ss_pred             ceEEcCCCcEEEEeCC-CceEEEcCCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCC
Q 017520          122 GLTSTKEGHLIICDNA-NGLHKVSEDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPH  198 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~-~gi~~~~~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~  198 (370)
                      |+++|++|+||++|.. +.|+++++++  .........    ..+++|++++||++|+++...             ....
T Consensus        44 G~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----~~p~gla~~~dG~l~va~~~~-------------~~~~  106 (319)
T d2dg1a1          44 GLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----ANPAAIKIHKDGRLFVCYLGD-------------FKST  106 (319)
T ss_dssp             EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----SSEEEEEECTTSCEEEEECTT-------------SSSC
T ss_pred             eCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----CCeeEEEECCCCCEEEEecCC-------------Cccc
Confidence            9999999999999966 5699999655  333322212    357899999999999997531             1134


Q ss_pred             ceEEEEeCCCCeEEEEec---CCCCccceEEccCCCEEEEEeCCc--------EEEEEeCCCCCCceeeeccCCCCCCCc
Q 017520          199 GQLLKYDPSSNITTLVAD---GFYFANGVALSRDEDYVVVCESWK--------CRKYWLKGERKGKLETFAENLPGAPDN  267 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~---~~~~p~gi~~~~dg~~l~v~~~~~--------l~~~~~~~~~~~~~~~~~~~~~g~p~~  267 (370)
                      +.+++++..++.......   ....||.++++++|+ +|+++..+        +++++.++.   ..+.+.... ..|++
T Consensus       107 ~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~---~~~~~~~~~-~~pnG  181 (319)
T d2dg1a1         107 GGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR---TVTPIIQNI-SVANG  181 (319)
T ss_dssp             CEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC---CEEEEEEEE-SSEEE
T ss_pred             eeEEEEcCCCceeeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccc---eeEEEeecc-ceeee
Confidence            679999988777665543   345689999999998 99987532        788876653   233333222 35899


Q ss_pred             eeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEE--CCCCcEEEEE-----eCCCCC
Q 017520          268 INLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHV--AEDGTIIRNL-----VDPTGQ  339 (370)
Q Consensus       268 i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~--~~~g~~~~~~-----~~~~g~  339 (370)
                      |+++++|+ +|++....                                  +.|.+|  +.+|......     ....+.
T Consensus       182 ia~s~dg~~lyvad~~~----------------------------------~~I~~~d~~~~g~~~~~~~~~~~~~~~~~  227 (319)
T d2dg1a1         182 IALSTDEKVLWVTETTA----------------------------------NRLHRIALEDDGVTIQPFGATIPYYFTGH  227 (319)
T ss_dssp             EEECTTSSEEEEEEGGG----------------------------------TEEEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             eeeccccceEEEecccC----------------------------------CceEEEEEcCCCceeccccceeeeccCCc
Confidence            99999996 99998654                                  235555  4566544322     111111


Q ss_pred             ccccceeEEE-ECCEEEEEeCCCCeEEEEeC
Q 017520          340 LMSFVTSGLQ-VDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       340 ~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~~  369 (370)
                        .....++. .+|+||++...+..|.+++-
T Consensus       228 --~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         228 --EGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             --SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             --cceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence              12334444 46999999999999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=5e-13  Score=117.10  Aligned_cols=197  Identities=12%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             CCcceEEcC-CCcEEEEe-cCCeEEEEe-CC-eEEEEEe-cCCCceeceEEcC-CCcEEEEeCC-CceEEEcCCC--eEE
Q 017520           80 HPEDASMDK-NGVIYTAT-RDGWIKRLQ-DG-TWVNWKF-IDSQTLVGLTSTK-EGHLIICDNA-NGLHKVSEDG--VEN  150 (370)
Q Consensus        80 ~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g-~~~~~~~-~~~~p~~gl~~d~-~G~L~v~~~~-~gi~~~~~~g--~~~  150 (370)
                      .+.+|++|. ++.||+++ ..+.|++.+ +| ..+.+.. ....|. +|++|. .++||+++.. +.|.+++.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            355688884 67899998 668899998 54 3444443 346799 999995 6689999876 4688888666  444


Q ss_pred             EEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE-ecCCCCccceEEcc
Q 017520          151 FLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV-ADGFYFANGVALSR  228 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~-~~~~~~p~gi~~~~  228 (370)
                      +...    .+..|.+|++|| .|.+|+++..               ....+|++.+.++...+.+ ..++..|+|+++|+
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~---------------~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecC---------------CCCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            4322    135788999997 5789999764               1345799999986655444 46788999999999


Q ss_pred             CCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          229 DEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       229 dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      .++.|||++.+.  |.++++++.   ..+.+...++ .|.+|+++ ++++|+++...                       
T Consensus       177 ~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~~~-~P~~lav~-~~~lYwtd~~~-----------------------  228 (263)
T d1npea_         177 FSSQLCWVDAGTHRAECLNPAQP---GRRKVLEGLQ-YPFAVTSY-GKNLYYTDWKT-----------------------  228 (263)
T ss_dssp             TTTEEEEEETTTTEEEEEETTEE---EEEEEEECCC-SEEEEEEE-TTEEEEEETTT-----------------------
T ss_pred             cCcEEEEEeCCCCEEEEEECCCC---CeEEEECCCC-CcEEEEEE-CCEEEEEECCC-----------------------
Confidence            988999999765  999998774   2333333333 58899998 57899998765                       


Q ss_pred             cccccccCCCceEEEEECCC-CcEEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAED-GTIIRNLVD  335 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~~-g~~~~~~~~  335 (370)
                                 ..|.++|.. |+.+..+..
T Consensus       229 -----------~~I~~~~~~~g~~~~~~~~  247 (263)
T d1npea_         229 -----------NSVIAMDLAISKEMDTFHP  247 (263)
T ss_dssp             -----------TEEEEEETTTTEEEEEECC
T ss_pred             -----------CEEEEEECCCCccceEECC
Confidence                       458999975 777777754

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3e-12  Score=112.23  Aligned_cols=218  Identities=10%  Similarity=0.123  Sum_probs=151.8

Q ss_pred             cEEEEecCCeEEEEe-CC-eEEEEEecCCCceeceEEcC-CCcEEEEeCCC-ceEEEcCCC------eEEEEeecCCccc
Q 017520           91 VIYTATRDGWIKRLQ-DG-TWVNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG------VENFLSYVNGSKL  160 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~-~g-~~~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~-gi~~~~~~g------~~~~~~~~~g~~~  160 (370)
                      .|+++..+ .|.+++ ++ ....+......+. +|.+|. .+.||++|... .|++.+.+|      .+.+..  .  ..
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~~~~~~~~~~~-~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~--~--~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYTSLIPNLRNVV-ALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R--DI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCEEEECSCSSEE-EEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC--S--SC
T ss_pred             EEEEECCC-eEEEEECCCCcceeeeCCCCceE-EEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe--C--CC
Confidence            46677654 599999 44 4455555566788 999986 45799999764 577776333      222221  1  23


Q ss_pred             ccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-EecCCCCccceEEccCCCEEEEEeC
Q 017520          161 RFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-VADGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       161 ~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-~~~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      ..|.+|++|. .++||++|.                 ..++|.+++.++..... +......|.++++++....+||++.
T Consensus        77 ~~p~glAvD~~~~~lY~~d~-----------------~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~  139 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDS-----------------VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDW  139 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEET-----------------TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEEC
T ss_pred             CCcceEEEeeccceEEEEec-----------------CCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEecc
Confidence            5788999996 568999986                 34689999988665544 4456788999999998888999987


Q ss_pred             Cc---EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccC
Q 017520          239 WK---CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITL  314 (370)
Q Consensus       239 ~~---l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (370)
                      +.   |.|.+++|.   ..+.+....-..|.+|++|..+ +||++....                               
T Consensus       140 ~~~~~I~r~~~dGs---~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~-------------------------------  185 (266)
T d1ijqa1         140 GTPAKIKKGGLNGV---DIYSLVTENIQWPNGITLDLLSGRLYWVDSKL-------------------------------  185 (266)
T ss_dssp             SSSCEEEEEETTSC---CEEEEECSSCSCEEEEEEETTTTEEEEEETTT-------------------------------
T ss_pred             CCCcceeEeccCCC---ceecccccccceeeEEEeeccccEEEEecCCc-------------------------------
Confidence            64   999999875   2344433333568999999755 689887553                               


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          315 GGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       315 ~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                         +.|.+++.+|.-...+...... ......+...+++||..+...+.|.++++
T Consensus       186 ---~~I~~~~~dG~~~~~~~~~~~~-~~~p~~lav~~~~ly~td~~~~~I~~~~~  236 (266)
T d1ijqa1         186 ---HSISSIDVNGGNRKTILEDEKR-LAHPFSLAVFEDKVFWTDIINEAIFSANR  236 (266)
T ss_dssp             ---TEEEEEETTSCSCEEEEECTTT-TSSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             ---CEEEEEECCCCCEEEEEeCCCc-ccccEEEEEECCEEEEEECCCCeEEEEEC
Confidence               4588889888654443322222 22345566678999999999999999874

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.52  E-value=3.9e-13  Score=118.89  Aligned_cols=182  Identities=14%  Similarity=0.227  Sum_probs=129.8

Q ss_pred             CcCCCcceEEcC-CCcEEEEe--cCCeEEEEe-CCeEEEEEe--cCCCceeceEEcCCCcEEEEeCC-CceEEEcCCC--
Q 017520           77 SVNHPEDASMDK-NGVIYTAT--RDGWIKRLQ-DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNA-NGLHKVSEDG--  147 (370)
Q Consensus        77 ~~~~P~~i~~d~-~G~l~v~~--~~g~I~~~~-~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~~~g--  147 (370)
                      ....|..++++. .+..++..  .++.|.+++ +|+......  ....|. +++++++|++|+++.. ..+..++++|  
T Consensus        68 ~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~p~-~~avd~~G~i~v~~~~~~~~~~~~~~g~~  146 (279)
T d1q7fa_          68 QLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPR-GVTVDNKGRIIVVECKVMRVIIFDQNGNV  146 (279)
T ss_dssp             CBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSCEE-EEEECTTSCEEEEETTTTEEEEECTTSCE
T ss_pred             cccccccccccccccccceeccCCccccccccccccceeecCCCcccccc-eeccccCCcEEEEeeccceeeEeccCCce
Confidence            345788888765 45555544  567888888 777544332  235688 9999999999999876 4588888877  


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec--CCCCccceE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD--GFYFANGVA  225 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~--~~~~p~gi~  225 (370)
                      +..+..   ...+..+..++++++|++|+++.                 ..+.|++||+++.....+..  .+..|.||+
T Consensus       147 ~~~~g~---~~~~~~~~~i~~d~~g~i~v~d~-----------------~~~~V~~~d~~G~~~~~~g~~g~~~~P~gia  206 (279)
T d1q7fa_         147 LHKFGC---SKHLEFPNGVVVNDKQEIFISDN-----------------RAHCVKVFNYEGQYLRQIGGEGITNYPIGVG  206 (279)
T ss_dssp             EEEEEC---TTTCSSEEEEEECSSSEEEEEEG-----------------GGTEEEEEETTCCEEEEESCTTTSCSEEEEE
T ss_pred             eecccc---cccccccceeeeccceeEEeeec-----------------cccceeeeecCCceeeeecccccccCCcccc
Confidence            343322   22356788999999999999986                 34789999998665555432  467899999


Q ss_pred             EccCCCEEEEEeCCc---EEEEEeCCCCCCceeeec-cCCCCCCCceeECCCCCEEEEEecC
Q 017520          226 LSRDEDYVVVCESWK---CRKYWLKGERKGKLETFA-ENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~---l~~~~~~~~~~~~~~~~~-~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ++++|+ +||++..+   |.+|+.+|.-   ...+. ......|.++++++||+|||+....
T Consensus       207 vD~~G~-i~Vad~~~~~~v~~f~~~G~~---~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~  264 (279)
T d1q7fa_         207 INSNGE-ILIADNHNNFNLTIFTQDGQL---ISALESKVKHAQCFDVALMDDGSVVLASKDY  264 (279)
T ss_dssp             ECTTCC-EEEEECSSSCEEEEECTTSCE---EEEEEESSCCSCEEEEEEETTTEEEEEETTT
T ss_pred             cccCCe-EEEEECCCCcEEEEECCCCCE---EEEEeCCCCCCCEeEEEEeCCCcEEEEeCCC
Confidence            999998 99998643   8888865531   12222 1223468999999999999987543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.1e-12  Score=111.42  Aligned_cols=181  Identities=13%  Similarity=0.085  Sum_probs=130.4

Q ss_pred             cCCCcceEEcC-CCcEEEEe-cCCeEEEEe-CCe-----EEEE-EecCCCceeceEEcC-CCcEEEEeCCC-ceEEEcCC
Q 017520           78 VNHPEDASMDK-NGVIYTAT-RDGWIKRLQ-DGT-----WVNW-KFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSED  146 (370)
Q Consensus        78 ~~~P~~i~~d~-~G~l~v~~-~~g~I~~~~-~g~-----~~~~-~~~~~~p~~gl~~d~-~G~L~v~~~~~-gi~~~~~~  146 (370)
                      +..|.+|.+|. ++.||+++ ..+.|++.+ ++.     .+.. ......|. ||++|. .++||+++... .|..++.+
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I~v~~~~  107 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTVSVADTK  107 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEEEeEecC
Confidence            56788888985 67899998 677899887 431     2222 33345788 999995 56899998774 57777766


Q ss_pred             C--eEEEEeecCCcccccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCcc
Q 017520          147 G--VENFLSYVNGSKLRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFAN  222 (370)
Q Consensus       147 g--~~~~~~~~~g~~~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~  222 (370)
                      |  ...+...  +  ...|.+|++|+ .|.+|+++.+                ..++|+|.+.++...+.+. .++..|+
T Consensus       108 g~~~~~~~~~--~--~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~~~~~p~  167 (266)
T d1ijqa1         108 GVKRKTLFRE--N--GSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWPN  167 (266)
T ss_dssp             SSSEEEEEEC--T--TCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECSSCSCEE
T ss_pred             CceEEEEEcC--C--CCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceecccccccceee
Confidence            6  3333322  1  35688999997 6899999864                3468999999876666554 5678999


Q ss_pred             ceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccC--CCCCCCceeECCCCCEEEEEecC
Q 017520          223 GVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAEN--LPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~--~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      |+++++.++.|||++...  |.+++++|..   .+.+...  ....|.+++++ +++||++....
T Consensus       168 gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~---~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~  228 (266)
T d1ijqa1         168 GITLDLLSGRLYWVDSKLHSISSIDVNGGN---RKTILEDEKRLAHPFSLAVF-EDKVFWTDIIN  228 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEEECTTTTSSEEEEEEE-TTEEEEEETTT
T ss_pred             EEEeeccccEEEEecCCcCEEEEEECCCCC---EEEEEeCCCcccccEEEEEE-CCEEEEEECCC
Confidence            999999988999999876  9999998752   2232222  12357789998 47899998664

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.4e-11  Score=106.13  Aligned_cols=214  Identities=12%  Similarity=0.135  Sum_probs=150.1

Q ss_pred             EEEEecCCeEEEEe-CCeE-------EEEEecCCCceeceEEcC-CCcEEEEeCCC-ceEEEcCCC--eEEEEeecCCcc
Q 017520           92 IYTATRDGWIKRLQ-DGTW-------VNWKFIDSQTLVGLTSTK-EGHLIICDNAN-GLHKVSEDG--VENFLSYVNGSK  159 (370)
Q Consensus        92 l~v~~~~g~I~~~~-~g~~-------~~~~~~~~~p~~gl~~d~-~G~L~v~~~~~-gi~~~~~~g--~~~~~~~~~g~~  159 (370)
                      |+++. .+.|.++. ++..       .........+. +|++|. ++.||+++... .|++++.+|  .+.+...  +  
T Consensus         4 Ll~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~-~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~--~--   77 (263)
T d1npea_           4 LLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVII-GLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ--D--   77 (263)
T ss_dssp             EEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEE-EEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT--T--
T ss_pred             EEEeC-CCeEEEEECCCccccccccccccccCCCcEE-EEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEe--c--
Confidence            55555 35798888 5421       12223333466 899995 45799998774 588888555  4444322  1  


Q ss_pred             cccccceEEcC-CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCCCEEEEEe
Q 017520          160 LRFANDVVEAS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       160 ~~~~~~l~~d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      ...|.+|++|. .++||+++.                 ..+.|.++++++...+.+. .++..|.+++++|.+..+||++
T Consensus        78 ~~~p~~iAvD~~~~~lY~~d~-----------------~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~  140 (263)
T d1npea_          78 LGSPEGIALDHLGRTIFWTDS-----------------QLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTD  140 (263)
T ss_dssp             CCCEEEEEEETTTTEEEEEET-----------------TTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred             cccccEEEEeccCCeEEEecc-----------------CCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEee
Confidence            34688999996 678999986                 3468999998876665554 5578899999999988999998


Q ss_pred             CCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCC-CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccc
Q 017520          238 SWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDG-TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFI  312 (370)
Q Consensus       238 ~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G-~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (370)
                      .+.    |++.+++|..   .+.+....-..|.+|++|..+ +||++....                             
T Consensus       141 ~~~~~~~I~r~~~dG~~---~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~-----------------------------  188 (263)
T d1npea_         141 WNRDNPKIETSHMDGTN---RRILAQDNLGLPNGLTFDAFSSQLCWVDAGT-----------------------------  188 (263)
T ss_dssp             CCSSSCEEEEEETTSCC---CEEEECTTCSCEEEEEEETTTTEEEEEETTT-----------------------------
T ss_pred             cCCCCcEEEEecCCCCC---ceeeeeecccccceEEEeecCcEEEEEeCCC-----------------------------
Confidence            764    9999988752   233332223468999999665 588887543                             


Q ss_pred             cCCCceEEEEECCCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeC
Q 017520          313 TLGGGAHLIHVAEDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       313 ~~~~~g~v~~~~~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~  369 (370)
                           +.|.+++.+|...+..-.  +.  .....+...+++||..+...+.|.++++
T Consensus       189 -----~~I~~~~~~g~~~~~v~~--~~--~~P~~lav~~~~lYwtd~~~~~I~~~~~  236 (263)
T d1npea_         189 -----HRAECLNPAQPGRRKVLE--GL--QYPFAVTSYGKNLYYTDWKTNSVIAMDL  236 (263)
T ss_dssp             -----TEEEEEETTEEEEEEEEE--CC--CSEEEEEEETTEEEEEETTTTEEEEEET
T ss_pred             -----CEEEEEECCCCCeEEEEC--CC--CCcEEEEEECCEEEEEECCCCEEEEEEC
Confidence                 458889998876665433  22  1234566678999999999999999875

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.34  E-value=4.4e-11  Score=106.53  Aligned_cols=156  Identities=15%  Similarity=0.139  Sum_probs=111.8

Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      .++.++++++||+||+++.                 ..++|++++++ ++.+.+......|+++++++||+ +|+++...
T Consensus        28 ~~~e~iAv~pdG~l~vt~~-----------------~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~-l~v~~~~~   88 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNH-----------------EVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGD-LVATGWNA   88 (302)
T ss_dssp             CCEEEEEECTTSCEEEEET-----------------TTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSC-EEEEEECT
T ss_pred             CCcCCEEECCCCCEEEEeC-----------------CCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCC-eEEEecCC
Confidence            3678899999999999986                 35799999998 45666666667899999999999 88887655


Q ss_pred             --EEEEEeCCCCCCceeeeccC-CCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCc
Q 017520          241 --CRKYWLKGERKGKLETFAEN-LPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGG  317 (370)
Q Consensus       241 --l~~~~~~~~~~~~~~~~~~~-~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (370)
                        +.+++..+.. +....+... ....+++++++++|++|++....                                  
T Consensus        89 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~----------------------------------  133 (302)
T d2p4oa1          89 DSIPVVSLVKSD-GTVETLLTLPDAIFLNGITPLSDTQYLTADSYR----------------------------------  133 (302)
T ss_dssp             TSCEEEEEECTT-SCEEEEEECTTCSCEEEEEESSSSEEEEEETTT----------------------------------
T ss_pred             ceEEEEEecccc-cceeeccccCCccccceeEEccCCCEEeecccc----------------------------------
Confidence              8888776532 233333222 22468889999999999997654                                  


Q ss_pred             eEEEEECCCCcEEEEEe-CCCCC------ccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          318 AHLIHVAEDGTIIRNLV-DPTGQ------LMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       318 g~v~~~~~~g~~~~~~~-~~~g~------~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                      +.+.++++++.....+. ++...      .......+...++.||++......|.+++.+
T Consensus       134 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~~~~~i~~~~~~  193 (302)
T d2p4oa1         134 GAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLLLRIPVD  193 (302)
T ss_dssp             TEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEETTTTEEEEEEBC
T ss_pred             ccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecCCCCeEEecccc
Confidence            45788887766555432 21111      1112234556778999999999999998753

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.30  E-value=8.2e-09  Score=89.83  Aligned_cols=227  Identities=13%  Similarity=0.134  Sum_probs=150.6

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCc-eEEEc-CCC-eEE
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG-VEN  150 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~g-i~~~~-~~g-~~~  150 (370)
                      .+|.++++++||+ ||++. .++.|..++  +++..........|. +++++++|. ++++....+ +..++ .++ ...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecccccceeee
Confidence            4799999999986 78776 678999999  666554445556788 999999997 566655544 44445 445 222


Q ss_pred             EEeecCCcccccccceEEcCCCcEE-EEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~l~-v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      ....     ...+..++++++|+.+ ++..                 ....+..++..+............|..++++++
T Consensus       111 ~~~~-----~~~~~~~~~~~dg~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2         111 TVKT-----GKSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             EEEC-----SSSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             eccc-----cccceEEEeecCCCeeeeeec-----------------cccceeeeeccccceeeecccCCCceEEEeecc
Confidence            2221     1356778999999644 4433                 345678888887776666666677899999999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCc
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPK  306 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (370)
                      ++.+|++....  +..++....   ...... .....|.+++++.+|+ +|++.....                      
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~----------------------  222 (301)
T d1l0qa2         169 GTKVYVANFDSMSISVIDTVTN---SVIDTV-KVEAAPSGIAVNPEGTKAYVTNVDKY----------------------  222 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTT---EEEEEE-ECSSEEEEEEECTTSSEEEEEEECSS----------------------
T ss_pred             ccceeeecccccccccccccce---eeeecc-cccCCcceeeccccccccccccccce----------------------
Confidence            99999998876  444443322   111111 2334578899999996 566654431                      


Q ss_pred             cccccccCCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEE-C-CEEEEEeCCCCeEEEEeC
Q 017520          307 LFSQFITLGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       307 ~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~-~-g~L~~gs~~~~~i~~~~~  369 (370)
                                .+.+..+|. .++.+..+....     .+..+... + .+||+++-..+.|.++++
T Consensus       223 ----------~~~v~v~D~~t~~~~~~~~~~~-----~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         223 ----------FNTVSMIDTGTNKITARIPVGP-----DPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             ----------CCEEEEEETTTTEEEEEEECCS-----SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ----------eeeeeeeecCCCeEEEEEcCCC-----CEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence                      245777785 577777776522     24455543 4 468998888888888875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.26  E-value=9.4e-11  Score=104.15  Aligned_cols=140  Identities=19%  Similarity=0.204  Sum_probs=105.7

Q ss_pred             CCCcceEEcCCCcEEEEec-------CCeEEEEeCCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CC-
Q 017520           79 NHPEDASMDKNGVIYTATR-------DGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--ED-  146 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~-------~g~I~~~~~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~-  146 (370)
                      ..|.++.+|++|++|+++.       .|.++++.+|+..........|+ |++++++++ +|+++.. +.|++++  .+ 
T Consensus       103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~N-g~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             ccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcc-eeeecCCCceEEEeecccceeeEeeecccc
Confidence            3578899999999999972       45678888888777777777899 999999885 8999876 5688776  22 


Q ss_pred             C-----eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCc
Q 017520          147 G-----VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFA  221 (370)
Q Consensus       147 g-----~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p  221 (370)
                      +     ...+... .+ ....|.++++|++|+||++..                 ..++|.+||++++....+.-....|
T Consensus       182 ~~~~~~~~~~~~~-~~-~~g~pdG~~vD~~GnlWva~~-----------------~~g~V~~~dp~G~~~~~i~lP~~~~  242 (295)
T d2ghsa1         182 GLPTGKAEVFIDS-TG-IKGGMDGSVCDAEGHIWNARW-----------------GEGAVDRYDTDGNHIARYEVPGKQT  242 (295)
T ss_dssp             CCBSSCCEEEEEC-TT-SSSEEEEEEECTTSCEEEEEE-----------------TTTEEEEECTTCCEEEEEECSCSBE
T ss_pred             cccccceEEEecc-Cc-ccccccceEEcCCCCEEeeee-----------------CCCceEEecCCCcEeeEecCCCCce
Confidence            2     2222221 22 224789999999999999965                 3478999999877766665555678


