Citrus Sinensis ID: 017523

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDKSSIVDANEMIE
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHEEcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccccHHcccccccccccccccccccccccccccccccccccccccccccHccc
Coil and Loop (DISEMBL)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAllkgpklvneefippkslifssgadnWLLGCFLLFGSSWFWSFWMILQVpisssipnhsysSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWcisergplfcamfnPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWgkaedleeiehktdtklqndqTRTVQVVieepsvkksyknnleepllsdkssivdanemie
Flexible Loop (DISEMBL)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHktdtklqndqtrtvqvvieepsvkksyknnleepllsdkssivdanemie
Low Complexity Region (SEG)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLfgsswfwsfwMILQVpisssipnhsyssAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDKSSIVDANEMIE
Disordered region (IsUnstruct)
***VALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLE******************************************************
Disordered Region (DISOPRED)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF************DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG************************************************************
Disordered Region (DISEMBL)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDKSSIVDANEMIE
Disordered Region (DISPRO)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEE*************DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE*********************************************************
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDKSSIVDANEMIE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
Q9M0B8	373	WAT1-related protein At4g	yes	no	0.964	0.957	0.513	1e-102
Q9SUD5	359	WAT1-related protein At4g	no	no	0.927	0.955	0.508	1e-99
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.964	0.917	0.352	8e-57
Q6J163	410	Auxin-induced protein 5NG	N/A	no	0.962	0.868	0.350	1e-55
Q9LV20	383	WAT1-related protein At3g	no	no	0.870	0.840	0.357	7e-53
O80638	374	WAT1-related protein At2g	no	no	0.821	0.812	0.363	1e-50
F4HZQ7	389	WAT1-related protein At1g	no	no	0.872	0.830	0.337	5e-50
Q9FL41	402	WAT1-related protein At5g	no	no	0.948	0.873	0.322	3e-49
Q9ZUS1	380	WAT1-related protein At2g	no	no	0.924	0.9	0.321	3e-48
Q8GXB4	374	WAT1-related protein At1g	no	no	0.827	0.818	0.347	4e-48

>sp|Q9M0B8|WTR37_ARATH WAT1-related protein At4g30420 OS=Arabidopsis thaliana GN=At4g30420 PE=3 SV=1

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/366 (51%), Positives = 255/366 (69%), Gaps = 9/366 (2%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLS-L 59
           MAM  +Q  YAGV LF R  LV GLSPRVF++YRQ  A + + P +Y+S RKS   +S L
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 60  GLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHN 119
            L++F  +F+ SLIG+T NQN Y EGLYL+SS++ SA+ N++PA+TF+++F+AG+EK++ 
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 120 RSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP--KSLIFSSGADN-WLLGCFLL 176
           R +R +AKI GTI CV GAI+M LL+GPK++N E   P  KS++      N WL+GC  L
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 177 FGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLE 236
           F S+  WSFW+ILQVPIS+  P++   SAWMC   +++ A V   +EK+  AW L+S+ E
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query: 237 LACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLI 295
            A CLY+GI A A+SF +QAW I++RGP+F A+FNPLCTVIVT+LA LF  EEI+ GSLI
Sbjct: 241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTGSLI 300

Query: 296 GAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPL 355
           G   VI+GLY VLWGKA+D+   + + D    NDQ   V++ IE+ S       +L+ PL
Sbjct: 301 GGLGVILGLYTVLWGKAKDVMMNQDQRD----NDQKSEVKIHIEDSSNTTICNKDLKNPL 356

Query: 356 LSDKSS 361
           LS   S
Sbjct: 357 LSKHKS 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUD5|WTR36_ARATH WAT1-related protein At4g28040 OS=Arabidopsis thaliana GN=At4g28040 PE=2 SV=1

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 184/362 (50%), Positives = 256/362 (70%), Gaps = 19/362 (5%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +A+V LQF  AGVALFT+ A ++GL+P VFVVYRQ  A L + PI +IS  +   + SLG
Sbjct: 10  LALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWRKENKPSLG 69

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           +R F W+ + ++IGVT NQNAYF+G+ LSSS++A AMTNL+PAVTF+++ I G+E +  R
Sbjct: 70  VRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIVGFESIKRR 129

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           S++S+AK++GT  CVGGA+ M  L+GPKL+N         + +     WLLGCF L  S+
Sbjct: 130 SMKSVAKVIGTGVCVGGAMAMTFLRGPKLLNA--------LLNQDNTAWLLGCFFLLIST 181

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVAL-LVEKNLEAWTLNSFLELAC 239
           + WS W+ILQVPI+S  P+H Y+SA  CF+A++ S  VAL L   +L  W L+SFL+L+C
Sbjct: 182 FAWSLWLILQVPIASHCPDHLYTSACTCFIATIASFLVALALGNTHLPPWKLDSFLKLSC 241

Query: 240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299
           C+YSG  LAISFFLQAW +S++GP+F A+FNPL  VIVT    L+L E+ ++GSL+GA A
Sbjct: 242 CIYSGFQLAISFFLQAWIVSQKGPVFSALFNPLSAVIVTFFGALYLKEQTYLGSLLGALA 301

Query: 300 VIIGLYVVLWGKAEDLEEIEHKTDTKLQND-----QTRTVQVVIEEPSVKKSYKNNLEEP 354
           +I+GLY+VLWGK+ED +  E  TD KL+N+     Q+  V ++I + + + S    L EP
Sbjct: 302 IILGLYIVLWGKSEDYQ--EESTDLKLENEHNTSSQSDIVSIMIGDKAFRSS---ELLEP 356

