Citrus Sinensis ID: 017521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQSLPECECNI
Secondary Structure (PSIPRED)
cccEEEEEEcccccHHHHHHHHHHccccEEEEEEcccccHHHHHcccccccEEEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccccccccccHHHHHHcccEEEEcccccccccccccccccccccccEEEEEccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccHHHHHHHHHHccccEEEEEEccccccEEEEccccccccEEEEEEccccHHHHHHHHcccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccEEEEEccccccccccEEEEEEcccccccEEEEEccccHHHHHcccHHHHHccccccHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccc
Coil and Loop (DISEMBL)
MSSAFVLTirggcsfeDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLkqyagstdmeiwiipsfensawSIMAISFISLLAMSAVLATCFFVRrhrirreaprasrgrefhGMSRRLVKAMPSLIFTAVVednctsrtcaicledysvgeklrilpcrhkFHAFCVDSWLtswrtfcpvckrdartstgeppasestpllssspassSILSSIRSSlasssalhippsmshspsvshihsvastpyipqslrsycqsppisvsrssldlrhassqrshgsyimsshsigypsisplnsrymspylpspsnaspslvgssshqqhplhysesatsfspfasaqslpececni
Flexible Loop (DISEMBL)
mssafvltirggcsfeDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFvrrhrirreaprasrgrefhgmsrrLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDartstgeppasestpllssspaSSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQSLPECECNI
Low Complexity Region (SEG)
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVrrhrirreaprasrgrEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEppasestpllssspasssilssirsslasssalhippsmshspsvshihsvasTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQSLPECECNI
Disordered region (IsUnstruct)
****FVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIR**************MSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK**************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVL*******AGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA****************************************************************************************************************************************************************PECECN*
Disordered Region (DISEMBL)
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR*******************************************************IHSVASTPYIPQSLRSYCQ************************YIMSSHSIGYPSISPLNSRYMSPYLP***********************ESATSFSP**************
Disordered Region (DISPRO)
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG*****************************************************************************************************PSISPLNSRYMSPYLPSPSNASP**V**SSH*********************SLPEC*CNI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQSLPECECNI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
Q90972	381	E3 ubiquitin-protein liga	yes	no	0.556	0.540	0.331	3e-25
Q9H6Y7	350	E3 ubiquitin-protein liga	yes	no	0.581	0.614	0.333	6e-25
Q0VD51	380	E3 ubiquitin-protein liga	no	no	0.597	0.581	0.326	6e-25
Q66HG0	380	E3 ubiquitin-protein liga	yes	no	0.624	0.607	0.315	2e-24
O54965	381	E3 ubiquitin-protein liga	yes	no	0.613	0.595	0.320	2e-24
Q91XF4	347	E3 ubiquitin-protein liga	no	no	0.581	0.619	0.321	5e-24
Q5XIL0	349	E3 ubiquitin-protein liga	no	no	0.581	0.616	0.324	6e-24
Q5RCV8	381	E3 ubiquitin-protein liga	yes	no	0.556	0.540	0.314	2e-23
O43567	381	E3 ubiquitin-protein liga	no	no	0.556	0.540	0.314	2e-23
Q06003	461	Protein goliath OS=Drosop	no	no	0.578	0.464	0.277	2e-19

>sp|Q90972|RNF13_CHICK E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1

 Score =  116 bits (290), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 118/235 (50%), Gaps = 29/235 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS----AGIKIHAV 56
           S+AF++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N       I I +V
Sbjct: 90  STAFIVLIRRLECNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEILKKIDIPSV 148

Query: 57  FVSKASGEKLKQ-YAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ +AS   LK+ +       + +IP F +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGEASANSLKEEFTYEKGGHVVLIPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E +     CAICL++Y  G+KLRILP
Sbjct: 208 ------QDRHRARRNRLRKDQLKKLPVHKFKKGDEYD----VCAICLDEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLL 219
           C H +H  CVD WLT  +  CPVCK+    S G           E   SE+TPLL
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSETDSSQEENEVSENTPLL 312

E3 ubiquitin-protein ligase. May play a role in controlling cell proliferation, including that of muscle cells.
Gallus gallus (taxid: 9031)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9H6Y7|RN167_HUMAN E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/261 (33%), Positives = 121/261 (46%), Gaps = 46/261 (17%)

Query: 2   SSAFV-LTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIK----IHAV 56
            S F+ L  R  C+F+ KV NAQKAG+ AA+V+ N +   L+ M  NS  I+    I +V
Sbjct: 80  GSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVH-NVNSNELLNMVWNSEEIQQQIWIPSV 138

Query: 57  FVSKASGEKLKQ-YAGSTDMEIWIIP--SFENSAWSIMAISFISLL--AMSAVLATCFFV 111
           F+ + S E L+  +       + ++P  +F    + I     + LL  AM AV+      
Sbjct: 139 FIGERSSEYLRALFVYEKGARVLLVPDNTFPLGYYLIPFTGIVGLLVLAMGAVMIARCIQ 198

Query: 112 RRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKL 171
            R R++R                RL K     I T   +       CAICL++Y  G+KL
Sbjct: 199 HRKRLQRN---------------RLTKEQLKQIPTHDYQKGDQYDVCAICLDEYEDGDKL 243

Query: 172 RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR-----------------TSTGEP---P 211
           R+LPC H +H+ CVD WLT  R  CP+CK+                       GEP   P
Sbjct: 244 RVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEEETQGQEEGDEGEPRDHP 303

Query: 212 ASESTPLLSSSPASSSILSSI 232
           ASE TPLL SSP   +   S+
Sbjct: 304 ASERTPLLGSSPTLPTSFGSL 324

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0VD51|RNF13_BOVIN E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 123/254 (48%), Gaps = 33/254 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS----AGIKIHAV 56
           S  F++ IR   C+F++KV NAQ+AG++AAIV+ N D   L++M  N       I I +V
Sbjct: 90  SGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEVLKKIDIPSV 148

Query: 57  FVSKASGEKLK-QYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ ++S   LK ++       I ++P F +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGESSANSLKDEFTYEKGGHIILVPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E       CAICL++Y  G+KLRILP
Sbjct: 208 ------QDRHRARRNRLRKDQLKKLPVHKFKKGDE----YDVCAICLDEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLL----S 220
           C H +H  CVD WLT  +  CPVCK+    S G           E   SE TPLL    S
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVSEHTPLLRPLAS 317

Query: 221 SSPASSSILSSIRS 234
           +S  S   LS  RS
Sbjct: 318 ASTQSFGALSESRS 331

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q66HG0|RNF13_RAT E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/263 (31%), Positives = 126/263 (47%), Gaps = 32/263 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGI----KIHAV 56
           S  F++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N   I     I +V
Sbjct: 90  SGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIDILKKIDIPSV 148

Query: 57  FVSKASGEKLK-QYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ ++S   LK ++       + ++P   +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGESSANSLKDEFTYEKGGHVILVPEL-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E       CAICLE+Y  G+KLRILP
Sbjct: 208 ------QDRHRNRRNRLRKDQLKKLPVHKFKKGDE----YDVCAICLEEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLLSSSPA 224
           C H +H  CVD WLT  +  CPVCK+    S G           E   SE TPLL   P 
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENQVSEHTPLL---PP 314

Query: 225 SSSILSSIRSSLASSSALHIPPS 247
           S+S  +    SL+ S + H+  S
Sbjct: 315 SASARTQSFGSLSESHSHHMTES 337

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O54965|RNF13_MOUSE E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=2

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/259 (32%), Positives = 124/259 (47%), Gaps = 32/259 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAG----IKIHAV 56
           S  F++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N       I I +V
Sbjct: 90  SGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIDTLKKIDIPSV 148

Query: 57  FVSKASGEKLK-QYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ ++S   LK ++       I ++P   +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGESSANSLKDEFTYEKGGHIILVPEL-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E       CAICLE+Y  G+KLRILP
Sbjct: 208 ------QDRHRNRRNRLRKDQLKKLPVHKFKKGDE----YDVCAICLEEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLLSSSPA 224
           C H +H  CVD WLT  +  CPVCK+    S G           E   SE TPLL   P 
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENQVSEHTPLL---PP 314

Query: 225 SSSILSSIRSSLASSSALH 243
           S+S  +    SL+ S + H
Sbjct: 315 SASARTQSFGSLSESHSHH 333

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q91XF4|RN167_MOUSE E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1

 Score =  112 bits (279), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 127/261 (48%), Gaps = 46/261 (17%)

Query: 2   SSAFV-LTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIK----IHAV 56
            S F+ L  R  C+F+ KV NAQKAG+ AA+V+ N +   L+ M  NS  I+    I +V
Sbjct: 80  GSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVH-NVNSNELLNMVWNSEEIQQQIWIPSV 138

Query: 57  FVSKASGEKLKQ-YAGSTDMEIWIIP--SFENSAWSIMAISFISLLAMSAVLATCFFVR- 112
           F+ + S E L+  +       + ++P  SF    + I     + LL ++  + T   VR 
Sbjct: 139 FIGERSAEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLA--MGTVLIVRC 196

Query: 113 -RHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKL 171
            +HR R +  R         +++  +K +P+  +    E +     CAICL++Y  G+KL
Sbjct: 197 IQHRKRLQRNR---------LTKEQLKQIPTHDYQKGDEYD----VCAICLDEYEDGDKL 243

Query: 172 RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG--------------------EPP 211
           R+LPC H +H+ CVD WLT  R  CP+CK+      G                    + P
Sbjct: 244 RVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQEQEEGDEGEPRDQP 303

Query: 212 ASESTPLLSSSPASSSILSSI 232
           ASE TPLL SSP   +   S+
Sbjct: 304 ASEWTPLLGSSPTLPTSFGSL 324

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XIL0|RN167_RAT E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 127/262 (48%), Gaps = 47/262 (17%)

Query: 2   SSAFV-LTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIK----IHAV 56
            S F+ L  R  C+F+ KV NAQKAG+ AA+V+ N +   L+ M  NS  I+    I +V
Sbjct: 80  GSVFIALLRRFDCNFDLKVLNAQKAGYGAAVVH-NVNSNELLNMVWNSEEIQQQIWIPSV 138

Query: 57  FVSKASGEKLKQ-YAGSTDMEIWIIP--SFENSAWSIMAISFISLLAMSAVLATCFFVR- 112
           F+ + S E L+  +       + ++P  SF    + I     + LL ++  + T   VR 
Sbjct: 139 FIGERSAEYLRALFVYEKGARVLLVPDNSFPLGYYLIPFTGIVGLLVLA--MGTVLIVRC 196

Query: 113 -RHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKL 171
            +HR R +  R         +++  +K +P+  +    E +     CAICL++Y  G+KL
Sbjct: 197 IQHRKRLQRNR---------LTKEQLKQIPTHDYQKGDEYD----VCAICLDEYEDGDKL 243

Query: 172 RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG---------------------EP 210
           RILPC H +H+ CVD WLT  R  CP+CK+      G                     + 
Sbjct: 244 RILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEEETQGQEEEGDEGEPRDQ 303

Query: 211 PASESTPLLSSSPASSSILSSI 232
           PASE TPLL SSP   +   S+
Sbjct: 304 PASEWTPLLGSSPTLPTSFGSL 325

May act as an E3 ubiquitin-protein ligase, or as part of the E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes, such as UBE2E1, and then transfers it to substrates, such as SLC22A18. May play a role in growth regulation involved in G1/S transition.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RCV8|RNF13_PONAB E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 29/235 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS----AGIKIHAV 56
           S  F++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N       I I +V
Sbjct: 90  SGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEVLKKIDIPSV 148

Query: 57  FVSKASGEKLK-QYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ ++S   LK ++       + ++P F +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGESSANSLKDEFTYEKGGHLILVPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E       CAICL++Y  G+KLRILP
Sbjct: 208 ------QDRHRARRNRLRKDQLKKLPVHKFKKGDE----YDVCAICLDEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLL 219
           C H +H  CVD WLT  +  CPVCK+    S G           E   +E TPLL
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLL 312

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O43567|RNF13_HUMAN E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 29/235 (12%)

Query: 2   SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS----AGIKIHAV 56
           S  F++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N       I I +V
Sbjct: 90  SGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEVLKKIDIPSV 148

Query: 57  FVSKASGEKLK-QYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHR 115
           F+ ++S   LK ++       + ++P F +       I F+ ++ +  +L   F + +  
Sbjct: 149 FIGESSANSLKDEFTYEKGGHLILVPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query: 116 IRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                 +       + + +  +K +P   F    E       CAICL++Y  G+KLRILP
Sbjct: 208 ------QDRHRARRNRLRKDQLKKLPVHKFKKGDE----YDVCAICLDEYEDGDKLRILP 257

Query: 176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG-----------EPPASESTPLL 219
           C H +H  CVD WLT  +  CPVCK+    S G           E   +E TPLL
Sbjct: 258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVTEHTPLL 312

E3 ubiquitin-protein ligase that may play a role in controlling cell proliferation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q06003|GOLI_DROME Protein goliath OS=Drosophila melanogaster GN=gol PE=2 SV=3

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 13/227 (5%)

Query: 7   LTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKL 66
           L  RG C+FE+KV++  +      I+Y+++    L  M        I AV   +  G+ L
Sbjct: 144 LVRRGRCTFEEKVKHVYQQNAAGVIIYNDKQVMQLEKMQIKGKTRNIAAVITYQNIGQDL 203

Query: 67  -----KQYAGSTDM-----EIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRI 116
                K Y  +  +      +  I S   ++   ++ISFI L+ +S V    ++++R R 
Sbjct: 204 SLTLDKGYNVTISIIEGRRGVRTISSLNRTSVLFVSISFIVLMIISLVWLIFYYIQRFRY 263

Query: 117 RREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPC 176
            +   + SR      ++++ +  +P+       E +  S  CAIC+E Y   + +RILPC
Sbjct: 264 MQAKDQQSRN--LCSVTKKAIMKIPTKTGKFSDEKDLDSDCCAICIEAYKPTDTIRILPC 321

Query: 177 RHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSP 223
           +H+FH  C+D WL   RT CP+CK D     G         +L   P
Sbjct: 322 KHEFHKNCIDPWLIEHRT-CPMCKLDVLKFYGYVFLGSEESILEYQP 367

Regulation of gene expression during embryonic mesoderm formation. Putative role as transcription factor.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
225470792	446	PREDICTED: E3 ubiquitin-protein ligase R	0.981	0.813	0.824	1e-144
356576139	495	PREDICTED: E3 ubiquitin-protein ligase R	0.983	0.735	0.671	1e-142
224146378	437	predicted protein [Populus trichocarpa]	0.975	0.826	0.748	1e-142
296081075	424	unnamed protein product [Vitis vinifera]	0.924	0.806	0.780	1e-138
356535715	469	PREDICTED: E3 ubiquitin-protein ligase R	0.983	0.776	0.715	1e-137
449528049	463	PREDICTED: E3 ubiquitin-protein ligase R	0.981	0.784	0.721	1e-129
449441754	451	PREDICTED: E3 ubiquitin-protein ligase R	0.981	0.804	0.721	1e-129
6942149	444	ReMembR-H2 protein JR702 [Arabidopsis th	0.981	0.817	0.696	1e-128
22330577	448	protease-associated and C3HC4-type RING	0.981	0.810	0.696	1e-128
12324534	424	unknown protein; 70660-72219 [Arabidopsi	0.981	0.856	0.696	1e-128

>gi|225470792|ref|XP_002269731.1| PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Vitis vinifera]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 305/370 (82%), Positives = 331/370 (89%), Gaps = 7/370 (1%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS FVL +RGGC FEDKVRNAQKAGF AAIVYDNED GVLVAMAGNSAGIKIHAVFVSKA
Sbjct: 79  SSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIKIHAVFVSKA 138

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SG  L+ YAGS DME+WIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRR+ P
Sbjct: 139 SGMVLQTYAGSPDMELWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRQRP 198

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R SR REFHGMS RLVKAMPSLIFT V+EDNCTSRTCAICLEDY+VGEKLRILPCRHKFH
Sbjct: 199 RVSRVREFHGMSSRLVKAMPSLIFTTVLEDNCTSRTCAICLEDYNVGEKLRILPCRHKFH 258

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS---SSILSSIRSSLAS 238
           AFCVDSWLTSWRTFCPVCKRDARTSTG+PP SESTPLLSSSP S   SS++SS+RSSLAS
Sbjct: 259 AFCVDSWLTSWRTFCPVCKRDARTSTGDPP-SESTPLLSSSPGSLAPSSLVSSVRSSLAS 317

Query: 239 SSALHIPPSMSHSPSVSHI--HSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRS 296
           SSA+HI PS S S S+S    +S+++TPYI QSL+SY QS  +SVSRSSLDLR+ASSQRS
Sbjct: 318 SSAIHIAPSPSPSHSLSVSRNNSLSATPYIQQSLQSYRQS-SLSVSRSSLDLRNASSQRS 376

Query: 297 HGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSP 356
           H SY++S HS+GYPS+SPLNSRY+SPY+PSPSNAS S VGSSS   HPLHYSESATSFSP
Sbjct: 377 HASYLVSPHSMGYPSLSPLNSRYLSPYIPSPSNASLSYVGSSSRPPHPLHYSESATSFSP 436

Query: 357 FASAQSLPEC 366
           + SAQSLPEC
Sbjct: 437 YTSAQSLPEC 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576139|ref|XP_003556191.1| PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max]

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 282/420 (67%), Positives = 319/420 (75%), Gaps = 56/420 (13%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS F L +RGGCSFE+KVR AQKAGF+A IVYDNE+ G+LVAMAGNSAGI+IHAVFVSKA
Sbjct: 77  SSPFALVVRGGCSFEEKVRIAQKAGFKAVIVYDNEEGGILVAMAGNSAGIRIHAVFVSKA 136

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SGE LK+YAG T++EIW+IP+FENSAWSIMAISFISLLAMSAVLATCFFVR+HRIRRE P
Sbjct: 137 SGEILKKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRKHRIRRERP 196

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           RAS  REFHGMS RLVKAMPSL+FT+V+EDNCTSRTCAICLEDY VGEKLRILPC HKFH
Sbjct: 197 RASLVREFHGMSSRLVKAMPSLVFTSVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFH 256

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS---------------- 225
           A CVDSWLTSWRTFCPVCKRDART   +PP SESTPLLSS+PAS                
Sbjct: 257 AACVDSWLTSWRTFCPVCKRDARTGLTDPPPSESTPLLSSTPASMASSVLSSARSSLASS 316

Query: 226 --------SSILSS-----------------IRSSLASSSALH-------------IPPS 247
                   +S+ SS                  R++  +SSALH             I  +
Sbjct: 317 SAIQIARTASMASSALPSARSSLASSSAIQIARTASMASSALHSARSSLASSSAIQISRA 376

Query: 248 MSHSPSVSHIHSVASTPYIPQSLR-SYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHS 306
            S +PSVS  HS+ASTPY+  SLR SY QSP +S+SRSS+DLR+A SQRS  S++ S  S
Sbjct: 377 ASQTPSVSRNHSIASTPYVQPSLRSSYHQSPSLSISRSSVDLRNA-SQRSLASHLNSPCS 435

Query: 307 IGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQSLPEC 366
           +GYPS+S LNSRYMSP++PSPSNAS S +GSSSHQQHPL YSESA SFSPFAS  SLPEC
Sbjct: 436 MGYPSLSSLNSRYMSPHIPSPSNASVSYMGSSSHQQHPLRYSESAASFSPFASTHSLPEC 495

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146378|ref|XP_002325986.1| predicted protein [Populus trichocarpa] gi|222862861|gb|EEF00368.1| predicted protein [Populus trichocarpa]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/366 (74%), Positives = 310/366 (84%), Gaps = 5/366 (1%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS FVL IR GCSFEDKVR AQKAG++AAI+YDNE+ G+LVAMAGNSAG+ I AVFVSK 
Sbjct: 76  SSPFVLIIREGCSFEDKVRRAQKAGYKAAIIYDNEE-GILVAMAGNSAGVTIPAVFVSKT 134

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SGE LK+YAG TD+E+WIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRE P
Sbjct: 135 SGETLKKYAGLTDLELWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERP 194

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+SR REFHGMS RLVKAMPSL FT+ +EDNCTS TCAICLEDY+VGEKLRILPCRHKFH
Sbjct: 195 RSSRVREFHGMSSRLVKAMPSLTFTSALEDNCTSTTCAICLEDYTVGEKLRILPCRHKFH 254

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTP-LLSSSPASSSILSSIRSSLASSS 240
           AFCVDSWLT+WRTFCPVCKRDARTSTGEPPA+ESTP L S+  + +S          +S+
Sbjct: 255 AFCVDSWLTTWRTFCPVCKRDARTSTGEPPATESTPLLSSNPSSLASSSMLSSFRSGTST 314

Query: 241 ALHIPPSMSHSPSVSHIHSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSY 300
           A+ I P  S +PSVS+I S++STPY  QSLRSY  SP I++S+SS DLR+ SS RS  S+
Sbjct: 315 AIQITP--SRTPSVSYIPSLSSTPYAQQSLRSYRHSPSITLSQSSADLRNMSSLRSRASF 372

Query: 301 IMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASA 360
           ++S HS+GYPSISPLN+RYMS Y+PSPSNASPSLV SSS Q  PLH SESA SFSPFASA
Sbjct: 373 LVSPHSLGYPSISPLNTRYMSAYIPSPSNASPSLV-SSSRQPRPLHCSESAASFSPFASA 431

Query: 361 QSLPEC 366
            SLP+C
Sbjct: 432 HSLPDC 437

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081075|emb|CBI18269.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 288/369 (78%), Positives = 312/369 (84%), Gaps = 27/369 (7%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS FVL +RGGC FEDKVRNAQKAGF AAIVYDNED GVLVAMAGNSAGIKIHAVFVSKA
Sbjct: 63  SSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIKIHAVFVSKA 122

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SG  L+ YAGS DME+WIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRR+ P
Sbjct: 123 SGMVLQTYAGSPDMELWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRQRP 182

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R SR REFHGMS RLVKAMPSLIFT V+EDNCTSRTCAICLEDY+VGEKLRILPCRHKFH
Sbjct: 183 RVSRVREFHGMSSRLVKAMPSLIFTTVLEDNCTSRTCAICLEDYNVGEKLRILPCRHKFH 242

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS---SSILSSIRSSLAS 238
           AFCVDSWLTSWRTFCPVCKRDARTSTG+PP SESTPLLSSSP S   SS++SS+RSSLAS
Sbjct: 243 AFCVDSWLTSWRTFCPVCKRDARTSTGDPP-SESTPLLSSSPGSLAPSSLVSSVRSSLAS 301

Query: 239 SSALHIPPSMSHSPSVSHI--HSVASTPYIPQSLRSYCQSPPISVSRSSLDLRHASSQRS 296
           SSA+HI PS S S S+S    +S+++TPYI Q                     +ASSQRS
Sbjct: 302 SSAIHIAPSPSPSHSLSVSRNNSLSATPYIQQ---------------------NASSQRS 340

Query: 297 HGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSP 356
           H SY++S HS+GYPS+SPLNSRY+SPY+PSPSNAS S VGSSS   HPLHYSESATSFSP
Sbjct: 341 HASYLVSPHSMGYPSLSPLNSRYLSPYIPSPSNASLSYVGSSSRPPHPLHYSESATSFSP 400

Query: 357 FASAQSLPE 365
           + SAQSLPE
Sbjct: 401 YTSAQSLPE 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535715|ref|XP_003536389.1| PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Glycine max]

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 282/394 (71%), Positives = 314/394 (79%), Gaps = 30/394 (7%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS F L +RGGCSFE+KVR AQKAGF+A IVYDNED G+LVAMAGNSAGIKIHAVFVSKA
Sbjct: 77  SSPFALVVRGGCSFEEKVRRAQKAGFKAVIVYDNEDGGILVAMAGNSAGIKIHAVFVSKA 136

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SGE L +YAG T++EIW+IP+FENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRE P
Sbjct: 137 SGEILSKYAGLTNVEIWLIPTFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERP 196

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           RA   REFHGMS RLVKAMPSLIFTAV+EDNCTSRTCAICLEDY VGEKLRILPC HKFH
Sbjct: 197 RAPLVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFH 256

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS---------------S 226
           A CVDSWLTSWRTFCPVCKRDAR+   +PP SESTPLLSS+PAS               S
Sbjct: 257 AACVDSWLTSWRTFCPVCKRDARSGLTDPPPSESTPLLSSTPASMASSVLSSARSSLASS 316

Query: 227 SILSSIRSSLASSSAL-------------HIPPSMSHSPSVSHIHSVASTPYIPQSLR-S 272
           S +   R++  +SSAL              I  + S +PSVS  HS+ASTPY+  SLR S
Sbjct: 317 SAIQIARTASMASSALPSARSSLASSSAIQIARAASQTPSVSRNHSIASTPYVQPSLRSS 376

Query: 273 YCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASP 332
           Y QSP +S+SRSS+DLR+A SQRS  S++ S  S+GYPS+S LNSRYMSP++PSPSNAS 
Sbjct: 377 YHQSPSLSISRSSVDLRNA-SQRSLASHLNSPRSMGYPSLSSLNSRYMSPHIPSPSNASV 435

Query: 333 SLVGSSSHQQHPLHYSESATSFSPFASAQSLPEC 366
           S +GSSSHQQHPL YSESA SFSPFAS  SLPEC
Sbjct: 436 SYMGSSSHQQHPLRYSESAASFSPFASTHSLPEC 469

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528049|ref|XP_004171019.1| PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/377 (72%), Positives = 313/377 (83%), Gaps = 14/377 (3%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS F L +RGGCSFEDKVR AQ AGF+AAI+YDNED G L+AMAG+SAGI+IHAVFV+K 
Sbjct: 89  SSPFALIVRGGCSFEDKVRRAQVAGFKAAIIYDNEDGG-LIAMAGSSAGIRIHAVFVTKT 147

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SGE LK+YAG  ++EIWI+PSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRR  P
Sbjct: 148 SGETLKKYAGLANVEIWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGRP 207

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+S  +EF GMSRR+VKAMPSLIFT  +EDNCTS TCAICLEDY+ GEKLRILPCRHKFH
Sbjct: 208 RSSHTQEFRGMSRRVVKAMPSLIFTTALEDNCTSMTCAICLEDYTPGEKLRILPCRHKFH 267

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLL---SSSPASSSILSSIRSSLAS 238
           A CVDSWLT+WRTFCPVCKRDARTSTG+PP S STPLL    SS ASSSILSS RSSL  
Sbjct: 268 ALCVDSWLTAWRTFCPVCKRDARTSTGDPPPSASTPLLSSAPSSVASSSILSSSRSSLPP 327

Query: 239 SSALHIPPSMSHSPSVSHIHSVASTPYIPQSL-RSYCQSPPISVSR--------SSLDLR 289
           SSA+ I P++  SPSVS  HS++STPY+ QSL  SY QSP  S  +        SS++LR
Sbjct: 328 SSAIQISPAL-RSPSVSRNHSLSSTPYLHQSLISSYHQSPRSSYHQSPSLSVSRSSVELR 386

Query: 290 HASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSE 349
           +ASSQRS+ S+++S +S  YPS+SPL+SRYM P++PSPSNASPS++GSSSHQ +PLH S 
Sbjct: 387 NASSQRSYTSHLISPYSSCYPSVSPLHSRYMIPHIPSPSNASPSIIGSSSHQHNPLHCSG 446

Query: 350 SATSFSPFASAQSLPEC 366
           SA S SPFAS +SLPEC
Sbjct: 447 SAASLSPFASTRSLPEC 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441754|ref|XP_004138647.1| PREDICTED: E3 ubiquitin-protein ligase RNF167-like [Cucumis sativus]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 272/377 (72%), Positives = 313/377 (83%), Gaps = 14/377 (3%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           SS F L +RGGCSFEDKVR AQ AGF+AAI+YDNED G L+AMAG+SAGI+IHAVFV+K 
Sbjct: 77  SSPFALIVRGGCSFEDKVRRAQVAGFKAAIIYDNEDGG-LIAMAGSSAGIRIHAVFVTKT 135

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           SGE LK+YAG  ++EIWI+PSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRR  P
Sbjct: 136 SGETLKKYAGLANVEIWIVPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRGRP 195

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+S  +EF GMSRR+VKAMPSLIFT  +EDNCTS TCAICLEDY+ GEKLRILPCRHKFH
Sbjct: 196 RSSHTQEFRGMSRRVVKAMPSLIFTTALEDNCTSMTCAICLEDYTPGEKLRILPCRHKFH 255