Q ss_pred             cceEEc-cCCCEEEEEeC
Q 017520          222 NGVALS-RDEDYVVVCES  238 (370)
Q Consensus       222 ~gi~~~-~dg~~l~v~~~  238 (370)
                      ..++|. +|.+.|||+..
T Consensus       243 T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         243 TCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             EEEEEESTTSCEEEEEEB
T ss_pred             EEEEEeCCCCCEEEEEEC
Confidence            889996 68889999864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.14  E-value=3.4e-08  Score=85.74  Aligned_cols=164  Identities=18%  Similarity=0.229  Sum_probs=114.2

Q ss_pred             cEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eEEEEeecCCccccc
Q 017520           91 VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKLRF  162 (370)
Q Consensus        91 ~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~~~  162 (370)
                      ++||+. .++.|..+|  ++++..-......|. ++++++||+ ||++... +.|..++ .++  +..+..      ...
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~-~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~------~~~   75 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPM-GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA------GSS   75 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC------SSS
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCce-EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec------ccc
Confidence            578876 778899999  777665556667899 999999997 7888755 4688888 566  333211      135


Q ss_pred             ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-
Q 017520          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-  240 (370)
Q Consensus       163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-  240 (370)
                      +..++++++|. ++++..                 ....+..++..+++..........+..+++++|++.++++.... 
T Consensus        76 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~  138 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNM-----------------ASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK  138 (301)
T ss_dssp             EEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT
T ss_pred             cccccccccccccccccc-----------------ccceeeecccccceeeeeccccccceEEEeecCCCeeeeeecccc
Confidence            78899999986 555543                 34578888888887666666667788999999999888887755 


Q ss_pred             -EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          241 -CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       241 -l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                       +..++....+  ....+  .....|..++.+++++ +|++...
T Consensus       139 ~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  178 (301)
T d1l0qa2         139 TVSVINTVTKA--VINTV--SVGRSPKGIAVTPDGTKVYVANFD  178 (301)
T ss_dssp             EEEEEETTTTE--EEEEE--ECCSSEEEEEECTTSSEEEEEETT
T ss_pred             ceeeeeccccc--eeeec--ccCCCceEEEeeccccceeeeccc
Confidence             6667654331  11122  1223467788888886 6666544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=4.8e-08  Score=88.86  Aligned_cols=242  Identities=13%  Similarity=0.073  Sum_probs=139.4

Q ss_pred             CCCcceEEcCCCc-EEEEecCCeEEEEe---CCeEEEE--EecCCCceeceEEcCCCc-EEEEeCC--C-ceEEEc--CC
Q 017520           79 NHPEDASMDKNGV-IYTATRDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA--N-GLHKVS--ED  146 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~~~g~I~~~~---~g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~--~-gi~~~~--~~  146 (370)
                      ..|..|+++++|+ ||+++. +.+..+.   ++.....  ....+.|. .++++++|+ +|+....  . .+..+.  .+
T Consensus        40 ~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~-~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~  117 (365)
T d1jofa_          40 EPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcE-EEEECCCCCEEEEEEecCCCCEEEEeEccCC
Confidence            3567899998875 677664 5566665   5544332  23456788 899999985 6776543  1 233322  22


Q ss_pred             C--eEEEE-----------eecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCC-CCeE
Q 017520          147 G--VENFL-----------SYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPS-SNIT  211 (370)
Q Consensus       147 g--~~~~~-----------~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~-t~~~  211 (370)
                      +  ...+.           ....-....++++++++|||+ +|+++..                 ...|++|+.+ ++..
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g-----------------~d~v~~~~~~~~g~~  180 (365)
T d1jofa_         118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGEV  180 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSCE
T ss_pred             CCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC-----------------CCEEEEEEccCCCce
Confidence            2  11111           000001123678999999996 8888753                 3566666432 2333


Q ss_pred             EEE-----ecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeee-----cc-CCC----------CCCCce
Q 017520          212 TLV-----ADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETF-----AE-NLP----------GAPDNI  268 (370)
Q Consensus       212 ~~~-----~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~-----~~-~~~----------g~p~~i  268 (370)
                      ...     ......|.++++++|++.+|++....  |.+|+.++.+.......     .. ..+          ..+..+
T Consensus       181 ~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  260 (365)
T d1jofa_         181 ELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVC  260 (365)
T ss_dssp             EEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEE
T ss_pred             eeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccce
Confidence            222     12245788999999999999998766  88898876532211110     00 000          123458


Q ss_pred             eECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEE---eCC-CCCcccc
Q 017520          269 NLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNL---VDP-TGQLMSF  343 (370)
Q Consensus       269 ~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~---~~~-~g~~~~~  343 (370)
                      ++++||+ +|++.......                           ....-..++++.+|.+....   ... .|.   .
T Consensus       261 ~~spdG~~lyvsnr~~~~~---------------------------~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~---~  310 (365)
T d1jofa_         261 ALTFSGKYMFASSRANKFE---------------------------LQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---H  310 (365)
T ss_dssp             EECTTSSEEEEEEEESSTT---------------------------SCCEEEEEEECTTSCEEEEEEEEECSSCCT---T
T ss_pred             EECCCCCEEEEEcccCCCc---------------------------cceEEEEEEecCCCceeeEeEeeEEEcCCC---C
Confidence            8999996 67775543110                           11112356667777665432   222 232   2


Q ss_pred             ceeEEE---ECCEEEEEeCCCCeEEEEeC
Q 017520          344 VTSGLQ---VDNHLYVISLTSNFIGKVQL  369 (370)
Q Consensus       344 ~t~~~~---~~g~L~~gs~~~~~i~~~~~  369 (370)
                      ...+..   .+..||+++..++.|.++++
T Consensus       311 p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         311 SNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             ccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            223333   34679999999999998874

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=1e-07  Score=83.96  Aligned_cols=236  Identities=14%  Similarity=0.175  Sum_probs=132.8

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe---C-CeEEEE--EecCCCceeceEEcCCCc-EEEEeCCCc-eEEEc-CCC
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ---D-GTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~---~-g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~~g-i~~~~-~~g  147 (370)
                      ..|.+|++++||+ ||++. .++.|..|+   + +..+..  ......|. ++++++||+ ||+++...+ +..+. .+.
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccc
Confidence            4689999999995 78887 478888877   2 233322  23455788 999999996 788876544 44444 333


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE-------EecCC
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL-------VADGF  218 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~-------~~~~~  218 (370)
                       ..........  ...++++.++++|+ +++++.                 ....+..++..+.....       .....
T Consensus       116 ~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_         116 LPVGVVDVVEG--LDGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEEEEEECC--CTTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             cceecccccCC--CccceEEEeeecceeeecccc-----------------ccceeeEEEeccCCcceeeeceeeeeecC
Confidence             2222221111  23577899999996 555543                 22456555543321111       11234


Q ss_pred             CCccceEEccCCCEEEEEeCCc--EEEEEeCCC--CCCceeeecc---C--CCCCCCceeECCCCC-EEEEEecCchhHH
Q 017520          219 YFANGVALSRDEDYVVVCESWK--CRKYWLKGE--RKGKLETFAE---N--LPGAPDNINLAPDGT-FWIAIIKLDARRM  288 (370)
Q Consensus       219 ~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~--~~~~~~~~~~---~--~~g~p~~i~~d~~G~-lwv~~~~~~~~~~  288 (370)
                      ..|..+++++++..+|++....  ...++....  ..........   .  ....+..++++++|+ +|++....     
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~-----  251 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTA-----  251 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTT-----
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccC-----
Confidence            5678899999999888887655  445544322  1111111110   0  112345577889997 44444322     


Q ss_pred             HhhhcchhHHHHHHhCCccccccccCCCceEEEEECCCCcEEEEEe-CCCCCccccceeEEEE-C-CEEEEEeCCCCeEE
Q 017520          289 KILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAEDGTIIRNLV-DPTGQLMSFVTSGLQV-D-NHLYVISLTSNFIG  365 (370)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~-~~~g~~~~~~t~~~~~-~-g~L~~gs~~~~~i~  365 (370)
                                                 ....++.++.+++...... .+.+.   .+..+... + ..||+++..++.|.
T Consensus       252 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~a~spDGk~l~va~~~~~~v~  301 (333)
T d1ri6a_         252 ---------------------------SLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIAAGQKSHHIS  301 (333)
T ss_dssp             ---------------------------TEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEEECTTTCEEE
T ss_pred             ---------------------------CeEEEEEEcCCCCEEEEEEEeCCCC---CeeEEEEeCCCCEEEEEECCCCeEE
Confidence                                       1234566666665544322 11221   23333333 3 56888888888888


Q ss_pred             EEeC
Q 017520          366 KVQL  369 (370)
Q Consensus       366 ~~~~  369 (370)
                      ++++
T Consensus       302 v~~i  305 (333)
T d1ri6a_         302 VYEI  305 (333)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7754

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=98.96  E-value=3e-07  Score=80.90  Aligned_cols=170  Identities=9%  Similarity=0.071  Sum_probs=106.8

Q ss_pred             cEEEEe-cCCeEEEEe---CCeEEEE--EecCCCceeceEEcCCCc-EEEEeCC-CceEEEc--CCC--eEEEEeecCCc
Q 017520           91 VIYTAT-RDGWIKRLQ---DGTWVNW--KFIDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS--EDG--VENFLSYVNGS  158 (370)
Q Consensus        91 ~l~v~~-~~g~I~~~~---~g~~~~~--~~~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~--~~g--~~~~~~~~~g~  158 (370)
                      .+||++ .++.|+.|+   ++..+..  ....+.+. +|+++|||+ ||++... +.|..++  .++  .+.......  
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~--   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL--   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC--
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc--
Confidence            588888 778888888   4444333  35667888 999999996 8888764 4455544  333  333222211  


Q ss_pred             ccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE---EecCCCCccceEEccCCCEEE
Q 017520          159 KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL---VADGFYFANGVALSRDEDYVV  234 (370)
Q Consensus       159 ~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~---~~~~~~~p~gi~~~~dg~~l~  234 (370)
                       ...+..+++++||+ ||+++.                 ..+.+..++.+......   .......+.++.+++|++.++
T Consensus        82 -~~~p~~l~~spDg~~l~v~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~  143 (333)
T d1ri6a_          82 -PGSLTHISTDHQGQFVFVGSY-----------------NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLW  143 (333)
T ss_dssp             -SSCCSEEEECTTSSEEEEEET-----------------TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEE
T ss_pred             -CCCceEEEEcCCCCEEeeccc-----------------CCCceeeeccccccceecccccCCCccceEEEeeecceeee
Confidence             13678899999996 777753                 23455555544333322   233455688999999999999


Q ss_pred             EEeCCc--EEEEEeCCCCCCcee---eeccCCCCCCCceeECCCCCEEEEEe
Q 017520          235 VCESWK--CRKYWLKGERKGKLE---TFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       235 v~~~~~--l~~~~~~~~~~~~~~---~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      ++....  +..|+..........   .........|..++++.++.......
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~  195 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  195 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeec
Confidence            988766  888887543211111   11112223577899999887655443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.89  E-value=8e-07  Score=77.87  Aligned_cols=149  Identities=11%  Similarity=-0.032  Sum_probs=97.5

Q ss_pred             cEEEEecCCeEEEEe--CCeEEEEEe---cCCCceeceEEcCCCc-EEEEeCC-CceEEEc-CCC--eEEEEeecCCccc
Q 017520           91 VIYTATRDGWIKRLQ--DGTWVNWKF---IDSQTLVGLTSTKEGH-LIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL  160 (370)
Q Consensus        91 ~l~v~~~~g~I~~~~--~g~~~~~~~---~~~~p~~gl~~d~~G~-L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~  160 (370)
                      ++++++.+++|..||  +++......   ....|. ++++++||+ ||++... +.|..++ .+|  +..+.........
T Consensus         3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            467777889999999  666544332   245688 999999997 6787654 4588888 677  3333222222233


Q ss_pred             ccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC
Q 017520          161 RFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       161 ~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      ..+.+++++++|+ +|++......      ...........+..+|..+++..........+.++++++||+.+|++...
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  155 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRD  155 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSS
T ss_pred             cceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCC
Confidence            5678899999985 6666432100      01111224467888999888776665566778999999999988887532


Q ss_pred             cEEEEEeC
Q 017520          240 KCRKYWLK  247 (370)
Q Consensus       240 ~l~~~~~~  247 (370)
                       +..++..
T Consensus       156 -~~~~d~~  162 (337)
T d1pbyb_         156 -LHVMDPE  162 (337)
T ss_dssp             -EEEEETT
T ss_pred             -cceeeee
Confidence             5555543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.89  E-value=3e-08  Score=92.84  Aligned_cols=168  Identities=15%  Similarity=0.208  Sum_probs=107.5

Q ss_pred             CceEecCCCcCCCcceEEcCCCcEEEEec-CCeEEEEe--CCeEEEEEecC---------CCceeceEEcCC----CcEE
Q 017520           69 DFIKVGEGSVNHPEDASMDKNGVIYTATR-DGWIKRLQ--DGTWVNWKFID---------SQTLVGLTSTKE----GHLI  132 (370)
Q Consensus        69 ~~~~~~~~~~~~P~~i~~d~~G~l~v~~~-~g~I~~~~--~g~~~~~~~~~---------~~p~~gl~~d~~----G~L~  132 (370)
                      +++++.++ +..|.+|++.+||+|||+.. .|+|++++  +++.+.+....         +.-+ +|+++++    +.+|
T Consensus        18 ~~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iY   95 (450)
T d1crua_          18 DKKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIY   95 (450)
T ss_dssp             CEEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEE
T ss_pred             EEEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEE
Confidence            45667776 89999999999999999995 69999998  55555443211         1224 8999864    7789


Q ss_pred             EEeCC----------C---ceEEEc--CCC--e---EEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCcc--ce-
Q 017520          133 ICDNA----------N---GLHKVS--EDG--V---ENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHE--YC-  189 (370)
Q Consensus       133 v~~~~----------~---gi~~~~--~~g--~---~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~--~~-  189 (370)
                      ++-..          .   -+.++.  .+.  .   +.+....+....+.-..|++++||+|||+..........  .. 
T Consensus        96 vsyt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~  175 (450)
T d1crua_          96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLP  175 (450)
T ss_dssp             EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSC
T ss_pred             EEEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCcccccccccc
Confidence            86320          0   133333  222  1   222233333334566789999999999996542111000  00 


Q ss_pred             ---------ec---ccccCCCceEEEEeCCCCe-----------EEEEecCCCCccceEEccCCCEEEEEeCC
Q 017520          190 ---------LD---ILEGKPHGQLLKYDPSSNI-----------TTLVADGFYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       190 ---------~~---~~~~~~~g~l~~~d~~t~~-----------~~~~~~~~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                               ..   -......|.|+|++++...           .++++.++++|.+++++++|+ ||+++.+
T Consensus       176 ~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         176 NQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             CCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             cccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence                     00   0011235899999986432           256788999999999999887 9999865

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.89  E-value=4.7e-07  Score=84.04  Aligned_cols=172  Identities=8%  Similarity=-0.090  Sum_probs=108.4

Q ss_pred             cEE-EEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEEEeecCC-ccccc
Q 017520           91 VIY-TAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENFLSYVNG-SKLRF  162 (370)
Q Consensus        91 ~l~-v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~~~~~~g-~~~~~  162 (370)
                      +++ +.. .+|.|..+|  ++++..-......|+ +++++|||+ +|+++.++.+..++ .++ .+.......+ .+...
T Consensus        32 ~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~  110 (432)
T d1qksa2          32 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI  110 (432)
T ss_dssp             GEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE
T ss_pred             cEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe
Confidence            344 443 778999999  677655555566799 999999996 77777656677787 555 3222221111 12223


Q ss_pred             ccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC------------CCCccceEEccC
Q 017520          163 ANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------FYFANGVALSRD  229 (370)
Q Consensus       163 ~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~------------~~~p~gi~~~~d  229 (370)
                      +...++++||+ +|++..                 ..+.+..+|.++++.......            .....++++++|
T Consensus       111 ~~s~~~SpDG~~l~vs~~-----------------~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d  173 (432)
T d1qksa2         111 ETSKMEGWEDKYAIAGAY-----------------WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY  173 (432)
T ss_dssp             EECCSTTCTTTEEEEEEE-----------------ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             EEecccCCCCCEEEEEcC-----------------CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCC
Confidence            33445567996 677754                 346788999888776543221            112346788999


Q ss_pred             CCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEec
Q 017520          230 EDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIK  282 (370)
Q Consensus       230 g~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~  282 (370)
                      |..++++....  |..++....+......+  .....|.+++++++|+ ++++...
T Consensus       174 g~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~  227 (432)
T d1qksa2         174 RPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANA  227 (432)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGG
T ss_pred             CCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccc
Confidence            99888887654  88888765432222222  2234588999999998 5555544

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=1.9e-06  Score=75.87  Aligned_cols=231  Identities=14%  Similarity=0.071  Sum_probs=141.7

Q ss_pred             CCCcceEEcCCCcEE-EEecCCeEEEEe--CCe--EE-EEEecCCCceeceEEcCCCcEEEEeCC--Cc-eEEEc-CCC-
Q 017520           79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGT--WV-NWKFIDSQTLVGLTSTKEGHLIICDNA--NG-LHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~--~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~--~g-i~~~~-~~g-  147 (370)
                      ....++++.++|++. +|+.+|.|..|+  +++  .+ .+....+... +++++++|.++++...  .. +..++ +++ 
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~  137 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTGT  137 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTCC
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-ccccccccccccccccccccccccccccccc
Confidence            456778899988655 566899999998  332  22 2333344566 8999999986665432  22 33334 444 


Q ss_pred             -eEEEEeecCCcccccccceEEcCCCcE-EEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccce
Q 017520          148 -VENFLSYVNGSKLRFANDVVEASDGSL-YFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGV  224 (370)
Q Consensus       148 -~~~~~~~~~g~~~~~~~~l~~d~~G~l-~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi  224 (370)
                       ...+    .+. ...++.++++++|.. .++.+                 .++.|..||.++++....... ......+
T Consensus       138 ~~~~l----~~h-~~~v~~v~~~~~~~~~l~sgs-----------------~d~~i~i~d~~~~~~~~~~~~~~~~i~~v  195 (311)
T d1nr0a1         138 SNGNL----TGQ-ARAMNSVDFKPSRPFRIISGS-----------------DDNTVAIFEGPPFKFKSTFGEHTKFVHSV  195 (311)
T ss_dssp             BCBCC----CCC-SSCEEEEEECSSSSCEEEEEE-----------------TTSCEEEEETTTBEEEEEECCCSSCEEEE
T ss_pred             ccccc----ccc-ccccccccccccceeeecccc-----------------ccccccccccccccccccccccccccccc
Confidence             2221    111 135778999999864 44432                 346788999887766554444 3345789


Q ss_pred             EEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc---CC---CCCCCceeECCCCCEEEEEecCchhHHHhhhcchhH
Q 017520          225 ALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE---NL---PGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLI  297 (370)
Q Consensus       225 ~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~---~~---~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~  297 (370)
                      +++++++.++.+...+ |..|+.....  ....+..   ..   .+....++++++|++.++....              
T Consensus       196 ~~~p~~~~l~~~~~d~~v~~~d~~~~~--~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~D--------------  259 (311)
T d1nr0a1         196 RYNPDGSLFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASAD--------------  259 (311)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETT--------------
T ss_pred             ccCcccccccccccccccccccccccc--ccccccccccccccccccccccccCCCCCEEEEEeCC--------------
Confidence            9999999877777767 8888875431  1111110   01   1123457889999866654332              


Q ss_pred             HHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEECCEEEEEeCCCCeEEEEeCC
Q 017520          298 KHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVISLTSNFIGKVQLS  370 (370)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs~~~~~i~~~~~~  370 (370)
                                          +.|..+| .+++.++.+...... ......+...+..|+.++.+ ..|...++|
T Consensus       260 --------------------g~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~d-G~i~~wd~d  311 (311)
T d1nr0a1         260 --------------------KTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISAN-GFINFVNPE  311 (311)
T ss_dssp             --------------------SEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETT-CCEEEEETT
T ss_pred             --------------------CeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECC-CEEEEEeCC
Confidence                                3466777 568888888664432 22334555556778888854 567776664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.84  E-value=1.1e-06  Score=79.58  Aligned_cols=185  Identities=16%  Similarity=0.103  Sum_probs=108.1

Q ss_pred             CCCcceEEcCCCc-EEEEe---cCCeEEEEe---CC-eEEEE-----------E-----ecCCCceeceEEcCCCc-EEE
Q 017520           79 NHPEDASMDKNGV-IYTAT---RDGWIKRLQ---DG-TWVNW-----------K-----FIDSQTLVGLTSTKEGH-LII  133 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~---~~g~I~~~~---~g-~~~~~-----------~-----~~~~~p~~gl~~d~~G~-L~v  133 (370)
                      .+|..++++++|. +|+..   ..+.|..+.   ++ ....+           .     .....++ +++++|||+ ||+
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEE
Confidence            3799999998884 56655   345566544   22 11111           0     1223578 999999997 899


Q ss_pred             EeCC-CceEEEc--CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCC
Q 017520          134 CDNA-NGLHKVS--EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSS  208 (370)
Q Consensus       134 ~~~~-~gi~~~~--~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t  208 (370)
                      ++.+ ..|..++  .+| +..........+...|..++++++|+ +|++..                 ..+.|..|+.++
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e-----------------~~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-----------------AGNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-----------------TTTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc-----------------CCCEEEEEEecC
Confidence            9876 3566655  455 44332221222235788999999996 777754                 345666665443


Q ss_pred             CeEE---EEe-----c------------CCCCccceEEccCCCEEEEEeCCc-------EEEEEeCCCC-CCceeeec--
Q 017520          209 NITT---LVA-----D------------GFYFANGVALSRDEDYVVVCESWK-------CRKYWLKGER-KGKLETFA--  258 (370)
Q Consensus       209 ~~~~---~~~-----~------------~~~~p~gi~~~~dg~~l~v~~~~~-------l~~~~~~~~~-~~~~~~~~--  258 (370)
                      +...   ...     .            ....+..+.++|||+++|+++.+.       |..|++.... ......+.  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            3211   110     0            011245789999999999997532       6666664321 11111111  


Q ss_pred             cCCCCCCCceeECC-CCC-EEEEEe
Q 017520          259 ENLPGAPDNINLAP-DGT-FWIAII  281 (370)
Q Consensus       259 ~~~~g~p~~i~~d~-~G~-lwv~~~  281 (370)
                      ......|.++++++ +|+ +|++..
T Consensus       305 ~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         305 PTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             EcCCCCccEEEecCCCCCEEEEEeC
Confidence            12345799999986 787 666643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.83  E-value=2.7e-07  Score=80.14  Aligned_cols=183  Identities=20%  Similarity=0.261  Sum_probs=114.9

Q ss_pred             ceEecCCCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEEe--cCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520           70 FIKVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (370)
Q Consensus        70 ~~~~~~~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~~--~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~  144 (370)
                      ..++..|.-..-.+|++.++|. |..++.||.|..|+  +++......  ...... ++++.++|.++++..+..+..++
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDLFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCEEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeeccceeecccceeeEEEec
Confidence            3455566655677899999886 55667899999999  565443322  223456 89999999999888777777776


Q ss_pred             CCC--eE---EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCC
Q 017520          145 EDG--VE---NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFY  219 (370)
Q Consensus       145 ~~g--~~---~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~  219 (370)
                      ..+  ..   ......    ...+..+++.++|++.++..                  .+.+..++..  +..... ...
T Consensus        83 ~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~~~~------------------~~~i~~~~~~--~~~~~~-~~~  137 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKL----SSQPLGLAVSADGDIAVAAC------------------YKHIAIYSHG--KLTEVP-ISY  137 (299)
T ss_dssp             SSSSSSCTTSCCEEEC----SSCEEEEEECTTSSCEEEEE------------------SSEEEEEETT--EEEEEE-CSS
T ss_pred             cCCccccccccccccc----cccccccccccccccccccc------------------cccccccccc--cccccc-ccc
Confidence            222  11   111111    13456788999998666643                  2467777753  222222 223


Q ss_pred             CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          220 FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       220 ~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ....++++++++.++++...+ |..|++++.+.......  ........++++++|.+.++.
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~  197 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI--VHPAEITSVAFSNNGAFLVAT  197 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE--ECSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence            456789999999888877777 88999876432222222  122335567888888765554

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.5e-06  Score=72.38  Aligned_cols=222  Identities=9%  Similarity=-0.022  Sum_probs=136.3