Query: 355 LL 356
           LL
Sbjct: 357 LL 358

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  221 bits (563), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 132/374 (35%), Positives = 201/374 (53%), Gaps = 17/374 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AM+ LQF YAG  + +R AL  G+S  VF VYR   A L++ P  Y   +K   R ++ 
Sbjct: 22  IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKE--RPAIT 79

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           L      F  +LIG+TANQ  Y  GL  +S T AS+M N +PA+TF+MA +   EKV   
Sbjct: 80  LNFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRIN 139

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKL------VNEEFIPPKSLIFS----SGADNWL 170
               I+KILGT  CV GA  + L KGP +      ++   +   S + +    +   NW 
Sbjct: 140 RRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWT 199

Query: 171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT 230
           LGC  L G    WS W++ Q P+  S P     +++ CF   ++   +A   E++ +AW 
Sbjct: 200 LGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWV 259

Query: 231 LNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
            +S  EL   LY+GI A  I+F +Q WCI   GP+F A++ P+ T++V ++A + L EE 
Sbjct: 260 FHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEF 319

Query: 290 FMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKN 349
           ++G +IGA  +I GLY VL+GK+E+  +        +Q+     ++     P  + S K+
Sbjct: 320 YLGGIIGAVLIIAGLYFVLYGKSEE-RKFAALEKAAIQSSAEHGIE---RAPVSRNSIKS 375

Query: 350 NLEEPLLSDKSSIV 363
           ++  PLL   +  V
Sbjct: 376 SITTPLLHQSTDNV 389

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6J163|5NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1

 Score =  217 bits (553), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/377 (35%), Positives = 205/377 (54%), Gaps = 21/377 (5%)

Query: 2   AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGL 61
           AM+ALQF YAG  + +R AL  G+S  VF VYR   A +++ P  Y   +K   R +L L
Sbjct: 22  AMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKE--RPALTL 79

Query: 62  RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRS 121
                 F+ +L G+T         + L   T ASA+ N +PA+TF+MA     EKVH   
Sbjct: 80  SFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISR 139

Query: 122 LRSIAKILGTIFCVGGAITMALLKGPKLVN----------EEFIPPKSLIFSSGADNWLL 171
              +AKI+GT+ CV GA  + L KGP + +            F   +    S+ ++NW L
Sbjct: 140 RDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTL 199

Query: 172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTL 231
           GC  L G+   WS W++LQ P+    P     +++ CF   ++   +A   E +LE W +
Sbjct: 200 GCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKI 259

Query: 232 NSFLELACCLYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIF 290
           +S  EL   LY+G +A  I+F +Q WCI   GP+F A++ P+ T+ V ++A + L E+ +
Sbjct: 260 HSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFY 319

Query: 291 MGSLIGAFAVIIGLYVVLWGKAED--LEEIEHKTDTKLQN-----DQTRTVQVVIEEPSV 343
           +G + GA  +IIGLY+VLWGK+E+  L  ++ K+    +N     DQ+ T+ ++     +
Sbjct: 320 LGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATL-IINSSNGI 378

Query: 344 KKSYKNNLEEPLLSDKS 360
           K +  ++L +PLL D S
Sbjct: 379 KPNTSSSLTQPLLLDTS 395

Pinus taeda (taxid: 3352)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  207 bits (528), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/330 (35%), Positives = 189/330 (57%), Gaps = 8/330 (2%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +A++ LQF +AG  + +RVAL  G+S  V+ VYR   A L++ P  Y   +K    L++ 
Sbjct: 37  VALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPPLTIS 96

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           L      F  +LIG+TANQ  Y  GLY ++ T ASAM N +PA+TF+MA     E +   
Sbjct: 97  L--LAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLV 154

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF-IPPKSLIFSSGADNWLLGCFLLFGS 179
               +AK+LGT+  +GGA  + L +G  + ++   +  + ++ S  + +  LG   L G 
Sbjct: 155 RKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLMGH 214

Query: 180 SWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELAC 239
              W+ WM+LQ P+    P     +++ CF   ++   +AL VE +L  W + S+ EL  
Sbjct: 215 CLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFT 274

Query: 240 CLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAF 298
            LY+GI A  +  +LQ WCI + GP+F A+F PL T++V  +A L L ++++ G ++GA 
Sbjct: 275 ILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAV 334

Query: 299 AVIIGLYVVLWGKAED----LEEIEHKTDT 324
            +++GLY+VLWGK E+    LEE +   ++
Sbjct: 335 FIMLGLYLVLWGKNEERKLALEESQQDPES 364

Arabidopsis thaliana (taxid: 3702)

>sp|O80638|WTR14_ARATH WAT1-related protein At2g39510 OS=Arabidopsis thaliana GN=At2g39510 PE=2 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 119/327 (36%), Positives = 186/327 (56%), Gaps = 23/327 (7%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           + +V+LQF YAG+++  + AL QG+SP V   YR   A + +AP  Y   RK   +++L 
Sbjct: 10  ITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMTLS 69

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           +  F  + +  L+  T +QN Y+ G+  +S+T  +AMTN++PA  F+MA+I   EKV+ +
Sbjct: 70  I--FFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVK 127

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL-----------IFSSGADNW 169
            + S AKILGTI  VGGA+ M ++KGP L+   +  P  +             + GA   
Sbjct: 128 KIHSQAKILGTIVTVGGAMLMTVVKGP-LIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query: 170 LLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEK-NLEA 228
            +GC         W+ ++ LQ     S P     +A++CFL S+ES  VAL +E+ N  A
Sbjct: 187 AIGCIC-------WAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSA 239

Query: 229 WTLNSFLELACCLYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDE 287
           W ++   +L   +Y G I   I +++Q   +  RGP+F   FNPL  VIV +L  + L E
Sbjct: 240 WAIHLDSKLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAE 299