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLL---SSSPASSSILSSIRSSLAS 238
           A CVDSWLT+WRTFCPVCKRDARTSTG+PP S STPLL    SS ASSSILSS RSSL  
Sbjct: 256 ALCVDSWLTAWRTFCPVCKRDARTSTGDPPPSASTPLLSSAPSSVASSSILSSSRSSLPP 315

Query: 239 SSALHIPPSMSHSPSVSHIHSVASTPYIPQSL-RSYCQSPPISVSR--------SSLDLR 289
           SSA+ I P++  SPSVS  HS++STPY+ QSL  SY QSP  S  +        SS++LR
Sbjct: 316 SSAIQISPAL-RSPSVSRNHSLSSTPYLHQSLISSYHQSPRSSYHQSPSLSVSRSSVELR 374

Query: 290 HASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSE 349
           +ASSQRS+ S+++S +S  YPS+SPL+SRYM P++PSPSNASPS++GSSSHQ +PLH S 
Sbjct: 375 NASSQRSYTSHLISPYSSCYPSVSPLHSRYMIPHIPSPSNASPSIIGSSSHQHNPLHCSG 434

Query: 350 SATSFSPFASAQSLPEC 366
           SA S SPFAS +SLPEC
Sbjct: 435 SAASLSPFASTRSLPEC 451

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6942149|gb|AAF32326.1|AF218808_1 ReMembR-H2 protein JR702 [Arabidopsis thaliana]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/375 (69%), Positives = 306/375 (81%), Gaps = 12/375 (3%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           +S FVL +RGGCSFE+KVR AQ+AGF+AAI+YDNED G L+AMAGNS GI+IHAVFV+K 
Sbjct: 72  TSPFVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIRIHAVFVTKE 131

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           +GE LK+YAG  D ++W+IPSFENSAWSIMA+SFISLLAMSAVLATCFFVRRHRIRR   
Sbjct: 132 TGEVLKEYAGFPDTKVWLIPSFENSAWSIMAVSFISLLAMSAVLATCFFVRRHRIRRRTS 191

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+SR REFHGMSRRLVKAMPSLIF++  EDN T+ TCAICLEDY+VG+KLR+LPC HKFH
Sbjct: 192 RSSRVREFHGMSRRLVKAMPSLIFSSFHEDNTTAFTCAICLEDYTVGDKLRLLPCCHKFH 251

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSA 241
           A CVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS  A+SS  SS   S   SSA
Sbjct: 252 AACVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS--AASSFTSSSLHSSVRSSA 309

Query: 242 LHIPPSMSHSP-SVSHIHSVASTPYIPQSLRSYC--QSPPISVSRSSLDLR-------HA 291
           L I PS+   P S+S   + AS+ YI QS +S    +SPPISVSRSS+DLR        +
Sbjct: 310 LLIGPSLGSLPTSISFSPAYASSSYIRQSFQSSSNRRSPPISVSRSSVDLRQQAASPSPS 369

Query: 292 SSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESA 351
            SQRS+ S++ S  S+GYP+ISP N+RYMSPY PSPSNASP++ GSS++  +PL YSESA
Sbjct: 370 PSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRYSESA 429

Query: 352 TSFSPFASAQSLPEC 366
            +FSP+ASA SLP+C
Sbjct: 430 GTFSPYASANSLPDC 444

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330577|ref|NP_177343.2| protease-associated and C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana] gi|17529200|gb|AAL38826.1| unknown protein [Arabidopsis thaliana] gi|22136866|gb|AAM91777.1| unknown protein [Arabidopsis thaliana] gi|332197139|gb|AEE35260.1| protease-associated and C3HC4-type RING finger domain-containing protein [Arabidopsis thaliana]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/375 (69%), Positives = 306/375 (81%), Gaps = 12/375 (3%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           +S FVL +RGGCSFE+KVR AQ+AGF+AAI+YDNED G L+AMAGNS GI+IHAVFV+K 
Sbjct: 76  TSPFVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIRIHAVFVTKE 135

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           +GE LK+YAG  D ++W+IPSFENSAWSIMA+SFISLLAMSAVLATCFFVRRHRIRR   
Sbjct: 136 TGEVLKEYAGFPDTKVWLIPSFENSAWSIMAVSFISLLAMSAVLATCFFVRRHRIRRRTS 195

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+SR REFHGMSRRLVKAMPSLIF++  EDN T+ TCAICLEDY+VG+KLR+LPC HKFH
Sbjct: 196 RSSRVREFHGMSRRLVKAMPSLIFSSFHEDNTTAFTCAICLEDYTVGDKLRLLPCCHKFH 255

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSA 241
           A CVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS  A+SS  SS   S   SSA
Sbjct: 256 AACVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS--AASSFTSSSLHSSVRSSA 313

Query: 242 LHIPPSMSHSP-SVSHIHSVASTPYIPQSLRSYC--QSPPISVSRSSLDLR-------HA 291
           L I PS+   P S+S   + AS+ YI QS +S    +SPPISVSRSS+DLR        +
Sbjct: 314 LLIGPSLGSLPTSISFSPAYASSSYIRQSFQSSSNRRSPPISVSRSSVDLRQQAASPSPS 373

Query: 292 SSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESA 351
            SQRS+ S++ S  S+GYP+ISP N+RYMSPY PSPSNASP++ GSS++  +PL YSESA
Sbjct: 374 PSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRYSESA 433

Query: 352 TSFSPFASAQSLPEC 366
            +FSP+ASA SLP+C
Sbjct: 434 GTFSPYASANSLPDC 448

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324534|gb|AAG52220.1|AC021665_3 unknown protein; 70660-72219 [Arabidopsis thaliana]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/375 (69%), Positives = 306/375 (81%), Gaps = 12/375 (3%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           +S FVL +RGGCSFE+KVR AQ+AGF+AAI+YDNED G L+AMAGNS GI+IHAVFV+K 
Sbjct: 52  TSPFVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIRIHAVFVTKE 111

Query: 62  SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAP 121
           +GE LK+YAG  D ++W+IPSFENSAWSIMA+SFISLLAMSAVLATCFFVRRHRIRR   
Sbjct: 112 TGEVLKEYAGFPDTKVWLIPSFENSAWSIMAVSFISLLAMSAVLATCFFVRRHRIRRRTS 171

Query: 122 RASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
           R+SR REFHGMSRRLVKAMPSLIF++  EDN T+ TCAICLEDY+VG+KLR+LPC HKFH
Sbjct: 172 RSSRVREFHGMSRRLVKAMPSLIFSSFHEDNTTAFTCAICLEDYTVGDKLRLLPCCHKFH 231

Query: 182 AFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSA 241
           A CVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS  A+SS  SS   S   SSA
Sbjct: 232 AACVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSS--AASSFTSSSLHSSVRSSA 289

Query: 242 LHIPPSMSHSP-SVSHIHSVASTPYIPQSLRSYC--QSPPISVSRSSLDLR-------HA 291
           L I PS+   P S+S   + AS+ YI QS +S    +SPPISVSRSS+DLR        +
Sbjct: 290 LLIGPSLGSLPTSISFSPAYASSSYIRQSFQSSSNRRSPPISVSRSSVDLRQQAASPSPS 349

Query: 292 SSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESA 351
            SQRS+ S++ S  S+GYP+ISP N+RYMSPY PSPSNASP++ GSS++  +PL YSESA
Sbjct: 350 PSQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRYSESA 409

Query: 352 TSFSPFASAQSLPEC 366
            +FSP+ASA SLP+C
Sbjct: 410 GTFSPYASANSLPDC 424

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2016044	448	AT1G71980 [Arabidopsis thalian	0.983	0.812	0.593	1.2e-111
TAIR|locus:2133697	448	AT4G09560 [Arabidopsis thalian	0.554	0.457	0.609	2.8e-80
TAIR|locus:2199665	422	AT1G22670 [Arabidopsis thalian	0.551	0.483	0.585	1.4e-78
TAIR|locus:2014726	318	AT1G35630 [Arabidopsis thalian	0.548	0.638	0.549	4e-58
TAIR|locus:2156872	310	RMR1 "receptor homology region	0.543	0.648	0.456	5.7e-43
TAIR|locus:2824666	201	AT1G35625 "AT1G35625" [Arabido	0.437	0.805	0.509	1.7e-41
FB|FBgn0037442	536	CG10277 [Drosophila melanogast	0.532	0.367	0.355	6e-27
UNIPROTKB|F1NA38	380	RNF13 "E3 ubiquitin-protein li	0.529	0.515	0.331	1.4e-23
UNIPROTKB|F1NUJ3	272	RNF13 "E3 ubiquitin-protein li	0.529	0.720	0.331	1.4e-23
UNIPROTKB|Q90972	381	RNF13 "E3 ubiquitin-protein li	0.529	0.514	0.331	1.4e-23

TAIR|locus:2016044 AT1G71980 [Arabidopsis thaliana (taxid:3702)]

 Score = 1102 (393.0 bits), Expect = 1.2e-111, P = 1.2e-111
 Identities = 222/374 (59%), Positives = 261/374 (69%)

Query:     2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
             +S FVL +RGGCSFE+KVR AQ+AGF+AAI+YDNED G L+AMAGNS GI+IHAVFV+K 
Sbjct:    76 TSPFVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIRIHAVFVTKE 135

Query:    62 SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXXX 121
             +GE LK+YAG  D ++W+IPSFENSAWSIMA+SFISLLAMSAVLATCFFV          
Sbjct:   136 TGEVLKEYAGFPDTKVWLIPSFENSAWSIMAVSFISLLAMSAVLATCFFVRRHRIRRRTS 195

Query:   122 XXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
                   EFHGMSRRLVKAMPSLIF++  EDN T+ TCAICLEDY+VG+KLR+LPC HKFH
Sbjct:   196 RSSRVREFHGMSRRLVKAMPSLIFSSFHEDNTTAFTCAICLEDYTVGDKLRLLPCCHKFH 255

Query:   182 AFCVDSWLTSWRTFCPVCKRDARTSTGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 241
             A CVDSWLTSWRTFCPVCKRDARTSTGE                                
Sbjct:   256 AACVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSAASSFTSSSLHSSVRSSALL 315

Query:   242 XXXXXXXXXXXXXXXXXXXXXTPYIPQSLRSYC--QSPPISVSRSSLDLRH--AS----- 292
                                  + YI QS +S    +SPPISVSRSS+DLR   AS     
Sbjct:   316 IGPSLGSLPTSISFSPAYASSS-YIRQSFQSSSNRRSPPISVSRSSVDLRQQAASPSPSP 374

Query:   293 SQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESAT 352
             SQRS+ S++ S  S+GYP+ISP N+RYMSPY PSPSNASP++ GSS++  +PL YSESA 
Sbjct:   375 SQRSYISHMASPQSLGYPTISPFNTRYMSPYRPSPSNASPAMAGSSNYPLNPLRYSESAG 434

Query:   353 SFSPFASAQSLPEC 366
             +FSP+ASA SLP+C
Sbjct:   435 TFSPYASANSLPDC 448

GO:0005576 "extracellular region" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2133697 AT4G09560 [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 125/205 (60%), Positives = 152/205 (74%)

Query:     1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60
             +S  +VL IRGGCSFEDK+RNAQKAG++AAIVYD ED G LV+MAGN +G+ I+  FVSK
Sbjct:    77 VSPPYVLIIRGGCSFEDKIRNAQKAGYKAAIVYDYEDFGFLVSMAGNPSGVLIYGTFVSK 136

Query:    61 ASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXX 120
             A+GE LK+YAG TD E+W++PSFE SAWSIMAISFISLLAMSAVLATCFFV         
Sbjct:   137 ATGEVLKEYAGRTDFEVWLMPSFETSAWSIMAISFISLLAMSAVLATCFFVRRHRVRRRR 196

Query:   121 XXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKF 180
                    +FH M + ++  MP+ IF  + ++  TS  C ICLE+Y  G+KLRILPC HKF
Sbjct:   197 ILALNGNDFHRMPKSMIIRMPTTIFNGICDEATTSILCCICLENYEKGDKLRILPCHHKF 256

Query:   181 HAFCVDSWLTSWRTFCPVCKRDART 205
             H  CVD WL   ++FCPVCKRDAR+
Sbjct:   257 HVACVDLWLGQRKSFCPVCKRDARS 281

GO:0005576 "extracellular region" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2199665 AT1G22670 [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 123/210 (58%), Positives = 147/210 (70%)

Query:     2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
             +S  VL IRGGCSFE KVRNAQ++GF+AAIVYDN D   L AM G+S GIKI AVFV K 
Sbjct:    78 TSPLVLIIRGGCSFEYKVRNAQRSGFKAAIVYDNVDRNFLSAMGGDSDGIKIQAVFVMKR 137

Query:    62 SGEKLKQYAGSTDMEIWIIP-SFENSAWSIMA-ISFISLLAMSAVLATCFFVXXXXXXXX 119
             +GE LK+YAGS +ME+ ++P + E+S WS+ A I+ I  LA+  V+ TC F         
Sbjct:   138 AGEMLKKYAGSEEMEVMLVPPNTEDSVWSLYASIALILSLAIFCVMVTCVFFYRYCSTIR 197

Query:   120 XXXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHK 179
                     +F+GM RR VKAMPS+ FT    DN T  +CAICLEDY VG+KLR+LPC HK
Sbjct:   198 NSTS----QFNGMCRRTVKAMPSVTFTCAKIDNTTGFSCAICLEDYIVGDKLRVLPCSHK 253

Query:   180 FHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
             FH  CVDSWL SWRTFCPVCKRDART+  E
Sbjct:   254 FHVACVDSWLISWRTFCPVCKRDARTTADE 283

GO:0005576 "extracellular region" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2014726 AT1G35630 [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 112/204 (54%), Positives = 152/204 (74%)

Query:     3 SAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKAS 62
             S++VL + GGCSFE+KVR AQKAG++AAIVY++  D +LV MAGNS+G+ IH + V++AS
Sbjct:    77 SSYVLIVLGGCSFEEKVRKAQKAGYKAAIVYNDGYDELLVPMAGNSSGVDIHGLLVTRAS 136

Query:    63 GEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXXXX 122
             GE LK YA   +M++W+IP F  S+WSIM I+FISLLAMSA+LATCF V           
Sbjct:   137 GEVLKGYADQDEMKLWLIPGFGISSWSIMGITFISLLAMSAILATCFVVRRHQIRQSVRD 196

Query:   123 XXXXXE-FHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
                  +    M R L+++MP+ +++ V+E++ TS TCAIC++DY VGEKLRILPC+HK+H
Sbjct:   197 LPHGGQGLSCMPRDLLQSMPTEVYSGVLEESSTSVTCAICIDDYCVGEKLRILPCKHKYH 256

Query:   182 AFCVDSWLTSWRTFCPVCKRDART 205
             A C+DSWL   R+FCPVCK++ RT
Sbjct:   257 AVCIDSWLGRCRSFCPVCKQNPRT 280

GO:0005576 "extracellular region" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2156872 RMR1 "receptor homology region transmembrane domain ring H2 motif protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 94/206 (45%), Positives = 116/206 (56%)

Query:     2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
             ++ F L IRG CSFEDK+ NAQ +GF+A IVYDN D+  L+ M  N   I + AVFVS  
Sbjct:    81 TTKFALIIRGECSFEDKLLNAQNSGFQAVIVYDNIDNEDLIVMKVNPQDITVDAVFVSNV 140

Query:    62 SGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXXX 121
             +GE L++YA   D E  + P    SAW+++AISF SLL +   L   FF           
Sbjct:   141 AGEILRKYARGRDGECCLNPPDRGSAWTVLAISFFSLLLIVTFLLIAFFAPRHWTQWRGR 200

Query:   122 XXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFH 181
                       +  +LV  +P   FT          TCAICLEDY  GE LR+LPC+H FH
Sbjct:   201 HTRTIR----LDAKLVHTLPCFTFTDSAHHKA-GETCAICLEDYRFGESLRLLPCQHAFH 255

Query:   182 AFCVDSWLTSWRTFCPVCKRDARTST 207
               C+DSWLT W T CPVCK D RT T
Sbjct:   256 LNCIDSWLTKWGTSCPVCKHDIRTET 281

GO:0005576 "extracellular region" evidence=ISM

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000306 "extrinsic to vacuolar membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0010351 "lithium ion transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2824666 AT1G35625 "AT1G35625" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 83/163 (50%), Positives = 114/163 (69%)

Query:    44 MAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSA 103
             MAGNS+G+ IH V V++ SGE LK+Y    +ME+ +IP F  S+WSIMAI+F+SLL +SA
Sbjct:     1 MAGNSSGVYIHGVLVTRTSGEVLKEYTSRAEMELLLIPGFGISSWSIMAITFVSLLVISA 60

Query:   104 VLATCFFVXXXXXXXXXXXXXXXXEFHG-MSRRLVKAMPSLIFTAVVEDNCTSRTCAICL 162
             VLA+ F V                + H  M + L+++MP+ ++T V+E+  TS TCAIC+
Sbjct:    61 VLASYFSVRRHRIRQHVRDLHHGGQGHSRMPKDLLQSMPTEVYTGVLEEGSTSVTCAICI 120

Query:   163 EDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART 205
             +DY VGE LRILPC+HK+HA C+DSWL   R+FCPVCK++ RT
Sbjct:   121 DDYRVGEILRILPCKHKYHAVCIDSWLGRCRSFCPVCKQNPRT 163

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008233 "peptidase activity" evidence=ISS

GO:0008270 "zinc ion binding" evidence=IEA;ISS

FB|FBgn0037442 CG10277 [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 6.0e-27, P = 6.0e-27
 Identities = 75/211 (35%), Positives = 109/211 (51%)

Query:     2 SSAFV-LTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60
             S+ FV L  RG C FE K+R AQ A + A IVY+NE D +    A N  GI+I +VFV  
Sbjct:    86 SAKFVALVARGECVFERKIRVAQNASYSAVIVYNNEGDDLEQMSAENITGIRIPSVFVGH 145

Query:    61 ASGEKLKQYAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXXXXXXX 120
              +G+ L  Y  +   E+ +I + E        I+   +L  S ++  CF +         
Sbjct:   146 TTGKALATYFTT---EVVLIINDELP----FNINTQLILPFSILIGMCFIIMVIYMIYKC 198

Query:   121 XXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSR--TCAICLEDYSVGEKLRILPCRH 178
                      H + + ++K +P L +T   ++N  ++  TC ICLED+   +KLR+LPC H
Sbjct:   199 IREQRRLRRHRLPKSMLKKLPVLRYT---KNNANNKYDTCVICLEDFIEDDKLRVLPCSH 255

Query:   179 KFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
              +H  C+D WLT  R  CP+CKR   T  GE
Sbjct:   256 PYHTHCIDPWLTENRRVCPICKRKVFTK-GE 285

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NA38 RNF13 "E3 ubiquitin-protein ligase RNF13" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 71/214 (33%), Positives = 109/214 (50%)

Query:     2 SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGI----KIHAV 56
             S+AF++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N   I     I +V
Sbjct:    89 STAFIVLIRRLECNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEILKKIDIPSV 147

Query:    57 FVSKASGEKLKQ-YAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXX 115
             F+ +AS   LK+ +       + +IP F +       I F+ ++ +  +L   F +    
Sbjct:   148 FIGEASANSLKEEFTYEKGGHVVLIPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 206

Query:   116 XXXXXXXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                           + + +  +K +P   F    E +     CAICL++Y  G+KLRILP
Sbjct:   207 QDRHRARR------NRLRKDQLKKLPVHKFKKGDEYD----VCAICLDEYEDGDKLRILP 256

Query:   176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
             C H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:   257 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 290

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|F1NUJ3 RNF13 "E3 ubiquitin-protein ligase RNF13" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 71/214 (33%), Positives = 109/214 (50%)

Query:     2 SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGI----KIHAV 56
             S+AF++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N   I     I +V
Sbjct:    48 STAFIVLIRRLECNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEILKKIDIPSV 106

Query:    57 FVSKASGEKLKQ-YAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXX 115
             F+ +AS   LK+ +       + +IP F +       I F+ ++ +  +L   F +    
Sbjct:   107 FIGEASANSLKEEFTYEKGGHVVLIPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 165

Query:   116 XXXXXXXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                           + + +  +K +P   F    E +     CAICL++Y  G+KLRILP
Sbjct:   166 QDRHRARR------NRLRKDQLKKLPVHKFKKGDEYD----VCAICLDEYEDGDKLRILP 215

Query:   176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
             C H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:   216 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 249

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0051865 "protein autoubiquitination" evidence=IEA

UNIPROTKB|Q90972 RNF13 "E3 ubiquitin-protein ligase RNF13" [Gallus gallus (taxid:9031)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 71/214 (33%), Positives = 109/214 (50%)

Query:     2 SSAFVLTIRG-GCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGI----KIHAV 56
             S+AF++ IR   C+F+ KV NAQ+AG++AAIV+ N D   L++M  N   I     I +V
Sbjct:    90 STAFIVLIRRLECNFDIKVLNAQRAGYKAAIVH-NVDSDDLISMGSNDIEILKKIDIPSV 148

Query:    57 FVSKASGEKLKQ-YAGSTDMEIWIIPSFENSAWSIMAISFISLLAMSAVLATCFFVXXXX 115
             F+ +AS   LK+ +       + +IP F +       I F+ ++ +  +L   F +    
Sbjct:   149 FIGEASANSLKEEFTYEKGGHVVLIPEF-SLPLEYYLIPFLIIVGICLILIVIFMITKFV 207

Query:   116 XXXXXXXXXXXXEFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILP 175
                           + + +  +K +P   F    E +     CAICL++Y  G+KLRILP
Sbjct:   208 QDRHRARR------NRLRKDQLKKLPVHKFKKGDEYD----VCAICLDEYEDGDKLRILP 257

Query:   176 CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
             C H +H  CVD WLT  +  CPVCK+    S G+
Sbjct:   258 CSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGD 291

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00009141001 SubName- Full=Chromosome undetermined scaffold_221, whole genome shotgun sequence; (443 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
cd02123	153	cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-a	3e-30
cd00538	126	cd00538, PA, PA: Protease-associated (PA) domain	4e-16
pfam02225	96	pfam02225, PA, PA domain	8e-15
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-14
cd04818	118	cd04818, PA_subtilisin_1, PA_subtilisin_1: Proteas	4e-14
cd02133	143	cd02133, PA_C5a_like, PA_C5a_like: Protease-associ	7e-14
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-12
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	5e-11
cd02125	127	cd02125, PA_VSR, PA_VSR: Protease-associated (PA)	1e-10
cd02130	122	cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-as	2e-10
smart00184	40	smart00184, RING, Ring finger	9e-10
cd02126	126	cd02126, PA_EDEM3_like, PA_EDEM3_like: protease as	3e-09
cd04816	122	cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-	9e-09
cd04813	117	cd04813, PA_1, PA_1: Protease-associated (PA) doma	1e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	6e-08
cd02127	118	cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-	3e-07
cd02132	139	cd02132, PA_GO-like, PA_GO-like: Protease-associat	2e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	2e-06
cd02122	138	cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-a	5e-06
cd02124	129	cd02124, PA_PoS1_like, PA_PoS1_like: Protease-asso	2e-05
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	9e-05
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-04
cd02120	126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	0.002

>gnl|CDD|239038 cd02123, PA_C_RZF_like, PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

 Score =  112 bits (283), Expect = 3e-30
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 5/89 (5%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSA---GIKIHAVFV 58
            S  VL  RG CSFE KVRNAQ+AG++AAIVY++E +  L++M+GN     GI I +VFV
Sbjct: 67  GSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESN-DLISMSGNDQEIKGIDIPSVFV 125

Query: 59  SKASGEKLKQYAGSTDMEIWIIPSFENSA 87
            K++GE LK+YA      + +IP      
Sbjct: 126 GKSTGEILKKYASYEKG-VILIPDLPLKI 153

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 153

>gnl|CDD|238300 cd00538, PA, PA: Protease-associated (PA) domain

 Score = 73.7 bits (181), Expect = 4e-16
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 4   AFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVL--VAMAGNSAGIKIHAVFVSKA 61
             VL  RGGCSF +KV+NAQKAG +A I+Y+N DD      ++   S    I  V +S A
Sbjct: 48  KIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107

Query: 62  SGEKLKQYAGSTD 74
            GE L     +  
Sbjct: 108 DGEALLSLLEAGK 120

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) glutamate carboxypeptidase II (GCPII), vi) yeast aminopeptidase Y, vii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, viii) lactocepin (a cell envelope-associated protease from Lactobacillus paracasei subsp. paracasei NCDO 151), ix) various subtilisin-like proteases such as melon Cucumisin, and x) human TfR (transferrin receptor) 1 and 2. Length = 126

>gnl|CDD|216938 pfam02225, PA, PA domain

 Score = 69.1 bits (169), Expect = 8e-15
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 5  FVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGE 64
           VL  RGGCSF +K  NAQ+AG    I+Y+N+  G+     G+ + + I  VF+S   GE
Sbjct: 36 IVLVRRGGCSFVEKAENAQRAGAAGVIIYNNDTGGLGG-TVGDPSDVTIPVVFISYEDGE 94

Query: 65 KL 66
           L
Sbjct: 95 AL 96

The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 65.9 bits (161), Expect = 4e-14
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
             C ICL+++  GE++ +LPC H FH  C+D WL S  T CP+C+  
Sbjct: 1   DECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNT-CPLCRAP 46

Length = 46

>gnl|CDD|240122 cd04818, PA_subtilisin_1, PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

 Score = 67.7 bits (166), Expect = 4e-14
 Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 10  RGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLK-Q 68
           RG C+F  KV NAQ AG  A IV +N   G  + M G+   I I AV +S+A G+ LK  
Sbjct: 48  RGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAA 107

Query: 69  YAGSTDMEIWI 79
            A    + + +
Sbjct: 108 LAAGGTVTVTL 118

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. Length = 118

>gnl|CDD|239048 cd02133, PA_C5a_like, PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

 Score = 67.7 bits (166), Expect = 7e-14
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 6   VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEK 65
            L  RG  +F +K+ NA+ AG    I+Y+N  DG L+      A + I  VF+SK  GE 
Sbjct: 51  ALIQRGEITFVEKIANAKAAGAVGVIIYNN-VDG-LIPGTLGEA-VFIPVVFISKEDGEA 107

Query: 66  LKQ 68
           LK 
Sbjct: 108 LKA 110

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 143

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 60.9 bits (148), Expect = 2e-12
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            C ICLE++   E + +LPC H F   C+D WL S +  CP+C+  
Sbjct: 1   ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.1 bits (153), Expect = 5e-11
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200
           CAIC+ ++   ++LR+LPC H+FH  CVD WL  +   CPVC+
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCR 368

Length = 374

>gnl|CDD|239040 cd02125, PA_VSR, PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 5   FVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAG-------IKIHAVF 57
            +L  RGGC F  K  NAQ+AG  A +V DN D+ +L       +G       I I +  
Sbjct: 45  ILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPSAL 104

Query: 58  VSKASGEKLKQYAGSTDM 75
           ++KA GEKLK+   + +M
Sbjct: 105 ITKAFGEKLKKAISNGEM 122

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 127

>gnl|CDD|239045 cd02130, PA_ScAPY_like, PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 23/63 (36%), Positives = 30/63 (47%)

Query: 6   VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEK 65
            L  RG C F DK   A  AG  AAI+Y+N   G L    G  +G  +  V +S+  G+ 
Sbjct: 48  ALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKA 107

Query: 66  LKQ 68
           L  
Sbjct: 108 LVA 110

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 53.3 bits (128), Expect = 9e-10
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199
           C ICLE+Y   +   ILPC H F   C+  WL S    CP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|239041 cd02126, PA_EDEM3_like, PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 10  RGGCSFEDKVRNAQKAGFEAAIVYDNE-----DDGVLVAMAGNSAG---IKIHAVFVSKA 61
           RG C F +K R  QKAG    IV DN      D   + AM+G+      + I  VF+   
Sbjct: 48  RGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107

Query: 62  SGEKL 66
            G KL
Sbjct: 108 EGSKL 112

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

>gnl|CDD|240120 cd04816, PA_SaNapH_like, PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

 Score = 52.7 bits (127), Expect = 9e-09
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 1   MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVA-MAGNSAGIKIHAVFVS 59
           +  A VL  RGGC F DK + A   G  A IV +N D G     +   +  +K+    ++
Sbjct: 42  VKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVIT 101

Query: 60  KASGEKLKQYAGS 72
           KA+G  L++  G+
Sbjct: 102 KAAGAALRRRLGA 114

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 122

>gnl|CDD|240117 cd04813, PA_1, PA_1: Protease-associated (PA) domain subgroup 1

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%)