Q ss_pred             CcceEEcCCCc-EEEEecCCeEEEEe-C-C--eEE-EEEecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC-eEEE
Q 017520           81 PEDASMDKNGV-IYTATRDGWIKRLQ-D-G--TWV-NWKFIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-VENF  151 (370)
Q Consensus        81 P~~i~~d~~G~-l~v~~~~g~I~~~~-~-g--~~~-~~~~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g-~~~~  151 (370)
                      -.++++.++|+ |.+++.+|.|..|+ . .  +.. .+........ .+++++++.+.++ .....+..++ .++ ....
T Consensus       100 I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~  178 (337)
T d1gxra_         100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQ  178 (337)
T ss_dssp             EEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             EEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            35788988886 55667899999998 3 2  222 2222333455 7889998876665 4345577777 555 3222


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccCCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRDED  231 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~  231 (370)
                      ...    ....+..+++.++|+..+...                 .++.+..+|..+++.............++++++++
T Consensus       179 ~~~----~~~~v~~l~~s~~~~~~~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~  237 (337)
T d1gxra_         179 FQG----HTDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE  237 (337)
T ss_dssp             ECC----CSSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccc----ccccccccccccccccccccc-----------------ccccccccccccceeecccccccceEEEEEccccc
Confidence            111    113567889999987555432                 34788889988776544333334567889999999


Q ss_pred             EEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcchhHHHHHHhCCccccc
Q 017520          232 YVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQ  310 (370)
Q Consensus       232 ~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (370)
                      .++++...+ +..|+++...   ..... ...+....++++++|++.++....                           
T Consensus       238 ~l~~~~~d~~i~i~d~~~~~---~~~~~-~~~~~i~~v~~s~~g~~l~s~s~D---------------------------  286 (337)
T d1gxra_         238 WLAVGMESSNVEVLHVNKPD---KYQLH-LHESCVLSLKFAYCGKWFVSTGKD---------------------------  286 (337)
T ss_dssp             EEEEEETTSCEEEEETTSSC---EEEEC-CCSSCEEEEEECTTSSEEEEEETT---------------------------
T ss_pred             ccceeccccccccccccccc---ccccc-ccccccceEEECCCCCEEEEEeCC---------------------------
Confidence            888777777 8889876542   11211 223345678889999877665432                           


Q ss_pred             cccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CC-EEEEEeCCCCeEEEEe
Q 017520          311 FITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTSNFIGKVQ  368 (370)
Q Consensus       311 ~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~gs~~~~~i~~~~  368 (370)
                             +.|..+| ..++.+..+....     .++.+... ++ .|..|+.+ ..|.+.+
T Consensus       287 -------g~i~iwd~~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~t~s~D-~~I~vWd  334 (337)
T d1gxra_         287 -------NLLNAWRTPYGASIFQSKESS-----SVLSCDISVDDKYIVTGSGD-KKATVYE  334 (337)
T ss_dssp             -------SEEEEEETTTCCEEEEEECSS-----CEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred             -------CeEEEEECCCCCEEEEccCCC-----CEEEEEEeCCCCEEEEEeCC-CeEEEEE
Confidence                   3466677 4677777765422     35555544 34 45555544 3455544

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.73  E-value=3.2e-06  Score=77.73  Aligned_cols=184  Identities=7%  Similarity=-0.031  Sum_probs=109.5

Q ss_pred             CCcceEEcCC--CcEEEEe-cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceEEEc-CCC-eEEE
Q 017520           80 HPEDASMDKN--GVIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLHKVS-EDG-VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~--G~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~~~~-~~g-~~~~  151 (370)
                      .|..+.++.+  +.++|+. .+|.|..||  +++..........|. +++++|||+ ||+++.++.+..++ .++ ....
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence            4555555543  3345655 789999999  677554445556799 999999997 67776655677777 555 3332


Q ss_pred             EeecCC-cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC------------
Q 017520          152 LSYVNG-SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG------------  217 (370)
Q Consensus       152 ~~~~~g-~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~------------  217 (370)
                      .....+ .+.+.+.++++.|||+ ++++..                 ..+.+..+|.+++........            
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~-----------------~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~  161 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAY-----------------WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP  161 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEE-----------------ESSEEEEEETTTCCEEEEEECCEECSSSCCEES
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeec-----------------CCCeEEEEcCCccceeEEeeccCCCccceeecC
Confidence            221111 1122333445567896 667653                 235677888877765443221            


Q ss_pred             CCCccceEEccCCCEEEEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          218 FYFANGVALSRDEDYVVVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                      ......++.++|+..++++....  +..++............  .....|.++.++++|+++......
T Consensus       162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~a~~~  227 (426)
T d1hzua2         162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI--GAAPFLADGGWDSSHRYFMTAANN  227 (426)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEE--ECCSSEEEEEECTTSCEEEEEETT
T ss_pred             CCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEe--ccCCccEeeeECCCCcEEEeeeec
Confidence            11223467788888888877665  55555443322112221  223357789999999877666543

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.72  E-value=6.6e-06  Score=72.29  Aligned_cols=179  Identities=8%  Similarity=-0.025  Sum_probs=105.5

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--e-EEE
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--V-ENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~-~~~  151 (370)
                      .|..++.+++|+..+...++.|+.++  +++. +.+........ ++++.|+|++.++... +.|..++ .++  . ...
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence            46678999988766555567798888  4443 44444455567 9999999987665434 4455555 333  2 221


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg  230 (370)
                      ....    ...+..+++.++|+.+++.+..               ....+..++.++++...... .......+++++++
T Consensus        98 ~~~~----~~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          98 IPVF----SGPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             EECS----SSCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred             cccc----cCcccccccccccccccccccc---------------ccccccccccccccccccccccccccccccccccc
Confidence            1111    1357889999999877664320               12234455655544322222 22345778999999


Q ss_pred             CEEEEEeC-Cc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEe
Q 017520          231 DYVVVCES-WK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAII  281 (370)
Q Consensus       231 ~~l~v~~~-~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~  281 (370)
                      +.++++.. .+ |..|+.+..   ...............++.+++|++.++..
T Consensus       159 ~~~l~sgs~d~~i~i~d~~~~---~~~~~~~~~~~~i~~v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         159 PFRIISGSDDNTVAIFEGPPF---KFKSTFGEHTKFVHSVRYNPDGSLFASTG  208 (311)
T ss_dssp             SCEEEEEETTSCEEEEETTTB---EEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeeeccccccccccccccccc---ccccccccccccccccccCcccccccccc
Confidence            86666543 44 888887643   22222222223345688899998766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.70  E-value=1.6e-06  Score=75.16  Aligned_cols=175  Identities=14%  Similarity=0.139  Sum_probs=109.1

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe-CCe-----EEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEcCCCeEEEEee
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ-DGT-----WVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVSEDGVENFLSY  154 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~-~g~-----~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~~~g~~~~~~~  154 (370)
                      -.++++.++|.++++..++.+..++ .+.     ..........+. ++++.++|++.++...+.+..++........  
T Consensus        58 v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~--  134 (299)
T d1nr0a2          58 ITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDIAVAACYKHIAIYSHGKLTEVP--  134 (299)
T ss_dssp             EEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSCEEEEESSEEEEEETTEEEEEE--
T ss_pred             EEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-ccccccccccccccccccccccccccccccc--
Confidence            4678889999999988899999888 321     111223345677 8999999987777655556555532222211  


Q ss_pred             cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe--cCCCCccceEEccCCCE
Q 017520          155 VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA--DGFYFANGVALSRDEDY  232 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~--~~~~~p~gi~~~~dg~~  232 (370)
                       ..   .....+++.+++++.++-.                 .++.|..+|.++++.....  ..-.....++++++++.
T Consensus       135 -~~---~~~~~~~~s~~~~~l~~g~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  193 (299)
T d1nr0a2         135 -IS---YNSSCVALSNDKQFVAVGG-----------------QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF  193 (299)
T ss_dssp             -CS---SCEEEEEECTTSCEEEEEE-----------------TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSE
T ss_pred             -cc---ccccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccccc
Confidence             11   2345688899987655532                 3477888887766554322  22334578999999998


Q ss_pred             EEEEeCCc-EEEEEeCCCCC-CceeeeccCCCCCCCceeECCCCCEEEEE
Q 017520          233 VVVCESWK-CRKYWLKGERK-GKLETFAENLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       233 l~v~~~~~-l~~~~~~~~~~-~~~~~~~~~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ++.+...+ |..|++..... .....+. ........++++++|.+.++.
T Consensus       194 l~~~~~d~~i~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~l~sg  242 (299)
T d1nr0a2         194 LVATDQSRKVIPYSVANNFELAHTNSWT-FHTAKVACVSWSPDNVRLATG  242 (299)
T ss_dssp             EEEEETTSCEEEEEGGGTTEESCCCCCC-CCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccccccccccccccccccc-ccccccccccccccccceEEE
Confidence            88887777 99998764311 1111111 111223457789999866554

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.60  E-value=5.1e-05  Score=67.84  Aligned_cols=149  Identities=10%  Similarity=0.009  Sum_probs=89.7

Q ss_pred             cceEEcCCCcEE-EEecCCeEEEEe--CCeEEEE---EecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC-eEEEE
Q 017520           82 EDASMDKNGVIY-TATRDGWIKRLQ--DGTWVNW---KFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-VENFL  152 (370)
Q Consensus        82 ~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~~~~---~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g-~~~~~  152 (370)
                      .+++++++|.+. ++..+|.|..|+  +++.+..   ....+... +++++++|++.++....+ |..++ .++ .+...
T Consensus        11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~   89 (371)
T d1k8kc_          11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL   89 (371)
T ss_dssp             CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred             EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence            789999999766 566788898888  5654433   22344566 999999998666443434 55555 444 33222


Q ss_pred             eecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE--ecCC-CCccceEEccC
Q 017520          153 SYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV--ADGF-YFANGVALSRD  229 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~--~~~~-~~p~gi~~~~d  229 (370)
                      .. .+ ....+..++++|+|+..++.+.               ...-.++.++.........  .... .....++++|+
T Consensus        90 ~~-~~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          90 VI-LR-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             EC-CC-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             cc-cc-ccccccccccccccccceeecc---------------cCcceeeeeeccccccccccccccccccccccccccc
Confidence            11 11 1235778999999975555331               0122455555543332211  1222 23456889999


Q ss_pred             CCEEEEEeCCc-EEEEEeCC
Q 017520          230 EDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       230 g~~l~v~~~~~-l~~~~~~~  248 (370)
                      ++.+..+...+ |..|+...
T Consensus       153 ~~~l~s~s~D~~v~v~~~~~  172 (371)
T d1k8kc_         153 SVLLAAGSCDFKCRIFSAYI  172 (371)
T ss_dssp             SSEEEEEETTSCEEEEECCC
T ss_pred             ccceeccccCcEEEEEeecc
Confidence            99777776666 88888654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.8e-05  Score=66.40  Aligned_cols=181  Identities=12%  Similarity=0.091  Sum_probs=109.6

Q ss_pred             CCCcceEEcCCCcEEEEecCCeEEEEe--CC-e---EEEEE--ecCCCceeceEEcCCCcEEEE-eCCCceEEEc-CCC-
Q 017520           79 NHPEDASMDKNGVIYTATRDGWIKRLQ--DG-T---WVNWK--FIDSQTLVGLTSTKEGHLIIC-DNANGLHKVS-EDG-  147 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g-~---~~~~~--~~~~~p~~gl~~d~~G~L~v~-~~~~gi~~~~-~~g-  147 (370)
                      ....+++++++|...++..+|.|..|+  .+ .   .....  ...+... ++++.++|+.+++ ..++.|..++ ... 
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEE-EEEEcCCCCEEEEeecccccccccccccc
Confidence            356889999999755444588899998  22 1   22221  1223456 8999999986654 4444455555 322 


Q ss_pred             eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEE
Q 017520          148 VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVAL  226 (370)
Q Consensus       148 ~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~  226 (370)
                      .+..... .+. ...+..+++++++.+.++..                 ..+.+..++..+++....... ......+++
T Consensus       131 ~~~~~~~-~~~-~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         131 PRIKAEL-TSS-APACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEEE-ECS-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccccccc-ccc-cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccc
Confidence            2211111 111 12456788899998776643                 346788899887766554443 334567899


Q ss_pred             ccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEE-EecC
Q 017520          227 SRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIA-IIKL  283 (370)
Q Consensus       227 ~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~-~~~~  283 (370)
                      +++++.++++...+ +..|++...+  ....+  ...+....++++++|++.++ ...+
T Consensus       192 s~~~~~~~~~~~d~~v~i~d~~~~~--~~~~~--~~~~~i~~l~~~~~~~~l~~~~~d~  246 (337)
T d1gxra_         192 SNDGTKLWTGGLDNTVRSWDLREGR--QLQQH--DFTSQIFSLGYCPTGEWLAVGMESS  246 (337)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTE--EEEEE--ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccccccccccccccccccce--eeccc--ccccceEEEEEcccccccceecccc
Confidence            99999888888777 8888875432  11222  12333456778888875554 4443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.51  E-value=1.9e-05  Score=68.89  Aligned_cols=138  Identities=18%  Similarity=0.139  Sum_probs=81.8

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEecC-------CCceeceEEcCCCc-EEEEeCCC--------
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFID-------SQTLVGLTSTKEGH-LIICDNAN--------  138 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~~-------~~p~~gl~~d~~G~-L~v~~~~~--------  138 (370)
                      .+|.++++++||+ +|++. .++.|..++  +++...-....       ..|. ++++++||+ +|++....        
T Consensus        40 ~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          40 FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceE-EEEEecCCCEEEEEecCCcceeeeec
Confidence            4799999999985 67776 678999999  66544322211       2467 899999996 77775321        


Q ss_pred             ----ceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeE
Q 017520          139 ----GLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNIT  211 (370)
Q Consensus       139 ----gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~  211 (370)
                          .+..++ .++  ...+.....+   .....+...+++++|+++.                    .+..++..+++.
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~  175 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGSLYVAGP--------------------DIYKMDVKTGKY  175 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSCEEEESS--------------------SEEEECTTTCCE
T ss_pred             cCcceEEEEecccceeeeEEEeeecc---CceEEEEecCCCEEEEeCC--------------------cceEEEccCCCE
Confidence                122222 122  1100000000   1233455667778887742                    466677766665


Q ss_pred             EEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          212 TLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       212 ~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      .........+.++++++++..+|+.....
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (346)
T d1jmxb_         176 TVALPLRNWNRKGYSAPDVLYFWPHQSPR  204 (346)
T ss_dssp             EEEECSTTCCCTTBCCCBCCCCCCCCCTT
T ss_pred             EEEEecCCCccceEEeccccEEEEEecCC
Confidence            54444445567777777777666665544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.43  E-value=0.00013  Score=62.99  Aligned_cols=214  Identities=15%  Similarity=0.117  Sum_probs=123.4

Q ss_pred             CCCcceEEcCCCc-EEEEe-cCCeEEEEe--CCeEEEEEec------CCCceeceEEcCCCc-EEEEeCC----------
Q 017520           79 NHPEDASMDKNGV-IYTAT-RDGWIKRLQ--DGTWVNWKFI------DSQTLVGLTSTKEGH-LIICDNA----------  137 (370)
Q Consensus        79 ~~P~~i~~d~~G~-l~v~~-~~g~I~~~~--~g~~~~~~~~------~~~p~~gl~~d~~G~-L~v~~~~----------  137 (370)
                      ..|.+|++++||+ +|++. .++.|..|+  +++.......      ...+. +++++++|+ +|++...          
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee-eEEEcCCCcEEEEeecCCcceeeeccc
Confidence            5799999999986 67765 688999999  6765433221      22467 899999996 6666432          


Q ss_pred             --CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCC-CCCcc-----------c------e---ec
Q 017520          138 --NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSK-YLPHE-----------Y------C---LD  191 (370)
Q Consensus       138 --~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~-~~~~~-----------~------~---~~  191 (370)
                        ..+..++ .++ .......     ...++.+++++||+ +|+++.... ++...           .      .   ..
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA  187 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCC
T ss_pred             cccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccceecCCcce
Confidence              1233333 333 2111111     13577899999995 665532100 00000           0      0   00


Q ss_pred             ------------------------ccccCCCceEEEEeCCCCeEEEE--ecCCCCccceEEccCCCEEEEEeCCcEEEEE
Q 017520          192 ------------------------ILEGKPHGQLLKYDPSSNITTLV--ADGFYFANGVALSRDEDYVVVCESWKCRKYW  245 (370)
Q Consensus       192 ------------------------~~~~~~~g~l~~~d~~t~~~~~~--~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~  245 (370)
                                              .........+..++..++.....  ......+..+++++++..++..+ +.|.+||
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~d  266 (337)
T d1pbyb_         188 VWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY-NVLESFD  266 (337)
T ss_dssp             CCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE-SEEEEEE
T ss_pred             eeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc-ccEEEEE
Confidence                                    00011122456666655554322  22233455677889998777664 3488899


Q ss_pred             eCCCCCCceeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC
Q 017520          246 LKGERKGKLETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA  324 (370)
Q Consensus       246 ~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~  324 (370)
                      +...+.  ...+  ..+..+..+++++||+ +|++...+                                   .|..+|
T Consensus       267 ~~~~~~--~~~~--~~~~~~~~~~~s~dG~~l~v~~~~~-----------------------------------~i~v~D  307 (337)
T d1pbyb_         267 LEKNAS--IKRV--PLPHSYYSVNVSTDGSTVWLGGALG-----------------------------------DLAAYD  307 (337)
T ss_dssp             TTTTEE--EEEE--ECSSCCCEEEECTTSCEEEEESBSS-----------------------------------EEEEEE
T ss_pred             CCCCcE--EEEE--cCCCCEEEEEECCCCCEEEEEeCCC-----------------------------------cEEEEE
Confidence            765422  1222  2344588899999996 67775443                                   477888


Q ss_pred             C-CCcEEEEEeCCCC
Q 017520          325 E-DGTIIRNLVDPTG  338 (370)
Q Consensus       325 ~-~g~~~~~~~~~~g  338 (370)
                      . .++.+..+..+.+
T Consensus       308 ~~t~~~v~~i~~~g~  322 (337)
T d1pbyb_         308 AETLEKKGQVDLPGN  322 (337)
T ss_dssp             TTTCCEEEEEECGGG
T ss_pred             CCCCcEEEEEECCCC
Confidence            5 5888888876543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.40  E-value=1.2e-05  Score=74.14  Aligned_cols=157  Identities=11%  Similarity=0.039  Sum_probs=99.7

Q ss_pred             EecCCCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEE--EEEecCCCceeceEE----cCCCc-EEEEeCC-Cce
Q 017520           72 KVGEGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV--NWKFIDSQTLVGLTS----TKEGH-LIICDNA-NGL  140 (370)
Q Consensus        72 ~~~~~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~--~~~~~~~~p~~gl~~----d~~G~-L~v~~~~-~gi  140 (370)
                      .+..|  ..|+++++++||+ +|+++.+|.|..++  +++..  .-......+. ++++    ++||+ ||++... +.+
T Consensus        57 ~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          57 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCCeE
Confidence            34445  3799999999995 77888899999999  55422  2223344455 5554    56897 6776654 457


Q ss_pred             EEEc-CCC--eEEEEee---cCC---cccccccceEEcCCCcEE-EEeCCCCCCCccceecccccCCCceEEEEeCCCCe
Q 017520          141 HKVS-EDG--VENFLSY---VNG---SKLRFANDVVEASDGSLY-FTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI  210 (370)
Q Consensus       141 ~~~~-~~g--~~~~~~~---~~g---~~~~~~~~l~~d~~G~l~-v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~  210 (370)
                      ..++ .++  ...+...   ...   .+......++++++|..+ ++..                 ..+.+..+|..+.+
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-----------------~~~~i~~~d~~~~~  196 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK-----------------ETGKILLVDYTDLN  196 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEETTCSS
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc-----------------cCCeEEEEEccCCC
Confidence            7777 555  3333211   010   112234457888888644 4432                 45789999877654


Q ss_pred             EEEE--ecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520          211 TTLV--ADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       211 ~~~~--~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~  248 (370)
                      ...+  ......|.++++++||+.++++...+  +..++.+.
T Consensus       197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         197 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             cceEEEEcccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence            3222  23345789999999999999998766  66677543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.39  E-value=1.6e-05  Score=69.41  Aligned_cols=96  Identities=18%  Similarity=0.121  Sum_probs=67.2

Q ss_pred             ceEEcCCCcEEE-EeCCCceEEEc-CCC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccC
Q 017520          122 GLTSTKEGHLII-CDNANGLHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       122 gl~~d~~G~L~v-~~~~~gi~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~  196 (370)
                      |++++++|+.++ ++..+.|..+| +++  ++.+. . +.  ...|.+++++|||+ +|++..                 
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~-~-~~--~~~p~~l~~spDG~~l~v~~~-----------------   59 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCV-M-PD--KFGPGTAMMAPDNRTAYVLNN-----------------   59 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEE-C-SS--CCSSCEEEECTTSSEEEEEET-----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEE-c-CC--CCCcceEEECCCCCEEEEEEC-----------------
Confidence            567888887655 45456788898 666  33321 1 11  13578999999996 778864                 


Q ss_pred             CCceEEEEeCCCCeEEEEecC-------CCCccceEEccCCCEEEEEeC
Q 017520          197 PHGQLLKYDPSSNITTLVADG-------FYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~-------~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      ..+.|+.||.++++.......       ...|.++++++||+.+|++..
T Consensus        60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            347899999988866433221       235789999999999999874

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.36  E-value=2e-05  Score=72.38  Aligned_cols=201  Identities=14%  Similarity=0.090  Sum_probs=116.4

Q ss_pred             CCCcCCCcceEEc--CCC-cEEEEe-cCCeEEEEe--CCeEEEEEe--cCCCceeceEEcCCCc-EEEEeCCC-ce----
Q 017520           75 EGSVNHPEDASMD--KNG-VIYTAT-RDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTSTKEGH-LIICDNAN-GL----  140 (370)
Q Consensus        75 ~~~~~~P~~i~~d--~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~--~~~~p~~gl~~d~~G~-L~v~~~~~-gi----  140 (370)
                      .|....|.....+  +|| +||+.+ .+++|.+++  +++......  .+..|+ |++++++|+ +||+.... .+    
T Consensus        66 ~gd~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~  144 (441)
T d1qnia2          66 NGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPN  144 (441)
T ss_dssp             CCCBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSC
T ss_pred             cCcccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccC
Confidence            3445678666655  577 699998 788999999  677655443  356799 999999995 78875432 22    


Q ss_pred             --------------EEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCC---------ccce-----
Q 017520          141 --------------HKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLP---------HEYC-----  189 (370)
Q Consensus       141 --------------~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~---------~~~~-----  189 (370)
                                    ..++ .+. +..... ..    ..+..++++++|+ +|++...++-..         .++.     
T Consensus       145 dg~~~~~~~~~~~~~~iD~~t~~v~~qI~-v~----~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~  219 (441)
T d1qnia2         145 DGTDFSLDNSYTMFTAIDAETMDVAWQVI-VD----GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNV  219 (441)
T ss_dssp             SSSCCCGGGEEEEEEEEETTTCSEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEH
T ss_pred             cccccccccccceEEeecCccceeeEEEe-cC----CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCc
Confidence                          1233 122 111111 11    3578899999995 888864422110         0000     


Q ss_pred             ---------ecccccCCCceEEEEeC-CCCeEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC------CC
Q 017520          190 ---------LDILEGKPHGQLLKYDP-SSNITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE------RK  251 (370)
Q Consensus       190 ---------~~~~~~~~~g~l~~~d~-~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~------~~  251 (370)
                               ........ .++..++. .+..+.........|.|+.++|||+++|+++...  |.++|++.-      +.
T Consensus       220 p~~~~~~~dGk~~~v~~-~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         220 ERIAAAVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             HHHHHHHHTTCCBCCTT-CCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             cceEEEecCCCEEEeCC-CCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                     00111112 23444443 3333333445557899999999999999998766  999997421      11


Q ss_pred             Cceeeec-cCCCC-CCCceeECCCCCEEEEEec
Q 017520          252 GKLETFA-ENLPG-APDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       252 ~~~~~~~-~~~~g-~p~~i~~d~~G~lwv~~~~  282 (370)
                      .....+. +...+ .|-.-.+|++|+.|.+..-
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~  331 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFI  331 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEETT
T ss_pred             CcceEEEeecccccCcccceecCCceEEEcccc
Confidence            1111111 11111 2333578999999988743

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=1.8e-05  Score=69.59  Aligned_cols=132  Identities=11%  Similarity=0.057  Sum_probs=89.3

Q ss_pred             eEEcC-CCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCC
Q 017520          123 LTSTK-EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPH  198 (370)
Q Consensus       123 l~~d~-~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~  198 (370)
                      .-|+| ||++++....+.|+.++ .+| ...+.   .   ...+..++++|||+ |+++...                ..
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~---~---~~~v~~~~~spDg~~l~~~~~~----------------~g   65 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---E---PLRIRYVRRGGDTKVAFIHGTR----------------EG   65 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEECS---C---CSCEEEEEECSSSEEEEEEEET----------------TE
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEEEcc---C---CCCEEEEEECCCCCEEEEEEcC----------------CC
Confidence            34667 88877766666788888 455 44331   1   13577899999996 4444221                22


Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEE
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFW  277 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lw  277 (370)
                      ..|+.+|.++++.+.+.........++++|||+.++.+...+ ++.++.++.+.   .............+++.++|.+.
T Consensus        66 ~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~spdg~~l  142 (360)
T d1k32a3          66 DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP---TVIERSREAMITDFTISDNSRFI  142 (360)
T ss_dssp             EEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE---EEEEECSSSCCCCEEECTTSCEE
T ss_pred             CEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccce---eeeeecccccccchhhccceeee
Confidence            368899999888887766666778899999999888887777 88888765422   22222333345678899999755


Q ss_pred             EE
Q 017520          278 IA  279 (370)
Q Consensus       278 v~  279 (370)
                      +.
T Consensus       143 a~  144 (360)
T d1k32a3         143 AY  144 (360)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.30  E-value=0.00078  Score=57.89  Aligned_cols=246  Identities=12%  Similarity=0.052  Sum_probs=128.5

Q ss_pred             CCCcCCCcceEEcCCCc-EEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC-
Q 017520           75 EGSVNHPEDASMDKNGV-IYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG-  147 (370)
Q Consensus        75 ~~~~~~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g-  147 (370)
                      .|.-..-.+|++.++|. |.+|+.||.|..|+  +++.. .+........ .+++.++|.+.++....+ +..++ ... 
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~~~~~~~  130 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIYNLKTRE  130 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeecccccccc
Confidence            35444567899999886 45566899999999  66543 3333344566 899999998665443433 44443 211 


Q ss_pred             --eEEEEeecCCccc--------ccccceEEcCCCcEEEEeCCCCC----------CCcc-----ceecccccCCCceEE
Q 017520          148 --VENFLSYVNGSKL--------RFANDVVEASDGSLYFTVSSSKY----------LPHE-----YCLDILEGKPHGQLL  202 (370)
Q Consensus       148 --~~~~~~~~~g~~~--------~~~~~l~~d~~G~l~v~d~~~~~----------~~~~-----~~~~~~~~~~~g~l~  202 (370)
                        ...... ..+...        ..........++...........          ....     ....+.....++.|.
T Consensus       131 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  209 (340)
T d1tbga_         131 GNVRVSRE-LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK  209 (340)
T ss_dssp             SCCCEEEE-ECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             ccccccee-cccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEE
Confidence              111100 010000        00000011111111111110000          0000     000011223457788


Q ss_pred             EEeCCCCeEEEEecC-CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeecc-CCCCCCCceeECCCCCEEEE
Q 017520          203 KYDPSSNITTLVADG-FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAE-NLPGAPDNINLAPDGTFWIA  279 (370)
Q Consensus       203 ~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~-~~~g~p~~i~~d~~G~lwv~  279 (370)
                      .+|..+++....... ....+.++++++++.++.+...+ |..+++....  ....+.. ........++++++|++.++
T Consensus       210 i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~  287 (340)
T d1tbga_         210 LWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSHDNIICGITSVSFSKSGRLLLA  287 (340)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE--EEEEECCTTCCSCEEEEEECSSSCEEEE
T ss_pred             EEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc--cccccccccccCceEEEEECCCCCEEEE
Confidence            889887766544333 33457899999999887777777 8888875431  1222211 11112345778999986665


Q ss_pred             EecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CC-EEEE
Q 017520          280 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYV  356 (370)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~  356 (370)
                      ....                                  +.|..+| .+++.+..+....+    .++.+... ++ .|..
T Consensus       288 g~~d----------------------------------g~i~iwd~~~~~~~~~~~~H~~----~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         288 GYDD----------------------------------FNCNVWDALKADRAGVLAGHDN----RVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             EETT----------------------------------SCEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSCEEE
T ss_pred             EECC----------------------------------CEEEEEECCCCcEEEEEcCCCC----CEEEEEEeCCCCEEEE
Confidence            4332                                  3467777 46888888865443    45666554 33 4655


Q ss_pred             EeCCCC
Q 017520          357 ISLTSN  362 (370)
Q Consensus       357 gs~~~~  362 (370)
                      |+.++.
T Consensus       330 ~s~Dg~  335 (340)
T d1tbga_         330 GSWDSF  335 (340)
T ss_dssp             EETTSC
T ss_pred             EccCCE
Confidence            665543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.27  E-value=2.8e-05  Score=68.36  Aligned_cols=165  Identities=10%  Similarity=0.067  Sum_probs=102.1

Q ss_pred             EcC-CCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcE-EEEeCCCc--eEEEc-CCC-eEEEEeecCC
Q 017520           86 MDK-NGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHL-IICDNANG--LHKVS-EDG-VENFLSYVNG  157 (370)
Q Consensus        86 ~d~-~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L-~v~~~~~g--i~~~~-~~g-~~~~~~~~~g  157 (370)
                      +.| ||++.+...+|.|+.++  ++....+ ...++.. ++++++||+. +++....|  ++.++ .+| .+.+...   
T Consensus        10 fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~---   84 (360)
T d1k32a3          10 FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEEN---   84 (360)
T ss_dssp             EEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCC---
T ss_pred             ccCCCCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCC---
Confidence            345 88888777788999999  5555554 3455677 9999999964 44443433  55566 555 4443221   


Q ss_pred             cccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CCCCccceEEccCCCEEEEE
Q 017520          158 SKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GFYFANGVALSRDEDYVVVC  236 (370)
Q Consensus       158 ~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~~~p~gi~~~~dg~~l~v~  236 (370)
                        ...+..++++|||+..++..                 ..+.++.++.++++...... .......+++++||+.+.++
T Consensus        85 --~~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~  145 (360)
T d1k32a3          85 --LGNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYG  145 (360)
T ss_dssp             --CCSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEE
T ss_pred             --CceEEeeeecccccccceec-----------------cccccccccccccceeeeeecccccccchhhccceeeeeee
Confidence              23567899999997555533                 34678999988777655443 33455789999999987765


Q ss_pred             eCC---------c--EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEE
Q 017520          237 ESW---------K--CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWI  278 (370)
Q Consensus       237 ~~~---------~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv  278 (370)
                      ...         .  +..++..+.   ...... .........++.++|+..+
T Consensus       146 ~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~~-~~~~~~~~~~~spdg~~l~  194 (360)
T d1k32a3         146 FPLKHGETDGYVMQAIHVYDMEGR---KIFAAT-TENSHDYAPAFDADSKNLY  194 (360)
T ss_dssp             EEECSSTTCSCCEEEEEEEETTTT---EEEECS-CSSSBEEEEEECTTSCEEE
T ss_pred             ccccccceeeccccceeeeccccC---ceeeec-ccccccccccccCCCCEEE
Confidence            421         1  566776543   222211 1112223456777776333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.23  E-value=0.0012  Score=58.25  Aligned_cols=200  Identities=13%  Similarity=0.082  Sum_probs=111.3

Q ss_pred             cceEEcCCCc-EEEEecCCeEEEEe--CCeEEEEE-ecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC-eEEEEee
Q 017520           82 EDASMDKNGV-IYTATRDGWIKRLQ--DGTWVNWK-FIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG-VENFLSY  154 (370)
Q Consensus        82 ~~i~~d~~G~-l~v~~~~g~I~~~~--~g~~~~~~-~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g-~~~~~~~  154 (370)
                      .+|++.++|+ |.+++.+|.|..++  .++..... ....... .+.+.+++...+ +...+.+..++ .+. .......
T Consensus       125 ~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~  203 (388)
T d1erja_         125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI  203 (388)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeecccccccccccc
Confidence            4688888885 45667899999998  55543332 2334456 788888886544 44434455555 444 2221111


Q ss_pred             cCCcccccccceEEc-CCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--------CCCccceE
Q 017520          155 VNGSKLRFANDVVEA-SDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--------FYFANGVA  225 (370)
Q Consensus       155 ~~g~~~~~~~~l~~d-~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--------~~~p~gi~  225 (370)
                       .    .....+.+. .+|++.++.+                 .++.|..+|..++........        ......++
T Consensus       204 -~----~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         204 -E----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             -S----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             -c----cccccccccCCCCCeEEEEc-----------------CCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence             1    122334443 4666655532                 346678888776544322211        12346789


Q ss_pred             EccCCCEEEEEeCCc-EEEEEeCCCCCCc---------eeeeccCCCCCCCceeECCCCCEEEEEecCchhHHHhhhcch
Q 017520          226 LSRDEDYVVVCESWK-CRKYWLKGERKGK---------LETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMKILNSSK  295 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~-l~~~~~~~~~~~~---------~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~~~~~~~  295 (370)
                      ++++++.++.+...+ |..|++.......         ..............++++++|++.++....            
T Consensus       262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~d------------  329 (388)
T d1erja_         262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD------------  329 (388)
T ss_dssp             ECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETT------------
T ss_pred             ECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCC------------
Confidence            999999888777777 8888875431110         000000112233457788888755544332            


Q ss_pred             hHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCC
Q 017520          296 LIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTG  338 (370)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g  338 (370)
                                            +.|..+| .+++.+..+....+
T Consensus       330 ----------------------g~i~vwd~~~~~~~~~l~~H~~  351 (388)
T d1erja_         330 ----------------------RGVLFWDKKSGNPLLMLQGHRN  351 (388)
T ss_dssp             ----------------------SEEEEEETTTCCEEEEEECCSS
T ss_pred             ----------------------CEEEEEECCCCcEEEEEeCCCC
Confidence                                  4577777 56888888876554

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.22  E-value=0.00023  Score=63.00  Aligned_cols=147  Identities=7%  Similarity=-0.070  Sum_probs=85.7

Q ss_pred             cceEEcCCC-cEEEEe-----cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCC---------c-eEE
Q 017520           82 EDASMDKNG-VIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNAN---------G-LHK  142 (370)
Q Consensus        82 ~~i~~d~~G-~l~v~~-----~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~---------g-i~~  142 (370)
                      .++++.+|| ++|+..     ..++|+.+|  +|+...... .+... ++++++||+ ||++....         + +..
T Consensus        24 ~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          24 NDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-CCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            445566666 567654     335688888  666443332 34455 799999995 77765331         2 444


Q ss_pred             Ec-CCC-eEEEEeecCC---cccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          143 VS-EDG-VENFLSYVNG---SKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       143 ~~-~~g-~~~~~~~~~g---~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                      +| .++ ..........   .....+..++++++|+ +|+....                ..+.+..++..+.+..   .
T Consensus       102 ~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~---~  162 (373)
T d2madh_         102 FDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSDD---Q  162 (373)
T ss_pred             EECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeEE---E
Confidence            55 445 2211111111   1123456788888874 5665432                3345566666555443   2


Q ss_pred             CCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC
Q 017520          217 GFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE  249 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~  249 (370)
                      ....+.+++++++|+.+|++....  +.+++....
T Consensus       163 ~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~  197 (373)
T d2madh_         163 LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG  197 (373)
T ss_pred             EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence            234578899999999888877654  888876654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.22  E-value=0.00035  Score=61.14  Aligned_cols=144  Identities=10%  Similarity=-0.054  Sum_probs=85.0

Q ss_pred             cCCC-cEEEEe-----cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC----------CceEEEc-CC
Q 017520           87 DKNG-VIYTAT-----RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA----------NGLHKVS-ED  146 (370)
Q Consensus        87 d~~G-~l~v~~-----~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~----------~gi~~~~-~~  146 (370)
                      .+|| ++|+.+     ..+.|+.+|  +|+....... +... ++++++||+ ||+++..          +.|..+| .+
T Consensus        10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t   87 (355)
T d2bbkh_          10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT   87 (355)
T ss_dssp             CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT
T ss_pred             CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCC-ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCC
Confidence            3555 578876     234699999  6664433333 3444 799999996 8887531          2366777 56


Q ss_pred             C-eEEEEeecCCc---ccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC----
Q 017520          147 G-VENFLSYVNGS---KLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG----  217 (370)
Q Consensus       147 g-~~~~~~~~~g~---~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~----  217 (370)
                      + ...........   -...++.++++++|+ +++.+..                ....+..++..+++.......    
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~  151 (355)
T d2bbkh_          88 LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPDCY  151 (355)
T ss_dssp             CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEE
T ss_pred             CCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeEEecCCcc
Confidence            6 32222211111   123578899999985 7777543                334566677766654322211    


Q ss_pred             ----CCCccceEEccCCCEEEEEeCCc--EEEEEeCC
Q 017520          218 ----FYFANGVALSRDEDYVVVCESWK--CRKYWLKG  248 (370)
Q Consensus       218 ----~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~  248 (370)
                          ......+++++|++.+++.....  +..++...
T Consensus       152 ~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         152 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             eEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence                11234578899999888876655  55565443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.22  E-value=0.00062  Score=60.15  Aligned_cols=177  Identities=13%  Similarity=0.076  Sum_probs=101.6

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEe------------------cCCCceeceEEcCCCcEEEEeCCC
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKF------------------IDSQTLVGLTSTKEGHLIICDNAN  138 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~------------------~~~~p~~gl~~d~~G~L~v~~~~~  138 (370)
                      .-.+|+++++|++.++..++.|..|+  +++.. .+..                  ...... ++++.++|+++++....
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            45789999999866555688899998  55432 2210                  112245 78999999866654444


Q ss_pred             c-eEEEc-CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          139 G-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       139 g-i~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                      | |..++ ..+ .....   .+. ...+..+.+.+++...++..                 ..+.+..+|..+.......
T Consensus       143 g~v~i~~~~~~~~~~~~---~~h-~~~v~~~~~~~~~~~~~~~~-----------------~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         143 RLIRIWDIENRKIVMIL---QGH-EQDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             SCEEEEETTTTEEEEEE---CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccc---ccc-cccccccccccccccccccc-----------------cceeeeeeecccccccccc
Confidence            5 44445 444 22111   111 13567788888886555432                 3467888888776655444


Q ss_pred             cCCCCccceEEc-cCCCEEEEEeCCc-EEEEEeCCCCCCceeeec---c---CCCCCCCceeECCCCCEEEEE
Q 017520          216 DGFYFANGVALS-RDEDYVVVCESWK-CRKYWLKGERKGKLETFA---E---NLPGAPDNINLAPDGTFWIAI  280 (370)
Q Consensus       216 ~~~~~p~gi~~~-~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~---~---~~~g~p~~i~~d~~G~lwv~~  280 (370)
                      ........+.+. .+++.++.+...+ |..++......  ...+.   .   ...+....++++++|++.++.
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~  272 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL--VERLDSENESGTGHKDSVYSVVFTRDGQSVVSG  272 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE--EEEEC------CCCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccCCCCCeEEEEcCCCeEEEeecccCcc--ceeeccccccccCCCCCEEEEEECCCCCEEEEE
Confidence            433344445554 4777676666666 88888754321  11111   0   111223457788888755544

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.17  E-value=0.00067  Score=59.12  Aligned_cols=182  Identities=10%  Similarity=-0.017  Sum_probs=91.1

Q ss_pred             CCcceEEcCCCcEEEEecCCeE--EEEe--CCe---EEEEEecCC-CceeceEEcC--CCcEEEEeCCCc-eEEEc-CCC
Q 017520           80 HPEDASMDKNGVIYTATRDGWI--KRLQ--DGT---WVNWKFIDS-QTLVGLTSTK--EGHLIICDNANG-LHKVS-EDG  147 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I--~~~~--~g~---~~~~~~~~~-~p~~gl~~d~--~G~L~v~~~~~g-i~~~~-~~g  147 (370)
                      .|.+++++++|...+...+..+  ..++  ..+   ...+..... ... .+++.|  +|.++++....| |..++ ..+
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~-~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVT-TVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEE-EEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEE-EEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            5778999998876644323333  3333  222   233332222 345 899976  455555433344 43344 222


Q ss_pred             --eEEEE---e-ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCC
Q 017520          148 --VENFL---S-YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYF  220 (370)
Q Consensus       148 --~~~~~---~-~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~  220 (370)
                        ...+.   . ... .....+.+++++++|+..++.+.               .....+..++.++++......+ ...
T Consensus        98 ~~~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~h~~~  161 (325)
T d1pgua1          98 KESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGE---------------GRDNFGVFISWDSGNSLGEVSGHSQR  161 (325)
T ss_dssp             GGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEEC---------------CSSCSEEEEETTTCCEEEECCSCSSC
T ss_pred             cceeeeecccccccc-cccCcEEEEEECCCCCccceeec---------------cccceEEEEeecccccceeeeecccc
Confidence              11111   1 111 11234678999999976555332               0223456666665554333222 334


Q ss_pred             ccceEEccCCCEEEE-EeCCc-EEEEEeCCCCCCceeeec--cCCCCCCCceeECCCC-CEEEEE
Q 017520          221 ANGVALSRDEDYVVV-CESWK-CRKYWLKGERKGKLETFA--ENLPGAPDNINLAPDG-TFWIAI  280 (370)
Q Consensus       221 p~gi~~~~dg~~l~v-~~~~~-l~~~~~~~~~~~~~~~~~--~~~~g~p~~i~~d~~G-~lwv~~  280 (370)
                      .+.+++++++..+++ +...+ +..|+....+.  .....  .........+++.+++ .+.++.
T Consensus       162 v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~--~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~  224 (325)
T d1pgua1         162 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF--SASDRTHHKQGSFVRDVEFSPDSGEFVITV  224 (325)
T ss_dssp             EEEEEECSSSSCEEEEEETTTEEEEEETTTBEE--EEEECSSSCTTCCEEEEEECSTTCCEEEEE
T ss_pred             cccccccccccceEEEeeccccccccccccccc--ceecccccCCCCccEEeeeccccceecccc
Confidence            577899998876555 44455 77787543221  11111  1122234457788764 555543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.12  E-value=0.00045  Score=61.40  Aligned_cols=181  Identities=8%  Similarity=-0.086  Sum_probs=101.4

Q ss_pred             CCcceEEcCCCcE-EEEecCCeEEEEe--CCeEEEEE---ecCCCceeceEEcCCCcEEEEeCCCc-eEEEc--CCC-eE
Q 017520           80 HPEDASMDKNGVI-YTATRDGWIKRLQ--DGTWVNWK---FIDSQTLVGLTSTKEGHLIICDNANG-LHKVS--EDG-VE  149 (370)
Q Consensus        80 ~P~~i~~d~~G~l-~v~~~~g~I~~~~--~g~~~~~~---~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~--~~g-~~  149 (370)
                      ...+|+++++|+. ..++.++.|..|+  ++..+...   .....+. ++.++++|+.+++....+ +..++  ... ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            4578899988864 4566889999998  55544332   2233456 899999997554433434 33333  222 22


Q ss_pred             EEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCe------------------E
Q 017520          150 NFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNI------------------T  211 (370)
Q Consensus       150 ~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~------------------~  211 (370)
                      .......+. ...+..++++|+|++.++.+                 .++.+..||...+.                  .
T Consensus       132 ~~~~~~~~~-~~~v~~v~~~p~~~~l~s~s-----------------~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (371)
T d1k8kc_         132 VCKHIKKPI-RSTVLSLDWHPNSVLLAAGS-----------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL  193 (371)
T ss_dssp             EEEEECTTC-CSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred             ccccccccc-ccccccccccccccceeccc-----------------cCcEEEEEeeccCccccccccccccccccceee
Confidence            222211111 13567789999998766533                 23455555543221                  1


Q ss_pred             -EEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEec
Q 017520          212 -TLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       212 -~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                       ..........++++++++++.++.+...+ |..||+....  ....+. ........+++.++|.+.++...
T Consensus       194 ~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~--~~~~~~-~~~~~v~s~~fs~d~~~la~g~d  263 (371)
T d1k8kc_         194 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM--AVATLA-SETLPLLAVTFITESSLVAAGHD  263 (371)
T ss_dssp             EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT--EEEEEE-CSSCCEEEEEEEETTEEEEEETT
T ss_pred             eeeccCccCcEEEEEeecccccccccccCCcceEEeeeccc--ceeeee-cccccceeeeecCCCCEEEEEcC
Confidence             11111122346789999999887777767 8888876532  122221 11111345677777776665433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=0.0026  Score=53.38  Aligned_cols=148  Identities=11%  Similarity=0.108  Sum_probs=92.9

Q ss_pred             CCCcceEEcCCCcEE-EEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCC-ceEEEc-CCC-eEEE
Q 017520           79 NHPEDASMDKNGVIY-TATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNAN-GLHKVS-EDG-VENF  151 (370)
Q Consensus        79 ~~P~~i~~d~~G~l~-v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~-gi~~~~-~~g-~~~~  151 (370)
                      ..-.+|+++++|.+. .++.||.|..|+  +++. ..+........ ++++++++.+.+..... .+...+ ... ....
T Consensus        18 ~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (317)
T d1vyhc1          18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT   96 (317)
T ss_dssp             SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC
T ss_pred             CCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeecccccccccccccccccccccccccccc
Confidence            345678999888754 556899999999  5653 34433445566 89999999876655443 344444 222 1111


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cCCCCccceEEccCC
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DGFYFANGVALSRDE  230 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~~~~p~gi~~~~dg  230 (370)
                      .   .+ .......+.+.++++..++..                 .++.+..+|..+++..... ........+++++++
T Consensus        97 ~---~~-~~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (317)
T d1vyhc1          97 M---HG-HDHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG  155 (317)
T ss_dssp             C---CC-CSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS
T ss_pred             c---cc-ccccceeeeccCCCceEEeec-----------------cCcceeEeecccceeeeEEccCCCcceeeecccCC
Confidence            1   11 113455678888887666533                 3467778887766554333 333455678899999


Q ss_pred             CEEEEEeCCc-EEEEEeCC
Q 017520          231 DYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       231 ~~l~v~~~~~-l~~~~~~~  248 (370)
                      +.++.+...+ |..++...
T Consensus       156 ~~l~~~~~d~~v~~~~~~~  174 (317)
T d1vyhc1         156 TLIASCSNDQTVRVWVVAT  174 (317)
T ss_dssp             SEEEEEETTSCEEEEETTT
T ss_pred             CEEEEEeCCCeEEEEeecc
Confidence            9777777666 88887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.03  E-value=0.00022  Score=61.58  Aligned_cols=140  Identities=11%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             eEEcCCCcEE-EEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEEEeec
Q 017520           84 ASMDKNGVIY-TATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYV  155 (370)
Q Consensus        84 i~~d~~G~l~-v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~~~~~  155 (370)
                      ....+.+.+. .+..++.|..++  +++.. .+....+... +++++++|+++++....| +..++ ...  ...+ .  
T Consensus       190 ~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~-~--  265 (340)
T d1tbga_         190 LSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTY-S--  265 (340)
T ss_dssp             EEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-C--
T ss_pred             eccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeeccccccccc-c--
Confidence            3344455444 455888899888  56543 3333345566 899999998666544444 55555 333  2222 1  


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-CCCccceEEccCCCEEE
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-FYFANGVALSRDEDYVV  234 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-~~~p~gi~~~~dg~~l~  234 (370)
                      .......+..++++++|++.++.+                 .++.|..||..+++......+ ......+++++|++.++
T Consensus       266 ~~~~~~~i~~~~~s~~~~~l~~g~-----------------~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~  328 (340)
T d1tbga_         266 HDNIICGITSVSFSKSGRLLLAGY-----------------DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVA  328 (340)
T ss_dssp             CTTCCSCEEEEEECSSSCEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred             cccccCceEEEEECCCCCEEEEEE-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEE
Confidence            111223567889999998766643                 357899999877765444443 33457899999999777


Q ss_pred             EEeCCc-EEEE
Q 017520          235 VCESWK-CRKY  244 (370)
Q Consensus       235 v~~~~~-l~~~  244 (370)
                      .+...+ |..|
T Consensus       329 s~s~Dg~v~iW  339 (340)
T d1tbga_         329 TGSWDSFLKIW  339 (340)
T ss_dssp             EEETTSCEEEE
T ss_pred             EEccCCEEEEe
Confidence            666666 6554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.01  E-value=4.9e-05  Score=67.65  Aligned_cols=108  Identities=8%  Similarity=0.079  Sum_probs=75.4

Q ss_pred             ccCceEecCCCcCCCcceEEcCCCcEEEEec------------------CCeEEEEeCCeEEEEEecCCCceeceEEcCC
Q 017520           67 LQDFIKVGEGSVNHPEDASMDKNGVIYTATR------------------DGWIKRLQDGTWVNWKFIDSQTLVGLTSTKE  128 (370)
Q Consensus        67 l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~------------------~g~I~~~~~g~~~~~~~~~~~p~~gl~~d~~  128 (370)
                      +.....+....+..|.+|++..+|.+|+++.                  .|.|+.++.++.+........|+ ||++++|
T Consensus       138 l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~~~~l~~pN-GI~~s~d  216 (340)
T d1v04a_         138 LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFAN-GINISPD  216 (340)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEEEEEESSEE-EEEECTT
T ss_pred             EEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEEcCCCCccc-eeEECCC
Confidence            3334444555567899999999999999851                  34566666556666666667899 9999998