Query: 288 EIFMGSLIGAFAVIIGLYVVLWGKAED 314
            +F+G ++GA  +++GLY VLWGK++D
Sbjct: 300 VMFLGRILGAIVIVLGLYSVLWGKSKD 326

Arabidopsis thaliana (taxid: 3702)

>sp|F4HZQ7|WTR5_ARATH WAT1-related protein At1g21890 OS=Arabidopsis thaliana GN=At1g21890 PE=2 SV=1

 Score =  198 bits (504), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 114/338 (33%), Positives = 176/338 (52%), Gaps = 15/338 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AM+++QF YAG+ + T V+L  G++  V  VYR   A  ++AP      RK   R  + 
Sbjct: 13  LAMISMQFGYAGMYIITMVSLKHGMNHYVLAVYRHAIATAVIAPFALFHERK--IRPKMT 70

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
            R F  + +   I    +QN Y+ G+  +S+T ASA  N++PA+TFV+A I   E V+ +
Sbjct: 71  FRIFLQIALLGFIEPVLDQNLYYVGMTYTSATFASATANVLPAITFVLAIIFRLESVNFK 130

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA------------DN 168
            +RSIAK++GT+  V GA+ M L KGP +    F                         +
Sbjct: 131 KVRSIAKVVGTVITVSGALLMTLYKGPIVDFIRFGGGGGGGSDGAGGSHGGAGAAAMDKH 190

Query: 169 WLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEA 228
           W+ G  +L G ++ W+ + ILQ       P     +  +C + +LE   V+L+  ++L A
Sbjct: 191 WIPGTLMLLGRTFGWAGFFILQSFTLKQYPAELSLTTLICLMGTLEGTAVSLVTVRDLSA 250

Query: 229 WTLNSFLELACCLYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDE 287
           W +     L    YSG I   +++++Q   + ERGP+F A FNPLC VI   L  + L E
Sbjct: 251 WKIGFDSNLFAAAYSGVICSGVAYYVQGVVMRERGPVFVATFNPLCVVITAALGVVVLSE 310

Query: 288 EIFMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTK 325
            I +GS+IG   +I+GLY V+WGK +D    +   D K
Sbjct: 311 SIHLGSVIGTLFIIVGLYTVVWGKGKDKRMTDDDEDCK 348

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  196 bits (497), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/384 (32%), Positives = 203/384 (52%), Gaps = 33/384 (8%)

Query: 2   AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGL 61
           AM++LQF YAG+ + T+++L  G+S  V VVYR   A  ++AP  +   RK+  +++  +
Sbjct: 21  AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSI 80

Query: 62  RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRS 121
             F  LF+  L+G   +QN Y+ GL  +S T + AM+N++PA+TF++A +   E +  + 
Sbjct: 81  --FMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKK 138

Query: 122 LRSIAKILGTIFCVGGAITMALLKGP----------KLVNEEFIPPKSLIFSSGADNWLL 171
           L   AKI GT+  V GA+ M + KGP           + +       S   SS    +L 
Sbjct: 139 LWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLK 198

Query: 172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYS-SAWMCFLASLESATVALLVEKNLEAWT 230
           G  LL  ++  W+   +LQ  I  +   H  S +  +CF+ +L++  V  ++E N  AW 
Sbjct: 199 GSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWR 258

Query: 231 LNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
           +   + L    YSGI A +IS+++Q   + +RGP+F   F+PL  VIV V+    L E+I
Sbjct: 259 IGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKI 318

Query: 290 FMGSLIGAFAVIIGLYVVLWGKAED-----------------LEEIE-HKTDTKL-QNDQ 330
           F+G +IGA  ++IGLY VLWGK ++                  E++E + +  K+ + D 
Sbjct: 319 FLGGVIGAVLIVIGLYAVLWGKQKENQVTICELAKIDSNSKVTEDVEANGSKMKISEGDN 378

Query: 331 TRTVQVVIEEPSVKKSYKNNLEEP 354
           +    +VI  P  +   K  ++EP
Sbjct: 379 SMLSTIVISVPLSETHLKKTIQEP 402

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUS1|WTR13_ARATH WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/364 (32%), Positives = 211/364 (57%), Gaps = 22/364 (6%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           ++MV LQ   AG+ + ++  L +G+S  V VVYR   A ++MAP  +   +K   +++L 
Sbjct: 17  ISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKKVRPKMTLM 76

Query: 61  LRTFGWLFVASLIGV---TANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKV 117
           +      F  SL+G+     +QN Y+ G+  +++T A+AM N++PA+TFV+A+I G E+V
Sbjct: 77  I-----FFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERV 131

Query: 118 HNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD--NWLLGCFL 175
             R +RS  K++GT+  VGGA+ M L+KGP L +  +    S   ++G D  + + G  L
Sbjct: 132 KLRCIRSTGKVVGTLATVGGAMIMTLVKGPVL-DLFWTKGVSAHNTAGTDIHSAIKGAVL 190

Query: 176 LFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEK-NLEAWTLNSF 234
           +    + ++ +MILQ     + P     +AW+C + ++E   VAL++EK N  AW +   
Sbjct: 191 VTIGCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWD 250

Query: 235 LELACCLYSGIAL-AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGS 293
            +L    YSGI   A+++++    +  RGP+F   F+PLC +IV +++ +   E++++G 
Sbjct: 251 TKLLTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGR 310

Query: 294 LIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEE 353
           ++GA  +  GLY+V+WGK +D     +K ++ LQ D   + Q  +E   +  + K+N++ 
Sbjct: 311 VLGAVVICAGLYLVIWGKGKD-----YKYNSTLQLDD-ESAQPKLE---LSGNGKDNVDH 361