Query: 6   VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAM--AGNSAGIKIHAVFVSKASG 63
            L +RGGC F DKV  AQ+ G +A IV D+E    L+ M   G++  + I A+F S+ S 
Sbjct: 43  ALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102

Query: 64  EKLK 67
             L 
Sbjct: 103 HLLS 106

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuolar sorting receptors such as Pisum sativum BP-80, vi) prostate-specific membrane antigen (PSMA), vii) yeast aminopeptidase Y viii) Vibrio metschnikovii VapT, a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease, ix) various subtilisin-like proteases such as Cucumisin from the juice of melon fruits, and x) human TfR (transferrin receptor) 1 and human TfR2. The proteins listed above belong to other subgroups; relatively little is known about proteins in this subgroup. Length = 117

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199
           C ICLE+    + + ILPC H F + C+ SWL S    CP+C
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|239042 cd02127, PA_hPAP21_like, PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 18/33 (54%), Positives = 20/33 (60%)

Query: 6  VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD 38
           L  RGGCSF  K  NAQKAG  A I+ D  +D
Sbjct: 38 ALIERGGCSFLTKAINAQKAGALAVIITDVNND 70

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 118

>gnl|CDD|239047 cd02132, PA_GO-like, PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 1   MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMA----GNSAGIKIHAV 56
           +S +  L  RG C+F +K + A+  G  A ++ +++++  L  M       S  I I  V
Sbjct: 58  LSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEE--LYKMVCEDNDTSLNISIPVV 115

Query: 57  FVSKASGEKLK 67
            + +++G+ L 
Sbjct: 116 MIPQSAGDALN 126

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 139

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 40/166 (24%), Positives = 67/166 (40%), Gaps = 32/166 (19%)

Query: 124 SRGREFHGMSRRLVKAMPSLIFTAVVEDNCTS-RTCAICLEDY----------SVGEKLR 172
            R RE     RR  K + ++  TA  E    S RTC IC+++            +    +
Sbjct: 256 RRIREHARF-RRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPK 314

Query: 173 ILPCRHKFHAFCVDSWLTSWRTFCPVCKR----DARTS------------TGEPPASEST 216
            LPC H  H  C+ +WL   +T CP+C+R    D  +               + P  ++T
Sbjct: 315 RLPCGHILHLHCLKNWLERQQT-CPICRRPVIFDQSSPTPASPNVRNTQIATQVPNPDNT 373

Query: 217 PLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVAS 262
           P  ++ P    I +S       +S  +  P+ + S   +H   ++S
Sbjct: 374 PTTTAVPG---ITNSSNQGDPQASTFNGVPNANSSGFAAHTQDLSS 416

Length = 491

>gnl|CDD|239037 cd02122, PA_GRAIL_like, PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 13/57 (22%)

Query: 10  RGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-------------VLVAMAGNSAGIKI 53
           RG C+FE+K++ A +    A ++Y+N   G             ++  M  N  G++I
Sbjct: 68  RGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase 1). hGoliath and GRAIL both have the property of self-ubiquitination. hGoliath is expressed in leukocytes; its expression and localization is not modified in leukemia. GREUL1 may play a role in the generation of anterior ectoderm. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 138

>gnl|CDD|239039 cd02124, PA_PoS1_like, PA_PoS1_like: Protease-associated (PA) domain PoS1-like

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 2   SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKA 61
           S   VL  RG C+F  K  NA   G +  ++Y+N          G+ A   I A  V+  
Sbjct: 55  SGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSG--PTDQVGSDAD-SIIAA-VTPE 110

Query: 62  SGEKLKQ--YAGST 73
            GE       AGS 
Sbjct: 111 DGEAWIDALAAGSN 124

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 129

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201
               C ICL+     + + + PC H F   C+  +L   ++ CP+C+ 
Sbjct: 1   EELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKK-KSKCPICRT 45

Length = 45

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 11/53 (20%)

Query: 156  RTCAICLEDYSVGEKL-RILP------CRHKFHAFCVDSWL-TSWRTFCPVCK 200
              CAIC   YSV + + R LP      C++KFH  C+  W  +S R+ CP+C+
Sbjct: 1470 EECAIC---YSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCR 1519

Length = 1525

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 11/54 (20%)

Query: 157 TCAICLEDY--------SVGE--KLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200
            CAIC   +        S G+   +    C H FH  C+  WL + R  CP+C+
Sbjct: 21  VCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKT-RNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 11  GGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYA 70
           G  S   K    + AG    I+ ++  DG+ V    +     + AV V    G  +  Y 
Sbjct: 61  GNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHV----LPAVHVDYEDGTAILSYI 116

Query: 71  GST 73
            ST
Sbjct: 117 NST 119

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
cd02129	120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.67
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.66
cd02127	118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.64
cd04813	117	PA_1 PA_1: Protease-associated (PA) domain subgrou	99.64
cd02123	153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	99.61
cd02125	127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.61
cd02126	126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.61
cd02122	138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.58
cd04817	139	PA_VapT_like PA_VapT_like: Protease-associated dom	99.56
cd02132	139	PA_GO-like PA_GO-like: Protease-associated domain	99.54
cd02130	122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.5
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.5
PF02225	101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.46
cd04816	122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.45
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.41
cd04818	118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.38
cd02124	129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.3
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.26
KOG2442	541	consensus Uncharacterized conserved protein, conta	99.23
cd00538	126	PA PA: Protease-associated (PA) domain. The PA dom	99.23
cd02133	143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.21
PHA02929	238	N1R/p28-like protein; Provisional	99.18
cd04819	127	PA_2 PA_2: Protease-associated (PA) domain subgrou	99.05
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.98
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.97
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.91
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.87
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.86
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.86
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.85
cd04815	134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	98.82
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.8
cd02120	126	PA_subtilisin_like PA_subtilisin_like: Protease-as	98.8
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.78
KOG3920	193	consensus Uncharacterized conserved protein, conta	98.78
PF14634	44	zf-RING_5: zinc-RING finger domain	98.71
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.68
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.68
PHA02926	242	zinc finger-like protein; Provisional	98.65
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.64
cd02128	183	PA_TfR PA_TfR: Protease-associated domain containi	98.63
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.49
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.43
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.4
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.35
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.34
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.33
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.31
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.25
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.18
cd04814	142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	98.09
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.08
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.06
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.04
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.03
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.01
cd04822	151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	98.0
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.96
cd04820	137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	97.96
cd02131	153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	97.92
cd02121	220	PA_GCPII_like PA_GCPII_like: Protease-associated d	97.92
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.86
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.85
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.81
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.73
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.69
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.66
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.61
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.43
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.34
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.29
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.18
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.08
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.05
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	96.98
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.92
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.84
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.68
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	96.6
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	96.57
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	96.44
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.38
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.35
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.33
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.25
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.95
PHA02862	156	5L protein; Provisional	95.93
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.74
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.69
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.62
cd04821	157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	95.49
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.43
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	95.15
COG5152	259	Uncharacterized conserved protein, contains RING a	94.96
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.96
PHA03096	284	p28-like protein; Provisional	94.92
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	94.74
KOG4739	233	consensus Uncharacterized protein involved in syna	94.59
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	94.57
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.5
COG5236	493	Uncharacterized conserved protein, contains RING Z	93.72
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.7
KOG2660	331	consensus Locus-specific chromosome binding protei	93.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.43
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.24
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.09
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.08
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	91.97
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.82
PF04641	260	Rtf2: Rtf2 RING-finger	91.82
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.7
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.59
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	91.46
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.37
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	91.18
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.76
KOG1940	276	consensus Zn-finger protein [General function pred	89.6
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.24
KOG3053	293	consensus Uncharacterized conserved protein [Funct	88.33
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.19
KOG3002	299	consensus Zn finger protein [General function pred	87.49
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	87.39
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	87.35
KOG0298	1394	consensus DEAD box-containing helicase-like transc	85.39
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	85.18
KOG1829	580	consensus Uncharacterized conserved protein, conta	83.69
KOG1609	323	consensus Protein involved in mRNA turnover and st	83.51
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.81
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	82.57
KOG0825	1134	consensus PHD Zn-finger protein [General function	82.1
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	81.39
KOG2195	702	consensus Transferrin receptor and related protein	81.22

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.1e-46  Score=362.50  Aligned_cols=219  Identities=57%  Similarity=0.936  Sum_probs=197.2

Q ss_pred             ceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccccccccccccccc-
Q 017521            3 SAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGSTDMEIWIIP-   81 (370)
Q Consensus         3 ~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~~~vev~L~p-   81 (370)
                      ..+|||+||+|+|++|++|||++|++|+|||||.+.+.++.|.++..++.|+++||+...|+.|.++.+...++++..+ 
T Consensus        80 ~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~l~~~~~~~~~~~~~~~~  159 (348)
T KOG4628|consen   80 SFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGELLSSYAGRTEFECLLIPL  159 (348)
T ss_pred             ceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHHHHHhhcccceeeeeccc
Confidence            5799999999999999999999999999999999888899999999999999999999999999999999888888888 


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccHHHHhccceeeeeeeeeccCCCcccccc
Q 017521           82 SFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAIC  161 (370)
Q Consensus        82 ~~e~s~~sIm~I~fI~ll~i~~vL~~~~~~~r~r~rr~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~IC  161 (370)
                      .++...|.++.+.|+.++++..+++.+|++++++.....+..   ++.+++.++.++++|...|+...+++.. ..|+||
T Consensus       160 ~~~~~~ws~~~~~~i~~l~v~~il~~~f~i~~~~~~~~~r~~---~~~~r~~k~~l~~~p~~~f~~~~~~~~~-~~CaIC  235 (348)
T KOG4628|consen  160 GFDTSPWSILAISLISLLTVVAILVTCFFIYRIRRLIRARNR---LRRNRLIKRLLKKLPVRTFTKGDDEDAT-DTCAIC  235 (348)
T ss_pred             cccCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH---hhhhhhHHHHHhhCCcEEeccccccCCC-ceEEEe
Confidence            889999999999899999999999888888776654433222   4667899999999999999987776654 799999


Q ss_pred             cccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCCCCCCCCCCCCCCCC
Q 017521          162 LEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS  225 (370)
Q Consensus       162 Le~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~~~~~~~~~~~~~~~  225 (370)
                      ||+|+.||++|+|||+|.||..|||+||.++++.||+||+++....+.++..|++|..+..++.
T Consensus       236 lEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~~~~~~e~tp~~~~~~~~  299 (348)
T KOG4628|consen  236 LEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSGSEPVSEDTPLLSQGPSS  299 (348)
T ss_pred             ecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCCCCCccCCCccccCCCCc
Confidence            9999999999999999999999999999998888999999999999999999999988877755

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like

Probab=99.67  E-value=6.3e-17  Score=136.47  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=60.4

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++|+||||+||+|+|.+|++|||++||+|||||||++........++...++||++||++.+|+.|++.++.
T Consensus        43 l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~~~l~~  114 (120)
T cd02129          43 LKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQQTFGD  114 (120)
T ss_pred             cCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHHHHhcc
Confidence            479999999999999999999999999999999987642222223334568999999999999999888874

This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=2.2e-17  Score=155.46  Aligned_cols=52  Identities=40%  Similarity=1.052  Sum_probs=47.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      .+.+|+|||++|..+|++++|||+|.||..|+++|+...+..||+||.++++
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4579999999999999999999999999999999999766669999998864

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)

Probab=99.64  E-value=2.9e-16  Score=132.51  Aligned_cols=74  Identities=34%  Similarity=0.443  Sum_probs=62.9

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCC--cceeeccCC--CCCceeeEEEEeccccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDD--GVLVAMAGN--SAGIKIHAVFVSKASGEKLKQYAGSTD   74 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~--~~~~~m~g~--~~~i~IpvVfIs~~~Ge~L~k~l~~~~   74 (370)
                      ++|+||||+||+|+|.+|+++||++||+||||||+.++  .....|.++  ...++||+++|++.+|+.|++.+....
T Consensus        33 ~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~L~~~l~~g~  110 (118)
T cd02127          33 INGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYMIRKTLERLG  110 (118)
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999998654  234556655  346789999999999999998887654

This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1

Probab=99.64  E-value=3.6e-16  Score=131.79  Aligned_cols=72  Identities=36%  Similarity=0.533  Sum_probs=62.3

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeecc--CCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMA--GNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~--g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++||||||+||+|+|.+|++|||++||++|||||+.+...+..|.  +....++||+++|++.+|+.|+.++++
T Consensus        38 l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L~~l~~~  111 (117)
T cd04813          38 IDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLLSSLLPK  111 (117)
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHHHHhccc
Confidence            579999999999999999999999999999999987754455565  334567999999999999999988876

A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like

Probab=99.61  E-value=1.2e-15  Score=134.58  Aligned_cols=74  Identities=54%  Similarity=0.847  Sum_probs=64.3

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCC---CceeeEEEEecccccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSA---GIKIHAVFVSKASGEKLKQYAGSTDM   75 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~---~i~IpvVfIs~~~Ge~L~k~l~~~~v   75 (370)
                      +.++||||+||+|+|.+|++|||++||+||||||++++ ....|.++..   .++||+++|++.+|+.|++.+.....
T Consensus        66 ~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~-~~~~m~~~~~~~~~v~IP~v~Is~~dg~~L~~~l~~~~~  142 (153)
T cd02123          66 SGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESN-DLISMSGNDQEIKGIDIPSVFVGKSTGEILKKYASYEKG  142 (153)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCC-cceeccCCCCCCcCCEEEEEEeeHHHHHHHHHHHhcCCc
Confidence            36899999999999999999999999999999998775 4566766554   68999999999999999998877544

This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)

Probab=99.61  E-value=7.7e-16  Score=131.60  Aligned_cols=70  Identities=40%  Similarity=0.534  Sum_probs=59.1

Q ss_pred             CceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccC--------CCCCceeeEEEEeccccccccccccc
Q 017521            2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG--------NSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         2 ~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g--------~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      .++||||+||+|+|.+|++|||++||+||||||++++ .+..|..        ...+++||++||++.+|+.|++.+..
T Consensus        42 ~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~-~~~~m~~~~~~~~~~~~~~i~IP~v~Is~~~G~~L~~~l~~  119 (127)
T cd02125          42 RPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDE-PLLTMDTPEESGSADYIEKITIPSALITKAFGEKLKKAISN  119 (127)
T ss_pred             CceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCC-ccccccCcccccccccCCCceEeEEEECHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999998775 3344432        22457899999999999999988765

This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins

Probab=99.61  E-value=9.7e-16  Score=130.81  Aligned_cols=72  Identities=32%  Similarity=0.517  Sum_probs=61.8

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCc-----ceeeccCCC---CCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG-----VLVAMAGNS---AGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~-----~~~~m~g~~---~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++||||||+||+|+|.+|+++||++||+||||||+.++.     .+..|.++.   ..+.||+++|++.+|+.|+..+..
T Consensus        39 ~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~dG~~L~~~l~~  118 (126)
T cd02126          39 VKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSKEGSKLLAAIKE  118 (126)
T ss_pred             cCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHHHHHHHHHHHHh
Confidence            469999999999999999999999999999999876542     355666654   367999999999999999988765

This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like

Probab=99.58  E-value=2.2e-15  Score=130.48  Aligned_cols=71  Identities=23%  Similarity=0.390  Sum_probs=60.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCC-CcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED-DGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~-~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      +.++||||+||+|+|.+|++|||++||++|||||+++ ......|..+. ...||+++|++.+|+.|++.+..
T Consensus        59 ~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~-~~~ip~v~Is~~~G~~l~~~l~~  130 (138)
T cd02122          59 GEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPG-TGDIVAIMITNPKGMEILELLER  130 (138)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCC-CCcceEEEEcHHHHHHHHHHHHc
Confidence            3689999999999999999999999999999999987 33456665443 34789999999999999998865

This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530

Probab=99.56  E-value=4.4e-15  Score=128.49  Aligned_cols=72  Identities=36%  Similarity=0.430  Sum_probs=61.1

Q ss_pred             CCceEEEEEcCCCC-----hHHHHHHHHHcCCcEEEEeccCCC-cceeeccCCCC-CceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCS-----FEDKVRNAQKAGFEAAIVYDNEDD-GVLVAMAGNSA-GIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~Cs-----F~~Kv~nAq~aGA~avIVyn~~~~-~~~~~m~g~~~-~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++|||+||+||+|+     |.+|+++|+++||+|||||||++. +.+..+.++.. .+.||+++|++.+|+.|+..++.
T Consensus        55 ~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~~l~~  133 (139)
T cd04817          55 MAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLAALGQ  133 (139)
T ss_pred             cCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHHHhcC
Confidence            57999999999999     999999999999999999999843 23344555443 67999999999999999988765

This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10

Probab=99.54  E-value=6.7e-15  Score=127.72  Aligned_cols=71  Identities=25%  Similarity=0.514  Sum_probs=59.7

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCC----CCCceeeEEEEecccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGN----SAGIKIHAVFVSKASGEKLKQYAGST   73 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~----~~~i~IpvVfIs~~~Ge~L~k~l~~~   73 (370)
                      ++|+||||+||+|+|.+|++|||++||++|||||+.+.  +..|.+.    ...+.||+++|++.+|+.|++.+...
T Consensus        58 ~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~--~~~~~~~~~~~~~~~~IP~v~Is~~~G~~L~~~l~~g  132 (139)
T cd02132          58 LSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEE--LYKMVCEDNDTSLNISIPVVMIPQSAGDALNKSLDQG  132 (139)
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCc--ccccccCCCCCCCCCcEeEEEecHHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999998764  3445432    12478999999999999999888763

This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)

Probab=99.50  E-value=2.4e-14  Score=121.26  Aligned_cols=72  Identities=32%  Similarity=0.457  Sum_probs=60.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++||||||+||+|+|.+|++||+++||++|||||+...+....+.+......||+++|++.+|+.|++.+..
T Consensus        43 ~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~~l~~  114 (122)
T cd02130          43 VAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVAALAN  114 (122)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHHHHhc
Confidence            579999999999999999999999999999999987433333344444467899999999999999988765

This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.50  E-value=7.7e-15  Score=102.31  Aligned_cols=44  Identities=48%  Similarity=1.140  Sum_probs=39.4

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK  200 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR  200 (370)
                      ++|+||+++|..++.+..|+|+|+||.+||..|++.+. +||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~-~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN-SCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS-B-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC-cCCccC
Confidence            36999999999999999999999999999999999955 699997

...

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []

Probab=99.46  E-value=5.3e-14  Score=114.15  Aligned_cols=69  Identities=41%  Similarity=0.633  Sum_probs=53.5

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQY   69 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~   69 (370)
                      ++||||||+||+|+|.+|+++||++||+||||||..+...............||+++|++.+|+.|+++
T Consensus        32 ~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~~~  100 (101)
T PF02225_consen   32 VKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALLAY  100 (101)
T ss_dssp             CTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHHHH
T ss_pred             ccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhhcc
Confidence            589999999999999999999999999999999932222222222334467899999999999999765

The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)

Probab=99.45  E-value=1e-13  Score=117.46  Aligned_cols=73  Identities=34%  Similarity=0.536  Sum_probs=60.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCC-CCceeeEEEEecccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNS-AGIKIHAVFVSKASGEKLKQYAGST   73 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~-~~i~IpvVfIs~~~Ge~L~k~l~~~   73 (370)
                      ++||||||+||+|+|.+|++||+++||+|+||||+++......+..+. ....||+++|++.+|+.|+++++..
T Consensus        42 ~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~~~l~~g  115 (122)
T cd04816          42 VKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALRRRLGAG  115 (122)
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHHHHHcCC
Confidence            579999999999999999999999999999999987743332232222 4567999999999999999988764

This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=9.4e-13  Score=127.29  Aligned_cols=74  Identities=27%  Similarity=0.683  Sum_probs=53.8

Q ss_pred             cHHHHhccceeeeeeeeeccCCCcccccccccc-cCC---------CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521          133 SRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDY-SVG---------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD  202 (370)
Q Consensus       133 ~~~~~~~lp~~~~~~~~~~~~~~~~C~ICLe~~-~~~---------~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~  202 (370)
                      .+++.+.+++...++.   ..++..|.||+|++ ..+         .+-+.|||||+||.+|++.|++++++ ||+||.+
T Consensus       268 ~kdl~~~~~t~t~eql---~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQT-CPICr~p  343 (491)
T COG5243         268 TKDLNAMYPTATEEQL---TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQT-CPICRRP  343 (491)
T ss_pred             hhHHHhhcchhhhhhh---cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccC-CCcccCc
Confidence            3455555665543333   33568999999994 433         13478999999999999999999776 9999999


Q ss_pred             -cccCCCCC
Q 017521          203 -ARTSTGEP  210 (370)
Q Consensus       203 -i~~~~~~~  210 (370)
                       +.++..+.
T Consensus       344 ~ifd~~~~~  352 (491)
T COG5243         344 VIFDQSSPT  352 (491)
T ss_pred             cccccCCCC
Confidence             55555543

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1

Probab=99.38  E-value=8.2e-13  Score=111.14  Aligned_cols=77  Identities=36%  Similarity=0.538  Sum_probs=64.1

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc-ccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS-TDMEI   77 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~-~~vev   77 (370)
                      ++||||||+||+|+|.+|+++|+++||+|+||||+.+......|.++.....||+++|++.+|+.|++++.. ..+.+
T Consensus        39 v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~l~~g~~v~v  116 (118)
T cd04818          39 FAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAALAAGGTVTV  116 (118)
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHHHhcCCcEEE
Confidence            579999999999999999999999999999999988754444555544456799999999999999999875 34443

A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like

Probab=99.30  E-value=2.8e-12  Score=109.90  Aligned_cols=68  Identities=28%  Similarity=0.396  Sum_probs=53.4

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++|+||||+||+|+|.+|++||+++||++|||||+++.. +. +.+... ..++.+++ +.+|+.|++.+..
T Consensus        54 ~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~-~~-~~~~~~-~~~~~~~~-~~~G~~l~~~l~~  121 (129)
T cd02124          54 LSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGP-TD-QVGSDA-DSIIAAVT-PEDGEAWIDALAA  121 (129)
T ss_pred             ccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCc-cc-ccCCCC-cceeeEEe-HHHHHHHHHHHhc
Confidence            479999999999999999999999999999999987652 22 223222 23555555 9999999988765

This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.26  E-value=6.5e-12  Score=97.20  Aligned_cols=45  Identities=36%  Similarity=0.846  Sum_probs=35.4

Q ss_pred             CcccccccccccC----------CCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521          155 SRTCAICLEDYSV----------GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK  200 (370)
Q Consensus       155 ~~~C~ICLe~~~~----------~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR  200 (370)
                      ++.|+||+++|..          +-.+...+|+|.||..||.+||+.++ +||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            4569999999933          23456668999999999999999855 699998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=99.23  E-value=1.6e-11  Score=122.67  Aligned_cols=106  Identities=27%  Similarity=0.456  Sum_probs=73.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccC---CCCCceeeEEEEecccccccccccc-ccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAG---NSAGIKIHAVFVSKASGEKLKQYAG-STDME   76 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g---~~~~i~IpvVfIs~~~Ge~L~k~l~-~~~ve   76 (370)
                      +++++++|.||+|.|.+|+++||++||.|++|.||..+ .+.+..+   ...++.||++||.+++|+.+.+... ...++
T Consensus        94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d-~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~  172 (541)
T KOG2442|consen   94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKD-LLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVE  172 (541)
T ss_pred             ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchh-hccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEE
Confidence            47899999999999999999999999999999998654 2222222   2357899999999999999886433 35667


Q ss_pred             ccccccccccchhHHHHHHHHHHHHHHHHhhhh
Q 017521           77 IWIIPSFENSAWSIMAISFISLLAMSAVLATCF  109 (370)
Q Consensus        77 v~L~p~~e~s~~sIm~I~fI~ll~i~~vL~~~~  109 (370)
                      +.++.+.+....  +.+.||.++++..++..-+
T Consensus       173 ~~lYaPk~P~vD--~~~v~iwlmAVgTVa~ggy  203 (541)
T KOG2442|consen  173 LALYAPKRPAVD--YAMVFIWLMAVGTVACGGY  203 (541)
T ss_pred             EEEECCCCCCcc--HHHHHHHHHHHhHhhccch
Confidence            666544433322  2333444445555544433

>cd00538 PA PA: Protease-associated (PA) domain

Probab=99.23  E-value=1.4e-11  Score=103.64  Aligned_cols=72  Identities=43%  Similarity=0.591  Sum_probs=58.5

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcc-eeeccCC-CCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV-LVAMAGN-SAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~-~~~m~g~-~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++||||||+||+|+|.+|+++|+++||+|+||+|+.+... ...+.++ .....||+++|+..+|+.|++++..
T Consensus        45 ~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~~l~~~~~~  118 (126)
T cd00538          45 VKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGEALLSLLEA  118 (126)
T ss_pred             ccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHHHHHHHHhc
Confidence            5799999999999999999999999999999999876421 2122221 2346799999999999999988865

The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase

Probab=99.21  E-value=1.8e-11  Score=106.57  Aligned_cols=69  Identities=33%  Similarity=0.460  Sum_probs=57.5

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++||||||+||+|.|.+|+++|+++||+||||||+++..  ..+.... ...||+++|++.+|+.|++++..
T Consensus        46 v~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~--~~~~~~~-~~~iP~v~Is~~dG~~L~~~l~~  114 (143)
T cd02133          46 VKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGL--IPGTLGE-AVFIPVVFISKEDGEALKAALES  114 (143)
T ss_pred             ccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCc--ccccCCC-CCeEeEEEecHHHHHHHHHHHhC
Confidence            579999999999999999999999999999999987652  2222111 34699999999999999988865

This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.18  E-value=1.4e-11  Score=115.34  Aligned_cols=73  Identities=27%  Similarity=0.570  Sum_probs=52.1

Q ss_pred             cccHHHHhccceeeeeeeee-ccCCCcccccccccccCCC----eeEE-eCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          131 GMSRRLVKAMPSLIFTAVVE-DNCTSRTCAICLEDYSVGE----KLRI-LPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       131 ~~~~~~~~~lp~~~~~~~~~-~~~~~~~C~ICLe~~~~~~----~v~~-lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +..+.+++.+|.+...-... +...+.+|+||+|.+..++    .+.+ ++|+|.||..||.+|+..+ .+||+||..+.
T Consensus       149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~-~tCPlCR~~~~  227 (238)
T PHA02929        149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK-NTCPVCRTPFI  227 (238)
T ss_pred             chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC-CCCCCCCCEee
Confidence            34667788888765332211 2234689999999987543    1234 4699999999999999974 45999998765

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2

Probab=99.05  E-value=2.7e-10  Score=97.27  Aligned_cols=73  Identities=21%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             CCceEEEEEcCCC--ChHHHHHHHHHcCCcEEEEeccCCCccee-eccCC--CCCceeeEEEEecccccccccccccc
Q 017521            1 MSSAFVLTIRGGC--SFEDKVRNAQKAGFEAAIVYDNEDDGVLV-AMAGN--SAGIKIHAVFVSKASGEKLKQYAGST   73 (370)
Q Consensus         1 l~~~ivLV~RG~C--sF~~Kv~nAq~aGA~avIVyn~~~~~~~~-~m~g~--~~~i~IpvVfIs~~~Ge~L~k~l~~~   73 (370)
                      ++||||||+||.|  +|.+|+++|+++||+||||||+.+..... ...+.  .....||++.|++.+|+.|.+.+...
T Consensus        43 v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g  120 (127)
T cd04819          43 LEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLARVAERN  120 (127)
T ss_pred             CCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHHHHhcC
Confidence            5899999999999  99999999999999999999876553221 11122  22457999999999999999888763

A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.98  E-value=5.4e-10  Score=100.96  Aligned_cols=54  Identities=31%  Similarity=0.618  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---------------CCCCCcccccccccCCCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---------------WRTFCPVCKRDARTSTGEP  210 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---------------~~~~CP~CR~~i~~~~~~~  210 (370)
                      +..+|+||++.+++.   .+++|||.||..||..|+..               .+..||+||.++......+
T Consensus        17 ~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP   85 (193)
T PLN03208         17 GDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP   85 (193)
T ss_pred             CccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence            457999999998654   56889999999999999853               2346999999997755443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.97  E-value=5e-10  Score=76.62  Aligned_cols=45  Identities=42%  Similarity=1.082  Sum_probs=37.1

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA  203 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i  203 (370)
                      +|+||++.+  .+.+..++|+|.||..|++.|+...+..||+||..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            599999998  345566679999999999999997455699998754

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=6.3e-10  Score=102.37  Aligned_cols=54  Identities=30%  Similarity=0.514  Sum_probs=43.5

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc--CCCCCcccccccccCCCC
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTSTGE  209 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i~~~~~~  209 (370)
                      ....+|.||||.-++.   +++.|||+||..||.+||..  +...|||||..|...+-.
T Consensus        45 ~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv  100 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV  100 (230)
T ss_pred             CCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence            4568999999985544   56679999999999999987  335599999998876543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=6.2e-09  Score=109.18  Aligned_cols=53  Identities=36%  Similarity=0.854  Sum_probs=44.9

Q ss_pred             CCcccccccccccCCCe--eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~--v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      .+..|+||+|++..+++  .+.|||+|+||..|+..|+++.++ ||+||..+....
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qt-CP~CR~~~~~~~  344 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQT-CPTCRTVLYDYV  344 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCc-CCcchhhhhccc
Confidence            46899999999988755  689999999999999999999555 999999554443

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.86  E-value=1.8e-09  Score=73.18  Aligned_cols=39  Identities=36%  Similarity=0.997  Sum_probs=33.1

Q ss_pred             cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521          158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C  199 (370)
                      |+||++.+.+  .+..++|||.|+..||.+|++. +..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            8999999775  5688999999999999999999 5679998

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=1.6e-09  Score=102.42  Aligned_cols=49  Identities=33%  Similarity=0.771  Sum_probs=42.2

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|.+|||.....   -.+||||+||..||-.|...+. .||+||....+.+
T Consensus       239 ~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~psk  287 (293)
T KOG0317|consen  239 TRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSK  287 (293)
T ss_pred             CCceEEEecCCCCC---CcCcCcchHHHHHHHHHHcccc-CCCcccccCCCcc
Confidence            47899999998665   6889999999999999999855 4999999877654

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.85  E-value=1.9e-09  Score=77.12  Aligned_cols=47  Identities=30%  Similarity=0.817  Sum_probs=38.1

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +..|.||++....   +..+||||. |+..|+..|+.. +..||+||++|..
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhcC
Confidence            3689999998653   688899999 999999999996 4459999998853

...