Q ss_pred             C-cEEEEeCC-CceEEEc--CCC-eEEEEe-ecCCcccccccceEEcC-CCcEEEEeC
Q 017520          129 G-HLIICDNA-NGLHKVS--EDG-VENFLS-YVNGSKLRFANDVVEAS-DGSLYFTVS  179 (370)
Q Consensus       129 G-~L~v~~~~-~gi~~~~--~~g-~~~~~~-~~~g~~~~~~~~l~~d~-~G~l~v~d~  179 (370)
                      + .|||++.. ..|.+++  .++ .+.... ..+    ..|..+.+|+ +|.+|++..
T Consensus       217 ~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~~  270 (340)
T d1v04a_         217 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGCH  270 (340)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEEC
Confidence            8 59999876 5677776  344 332211 222    3688899996 789999954

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.96  E-value=0.00046  Score=61.25  Aligned_cols=192  Identities=11%  Similarity=-0.048  Sum_probs=104.1

Q ss_pred             CCCcceEEcCCC-cEEEEe-cCCeEEEEe--CCeEEEEEecCCCc--------eeceEEcCCCcEEEEeCCCceEEEcCC
Q 017520           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKFIDSQT--------LVGLTSTKEGHLIICDNANGLHKVSED  146 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~~~~~p--------~~gl~~d~~G~L~v~~~~~gi~~~~~~  146 (370)
                      ..|.++++.+|| .||+++ ..+.|..++  +++........+.+        . .+++.+||.+++.+..       ..
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~Dg~~~~~~~~-------~~  195 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAAT-HYLGSCPASLAASDLA-------AA  195 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTE-EECCCCTTSCEEEECC-------SS
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCce-EEEEcCCCCEEEEEec-------CC
Confidence            368899999998 588887 568899999  66654433322211        1 2333344443332211       11


Q ss_pred             C-eEEEEee-cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC-------
Q 017520          147 G-VENFLSY-VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG-------  217 (370)
Q Consensus       147 g-~~~~~~~-~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~-------  217 (370)
                      + ....... ........+.....+++|.++++..                   +.++.++...+........       
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~~~~  256 (368)
T d1mdah_         196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-------------------SSILQGDIPAAGATMKAAIDGNESGR  256 (368)
T ss_dssp             CCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-------------------SCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred             ceeeeeeecccccccccceeecccccCcEEEEecC-------------------CCEEEEeecCCceEEEeeccccccee
Confidence            2 1111110 0011112344556666766555532                   3445555443333322110       


Q ss_pred             ------CCCccceEEccCCCEEEEEeCCc----------EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC--EEEE
Q 017520          218 ------FYFANGVALSRDEDYVVVCESWK----------CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT--FWIA  279 (370)
Q Consensus       218 ------~~~p~gi~~~~dg~~l~v~~~~~----------l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~--lwv~  279 (370)
                            ...+..++++++++.+|+....+          |+++|.++.+.  ...+  .....+..+++++||+  +|++
T Consensus       257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~--~~~~--~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPI--SNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECC--EEEEEECEEEECCSSSCEEEEE
T ss_pred             eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcE--eEEe--cCCCceeEEEECCCCCEEEEEE
Confidence                  11245689999999899875321          77888765421  1111  1123477899999996  5666


Q ss_pred             EecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC
Q 017520          280 IIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD  335 (370)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~  335 (370)
                      ....                                  +.|..+|. .|+.+..+..
T Consensus       333 ~~~~----------------------------------~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         333 SAGT----------------------------------EVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             ETTT----------------------------------TEEEEEESSSCEEEEECCC
T ss_pred             eCCC----------------------------------CeEEEEECCCCCEEEEEEC
Confidence            5433                                  34788885 6888888754

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=0.0052  Score=53.15  Aligned_cols=228  Identities=12%  Similarity=0.066  Sum_probs=121.9

Q ss_pred             CcceEEcC--CCcEE-EEecCCeEEEEe--CC----eEE-----EEEecCCCceeceEEcCCCcEEEE-eCC-C-ceEEE
Q 017520           81 PEDASMDK--NGVIY-TATRDGWIKRLQ--DG----TWV-----NWKFIDSQTLVGLTSTKEGHLIIC-DNA-N-GLHKV  143 (370)
Q Consensus        81 P~~i~~d~--~G~l~-v~~~~g~I~~~~--~g----~~~-----~~~~~~~~p~~gl~~d~~G~L~v~-~~~-~-gi~~~  143 (370)
                      -.++++.+  +|.+. .|+.+|.|..|+  .+    ...     .+....+... .++++++|..++. ..+ . .+..+
T Consensus        66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~~  144 (325)
T d1pgua1          66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  144 (325)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEEE
Confidence            44677764  55444 566899998887  22    111     1122334455 8999999975543 322 2 24444


Q ss_pred             c-CCC--eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--
Q 017520          144 S-EDG--VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--  217 (370)
Q Consensus       144 ~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--  217 (370)
                      + .++  +..+    .+. ...++.+++.+++. +.++.+                 .++.+..||..+.+.......  
T Consensus       145 ~~~~~~~~~~~----~~h-~~~v~~~~~~~~~~~~~~~~~-----------------~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         145 SWDSGNSLGEV----SGH-SQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             ETTTCCEEEEC----CSC-SSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSSS
T ss_pred             eecccccceee----eec-ccccccccccccccceEEEee-----------------cccccccccccccccceeccccc
Confidence            4 445  3322    111 23567889998875 344432                 346788888765554433222  


Q ss_pred             --CCCccceEEccCC-CEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeEC---CCCCEEEEEecCchhHHHh
Q 017520          218 --FYFANGVALSRDE-DYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLA---PDGTFWIAIIKLDARRMKI  290 (370)
Q Consensus       218 --~~~p~gi~~~~dg-~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d---~~G~lwv~~~~~~~~~~~~  290 (370)
                        ......++++||+ +.+..+...+ |..||+...+  ....+. .......++.+.   ++|.+.++....       
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~--~~~~l~-~~~~~v~~~~~s~~~~dg~~l~s~s~D-------  272 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE--FLKYIE-DDQEPVQGGIFALSWLDSQKFATVGAD-------  272 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCC--EEEECC-BTTBCCCSCEEEEEESSSSEEEEEETT-------
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeecccc--cccccc-ccccccccceeeeeccCCCEEEEEeCC-------
Confidence              1234678999974 5444455556 8889865432  122221 112222333333   677766664432       


Q ss_pred             hhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEE-ECCEEEEEeCCCCeEEEEe
Q 017520          291 LNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQ-VDNHLYVISLTSNFIGKVQ  368 (370)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~-~~g~L~~gs~~~~~i~~~~  368 (370)
                                                 +.|..+| ..++.+..+.............+.. .++.|.-++.+ ..|.+.+
T Consensus       273 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d-g~i~vwd  324 (325)
T d1pgua1         273 ---------------------------ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD-GTLNFYE  324 (325)
T ss_dssp             ---------------------------SEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT-SCEEEEE
T ss_pred             ---------------------------CeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECC-CEEEEEE
Confidence                                       3466667 4588888886544322222223332 34666656655 5566555


Q ss_pred             C
Q 017520          369 L  369 (370)
Q Consensus       369 ~  369 (370)
                      |
T Consensus       325 l  325 (325)
T d1pgua1         325 L  325 (325)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.89  E-value=0.0041  Score=56.10  Aligned_cols=204  Identities=9%  Similarity=0.026  Sum_probs=103.2

Q ss_pred             ceEEcCCCc-EEEEe-cCCeEEEEe--CCe--EEEEEecCCCceeceEEcCCCc-EEEEeCCC-ceEEEc-CCC-eEEEE
Q 017520           83 DASMDKNGV-IYTAT-RDGWIKRLQ--DGT--WVNWKFIDSQTLVGLTSTKEGH-LIICDNAN-GLHKVS-EDG-VENFL  152 (370)
Q Consensus        83 ~i~~d~~G~-l~v~~-~~g~I~~~~--~g~--~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~-gi~~~~-~~g-~~~~~  152 (370)
                      .++..+++. +|+.. ..+.+..++  ++.  ..........+. +++++++|+ ++++.... .+..++ .++ .....
T Consensus       167 ~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~  245 (426)
T d1hzua2         167 AIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLA-DGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV  245 (426)
T ss_dssp             EEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEE-EEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccE-eeeECCCCcEEEeeeecccceeeeecccccEEEEe
Confidence            345555553 33333 345565555  332  222234456688 999999997 55555443 455566 555 32222


Q ss_pred             eecCCcccccccceEE--cCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCC--------eEEEEecCCCCcc
Q 017520          153 SYVNGSKLRFANDVVE--ASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSN--------ITTLVADGFYFAN  222 (370)
Q Consensus       153 ~~~~g~~~~~~~~l~~--d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~--------~~~~~~~~~~~p~  222 (370)
                      .. ...+ .....+.+  +..+.++....+                .++.+..++....        ....+......+.
T Consensus       246 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~  307 (426)
T d1hzua2         246 DV-GKTP-HPGRGANFVHPKYGPVWSTSHL----------------GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSL  307 (426)
T ss_dssp             EC-SSCC-CCSCCEEEEETTTEEEEEEECT----------------TTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCC
T ss_pred             cc-CCcc-cccceeeeecCCCCceEEeccC----------------CCceEEEeeccccccccccceEeEEEecCCCcee
Confidence            21 1111 11112222  222233333221                3344545443321        2222333345688


Q ss_pred             ceEEccCCCEEEEEeC-------Cc-EEEEEeCCCCCC-ceeeecc--CCCCCCC---ceeECCCCC-EEEEEecCchhH
Q 017520          223 GVALSRDEDYVVVCES-------WK-CRKYWLKGERKG-KLETFAE--NLPGAPD---NINLAPDGT-FWIAIIKLDARR  287 (370)
Q Consensus       223 gi~~~~dg~~l~v~~~-------~~-l~~~~~~~~~~~-~~~~~~~--~~~g~p~---~i~~d~~G~-lwv~~~~~~~~~  287 (370)
                      .++++||++.+++...       .+ |.++|++..+.. +.....+  .++....   .+++++||+ +|+++...    
T Consensus       308 ~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~----  383 (426)
T d1hzua2         308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG----  383 (426)
T ss_dssp             CEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCC----
T ss_pred             EEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecC----
Confidence            9999999998887542       12 888998654322 1111100  1111122   246899996 88988654    


Q ss_pred             HHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEEEEeC
Q 017520          288 MKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIRNLVD  335 (370)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~~~~~  335 (370)
                                                ....+.|..+|. .++++..+..
T Consensus       384 --------------------------~~~~~~i~v~D~~T~k~~~~i~~  406 (426)
T d1hzua2         384 --------------------------KNDSSALVVVDDKTLKLKAVVKD  406 (426)
T ss_dssp             --------------------------TTSCCEEEEEETTTTEEEEEECC
T ss_pred             --------------------------CCCCCeEEEEECCCCeEEEEECC
Confidence                                      334456777774 5677776654

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.87  E-value=0.00018  Score=66.43  Aligned_cols=169  Identities=10%  Similarity=0.069  Sum_probs=96.1

Q ss_pred             eEEEEEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC-eEEEEeecC----CcccccccceEEcCC----CcEEE
Q 017520          108 TWVNWKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG-VENFLSYVN----GSKLRFANDVVEASD----GSLYF  176 (370)
Q Consensus       108 ~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g-~~~~~~~~~----g~~~~~~~~l~~d~~----G~l~v  176 (370)
                      +++++......|. +|++.+||+|||++.. +.|++++ .++ .+.+.....    .......-+|+++|+    +.+|+
T Consensus        18 ~~~~ia~~L~~P~-~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYv   96 (450)
T d1crua_          18 DKKVILSNLNKPH-ALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEE
T ss_pred             EEEEEECCCCCce-EEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEE
Confidence            5677777778999 9999999999999854 5588888 566 555443211    111234557899875    78998


Q ss_pred             EeCCCCCCCccceecccccCCCceEEEE--eCCCCeE---EEEe-----cCCCCccceEEccCCCEEEEEeCC-------
Q 017520          177 TVSSSKYLPHEYCLDILEGKPHGQLLKY--DPSSNIT---TLVA-----DGFYFANGVALSRDEDYVVVCESW-------  239 (370)
Q Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~l~~~--d~~t~~~---~~~~-----~~~~~p~gi~~~~dg~~l~v~~~~-------  239 (370)
                      +-.........     ........+.++  +......   +.+.     ....+...|++++||. ||++--.       
T Consensus        97 syt~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~-LYvs~Gd~~~~~~~  170 (450)
T d1crua_          97 SGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIGDQGRNQLA  170 (450)
T ss_dssp             EEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEECCTTTTSGG
T ss_pred             EEecCCCCCcc-----cccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCC-EEEEecCCCccccc
Confidence            73210000000     000001123333  3222211   1121     1223456799999997 8887431       


Q ss_pred             --------------------------c-EEEEEeCCCCCC--------ceeeeccCCCCCCCceeECCCCCEEEEEecCc
Q 017520          240 --------------------------K-CRKYWLKGERKG--------KLETFAENLPGAPDNINLAPDGTFWIAIIKLD  284 (370)
Q Consensus       240 --------------------------~-l~~~~~~~~~~~--------~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~  284 (370)
                                                + |.|++.++....        ..+.+...+ ..|-++++|++|+||++.++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~-RNp~g~~~~p~g~l~~~e~G~~  249 (450)
T d1crua_         171 YLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPN  249 (450)
T ss_dssp             GTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSS
T ss_pred             ccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEEEecc-ccccceeecccceeeecccccc
Confidence                                      3 888887654210        012232211 2366799999999999988643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.82  E-value=0.0071  Score=51.59  Aligned_cols=60  Identities=12%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS  144 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~  144 (370)
                      ++.+| +..|.+|+.||.|..|+  +++. ..+....+... ++++.+++.|+.+..++.+..++
T Consensus        18 c~~~~-~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2          18 CLQFE-DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEE-TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEEEEEETTCCEEEEE
T ss_pred             EEEEC-CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEEEEEeccccccccc
Confidence            45554 34677788999999999  6664 34444455667 99998876666666554455555

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=97.82  E-value=3.4e-05  Score=70.78  Aligned_cols=111  Identities=9%  Similarity=-0.004  Sum_probs=68.2

Q ss_pred             cCCCc-EEEEeCC-CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCcc--ceecccccCCC
Q 017520          126 TKEGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHE--YCLDILEGKPH  198 (370)
Q Consensus       126 d~~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~--~~~~~~~~~~~  198 (370)
                      ++||+ |||++.. ..|.+++ .++ .........+   ..+++++++++| ++|+.... ++....  ....+.+....
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~-~~~v~~~~dg~~~~~~~~~  155 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNA-EFVIPQPNDGTDFSLDNSY  155 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEE-CSCEESSCSSSCCCGGGEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEecc-CCcccccCccccccccccc
Confidence            36885 9999866 5788888 666 4433332222   478899999999 47887543 111100  00001111122


Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK  240 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~  240 (370)
                      ..+..+|+.+.++.....--..|.++++++||+++|++..+.
T Consensus       156 ~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         156 TMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT
T ss_pred             ceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCC
Confidence            345678888776543333335789999999999999998653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=97.80  E-value=0.003  Score=55.39  Aligned_cols=183  Identities=8%  Similarity=0.011  Sum_probs=96.5

Q ss_pred             CCCcceEEcCCC-cEEEEe-cCCeEEEEe--CCeEEEEEe-----cCCC--ceeceEEcCCCcEEEEeCCCceEEEc-CC
Q 017520           79 NHPEDASMDKNG-VIYTAT-RDGWIKRLQ--DGTWVNWKF-----IDSQ--TLVGLTSTKEGHLIICDNANGLHKVS-ED  146 (370)
Q Consensus        79 ~~P~~i~~d~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~-----~~~~--p~~gl~~d~~G~L~v~~~~~gi~~~~-~~  146 (370)
                      ..|.++++.++| .+|++. .+|.+..++  +++......     ....  +. .+..++++.+........++.++ .+
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~  243 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRIVWPVYSGKILQADISA  243 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceEEEecCCceEEEEEcCC
Confidence            457778887776 455544 788888888  443322211     1111  22 34445555433333334556555 22


Q ss_pred             C-eEEEEee--cC------CcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec
Q 017520          147 G-VENFLSY--VN------GSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD  216 (370)
Q Consensus       147 g-~~~~~~~--~~------g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~  216 (370)
                      + .......  ..      .........+++.++|. +|+......        ........+.+..+|..+++......
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--------~~~~~~~~~~v~~~d~~t~~~~~~~~  315 (373)
T d2madh_         244 AGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--------AWKLHAAAKEVTSVTGLVGQTSSQIS  315 (373)
T ss_pred             CeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--------eEEeecCCCeEEEEECCCCcEEEEec
Confidence            2 2211110  00      00011234467777774 444422100        11112244678899988877655544


Q ss_pred             CCCCccceEEccCCCEE-EEEeCCc--EEEEEeCCCCCCceeeeccCCCCCCCceeECCC
Q 017520          217 GFYFANGVALSRDEDYV-VVCESWK--CRKYWLKGERKGKLETFAENLPGAPDNINLAPD  273 (370)
Q Consensus       217 ~~~~p~gi~~~~dg~~l-~v~~~~~--l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~  273 (370)
                      ....+.++++++||+.+ |++....  |..||....+.  ...+ ......|..+++..+
T Consensus       316 ~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~--~~~~-~~~g~~P~~l~~~~~  372 (373)
T d2madh_         316 LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ--DQST-VELGSGPQVLSVMNE  372 (373)
T ss_pred             CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE--EEEE-CCCCCCCcEEEEecC
Confidence            55678899999999864 5565544  99999875432  2222 233446888877654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.68  E-value=0.0065  Score=52.51  Aligned_cols=101  Identities=19%  Similarity=0.141  Sum_probs=60.6

Q ss_pred             CceEEEEeCCCCeEEEEecC-------------CCCccceEEccCCCEEEEEeCC----------c-EEEEEeCCCCCCc
Q 017520          198 HGQLLKYDPSSNITTLVADG-------------FYFANGVALSRDEDYVVVCESW----------K-CRKYWLKGERKGK  253 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~~~~~-------------~~~p~gi~~~~dg~~l~v~~~~----------~-l~~~~~~~~~~~~  253 (370)
                      .+.++.++..++....+...             ......+++++|+..+|++...          + |..+|..+.+.  
T Consensus       215 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--  292 (355)
T d2bbkh_         215 TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--  292 (355)
T ss_dssp             TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--
T ss_pred             CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE--
Confidence            35667777665554432210             0123458999999999987532          1 77888665421  


Q ss_pred             eeeeccCCCCCCCceeECCCCC-EEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEECC-CCcEEE
Q 017520          254 LETFAENLPGAPDNINLAPDGT-FWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVAE-DGTIIR  331 (370)
Q Consensus       254 ~~~~~~~~~g~p~~i~~d~~G~-lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~~-~g~~~~  331 (370)
                      ...+.  .+..|..+++++||+ +++.+...                                 .+.|..+|. .|++++
T Consensus       293 ~~~~~--~~~~~~~~a~spDG~~~l~v~~~~---------------------------------d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         293 LAKFE--MGHEIDSINVSQDEKPLLYALSTG---------------------------------DKTLYIHDAESGEELR  337 (355)
T ss_dssp             EEEEE--EEEEECEEEECCSSSCEEEEEETT---------------------------------TTEEEEEETTTCCEEE
T ss_pred             EEEec--CCCCEEEEEEcCCCCeEEEEEECC---------------------------------CCEEEEEECCCCCEEE
Confidence            11111  123477899999996 44443332                                 145888884 799999


Q ss_pred             EEeC
Q 017520          332 NLVD  335 (370)
Q Consensus       332 ~~~~  335 (370)
                      ++..
T Consensus       338 ~i~~  341 (355)
T d2bbkh_         338 SVNQ  341 (355)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            8864

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=0.0009  Score=59.85  Aligned_cols=133  Identities=13%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             CcceEEcCCCcEEEEecCCeEEEEe--CCeEE-EEEe------cCCCceeceEEcCCCcEEEEeCC-C--ceEE-Ec-CC
Q 017520           81 PEDASMDKNGVIYTATRDGWIKRLQ--DGTWV-NWKF------IDSQTLVGLTSTKEGHLIICDNA-N--GLHK-VS-ED  146 (370)
Q Consensus        81 P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~-~~~~------~~~~p~~gl~~d~~G~L~v~~~~-~--gi~~-~~-~~  146 (370)
                      ..++++.++|.+.+++.||.|..|+  +++.. .+..      ...... +++++|+|+++++... +  ++++ ++ .+
T Consensus       187 ~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             EEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeeccccc
Confidence            5678888999888888999999999  55532 2221      223456 8999999987765433 2  3344 45 55


Q ss_pred             C--eEEEEeec---------CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          147 G--VENFLSYV---------NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       147 g--~~~~~~~~---------~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                      |  +..+....         .| ....++.+++.|+|++.++.+                 .++.|..+|.++++.....
T Consensus       266 g~~~~~l~~~~~~~~~~~~~~g-H~~~V~~l~fspd~~~l~S~s-----------------~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         266 GERIGSLSVPTHSSQASLGEFA-HSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             CCEEEEECBC--------CCBS-BSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             ceeeeeeccccccccceeeeec-ccCceeeeccCCCCCeeEEEC-----------------CCCEEEEEECCCCCEEEEE
Confidence            6  33332110         11 113578899999999887754                 4588999999988765544


Q ss_pred             cCCC-----CccceEEccCCCE
Q 017520          216 DGFY-----FANGVALSRDEDY  232 (370)
Q Consensus       216 ~~~~-----~p~gi~~~~dg~~  232 (370)
                      .+..     ....++++++++.
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCB
T ss_pred             CCcCCcccCCccEEEECCCCCE
Confidence            4322     2345778888874

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.49  E-value=0.0077  Score=52.89  Aligned_cols=96  Identities=5%  Similarity=-0.124  Sum_probs=57.5

Q ss_pred             eEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCC----------CceEEEc-CCC-eEEEEeecCC---cccc
Q 017520          100 WIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNA----------NGLHKVS-EDG-VENFLSYVNG---SKLR  161 (370)
Q Consensus       100 ~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~----------~gi~~~~-~~g-~~~~~~~~~g---~~~~  161 (370)
                      +|+.++  +++......... .. ++++.+||+ ||+++..          ..|..+| .++ .........+   ....
T Consensus        47 ~~~~~d~~~~~~~~~~~~~~-~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~  124 (368)
T d1mdah_          47 ENWVSCAGCGVTLGHSLGAF-LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP  124 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECT-TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred             eEEEEeCCCCcEEEEEeCCC-CC-cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccC
Confidence            466666  454433322222 33 688999995 8887632          1267777 555 3222222111   1123


Q ss_pred             cccceEEcCCC-cEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEE
Q 017520          162 FANDVVEASDG-SLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLV  214 (370)
Q Consensus       162 ~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~  214 (370)
                      .+..+++++|| .+|+++.                 ..+.+..+|..+++....
T Consensus       125 ~p~~~a~SpDGk~l~va~~-----------------~~~~v~~~d~~~~~~~~~  161 (368)
T d1mdah_         125 RVHIIGNCASSACLLFFLF-----------------GSSAAAGLSVPGASDDQL  161 (368)
T ss_dssp             CTTSEEECTTSSCEEEEEC-----------------SSSCEEEEEETTTEEEEE
T ss_pred             CccceEECCCCCEEEEEeC-----------------CCCeEEEEECCCCcEeEE
Confidence            57789999999 5888864                 246788999988876544

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=0.024  Score=47.09  Aligned_cols=218  Identities=14%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             CCcceEEcCCCcEEEEe-cCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEE
Q 017520           80 HPEDASMDKNGVIYTAT-RDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENF  151 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~-~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~  151 (370)
                      ...++++++++.+.+.. .++.+..++  ..+... +........ .+.+.++++..++....+ +..++ .++  ...+
T Consensus        61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  139 (317)
T d1vyhc1          61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  139 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             cEEEEeeecccccccccccccccccccccccccccccccccccce-eeeccCCCceEEeeccCcceeEeecccceeeeEE
Confidence            34567777777655443 555555555  222221 122233345 778888887655444444 44455 555  3333


Q ss_pred             EeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCC-C-----------
Q 017520          152 LSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGF-Y-----------  219 (370)
Q Consensus       152 ~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~-~-----------  219 (370)
                      ...     ...+..++++++|++.++.+                 .++.+..++..+++........ .           
T Consensus       140 ~~~-----~~~~~~~~~~~~~~~l~~~~-----------------~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  197 (317)
T d1vyhc1         140 TGH-----REWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAPES  197 (317)
T ss_dssp             ECC-----SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSC
T ss_pred             ccC-----CCcceeeecccCCCEEEEEe-----------------CCCeEEEEeeccceeeEEEecCCCCceEEEEeecc
Confidence            211     13456788889988766643                 2345666665544433222110 0           