Query: 354 PLLS 357
            +++
Sbjct: 362 EVIT 365

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXB4|WTR2_ARATH WAT1-related protein At1g09380 OS=Arabidopsis thaliana GN=At1g09380 PE=2 SV=1

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/322 (34%), Positives = 182/322 (56%), Gaps = 16/322 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AMV +Q  YAG+ + +++A+  G+ P + V YRQ  A +   P+ +   RK+  R  + 
Sbjct: 10  LAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKT--RPKIT 67

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR    +F  S+ G T NQ  YF GL  SS T+A A+TNL+PAVTF++A I   E V  +
Sbjct: 68  LRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGIK 127

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKL----------VNEEFIPPKSLIFSSGADNWL 170
                AK++GT+ CV GA+ ++   G  +            E      S   SSG  N+ 
Sbjct: 128 KASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGS---SSGHSNFF 184

Query: 171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT 230
           LG FL+  ++  W+ W I+Q  +S +      S+  MC + S++   +AL+ +  +  W+
Sbjct: 185 LGPFLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWS 244

Query: 231 LNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
           L+S L     LY+G+ A A++F L +W +  +GPL+ ++F+PL  V+V + +   L+E++
Sbjct: 245 LSSPLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKL 304

Query: 290 FMGSLIGAFAVIIGLYVVLWGK 311
           + G+ +G+  V+IGLY VLWGK
Sbjct: 305 YTGTFMGSALVVIGLYGVLWGK 326

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
255574599	380	Auxin-induced protein 5NG4, putative [Ri	0.991	0.965	0.661	1e-136
224091869	348	predicted protein [Populus trichocarpa]	0.902	0.959	0.646	1e-128
255574601	375	Auxin-induced protein 5NG4, putative [Ri	0.972	0.96	0.620	1e-123
224142317	371	predicted protein [Populus trichocarpa]	0.956	0.954	0.585	1e-118
388492196	368	unknown [Lotus japonicus]	0.956	0.961	0.555	1e-109
356503305	367	PREDICTED: auxin-induced protein 5NG4-li	0.970	0.978	0.590	1e-107
357512833	530	Auxin-induced protein 5NG4 [Medicago tru	0.948	0.662	0.557	1e-105
224091873	322	predicted protein [Populus trichocarpa]	0.862	0.990	0.590	1e-104
359806031	367	uncharacterized protein LOC100817369 [Gl	0.932	0.940	0.550	1e-103
15234742	373	nodulin MtN21 /EamA-like transporter fam	0.964	0.957	0.513	1e-101

>gi|255574599|ref|XP_002528210.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532371|gb|EEF34167.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 244/369 (66%), Positives = 300/369 (81%), Gaps = 2/369 (0%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AMV LQF+YAGV+LFTR ALVQG++ RVFVVYRQG A LIMAP+ Y+S R+     SLG
Sbjct: 11  IAMVGLQFIYAGVSLFTRAALVQGMNTRVFVVYRQGIATLIMAPLAYLSVRRKPRMSSLG 70

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           L+ F W+ +ASLIG+TANQNAYFEGL+L+SST  +AMTNL+PA+TFVMA I G EKV+ R
Sbjct: 71  LKFFAWISLASLIGITANQNAYFEGLFLTSSTATTAMTNLIPAITFVMAAIFGMEKVNIR 130

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           +LRSIAKI+GT+ CV GAI+MALLKGPKL+N + +PP S + S G DNWLLGC  LFGSS
Sbjct: 131 NLRSIAKIIGTVICVTGAISMALLKGPKLLNSKLLPPMSTLSSEG-DNWLLGCIFLFGSS 189

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
            FWSFWMILQVPIS S P+H YSSAWM FLA++ESA +AL +EKN  AW LNS+LE+ CC
Sbjct: 190 CFWSFWMILQVPISESCPDHLYSSAWMGFLATIESAIIALSLEKNGAAWKLNSYLEMGCC 249

Query: 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300
           LY+G+ LA+SFFLQAWCIS+RGPLF AMFNPLCTVI  ++A +FL EE ++GSLIGA AV
Sbjct: 250 LYAGVGLAVSFFLQAWCISQRGPLFSAMFNPLCTVITAIIAAIFLHEETYLGSLIGALAV 309

Query: 301 IIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSV-KKSYKNNLEEPLLSDK 359
           IIGLYVVLWGKA+DLEE+   T  KLQND +  VQV++++ S  KK+ + +LEEP +S K
Sbjct: 310 IIGLYVVLWGKAKDLEEVNKGTHLKLQNDGSGIVQVIVDDESFEKKNCRADLEEPFISHK 369

Query: 360 SSIVDANEM 368
           S+ +D N +
Sbjct: 370 SANIDENSV 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091869|ref|XP_002309380.1| predicted protein [Populus trichocarpa] gi|222855356|gb|EEE92903.1| predicted protein [Populus trichocarpa]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/359 (64%), Positives = 277/359 (77%), Gaps = 25/359 (6%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           M MV LQF+YAGVALFTR ALV+GLSP+VFVVYRQG A LIMAP+ Y+S R         
Sbjct: 11  MGMVGLQFIYAGVALFTRAALVRGLSPKVFVVYRQGIATLIMAPLAYVSRR--------- 61

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
                         VTANQNAYFEGLYLSSST ASA+TNLMPA+TFVMA I+G EKV+ R
Sbjct: 62  --------------VTANQNAYFEGLYLSSSTAASALTNLMPAITFVMAAISGLEKVNVR 107