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2

Probab=98.82  E-value=3.2e-09  Score=91.55  Aligned_cols=73  Identities=18%  Similarity=0.155  Sum_probs=58.3

Q ss_pred             CCceEEEEEcCCC------ChHHH-------HHHHHHcCCcEEEEeccCCCc---ceeeccCC-CCCceeeEEEEecccc
Q 017521            1 MSSAFVLTIRGGC------SFEDK-------VRNAQKAGFEAAIVYDNEDDG---VLVAMAGN-SAGIKIHAVFVSKASG   63 (370)
Q Consensus         1 l~~~ivLV~RG~C------sF~~K-------v~nAq~aGA~avIVyn~~~~~---~~~~m~g~-~~~i~IpvVfIs~~~G   63 (370)
                      ++||||||.||.|      .|.+|       +.+|+++||.|+|++|+.+..   ...++.+. .....||++.|+..+|
T Consensus        38 v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~  117 (134)
T cd04815          38 VKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDA  117 (134)
T ss_pred             cCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcH
Confidence            5899999999999      99999       799999999999999965331   21233333 3345799999999999


Q ss_pred             cccccccccc
Q 017521           64 EKLKQYAGST   73 (370)
Q Consensus        64 e~L~k~l~~~   73 (370)
                      +.|.+.+...
T Consensus       118 ~~L~r~l~~g  127 (134)
T cd04815         118 DMLERLAARG  127 (134)
T ss_pred             HHHHHHHhCC
Confidence            9998887753

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.2e-09  Score=95.01  Aligned_cols=52  Identities=25%  Similarity=0.586  Sum_probs=42.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ....|+|||+.+.+... .-+.|||+||..||+.-++..++ ||+||..|....
T Consensus       130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~-CP~C~kkIt~k~  181 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNK-CPTCRKKITHKQ  181 (187)
T ss_pred             cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCC-CCCcccccchhh
Confidence            45789999999876422 33679999999999999998665 999999887653

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases

Probab=98.80  E-value=5.6e-09  Score=88.29  Aligned_cols=69  Identities=28%  Similarity=0.354  Sum_probs=57.3

Q ss_pred             CCceEEEEEcCCC-ChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccccccccc
Q 017521            1 MSSAFVLTIRGGC-SFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST   73 (370)
Q Consensus         1 l~~~ivLV~RG~C-sF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~~   73 (370)
                      ++|||||++||.| .|.+|+++|+++||.|+|++|+..+..  .+...  ...||+++|.+.+|+.|++++...
T Consensus        50 v~GkIVlc~~~~~~~~~~k~~~~~~~GA~gvI~~~~~~~~~--~~~~~--~~~iP~v~I~~~~g~~l~~y~~~~  119 (126)
T cd02120          50 VKGKIVLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGL--DVVAD--AHVLPAVHVDYEDGTAILSYINST  119 (126)
T ss_pred             ccccEEEEeCCCCccHHHHHHHHHHcCCcEEEEEecCCCCc--eeccc--ccccceEEECHHHHHHHHHHHHcC
Confidence            5799999999999 999999999999999999998776521  22211  346999999999999999988753

This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.78  E-value=3.7e-09  Score=83.28  Aligned_cols=50  Identities=30%  Similarity=0.822  Sum_probs=38.5

Q ss_pred             CcccccccccccC--------CCe--eEEeCCCCcccHhHHHHHHhcC--CCCCcccccccc
Q 017521          155 SRTCAICLEDYSV--------GEK--LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~--------~~~--v~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~CR~~i~  204 (370)
                      ++.|.||+..|+.        ||.  +..-.|+|.||..||.+||.+.  +..||+||+...
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            5789999998873        333  3333499999999999999963  456999998653

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]

Probab=98.78  E-value=3.7e-09  Score=91.71  Aligned_cols=70  Identities=30%  Similarity=0.384  Sum_probs=57.2

Q ss_pred             CceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCc----ceeeccCCC--CCceeeEEEEecccccccccccc
Q 017521            2 SSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDG----VLVAMAGNS--AGIKIHAVFVSKASGEKLKQYAG   71 (370)
Q Consensus         2 ~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~----~~~~m~g~~--~~i~IpvVfIs~~~Ge~L~k~l~   71 (370)
                      .|.|+||+||+|+|..|.++++++||.++||-|+..+.    ..+.|..|.  ...+||++|+...+|-.++..+.
T Consensus        87 ~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fllg~~Gy~ir~sL~  162 (193)
T KOG3920|consen   87 PDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLLGVTGYYIRVSLK  162 (193)
T ss_pred             CCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEeccceEEEehhHH
Confidence            57899999999999999999999999999998875432    256777654  35789999999999977665443

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.71  E-value=9.9e-09  Score=71.47  Aligned_cols=44  Identities=32%  Similarity=0.831  Sum_probs=37.6

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR  201 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~  201 (370)
                      .|.||+++|...+..++|+|||+|+..|++.+... ...||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~-~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK-SVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC-CCCCcCCCC
Confidence            49999999966677899999999999999998833 456999985

>smart00184 RING Ring finger

Probab=98.68  E-value=1.5e-08  Score=66.75  Aligned_cols=39  Identities=44%  Similarity=1.125  Sum_probs=32.9

Q ss_pred             cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521          158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C  199 (370)
                      |+||++..   +....++|+|.||..|++.|+...+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            78999983   4568889999999999999998545569987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.68  E-value=1.1e-08  Score=69.80  Aligned_cols=40  Identities=43%  Similarity=1.035  Sum_probs=34.3

Q ss_pred             cccccccccCCCeeEEeCCCCcccHhHHHHHHh-cCCCCCccc
Q 017521          158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT-SWRTFCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~-~~~~~CP~C  199 (370)
                      |+||++.+...  ++.++|+|.|+..||.+|++ .....||+|
T Consensus         1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            89999998754  46889999999999999999 445669998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PHA02926 zinc finger-like protein; Provisional

Probab=98.65  E-value=1.6e-08  Score=92.69  Aligned_cols=52  Identities=29%  Similarity=0.773  Sum_probs=38.5

Q ss_pred             CCcccccccccccCC----C-eeEEe-CCCCcccHhHHHHHHhcCC-----CCCccccccccc
Q 017521          154 TSRTCAICLEDYSVG----E-KLRIL-PCRHKFHAFCVDSWLTSWR-----TFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~----~-~v~~l-pC~H~FH~~Ci~~Wl~~~~-----~~CP~CR~~i~~  205 (370)
                      .+.+|.||||..-.+    + ...+| +|+|.||..||+.|...++     ..||+||....-
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            457999999986322    1 23455 5999999999999998632     349999987654

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.64  E-value=2e-08  Score=69.34  Aligned_cols=39  Identities=33%  Similarity=0.774  Sum_probs=30.2

Q ss_pred             cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC---CCCccc
Q 017521          158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR---TFCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~---~~CP~C  199 (370)
                      |+||++-|++.   ..|+|||.|+..||..|.+..+   ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999876   7799999999999999998743   259987

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)

Probab=98.63  E-value=2.6e-08  Score=90.02  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=34.2

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE   36 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~   36 (370)
                      ++||||||+||+|.|.+|+++|+++||+|||||++.
T Consensus        54 v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp   89 (183)
T cd02128          54 VNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDP   89 (183)
T ss_pred             CCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCH
Confidence            579999999999999999999999999999999874

This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.2e-07  Score=95.26  Aligned_cols=51  Identities=27%  Similarity=0.860  Sum_probs=40.1

Q ss_pred             CcccccccccccCC---Ce-----------eEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVG---EK-----------LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~---~~-----------v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ..+|+||+.++..-   ..           -..+||.|+||..|+.+|+...+-.||+||.++++
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            47899999986531   11           23569999999999999999766569999998764

>smart00504 Ubox Modified RING finger domain

Probab=98.49  E-value=1.3e-07  Score=70.30  Aligned_cols=46  Identities=26%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ..|+||++.+++.   .+++|||+|+..||..|+.. +..||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCCh
Confidence            4699999998875   56799999999999999988 4469999987744

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.5e-08  Score=74.39  Aligned_cols=50  Identities=32%  Similarity=0.838  Sum_probs=38.1

Q ss_pred             CCcccccccccccC--------CCeeEEe--CCCCcccHhHHHHHHhc--CCCCCccccccc
Q 017521          154 TSRTCAICLEDYSV--------GEKLRIL--PCRHKFHAFCVDSWLTS--WRTFCPVCKRDA  203 (370)
Q Consensus       154 ~~~~C~ICLe~~~~--------~~~v~~l--pC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i  203 (370)
                      .++.|-||+..|..        +|.+-.+  .|.|.||..||.+|+..  .+..||+||+..
T Consensus        19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence            45689999999864        3433322  29999999999999986  345699999864

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.40  E-value=2e-07  Score=71.97  Aligned_cols=47  Identities=26%  Similarity=0.737  Sum_probs=33.2

Q ss_pred             cccccccccCCCeeEEe--CCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          158 CAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~l--pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      |+-|...+..++++.+.  .|+|.||..||.+||.. +..||+||+.-.-
T Consensus        34 C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~   82 (88)
T COG5194          34 CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL   82 (88)
T ss_pred             CcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence            33333334455655443  39999999999999999 4559999986543

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=1.4e-07  Score=88.47  Aligned_cols=55  Identities=29%  Similarity=0.733  Sum_probs=43.3

Q ss_pred             cCCCcccccccccccCCC-------eeEEeCCCCcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521          152 NCTSRTCAICLEDYSVGE-------KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDARTS  206 (370)
Q Consensus       152 ~~~~~~C~ICLe~~~~~~-------~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~  206 (370)
                      ..++..|+||-..+...+       +...|.|+|+||..||+.|-.. ++.+||.|+..+.-+
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            345789999998886543       6788999999999999999543 344599999877543

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.34  E-value=2.9e-07  Score=92.30  Aligned_cols=49  Identities=31%  Similarity=0.763  Sum_probs=41.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ....|+||++.|...   .+++|+|.||..||..|+... ..||+||..+...
T Consensus        25 ~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~   73 (397)
T TIGR00599        25 TSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQES   73 (397)
T ss_pred             cccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccc
Confidence            357999999998754   468999999999999999874 4699999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.33  E-value=3.2e-07  Score=63.61  Aligned_cols=39  Identities=38%  Similarity=0.780  Sum_probs=22.7

Q ss_pred             cccccccccCCC-eeEEeCCCCcccHhHHHHHHhcC---CCCCc
Q 017521          158 CAICLEDYSVGE-KLRILPCRHKFHAFCVDSWLTSW---RTFCP  197 (370)
Q Consensus       158 C~ICLe~~~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~---~~~CP  197 (370)
                      |+||+| |...+ .-++|+|||+|+.+||++|+...   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 85543 44789999999999999999863   33476

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.31  E-value=5.1e-07  Score=64.43  Aligned_cols=43  Identities=28%  Similarity=0.770  Sum_probs=33.4

Q ss_pred             ccccccccccCCCeeEEeCCC-----CcccHhHHHHHHhcC-CCCCcccc
Q 017521          157 TCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSW-RTFCPVCK  200 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~~-~~~CP~CR  200 (370)
                      .|.||++.. .++...++||.     |.+|..|+++|+... +..||+|+
T Consensus         1 ~CrIC~~~~-~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            499999943 34455688984     889999999999764 45699995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=4.5e-07  Score=85.07  Aligned_cols=50  Identities=30%  Similarity=0.723  Sum_probs=41.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHH-HHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDS-WLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~-Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +..|+||+|.....   ..++|||+||..||-. |-.++-.+||+||+.+.+++
T Consensus       215 d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         215 DYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            57899999997654   6789999999999999 97775556999999876653

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.18  E-value=6.9e-07  Score=89.09  Aligned_cols=48  Identities=31%  Similarity=0.794  Sum_probs=38.4

Q ss_pred             CCcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +..+|+||||.+... ..++...|.|.||..|+..|-   ..+||+||.-..
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~---~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW---DSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeeecccccchHHHhhcc---cCcChhhhhhcC
Confidence            357999999999765 345666699999999999994   446999998544

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1

Probab=98.09  E-value=4.5e-06  Score=72.65  Aligned_cols=38  Identities=13%  Similarity=0.239  Sum_probs=35.0

Q ss_pred             CCceEEEEEcCCC------------------ChHHHHHHHHHcCCcEEEEeccCCC
Q 017521            1 MSSAFVLTIRGGC------------------SFEDKVRNAQKAGFEAAIVYDNEDD   38 (370)
Q Consensus         1 l~~~ivLV~RG~C------------------sF~~Kv~nAq~aGA~avIVyn~~~~   38 (370)
                      ++||||||.||+|                  +|..|+++|+++||+|||++++.+.
T Consensus        46 VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~~~  101 (142)
T cd04814          46 VKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHELAP  101 (142)
T ss_pred             CCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCCCc
Confidence            5899999999999                  6899999999999999999998653

A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.3e-06  Score=70.78  Aligned_cols=49  Identities=29%  Similarity=0.771  Sum_probs=35.4

Q ss_pred             CCCccccccccccc------------CCCeeEEe--CCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521          153 CTSRTCAICLEDYS------------VGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRD  202 (370)
Q Consensus       153 ~~~~~C~ICLe~~~------------~~~~v~~l--pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~  202 (370)
                      ...+.|+||+..+-            ..+++.+.  -|+|.||..||.+||++++. ||+|.++
T Consensus        44 i~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~v-CPLdn~e  106 (114)
T KOG2930|consen   44 IVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNV-CPLDNKE  106 (114)
T ss_pred             eeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCc-CCCcCcc
Confidence            34568999876532            12334333  39999999999999999665 9999764

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.06  E-value=2e-06  Score=66.44  Aligned_cols=49  Identities=22%  Similarity=0.320  Sum_probs=38.1

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||.+-|.+.   .++||||.|...||..||.++...||+|+..+...
T Consensus         4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~   52 (73)
T PF04564_consen    4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSES   52 (73)
T ss_dssp             GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGG
T ss_pred             ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcc
Confidence            46899999999876   67899999999999999999666799999887764

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.3e-06  Score=86.90  Aligned_cols=56  Identities=27%  Similarity=0.465  Sum_probs=41.6

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC----CCCCcccccccccCCCCCCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW----RTFCPVCKRDARTSTGEPPAS  213 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~----~~~CP~CR~~i~~~~~~~~~~  213 (370)
                      +..|+|||+.....   ..+.|||+||..||-+.+...    -..||+||..|......+...
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence            57899999997654   334499999999998876542    234999999888855544433

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.03  E-value=1.1e-06  Score=93.85  Aligned_cols=53  Identities=30%  Similarity=0.767  Sum_probs=39.2

Q ss_pred             cCCCcccccccccccCCCe----eEEeCCCCcccHhHHHHHHhc-CCCCCcccccccc
Q 017521          152 NCTSRTCAICLEDYSVGEK----LRILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR  204 (370)
Q Consensus       152 ~~~~~~C~ICLe~~~~~~~----v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~  204 (370)
                      -.+.++|+||..-...-|.    -|+-.|.|.||..|+.+|+.. .+.+||+||..++
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3456899999887652220    123338999999999999997 4567999998765

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.01  E-value=5.7e-06  Score=80.19  Aligned_cols=54  Identities=24%  Similarity=0.469  Sum_probs=39.9

Q ss_pred             CCcccccccccc-cCCC-eeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDY-SVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~-~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ++..|+||+.+- -..+ ++.+.+|||.||..||+..+......||.|+..+....
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            346899999973 2322 23333799999999999977665566999998877654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3

Probab=98.00  E-value=8.8e-06  Score=71.61  Aligned_cols=38  Identities=26%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             CCceEEEEEcCC------------------CChHHHHHHHHHcCCcEEEEeccCCC
Q 017521            1 MSSAFVLTIRGG------------------CSFEDKVRNAQKAGFEAAIVYDNEDD   38 (370)
Q Consensus         1 l~~~ivLV~RG~------------------CsF~~Kv~nAq~aGA~avIVyn~~~~   38 (370)
                      ++||||||.||+                  |+|.+|+++|+++||+|||||++...
T Consensus        46 VkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~~  101 (151)
T cd04822          46 VKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPNS  101 (151)
T ss_pred             CCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCcc
Confidence            589999999985                  99999999999999999999987544

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=5e-06  Score=81.25  Aligned_cols=51  Identities=27%  Similarity=0.638  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      ...+|.|||.+-++   +.+|||.|. .|..|.+...-+++ .||+||+++.+...
T Consensus       289 ~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n-~CPICRqpi~~ll~  340 (349)
T KOG4265|consen  289 SGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTN-NCPICRQPIEELLE  340 (349)
T ss_pred             CCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhc-CCCccccchHhhhe
Confidence            46899999998654   589999999 89999998655544 49999999876543

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1

Probab=97.96  E-value=1.2e-05  Score=69.57  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=34.4

Q ss_pred             CCceEEEEEcCCCC------------hHHHHHHHHHcCCcEEEEeccCCC
Q 017521            1 MSSAFVLTIRGGCS------------FEDKVRNAQKAGFEAAIVYDNEDD   38 (370)
Q Consensus         1 l~~~ivLV~RG~Cs------------F~~Kv~nAq~aGA~avIVyn~~~~   38 (370)
                      ++||||||++|.|.            +.+|+++|+++||+|||+|++...
T Consensus        48 VkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~   97 (137)
T cd04820          48 VKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS   97 (137)
T ss_pred             CCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence            58999999999995            889999999999999999987544

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)

Probab=97.92  E-value=1.3e-05  Score=70.11  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNED   37 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~   37 (370)
                      ++|||||++.|+....+|++|||++||.|||||.|-.
T Consensus        39 v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~   75 (153)
T cd02131          39 VTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC   75 (153)
T ss_pred             ccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence            6899999999999999999999999999999998743

This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like

Probab=97.92  E-value=1.3e-05  Score=74.78  Aligned_cols=36  Identities=33%  Similarity=0.420  Sum_probs=34.0

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE   36 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~   36 (370)
                      ++||||||++|+|.+.+|+++|+++||+|||||++.
T Consensus        70 v~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp  105 (220)
T cd02121          70 VKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDP  105 (220)
T ss_pred             CCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCc
Confidence            589999999999999999999999999999999874

This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.86  E-value=6.5e-06  Score=78.15  Aligned_cols=47  Identities=32%  Similarity=0.735  Sum_probs=39.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|-||-+.|...   .+++|||.||.-||...|.. +.+||+||.+-.+
T Consensus        25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~e   71 (391)
T COG5432          25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCE   71 (391)
T ss_pred             HHHhhhhhheeecc---eecccccchhHHHHHHHhcC-CCCCccccccHHh
Confidence            46899999998876   67789999999999999998 5569999986444

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.85  E-value=3.6e-06  Score=64.57  Aligned_cols=50  Identities=26%  Similarity=0.633  Sum_probs=23.8

Q ss_pred             cccccccccccCCCeeEEe-----CCCCcccHhHHHHHHhc----CC------CCCccccccccc
Q 017521          156 RTCAICLEDYSVGEKLRIL-----PCRHKFHAFCVDSWLTS----WR------TFCPVCKRDART  205 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~l-----pC~H~FH~~Ci~~Wl~~----~~------~~CP~CR~~i~~  205 (370)
                      .+|.||.+.+..++++..+     .|+..||..||.+||..    ++      ..||.|+.+|.-
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            5799999987633322111     38999999999999975    11      139999988753

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=7.2e-06  Score=77.07  Aligned_cols=43  Identities=37%  Similarity=0.799  Sum_probs=38.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK  200 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR  200 (370)
                      +...|+||++.|...   +++||+|.|+..|+..|.. ....||.||
T Consensus        12 ~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr   54 (386)
T KOG2177|consen   12 EELTCPICLEYFREP---VLLPCGHNFCRACLTRSWE-GPLSCPVCR   54 (386)
T ss_pred             ccccChhhHHHhhcC---ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence            457899999999887   8899999999999999987 455699999

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.73  E-value=1.2e-05  Score=77.76  Aligned_cols=49  Identities=31%  Similarity=0.800  Sum_probs=42.3

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|-||.|-|...   .++||+|.||.-||...|.. +..||.|+..+.+..
T Consensus        23 lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~   71 (442)
T KOG0287|consen   23 LLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESD   71 (442)
T ss_pred             HHHHhHHHHHhcCc---eeccccchHHHHHHHHHhcc-CCCCCceecccchhh
Confidence            46899999999876   67899999999999999987 566999998877654

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.6e-05  Score=78.26  Aligned_cols=48  Identities=29%  Similarity=0.713  Sum_probs=35.1

Q ss_pred             cccccccccccC-CCeeEEeC-CCCcccHhHHHHHHhcCC--CCCcccccccc
Q 017521          156 RTCAICLEDYSV-GEKLRILP-CRHKFHAFCVDSWLTSWR--TFCPVCKRDAR  204 (370)
Q Consensus       156 ~~C~ICLe~~~~-~~~v~~lp-C~H~FH~~Ci~~Wl~~~~--~~CP~CR~~i~  204 (370)
                      ..|.|| +++.+ .+.+.-.. |||+||..|+.+|+....  ..||+||-.+.
T Consensus         5 A~C~Ic-~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~   56 (465)
T KOG0827|consen    5 AECHIC-IDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQ   56 (465)
T ss_pred             ceeeEe-ccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccc
Confidence            579999 55544 44555444 999999999999999732  25999984433

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.69  E-value=1.7e-05  Score=75.73  Aligned_cols=55  Identities=24%  Similarity=0.685  Sum_probs=44.3

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHH------------------hc----CCCCCcccccccccCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL------------------TS----WRTFCPVCKRDARTSTG  208 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl------------------~~----~~~~CP~CR~~i~~~~~  208 (370)
                      ...+|+|||.-|..++.+.+++|.|.||..|+...|                  +.    .+..||+||..|-....
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~  190 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN  190 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence            357899999999999999999999999999987544                  32    12349999998766543

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=2.1e-05  Score=75.26  Aligned_cols=54  Identities=24%  Similarity=0.504  Sum_probs=43.6

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP  211 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~  211 (370)
                      ..+|+||+....-.   ..|+|+|.|+.-||+.-....+.+|++||.+|.+.....+
T Consensus         7 ~~eC~IC~nt~n~P---v~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~p   60 (324)
T KOG0824|consen    7 KKECLICYNTGNCP---VNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEP   60 (324)
T ss_pred             CCcceeeeccCCcC---ccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcch
Confidence            36899999987654   6788999999999997666656669999999988765444

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=4.1e-05  Score=75.84  Aligned_cols=47  Identities=36%  Similarity=0.993  Sum_probs=36.6

Q ss_pred             CcccccccccccC-CC-eeEEeCCCCcccHhHHHHHHhc-CCCCCccccc
Q 017521          155 SRTCAICLEDYSV-GE-KLRILPCRHKFHAFCVDSWLTS-WRTFCPVCKR  201 (370)
Q Consensus       155 ~~~C~ICLe~~~~-~~-~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~  201 (370)
                      ..+|+|||+.+.. ++ .+..|.|+|.|..+||+.||.+ ....||.|..
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~   53 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSG   53 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCC
Confidence            5799999999854 34 4455559999999999999964 2345999954

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=6.3e-05  Score=74.31  Aligned_cols=52  Identities=29%  Similarity=0.809  Sum_probs=38.7

Q ss_pred             CCcccccccccccCCC----eeEEeC-CCCcccHhHHHHHHhcCC------CCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGE----KLRILP-CRHKFHAFCVDSWLTSWR------TFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~----~v~~lp-C~H~FH~~Ci~~Wl~~~~------~~CP~CR~~i~~  205 (370)
                      .+..|.||+|...+..    ...+|| |.|.|+..||+.|-...+      ..||.||....-
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            3578999999975432    134556 999999999999984433      459999986443

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.34  E-value=4.2e-05  Score=80.87  Aligned_cols=47  Identities=28%  Similarity=0.502  Sum_probs=40.4

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~  202 (370)
                      ...|++||..+.++...-.-+|+|.||..||+.|-...++ ||+||..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqT-CPiDR~E  169 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQT-CPVDRGE  169 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhccc-Cchhhhh
Confidence            4689999999988766666679999999999999888666 9999874

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=5.2e-05  Score=73.99  Aligned_cols=55  Identities=24%  Similarity=0.414  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccCCCCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPP  211 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~~  211 (370)
                      .+..|.|||+-++..   +.++ |.|-||.+||..-+......||.||+.+-.......
T Consensus        42 ~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~   97 (381)
T KOG0311|consen   42 IQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRI   97 (381)
T ss_pred             hhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCC
Confidence            357999999988754   3444 999999999999998866679999997766554433

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=6.6e-05  Score=54.05  Aligned_cols=48  Identities=23%  Similarity=0.528  Sum_probs=32.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +.+|.||+|.-.+.   ..-.|||+ .+.+|-.+-++..+..||+||++|.+
T Consensus         7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d   55 (62)
T KOG4172|consen    7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD   55 (62)
T ss_pred             ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence            37899999985432   22349999 66667544333345669999998754

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.08  E-value=0.00028  Score=69.73  Aligned_cols=47  Identities=34%  Similarity=0.814  Sum_probs=38.8

Q ss_pred             CcccccccccccC-CCeeEEeCCCCcccHhHHHHHHhcC-CCCCccccc
Q 017521          155 SRTCAICLEDYSV-GEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKR  201 (370)
Q Consensus       155 ~~~C~ICLe~~~~-~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~  201 (370)
                      +.-|..|-|.+.. ++.+.-|||.|+||..|+.+.|.++ ..+||.||.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3579999999854 4678999999999999999999873 235999984

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.05  E-value=0.00016  Score=54.02  Aligned_cols=47  Identities=28%  Similarity=0.619  Sum_probs=24.0

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ..|.+|.+-+++.  |-...|.|+|+..||..-+..   .||+|+.+...++
T Consensus         8 LrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD   54 (65)
T PF14835_consen    8 LRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQD   54 (65)
T ss_dssp             TS-SSS-S--SS---B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS
T ss_pred             cCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHH
Confidence            5799999987754  555669999999999885543   4999998776554

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=96.98  E-value=0.0003  Score=69.60  Aligned_cols=50  Identities=28%  Similarity=0.755  Sum_probs=40.0

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCcccccccccCCC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTG  208 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~~  208 (370)
                      ..|-||-|.   +..|++-||||..|..|+..|-... ...||.||.+|-....
T Consensus       370 eLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~  420 (563)
T KOG1785|consen  370 ELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP  420 (563)
T ss_pred             HHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence            579999886   3458899999999999999998552 2349999998765543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.00025  Score=75.43  Aligned_cols=47  Identities=23%  Similarity=0.547  Sum_probs=38.3