Q ss_pred             ---------CccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecCchhHHH
Q 017520          220 ---------FANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKLDARRMK  289 (370)
Q Consensus       220 ---------~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~~~~~~~  289 (370)
                               .........++..++.+...+ |..++....+  ....+. ........+++.++|++.++....      
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d------  268 (317)
T d1vyhc1         198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM--CLMTLV-GHDNWVRGVLFHSGGKFILSCADD------  268 (317)
T ss_dssp             GGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE--EEEEEE-CCSSCEEEEEECSSSSCEEEEETT------
T ss_pred             ccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCc--EEEEEe-CCCCCEEEEEECCCCCEEEEEECC------
Confidence                     111122334455566666666 7788865432  112222 223334568888999766554332      


Q ss_pred             hhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCCCCCccccceeEEEE-CC-EEEEEeCCC
Q 017520          290 ILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDPTGQLMSFVTSGLQV-DN-HLYVISLTS  361 (370)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~~g~~~~~~t~~~~~-~g-~L~~gs~~~  361 (370)
                                                  +.|..+| .+++.+..+....+    .++.+... ++ .|..|+.++
T Consensus       269 ----------------------------g~i~iwd~~~~~~~~~~~~h~~----~V~~~~~s~~~~~l~s~s~Dg  311 (317)
T d1vyhc1         269 ----------------------------KTLRVWDYKNKRCMKTLNAHEH----FVTSLDFHKTAPYVVTGSVDQ  311 (317)
T ss_dssp             ----------------------------TEEEEECCTTSCCCEEEECCSS----CEEEEEECSSSSCEEEEETTS
T ss_pred             ----------------------------CeEEEEECCCCcEEEEEcCCCC----CEEEEEEcCCCCEEEEEeCCC
Confidence                                        3577778 46888888876443    45666554 33 455555543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.39  E-value=0.0078  Score=53.86  Aligned_cols=202  Identities=12%  Similarity=0.082  Sum_probs=112.2

Q ss_pred             CCCcCCCcceEEc--CCC-cEEEEe-cCCeEEEEe--CCeEEEEEe--cCCCceeceEEcCCC-cEEEEeCCC-------
Q 017520           75 EGSVNHPEDASMD--KNG-VIYTAT-RDGWIKRLQ--DGTWVNWKF--IDSQTLVGLTSTKEG-HLIICDNAN-------  138 (370)
Q Consensus        75 ~~~~~~P~~i~~d--~~G-~l~v~~-~~g~I~~~~--~g~~~~~~~--~~~~p~~gl~~d~~G-~L~v~~~~~-------  138 (370)
                      .|....|+--.-|  .|| +||+.+ .+++|.+++  +-+...+..  ....++ |++...++ ..||.....       
T Consensus        82 ~GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pn  160 (459)
T d1fwxa2          82 NGDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVN  160 (459)
T ss_dssp             CCCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSC
T ss_pred             CCCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCC
Confidence            4567788433333  255 688888 889999999  556544433  344678 88887666 467764221       


Q ss_pred             ------------c-eEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEEeCCCCCCC---------cccee---
Q 017520          139 ------------G-LHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLP---------HEYCL---  190 (370)
Q Consensus       139 ------------g-i~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~---------~~~~~---  190 (370)
                                  + +..+| .+. +...+. ..    ..+.+++++++|+ +|+++..++-+.         .++..   
T Consensus       161 dg~~l~d~~~y~~~~t~ID~~tm~V~~QV~-V~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n  235 (459)
T d1fwxa2         161 DGTNMEDVANYVNVFTAVDADKWEVAWQVL-VS----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFN  235 (459)
T ss_dssp             SSSSTTCGG-EEEEEEEEETTTTEEEEEEE-ES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEE
T ss_pred             CCccccchhhcceEEEEEecCCceEEEEee-eC----CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEec
Confidence                        1 22344 333 221111 12    2567899999996 666654332111         01110   


Q ss_pred             -----cccc-c--CCCceEEEEeCCCC---eEEEEecCCCCccceEEccCCCEEEEEeCCc--EEEEEeCCC------CC
Q 017520          191 -----DILE-G--KPHGQLLKYDPSSN---ITTLVADGFYFANGVALSRDEDYVVVCESWK--CRKYWLKGE------RK  251 (370)
Q Consensus       191 -----~~~~-~--~~~g~l~~~d~~t~---~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~--l~~~~~~~~------~~  251 (370)
                           .... .  ..-+++-.+|....   ....+..--..|.|+.++|||+.+|+++...  +.++|++.-      +.
T Consensus       236 ~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~  315 (459)
T d1fwxa2         236 IAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA  315 (459)
T ss_dssp             HHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred             hHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccC
Confidence                 0000 0  01134556665421   2222333446799999999999999998766  999997410      11


Q ss_pred             Cceeee-cc-CCCCCCCceeECCCCCEEEEEec
Q 017520          252 GKLETF-AE-NLPGAPDNINLAPDGTFWIAIIK  282 (370)
Q Consensus       252 ~~~~~~-~~-~~~g~p~~i~~d~~G~lwv~~~~  282 (370)
                      .-.... .+ .+.-.|---++|.+|+.|++..-
T Consensus       316 ~~~~~~~~e~elglgPLht~fd~~g~aytslfi  348 (459)
T d1fwxa2         316 DPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFL  348 (459)
T ss_dssp             -GGGGEEECCBCCSCEEEEEECTTSEEEEEETT
T ss_pred             CccccEEeecccCcCccccccCCCceEEEEeec
Confidence            111111 11 11113444678999999999754

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.022  Score=47.47  Aligned_cols=181  Identities=14%  Similarity=0.072  Sum_probs=96.0

Q ss_pred             CCcceEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCc-EEEEeCCCceE-EEcCCCeEEEEeec
Q 017520           80 HPEDASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGH-LIICDNANGLH-KVSEDGVENFLSYV  155 (370)
Q Consensus        80 ~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~-L~v~~~~~gi~-~~~~~g~~~~~~~~  155 (370)
                      .|..++..+++.+.+...++.+..++  +++..........   ..++.+++. +.++....+.. .++.......... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-  157 (287)
T d1pgua2          82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP---GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-  157 (287)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSC---EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-
T ss_pred             ceeeeeeccCCceEEEeecccceeeeccceeeeeeccccce---eeeeeccCcceeeeccccceeeeeeccccceeeee-
Confidence            57778888888888777777888888  4543333222222   234444554 55555544444 4443221111111 


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe-cC-CCCccceEEcc-----
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA-DG-FYFANGVALSR-----  228 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~-~~-~~~p~gi~~~~-----  228 (370)
                      .......+..++++++|...++..                 .++.|..||..++...... .. ....+.++++|     
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g~-----------------~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeccCCceeEEEeccCcccccccc-----------------ccccccceeecccccccccccccccccceeeeccccccc
Confidence            111123567899999997555432                 3478888998776553321 11 12234555554     


Q ss_pred             -----CCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCCEEEEEecC
Q 017520          229 -----DEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       229 -----dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                           ++..+..+...+ |+.|+++.+.. .... .....+....+++.+++.+..+...+
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~-~~~~-~~~h~~~V~~v~~~~~~~l~s~g~D~  279 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMK-IIKA-LNAHKDGVNNLLWETPSTLVSSGADA  279 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTC-CEEE-TTSSTTCEEEEEEEETTEEEEEETTS
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCe-EEEE-eCCCCCCeEEEEECCCCEEEEEECCC
Confidence                 445454445555 88888754311 1222 22223334567777777655544443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=97.32  E-value=0.0015  Score=51.49  Aligned_cols=149  Identities=15%  Similarity=0.057  Sum_probs=95.0

Q ss_pred             cccccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCe-------EEEEEecCC--CceeceEEcCCCc
Q 017520           62 LSATQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNWKFIDS--QTLVGLTSTKEGH  130 (370)
Q Consensus        62 ~~~~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-------~~~~~~~~~--~p~~gl~~d~~G~  130 (370)
                      +..+.+..+.++..+.+.+-.-|++.++|+||.... +.+|+=.  .-+       .+.+- .++  +-. -+.|||.|-
T Consensus        23 ~~dn~~~rA~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrIG-~ggWn~Fk-flffdP~G~   99 (235)
T d1tl2a_          23 KNDNWLARATLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKIG-NGGWNQFQ-FLFFDPNGY   99 (235)
T ss_dssp             TTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEEE-CSCGGGCS-EEEECTTSC
T ss_pred             ccccccchhhhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhcc-cCcccceE-EEEECCCce
Confidence            445566677888887788889999999999998874 5788754  111       12221 111  122 488999999


Q ss_pred             EEEEeCCCceEEEc-CCC--------eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceE
Q 017520          131 LIICDNANGLHKVS-EDG--------VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQL  201 (370)
Q Consensus       131 L~v~~~~~gi~~~~-~~g--------~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l  201 (370)
                      ||+... +.+++-. ++.        ...+ .   ...-+....|-+||+|.||-...                   +++
T Consensus       100 LyaVt~-~~LYr~~pPtn~~q~W~g~a~~v-G---~~gw~df~~lFFdP~G~LYaV~~-------------------~~l  155 (235)
T d1tl2a_         100 LYAVSK-DKLYKASPPQSDTDNWIARATEV-G---SGGWSGFKFLFFHPNGYLYAVHG-------------------QQF  155 (235)
T ss_dssp             EEEEET-TEEEEESCCCSTTCCHHHHSEEE-E---CSSGGGEEEEEECTTSCEEEEET-------------------TEE
T ss_pred             EEEecC-cceecCCcCcccchhhhhhhhhh-c---cCCcCceeEEEECCCceEEEEEC-------------------CcE
Confidence            999884 5788887 432        1221 1   11123445678899999998843                   357


Q ss_pred             EEEeCCCCe-------EEEEe-cCCCCccceEEccCCCEEEEEeC
Q 017520          202 LKYDPSSNI-------TTLVA-DGFYFANGVALSRDEDYVVVCES  238 (370)
Q Consensus       202 ~~~d~~t~~-------~~~~~-~~~~~p~gi~~~~dg~~l~v~~~  238 (370)
                      ++-.|.++.       .+.+- ..-..+..+.+++||+ ||....
T Consensus       156 ~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~-L~~v~~  199 (235)
T d1tl2a_         156 YKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT-LFGVQG  199 (235)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC-EEEEET
T ss_pred             EEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCc-EEEEeC
Confidence            777764332       12222 2334567899999999 565543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.05  Score=44.77  Aligned_cols=198  Identities=16%  Similarity=0.150  Sum_probs=102.2

Q ss_pred             ceEEcCCCc-EE-EEe--cCCeEEEEe--CCeEEEEEecCCCceeceEEcCCCcEEEEeC-CC-c--eEEEc-CCC-eEE
Q 017520           83 DASMDKNGV-IY-TAT--RDGWIKRLQ--DGTWVNWKFIDSQTLVGLTSTKEGHLIICDN-AN-G--LHKVS-EDG-VEN  150 (370)
Q Consensus        83 ~i~~d~~G~-l~-v~~--~~g~I~~~~--~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~-~~-g--i~~~~-~~g-~~~  150 (370)
                      +-+..+||. |. +..  ....++..+  .+..+......+... ...++++|..++... .. .  +.... ... ...
T Consensus        43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~  121 (269)
T d2hqsa1          43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ  121 (269)
T ss_dssp             EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred             eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccc-cceecCCCCeeeEeeecCCccceeeccccccccee
Confidence            346778884 33 333  233466666  445555555556666 778888887544322 22 1  12221 111 111


Q ss_pred             EEeecCCcccccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccceEEccC
Q 017520          151 FLSYVNGSKLRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANGVALSRD  229 (370)
Q Consensus       151 ~~~~~~g~~~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~d  229 (370)
                      ..   ...  ..........++. +++....               .....+++++.+++....+...........+++|
T Consensus       122 ~~---~~~--~~~~~~~~~~~~~~~~~~~~~---------------~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spd  181 (269)
T d2hqsa1         122 VT---DGR--SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVSSD  181 (269)
T ss_dssp             CC---CCS--SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEEECTT
T ss_pred             ee---ecc--ccccccccccccccceecccc---------------cCCceEeeeecccccceeeecccccccccccccc
Confidence            10   110  1111223344443 3333211               1334688888887766555444333445678999


Q ss_pred             CCEEEEEeCCc----EEEEEeCCCCCCceeeeccCCCCCCCceeECCCCC-E-EEEEecCchhHHHhhhcchhHHHHHHh
Q 017520          230 EDYVVVCESWK----CRKYWLKGERKGKLETFAENLPGAPDNINLAPDGT-F-WIAIIKLDARRMKILNSSKLIKHVLAA  303 (370)
Q Consensus       230 g~~l~v~~~~~----l~~~~~~~~~~~~~~~~~~~~~g~p~~i~~d~~G~-l-wv~~~~~~~~~~~~~~~~~~~~~~~~~  303 (370)
                      ++.++.....+    ++.++.++.   ..+...  ..+.-....+++||+ | |++...+                    
T Consensus       182 g~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~--~~~~~~~p~~SPDG~~i~f~s~~~~--------------------  236 (269)
T d2hqsa1         182 GKFMVMVSSNGGQQHIAKQDLATG---GVQVLS--STFLDETPSLAPNGTMVIYSSSQGM--------------------  236 (269)
T ss_dssp             SSEEEEEEECSSCEEEEEEETTTC---CEEECC--CSSSCEEEEECTTSSEEEEEEEETT--------------------
T ss_pred             cceeEEEeecCCceeeeEeecccc---cceEee--cCccccceEECCCCCEEEEEEcCCC--------------------
Confidence            99777765543    566664432   222221  222233467899996 3 4443332                    


Q ss_pred             CCccccccccCCCceEEEEECCCCcEEEEEeCCCCC
Q 017520          304 YPKLFSQFITLGGGAHLIHVAEDGTIIRNLVDPTGQ  339 (370)
Q Consensus       304 ~~~~~~~~~~~~~~g~v~~~~~~g~~~~~~~~~~g~  339 (370)
                                   ...++.++.+|+..+.+....|.
T Consensus       237 -------------~~~l~~~~~dg~~~~~lt~~~g~  259 (269)
T d2hqsa1         237 -------------GSVLNLVSTDGRFKARLPATDGQ  259 (269)
T ss_dssp             -------------EEEEEEEETTSCCEEECCCSSSE
T ss_pred             -------------CcEEEEEECCCCCEEEEeCCCCc
Confidence                         24578888888877776665553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.08  E-value=0.0095  Score=49.61  Aligned_cols=52  Identities=12%  Similarity=-0.053  Sum_probs=31.2

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCcEEEEEeCCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGE  249 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~  249 (370)
                      ....|+.+|.+++..+.+... .......+++||+.|++...+.|+++++++.
T Consensus       212 ~~~~l~~~d~~g~~~~~lt~~-~~~~~~~~SpDG~~I~f~~~~~l~~~d~~~g  263 (281)
T d1k32a2         212 GFGQIYSTDLDGKDLRKHTSF-TDYYPRHLNTDGRRILFSKGGSIYIFNPDTE  263 (281)
T ss_dssp             SSCEEEEEETTSCSCEECCCC-CSSCEEEEEESSSCEEEEETTEEEEECTTTC
T ss_pred             cccceEEEeCCCCceEEeecC-CCcccccCcCCCCEEEEEeCCEEEEEECCCC
Confidence            344677777776666554322 2223345778887777755444888887654

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.89  E-value=0.093  Score=45.76  Aligned_cols=180  Identities=10%  Similarity=0.136  Sum_probs=93.8

Q ss_pred             cCCCcEEEEe-cCCeEEEEe-CCeEEEEEecCCCceeceE------EcCCC-cEEEEeCC-C---c--eEEEcC-CC-eE
Q 017520           87 DKNGVIYTAT-RDGWIKRLQ-DGTWVNWKFIDSQTLVGLT------STKEG-HLIICDNA-N---G--LHKVSE-DG-VE  149 (370)
Q Consensus        87 d~~G~l~v~~-~~g~I~~~~-~g~~~~~~~~~~~p~~gl~------~d~~G-~L~v~~~~-~---g--i~~~~~-~g-~~  149 (370)
                      +++..|.+|+ .+++|+.++ +|+...+.. .++++ .+-      +..+. .+.++... .   .  ++.+++ ++ +.
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3455677766 666799999 887665543 45554 332      32222 23344322 1   2  455553 34 44


Q ss_pred             EEEeecCC--cccccccceEE--cC-CCcEEEEeCCCCCCCccceecccccCCCceEEE--EeC-CCCeEEE----EecC
Q 017520          150 NFLSYVNG--SKLRFANDVVE--AS-DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLK--YDP-SSNITTL----VADG  217 (370)
Q Consensus       150 ~~~~~~~g--~~~~~~~~l~~--d~-~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~--~d~-~t~~~~~----~~~~  217 (370)
                      .+......  .....+.+++.  ++ +|.+|+-...                ..|.+..  +.. ..+.+..    .+..
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            33221100  11235778877  55 4665544321                2344433  322 2222211    1223


Q ss_pred             CCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeec----cCCCCCCCceeE--CCCCC-EEEEEecCc
Q 017520          218 FYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFA----ENLPGAPDNINL--APDGT-FWIAIIKLD  284 (370)
Q Consensus       218 ~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~----~~~~g~p~~i~~--d~~G~-lwv~~~~~~  284 (370)
                      ...+.|+++|.+.+.||+++... +|+|+.+.........+.    .++.+-|.||++  .++|. +||++.++.
T Consensus       179 ~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~  253 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGN  253 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCC
Confidence            34678999999999999999877 999987643222222111    123344667764  33443 788877763

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.85  E-value=0.13  Score=48.10  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=74.9

Q ss_pred             cccCceEecCCCcCCC--cceEEcCCCcEEEEec-CCeEEEEe--C-CeEEEEEecC------------CCceeceEEcC
Q 017520           66 QLQDFIKVGEGSVNHP--EDASMDKNGVIYTATR-DGWIKRLQ--D-GTWVNWKFID------------SQTLVGLTSTK  127 (370)
Q Consensus        66 ~l~~~~~~~~~~~~~P--~~i~~d~~G~l~v~~~-~g~I~~~~--~-g~~~~~~~~~------------~~p~~gl~~d~  127 (370)
                      .|.-++....+...+.  .-|.+  +|.||+++. ++.|+.++  + |+...-....            .... |+++. 
T Consensus        39 ~L~~aW~~~~g~~~~~~~tP~v~--~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r-g~a~~-  114 (571)
T d2ad6a1          39 NVKAAWSFSTGVLNGHEGAPLVI--GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-  114 (571)
T ss_dssp             GCEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-
T ss_pred             hceEEEEEeCCCCCCcccCCEEE--CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC-cceee-
Confidence            4444555554432221  11444  699999985 68899999  3 7755422111            0113 56775 


Q ss_pred             CCcEEEEeCCCceEEEc-CCC-eEEEEee---cCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEE
Q 017520          128 EGHLIICDNANGLHKVS-EDG-VENFLSY---VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLL  202 (370)
Q Consensus       128 ~G~L~v~~~~~gi~~~~-~~g-~~~~~~~---~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~  202 (370)
                      ++++|+++....++.+| ++| ...-...   ..+.....+ -+..  ++.+++..+...            ....+.|+
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~-p~v~--~~~vivg~~~~~------------~~~~G~v~  179 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQA-PFVA--KDTVLMGCSGAE------------LGVRGAVN  179 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSC-CEEE--TTEEEEECBCGG------------GTCCCEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeec-CeEe--CCeEEEeecccc------------ccccCcEE
Confidence            68999998777899999 788 3322211   111111111 1222  478888865422            22457899


Q ss_pred             EEeCCCCeEEE
Q 017520          203 KYDPSSNITTL  213 (370)
Q Consensus       203 ~~d~~t~~~~~  213 (370)
                      .+|..|++..-
T Consensus       180 a~D~~TG~~~W  190 (571)
T d2ad6a1         180 AFDLKTGELKW  190 (571)
T ss_dssp             EEETTTCCEEE
T ss_pred             EEECCCCcEEE
Confidence            99998887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.024  Score=49.99  Aligned_cols=115  Identities=11%  Similarity=0.046  Sum_probs=69.2

Q ss_pred             ceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEee--cCCcccccccceEEcCCCcEEEEeCCCCCCCccceeccc
Q 017520          119 TLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSY--VNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       119 p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~--~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~  193 (370)
                      .. ++++.++|.|..+..++.|..++ .++  +..+...  ..+ ....++.++++|||++.++-+.             
T Consensus       187 ~~-~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~sgs~-------------  251 (393)
T d1sq9a_         187 AT-SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMIN-NSNSIRSVKFSPQGSLLAIAHD-------------  251 (393)
T ss_dssp             CC-EEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---C-CCCCEEEEEECSSTTEEEEEEE-------------
T ss_pred             EE-EEEECCCCEEEEEeCCCcEEEEeeccccccccccccccccc-ccceEEEcccccccceeeeecC-------------
Confidence            45 78888988665555444466666 555  3332211  111 1236788999999987777431             


Q ss_pred             ccCCCceEEEEeCCCCeEEEEec--------------CCCCccceEEccCCCEEEEEeCCc-EEEEEeCCC
Q 017520          194 EGKPHGQLLKYDPSSNITTLVAD--------------GFYFANGVALSRDEDYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       194 ~~~~~g~l~~~d~~t~~~~~~~~--------------~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~  249 (370)
                       ....+.+..||.++++......              .-...+.++++||++.|+-+..++ |..||++..
T Consensus       252 -D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g  321 (393)
T d1sq9a_         252 -SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK  321 (393)
T ss_dssp             -ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred             -CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC
Confidence             0012346667887765433221              112246689999999777676666 888887653

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.11  Score=43.34  Aligned_cols=140  Identities=11%  Similarity=0.030  Sum_probs=73.1

Q ss_pred             eEEcCCC-cEEEEecCCeEEEEe--CCeE-EEEEecCCCceeceEEcCCCcE-EEEeCCCceEEEc-CCC--eEEEEeec
Q 017520           84 ASMDKNG-VIYTATRDGWIKRLQ--DGTW-VNWKFIDSQTLVGLTSTKEGHL-IICDNANGLHKVS-EDG--VENFLSYV  155 (370)
Q Consensus        84 i~~d~~G-~l~v~~~~g~I~~~~--~g~~-~~~~~~~~~p~~gl~~d~~G~L-~v~~~~~gi~~~~-~~g--~~~~~~~~  155 (370)
                      .....+| .+.+++.+|.|..++  .++. ..+........ ++.++  +++ +.+...+.|..++ .+.  ...+... 
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-  256 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP-  256 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST-
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee-EEecC--CCEEEEEcCCCEEEEEeccccccccccccc-
Confidence            3333344 466677889999998  4443 33332233334 56554  444 4444444566666 333  2222111 


Q ss_pred             CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEE-EEecC-----CCCccceEEccC
Q 017520          156 NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITT-LVADG-----FYFANGVALSRD  229 (370)
Q Consensus       156 ~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~-~~~~~-----~~~p~gi~~~~d  229 (370)
                      .. ....+  .++..++++.++.+                 .++.|..||..+++.. .+...     ......++++++
T Consensus       257 ~~-~~~~~--~~~~~~~~~~~s~s-----------------~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         257 NK-HQSAV--TCLQFNKNFVITSS-----------------DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             TS-CSSCE--EEEEECSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             ce-eeece--eecccCCCeeEEEc-----------------CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            11 11122  33444566666543                 4578999998877653 22211     112456889999


Q ss_pred             CCEEEEEeCCc-----EEEEEeC
Q 017520          230 EDYVVVCESWK-----CRKYWLK  247 (370)
Q Consensus       230 g~~l~v~~~~~-----l~~~~~~  247 (370)
                      +..+..+...+     |+.+|.+
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCC
Confidence            87555554433     6666654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.21  Score=45.27  Aligned_cols=146  Identities=9%  Similarity=0.021  Sum_probs=74.3

Q ss_pred             eEEcCCCcEEEEeCC--C---ceEEEc-CCC-eEEEEeecCCcccc-cccceEEcCCCc-EEEEeCCCCCCCccceeccc
Q 017520          123 LTSTKEGHLIICDNA--N---GLHKVS-EDG-VENFLSYVNGSKLR-FANDVVEASDGS-LYFTVSSSKYLPHEYCLDIL  193 (370)
Q Consensus       123 l~~d~~G~L~v~~~~--~---gi~~~~-~~g-~~~~~~~~~g~~~~-~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~  193 (370)
                      +...+++++++....  +   .++.++ .+| .+.+.......=.. ......+.+||+ +++...+             
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~s-------------  326 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-------------  326 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-------------
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEee-------------
Confidence            445677777665322  1   366666 567 55443322211001 122457788884 3332111             