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           SLR+I+KILGT+ CV GAI MALLKGPKL+N E +P KS  FS G+DNWLLGC  LFGSS
Sbjct: 108 SLRTISKILGTVICVSGAIAMALLKGPKLLNTELLPTKSF-FSPGSDNWLLGCLFLFGSS 166

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
            FWS WM+LQVPIS+S P+H YSSAWMCFLASL+S+ +AL  EK+L +W L + LE+A C
Sbjct: 167 CFWSLWMVLQVPISASCPDHLYSSAWMCFLASLQSSMIALFAEKDLTSWKLITHLEIASC 226

Query: 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300
           LY+GI LA+SFF+QAW IS+RGPLF AMFNPLCTVIV + + + L EE + GSLIGA AV
Sbjct: 227 LYAGIGLAVSFFVQAWVISQRGPLFSAMFNPLCTVIVGIFSAVVLHEETYAGSLIGALAV 286

Query: 301 IIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDK 359
           IIGLY VLWGKA+DLEEI+++   + QNDQ+  VQ++I+E   KK+ K +LE PLLS +
Sbjct: 287 IIGLYAVLWGKAKDLEEIKNEMHQQQQNDQS-PVQLLIDESPEKKNCKADLEAPLLSSQ 344

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574601|ref|XP_002528211.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223532372|gb|EEF34168.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/369 (62%), Positives = 283/369 (76%), Gaps = 9/369 (2%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           MA++ LQ + AG+ALF R AL+QGL+   FVVYR   A LI+AP+ Y+STR+ SY+  L 
Sbjct: 13  MALIGLQLMNAGIALFIRAALLQGLNSMAFVVYRHAIATLIIAPLSYVSTRRISYKTPLR 72

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR+F W+F+ASL G+TANQ  YFEGL+L+SSTV SA  NL+PA+TFVMA I G EKV   
Sbjct: 73  LRSFAWIFLASL-GLTANQFLYFEGLHLASSTVGSATNNLIPAITFVMATILGMEKVKVV 131

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSG--ADN-WLLGCFLLF 177
           SLRS+AKI+GTIFCV GAI+MA LKGPKL+N E  PPKS   SSG  +DN WLLGC LLF
Sbjct: 132 SLRSMAKIIGTIFCVSGAISMAFLKGPKLLNTELQPPKS---SSGIESDNYWLLGCLLLF 188

Query: 178 GSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL 237
           GSS F+S WMILQVPIS+S P+H YSSAWM FL ++ESA V LLV K+  AW LNS+LE+
Sbjct: 189 GSSCFYSLWMILQVPISASCPDHLYSSAWMGFLVTIESAAVTLLVTKDSAAWNLNSYLEI 248

Query: 238 ACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGA 297
           + CLY+GI  ++ FF+QAWCIS+RGPLF AMFNPL TVIVT++A +FL EE ++GSLIGA
Sbjct: 249 SSCLYAGIVQSLIFFIQAWCISQRGPLFAAMFNPLSTVIVTIIAAVFLHEETYVGSLIGA 308

Query: 298 FAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLS 357
            AVIIGLY+VLWGKA+D EEI+     +LQND +  +QV  +E   K++   +LE PL+S
Sbjct: 309 LAVIIGLYIVLWGKAKDHEEIKKDMHLELQNDNSSILQVTADESLEKRNCTADLEVPLIS 368

Query: 358 DKSSIVDAN 366
            KS  VD N
Sbjct: 369 HKS--VDIN 375

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142317|ref|XP_002324505.1| predicted protein [Populus trichocarpa] gi|222865939|gb|EEF03070.1| predicted protein [Populus trichocarpa]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/367 (58%), Positives = 284/367 (77%), Gaps = 13/367 (3%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AM+ +QF YA V+L  R AL+QG+SPRVFVVYRQ  A +++AP+ + S RKS    S+G
Sbjct: 11  LAMLGMQFSYAIVSLIIRAALIQGMSPRVFVVYRQAIATVVIAPLAHFS-RKSG-GTSMG 68

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR+F  +F ASLIGVT NQN + EGLYL+SS++ASAM NL+PA+TFVMAF+ G EK++ R
Sbjct: 69  LRSFSLVFSASLIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAFLIGLEKINIR 128

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           S RSIAKI+GT+ CV GAI+MALL+GPKL+N       + IF SG ++WLLGC L+F S+
Sbjct: 129 SFRSIAKIVGTVICVSGAISMALLRGPKLLN-------TTIFESGGEDWLLGCLLIFAST 181

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
           + WS W+ILQVP+++S P+H   SAW+CFLA+L+S  + L +EK+LEAW L+S+LE+  C
Sbjct: 182 FCWSIWLILQVPVTASYPDHLSLSAWLCFLATLQSGILTLFLEKDLEAWKLHSYLEVVGC 241

Query: 241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299
           L++GI    ISFF+QAW IS+RGPLF AMFNPLCTVIVT+LA +FL EEI+ GSLIGA A
Sbjct: 242 LFTGIIGSGISFFVQAWVISQRGPLFSAMFNPLCTVIVTILAAIFLHEEIYTGSLIGAVA 301

Query: 300 VIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDK 359
           VIIGLY+VLWGKA+D  + E K D KL+ D+ +TV++ IEE    +  +  LEEPLLSDK
Sbjct: 302 VIIGLYIVLWGKAKDFTKEEDKVDPKLEIDERQTVKITIEE---SRGVEPVLEEPLLSDK 358

Query: 360 SSIVDAN 366
           S+ ++ +
Sbjct: 359 SNDIEES 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492196|gb|AFK34164.1| unknown [Lotus japonicus]