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      -..|++|-+.+++.   .++.|+|+||..||..-+..++..||.|-....
T Consensus       643 ~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG  689 (698)
T ss_pred             ceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence            36899999887653   556699999999999999887777999976543

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00029  Score=61.77  Aligned_cols=41  Identities=34%  Similarity=0.699  Sum_probs=32.0

Q ss_pred             ceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccH
Q 017521          141 PSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHA  182 (370)
Q Consensus       141 p~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~  182 (370)
                      |++.|+++.-. .+..+|.||||+++.+|.+..|||-.+||+
T Consensus       164 PrlsYNdDVL~-ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLK-DDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cccccccchhc-ccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            45555543222 235799999999999999999999999996

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.84  E-value=0.00058  Score=50.25  Aligned_cols=42  Identities=24%  Similarity=0.505  Sum_probs=29.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc-CCCCCcc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-WRTFCPV  198 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~  198 (370)
                      ...|+|.+..|++  .|+-..|+|+|-+..|.+||.. ....||+
T Consensus        11 ~~~CPiT~~~~~~--PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFED--PVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SS--EEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhC--CcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            4789999999874  5888889999999999999944 3455998

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.68  E-value=0.001  Score=74.33  Aligned_cols=56  Identities=25%  Similarity=0.510  Sum_probs=43.3

Q ss_pred             cCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC---------CCCCcccccccccCC
Q 017521          152 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---------RTFCPVCKRDARTST  207 (370)
Q Consensus       152 ~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~---------~~~CP~CR~~i~~~~  207 (370)
                      ...++.|.||..+--.....+.|.|+|+||..|...-|+.+         -..||+|+.+|+...
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence            34568999999886666678999999999999998655541         124999999887643

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=96.60  E-value=0.00084  Score=57.51  Aligned_cols=35  Identities=20%  Similarity=0.484  Sum_probs=30.3

Q ss_pred             CcccccccccccCCCeeEEeCCC------CcccHhHHHHHH
Q 017521          155 SRTCAICLEDYSVGEKLRILPCR------HKFHAFCVDSWL  189 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~------H~FH~~Ci~~Wl  189 (370)
                      ..+|.||++.+..++.|+.++|+      |+||.+|+++|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHH
Confidence            46899999999886678888884      899999999993

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.57  E-value=0.00031  Score=68.98  Aligned_cols=44  Identities=27%  Similarity=0.677  Sum_probs=33.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ....|.||+++.++   ...+||||+-+  |...-..  ...||+||+.|.
T Consensus       304 ~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI~  347 (355)
T KOG1571|consen  304 QPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH--LPQCPVCRQRIR  347 (355)
T ss_pred             CCCceEEecCCccc---eeeecCCcEEE--chHHHhh--CCCCchhHHHHH
Confidence            45789999999765   57889999955  7766433  345999998765

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0027  Score=58.59  Aligned_cols=53  Identities=25%  Similarity=0.605  Sum_probs=42.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-------CCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-------RTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-------~~~CP~CR~~i~~~~~  208 (370)
                      ...|..|-..+..+|.+| |-|-|+||.+|+++|-..-       --.||.|-.+|.+...
T Consensus        50 ~pNC~LC~t~La~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~N  109 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPIN  109 (299)
T ss_pred             CCCCceeCCccccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCcc
Confidence            467999999999898766 5699999999999997651       1139999998887654

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.38  E-value=0.0024  Score=45.03  Aligned_cols=41  Identities=37%  Similarity=0.869  Sum_probs=27.8

Q ss_pred             cccccccccCCCeeEEeCCC-----CcccHhHHHHHHhc-CCCCCccc
Q 017521          158 CAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~C  199 (370)
                      |-||+++-...+ ..+.||+     -..|..|++.|+.. .+..|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789999977665 4457863     36899999999986 34559987

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.35  E-value=0.0018  Score=65.65  Aligned_cols=54  Identities=26%  Similarity=0.606  Sum_probs=43.0

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP  210 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~  210 (370)
                      .+..|++|...+.+.  +..+.|||.|+..|+..|+..++ .||.|+..+......+
T Consensus        20 ~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~-~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQ-KCPVCRQELTQAEELP   73 (391)
T ss_pred             ccccCccccccccCC--CCCCCCCCcccccccchhhccCc-CCcccccccchhhccC
Confidence            457899999998765  33357999999999999999944 5999988777655444

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0021  Score=64.92  Aligned_cols=49  Identities=27%  Similarity=0.626  Sum_probs=40.8

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ..+..|.||+.-+...   ..+||||.|+..||++-+.+ .+.||.||..+.+
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhcc-CCCCccccccccc
Confidence            3468999998887665   67799999999999997775 5569999998876

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.25  E-value=0.0032  Score=62.89  Aligned_cols=38  Identities=29%  Similarity=0.690  Sum_probs=33.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS  191 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~  191 (370)
                      ....|.||+++....+-+..|||+|+|++.|+...+..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~  220 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTI  220 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHH
Confidence            45799999999877788899999999999999998764

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.95  E-value=0.0038  Score=44.20  Aligned_cols=45  Identities=24%  Similarity=0.630  Sum_probs=21.6

Q ss_pred             cccccccccCCCeeEEeC--CCCcccHhHHHHHHhcCCCCCccccccc
Q 017521          158 CAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDA  203 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i  203 (370)
                      |++|.+++...+ ...+|  |++..+..|...-++.....||-||++.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994432 34556  7888888888776654456699999864

>PHA02862 5L protein; Provisional

Probab=95.93  E-value=0.0053  Score=53.11  Aligned_cols=48  Identities=25%  Similarity=0.539  Sum_probs=35.6

Q ss_pred             CcccccccccccCCCeeEEeCCC-----CcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~  206 (370)
                      +..|-||+++-+  +.  .-||.     ..-|..|+.+|++. ++..|++|+.+..-.
T Consensus         2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            368999999843  33  35763     46899999999986 446699998866543

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.74  E-value=0.0089  Score=52.63  Aligned_cols=50  Identities=20%  Similarity=0.609  Sum_probs=36.2

Q ss_pred             CCcccccccccccCCCeeEEeCCC--C---cccHhHHHHHHhcC-CCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTSW-RTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~--H---~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~  207 (370)
                      .+..|-||.++..  +.  .-||.  .   .-|..|++.|+... ...|++|+.+..-..
T Consensus         7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~   62 (162)
T PHA02825          7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK   62 (162)
T ss_pred             CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence            3578999998843  22  35764  3   56999999999873 456999988765543

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.69  E-value=0.0046  Score=50.36  Aligned_cols=31  Identities=26%  Similarity=0.708  Sum_probs=27.1

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHH
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVD  186 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~  186 (370)
                      ...|++|-..+.. ..+.+.||||+||..|++
T Consensus        78 ~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   78 STKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            4689999999977 578889999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.62  E-value=0.0049  Score=63.23  Aligned_cols=53  Identities=25%  Similarity=0.582  Sum_probs=40.2

Q ss_pred             ccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc----CCCCCcccccccccC
Q 017521          151 DNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTS  206 (370)
Q Consensus       151 ~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~i~~~  206 (370)
                      ++.+...|-+|-+.-++   -.+..|.|.||+.||..++..    .+.+||+|...+.-.
T Consensus       532 enk~~~~C~lc~d~aed---~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAED---YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cccCceeecccCChhhh---hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            44566899999887443   356779999999999887654    456799997766554

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2

Probab=95.49  E-value=0.017  Score=51.17  Aligned_cols=37  Identities=16%  Similarity=0.280  Sum_probs=30.7

Q ss_pred             CCceEEEEEcCCCChH-------------------HHHHHHHHcCCcEEEEeccCC
Q 017521            1 MSSAFVLTIRGGCSFE-------------------DKVRNAQKAGFEAAIVYDNED   37 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~-------------------~Kv~nAq~aGA~avIVyn~~~   37 (370)
                      ++||||+|.+|+=.|.                   .|...|+++||+|||+.++..
T Consensus        48 VkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~  103 (157)
T cd04821          48 VKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE  103 (157)
T ss_pred             cCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence            6899999998865443                   499999999999999997643

A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.43  E-value=0.02  Score=53.78  Aligned_cols=53  Identities=13%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             CcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      ...|+||.+.+.+...+.+|. |||+|..+|+++.+.... .||+|-.++.+...
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~-v~pv~d~plkdrdi  274 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM-VDPVTDKPLKDRDI  274 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc-cccCCCCcCcccce
Confidence            478999999999988888885 999999999999877744 59999887766543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.0014  Score=64.76  Aligned_cols=52  Identities=23%  Similarity=0.547  Sum_probs=44.7

Q ss_pred             CcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|+||.+.++.. +++..+-|||++|..||.+||... ..||.||+.+....
T Consensus       196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~-~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK-RKLPSCRRELPKNG  248 (465)
T ss_pred             HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-HHhHHHHhhhhhhh
Confidence            36899999999877 788888899999999999999984 45999999876544

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.96  E-value=0.0092  Score=54.22  Aligned_cols=45  Identities=27%  Similarity=0.593  Sum_probs=36.7

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA  203 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i  203 (370)
                      ...|.||-++|+..   +++.|||.||..|...-++... .|-+|-...
T Consensus       196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~-~C~~Cgk~t  240 (259)
T COG5152         196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGD-ECGVCGKAT  240 (259)
T ss_pred             ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCC-cceecchhh
Confidence            36899999999876   5677999999999988777644 599996643

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.96  E-value=0.014  Score=56.05  Aligned_cols=43  Identities=28%  Similarity=0.627  Sum_probs=33.9

Q ss_pred             cccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCccccc
Q 017521          156 RTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKR  201 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~  201 (370)
                      ..|+.|-.-....  ++ +| |+|.|+..||..-|......||.|.+
T Consensus       275 LkCplc~~Llrnp--~k-T~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP--MK-TPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc--cc-CccccchHHHHHHhhhhhhccccCCCccc
Confidence            5799987776554  33 35 89999999999988876777999954

>PHA03096 p28-like protein; Provisional

Probab=94.92  E-value=0.013  Score=56.87  Aligned_cols=46  Identities=33%  Similarity=0.767  Sum_probs=33.3

Q ss_pred             cccccccccccCC----CeeEEeC-CCCcccHhHHHHHHhcC--CCCCccccc
Q 017521          156 RTCAICLEDYSVG----EKLRILP-CRHKFHAFCVDSWLTSW--RTFCPVCKR  201 (370)
Q Consensus       156 ~~C~ICLe~~~~~----~~v~~lp-C~H~FH~~Ci~~Wl~~~--~~~CP~CR~  201 (370)
                      ..|.||+|.....    ..-..|+ |.|.|+..|+..|....  ...||.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            6899999987543    2345677 99999999999998752  223555543

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.74  E-value=0.02  Score=55.53  Aligned_cols=48  Identities=35%  Similarity=0.802  Sum_probs=40.4

Q ss_pred             cccccccccccCCCe---eEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521          156 RTCAICLEDYSVGEK---LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA  203 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~---v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i  203 (370)
                      ..|-||-++|..++.   -++|.|||.|+..|+..-+......||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            579999999987642   377889999999999998887666799999875

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.59  E-value=0.019  Score=53.80  Aligned_cols=50  Identities=26%  Similarity=0.566  Sum_probs=37.5

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE  209 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~  209 (370)
                      ..|..|...-. ++...++.|.|+||..|...-.   ...||+||..|......
T Consensus         4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~   53 (233)
T KOG4739|consen    4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLN   53 (233)
T ss_pred             EEeccccccCC-CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecc
Confidence            35777765544 8889999999999999977632   22699999987665544

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=94.57  E-value=0.019  Score=62.05  Aligned_cols=47  Identities=30%  Similarity=0.683  Sum_probs=35.7

Q ss_pred             CCcccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCC------CCCcccc
Q 017521          154 TSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWR------TFCPVCK  200 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~------~~CP~CR  200 (370)
                      +..+|.||+|.+...+.+ -.-.|-|+||..||..|-.+..      -.||.|.
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cq  243 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQ  243 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCccc
Confidence            357999999999776544 3334899999999999976521      1399997

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.50  E-value=0.039  Score=52.64  Aligned_cols=50  Identities=20%  Similarity=0.488  Sum_probs=37.4

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~  205 (370)
                      .+.+|++|-+.-..+  -...+|+|+||..||..=+.-. ..+||.|-.++..
T Consensus       238 ~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~  288 (298)
T KOG2879|consen  238 SDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEP  288 (298)
T ss_pred             CCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCcc
Confidence            468999999886554  4566799999999999865531 2459999766553

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.72  E-value=0.053  Score=53.22  Aligned_cols=60  Identities=23%  Similarity=0.522  Sum_probs=40.9

Q ss_pred             ccceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHH--HhcCCCCCcccccc
Q 017521          139 AMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW--LTSWRTFCPVCKRD  202 (370)
Q Consensus       139 ~lp~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~W--l~~~~~~CP~CR~~  202 (370)
                      .-|.+.....++.+.+...|.||-+...   .+.++||+|..|--|--..  |-. +..||+||..
T Consensus        45 aEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE  106 (493)
T COG5236          45 AEPNLTTSSADDTDEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYM-QKGCPLCRTE  106 (493)
T ss_pred             cCCccccccccccccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHh-ccCCCccccc
Confidence            3455444444444556789999998864   4588999999888886543  222 3459999874

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.70  E-value=0.015  Score=55.74  Aligned_cols=42  Identities=29%  Similarity=0.640  Sum_probs=30.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ...|+||++...   .+..|+|||. -|..|-..     -..||+||+.|.
T Consensus       300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkr-----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKR-----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEeecCcEEeehhhccc-----cccCchHHHHHH
Confidence            468999998743   4789999998 45555333     235999998654

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=93.49  E-value=0.024  Score=55.36  Aligned_cols=51  Identities=24%  Similarity=0.554  Sum_probs=40.0

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...+|.+|-.-|.+..  .+.-|-|.||+.||...|.. ..+||+|...|....
T Consensus        14 ~~itC~LC~GYliDAT--TI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~   64 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDAT--TITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTH   64 (331)
T ss_pred             cceehhhccceeecch--hHHHHHHHHHHHHHHHHHHH-hccCCccceeccCcc
Confidence            3578999988776653  33459999999999999998 445999988776654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.43  E-value=0.023  Score=61.45  Aligned_cols=41  Identities=22%  Similarity=0.682  Sum_probs=31.3

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD  202 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~  202 (370)
                      ..|..|--.++.+  .+-.-|+|.||.+|++    .+...||-|+.+
T Consensus       841 skCs~C~~~LdlP--~VhF~CgHsyHqhC~e----~~~~~CP~C~~e  881 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFLCGHSYHQHCLE----DKEDKCPKCLPE  881 (933)
T ss_pred             eeecccCCccccc--eeeeecccHHHHHhhc----cCcccCCccchh
Confidence            6899998877654  4445599999999998    234459999873

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.24  E-value=0.032  Score=53.65  Aligned_cols=46  Identities=22%  Similarity=0.436  Sum_probs=37.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ...|-||.+.|...   +++.|+|.||..|-..=+++.. .|.+|-+.+.
T Consensus       241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTH  286 (313)
T ss_pred             Cccccccccccccc---hhhcCCceeehhhhccccccCC-cceecccccc
Confidence            36799999999876   6778999999999888777644 4999976544

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.09  E-value=0.045  Score=37.86  Aligned_cols=42  Identities=24%  Similarity=0.634  Sum_probs=23.9

Q ss_pred             cccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCC-CCccc
Q 017521          158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT-FCPVC  199 (370)
Q Consensus       158 C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~-~CP~C  199 (370)
                      |.+|.+-...|.....-.|+=.+|..|++.++..... .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            6788887777754443358889999999999887442 49987

; PDB: 3NW0_A 2CT0_A.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.08  E-value=0.054  Score=39.39  Aligned_cols=45  Identities=24%  Similarity=0.483  Sum_probs=31.7

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ..|..|...=.   +-.++||+|+.+..|.+.|-  .+ -||.|-.++...
T Consensus         8 ~~~~~~~~~~~---~~~~~pCgH~I~~~~f~~~r--Yn-gCPfC~~~~~~~   52 (55)
T PF14447_consen    8 QPCVFCGFVGT---KGTVLPCGHLICDNCFPGER--YN-GCPFCGTPFEFD   52 (55)
T ss_pred             eeEEEcccccc---ccccccccceeeccccChhh--cc-CCCCCCCcccCC
Confidence            45666665433   34789999999999988752  23 499998877553

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=91.97  E-value=0.22  Score=48.77  Aligned_cols=48  Identities=21%  Similarity=0.400  Sum_probs=35.6

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA  203 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i  203 (370)
                      .+...|+||+..-.++.  .+..-|-+||..||...+..++. ||+=-.++
T Consensus       298 ~~~~~CpvClk~r~Npt--vl~vSGyVfCY~Ci~~Yv~~~~~-CPVT~~p~  345 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPT--VLEVSGYVFCYPCIFSYVVNYGH-CPVTGYPA  345 (357)
T ss_pred             CccccChhHHhccCCCc--eEEecceEEeHHHHHHHHHhcCC-CCccCCcc
Confidence            34679999999976652  22225999999999999997655 99864443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.82  E-value=0.11  Score=50.97  Aligned_cols=51  Identities=24%  Similarity=0.611  Sum_probs=36.6

Q ss_pred             cccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          156 RTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +.|+.|+|++...|+- .--|||-..|.-|...--+.-+..||-||+...+.
T Consensus        15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            4599999999876643 33458888888887664444456799999966554

>PF04641 Rtf2: Rtf2 RING-finger

Probab=91.82  E-value=0.24  Score=47.36  Aligned_cols=52  Identities=17%  Similarity=0.374  Sum_probs=39.2

Q ss_pred             CCCcccccccccccCCCeeE-EeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          153 CTSRTCAICLEDYSVGEKLR-ILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~-~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      .....|+|...+|.....+. +.||||+|-..+|+.- . ....||+|-.++...
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~~  163 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTEE  163 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCccccC
Confidence            45689999999996655544 4479999999999995 3 233599997776544

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.70  E-value=0.16  Score=50.77  Aligned_cols=30  Identities=27%  Similarity=0.743  Sum_probs=22.9

Q ss_pred             CCCcccHhHHHHHHhcCC------------CCCccccccccc
Q 017521          176 CRHKFHAFCVDSWLTSWR------------TFCPVCKRDART  205 (370)
Q Consensus       176 C~H~FH~~Ci~~Wl~~~~------------~~CP~CR~~i~~  205 (370)
                      |.-++|.+|+.+|+..++            ..||+||+..+-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            566789999999986533            349999997654

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.59  E-value=0.071  Score=57.63  Aligned_cols=50  Identities=22%  Similarity=0.513  Sum_probs=39.3

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC-CCCcccccccccCCCC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGE  209 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~~~~~  209 (370)
                      ..|.||++    .+.+.+.+|+|.|+..|+..-+.... ..||+||..+.+....
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence            79999999    45677888999999999988776522 3499999977765543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.46  E-value=0.12  Score=51.06  Aligned_cols=49  Identities=22%  Similarity=0.493  Sum_probs=38.9

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      .++..|+||...--.   ....||+|.=|..||.+-|...+. |=.|+..+.+
T Consensus       420 sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~-CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKR-CFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCe-eeEecceeee
Confidence            456899999866332   256799999999999999988554 9999987764

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.37  E-value=0.21  Score=36.25  Aligned_cols=33  Identities=21%  Similarity=0.716  Sum_probs=27.6

Q ss_pred             CcccccccccccCCCeeEEeC-CCCcccHhHHHH
Q 017521          155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDS  187 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~  187 (370)
                      ...|.+|-+.|+++|.+.+=| |+-.+|..|.+.
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            468999999998776666666 999999999765

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.18  E-value=0.11  Score=46.64  Aligned_cols=52  Identities=25%  Similarity=0.653  Sum_probs=34.2

Q ss_pred             CcccccccccccCC----CeeEEeCCCCcccHhHHHHHHhc----CCC------CCcccccccccC
Q 017521          155 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTS----WRT------FCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~----~~v~~lpC~H~FH~~Ci~~Wl~~----~~~------~CP~CR~~i~~~  206 (370)
                      ...|-||..---.|    ..+--..||.-||.-|+..||..    ++.      .||.|-.+|.-.
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            35688886432222    22334459999999999999964    222      399998776543

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.76  E-value=0.13  Score=47.60  Aligned_cols=41  Identities=37%  Similarity=0.941  Sum_probs=29.9

Q ss_pred             ccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          157 TCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      .|-.|.+.   +-.|..|||.|+ +|..|-+. +   + .||+|+.....
T Consensus       160 ~Cr~C~~~---~~~VlllPCrHl~lC~~C~~~-~---~-~CPiC~~~~~s  201 (207)
T KOG1100|consen  160 SCRKCGER---EATVLLLPCRHLCLCGICDES-L---R-ICPICRSPKTS  201 (207)
T ss_pred             cceecCcC---CceEEeecccceEeccccccc-C---c-cCCCCcChhhc
Confidence            38888776   345889999887 88888664 2   2 39999876544

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=89.60  E-value=0.16  Score=48.94  Aligned_cols=46  Identities=28%  Similarity=0.693  Sum_probs=37.7

Q ss_pred             CcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521          155 SRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR  201 (370)
Q Consensus       155 ~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~  201 (370)
                      ...|+||.|.+... +.+..++|+|.-|..|+..-...+ -+||+|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            34599999987655 456788999999999999887776 66999977

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.24  E-value=0.17  Score=55.22  Aligned_cols=34  Identities=24%  Similarity=0.601  Sum_probs=27.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHH
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL  189 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl  189 (370)
                      ++.|.+|...+... ...+.||||.||.+||.+-.
T Consensus       817 ~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  817 QDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            57899998887654 66788999999999997643

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.33  E-value=0.22  Score=47.12  Aligned_cols=53  Identities=23%  Similarity=0.580  Sum_probs=37.3

Q ss_pred             CCcccccccccccCCCee-EEeCC-----CCcccHhHHHHHHhcCC-------CCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKL-RILPC-----RHKFHAFCVDSWLTSWR-------TFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v-~~lpC-----~H~FH~~Ci~~Wl~~~~-------~~CP~CR~~i~~~  206 (370)
                      .+..|=||+..=+++..- -+-||     .|..|..|+..|+.+++       ..||.|+.+....
T Consensus        19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv   84 (293)
T KOG3053|consen   19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV   84 (293)
T ss_pred             cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence            357899999875543211 34576     48899999999997532       3499998875544

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.19  E-value=0.16  Score=53.63  Aligned_cols=43  Identities=35%  Similarity=0.665  Sum_probs=31.5

Q ss_pred             cccccccccccCCCee-EEeCCCCcccHhHHHHHHhcCCCCCcccccc
Q 017521          156 RTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRD  202 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v-~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~  202 (370)
                      ..|.||+..|.....+ +-|-|||..|..|+..-..+   +|| |+++
T Consensus        12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~D   55 (861)
T KOG3161|consen   12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRD   55 (861)
T ss_pred             hhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCcc
Confidence            5799999988765433 34459999999999885443   488 7654

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=87.49  E-value=0.34  Score=47.43  Aligned_cols=44  Identities=23%  Similarity=0.551  Sum_probs=33.8

Q ss_pred             CCcccccccccccCCCeeEEeCC--CCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPC--RHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC--~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +-.+|+||.+.+...    +..|  ||+-+..|-.+   . ...||.||.++..
T Consensus        47 ~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~-~~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---V-SNKCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCccc----ceecCCCcEehhhhhhh---h-cccCCcccccccc
Confidence            357899999998875    5568  79999888654   2 3349999998774

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=87.39  E-value=0.22  Score=48.40  Aligned_cols=41  Identities=32%  Similarity=0.755  Sum_probs=27.0

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR  201 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~  201 (370)
                      ..|--|--.+..  .=|..||+|+||.+|-..  .. .+.||.|-.
T Consensus        91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~-dK~Cp~C~d  131 (389)
T KOG2932|consen   91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DS-DKICPLCDD  131 (389)
T ss_pred             EeecccCCccee--eecccccchhhhhhhhhc--Cc-cccCcCccc
Confidence            456666444332  237889999999999765  22 235999854

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=87.35  E-value=0.57  Score=41.39  Aligned_cols=57  Identities=26%  Similarity=0.582  Sum_probs=34.8

Q ss_pred             CcccccccccccCC---------CeeEEeCCCC-cccHhHHHHHHhcC------------------------------CC
Q 017521          155 SRTCAICLEDYSVG---------EKLRILPCRH-KFHAFCVDSWLTSW------------------------------RT  194 (370)
Q Consensus       155 ~~~C~ICLe~~~~~---------~~v~~lpC~H-~FH~~Ci~~Wl~~~------------------------------~~  194 (370)
                      +..|+||||---+.         ..+|-.-|+- .-|..|+|+.-+..                              +.
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            46899999974332         1112112442 25889999875421                              12


Q ss_pred             CCcccccccccCCCCCC
Q 017521          195 FCPVCKRDARTSTGEPP  211 (370)
Q Consensus       195 ~CP~CR~~i~~~~~~~~  211 (370)
                      .||+||-.|..+.-..+
T Consensus        82 ~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             cCccccCceeceEEchH
Confidence            39999998887765443

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=85.39  E-value=0.28  Score=55.60  Aligned_cols=48  Identities=29%  Similarity=0.587  Sum_probs=37.5

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +...|.||++.+....  .+..|+|.+++.|+..|+..+ ..||+|+....
T Consensus      1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~-s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYAS-SRCPICKSIKG 1199 (1394)
T ss_pred             cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHh-ccCcchhhhhh
Confidence            4568999999987432  344599999999999999984 45999985433

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.18  E-value=0.73  Score=44.48  Aligned_cols=45  Identities=31%  Similarity=0.592  Sum_probs=34.1

Q ss_pred             ccccccccc-cCCC-eeEEeCCCCcccHhHHHHHHhcCCCCCccccc
Q 017521          157 TCAICLEDY-SVGE-KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR  201 (370)
Q Consensus       157 ~C~ICLe~~-~~~~-~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~  201 (370)
                      .|++|-.+- -..+ ++.+=+|+|-.|..|++.-+......||.|-.
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~   48 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMV   48 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccc
Confidence            588998763 3332 33333799999999999999888888999944

>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]

Probab=83.69  E-value=0.41  Score=50.64  Aligned_cols=41  Identities=24%  Similarity=0.660  Sum_probs=28.7

Q ss_pred             Cccccccccc-----ccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccc
Q 017521          155 SRTCAICLED-----YSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC  199 (370)
Q Consensus       155 ~~~C~ICLe~-----~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~C  199 (370)
                      ...|.+|-..     |+.....+...|+++||+.|+..    ....||.|
T Consensus       511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s~~CPrC  556 (580)
T KOG1829|consen  511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KSPCCPRC  556 (580)
T ss_pred             eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cCCCCCch
Confidence            4678888432     43334456777999999999665    34449999

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=83.51  E-value=0.54  Score=45.47  Aligned_cols=52  Identities=27%  Similarity=0.591  Sum_probs=37.3

Q ss_pred             CcccccccccccCCCe-eEEeCCC-----CcccHhHHHHHHhc-CCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEK-LRILPCR-----HKFHAFCVDSWLTS-WRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~-v~~lpC~-----H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~  206 (370)
                      +..|-||.++...... ..+.||.     +..|..|++.|+.. .+..|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4689999998654321 4567762     55799999999985 345699998755444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.81  E-value=0.74  Score=49.65  Aligned_cols=26  Identities=27%  Similarity=0.595  Sum_probs=21.4

Q ss_pred             EEeCCCCcccHhHHHHHHhcCCCCCcc
Q 017521          172 RILPCRHKFHAFCVDSWLTSWRTFCPV  198 (370)
Q Consensus       172 ~~lpC~H~FH~~Ci~~Wl~~~~~~CP~  198 (370)
                      ....|+|+-|.+|...|+..... ||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~-Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDV-CPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCc-CCC
Confidence            44569999999999999998554 874

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=82.57  E-value=0.72  Score=43.38  Aligned_cols=46  Identities=33%  Similarity=0.717  Sum_probs=35.8

Q ss_pred             CCccccccccccc-CCC-eeEEeC-CCCcccHhHHHHHHhcCCCCCc--cc
Q 017521          154 TSRTCAICLEDYS-VGE-KLRILP-CRHKFHAFCVDSWLTSWRTFCP--VC  199 (370)
Q Consensus       154 ~~~~C~ICLe~~~-~~~-~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP--~C  199 (370)
                      .+..|+||..+-- ..+ ++.+-| |-|..|..|++.-+......||  -|
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC   59 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGC   59 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccH
Confidence            3468999998743 333 344446 9999999999999998888899  78