Q ss_pred             ccCCCceEEEEeC-------CCCeEEEEecCCCCc-cceEEccCCCEEEEEeCCc------EEEEEeCCCCCCceeeecc
Q 017520          194 EGKPHGQLLKYDP-------SSNITTLVADGFYFA-NGVALSRDEDYVVVCESWK------CRKYWLKGERKGKLETFAE  259 (370)
Q Consensus       194 ~~~~~g~l~~~d~-------~t~~~~~~~~~~~~p-~gi~~~~dg~~l~v~~~~~------l~~~~~~~~~~~~~~~~~~  259 (370)
                      +..+.+.++.++.       .++..+.+..+-... .-++++.+++.+|++.+..      |+++++++....  +++..
T Consensus       327 e~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~  404 (465)
T d1xfda1         327 PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSC  404 (465)
T ss_dssp             CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSST
T ss_pred             eecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeecc
Confidence            1113345565532       222222222222222 2357899999999876532      888888775322  11110


Q ss_pred             --CCCCCCCceeECCCCCEEEEEecC
Q 017520          260 --NLPGAPDNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       260 --~~~g~p~~i~~d~~G~lwv~~~~~  283 (370)
                        .....-..+.++++|.+++-...+
T Consensus       405 ~~~~~~~~~~~~~S~~~~y~v~~~s~  430 (465)
T d1xfda1         405 DLVENCTYFSASFSHSMDFFLLKCEG  430 (465)
T ss_dssp             TSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred             ccCCCCCEEEEEECCCCCEEEEEeec
Confidence              111123467899999999987765

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.06  E-value=0.043  Score=49.61  Aligned_cols=117  Identities=12%  Similarity=-0.047  Sum_probs=71.4

Q ss_pred             ceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEEeecC-CcccccccceEEcCCCc-EEEE-eCCCCCCCccceecccccC
Q 017520          122 GLTSTKEGHLIICDNANGLHKVS-EDG-VENFLSYVN-GSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGK  196 (370)
Q Consensus       122 gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~-g~~~~~~~~l~~d~~G~-l~v~-d~~~~~~~~~~~~~~~~~~  196 (370)
                      .+..-+++.++..+ +++++.++ .+| .+.+..... ......+.++.++|||+ |.++ +..          .+....
T Consensus        21 ~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~----------~~~r~s   89 (470)
T d2bgra1          21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV----------KQWRHS   89 (470)
T ss_dssp             CCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE----------ECSSSC
T ss_pred             CCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc----------ceeeec
Confidence            56666777755444 45788888 666 444433211 11123567889999996 4333 211          111122


Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCcEEEEEeCCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWKCRKYWLKGE  249 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~l~~~~~~~~  249 (370)
                      ..+.++.||.++++...+...-.....+.++|||+.+.+.....++.++..+.
T Consensus        90 ~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g  142 (470)
T d2bgra1          90 YTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNL  142 (470)
T ss_dssp             EEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTS
T ss_pred             cCceEEEEECCCCcccccccCCccccccccccCcceeeEeecccceEEECCCC
Confidence            34678999999887765443333345678999999877765555888877654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.03  E-value=0.14  Score=45.56  Aligned_cols=106  Identities=9%  Similarity=0.019  Sum_probs=62.0

Q ss_pred             CCc-EEEEeCC-CceEEEc-CCC-eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCc--cceecccc-cCCCc
Q 017520          128 EGH-LIICDNA-NGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPH--EYCLDILE-GKPHG  199 (370)
Q Consensus       128 ~G~-L~v~~~~-~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~--~~~~~~~~-~~~~g  199 (370)
                      ||+ |||.+.. .+|.+++ ++- ...+.....+   ..++++....++ +.||...+ ++...  +....+-+ ....+
T Consensus        98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~-e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNG-EDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEE-CSCEESSCSSSSTTCGG-EEE
T ss_pred             ceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccC-ccccccCCCCccccchhhcce
Confidence            675 8998865 5799999 444 4334333222   356777777665 46776432 11110  00000000 11234


Q ss_pred             eEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEe
Q 017520          200 QLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCE  237 (370)
Q Consensus       200 ~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~  237 (370)
                      .+..+|.++.++.....-...+..+++++||+++|++.
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            56789998877654433334788999999999999985

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.03  E-value=0.58  Score=43.26  Aligned_cols=41  Identities=10%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             CCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEE
Q 017520          315 GGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI  357 (370)
Q Consensus       315 ~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~g  357 (370)
                      ...+.+..||. +|+++++|..+.+....++ ++ +.+|+-||.
T Consensus       476 ~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~-ty-~~dGkqyv~  517 (560)
T d1kv9a2         476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPM-TF-ELAGRQYVA  517 (560)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCE-EE-EETTEEEEE
T ss_pred             CCCCcEEEEECCCCcEeEEEECCCCccccCE-EE-EECCEEEEE
Confidence            44577999995 7999999999876543333 33 467887775

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.85  E-value=0.36  Score=39.46  Aligned_cols=137  Identities=12%  Similarity=0.073  Sum_probs=73.7

Q ss_pred             ceEEcCCCcEEEEecCCeEEEEeCCeEEEEEecCCCceeceEEcCCCcEEEEeCCCceEEEc-CCC--eEEEEeecCCcc
Q 017520           83 DASMDKNGVIYTATRDGWIKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNANGLHKVS-EDG--VENFLSYVNGSK  159 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~I~~~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g--~~~~~~~~~g~~  159 (370)
                      ++++.+++.++.+..++.|..++...    ......|. .+.+.+++.+++.....++..++ .++  ...+..  .   
T Consensus        51 ~~~~~~~~~~~s~s~D~~v~~w~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---  120 (287)
T d1pgua2          51 SLDNSKAQEYSSISWDDTLKVNGITK----HEFGSQPK-VASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--N---  120 (287)
T ss_dssp             EEECCSTTCCEEEETTTEEEETTEEE----EECSSCEE-EEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--S---
T ss_pred             EEEecCCCeEEEEeeccccccccccc----ccccccee-eeeeccCCceEEEeecccceeeeccceeeeeeccc--c---
Confidence            34444445555555555444333000    01223456 77777888777776666777777 445  322211  1   


Q ss_pred             cccccceEEcCCCc-EEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-CC-CCccceEEccCCCEEEEE
Q 017520          160 LRFANDVVEASDGS-LYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-GF-YFANGVALSRDEDYVVVC  236 (370)
Q Consensus       160 ~~~~~~l~~d~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~~-~~p~gi~~~~dg~~l~v~  236 (370)
                         ....++.+++. +.++..                 ..+.+..|+..+.+...... .. .....++++++++.++++
T Consensus       121 ---~~~~~~~~~~~~~~v~~~-----------------~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g  180 (287)
T d1pgua2         121 ---SPGSAVSLSQNYVAVGLE-----------------EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG  180 (287)
T ss_dssp             ---SCEEEEEECSSEEEEEET-----------------TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEE
T ss_pred             ---ceeeeeeccCcceeeecc-----------------ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccc
Confidence               11234455554 444432                 22356667654333222211 12 234678999999988888


Q ss_pred             eCCc-EEEEEeCCC
Q 017520          237 ESWK-CRKYWLKGE  249 (370)
Q Consensus       237 ~~~~-l~~~~~~~~  249 (370)
                      ...+ |..|++...
T Consensus       181 ~~dg~i~i~d~~~~  194 (287)
T d1pgua2         181 DVMGKILLYDLQSR  194 (287)
T ss_dssp             ETTSCEEEEETTTT
T ss_pred             cccccccceeeccc
Confidence            8877 888987643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.76  E-value=0.76  Score=42.55  Aligned_cols=43  Identities=23%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             CCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEEe
Q 017520          314 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVIS  358 (370)
Q Consensus       314 ~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~gs  358 (370)
                      ....+.+..||. +|++++.+..+.+....+++.  +.||+.||+-
T Consensus       481 G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty--~~dGkqYi~v  524 (571)
T d2ad6a1         481 ATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTY--SFKGKQYIGS  524 (571)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEEE
T ss_pred             ECCCCeEEEEECCCCcEEEEEECCCCceecceEE--EECCEEEEEE
Confidence            345578999995 699999999877653333332  4589999843

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.41  Score=39.36  Aligned_cols=64  Identities=11%  Similarity=-0.017  Sum_probs=38.5

Q ss_pred             CCcceEEcCCCc-EEEEecCCeEEEEe--CC-eE---EEEEecCCCceeceEEcCCCc-EEE-EeCCCceEEEc
Q 017520           80 HPEDASMDKNGV-IYTATRDGWIKRLQ--DG-TW---VNWKFIDSQTLVGLTSTKEGH-LII-CDNANGLHKVS  144 (370)
Q Consensus        80 ~P~~i~~d~~G~-l~v~~~~g~I~~~~--~g-~~---~~~~~~~~~p~~gl~~d~~G~-L~v-~~~~~gi~~~~  144 (370)
                      +-.+|++.++|. |.+++.||.|..|+  .+ ..   .......+... ++++.+++. +.+ +...+.+..++
T Consensus        13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w~   85 (342)
T d1yfqa_          13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVD   85 (342)
T ss_dssp             CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeeee
Confidence            346789998876 55667899999988  32 22   22223344556 899887653 433 34333455555

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.74  E-value=0.14  Score=47.59  Aligned_cols=110  Identities=14%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecC-----------C-CceeceEEcCCCcEEEEeCCCceEEEc-CCC-eEEEE
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID-----------S-QTLVGLTSTKEGHLIICDNANGLHKVS-EDG-VENFL  152 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~-----------~-~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g-~~~~~  152 (370)
                      +|.||+++.++.|+.+|  +|+...-....           . ... +++.. ++.+|+++....++.+| .+| ...-.
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v~~~~~~g~l~Alda~tG~~~w~~  143 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccccccc-Cccee-CCeEEEEeCCCEEEEEECCCCcEEecc
Confidence            68999999999999999  78765432111           0 112 44444 56899988777899999 688 33222


Q ss_pred             eecCCcccccccc-eEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEE
Q 017520          153 SYVNGSKLRFAND-VVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTL  213 (370)
Q Consensus       153 ~~~~g~~~~~~~~-l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~  213 (370)
                      ............. -.+ -+|.+++.....+.            ...|.|..+|..|++..-
T Consensus       144 ~~~~~~~~~~~~~~p~v-~~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~W  192 (560)
T d1kv9a2         144 QTTDPAKPYSITGAPRV-VKGKVIIGNGGAEY------------GVRGFVSAYDADTGKLAW  192 (560)
T ss_dssp             ECSCTTSSCBCCSCCEE-ETTEEEECCBCTTT------------CCBCEEEEEETTTCCEEE
T ss_pred             CccCcccceeeeeeeee-ecCcccccccceec------------cccceEEEEECCCceEEe
Confidence            1111110011111 111 25677776543221            234678888888887643

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.45  Score=39.53  Aligned_cols=134  Identities=10%  Similarity=0.116  Sum_probs=74.9

Q ss_pred             CCc-EEEEecCCeEEEEe--CCeEEE-EEecCCCceeceEEcCCCcEEEEeCC-CceEEEc-CCC--eEEEEeecCCccc
Q 017520           89 NGV-IYTATRDGWIKRLQ--DGTWVN-WKFIDSQTLVGLTSTKEGHLIICDNA-NGLHKVS-EDG--VENFLSYVNGSKL  160 (370)
Q Consensus        89 ~G~-l~v~~~~g~I~~~~--~g~~~~-~~~~~~~p~~gl~~d~~G~L~v~~~~-~gi~~~~-~~g--~~~~~~~~~g~~~  160 (370)
                      +|+ +..+..++.|..++  +++... ......... .+.+++++...+.... +.+..++ +++  ...+    .+. .
T Consensus       170 ~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----~~h-~  243 (355)
T d1nexb2         170 HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTL----QGH-T  243 (355)
T ss_dssp             ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE----CCC-S
T ss_pred             ccceeeeecccceeeeeecccccceeeeeccccccc-cccccccceeeecccccceEEeeecccccccccc----ccc-c
Confidence            444 44556788888888  454332 222333455 7888888875554434 4455566 556  3322    111 1


Q ss_pred             ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecCCCCccc-eEEccCCCEEEEEeCC
Q 017520          161 RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADGFYFANG-VALSRDEDYVVVCESW  239 (370)
Q Consensus       161 ~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p~g-i~~~~dg~~l~v~~~~  239 (370)
                      ..+..++++  ++..++.+                 .++.|..+|..+......... ..... .+++++++ ++++...
T Consensus       244 ~~v~~~~~~--~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~l~~g~d  302 (355)
T d1nexb2         244 ALVGLLRLS--DKFLVSAA-----------------ADGSIRGWDANDYSRKFSYHH-TNLSAITTFYVSDN-ILVSGSE  302 (355)
T ss_dssp             SCCCEEEEC--SSEEEEEC-----------------TTSEEEEEETTTCCEEEEEEC-TTCCCCCEEEECSS-EEEEEET
T ss_pred             ccccccccc--cceeeeee-----------------cccccccccccccceeccccc-CCceEEEEEcCCCC-EEEEEeC
Confidence            245666765  44444432                 357888999876654433222 22333 35677777 5555555


Q ss_pred             c-EEEEEeCCC
Q 017520          240 K-CRKYWLKGE  249 (370)
Q Consensus       240 ~-l~~~~~~~~  249 (370)
                      + |..||++..
T Consensus       303 ~~i~vwd~~tg  313 (355)
T d1nexb2         303 NQFNIYNLRSG  313 (355)
T ss_dssp             TEEEEEETTTC
T ss_pred             CEEEEEECCCC
Confidence            5 899998654

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=95.71  E-value=0.015  Score=45.68  Aligned_cols=111  Identities=14%  Similarity=0.031  Sum_probs=71.5

Q ss_pred             ccccCceEecCCCcCCCcceEEcCCCcEEEEecCCeEEEEe--CCe-------EEEEEe-cCCCceeceEEcCCCcEEEE
Q 017520           65 TQLQDFIKVGEGSVNHPEDASMDKNGVIYTATRDGWIKRLQ--DGT-------WVNWKF-IDSQTLVGLTSTKEGHLIIC  134 (370)
Q Consensus        65 ~~l~~~~~~~~~~~~~P~~i~~d~~G~l~v~~~~g~I~~~~--~g~-------~~~~~~-~~~~p~~gl~~d~~G~L~v~  134 (370)
                      .....+++|..+..+.=.-+.+|+.|.||+.+ .+.|+|-.  +..       ...+-. ..+.-. -|.|||+|.||..
T Consensus        73 ~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~LYaV  150 (235)
T d1tl2a_          73 NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYLYAV  150 (235)
T ss_dssp             CHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCEEEE
T ss_pred             HHHHhhhhcccCcccceEEEEECCCceEEEec-CcceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceEEEE
Confidence            34567788888877777789999999999988 47899986  322       222211 112233 6899999999998


Q ss_pred             eCCCceEEEc-CCC--eEEE--EeecCCcccccccceEEcCCCcEEEEe
Q 017520          135 DNANGLHKVS-EDG--VENF--LSYVNGSKLRFANDVVEASDGSLYFTV  178 (370)
Q Consensus       135 ~~~~gi~~~~-~~g--~~~~--~~~~~g~~~~~~~~l~~d~~G~l~v~d  178 (370)
                      .. .++++-. +.+  -..+  ........-..++.+.+.++|+||-..
T Consensus       151 ~~-~~l~k~~pP~~~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         151 HG-QQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             ET-TEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred             EC-CcEEEcCCCCCCCchhhhhhhhhccCcccCceEEEECCCCcEEEEe
Confidence            64 4688876 332  1111  011111112355688999999999773

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.54  Score=38.75  Aligned_cols=136  Identities=14%  Similarity=0.060  Sum_probs=73.3

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCCc-EEEEEeCCCCCCceeeeccCCCCCCC-ceeECCCC
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESWK-CRKYWLKGERKGKLETFAENLPGAPD-NINLAPDG  274 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~~-l~~~~~~~~~~~~~~~~~~~~~g~p~-~i~~d~~G  274 (370)
                      .++.|..+|..+++........ ...-.+++++++.++.+...+ |..|+....+.  ...+. ....... -.++..++
T Consensus       195 ~dg~i~~~d~~~~~~~~~~~~~-~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~~-~~~~~~~~~~~~~~~~  270 (342)
T d2ovrb2         195 LDTSIRVWDVETGNCIHTLTGH-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQC--LQTLQ-GPNKHQSAVTCLQFNK  270 (342)
T ss_dssp             TTSCEEEEETTTCCEEEEECCC-CSCEEEEEEETTEEEEEETTSCEEEEETTTCCE--EEEEC-STTSCSSCEEEEEECS
T ss_pred             CCCeEEEeecccceeeeEeccc-ccceeEEecCCCEEEEEcCCCEEEEEecccccc--ccccc-ccceeeeceeecccCC
Confidence            3577888888766543332221 122234556667677777666 88888765321  22221 1111111 23344556


Q ss_pred             CEEEEEecCchhHHHhhhcchhHHHHHHhCCccccccccCCCceEEEEEC-CCCcEEEEEeCC-CCCccccceeEEEECC
Q 017520          275 TFWIAIIKLDARRMKILNSSKLIKHVLAAYPKLFSQFITLGGGAHLIHVA-EDGTIIRNLVDP-TGQLMSFVTSGLQVDN  352 (370)
Q Consensus       275 ~lwv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~~~-~~g~~~~~~~~~-~g~~~~~~t~~~~~~g  352 (370)
                      ++.++....                                  |.|..+| ..|+.++.+... .+.....++.+....+
T Consensus       271 ~~~~s~s~D----------------------------------g~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         271 NFVITSSDD----------------------------------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             SEEEEEETT----------------------------------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             CeeEEEcCC----------------------------------CEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCC
Confidence            666554432                                  4577778 468888887543 2233345667766654


Q ss_pred             E--EEEEeCCCC---eEEEEeCC
Q 017520          353 H--LYVISLTSN---FIGKVQLS  370 (370)
Q Consensus       353 ~--L~~gs~~~~---~i~~~~~~  370 (370)
                      .  |-.|+.++.   +|.+.++|
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCC
Confidence            3  334444442   57776654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.28  E-value=0.29  Score=45.60  Aligned_cols=132  Identities=12%  Similarity=0.094  Sum_probs=74.5

Q ss_pred             cccCceEecCCCcCCCcc--eEEcCCCcEEEEecCCeEEEEe--CCeEEEEEecC-----------C-CceeceEEcCCC
Q 017520           66 QLQDFIKVGEGSVNHPED--ASMDKNGVIYTATRDGWIKRLQ--DGTWVNWKFID-----------S-QTLVGLTSTKEG  129 (370)
Q Consensus        66 ~l~~~~~~~~~~~~~P~~--i~~d~~G~l~v~~~~g~I~~~~--~g~~~~~~~~~-----------~-~p~~gl~~d~~G  129 (370)
                      .|.-++.+..+...+.++  |.+  +|.||+++.++.|+.+|  +|+...-....           . ... ++++. ++
T Consensus        54 ~L~~aW~~~~~~~~~~~stPiv~--~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~  129 (573)
T d1kb0a2          54 DLGLAWSYNLESTRGVEATPVVV--DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNR-GVALW-KG  129 (573)
T ss_dssp             GEEEEEEEECCCCSCCCCCCEEE--TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCC-CCEEE-TT
T ss_pred             cceEEEEEECCCCCCcEECCEEE--CCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccc-cceEE-CC
Confidence            344455554432222222  444  68999999999999999  78865432111           0 112 55664 67


Q ss_pred             cEEEEeCCCceEEEc-CCC-eEEEEeecCCccc-ccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeC
Q 017520          130 HLIICDNANGLHKVS-EDG-VENFLSYVNGSKL-RFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDP  206 (370)
Q Consensus       130 ~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~-~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~  206 (370)
                      ++|++.....++.++ .+| ...-.....+... .....--+-.++.+++......            ....|.|+.+|.
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~  197 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDA  197 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEET
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEec
Confidence            899998778899999 678 3322221111110 0111111112577888755322            124578888998


Q ss_pred             CCCeEEE
Q 017520          207 SSNITTL  213 (370)
Q Consensus       207 ~t~~~~~  213 (370)
                      .||+..-
T Consensus       198 ~TG~~~W  204 (573)
T d1kb0a2         198 ETGERKW  204 (573)
T ss_dssp             TTCCEEE
T ss_pred             CCcccee
Confidence            8887643

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.56  E-value=0.071  Score=43.87  Aligned_cols=51  Identities=14%  Similarity=0.019  Sum_probs=37.2

Q ss_pred             ceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeC-Cc------EEEEEeCCC
Q 017520          199 GQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCES-WK------CRKYWLKGE  249 (370)
Q Consensus       199 g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~-~~------l~~~~~~~~  249 (370)
                      +.||.+|.++++.+.+..........+++|||+.|+++.. .+      |++++..+.
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            5688888888888777665555677899999998877632 11      777776654

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=94.01  E-value=1.6  Score=38.27  Aligned_cols=99  Identities=9%  Similarity=0.087  Sum_probs=58.9

Q ss_pred             CCCcceEEcCC--CcEEEEecCCeEEEEeC-C-eEEEEEec-------CCCceeceEEcCCC--cEEEEeCC------Cc
Q 017520           79 NHPEDASMDKN--GVIYTATRDGWIKRLQD-G-TWVNWKFI-------DSQTLVGLTSTKEG--HLIICDNA------NG  139 (370)
Q Consensus        79 ~~P~~i~~d~~--G~l~v~~~~g~I~~~~~-g-~~~~~~~~-------~~~p~~gl~~d~~G--~L~v~~~~------~g  139 (370)
                      ..-.+|++++.  ..+|+++..|+|+|-.+ | .++.+...       ..... +|++|+..  .+|++...      .+
T Consensus        12 g~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~~~~~~g   90 (427)
T d2ebsa1          12 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   90 (427)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEeccccCCcCcc
Confidence            45678999863  47999997788999883 4 35543211       11234 68898753  68987532      34


Q ss_pred             eEEEcCCC--eEEEEeecC----CcccccccceEEcCC--CcEEEEe
Q 017520          140 LHKVSEDG--VENFLSYVN----GSKLRFANDVVEASD--GSLYFTV  178 (370)
Q Consensus       140 i~~~~~~g--~~~~~~~~~----g~~~~~~~~l~~d~~--G~l~v~d  178 (370)
                      |++-...|  ++.+.....    .........|+++|.  ..+|++.
T Consensus        91 i~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~  137 (427)
T d2ebsa1          91 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  137 (427)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC
T ss_pred             EEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc
Confidence            65555545  554432211    111123456899985  3688874

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.48  E-value=2.1  Score=39.41  Aligned_cols=57  Identities=14%  Similarity=0.133  Sum_probs=41.8

Q ss_pred             CCcEEEEecCCeEEEEe--CCeEEEEEecC----C------CceeceEEcCCCcEEEEeCCCceEEEc-CCC
Q 017520           89 NGVIYTATRDGWIKRLQ--DGTWVNWKFID----S------QTLVGLTSTKEGHLIICDNANGLHKVS-EDG  147 (370)
Q Consensus        89 ~G~l~v~~~~g~I~~~~--~g~~~~~~~~~----~------~p~~gl~~d~~G~L~v~~~~~gi~~~~-~~g  147 (370)
                      +|.||+++.++.|+.+|  +|+...-....    .      ... |++.. ++.+|+++....++.+| ++|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKVFFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEEEEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEe-CCceEEecCCCeEEEeccccc
Confidence            58999999999999999  78765322111    1      112 56664 67899998888899999 678

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.59  E-value=1.7  Score=38.28  Aligned_cols=84  Identities=11%  Similarity=0.125  Sum_probs=51.4

Q ss_pred             CCceEEEEeCCCCeEEEEecCCCCccceEEccCCCEEEEEeCC-------c-EEEEEeCCCCCCceeeeccCCCCC---C
Q 017520          197 PHGQLLKYDPSSNITTLVADGFYFANGVALSRDEDYVVVCESW-------K-CRKYWLKGERKGKLETFAENLPGA---P  265 (370)
Q Consensus       197 ~~g~l~~~d~~t~~~~~~~~~~~~p~gi~~~~dg~~l~v~~~~-------~-l~~~~~~~~~~~~~~~~~~~~~g~---p  265 (370)
                      ....|+.++.+++....+..+-....++ ++.|++.+|++.+.       + |+++++++..  ..+.+...+.+.   -
T Consensus       342 g~~~ly~~~~~g~~~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~--~~~~lt~~~~~~~~~~  418 (470)
T d2bgra1         342 GYRHICYFQIDKKDCTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYT--KVTCLSCELNPERCQY  418 (470)
T ss_dssp             SCEEEEEEETTCSCCEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTT--CEEESSTTTSTTTBCB
T ss_pred             cCceeEEEeccCCceeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCC--ceeEecccccCCCCCE
Confidence            4456889998877666655544444444 55667778776431       1 8888887642  223332222221   2