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/369 (55%), Positives = 267/369 (72%), Gaps = 15/369 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AM+ LQF YA +A+ TR AL+ GLSP +FVVYRQG A L + PI + S R+ S + SL 
Sbjct: 12  IAMIGLQFYYAILAILTRAALLDGLSPPIFVVYRQGIATLALTPIFFSSKRRQSLKSSLR 71

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
            R++  +F  SLIGVTANQN YF+GLY +SST A+AM+NL+PA+TFV+A I G+EKV  R
Sbjct: 72  FRSYSLMFATSLIGVTANQNTYFQGLYYASSTAATAMSNLIPALTFVIAAIFGFEKVDLR 131

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           SLR +AKILGT+ CV GA+TMALLKG KL+N EFIP   L  S G D+WLLGC LL  SS
Sbjct: 132 SLRFMAKILGTVCCVVGALTMALLKGHKLLNTEFIPFIHLTASRG-DDWLLGCSLLLASS 190

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
            FWS W+I+QVPISSS P+H  S+  MCF A+++SA  AL   +N +AW L+S LE++CC
Sbjct: 191 VFWSSWIIMQVPISSSCPDHLLSTFCMCFFATIQSALFALFYGENFQAWMLHSPLEISCC 250

Query: 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300
           LY GI +A+SFF+Q+WCIS RGPL+CAMFNPL TV+   +A  FL EE+++GSL+GA  V
Sbjct: 251 LYGGIGIAVSFFIQSWCISIRGPLYCAMFNPLSTVLTAFIAATFLQEELYIGSLVGAVGV 310

Query: 301 IIGLYVVLWGKAEDLEEIEHKT-DTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSDK 359
           I GLY+VLWGKA++ EEI+ +   + +Q D+  + QV +EEP             LL +K
Sbjct: 311 ITGLYIVLWGKAKEFEEIKQEVLQSNMQGDEISS-QVDLEEPL------------LLPEK 357

Query: 360 SSIVDANEM 368
           S  VD ++M
Sbjct: 358 SEHVDKSKM 366

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503305|ref|XP_003520451.1| PREDICTED: auxin-induced protein 5NG4-like [Glycine max]

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/364 (59%), Positives = 266/364 (73%), Gaps = 5/364 (1%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           MAM+  Q +YAG++L TRVA +QG+SPRVFVVYR   A +++API Y S  ++S    L 
Sbjct: 1   MAMLFNQSIYAGISLSTRVAFLQGMSPRVFVVYRHAFATIVIAPIAYFSGWRNSGSYYLN 60

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           L++F W+F+ SLIG+T NQN +FEGLYL+SS+VASAM NL+PAVTF++A  AG EKV+ R
Sbjct: 61  LKSFSWIFLTSLIGITLNQNLFFEGLYLASSSVASAMANLVPAVTFIIAACAGMEKVNIR 120

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           S RS+AKI+GT+ CV GA++MALLKGPKL+N E +P KS I +SG D+WLLGC  L G  
Sbjct: 121 STRSLAKIIGTVICVSGAVSMALLKGPKLLNAEILPSKS-IMASGGDHWLLGCLFLTGCC 179

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
             WS W+IL VP S+S P+H   SAWMCF+A+L+S  V LL+E +  AW +NS LE  C 
Sbjct: 180 CAWSVWLILMVPASTSHPDHLSFSAWMCFMATLQSTLVTLLLEPDPHAWKINSLLEFGCT 239

Query: 241 LYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299
           LYSG I  A+  F+QAWCIS RGPLFCAMFNPL TVIVT+LA L L EEI+ GSLIG+  
Sbjct: 240 LYSGVIGSAVLLFIQAWCISLRGPLFCAMFNPLFTVIVTILAALLLHEEIYSGSLIGSTG 299

Query: 300 VIIGLYVVLWGKAEDLEEIEHK-TDTKLQNDQTRTVQVVIE-EPSVKKSYK-NNLEEPLL 356
           VIIGLYVV WGKAE + E   K TD K   + T  V+++I    SVK   K NNLEEPLL
Sbjct: 300 VIIGLYVVHWGKAEKVSEANVKLTDPKSMVNSTEDVKILINGSSSVKACCKTNNLEEPLL 359

Query: 357 SDKS 360
           S  S
Sbjct: 360 SADS 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512833|ref|XP_003626705.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355520727|gb|AET01181.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/366 (55%), Positives = 267/366 (72%), Gaps = 15/366 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           M MV +QF+YAG+ L  RV L++G+SP VFVVYR   A + +API Y S R S+   SL 
Sbjct: 13  MVMVLIQFIYAGMNLGIRVTLLEGMSPNVFVVYRSAFATIFLAPIAYFSGRNSA-SYSLN 71

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR+F  +F+ S  GVT  QN YFEGLYLSSS++ASAMTNL+PAVTFV+A +A  EKV+ R
Sbjct: 72  LRSFSLIFMTSGRGVTLTQNLYFEGLYLSSSSIASAMTNLIPAVTFVIAVLARMEKVNIR 131

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVN-EEFIPPKSLI-FSSGADN-WLLGCFLLF 177
           SLR+IAKI+GT+ CV GA+++ALLKGPKL+N E  +P KS++  +SG+D+ WLLGC  L 
Sbjct: 132 SLRTIAKIVGTLICVCGALSIALLKGPKLLNAENILPTKSIMAITSGSDDSWLLGCVYLL 191

Query: 178 GSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL 237
           GSS  WS W+ILQVP  +S PN+   SAWMCF+A+L+SA V L +E +L AW +NS L+ 
Sbjct: 192 GSSVAWSLWLILQVPAYASHPNYLSLSAWMCFMATLQSALVTLFLEPDLNAWKINSLLQF 251