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=82.10  E-value=0.68  Score=50.11  Aligned_cols=53  Identities=19%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             CCcccccccccccCC-CeeEEeC---CCCcccHhHHHHHHhc-----CCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVG-EKLRILP---CRHKFHAFCVDSWLTS-----WRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~-~~v~~lp---C~H~FH~~Ci~~Wl~~-----~~~~CP~CR~~i~~~  206 (370)
                      ....|.||..++... |-.-.+|   |.|-||..||..|+.+     .+..|+.|...|..+
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sW  156 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSW  156 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhh
Confidence            457788888888662 3344555   9999999999999875     344589997755443

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=81.39  E-value=1.4  Score=47.94  Aligned_cols=54  Identities=22%  Similarity=0.578  Sum_probs=39.7

Q ss_pred             CCcccccccccccCCCeeEEeCCCC-----cccHhHHHHHHhc-CCCCCcccccccccCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRH-----KFHAFCVDSWLTS-WRTFCPVCKRDARTSTG  208 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H-----~FH~~Ci~~Wl~~-~~~~CP~CR~~i~~~~~  208 (370)
                      +...|-||..+=..++++ .-||+.     -.|.+|+-+|+.- ..+.|-+|+.++.-.+-
T Consensus        11 d~~~CRICr~e~~~d~pL-fhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I   70 (1175)
T COG5183          11 DKRSCRICRTEDIRDDPL-FHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI   70 (1175)
T ss_pred             cchhceeecCCCCCCCcC-cccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence            347899999887666554 346642     3899999999986 34569999987765543

>KOG2195 consensus Transferrin receptor and related proteins containing the protease-associated (PA) domain [Posttranslational modification, protein turnover, chaperones; Inorganic ion transport and metabolism; General function prediction only]

Probab=81.22  E-value=1.6  Score=47.52  Aligned_cols=36  Identities=33%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNE   36 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~   36 (370)
                      ++|+|+|++-|.-.+.+|++||+++||.|||+|.+-
T Consensus       183 ~~g~i~l~r~~~i~~g~~~~na~~~~a~gviiy~d~  218 (702)
T KOG2195|consen  183 LSGKIVLARVGKIYRGKKVKNAEAAGADGVIIYTDP  218 (702)
T ss_pred             ccCceEEEEccccchhhhHhhHHHhhcCcEEEeecc
Confidence            479999999999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	370
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-09
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		5e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		7e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		1e-06
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		5e-06
2ek8_A	421	Aminopeptidase From Aneurinibacillus Sp. Strain Am-		1e-05
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		5e-05
3eif_A	936	1.9 Angstrom Crystal Structure Of The Active Form O		2e-04

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 208
           C +C+ D+   + LR+LPC H+FHA CVD WL + RT CP+C+ D+  S+G
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRT-CPICRADSGPSSG 75

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
           C ICL     GE +R LPC H FH  CVD WL + +  CP+C+ D
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVD 60

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201
           C +C EDY++GE +R LPC H FH  C+  WL    + CPVC++
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRK 60

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 158 CAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCK 200
           CA+CL +   GE+ R LP C H FHA CVD WL S  T CP+C+
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCR 50

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 158 CAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVC 199
           CA+CLED+   ++L I PC+H FH  C+  WL   R  CP+C
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLC 58

>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 Length = 421

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 1   MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60
           ++    L  RG  SF DKVRNA K G +A I+Y+N  DG L    G S    + AV ++K
Sbjct: 113 LNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNT-DGKLNGTLGGSDASFVAAVGITK 171
Query: 61  ASGEKL 66
             G+ L
Sbjct: 172 QEGDAL 177

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 133 SRRLVKAMPSLIFT----AVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW 188
           S+  + A+P ++ T    AV ++ C    C IC  +Y  G+    LPC H FH  CV  W
Sbjct: 18  SKESIDALPEILVTEDHGAVGQEMC----CPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 189 LTSWRTFCPVCK 200
           L    T CPVC+
Sbjct: 74  LQKSGT-CPVCR 84

>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 1   MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSK 60
           +     L  RG   F+DK+ NA+KAG    ++YDN+D G  + +       ++ A F+S+
Sbjct: 288 VKGKIALIERGDIDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVD---QMPAAFISR 344
Query: 61  ASGEKLKQYAGST 73
             G  LK  +  T
Sbjct: 345 KDGLLLKDNSKKT 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-25
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	5e-23
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	4e-21
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	5e-21
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	1e-20
2ect_A	78	Ring finger protein 126; metal binding protein, st	6e-19
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	2e-17
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	2e-14
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	3e-13
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-12
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-12
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	7e-11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-09
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	7e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	1e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	7e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-07
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	3e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	5e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-07
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	3e-06
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	5e-06
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	3e-05
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	5e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	6e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	7e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	7e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	2e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	2e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	2e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	4e-04
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	4e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-04
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	5e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 96.6 bits (241), Expect = 3e-25
 Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)

Query: 133 SRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW 192
           S      +PS  F            C +C+ D+   + LR+LPC H+FHA CVD WL + 
Sbjct: 2   SSGSSGQLPSYRFNPN-NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60

Query: 193 RTFCPVCKRDARTSTG 208
           RT CP+C+ D+  S+G
Sbjct: 61  RT-CPICRADSGPSSG 75

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 90.1 bits (224), Expect = 5e-23
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 150 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE 209
            +  T   C ICL     GE +R LPC H FH  CVD WL + +  CP+C+ D       
Sbjct: 9   TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKK-CPICRVDIEA---- 63

Query: 210 PPASES 215
              SES
Sbjct: 64  QLPSES 69

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 85.2 bits (211), Expect = 4e-21
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 149 VEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG 208
           V++      CA+CLED+   ++L I PC+H FH  C+  WL   +  CP+C         
Sbjct: 9   VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKV-CPLCNMPVLQLAQ 67

Query: 209 EPPASE 214
               S 
Sbjct: 68  LSGPSS 73

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 85.5 bits (212), Expect = 5e-21
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 131 GMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLT 190
             S+  + A+P ++ T           C IC  +Y  G+    LPC H FH  CV  WL 
Sbjct: 16  PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQ 75

Query: 191 SWRTFCPVCKRD 202
              T CPVC+  
Sbjct: 76  KSGT-CPVCRCM 86

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} Length = 194

 Score = 87.5 bits (216), Expect = 1e-20
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 5   FVLTIRGG-CSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASG 63
             L  RGG C+F DK+  A + G   A++++       V    +   + I A+ +    G
Sbjct: 107 LALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIGNLKG 166

Query: 64  EKLKQY-AGSTDMEIWIIPSFENSAW 88
            K+ Q       + + I    ++  W
Sbjct: 167 TKILQSIQRGIQVTMVIEVGKKHGPW 192

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 79.4 bits (196), Expect = 6e-19
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 3/62 (4%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART--STGEPPASE 214
            C +C EDY++GE +R LPC H FH  C+  WL    + CPVC++      +   PP   
Sbjct: 17  ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDS-CPVCRKSLTGQNTATNPPGLT 75

Query: 215 ST 216
             
Sbjct: 76  GV 77

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 74.2 bits (183), Expect = 2e-17
 Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 158 CAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRD 202
           CA+CL +   GE+ R LP C H FHA CVD WL S  T CP+C+  
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCRLT 52

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 152 NCTSRTCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLTSWRTFCPVCKRDA 203
           +  S  C ICLED      +  +LPC H  H  C +  L      CP+C   +
Sbjct: 2   SSGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYR-CPLCSGPS 53

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 63.2 bits (154), Expect = 3e-13
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD-ARTSTGEPPAS 213
            C IC++  +      ILPC H F   C+D W    R  CP+C+      +    P+S
Sbjct: 17  ECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRN-CPICRLQMTGANESSGPSS 69

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            +  C ICLED S       LPC H F   C+  W+    T CP+CK  
Sbjct: 4   VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPT-CPLCKVP 49

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 61.1 bits (148), Expect = 2e-12
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 148 VVEDNCT------SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCK 200
           V  D C          C  C  +    + + +   C H FH  C+  W+      CP+C+
Sbjct: 13  VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQ 71

Query: 201 RD 202
           +D
Sbjct: 72  QD 73

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926

 Score = 62.8 bits (152), Expect = 7e-11
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)

Query: 6   VLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEK 65
            L  RG   F+DK+  A+KAG    ++YDN+D G  + +       ++ A F+S+  G  
Sbjct: 284 ALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVD---QMPAAFISRKDGLL 340

Query: 66  LKQYAGST 73
           LK     T
Sbjct: 341 LKDNPQKT 348

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 155 SRTCAICLEDYS----VGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201
           + +C IC++ YS     G  +    C H F + C+   L +  T CP C++
Sbjct: 15  TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRK 64

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 5/54 (9%)

Query: 157 TCAICLEDYS----VGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206
           +C IC++ YS     G  +    C H F + C+   L +  T CP C++     
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHK 57

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 155 SRTCAICLEDYS----VGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206
           + +C IC++ YS     G  +    C H F + C+   L +  T CP C++     
Sbjct: 10  TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRKKINHK 64

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 52.8 bits (126), Expect = 7e-08
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 150 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
           E   T + C IC E+      ++I PC H     C+ SW  S    CP C+ +
Sbjct: 327 EMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCE 376

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL-TSWRTFCPVCKRD 202
           + C IC      G+      C  + H  CV  +  ++    CP C   
Sbjct: 16  KICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 48/165 (29%), Positives = 64/165 (38%), Gaps = 9/165 (5%)

Query: 203  ARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVAS 262
              TS      S    L S S + SS   S   +   SS  + P S S+SP+ S  +S  S
Sbjct: 1538 GYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPT-SPSYSPTS 1596

Query: 263  TPYIPQSLRSYCQSPPIS-----VSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNS 317
              Y P S      SP  S      S +S      S   S  S   S  S  Y   SP  S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656

Query: 318  RYMSPYLPSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQS 362
                 Y P+  + SP+   S S+      YS ++ S+SP + + S
Sbjct: 1657 PTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPSYS 1698

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 41/158 (25%), Positives = 59/158 (37%), Gaps = 5/158 (3%)

Query: 205  TSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVASTP 264
             + GE P S    + S   + +S   S  S   S ++    P+       S  +S  S  
Sbjct: 1524 GAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1583

Query: 265  YIPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYL 324
            Y P S      SP  S +  S      S   S  S   S  S  Y   SP  S     Y 
Sbjct: 1584 YSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1641

Query: 325  PSPSNASPSLVGSSSHQQHPLHYSESATSFSPFASAQS 362
            P+  + SP+   S S+      YS ++ S+SP + + S
Sbjct: 1642 PTSPSYSPT---SPSYSPTSPAYSPTSPSYSPTSPSYS 1676

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 43/164 (26%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 203  ARTSTGEPPASESTPLLSSSPASSSILSSIRSSLASSSALHIPPSMSHSPSVSHIHSVAS 262
               S      +        +    +         A +S      S   SP+ S  +S  S
Sbjct: 1495 LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPT-SPTYSPTS 1553

Query: 263  TPYIPQSLRSYCQSP---PISVSRSSLDLRHASSQRSHG--SYIMSSHSIGY----PSIS 313
              Y P S      SP   P S S S     ++ +  S+   S   S  S  Y    PS S
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1613

Query: 314  PLNSRYMSPYLPSPSNASPSL-VGSSSHQQHPLHYSESATSFSP 356
            P +  Y SP  PS S  SPS    S S+      YS ++ S+SP
Sbjct: 1614 PTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1656

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 19/158 (12%)

Query: 210  PPASESTPLLSSSPASSSILSSIRSSLAS----SSALHIPPSMSHSPSVSHIHSVASTPY 265
            P  S ++P  S +  S S  S   S  +     +S  + P S S+SP+ S  +S  S  Y
Sbjct: 1554 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSY 1612

Query: 266  IPQSLRSYCQSPPISVSRSSLDLRHASSQRSHGSYIMSSHSIGYPSISPLNSRYMSPYLP 325
             P S      SP  S S +S      S   S  S          PS SP +  Y SP  P
Sbjct: 1613 SPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTS----------PSYSPTSPSY-SPTSP 1659

Query: 326  SPSNASPSLVGSS-SHQQHPLHYSESATSFSPFASAQS 362
            + S  SPS   +S S+      YS ++ S+SP +   S
Sbjct: 1660 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYS 1697

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 148 VVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206
            VE       C IC+E     +      C       C+  WLT  R  CP C+   +  
Sbjct: 15  SVESIAEVFRCFICMEKLR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 157 TCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            C +C+E   + +       C ++   FC     T     CP C++ 
Sbjct: 13  ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 59

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 19/74 (25%)

Query: 157 TCAICLEDYSVGEK---------------LRILPCRHKFHAFCVDSWL----TSWRTFCP 197
            C IC+E  +V                   R+  C H FH  C+ +            CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 198 VCKRDARTSTGEPP 211
            CK      TG  P
Sbjct: 87  SCKTIYGEKTGTQP 100

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 158 CAICLEDYSVGEKLRI-----LPCRHKFHAFCVDSWLTSWRTF----------CPVCKRD 202
           C IC      G ++ +       C  K HA C++ W  +              CP CK  
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370

Query: 203 ARTSTGE 209
             TS   
Sbjct: 371 LSTSFAA 377

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 150 EDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
           E+      C IC + +       +  CRH F   C      +    C +C + 
Sbjct: 10  EEEEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRA-TPRCYICDQP 58

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 152 NCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-------WRTFCPVCK 200
           +  S  C +CL +Y V +   I  C+  F   C+  ++             CP   
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* Length = 421

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 4   AFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASG 63
              L  RG  SF DKVRNA K G +A I+Y N  DG L    G S    + AV ++K  G
Sbjct: 116 KIALIQRGNISFADKVRNAAKQGAKAVIIY-NNTDGKLNGTLGGSDASFVAAVGITKQEG 174

Query: 64  EKLKQYAG 71
           + L     
Sbjct: 175 DALAANLR 182

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 25/161 (15%)

Query: 56  VFVSKASGEKLKQYAGSTDMEI--------WIIPSFENSAWSIMAISFISL-----LAMS 102
             V+ A+    K      + E+         II S    A S   ++ +       +   
Sbjct: 77  ALVNLATTSISKMATDFAENELDLFRKALELIIDSETGFASSTNILNLVDQLKGKKMRKK 136

Query: 103 AVLATCFFVRRHRIRREAPRASRGREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICL 162
                     +++   E            +  R +  M   I     +       C IC 
Sbjct: 137 EAEQVLQKFVQNKWLIEKEG------EFTLHGRAILEMEQYIRETYPDAVKI---CNICH 187

Query: 163 EDYSVGEKLRILPCRHKFHAFCVDSWL-TSWRTFCPVCKRD 202
               + +      C  + H  CV  +  ++    CP C   
Sbjct: 188 S--LLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204
            C  C  +    +  ++LPC H   + C    L +    CP+C+    
Sbjct: 8   RCQQCQAEA---KCPKLLPCLHTLCSGC----LEASGMQCPICQAPWP 48

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.8 bits (93), Expect = 6e-05
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEPPASE 214
            CAICL+          LPC+H F   CV       +  C +C+++      +   S 
Sbjct: 17  ECAICLQTC---VHPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPEDFLDSGPSS 70

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            C +C   +   +   I+ C H F   C+  +L +   +CP+C   
Sbjct: 17  MCVLCGGYFI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQ 59

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 130 HGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL 189
             +  R     P  +F + VE+      C  C E      +     C+H     C+D   
Sbjct: 30  ASLKDRPASGSPFQLFLSKVEETFQ---CICCQELV---FRPITTVCQHNVCKDCLDRSF 83

Query: 190 TSWRTFCPVCKRDARTSTGEPPASESTPLLSS 221
            +    CP C    R   G   A +    L +
Sbjct: 84  RAQVFSCPAC----RYDLGRSYAMQVNQPLQT 111

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 157 TCAICLEDYSVGEKL-RILPCRHKFHAFCVDSWLT-SWRTF-CPVCKR 201
            C IC+E ++  +   ++L C H     C++  L  S     CP C +
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK 64

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 5/48 (10%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204
            C+ C       E + +  C H F + CV        T CPVC   A 
Sbjct: 24  RCSRCTNILR--EPVCLGGCEHIFCSNCVSDC---IGTGCPVCYTPAW 66

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 156 RTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204
           + C  C         L+++   C H     CVD         CP C    R
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCK 200
            C+IC       +   I  C H F   C+          CP C 
Sbjct: 17  LCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNR-CPKCN 57

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST 207
            C IC E +        L C H F ++C++ W+      CP+C++D ++ T
Sbjct: 66  QCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIE-CPICRKDIKSKT 112

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 7/52 (13%)

Query: 155 SRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWL-TSWRTFCPVCK 200
              C IC  +      L I PC      H  H  C+  W+ +S    C +CK
Sbjct: 15  QDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK 65

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 16/66 (24%)

Query: 152 NCTSRTCAICL---------------EDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFC 196
           +     CAIC                   S    +    C H FH  C+  WL + R  C
Sbjct: 34  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVC 92

Query: 197 PVCKRD 202
           P+  R+
Sbjct: 93  PLDNRE 98

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 157 TCAICLEDYSVGEKLR----ILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201
           +C IC++ YS   +         C H F + C+   L +  T CP C++
Sbjct: 9   SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANT-CPTCRK 56

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 38.7 bits (89), Expect = 5e-04
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 16/66 (24%)

Query: 152 NCTSRTCAICLEDYSV---------------GEKLRILPCRHKFHAFCVDSWLTSWRTFC 196
           +     CAIC                        +    C H FH  C+  WL + R  C
Sbjct: 45  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVC 103

Query: 197 PVCKRD 202
           P+  R+
Sbjct: 104 PLDNRE 109

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.1 bits (86), Expect = 6e-04
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            C  C     V    +   C H+F   C+ + L+S    C  C+  
Sbjct: 17  KCEKCHL---VLCSPKQTECGHRFCESCMAALLSSSSPKCTACQES 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.68
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.6
3icu_A	194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.59
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.52
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.52
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.5
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.48
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.44
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.4
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.4
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.39
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.35
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.33
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.32
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.31
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.28
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.27
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.25
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.24
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.24
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.21
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.21
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.19
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.17
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.16
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.16
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.14
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.12
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.1
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.09
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.09
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.07
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.03
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.01
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.0
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.97
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.97
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.95
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.95
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.92
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.91
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.91
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.9
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.89
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.82
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.82
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.81
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.8
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.75
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.72
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.7
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.69
2ek8_A	421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	98.68
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.66
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.62
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.59
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.58
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.51
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.48
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.47
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.45
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.41
3fed_A	707	Glutamate carboxypeptidase III; metallopeptidase,	98.32
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.29
3kas_A	640	Transferrin receptor protein 1; transferrin recept	98.29
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.19
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.13
3iib_A	444	Peptidase M28; YP_926796.1, structural genomics, J	98.1
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.1
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.01
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	97.87
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	97.74
3nw0_A	238	Non-structural maintenance of chromosomes element	97.7
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	97.55
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.58
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.11
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	91.74
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	89.68
1we9_A	64	PHD finger family protein; structural genomics, PH	86.28
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.74
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	84.28
1wem_A	76	Death associated transcription factor 1; structura	83.84
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	83.5
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	82.69
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	82.58
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	81.73
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	81.49
2ysm_A	111	Myeloid/lymphoid or mixed-lineage leukemia protein	81.0

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.68  E-value=3.6e-17  Score=130.41  Aligned_cols=79  Identities=29%  Similarity=0.555  Sum_probs=68.2

Q ss_pred             ccccccccHHHHhccceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          126 GREFHGMSRRLVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       126 ~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      .....+++++.++.||...+........+...|+||+++|..++.++.|||+|.||..||+.|+..+. +||+||..+..
T Consensus        11 ~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~   89 (91)
T 2l0b_A           11 MVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG-TCPVCRCMFPP   89 (91)
T ss_dssp             SSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC-BCTTTCCBSSC
T ss_pred             CcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC-cCcCcCccCCC
Confidence            34567889999999999988776655556789999999999999999999999999999999998754 69999998764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.5e-16  Score=120.60  Aligned_cols=69  Identities=38%  Similarity=0.859  Sum_probs=56.6

Q ss_pred             HHhccceeeeeeeeeccCCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          136 LVKAMPSLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       136 ~~~~lp~~~~~~~~~~~~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      .++.+|...++... ...+...|+||+++|..++.++.|||+|+||..||+.|++.+. .||+||+++...
T Consensus         5 ~i~~lp~~~~~~~~-~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~-~CP~Cr~~~~~~   73 (75)
T 1x4j_A            5 SSGQLPSYRFNPNN-HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR-TCPICRADSGPS   73 (75)
T ss_dssp             CCSSCCCEEBCSSS-CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS-SCTTTCCCCCCC
T ss_pred             hHhhCCcEEecCcc-ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC-cCcCcCCcCCCC
Confidence            35677877776433 2334678999999999999999999999999999999999854 599999988764

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}

Probab=99.59  E-value=6e-16  Score=139.66  Aligned_cols=78  Identities=24%  Similarity=0.434  Sum_probs=63.1

Q ss_pred             CceEEEEEcCC-CChHHHHHHHHHcCCcEEEEeccC-CCcceeeccCCCCCceeeEEEEecccccccccccccc-ccccc
Q 017521            2 SSAFVLTIRGG-CSFEDKVRNAQKAGFEAAIVYDNE-DDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGST-DMEIW   78 (370)
Q Consensus         2 ~~~ivLV~RG~-CsF~~Kv~nAq~aGA~avIVyn~~-~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~~-~vev~   78 (370)
                      ++|||||+||+ |+|.+|++|||++||+||||||++ ++.....|... ....||++||++.+|+.|++.+... .+.+.
T Consensus       104 ~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~-~~~~IPsv~Is~~~G~~L~~~L~~G~~Vtvt  182 (194)
T 3icu_A          104 VSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHP-GAVDIVAIMIGNLKGTKILQSIQRGIQVTMV  182 (194)
T ss_dssp             CCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCT-TCCSSEEEEECHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCC-CCCceeEEEECHHHHHHHHHHHHCCCeEEEE
Confidence            57999999999 999999999999999999999985 33345556543 3457999999999999999988763 44444


Q ss_pred             cc
Q 017521           79 II   80 (370)
Q Consensus        79 L~   80 (370)
                      +.
T Consensus       183 i~  184 (194)
T 3icu_A          183 IE  184 (194)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=110.98  Aligned_cols=53  Identities=36%  Similarity=0.891  Sum_probs=47.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ....|+||+++|..++.+++|+|+|.||..||..|++.+. .||+||+.+....
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~-~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK-VCPLCNMPVLQLA   66 (74)
T ss_dssp             CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS-BCTTTCCBCSSCC
T ss_pred             CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC-cCCCcCccccccc
Confidence            4578999999999999999999999999999999999855 5999999887643

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.52  E-value=1.1e-14  Score=112.16  Aligned_cols=57  Identities=37%  Similarity=0.917  Sum_probs=49.4

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCC
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP  210 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~  210 (370)
                      .+...|+||++.|..++.+++|+|+|.||..||..|++.+ ..||+||..+......+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCC
Confidence            3467999999999998889999999999999999999875 45999999988765443

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-14  Score=108.25  Aligned_cols=54  Identities=43%  Similarity=0.939  Sum_probs=47.6

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      .....|+||++.|..++.++.++|+|+||..||..|+..+. .||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK-KCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC-CCcCcCccccCcC
Confidence            34578999999999888899999999999999999999855 5999999887654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.48  E-value=1.6e-14  Score=103.61  Aligned_cols=49  Identities=47%  Similarity=1.034  Sum_probs=44.2

Q ss_pred             CcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ..+|+||+++|..++.++.++ |+|.||..||++|++.+ .+||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~-~~CP~Cr~~~~   54 (55)
T 1iym_A            5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH-STCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC-CSCSSSCCCSC
T ss_pred             CCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC-CcCcCCCCEeE
Confidence            578999999999999999998 99999999999999884 45999998764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.44  E-value=1.9e-13  Score=112.67  Aligned_cols=60  Identities=30%  Similarity=0.616  Sum_probs=47.4

Q ss_pred             CcccccccccccCCC---------------eeEEeCCCCcccHhHHHHHHhc----CCCCCcccccccccCCCCCCCCC
Q 017521          155 SRTCAICLEDYSVGE---------------KLRILPCRHKFHAFCVDSWLTS----WRTFCPVCKRDARTSTGEPPASE  214 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~---------------~v~~lpC~H~FH~~Ci~~Wl~~----~~~~CP~CR~~i~~~~~~~~~~~  214 (370)
                      +..|+|||++|..++               .++.++|+|+||..||+.|+..    .+..||+||..+....+..|...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g~qp~g~  103 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGK  103 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCCCCCCCe
Confidence            468999999997643               4558899999999999999952    24569999999988766655543

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=107.68  Aligned_cols=51  Identities=29%  Similarity=0.719  Sum_probs=40.2

Q ss_pred             Cccccccccccc-----------CCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYS-----------VGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~-----------~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +..|+||+++|.           .++.++.++ |+|.||..||++||++++ +||+||+++...
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN-RCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC-BCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC-CCCCcCCCcchh
Confidence            456777777774           455577776 999999999999999855 599999987643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=106.41  Aligned_cols=58  Identities=28%  Similarity=0.575  Sum_probs=47.1

Q ss_pred             CCCcccccccccccCCCeeEEeCCC-----CcccHhHHHHHHhcCC-CCCcccccccccCCCCCC
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCR-----HKFHAFCVDSWLTSWR-TFCPVCKRDARTSTGEPP  211 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~-----H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~~~~~~~  211 (370)
                      .+...|.||+++|..++.+ ++||+     |.||..||++||..++ .+||+||..+.......|
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccCC
Confidence            3457899999999887776 69996     9999999999999743 569999999876554433

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.39  E-value=2.3e-13  Score=97.38  Aligned_cols=50  Identities=34%  Similarity=0.721  Sum_probs=42.6

Q ss_pred             CCcccccccccccCC-CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +...|+||+++|..+ +.++.++|+|.||..||+.|+... ..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            357899999999654 467889999999999999999986 45999998764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=5e-13  Score=99.79  Aligned_cols=52  Identities=25%  Similarity=0.618  Sum_probs=43.3

Q ss_pred             CCCcccccccccccCC----CeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          153 CTSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~----~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      .+...|+||++.|...    +.+..++|+|.||..||+.|+..+. .||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS-SCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC-CCCCCCCccCc
Confidence            3457899999999753    4557889999999999999999844 59999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.33  E-value=5.5e-13  Score=100.31  Aligned_cols=53  Identities=26%  Similarity=0.675  Sum_probs=44.6

Q ss_pred             CCcccccccccccC----CCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSV----GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~----~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +...|+||++.|..    ++.+..++|||.||..||+.|++.+. .||+||..+....
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR   65 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS-BCTTTCCBCCCCS
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC-CCCCCCCccChhh
Confidence            35789999999865    35668899999999999999999854 5999999887543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.32  E-value=1.3e-12  Score=107.04  Aligned_cols=51  Identities=27%  Similarity=0.598  Sum_probs=42.3

Q ss_pred             CCCcccccccccccCC---------------CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          153 CTSRTCAICLEDYSVG---------------EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~---------------~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      .++..|+||++.|...               ..++.++|+|.||..||+.||..+ .+||+||++..
T Consensus        35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~Cr~~~~  100 (106)
T 3dpl_R           35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWE  100 (106)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCC
T ss_pred             CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC-CcCcCCCCcce
Confidence            3567899999999754               136788999999999999999984 45999999753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.31  E-value=7.7e-13  Score=97.26  Aligned_cols=51  Identities=25%  Similarity=0.620  Sum_probs=43.4

Q ss_pred             CcccccccccccCC----CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~----~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|...    +.+..++|||.||..||+.|+..+ ..||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-SBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-CCCCCCCccCCcc
Confidence            57899999999753    556888999999999999999984 4699999988754