Q ss_pred             CceeECCCCCEEEEEecC
Q 017520          266 DNINLAPDGTFWIAIIKL  283 (370)
Q Consensus       266 ~~i~~d~~G~lwv~~~~~  283 (370)
                      ..+.+++||++++.+..+
T Consensus       419 ~s~~fSpdgky~~~~~s~  436 (470)
T d2bgra1         419 YSVSFSKEAKYYQLRCSG  436 (470)
T ss_dssp             EEEEECTTSSEEEEEECS
T ss_pred             EEEEECCCCCEEEEEecC
Confidence            347799999988887765

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.35  E-value=2.1  Score=34.70  Aligned_cols=112  Identities=8%  Similarity=-0.062  Sum_probs=59.2

Q ss_pred             CCceeceEEcCCCcEEEEeCCCc-eEEEc-CCC--eEEEEeecCCcccccccceEEcCCC-cEEEEeCCCCCCCccceec
Q 017520          117 SQTLVGLTSTKEGHLIICDNANG-LHKVS-EDG--VENFLSYVNGSKLRFANDVVEASDG-SLYFTVSSSKYLPHEYCLD  191 (370)
Q Consensus       117 ~~p~~gl~~d~~G~L~v~~~~~g-i~~~~-~~g--~~~~~~~~~g~~~~~~~~l~~d~~G-~l~v~d~~~~~~~~~~~~~  191 (370)
                      .... +|+|+|+|+++++....| |..++ ..+  ...+.... + ....+..+++.+++ .+.++.+            
T Consensus        12 d~I~-~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-~-h~~~V~~v~f~~~~~~~l~sg~------------   76 (342)
T d1yfqa_          12 DYIS-DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-R-YKHPLLCCNFIDNTDLQIYVGT------------   76 (342)
T ss_dssp             SCEE-EEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-E-CSSCEEEEEEEESSSEEEEEEE------------
T ss_pred             CCEE-EEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec-C-CCCCEEEEEEeCCCCCEEEEcc------------
Confidence            3456 899999998666544444 44444 322  22222211 1 01356788887765 4444422            


Q ss_pred             ccccCCCceEEEEeCCCCeEEEEecCCCCc--cceEEccCCCEEEEEeCCc-EEEEEeCC
Q 017520          192 ILEGKPHGQLLKYDPSSNITTLVADGFYFA--NGVALSRDEDYVVVCESWK-CRKYWLKG  248 (370)
Q Consensus       192 ~~~~~~~g~l~~~d~~t~~~~~~~~~~~~p--~gi~~~~dg~~l~v~~~~~-l~~~~~~~  248 (370)
                           .++.+..++...+............  ......++...++.....+ +..+|+..
T Consensus        77 -----~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~  131 (342)
T d1yfqa_          77 -----VQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             -----TTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHH
T ss_pred             -----cccceeeeecccccccccccccccccccccccccccccccccccccccceeeccc
Confidence                 3467888887655444333222222  2233445666566555555 77777643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.33  E-value=2.5  Score=39.13  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             cccCceEecCCCcCC--CcceEEcCCCcEEEEec-CCeEEEEe---CCeEEEEEecC-----------CC-ceeceEEcC
Q 017520           66 QLQDFIKVGEGSVNH--PEDASMDKNGVIYTATR-DGWIKRLQ---DGTWVNWKFID-----------SQ-TLVGLTSTK  127 (370)
Q Consensus        66 ~l~~~~~~~~~~~~~--P~~i~~d~~G~l~v~~~-~g~I~~~~---~g~~~~~~~~~-----------~~-p~~gl~~d~  127 (370)
                      .|.-++.+..+...+  -.-|.+  +|.||+++. .+.|+.++   +|+...-....           +. -. |+++-+
T Consensus        39 ~L~~aW~~~~~~~~~~~~tPiv~--~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R-Gv~~~~  115 (596)
T d1w6sa_          39 QLRPAWTFSTGLLNGHEGAPLVV--DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWP  115 (596)
T ss_dssp             GEEEEEEEECSCCSCCCSCCEEE--TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEEC
T ss_pred             hceEEEEEECCCCCCceeCCEEE--CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc-eeEEec
Confidence            455555555432222  122554  589999874 57899998   47655332211           00 13 566542


Q ss_pred             CC-----cEEEEeCCCceEEEc-CCC-eEEEEeec---CCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCC
Q 017520          128 EG-----HLIICDNANGLHKVS-EDG-VENFLSYV---NGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKP  197 (370)
Q Consensus       128 ~G-----~L~v~~~~~gi~~~~-~~g-~~~~~~~~---~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~  197 (370)
                      +.     .+|+++.+..|+.+| ++| ...-....   .+.....+- +.  -++.++++.++.++            ..
T Consensus       116 ~~~~~~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P-~v--~~~~vivg~~~~e~------------~~  180 (596)
T d1w6sa_         116 GDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAP-YV--VKDKVIIGSSGAEL------------GV  180 (596)
T ss_dssp             CCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCC-EE--ETTEEEECCBCGGG------------TC
T ss_pred             CCCCCceEEEEEeCCCCeEeeccccCceeccccccccccccccccCC-cE--ECCeEEEeeccccc------------cc
Confidence            21     488888777899999 788 33222111   111111111 12  25788888654221            24


Q ss_pred             CceEEEEeCCCCeEEE
Q 017520          198 HGQLLKYDPSSNITTL  213 (370)
Q Consensus       198 ~g~l~~~d~~t~~~~~  213 (370)
                      .|.|..||..||+..-
T Consensus       181 ~G~v~A~Da~TG~~~W  196 (596)
T d1w6sa_         181 RGYLTAYDVKTGEQVW  196 (596)
T ss_dssp             CCEEEEEETTTCCEEE
T ss_pred             cCceEEEECCCCcEEE
Confidence            5788889988887643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.66  E-value=5  Score=36.93  Aligned_cols=42  Identities=17%  Similarity=0.114  Sum_probs=30.5

Q ss_pred             CCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEE
Q 017520          314 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI  357 (370)
Q Consensus       314 ~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~g  357 (370)
                      ....+.+..||. .|+++++|..+.+....+++.  +.+|+-||.
T Consensus       490 G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY--~~dGkQYva  532 (596)
T d1w6sa_         490 GTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTY--THKGTQYVA  532 (596)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEE
T ss_pred             ECCCCeEEEEECCCCcEeeEEECCCCcccCCeEE--EECCEEEEE
Confidence            455678999995 699999999988764544443  257787765

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=91.43  E-value=2.6  Score=36.08  Aligned_cols=100  Identities=21%  Similarity=0.322  Sum_probs=56.7

Q ss_pred             CCCcceEE--cC-CCcEE--EEecCCeEEEEe-----CCeEEE----EEecCCCceeceEEcCC-CcEEEEeCCCceEEE
Q 017520           79 NHPEDASM--DK-NGVIY--TATRDGWIKRLQ-----DGTWVN----WKFIDSQTLVGLTSTKE-GHLIICDNANGLHKV  143 (370)
Q Consensus        79 ~~P~~i~~--d~-~G~l~--v~~~~g~I~~~~-----~g~~~~----~~~~~~~p~~gl~~d~~-G~L~v~~~~~gi~~~  143 (370)
                      ..|.++|.  ++ +|.+|  +....|.+.+|.     ++.+..    -......+- |+++|.+ +.|||++...|++++
T Consensus       128 ~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E-GCVvDde~~~LyisEE~~Giw~~  206 (353)
T d1h6la_         128 DEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE-GMAADDEYGSLYIAEEDEAIWKF  206 (353)
T ss_dssp             SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEEE
T ss_pred             CcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc-eEEEeCCCCcEEEecCccceEEE
Confidence            35667777  54 57555  455778777664     333221    122344566 8888854 689999988899999


Q ss_pred             c--CCC--eEEEEeecCCcc-cccccceEE--cC--CCcEEEEeC
Q 017520          144 S--EDG--VENFLSYVNGSK-LRFANDVVE--AS--DGSLYFTVS  179 (370)
Q Consensus       144 ~--~~g--~~~~~~~~~g~~-~~~~~~l~~--d~--~G~l~v~d~  179 (370)
                      +  ++.  ...+.....+.. ..-+.+|++  ..  +|.|.+++.
T Consensus       207 ~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ  251 (353)
T d1h6la_         207 SAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ  251 (353)
T ss_dssp             ESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG
T ss_pred             EeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC
Confidence            8  332  333333222321 234566654  22  345555544

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.00  E-value=0.9  Score=40.79  Aligned_cols=110  Identities=7%  Similarity=-0.064  Sum_probs=60.1

Q ss_pred             CCcEEEEeCCCceEEEc-CCC-eEEEEeecCCcccccccceEEcCCCc-EEEE-eCCCCCCCccceecccccCCCceEEE
Q 017520          128 EGHLIICDNANGLHKVS-EDG-VENFLSYVNGSKLRFANDVVEASDGS-LYFT-VSSSKYLPHEYCLDILEGKPHGQLLK  203 (370)
Q Consensus       128 ~G~L~v~~~~~gi~~~~-~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~-l~v~-d~~~~~~~~~~~~~~~~~~~~g~l~~  203 (370)
                      ++.++.-+..+.+..++ +++ .+.+..... .....+....++|||+ +++. +....|          .+...+..+.
T Consensus        27 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~~~~~i   95 (465)
T d1xfda1          27 DTEFIYREQKGTVRLWNVETNTSTVLIEGKK-IESLRAIRYEISPDREYALFSYNVEPIY----------QHSYTGYYVL   95 (465)
T ss_dssp             SSCBCCCCSSSCEEEBCGGGCCCEEEECTTT-TTTTTCSEEEECTTSSEEEEEESCCCCS----------SSCCCSEEEE
T ss_pred             CCcEEEEeCCCcEEEEECCCCCEEEEEcCcc-ccccccceeEECCCCCeEEEEEccccee----------EeeccccEEE
Confidence            44433333334566666 455 444433211 1112345667899995 4444 332111          2234578899


Q ss_pred             EeCCCCeEEEEecCCCCc---cceEEccCCCEEEEEeCCcEEEEEeCC
Q 017520          204 YDPSSNITTLVADGFYFA---NGVALSRDEDYVVVCESWKCRKYWLKG  248 (370)
Q Consensus       204 ~d~~t~~~~~~~~~~~~p---~gi~~~~dg~~l~v~~~~~l~~~~~~~  248 (370)
                      +|..++..+.+.......   .-..++|||+.+.+...++|+..+..+
T Consensus        96 ~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~  143 (465)
T d1xfda1          96 SKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVG  143 (465)
T ss_dssp             EESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSS
T ss_pred             EEccCCceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCC
Confidence            999888776654322222   235788999877766655577776544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=90.73  E-value=6  Score=36.12  Aligned_cols=42  Identities=21%  Similarity=0.192  Sum_probs=29.7

Q ss_pred             CCCceEEEEECC-CCcEEEEEeCCCCCccccceeEEEECCEEEEE
Q 017520          314 LGGGAHLIHVAE-DGTIIRNLVDPTGQLMSFVTSGLQVDNHLYVI  357 (370)
Q Consensus       314 ~~~~g~v~~~~~-~g~~~~~~~~~~g~~~~~~t~~~~~~g~L~~g  357 (370)
                      ....+.+..+|. +|+++++|..+.+....+++.  +.+|+.||.
T Consensus       494 G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty--~~~GkQYv~  536 (573)
T d1kb0a2         494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTY--MVDGRQYVS  536 (573)
T ss_dssp             ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--EETTEEEEE
T ss_pred             ECCCCeEEEEECCCCcEeEEEECCCCccccCEEE--EECCEEEEE
Confidence            344578999995 799999999987754444333  367887763

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=88.30  E-value=3.5  Score=35.84  Aligned_cols=116  Identities=9%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CCCceeceEEcCCC--cEEEEeCCCceEEEcCCC--eEEEEeec--CCcccccccceEEcCC--CcEEEEeCCCCCCCcc
Q 017520          116 DSQTLVGLTSTKEG--HLIICDNANGLHKVSEDG--VENFLSYV--NGSKLRFANDVVEASD--GSLYFTVSSSKYLPHE  187 (370)
Q Consensus       116 ~~~p~~gl~~d~~G--~L~v~~~~~gi~~~~~~g--~~~~~~~~--~g~~~~~~~~l~~d~~--G~l~v~d~~~~~~~~~  187 (370)
                      .++.. +|+++|..  .+|++...+||++-+..|  .+.+....  .......+.+|++||.  ..+|++.....     
T Consensus        11 gg~~~-~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~-----   84 (427)
T d2ebsa1          11 GGYIT-GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYV-----   84 (427)
T ss_dssp             CSCEE-EEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCT-----
T ss_pred             CCcEE-EEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEecccc-----
Confidence            45677 99998754  688887667898877555  54432211  1122345678999986  47888754210     


Q ss_pred             ceecccccCCCceEEEEeCCCCeEEEEecCC---------CCccceEEccC-CCEEEEEeCCc-EEEE
Q 017520          188 YCLDILEGKPHGQLLKYDPSSNITTLVADGF---------YFANGVALSRD-EDYVVVCESWK-CRKY  244 (370)
Q Consensus       188 ~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~~---------~~p~gi~~~~d-g~~l~v~~~~~-l~~~  244 (370)
                             ....++|++=.-....++.+....         .....++++|. .+.+|++...+ |++-
T Consensus        85 -------~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S  145 (427)
T d2ebsa1          85 -------GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWKS  145 (427)
T ss_dssp             -------TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEECSSSCEEEE
T ss_pred             -------CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccccccceeee
Confidence                   112345665544334444443221         12245888885 45577776555 7763

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=86.27  E-value=8.2  Score=32.37  Aligned_cols=72  Identities=19%  Similarity=0.152  Sum_probs=46.2

Q ss_pred             cccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC--CCCccceEEccCCCEEEEEeCC
Q 017520          162 FANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG--FYFANGVALSRDEDYVVVCESW  239 (370)
Q Consensus       162 ~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~--~~~p~gi~~~~dg~~l~v~~~~  239 (370)
                      +....++..+|++|+.-..                ....+.+||+.++..+.....  -..-.+.++..||+.+++....
T Consensus        77 ~~~~~~~~~~g~i~v~Gg~----------------~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          77 FCPGISMDGNGQIVVTGGN----------------DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             SSCEEEECTTSCEEEECSS----------------STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             ceeEEEEecCCcEEEeecC----------------CCcceeEecCccCcccccccccccccccceeeecCCceeeecccc
Confidence            3446788899999998432                235688999998887764321  1122457777899854444321


Q ss_pred             ------c-EEEEEeCCC
Q 017520          240 ------K-CRKYWLKGE  249 (370)
Q Consensus       240 ------~-l~~~~~~~~  249 (370)
                            . +.+||+...
T Consensus       141 ~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         141 SGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             CSSSCCCCEEEEETTTT
T ss_pred             ccccccceeeeecCCCC
Confidence                  1 888987543

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.70  E-value=7.8  Score=30.55  Aligned_cols=135  Identities=16%  Similarity=0.147  Sum_probs=68.6

Q ss_pred             ceEEcCCCcEEEEecCCe--EEEEeCCeEEEEEecCCCceeceEEcCCCcEEEEeCC--C---ceEEEc-CCC-eEEEEe
Q 017520           83 DASMDKNGVIYTATRDGW--IKRLQDGTWVNWKFIDSQTLVGLTSTKEGHLIICDNA--N---GLHKVS-EDG-VENFLS  153 (370)
Q Consensus        83 ~i~~d~~G~l~v~~~~g~--I~~~~~g~~~~~~~~~~~p~~gl~~d~~G~L~v~~~~--~---gi~~~~-~~g-~~~~~~  153 (370)
                      +++.|...-+++|....+  +|.+++|+++......  |. ++..|-.|++.++..-  .   .++.-| ..| ++.+.+
T Consensus       108 S~~yddk~vvF~Gased~~~LYviegGklrkL~~vP--pF-sFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~tp  184 (313)
T d2hu7a1         108 SGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP--GF-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFDS  184 (313)
T ss_dssp             EEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES--SC-EEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEECC
T ss_pred             EeeecCceEEEecccCCceEEEEEeCCceeeeccCC--Cc-ceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEecC
Confidence            566676677888884333  5555588887765543  33 4444444444433210  0   122222 233 443321


Q ss_pred             ecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEec-C----CCCccceE---
Q 017520          154 YVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVAD-G----FYFANGVA---  225 (370)
Q Consensus       154 ~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~-~----~~~p~gi~---  225 (370)
                      . +    .+++.-...++.++ ++|-              |.........+|+.+++.+.+.- .    ...|..|.   
T Consensus       185 k-e----GS~~~ay~~~gnKV-~sdy--------------Et~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~  244 (313)
T d2hu7a1         185 G-E----GSFSSASISPGMKV-TAGL--------------ETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLG  244 (313)
T ss_dssp             S-S----EEEEEEEECTTSCE-EEEE--------------EESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEE
T ss_pred             C-C----CcccceeEccCcee-eecc--------------CCCCceEEEEEecccCceeeeecCcccceeecceEEEeee
Confidence            1 1    13333334344444 4432              22234455577888777765421 1    12345555   


Q ss_pred             EccCCCEEEEEeCCc
Q 017520          226 LSRDEDYVVVCESWK  240 (370)
Q Consensus       226 ~~~dg~~l~v~~~~~  240 (370)
                      .+||++.++++-..+
T Consensus       245 Y~Pdd~L~iiakrdG  259 (313)
T d2hu7a1         245 YLPDGRLAVVARREG  259 (313)
T ss_dssp             ECTTSCEEEEEEETT
T ss_pred             eCCCCcEEEEEecCC
Confidence            889999668888766

>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=82.15  E-value=13  Score=31.33  Aligned_cols=154  Identities=12%  Similarity=0.042  Sum_probs=76.6

Q ss_pred             cceEEcC-CCcEEEEecCCeEEEEeC-Ce-EEEEEec--CCCceeceEEcC--CCcEEEEeCCCceEEEcCCC--eEEEE
Q 017520           82 EDASMDK-NGVIYTATRDGWIKRLQD-GT-WVNWKFI--DSQTLVGLTSTK--EGHLIICDNANGLHKVSEDG--VENFL  152 (370)
Q Consensus        82 ~~i~~d~-~G~l~v~~~~g~I~~~~~-g~-~~~~~~~--~~~p~~gl~~d~--~G~L~v~~~~~gi~~~~~~g--~~~~~  152 (370)
                      ..|+.|+ +.+++.+...|.|++-.| |+ +......  ..... .+++++  .|.||++....||++-...|  ++.+.
T Consensus       163 ~~i~~d~~~~~~~Ya~~~g~ly~StDgG~TW~~~~~~~~~~~~~-~~~v~p~~~g~v~v~~~~~Gl~~StDgG~TWt~i~  241 (356)
T d2ebsa2         163 ANVLSDKVQDGTFYATDGGKFFVSTDGGKSYAAKGAGLVTGTSL-MPAVNPWVAGDVWVPVPEGGLFHSTDFGASFTRVG  241 (356)
T ss_dssp             SCEEECSSSTTCEEEEETTEEEEESSTTSEEEECCBTCCCCCCC-CCEECTTSTTCEEEEETTTEEEEESSTTSBCEEES
T ss_pred             cEEEEeCcCCceEEecccceEEEeCCCcccccccccCCccccce-eEEEEeccCCceeecccccceEEecCCcceEEEcc
Confidence            4578885 444444444678988773 43 4432221  12233 566664  57899988777898877655  55442


Q ss_pred             eecCC-ccccccc--ceEEcC--CCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEecC---CCCccce
Q 017520          153 SYVNG-SKLRFAN--DVVEAS--DGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVADG---FYFANGV  224 (370)
Q Consensus       153 ~~~~g-~~~~~~~--~l~~d~--~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~~~---~~~p~gi  224 (370)
                      ..... ..+....  ......  ...+|+....             ......+|||=+-....++.+.+.   ...++.|
T Consensus       242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~g~~-------------~~~~~~GvyrS~D~G~TW~~Ind~~~~~g~~~~i  308 (356)
T d2ebsa2         242 TANATLVSVGAPKSKSDGKKASAPSAVFIWGTD-------------KPGSDIGLYRSDDNGSTWTRVNDQEHNYSGPTMI  308 (356)
T ss_dssp             SCEEEEEEEEEEC---------CCEEEEEEEES-------------STTSCSEEEEESSTTSSCEECCCTTSCTTCEEEE
T ss_pred             CCCCCcceecccccccccccCCCCceEEEEEEe-------------cCCCcEeEEEEeCCCCCceECcCCCCCCCceeEE
Confidence            21000 0000000  111111  1234433211             011234577765544445544332   2345667


Q ss_pred             EEccCC-CEEEEEeCCc-EEEEEeCCC
Q 017520          225 ALSRDE-DYVVVCESWK-CRKYWLKGE  249 (370)
Q Consensus       225 ~~~~dg-~~l~v~~~~~-l~~~~~~~~  249 (370)
                      ..|+.. ..+|++..++ |+.-+++..
T Consensus       309 ~~Dp~~~grvYvgT~GrGi~y~~~~~~  335 (356)
T d2ebsa2         309 EADPKVYGRVYLGTNGRGIVYADLTNK  335 (356)
T ss_dssp             EECTTSTTCEEEEEBSSCEEEEECCC-
T ss_pred             EcCCCcCCEEEEEeCCCcEEEEeCCCC
Confidence            777742 2399988777 777777654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=9.6  Score=29.53  Aligned_cols=59  Identities=17%  Similarity=0.121  Sum_probs=34.5

Q ss_pred             EcCCC-cEEEEecCCeEEEEe--CCeEE-EEEecCCCceeceEEcCCCcEEE-EeCCCceEEEc-CCC
Q 017520           86 MDKNG-VIYTATRDGWIKRLQ--DGTWV-NWKFIDSQTLVGLTSTKEGHLII-CDNANGLHKVS-EDG  147 (370)
Q Consensus        86 ~d~~G-~l~v~~~~g~I~~~~--~g~~~-~~~~~~~~p~~gl~~d~~G~L~v-~~~~~gi~~~~-~~g  147 (370)
                      ++.+| .|..|+.||.|..|+  +++.. .+....+... ++.+  ++++++ +..++.+..++ ..+
T Consensus        21 ~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~v~~--~~~~l~s~s~D~~i~~~~~~~~   85 (293)
T d1p22a2          21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTG   85 (293)
T ss_dssp             EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEe-eeec--ccceeecccccccccccccccc
Confidence            34445 466677999999999  56644 3333344555 6766  455544 44334455555 444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=81.69  E-value=13  Score=30.95  Aligned_cols=116  Identities=14%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             EEcCCCcEEEEe-c-----CC------eEEEEe--CCeEEEEEec---CC-CceeceEEcCCCcEEEEeCC--CceEEEc
Q 017520           85 SMDKNGVIYTAT-R-----DG------WIKRLQ--DGTWVNWKFI---DS-QTLVGLTSTKEGHLIICDNA--NGLHKVS  144 (370)
Q Consensus        85 ~~d~~G~l~v~~-~-----~g------~I~~~~--~g~~~~~~~~---~~-~p~~gl~~d~~G~L~v~~~~--~gi~~~~  144 (370)
                      ++-.+|+||+-. .     .+      .+..+|  +++++.....   .. .-. +.++..+|.+|++...  ..+..+|
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~-~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP-GISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC-EEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccccee-EEEEecCCcEEEeecCCCcceeEec
Confidence            344588888732 1     11      255667  5655432211   11 123 5678889999997533  3577788


Q ss_pred             -CCC-eEEEEeecCCcccccccceEEcCCCcEEEEeCCCCCCCccceecccccCCCceEEEEeCCCCeEEEEe
Q 017520          145 -EDG-VENFLSYVNGSKLRFANDVVEASDGSLYFTVSSSKYLPHEYCLDILEGKPHGQLLKYDPSSNITTLVA  215 (370)
Q Consensus       145 -~~g-~~~~~~~~~g~~~~~~~~l~~d~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t~~~~~~~  215 (370)
                       .+. ....... ...  ..-+..++..||++|+.-....           .......+.+||+.+++++.+.
T Consensus       105 ~~~~~w~~~~~~-~~~--r~~~~~~~~~dG~v~v~GG~~~-----------~~~~~~~v~~yd~~~~~W~~~~  163 (387)
T d1k3ia3         105 SSSDSWIPGPDM-QVA--RGYQSSATMSDGRVFTIGGSWS-----------GGVFEKNGEVYSPSSKTWTSLP  163 (387)
T ss_dssp             GGGTEEEECCCC-SSC--CSSCEEEECTTSCEEEECCCCC-----------SSSCCCCEEEEETTTTEEEEET
T ss_pred             CccCcccccccc-ccc--ccccceeeecCCceeeeccccc-----------cccccceeeeecCCCCceeecC
Confidence             455 5443222 111  2334677788999998854211           0112346889999988887653