Query: 238 ACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIG 296
            C LY+GI   A  F LQAWCI++RGPLF A+F+PL T++VT+LA L L EEI++GSLIG
Sbjct: 252 GCALYAGIMGSAFVFCLQAWCITKRGPLFSAVFSPLLTILVTILAVLLLHEEIYIGSLIG 311

Query: 297 AFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLL 356
           A  VIIGLYVVLWGKAED+  ++ K D K    QT  V+++I           +L+E LL
Sbjct: 312 AIGVIIGLYVVLWGKAEDVVHVKQKIDPKSMVTQTEEVKILI----------TDLKETLL 361

Query: 357 SDKSSI 362
           +D+S++
Sbjct: 362 ADESTL 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091873|ref|XP_002309381.1| predicted protein [Populus trichocarpa] gi|222855357|gb|EEE92904.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 245/327 (74%), Gaps = 8/327 (2%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +AM  LQF YA V+L TR AL+ G+SPRVFVVYRQ  A L++ P+ Y S RKS+   SLG
Sbjct: 4   LAMFGLQFSYAIVSLITRAALIHGMSPRVFVVYRQAIATLVIVPVSYFSRRKSA-GTSLG 62

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR+F  +F AS IGVT NQN + EGLYL+SS++ASAM NL+PA+TFVMA   G EK+   
Sbjct: 63  LRSFCLVFSASFIGVTINQNVFAEGLYLASSSMASAMGNLVPAITFVMAVALGLEKIKIG 122

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           S RSIAKI+GT+ CV GAI+MALL+GPKL+N+        IF SG ++WLLGC  +F S+
Sbjct: 123 SFRSIAKIVGTVICVSGAISMALLRGPKLLNKT-------IFGSGGEDWLLGCLFIFVST 175

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
             WS W+ILQVP+++S P+H   SAWMCFLA+L+S  + L +EK+L+AW L+S+LEL  C
Sbjct: 176 CCWSIWLILQVPLTASYPDHLSLSAWMCFLATLQSGILTLFLEKDLDAWKLHSYLELVGC 235

Query: 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300
           L++     +SFF+QAW I +RGPLF AMFNPLCTVIVTVLA +FL EEI+ G LIG  AV
Sbjct: 236 LFTVSGSGLSFFVQAWVICQRGPLFSAMFNPLCTVIVTVLAAIFLHEEIYTGGLIGGVAV 295

Query: 301 IIGLYVVLWGKAEDLEEIEHKTDTKLQ 327
           IIGLY+VLWGKA+D  + E + D KL+
Sbjct: 296 IIGLYIVLWGKAKDFIKEEDEIDPKLE 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806031|ref|NP_001241431.1| uncharacterized protein LOC100817369 [Glycine max] gi|255647987|gb|ACU24450.1| unknown [Glycine max]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/363 (55%), Positives = 266/363 (73%), Gaps = 18/363 (4%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           + M+ LQ  YA +A+FTR AL+ GLS  VFVVYRQG A L +API +   R+ S + SLG
Sbjct: 11  IVMIGLQIHYAALAIFTRAALLDGLSTTVFVVYRQGIATLALAPIFFSPKRRQSVKDSLG 70

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
            R+F  +FV +L+GVTANQNAYF+GL+ +SST A+AM+NL+PA+TFV+A IAG+EKV + 
Sbjct: 71  FRSFFLMFVTALVGVTANQNAYFKGLFYASSTAATAMSNLIPALTFVIAAIAGFEKV-DI 129

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
           SLRS AKILGT+ CV GA+TMAL+KG KL++ EF+P   L  S G D+WLLGC LL  SS
Sbjct: 130 SLRSTAKILGTVCCVAGALTMALVKGQKLLHTEFLPSIHLTGSQG-DDWLLGCLLLLASS 188

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
            FWS WMILQVPI+S  P+H  S+ WMC  +++++A  ALL E +L+AW L S L+++C 
Sbjct: 189 VFWSCWMILQVPITSCCPDHLLSTFWMCLFSTIQAALFALLSESDLQAWILQSPLQISCS 248

Query: 241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV 300
           LY+GI +A+SFF+Q+WCISERGPL+CAMFNPL TVI  +++  FL+EE+++GSL+GA  V
Sbjct: 249 LYAGIGIAVSFFIQSWCISERGPLYCAMFNPLATVITALISATFLEEEVYVGSLVGAVGV 308

Query: 301 IIGLYVVLWGKAEDLEEI--EHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLLSD 358
           I GLYVVLWGKA++  EI  E    + L +D+               S + +LE+PLLS+
Sbjct: 309 IAGLYVVLWGKAKEFAEIKPEAPQSSNLLDDEI--------------SSRIDLEQPLLSE 354

Query: 359 KSS 361
           K S
Sbjct: 355 KLS 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234742|ref|NP_194771.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana] gi|7269943|emb|CAB79760.1| nodulin-like protein [Arabidopsis thaliana] gi|332660363|gb|AEE85763.1| nodulin MtN21 /EamA-like transporter family protein [Arabidopsis thaliana]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/366 (51%), Positives = 255/366 (69%), Gaps = 9/366 (2%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLS-L 59
           MAM  +Q  YAGV LF R  LV GLSPRVF++YRQ  A + + P +Y+S RKS   +S L
Sbjct: 1   MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query: 60  GLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHN 119
            L++F  +F+ SLIG+T NQN Y EGLYL+SS++ SA+ N++PA+TF+++F+AG+EK++ 
Sbjct: 61  DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query: 120 RSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP--KSLIFSSGADN-WLLGCFLL 176
           R +R +AKI GTI CV GAI+M LL+GPK++N E   P  KS++      N WL+GC  L
Sbjct: 121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query: 177 FGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLE 236
           F S+  WSFW+ILQVPIS+  P++   SAWMC   +++ A V   +EK+  AW L+S+ E
Sbjct: 181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query: 237 LACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLI 295
            A CLY+GI A A+SF +QAW I++RGP+F A+FNPLCTVIVT+LA LF  EEI+ GSLI
Sbjct: 241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTGSLI 300