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-12  Score=98.48  Aligned_cols=50  Identities=30%  Similarity=0.834  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      +...|+||++.+..    ..++|+|.||..||..|+.. +..||+||..+.....
T Consensus        14 ~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           14 DEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCCC
T ss_pred             CCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCCc
Confidence            45789999999875    77899999999999999996 4459999998876543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=4.9e-12  Score=95.84  Aligned_cols=53  Identities=21%  Similarity=0.356  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGE  209 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~  209 (370)
                      +...|+||++.|.+.  +..++|+|.||..||..|+... ..||+||..+......
T Consensus        14 ~~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           14 PYILCSICKGYLIDA--TTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             GGGSCTTTSSCCSSC--EECSSSCCEECHHHHHHHHHHC-SSCTTTCCCCCSSCSC
T ss_pred             CCCCCCCCChHHHCc--CEECCCCCHHHHHHHHHHHHcC-CcCCCcCcccCccccc
Confidence            357899999998763  4445999999999999999874 4599999998775443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=1.2e-12  Score=98.97  Aligned_cols=50  Identities=30%  Similarity=0.589  Sum_probs=42.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +...|+||++.+.+.   ..++|+|.||..||..|+... ..||+||..+....
T Consensus        14 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           14 TVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPEDF   63 (71)
T ss_dssp             SCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHH
T ss_pred             CCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhh
Confidence            457899999998653   678999999999999999875 45999999887643

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=5.9e-12  Score=98.48  Aligned_cols=53  Identities=26%  Similarity=0.655  Sum_probs=44.8

Q ss_pred             CCcccccccccccCCCe-eEEeCCCCcccHhHHHHHHhcC--CCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSW--RTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~-v~~lpC~H~FH~~Ci~~Wl~~~--~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|...+. .+.++|||.||..||..|+...  ...||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            45789999999987664 6788999999999999999874  35699999987654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.24  E-value=5.2e-12  Score=94.27  Aligned_cols=49  Identities=37%  Similarity=0.815  Sum_probs=41.7

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.+..  .++.++|+|.||..||..|+..+. .||+||..+...
T Consensus         5 ~~~C~IC~~~~~~--~~~~~~C~H~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~   53 (68)
T 1chc_A            5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESV   53 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCCE
T ss_pred             CCCCeeCCccccC--CcEecCCCCeeHHHHHHHHHhCcC-cCcCCChhhHhh
Confidence            4689999999864  357899999999999999999854 599999988643

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=6.6e-12  Score=93.42  Aligned_cols=50  Identities=20%  Similarity=0.454  Sum_probs=41.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.+.+.   ..++|||.||..||..|+...+..||+||..+...
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           14 DKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             cCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            357899999999765   34799999999999999965455699999988754

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.21  E-value=2.5e-12  Score=107.11  Aligned_cols=52  Identities=29%  Similarity=0.659  Sum_probs=1.9

Q ss_pred             cCCCcccccccccccCC-------------Ce--eEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          152 NCTSRTCAICLEDYSVG-------------EK--LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       152 ~~~~~~C~ICLe~~~~~-------------~~--v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +.+++.|+||+++|...             ++  +..++|+|.||..||++||..+. +||+||++..
T Consensus        45 d~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~-~CP~Cr~~~~  111 (117)
T 4a0k_B           45 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE  111 (117)
T ss_dssp             CCCC----------------------------------------------------------------
T ss_pred             cCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC-cCCCCCCeee
Confidence            33567999999999752             22  33458999999999999999854 5999999754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.1e-11  Score=93.68  Aligned_cols=50  Identities=26%  Similarity=0.540  Sum_probs=41.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc--CCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|.+   ...++|+|.||..||..|++.  .+..||+||..+...
T Consensus        19 ~~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           19 EEVICPICLDILQK---PVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCBCTTTCSBCSS---EEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             cCCEeccCCcccCC---eEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            45799999999874   356799999999999999973  345699999988654

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=1.6e-11  Score=91.01  Aligned_cols=53  Identities=26%  Similarity=0.503  Sum_probs=42.8

Q ss_pred             Ccccccccc-cccCCCe-eEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLE-DYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe-~~~~~~~-v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|+||++ .|..... +..++|||.||..||+.|+.+.+..||+||..+....
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSN   57 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccccc
Confidence            468999999 7766543 3567999999999999998775667999999887543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.16  E-value=2.6e-11  Score=92.41  Aligned_cols=49  Identities=20%  Similarity=0.573  Sum_probs=40.5

Q ss_pred             CCcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCC-CCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWR-TFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~-~~CP~CR~~i~~  205 (370)
                      +...|+||++.|.+.   ..++ |+|.||..||..|+.... ..||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            457899999999865   5689 999999999999998742 469999996543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.6e-11  Score=94.98  Aligned_cols=47  Identities=21%  Similarity=0.506  Sum_probs=40.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ....|+||++.|...   .+++|+|.||..||..|+... ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~   60 (81)
T 2csy_A           14 IPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRAT-PRCYICDQPTG   60 (81)
T ss_dssp             CCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHC-SBCSSSCCBCC
T ss_pred             CCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCC-CcCCCcCcccc
Confidence            457899999998653   468999999999999999874 45999999885

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.14  E-value=2.8e-11  Score=92.72  Aligned_cols=53  Identities=23%  Similarity=0.486  Sum_probs=42.9

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCcccccccccCCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTGE  209 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~~~  209 (370)
                      ...|+||++.+..++++.  .|+|.||..||++||+.+ +.+||+||++.....++
T Consensus        15 i~~C~IC~~~i~~g~~C~--~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~   68 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK   68 (74)
T ss_dssp             SCBCSSSCCBCSSSEECS--SSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCC
T ss_pred             CCcCcchhhHcccCCccC--CCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCC
Confidence            478999999998775443  899999999999999875 25699999887655443

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.12  E-value=3.8e-11  Score=92.04  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=42.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|.+.   ..++|||.||..||..|+...+..||+||..+...
T Consensus         7 ~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            457999999998754   56799999999999999987456699999988653

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=6.2e-11  Score=87.18  Aligned_cols=43  Identities=26%  Similarity=0.561  Sum_probs=36.3

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc--CCCCCccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC  199 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~C  199 (370)
                      +...|+||++.|.+.   ++++|||.||..||..|++.  .+..||+|
T Consensus        19 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           19 EEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            457899999999864   56799999999999999984  34569998

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.09  E-value=8.3e-11  Score=90.93  Aligned_cols=50  Identities=30%  Similarity=0.521  Sum_probs=42.0

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-----CCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-----RTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-----~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|...   ..++|+|.||..||..|+...     ...||+||..+...
T Consensus        18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           18 EEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             TTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             cCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            457899999998765   478999999999999999872     45699999987653

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.09  E-value=3.6e-11  Score=102.61  Aligned_cols=47  Identities=30%  Similarity=0.890  Sum_probs=40.1

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|...   +.+||||.||..||..|+..+. .||+||.++..
T Consensus        53 ~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~   99 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKI-ECPICRKDIKS   99 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCS-BCTTTCCBCCC
T ss_pred             cCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCC-cCCCCCCcCCC
Confidence            35799999998753   6789999999999999998754 59999998754

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.08  E-value=4.5e-11  Score=96.50  Aligned_cols=50  Identities=26%  Similarity=0.542  Sum_probs=41.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|..  .+..++|||.||..||..|+...+..||+||..+...
T Consensus        22 ~~~C~IC~~~~~~--p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           22 VFRCFICMEKLRD--ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HTBCTTTCSBCSS--EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCccCCccccC--ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            4689999999874  3444899999999999999998645699999988643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.07  E-value=4.6e-11  Score=99.92  Aligned_cols=53  Identities=25%  Similarity=0.605  Sum_probs=44.4

Q ss_pred             CCcccccccccccCC----CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVG----EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~----~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +...|+||++.|.+.    +.++.++|||.||..||+.|++.++ .||+||+.+....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKR   62 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS-BCTTTCCBCTTTC
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC-CCCCCCCcCcccc
Confidence            357899999999753    5668899999999999999999855 5999999886543

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=6.7e-11  Score=85.22  Aligned_cols=43  Identities=33%  Similarity=0.842  Sum_probs=35.9

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc--CCCCCccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS--WRTFCPVC  199 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~--~~~~CP~C  199 (370)
                      +...|+||++.|.+.   +.++|+|.||..||..|+..  .+..||+|
T Consensus        14 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           14 VEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            457899999999865   45899999999999999654  45569998

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1e-10  Score=90.43  Aligned_cols=50  Identities=30%  Similarity=0.585  Sum_probs=41.5

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc-----CCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-----WRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~-----~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|...   ..++|+|.||..||..|+..     ....||+||..+...
T Consensus        18 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecv_A           18 EEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE   72 (85)
T ss_dssp             CCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS
T ss_pred             CCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH
Confidence            457899999998764   45799999999999999986     244699999988753

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.05  E-value=2.7e-11  Score=92.80  Aligned_cols=49  Identities=29%  Similarity=0.511  Sum_probs=41.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC------CCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW------RTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~------~~~CP~CR~~i~~  205 (370)
                      +...|+||++.|.+.   +.++|||.||..||..|+...      ...||+||..+..
T Consensus        11 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           11 EEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             cCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            457899999999764   457999999999999999862      4569999998865

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.03  E-value=1.7e-10  Score=96.51  Aligned_cols=48  Identities=23%  Similarity=0.411  Sum_probs=41.3

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|...   ..++|||.||..||..|+......||+||..+..
T Consensus        52 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            46899999999854   5679999999999999998655579999998865

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.01  E-value=2.2e-10  Score=90.58  Aligned_cols=49  Identities=20%  Similarity=0.547  Sum_probs=40.8

Q ss_pred             CCCcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcC-CCCCcccccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-RTFCPVCKRDAR  204 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~  204 (370)
                      .+...|+||++.|.+.   ..++ |||.||..||..|+... ...||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            3457999999999865   6789 99999999999999763 356999998863

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.00  E-value=1.4e-10  Score=96.89  Aligned_cols=52  Identities=27%  Similarity=0.689  Sum_probs=43.7

Q ss_pred             CCcccccccccccC----CCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSV----GEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~----~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|..    ++.+..++|||.||..||++|++..+ +||+||..+...
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~-~CP~Cr~~~~~~  126 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHK  126 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS-BCTTTCCBCCGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC-CCCCCCCcCChh
Confidence            35789999999875    34457889999999999999999855 599999988764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.97  E-value=2.4e-10  Score=91.67  Aligned_cols=48  Identities=27%  Similarity=0.735  Sum_probs=39.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|...  +..++|||.||..||..|+... ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p--~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~   69 (99)
T 2y43_A           22 LLRCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTE   69 (99)
T ss_dssp             HTBCTTTCSBCSSE--EECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCG
T ss_pred             CCCcccCChhhCCc--CEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCCh
Confidence            36899999998753  4444899999999999999974 469999998765

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.97  E-value=2.9e-10  Score=99.64  Aligned_cols=49  Identities=29%  Similarity=0.609  Sum_probs=41.4

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|..  .+..++|||.||..||+.|+...+..||+||..+..
T Consensus        54 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           54 ELMCPICLDMLKN--TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCcccChHhhC--cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            4689999999875  455559999999999999999755669999998854

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.95  E-value=3.3e-10  Score=92.39  Aligned_cols=49  Identities=22%  Similarity=0.657  Sum_probs=40.9

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|.+  .+..++|||.||..||..|+... ..||+||..+...
T Consensus        15 ~~~C~IC~~~~~~--p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           15 HLMCVLCGGYFID--ATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKT   63 (108)
T ss_dssp             GTBCTTTSSBCSS--EEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred             cCCCccCChHHhC--cCEeCCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence            5789999999875  45445999999999999999985 5599999987653

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.95  E-value=4.6e-10  Score=97.32  Aligned_cols=49  Identities=22%  Similarity=0.399  Sum_probs=42.0

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|...   .+++|+|.||..||..|+......||+||..+...
T Consensus        78 ~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            36899999998754   55899999999999999997555699999988765

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.92  E-value=1.1e-09  Score=84.55  Aligned_cols=53  Identities=21%  Similarity=0.621  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCeeEEeC--CCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILP--CRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lp--C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +...|+||++.+...+. +.+|  |||.||..|+..|+......||+||+.+....
T Consensus        10 ~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~   64 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDP   64 (78)
T ss_dssp             CCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred             cCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence            45789999999865432 3444  99999999999998665567999999887654

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.91  E-value=5.5e-10  Score=91.16  Aligned_cols=49  Identities=33%  Similarity=0.648  Sum_probs=40.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC--CCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~--~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|...   ..++|||.||..||..|+....  ..||+||..+...
T Consensus        21 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh
Confidence            36899999998765   4579999999999999998643  3599999987754

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.91  E-value=2.3e-10  Score=94.32  Aligned_cols=48  Identities=29%  Similarity=0.648  Sum_probs=41.3

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|...   +.|+|||.||..||..|+...+..||+||..+..
T Consensus        15 ~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            46899999998754   6679999999999999998756679999998764

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.90  E-value=5.1e-10  Score=92.84  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=42.0

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|...   ..++|||.||..||..|+......||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            347899999998754   56799999999999999988554699999987653

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.89  E-value=8.4e-10  Score=91.04  Aligned_cols=50  Identities=24%  Similarity=0.553  Sum_probs=41.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|+||++.|.+.   ..++|||.||..||..|+......||+||..+....
T Consensus        23 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            46899999998753   458999999999999999975556999999887643

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.82  E-value=7.4e-10  Score=95.07  Aligned_cols=49  Identities=22%  Similarity=0.489  Sum_probs=41.4

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +...|+||++.|.+.   ..++|||.||..||..|+......||+||.++..
T Consensus        30 ~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~   78 (141)
T 3knv_A           30 AKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY   78 (141)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred             cCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence            357899999998765   5589999999999999998765569999998743

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.82  E-value=8.6e-10  Score=79.53  Aligned_cols=46  Identities=22%  Similarity=0.582  Sum_probs=38.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|...   +.|+|+|.||..||..|    ...||+||+.+...
T Consensus         5 ~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred             cCCCceEeCCccCCe---EEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence            457899999999865   67899999999999884    34599999987654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.81  E-value=1.6e-09  Score=80.31  Aligned_cols=47  Identities=23%  Similarity=0.455  Sum_probs=38.2

Q ss_pred             CcccccccccccCCCeeEEe--CCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRIL--PCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~l--pC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +..|.||++.+.+.   ..+  ||||. |+..|+..|.+.++ .||+||+++..
T Consensus         8 ~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~-~CPiCR~~i~~   57 (64)
T 2vje_A            8 IEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNK-PCPVCRQPIQM   57 (64)
T ss_dssp             GSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTC-CCTTTCCCCCE
T ss_pred             cCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCC-cCCCcCcchhc
Confidence            46899999986543   344  99999 89999999998744 59999998754

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.80  E-value=1.8e-09  Score=106.72  Aligned_cols=50  Identities=30%  Similarity=0.698  Sum_probs=41.9

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|+||++.+..   ...+||||.||..|+..|+...+..||+||..+....
T Consensus       332 ~~~C~ICle~~~~---pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCC---EEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCC---eEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            4689999999854   4789999999999999999844556999999887643

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.75  E-value=3.3e-09  Score=78.43  Aligned_cols=49  Identities=18%  Similarity=0.418  Sum_probs=38.2

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|.||++.+.+. .+..+||||. |+..|+..|.+.. ..||+||+++..
T Consensus         7 ~~~C~IC~~~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~   56 (63)
T 2vje_B            7 LKPCSLCEKRPRDG-NIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL   56 (63)
T ss_dssp             GSBCTTTSSSBSCE-EEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred             CCCCcccCCcCCCe-EEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence            47899999986542 1222399998 9999999998774 459999998854

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.72  E-value=7.3e-09  Score=81.15  Aligned_cols=49  Identities=10%  Similarity=-0.063  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|.+.   .+++|||.|+..||..|+.. +.+||+||..+...
T Consensus        13 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           13 DEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTES   61 (85)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGG
T ss_pred             hheECcccCchhcCC---eECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChH
Confidence            458999999999875   67899999999999999997 45699999887643

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.70  E-value=7.2e-09  Score=83.48  Aligned_cols=49  Identities=12%  Similarity=-0.000  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCeeEEeCCC-CcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~-H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|++.   ++++|| |.|+..||..|+.. +.+||+||..+...
T Consensus        21 ~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred             HhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence            357999999999865   568999 99999999999987 45699999987653

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.69  E-value=6.3e-09  Score=84.14  Aligned_cols=48  Identities=8%  Similarity=-0.062  Sum_probs=41.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +...|+||++-|.+.   .+++|||.|+..||..|+.. +.+||+||..+..
T Consensus        28 ~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~   75 (100)
T 2kre_A           28 DEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTE   75 (100)
T ss_dssp             TTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCT
T ss_pred             HhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHc-CCCCCCCCCCCCh
Confidence            457999999999875   67899999999999999986 4569999998765

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*

Probab=98.68  E-value=1.6e-08  Score=101.12  Aligned_cols=69  Identities=38%  Similarity=0.523  Sum_probs=56.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYA   70 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l   70 (370)
                      ++||||||+||+|.|.+|+++|+++||+|||||++.+. ....+.+......||++.|+..+++.|.+.+
T Consensus       113 v~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~-~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l  181 (421)
T 2ek8_A          113 LNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDG-KLNGTLGGSDASFVAAVGITKQEGDALAANL  181 (421)
T ss_dssp             CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSS-CCCCBCSSCCTTCCEEEEECHHHHHHHHHHH
T ss_pred             cCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCc-ccccccCCCCCCCccEEEeCHHHHHHHHHHh
Confidence            58999999999999999999999999999999998643 2333333334567999999999988877665

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.66  E-value=4.4e-09  Score=87.03  Aligned_cols=45  Identities=31%  Similarity=0.543  Sum_probs=38.1

Q ss_pred             CcccccccccccCCCeeEEe-CCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|+||++.|...   ..+ +|||.||..||..|+.   ..||+||..+..
T Consensus        22 ~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~   67 (117)
T 1jm7_B           22 LLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWI   67 (117)
T ss_dssp             TTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred             CCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence            47899999999764   455 8999999999999987   359999998743

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.66  E-value=1.5e-08  Score=74.25  Aligned_cols=48  Identities=29%  Similarity=0.654  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCCeeEEeCCC--C---cccHhHHHHHHhc-CCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCR--H---KFHAFCVDSWLTS-WRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~--H---~FH~~Ci~~Wl~~-~~~~CP~CR~~i~  204 (370)
                      +...|.||+++.  ++.+ ++||.  |   .||..||++|+.. .+.+||+||..+.
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            457899999983  3444 68964  4   8999999999985 4567999998764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=8.7e-09  Score=96.51  Aligned_cols=49  Identities=16%  Similarity=0.135  Sum_probs=42.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +...|+||++-|.+.   ++++|||.|+..||..|+.....+||+||.++..
T Consensus       207 ~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          207 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             cccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            467999999999865   6789999999999999998755559999998864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.62  E-value=9e-09  Score=78.39  Aligned_cols=43  Identities=23%  Similarity=0.641  Sum_probs=36.4

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      ...|.||++.+.+   ...+||||. |+..|+..|     ..||+||..+..
T Consensus        24 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           24 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             CCCCCCCCCCCCC---EEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            3689999998764   467899999 999999998     349999998764

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.59  E-value=2e-08  Score=88.14  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++.|.+.   ..++|||.|+..||..|+......||+||..+...
T Consensus        17 ~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           17 SKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            357999999998764   55899999999999999987554699999887653

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.58  E-value=6.5e-09  Score=100.50  Aligned_cols=54  Identities=30%  Similarity=0.632  Sum_probs=41.3

Q ss_pred             CCCcccccccccccCCCee-----EEeCCCCcccHhHHHHHHhcCC----------CCCcccccccccC
Q 017521          153 CTSRTCAICLEDYSVGEKL-----RILPCRHKFHAFCVDSWLTSWR----------TFCPVCKRDARTS  206 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v-----~~lpC~H~FH~~Ci~~Wl~~~~----------~~CP~CR~~i~~~  206 (370)
                      .+..+|+||++.+..+.++     .-.+|+|.||..||.+||....          ..||.||++|...
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            3567999999999873333     2346999999999999998621          2499999988653

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=4.8e-08  Score=77.79  Aligned_cols=46  Identities=22%  Similarity=0.495  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcC-----CCCCcc--cccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSW-----RTFCPV--CKRD  202 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~-----~~~CP~--CR~~  202 (370)
                      ....|+||++.|.+.   .+++ |||.|+..||..|+..+     ...||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            357899999999864   5575 99999999999999863     246999  9865

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=9.1e-08  Score=71.75  Aligned_cols=46  Identities=30%  Similarity=0.697  Sum_probs=37.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      +...|.||++.+.+   +..+||+|. |+..|+..     ...||+||..|....
T Consensus        14 ~~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~   60 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESF   60 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEE
T ss_pred             CCCCCCCcCcCCCC---EEEECCCChhhhHHHHhc-----CCCCCCCCcchhceE
Confidence            45789999998654   578999999 99999984     235999999887643

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.47  E-value=5.4e-08  Score=77.25  Aligned_cols=48  Identities=27%  Similarity=0.713  Sum_probs=39.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc----C---CCCCcc--cccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS----W---RTFCPV--CKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~----~---~~~CP~--CR~~  202 (370)
                      ..+|.||++++...+.+..++|+|.|+..||..++..    .   ...||.  ||..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4689999999987766666689999999999999874    1   236999  9987

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.45  E-value=6.3e-08  Score=86.20  Aligned_cols=50  Identities=16%  Similarity=0.126  Sum_probs=41.9

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|.+.   .++||||.|+..||..|+..+..+||+||.++...
T Consensus       105 ~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~  154 (179)
T 2f42_A          105 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD  154 (179)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             HhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence            458999999999865   56799999999999999987434699999887653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=1.2e-07  Score=72.19  Aligned_cols=44  Identities=23%  Similarity=0.628  Sum_probs=35.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.+.+   ...+||||. |+..|+..+     ..||+||..+...
T Consensus        25 ~~~C~IC~~~~~~---~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNIA---IVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCCC---BCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCCC---EEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence            3689999999764   356899999 999999652     3599999988653

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...

Probab=98.32  E-value=3.3e-07  Score=97.37  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=33.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDN   35 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~   35 (370)
                      ++||||||+||+|.|.+|+++|+++||+|||||++
T Consensus       153 v~GkIvlv~~G~~~~~~Kv~~A~~~GA~gviiy~d  187 (707)
T 3fed_A          153 CTGKIVIARYGKIFRGNKVKNAMLAGAIGIILYSD  187 (707)
T ss_dssp             CTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred             CCCeEEEEECCCCCHhHHHHHHHHCCCEEEEEEcC
Confidence            57999999999999999999999999999999986

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.29  E-value=1.4e-07  Score=72.72  Aligned_cols=45  Identities=24%  Similarity=0.615  Sum_probs=37.1

Q ss_pred             CcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      ...|.||++.+..   +..+||||. |+..|+..|    + .||+||..+....
T Consensus        18 ~~~C~IC~~~~~~---~v~~pCgH~~~C~~C~~~~----~-~CP~Cr~~i~~~~   63 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCPCGHTVCCESCAAQL----Q-SCPVCRSRVEHVQ   63 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEETTCBCCBCHHHHTTC----S-BCTTTCCBCCEEE
T ss_pred             CCEeEEeCcccCc---EEEECCCCHHHHHHHHHhc----C-cCCCCCchhhCeE
Confidence            3689999998654   578899999 999999986    2 5999999887653

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A

Probab=98.29  E-value=4.8e-07  Score=95.17  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=53.0

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcce-------ee----ccCCC-------------------CC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVL-------VA----MAGNS-------------------AG   50 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~-------~~----m~g~~-------------------~~   50 (370)
                      ++||||||+||+|.|.+|+++|+++||+|||||++..+...       .+    ..|++                   ..
T Consensus       130 v~GkIvlv~~g~~~~~~K~~~A~~~GA~gvii~~~~~~~~~~~~~~~~~G~~~~~~Gdp~tpg~ps~~~~~~~~~~~~~~  209 (640)
T 3kas_A          130 VNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGL  209 (640)
T ss_dssp             CTTSEEEEESCSSCHHHHHHHHHTTTCSEEEEECCTTTCCCSCTTCCCCEECCSSSSCSCCCSSCC---CCCCCCSSCCC
T ss_pred             cCCcEEEEecCCCCHHHHHHHHHHCCCeEEEEEeccccccccccccccccccccCCCCCCCCCcccccccccccccccCC
Confidence            58999999999999999999999999999999997532111       00    00110                   12


Q ss_pred             ceeeEEEEeccccccccccc
Q 017521           51 IKIHAVFVSKASGEKLKQYA   70 (370)
Q Consensus        51 i~IpvVfIs~~~Ge~L~k~l   70 (370)
                      ..||++-|+..+++.|.+.+
T Consensus       210 p~IP~~~Is~~~a~~Ll~~l  229 (640)
T 3kas_A          210 PNIPVQTISRAAAEKLFGNM  229 (640)
T ss_dssp             CSSCEEECCHHHHHHHHTTE
T ss_pred             CCCCEEecCHHHHHHHHHHc
Confidence            46999999999998887654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.19  E-value=5.3e-07  Score=66.16  Aligned_cols=50  Identities=12%  Similarity=0.067  Sum_probs=41.1

Q ss_pred             CcccccccccccCCCeeEEe-CCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRIL-PCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~l-pC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      ...|+||++.|.+.   .++ +|||+|.+.||++||..+. +||+++.++.....
T Consensus         3 ~~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~~~~L   53 (61)
T 2bay_A            3 HMLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEI   53 (61)
T ss_dssp             -CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGC
T ss_pred             eEEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCChhhc
Confidence            36799999999854   455 8999999999999999855 49999998876543

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.13  E-value=8.5e-07  Score=83.02  Aligned_cols=49  Identities=24%  Similarity=0.514  Sum_probs=40.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCcc--ccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPV--CKRDART  205 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~--CR~~i~~  205 (370)
                      ...|+||++.|.+  .|+.+.|||.|++.||..|+..+ ...||+  ||+.+..
T Consensus       181 el~CPIcl~~f~D--PVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~  232 (267)
T 3htk_C          181 ELTCPITCKPYEA--PLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM  232 (267)
T ss_dssp             CSBCTTTSSBCSS--EEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred             eeECcCccCcccC--CeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence            4689999999875  46667899999999999999863 346999  9987654

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}

Probab=98.10  E-value=2.6e-06  Score=85.92  Aligned_cols=71  Identities=11%  Similarity=0.062  Sum_probs=52.7

Q ss_pred             CCceEEEEEcCCCC---------hHHH----HHHHHHcCCcEEEEeccCCCc---ceeeccC-CCCCceeeEEEEecccc
Q 017521            1 MSSAFVLTIRGGCS---------FEDK----VRNAQKAGFEAAIVYDNEDDG---VLVAMAG-NSAGIKIHAVFVSKASG   63 (370)
Q Consensus         1 l~~~ivLV~RG~Cs---------F~~K----v~nAq~aGA~avIVyn~~~~~---~~~~m~g-~~~~i~IpvVfIs~~~G   63 (370)
                      ++||||||.||.|.         |.+|    +.+|+++||+||||+|+..+.   ....+.+ ......||++.|+..+|
T Consensus       127 vkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~~da  206 (444)
T 3iib_A          127 LNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISNPDA  206 (444)
T ss_dssp             TTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECHHHH
T ss_pred             cCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecHHHH
Confidence            58999999999996         6666    467999999999999875432   1112222 22346799999999999


Q ss_pred             cccccccc
Q 017521           64 EKLKQYAG   71 (370)
Q Consensus        64 e~L~k~l~   71 (370)
                      +.|++.+.
T Consensus       207 ~~L~~~l~  214 (444)
T 3iib_A          207 DLINAMLK  214 (444)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            98876553

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.10  E-value=5.8e-07  Score=87.85  Aligned_cols=44  Identities=27%  Similarity=0.727  Sum_probs=37.1

Q ss_pred             CCcccccccccccCCCeeEEeCCCCc-ccHhHHHHHHhcCCCCCccccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHK-FHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~-FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +...|+||++.+..   ...+||||. ||..|+..|     ..||+||..+..
T Consensus       294 ~~~~C~IC~~~~~~---~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEVS---VVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBCC---EEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCCc---eEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            45789999999864   467899999 999999988     349999998764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.01  E-value=3.4e-06  Score=67.37  Aligned_cols=49  Identities=22%  Similarity=0.424  Sum_probs=40.1

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCC
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTST  207 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~  207 (370)
                      .|.+|--.+.  ...|.+||+|+|+.+|+..|.++....||+|+.+|...+
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe   51 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE   51 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence            5888866654  457999999999999999998876667999999876543

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=97.87  E-value=1.5e-05  Score=80.06  Aligned_cols=72  Identities=26%  Similarity=0.327  Sum_probs=56.3

Q ss_pred             CCceEEEEEcCCC-----ChHHHHHHHHHcCCcEEEEeccCCCccee--eccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGC-----SFEDKVRNAQKAGFEAAIVYDNEDDGVLV--AMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~C-----sF~~Kv~nAq~aGA~avIVyn~~~~~~~~--~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++|||||++||+|     .|.+|+.+++++||++|||||+++...+.  ..........||+++|...+|+.|+.+++.
T Consensus       272 ~~gkivl~~rg~~~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~  350 (441)
T 1y9z_A          272 MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQ  350 (441)
T ss_dssp             CTTEEEEEECCSCSSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTS
T ss_pred             ccccEEEEeccccCcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcC
Confidence            5799999999987     88999999999999999999886532111  111122345799999999999999988765

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=97.74  E-value=2.7e-05  Score=85.21  Aligned_cols=64  Identities=33%  Similarity=0.563  Sum_probs=52.0

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEecccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLK   67 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~   67 (370)
                      ++|||||++||.|+|.+|+.+++++||.++|+||+........+.   ....||+++|.+.+|+.|+
T Consensus       279 v~Gkivl~~rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~---~~~~iP~~~i~~~~g~~l~  342 (926)
T 1xf1_A          279 VKGKIALIERGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELP---NVDQMPAAFISRKDGLLLK  342 (926)
T ss_dssp             CTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECC---CSTTCCEEEECHHHHHHHH
T ss_pred             cCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccC---ccccccEEEEeHHHHHHHH
Confidence            579999999999999999999999999999999987654333322   2346899999988887654

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.70  E-value=2.1e-05  Score=73.00  Aligned_cols=52  Identities=23%  Similarity=0.468  Sum_probs=41.0

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-CCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-RTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-~~~CP~CR~~i~~~~~  208 (370)
                      ...|.||.+-...+..+  -.|+|.||..|++.|++.+ +..||.|+.......+
T Consensus       180 i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~  232 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP  232 (238)
T ss_dssp             CCBCTTTCSBCSSCEEC--SSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCC
T ss_pred             CCcCcchhhHHhCCccc--CccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Confidence            57899999998877433  3499999999999999874 3469999987655443

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=97.55  E-value=3.1e-05  Score=81.61  Aligned_cols=65  Identities=14%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      ++|||||+.||.|.|.+|..+++++||.++|++|++..  +   ..  ....+|+++|...+|+.|+.++..
T Consensus       282 l~GkIvlc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~--~---~~--~~~~~P~~~v~~~~g~~i~~yi~s  346 (649)
T 3i6s_A          282 PENTIVICDDNGDFSDQMRIITRARLKAAIFISEDPGV--F---RS--ATFPNPGVVVNKKEGKQVINYVKN  346 (649)
T ss_dssp             GGGCEEEECCCSCHHHHHHHHHHHTCSEEEEECCCGGG--G---GC--CCCCSCEEEECHHHHHHHHHHHHT
T ss_pred             cCCcEEEEeCCCccHHHHHHHHHhcCceEEEEecCccc--c---cc--ccCcCCEEEEcHHHHHHHHHHHhc
Confidence            38999999999999999999999999999999997722  1   11  234689999999999999887643

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.58  E-value=0.04  Score=40.59  Aligned_cols=45  Identities=29%  Similarity=0.486  Sum_probs=33.3

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC---CCCCcccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~---~~~CP~CR~~  202 (370)
                      ...|.||.+.   ++.|..-.|...||..|++..|...   .=.||.|+..
T Consensus        12 ~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           12 GARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             TCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            4679999753   5555555589999999999888752   2359999754

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.11  E-value=0.04  Score=43.36  Aligned_cols=34  Identities=15%  Similarity=0.368  Sum_probs=27.0

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHH
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW  188 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~W  188 (370)
                      ...|.||++++........+.|+|.|+..|+..|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            4689999987644444556899999999999983

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=89.68  E-value=0.1  Score=39.05  Aligned_cols=51  Identities=20%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i~  204 (370)
                      +...|.||.........|..=.|.-.||..|+..-+..   ..-.||.|+..+.
T Consensus        17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            34679999877543334444458999999999865432   2345999987654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=86.28  E-value=0.17  Score=36.52  Aligned_cols=48  Identities=27%  Similarity=0.464  Sum_probs=33.6

Q ss_pred             CCcccccccccccCC-CeeEEeCCCCcccHhHHHHHHh----cCCCCCccccc
Q 017521          154 TSRTCAICLEDYSVG-EKLRILPCRHKFHAFCVDSWLT----SWRTFCPVCKR  201 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~-~~v~~lpC~H~FH~~Ci~~Wl~----~~~~~CP~CR~  201 (370)
                      +...|.||...+.++ ..|..-.|...||..|+..-..    ...-.||.|+.
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            356899999988644 4455555899999999864322    13456999975

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.74  E-value=0.37  Score=34.64  Aligned_cols=46  Identities=24%  Similarity=0.671  Sum_probs=32.4

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCcccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD  202 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~  202 (370)
                      ....|.||.+.   ++.+..-.|.-.||..|++.-+..   ..-.||.|+..
T Consensus        10 ~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A           10 HQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             CCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            45789999873   455554458899999999975543   23359999753

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=84.28  E-value=0.52  Score=36.26  Aligned_cols=34  Identities=21%  Similarity=0.548  Sum_probs=23.7

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHH
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW  188 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~W  188 (370)
                      .+..|.|| +.|..++....=-|+-+||..|+.+-
T Consensus        14 ~D~~C~VC-~~~t~~~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcccCcc-ccccccceeccccccccccHhhcccc
Confidence            45789999 44555543322238999999999984

>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2

Probab=83.84  E-value=0.4  Score=35.87  Aligned_cols=47  Identities=23%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHH--------hcCCCCCcccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWL--------TSWRTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl--------~~~~~~CP~CR~~  202 (370)
                      ...| ||...+..+..|..-.|...||..|+..-.        ....-.||.|+..
T Consensus        16 ~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~   70 (76)
T 1wem_A           16 ALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL   70 (76)
T ss_dssp             CCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred             CCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence            3567 898887655566655699999999985211        1134569999754

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=83.50  E-value=0.55  Score=48.90  Aligned_cols=57  Identities=9%  Similarity=0.039  Sum_probs=42.2

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcceeeccCCCCCceeeEEEEeccccccccc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGVLVAMAGNSAGIKIHAVFVSKASGEKLKQ   68 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~~~~m~g~~~~i~IpvVfIs~~~Ge~L~k   68 (370)
                      ++|||+|++|+   |..|..+++.+||.++|++++..+..        ....+|.++|...++..++.
T Consensus       280 v~gkivl~~~~---~~~~~~~~~~~Ga~gvi~~~~~~~~~--------~~~~lP~~~v~~~~g~~i~~  336 (621)
T 3vta_A          280 LKGKIVVCEAS---FGPHEFFKSLDGAAGVLMTSNTRDYA--------DSYPLPSSVLDPNDLLATLR  336 (621)
T ss_dssp             TTTSEEECSSC---CCHHHHHHHHTTCSEEEEECSCCSSC--------CCCSSSEEEECHHHHHHHHH
T ss_pred             ccceEEEEecC---CChhHHhhhhcceeEEEEEecCCCcc--------cccccceEEECHHHHHHHHH
Confidence            46899998754   66899999999999999998765421        12347888888777766654

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=82.69  E-value=0.24  Score=35.64  Aligned_cols=47  Identities=26%  Similarity=0.588  Sum_probs=31.8

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCcccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD  202 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~  202 (370)
                      .....|.||.+.   ++.+..-.|...||..|+..-|..   ..-.||.|+..
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence            346789999853   444444448899999999864443   22359999764

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=82.58  E-value=0.47  Score=32.53  Aligned_cols=45  Identities=24%  Similarity=0.571  Sum_probs=30.1

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCccccc
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKR  201 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~  201 (370)
                      .|.||.+.-..++.+..-.|...||..|+++=|..   ..-.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            48899876444444554458999999999753332   1234999964

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=81.73  E-value=0.25  Score=44.21  Aligned_cols=48  Identities=27%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CCCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCccccccc
Q 017521          153 CTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRDA  203 (370)
Q Consensus       153 ~~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~i  203 (370)
                      ..+..|.||.+.   ++.+..=.|...||..|+++.|..   ..-.||.|+..-
T Consensus         5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            345789999754   443333348899999999876654   223599997643

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=81.49  E-value=0.35  Score=42.73  Aligned_cols=48  Identities=19%  Similarity=0.421  Sum_probs=33.7

Q ss_pred             CcccccccccccCCC----eeEEeCCCCcccHhHHHHH------Hhc----CCCCCcccccc
Q 017521          155 SRTCAICLEDYSVGE----KLRILPCRHKFHAFCVDSW------LTS----WRTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~----~v~~lpC~H~FH~~Ci~~W------l~~----~~~~CP~CR~~  202 (370)
                      +..|+||...|.+++    .|..--|...||..|+..-      +..    ..-.||.|+..
T Consensus         2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~   63 (183)
T 3lqh_A            2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER   63 (183)
T ss_dssp             CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred             cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence            356999999998876    4555559999999997421      110    13459999764

>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}

Probab=81.00  E-value=0.39  Score=38.54  Aligned_cols=47  Identities=26%  Similarity=0.599  Sum_probs=31.8

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCcccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCK  200 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR  200 (370)
                      ++..|.||.+.-+..+.+.--.|...||..|++.++..   ..-.||.|+
T Consensus         6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            6 SGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            35789999876433334565669999999999877642   223366654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-14
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-12
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	2e-11
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	5e-11
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-10
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	5e-09
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	8e-09
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-08
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	2e-06
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-06
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-06
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	9e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 64.1 bits (156), Expect = 4e-14
 Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 157 TCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            CA+CL +   GE+ R LP C H FHA CVD WL S  T CP+C+  
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHST-CPLCRLT 52

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 4e-12
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 149 VEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS 206
            E   T + C IC E+    + ++I PC H     C+ SW  S    CP C+ + + +
Sbjct: 17  CEMGSTFQLCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 71

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 2e-11
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)

Query: 156 RTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDSWLTSWRTFCPVCKRDAR 204
           + C  C         L+++   C H     CVD         CP C    R
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 5e-11
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 158 CAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
           C +C+E   + +       C ++   FC     T     CP C++ 
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKP 48

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRD 202
            +  C ICLED S       LPC H F   C+  W+    T CP+CK  
Sbjct: 4   VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPT-CPLCKVP 49

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 5e-09
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 16/66 (24%)

Query: 152 NCTSRTCAICLEDY---------------SVGEKLRILPCRHKFHAFCVDSWLTSWRTFC 196
           +     CAIC                   S    +    C H FH  C+  WL + +  C
Sbjct: 18  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-C 76

Query: 197 PVCKRD 202
           P+  R+
Sbjct: 77  PLDNRE 82

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 8e-09
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP 210
            C  C  +    +  ++LPC H   + C+++        CP+C+         P
Sbjct: 8   RCQQCQAEA---KCPKLLPCLHTLCSGCLEASGMQ----CPICQAPWPLGADTP 54

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 48.3 bits (114), Expect = 2e-08
 Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 156 RTCAICLEDYSVGEKL--RILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDART 205
             C IC E+                  H  C+ +WLT    T C +C     T
Sbjct: 7   PVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS-------WRTFCPVCK 200
           S  C +CL +Y V +   I  C+  F   C+  ++             CP   
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 142 SLIFTAVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKR 201
            L+          S +C IC              C+H F   C+   L    ++CP C+ 
Sbjct: 10  KLLAVDFPAHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRY 66

Query: 202 DARTSTGEPPA 212
               +  E P 
Sbjct: 67  PCFPTDLESPV 77

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 5/48 (10%)

Query: 157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRT--FCPVCKRD 202
            C ICLE     ++     C H F  FC+   L   +    CP+CK D
Sbjct: 23  ECPICLELI---KEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 9e-06
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 20/94 (21%)

Query: 151 DNCTSRTCAICLEDYSV---------------GEKLRILPCRHKFHAFCVDSWLTS---- 191
                  C IC+E  +V                   R+  C H FH  C+ +   +    
Sbjct: 21  KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKD 80

Query: 192 WRTFCPVCKRDARTSTGEPPASESTPLLSSSPAS 225
               CP CK      TG  P  +   +  S P+S
Sbjct: 81  GSLQCPSCKTIYGEKTGTQPWGKME-VFRSGPSS 113

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 3e-04
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 147 AVVEDNCTSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFC--PVCKRDAR 204
           A ++       C+ C           +  C H F + CV   + +    C  P   +D +
Sbjct: 14  AALDRLEKLLRCSRCTNILREPV--CLGGCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLK 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.61
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.46
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.45
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.43
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.38
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.36
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.35
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.22
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.16
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.05
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.03
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.03
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.9
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.89
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.82
d1de4c2	193	Transferrin receptor ectodomain, apical domain {Hu	98.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.48
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.47
d3bi1a2	233	Glutamate carboxypeptidase II {Human (Homo sapiens	98.29
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	92.46
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.0
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	87.26
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	86.88
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	84.15
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	81.87

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.61  E-value=9.2e-17  Score=114.76  Aligned_cols=49  Identities=47%  Similarity=1.023  Sum_probs=43.9

Q ss_pred             CcccccccccccCCCeeEEeC-CCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILP-CRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lp-C~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      +.+|+|||++|..++.++.++ |+|.||..||++||++++ +||+||++|.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~-~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS-TCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC-SCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC-cCCCCCCEeE
Confidence            467999999999999998886 999999999999999855 5999999874

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=5.6e-14  Score=114.33  Aligned_cols=62  Identities=29%  Similarity=0.555  Sum_probs=48.0

Q ss_pred             CcccccccccccC---------------CCeeEEeCCCCcccHhHHHHHHhcC----CCCCcccccccccCCCCCCCCCC
Q 017521          155 SRTCAICLEDYSV---------------GEKLRILPCRHKFHAFCVDSWLTSW----RTFCPVCKRDARTSTGEPPASES  215 (370)
Q Consensus       155 ~~~C~ICLe~~~~---------------~~~v~~lpC~H~FH~~Ci~~Wl~~~----~~~CP~CR~~i~~~~~~~~~~~~  215 (370)
                      +..|+||+++|..               .+.+++++|+|+||..||+.||...    +.+||+||..+.......|+.+.
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~~qP~~~~  104 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKM  104 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSSSCTTSSC
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcCCCCCCce
Confidence            4679999999854               2346778899999999999999863    23699999998887766655443


Q ss_pred             C
Q 017521          216 T  216 (370)
Q Consensus       216 ~  216 (370)
                      .
T Consensus       105 ~  105 (114)
T d1v87a_         105 E  105 (114)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.9e-15  Score=103.30  Aligned_cols=49  Identities=20%  Similarity=0.569  Sum_probs=42.0

Q ss_pred             ccccccccccCCCe-eEEeCCCCcccHhHHHHHHhcCCCCCccccccccc
Q 017521          157 TCAICLEDYSVGEK-LRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDART  205 (370)
Q Consensus       157 ~C~ICLe~~~~~~~-v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~  205 (370)
                      +|+||+++|..++. ++.++|+|.||..||++|++..+..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            69999999987654 45668999999999999998766679999998865

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.43  E-value=4e-14  Score=105.04  Aligned_cols=49  Identities=37%  Similarity=0.815  Sum_probs=41.9

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      .+.|+||++.|.+  .++.++|+|.||..||.+|+++++ +||+||.++...
T Consensus         5 ~d~C~IC~~~~~~--~~~~~~C~H~Fc~~Ci~~w~~~~~-~CP~CR~~i~~~   53 (68)
T d1chca_           5 AERCPICLEDPSN--YSMALPCLHAFCYVCITRWIRQNP-TCPLCKVPVESV   53 (68)
T ss_dssp             CCCCSSCCSCCCS--CEEETTTTEEESTTHHHHHHHHSC-STTTTCCCCCCE
T ss_pred             CCCCccCCcCccC--CcEEeCCCCcCcHHHHHHHHHhCC-cCCCCCcchHhh
Confidence            4679999999864  467899999999999999999855 599999987653

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=101.33  Aligned_cols=53  Identities=26%  Similarity=0.453  Sum_probs=42.3

Q ss_pred             CCcccccccccccCC--CeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVG--EKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~--~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ++..|+||++++..+  ..+.+++|+|.||..||.+|+...+..||+||+.+...
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            357899999986433  34566789999999999999987555699999987653

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.8e-13  Score=105.40  Aligned_cols=50  Identities=28%  Similarity=0.627  Sum_probs=41.3

Q ss_pred             CCcccccccccccCCC---------------eeEEeCCCCcccHhHHHHHHhcCCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGE---------------KLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~---------------~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~  204 (370)
                      ..+.|+||++++....               .+..++|+|+||..||++||+.++ +||+||++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR~~~~   84 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPLDNREWE   84 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS-BCSSSCSBCC
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC-cCCCCCCccc
Confidence            4567999999886532               467889999999999999999855 5999998764

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.8e-13  Score=103.41  Aligned_cols=51  Identities=29%  Similarity=0.673  Sum_probs=42.8

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      ...|+||++.+..   .+++||||.||..||..||..+...||+||..|.....
T Consensus        23 ~~~C~IC~~~~~~---~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          23 FQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TTBCTTTSSSBCC---EECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCCC
T ss_pred             CCCCccCCCcCCC---eEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCce
Confidence            3579999998764   57899999999999999998655569999999976543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=2.7e-12  Score=99.35  Aligned_cols=53  Identities=25%  Similarity=0.520  Sum_probs=44.0

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTGEP  210 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~~~  210 (370)
                      ...|+||++.|.+.   .+++|||.|+..||..|++.++..||+||.++......+
T Consensus        23 ~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~   75 (86)
T d1rmda2          23 SISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES   75 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBC
T ss_pred             CcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccC
Confidence            36899999998753   678999999999999999876667999999887655443

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=2.2e-12  Score=91.95  Aligned_cols=47  Identities=21%  Similarity=0.575  Sum_probs=38.9

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      ...|+||++.|.+.   ++|||||.||..||+.|    +..||+||+++.....
T Consensus         6 ~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~   52 (56)
T d1bora_           6 FLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGAD   52 (56)
T ss_dssp             CSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSS
T ss_pred             CCCCcccCcccCCC---EEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCC
Confidence            46899999999765   67899999999999876    4459999999876543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=2.1e-11  Score=86.64  Aligned_cols=49  Identities=12%  Similarity=0.059  Sum_probs=40.1

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccCCC
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTSTG  208 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~~~  208 (370)
                      .|+||++.|++.  |....|||+||..||.+||++++ .||+||+++...+.
T Consensus         2 ~C~Ic~~~~~~P--v~~~~cGh~fc~~cI~~~l~~~~-~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPRRP--VLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCSSE--EEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCCGGGC
T ss_pred             CCccCCchHHhc--CccCCCCCcccHHHHHHHHhhcc-CCCccCCcCCHHhc
Confidence            599999998754  44445999999999999999855 59999998876543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.03  E-value=5.1e-11  Score=85.69  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=37.7

Q ss_pred             CCcccccccccccCCCee--EEeCCCCcccHhHHHHHHhc-CCCCCcccccccc
Q 017521          154 TSRTCAICLEDYSVGEKL--RILPCRHKFHAFCVDSWLTS-WRTFCPVCKRDAR  204 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v--~~lpC~H~FH~~Ci~~Wl~~-~~~~CP~CR~~i~  204 (370)
                      +...|.||++++......  ....|+|.||..||..|+.. ++.+||+||+.+.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            457899999998654211  11224599999999999975 4557999998765

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-11  Score=94.78  Aligned_cols=48  Identities=33%  Similarity=0.674  Sum_probs=40.0

Q ss_pred             cccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCC--CCCcccccccccC
Q 017521          156 RTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWR--TFCPVCKRDARTS  206 (370)
Q Consensus       156 ~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~--~~CP~CR~~i~~~  206 (370)
                      ..|+||++.|.+.   ..++|||.||..||..|+...+  ..||+||..+...
T Consensus        22 l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   71 (103)
T d1jm7a_          22 LECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR   71 (103)
T ss_dssp             TSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT
T ss_pred             cCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChh
Confidence            5799999999765   4589999999999999998743  4699999987543

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.6e-10  Score=86.59  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=42.7

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|.+.   .+++|||.|+..||..|+.+.+..||+||..+...
T Consensus         6 ~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~   55 (80)
T d2c2la2           6 DYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE   55 (80)
T ss_dssp             STTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             ccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccccc
Confidence            457899999999865   47899999999999999987666799999987653

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.89  E-value=4.5e-10  Score=84.75  Aligned_cols=50  Identities=18%  Similarity=0.337  Sum_probs=42.8

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|.+.   ++++|||.|+..||..|+..+...||.|+..+...
T Consensus         7 ~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~   56 (78)
T d1t1ha_           7 EYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             ccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCcc
Confidence            457999999999765   57899999999999999988666799999887654

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=3.5e-10  Score=88.92  Aligned_cols=47  Identities=26%  Similarity=0.494  Sum_probs=38.5

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      ...|+||++.|...  +...+|||.||..||..|+..   .||+||..+...
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCS
T ss_pred             cCCCccCCchhhcC--ceeCCCCCchhHHHHHHHHhc---cccccCCcCchh
Confidence            36899999999754  555689999999999999854   499999877543

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Transferrin receptor ectodomain, apical domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.1e-08  Score=86.02  Aligned_cols=72  Identities=21%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEeccCCCcc-------ee----eccCCC-------------------CC
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDNEDDGV-------LV----AMAGNS-------------------AG   50 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~~~~~~-------~~----~m~g~~-------------------~~   50 (370)
                      ++||||||+||++.|.+|++|||++||+|||||.+-.+..       ..    ...||+                   ..
T Consensus        61 v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~d~~~~~~~~~~~g~~~~~~GDPlTPg~ps~~~~~~~~~~~~~l  140 (193)
T d1de4c2          61 VNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQTKFPIVNAELSFFGHAHLGTGDPYTPGFPSFNHTQFPPSRSSGL  140 (193)
T ss_dssp             CTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTTTSCCSCTTCCCCEECCSSSSCTTSTTSCCCGGGTCCSCCCTTS
T ss_pred             cCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCccccCCcCcccccccccccCCCCCCCCCcccccccccCccccCCC
Confidence            5899999999999999999999999999999997632210       00    011211                   12


Q ss_pred             ceeeEEEEeccccccccccccc
Q 017521           51 IKIHAVFVSKASGEKLKQYAGS   72 (370)
Q Consensus        51 i~IpvVfIs~~~Ge~L~k~l~~   72 (370)
                      .+||+.-|+..+++.|.+.++-
T Consensus       141 P~IP~~PIS~~dA~~lL~~L~G  162 (193)
T d1de4c2         141 PNIPVQTISRAAAEKLFGNMEG  162 (193)
T ss_dssp             CSSCEEECCHHHHHHHHTTBCS
T ss_pred             CcCCeeeCCHHHHHHHHHHcCC
Confidence            3689999999999888777753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=2.6e-08  Score=77.28  Aligned_cols=47  Identities=26%  Similarity=0.642  Sum_probs=38.2

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC-------CCCCcccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW-------RTFCPVCK  200 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~-------~~~CP~CR  200 (370)
                      +...|+||++++...+.++.++|+|.||.+||..|++..       ...||.|+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            457899999999877777777899999999999999741       22499864

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.5e-08  Score=77.52  Aligned_cols=49  Identities=12%  Similarity=-0.023  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCCeeEEeCCC-CcccHhHHHHHHhcCCCCCcccccccccC
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCR-HKFHAFCVDSWLTSWRTFCPVCKRDARTS  206 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~-H~FH~~Ci~~Wl~~~~~~CP~CR~~i~~~  206 (370)
                      +...|+||++-|.+.   ++++|+ |.|.+.||..||..+. .||+||.++...
T Consensus        21 ~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~-~~P~~~~~l~~~   70 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMD   70 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCCTT
T ss_pred             HHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcC-Ccccccccccch
Confidence            358999999999875   678865 5899999999998855 599999988654

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: PA domain
family: PA domain
domain: Glutamate carboxypeptidase II
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.7e-07  Score=82.08  Aligned_cols=35  Identities=34%  Similarity=0.446  Sum_probs=33.6

Q ss_pred             CCceEEEEEcCCCChHHHHHHHHHcCCcEEEEecc
Q 017521            1 MSSAFVLTIRGGCSFEDKVRNAQKAGFEAAIVYDN   35 (370)
Q Consensus         1 l~~~ivLV~RG~CsF~~Kv~nAq~aGA~avIVyn~   35 (370)
                      ++||||||++|++.+.+|+++||++||+|||||++
T Consensus        79 ~~gkIvl~ryG~~~~~~Kv~~A~~~GA~GviiysD  113 (233)
T d3bi1a2          79 CSGKIVIARYGKVFRGNKVKNAQLAGAKGVILYSD  113 (233)
T ss_dssp             CTTCEEEEECCSSCHHHHHHHHHHTTCSEEEEECC
T ss_pred             ccceEEEEeCCCCchhHHHHHHHHcCceEEEEecC
Confidence            58999999999999999999999999999999986

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.02  Score=37.99  Aligned_cols=45  Identities=24%  Similarity=0.581  Sum_probs=31.0

Q ss_pred             ccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC---CCCCccccc
Q 017521          157 TCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKR  201 (370)
Q Consensus       157 ~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~---~~~CP~CR~  201 (370)
                      .|.||...-..++.|.--.|...||..|++.-+...   .=.||.||.
T Consensus         2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488997765444444444489999999999866541   224999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.00  E-value=0.058  Score=37.37  Aligned_cols=48  Identities=29%  Similarity=0.544  Sum_probs=33.6

Q ss_pred             CCcccccccccccCCCe-eEEeCCCCcccHhHHHH---HHhc-CCCCCccccc
Q 017521          154 TSRTCAICLEDYSVGEK-LRILPCRHKFHAFCVDS---WLTS-WRTFCPVCKR  201 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~-v~~lpC~H~FH~~Ci~~---Wl~~-~~~~CP~CR~  201 (370)
                      ....|.||.+.+..++. |..-.|+..||..|+..   .... .+-.||.|+.
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~   57 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcC
Confidence            35689999998877654 44445999999999863   1111 2345999975

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.26  E-value=0.086  Score=38.04  Aligned_cols=47  Identities=17%  Similarity=0.376  Sum_probs=30.3

Q ss_pred             CcccccccccccCCCeeEEe--CCCCcccHhHHHH----HHhc----CCCCCcccccc
Q 017521          155 SRTCAICLEDYSVGEKLRIL--PCRHKFHAFCVDS----WLTS----WRTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~l--pC~H~FH~~Ci~~----Wl~~----~~~~CP~CR~~  202 (370)
                      ...| ||.+....++.+..-  .|...||..|+.-    ....    .+-.||.|+..
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCc
Confidence            3567 899887665544433  3899999999842    1010    12459999753

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.88  E-value=0.15  Score=37.12  Aligned_cols=34  Identities=21%  Similarity=0.548  Sum_probs=24.9

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHH
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSW  188 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~W  188 (370)
                      .+..|.|| +.|...+....=-|+-+||..|+.+-
T Consensus        14 ~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          14 NDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             cCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            46789999 77776643322227899999999985

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.091  Score=36.06  Aligned_cols=46  Identities=26%  Similarity=0.611  Sum_probs=31.6

Q ss_pred             CCcccccccccccCCCeeEEeCCCCcccHhHHHHHHhc---CCCCCcccccc
Q 017521          154 TSRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTS---WRTFCPVCKRD  202 (370)
Q Consensus       154 ~~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~---~~~~CP~CR~~  202 (370)
                      ....|.||.+.   ++.|..=.|.-.||..|++..+..   ..-.||.|+..
T Consensus         8 ~~~~C~~C~~~---g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~   56 (61)
T d1mm2a_           8 HMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CcCCCcCCCCC---CeEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCc
Confidence            34679999753   444444458899999999865553   23359999754

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=0.23  Score=34.91  Aligned_cols=45  Identities=22%  Similarity=0.453  Sum_probs=30.7

Q ss_pred             CcccccccccccCCCeeEEeCCCCcccHhHHHHHHhcC---CCCCcccccc
Q 017521          155 SRTCAICLEDYSVGEKLRILPCRHKFHAFCVDSWLTSW---RTFCPVCKRD  202 (370)
Q Consensus       155 ~~~C~ICLe~~~~~~~v~~lpC~H~FH~~Ci~~Wl~~~---~~~CP~CR~~  202 (370)
                      ...|.||.+   .++.|..=.|...||..|+.+.+...   .-.||.|+..
T Consensus         7 c~~C~~C~~---~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           7 ATICRVCQK---PGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSCCSSSCS---SSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCC---cCEEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            456777764   35544444589999999999876542   2349999653