Query: 296 GAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPL 355
           G   VI+GLY VLWGKA+D+   + + D    NDQ   V++ IE+ S       +L+ PL
Sbjct: 301 GGLGVILGLYTVLWGKAKDVMMNQDQRD----NDQKSEVKIHIEDSSNTTICNKDLKNPL 356

Query: 356 LSDKSS 361
           LS   S
Sbjct: 357 LSKHKS 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2118686	373	UMAMIT34 "AT4G30420" [Arabidop	0.964	0.957	0.483	6e-87
TAIR|locus:2132982	359	UMAMIT33 "Usually multiple aci	0.935	0.963	0.479	3.4e-84
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.964	0.917	0.334	2.8e-50
UNIPROTKB|Q6J163	410	Q6J163 "Auxin-induced protein	0.962	0.868	0.339	5.8e-50
TAIR|locus:2039792	374	UMAMIT14 "AT2G39510" [Arabidop	0.840	0.831	0.362	2.5e-49
TAIR|locus:2012255	374	UMAMIT25 "Usually multiple aci	0.894	0.885	0.330	1.1e-48
TAIR|locus:2092702	383	UMAMIT4 "AT3G18200" [Arabidops	0.843	0.814	0.348	2.9e-48
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.840	0.773	0.341	2.9e-48
TAIR|locus:2049847	380	UMAMIT12 "Usually multiple aci	0.932	0.907	0.318	2.6e-47
TAIR|locus:2176065	359	UMAMIT21 "AT5G64700" [Arabidop	0.908	0.935	0.324	1e-45

TAIR|locus:2118686 UMAMIT34 "AT4G30420" [Arabidopsis thaliana (taxid:3702)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 177/366 (48%), Positives = 240/366 (65%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLS-L 59
             MAM  +Q  YAGV LF R  LV GLSPRVF++YRQ  A + + P +Y+S RKS   +S L
Sbjct:     1 MAMTMIQLCYAGVTLFARATLVHGLSPRVFILYRQAFATIFIFPFLYLSRRKSKIAISSL 60

Query:    60 GLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHN 119
              L++F  +F+ SLIG+T NQN Y EGLYL+SS++ SA+ N++PA+TF+++F+AG+EK++ 
Sbjct:    61 DLKSFSLIFLVSLIGITINQNLYLEGLYLTSSSMGSAVGNIIPAITFLISFLAGYEKLNL 120

Query:   120 RSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP--KSLIFSSGADN-WLLGCFLL 176
             R +R +AKI GTI CV GAI+M LL+GPK++N E   P  KS++      N WL+GC  L
Sbjct:   121 RDIRGLAKIAGTILCVAGAISMTLLRGPKILNSESALPIAKSVLGHLKDQNTWLIGCLFL 180

Query:   177 XXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWTLNSFLE 236
                       +ILQV             AWMC   +++ A V   +EK+  AW L+S+ E
Sbjct:   181 FSSTLCWSFWLILQVPISAYYPDNLSLSAWMCLFGTIQCAVVTFFLEKDPNAWILHSYSE 240

Query:   237 LACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLI 295
              A CLY+GI A A+SF +QAW I++RGP+F A+FNPLCTVIVT+LA LF  EEI+ GSLI
Sbjct:   241 FATCLYAGIGASALSFTVQAWAIAKRGPVFSALFNPLCTVIVTILAALFFHEEIYTGSLI 300

Query:   296 GAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPL 355
             G   VI+GLY VLWGKA+D+   + + D    NDQ   V++ IE+ S       +L+ PL
Sbjct:   301 GGLGVILGLYTVLWGKAKDVMMNQDQRD----NDQKSEVKIHIEDSSNTTICNKDLKNPL 356

Query:   356 LSDKSS 361
             LS   S
Sbjct:   357 LSKHKS 362

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2132982 UMAMIT33 "Usually multiple acids move in and out Transporters 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 172/359 (47%), Positives = 240/359 (66%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             +A+V LQF  AGVALFT+ A ++GL+P VFVVYRQ  A L + PI +IS  +   + SLG
Sbjct:    10 LALVMLQFTSAGVALFTKAAFMEGLNPTVFVVYRQAIATLFICPISFISAWRKENKPSLG 69

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
             +R F W+ + ++IGVT NQNAYF+G+ LSSS++A AMTNL+PAVTF+++ I G+E +  R
Sbjct:    70 VRGFWWVALTAVIGVTVNQNAYFKGIDLSSSSMACAMTNLIPAVTFIISIIVGFESIKRR 129

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLXXXX 180
             S++S+AK++GT  CVGGA+ M  L+GPKL+N         + +     WLLGCF L    
Sbjct:   130 SMKSVAKVIGTGVCVGGAMAMTFLRGPKLLNA--------LLNQDNTAWLLGCFFLLIST 181

Query:   181 XXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVAL-LVEKNLEAWTLNSFLELAC 239
                   +ILQV             A  CF+A++ S  VAL L   +L  W L+SFL+L+C
Sbjct:   182 FAWSLWLILQVPIASHCPDHLYTSACTCFIATIASFLVALALGNTHLPPWKLDSFLKLSC 241

Query:   240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299
             C+YSG  LAISFFLQAW +S++GP+F A+FNPL  VIVT    L+L E+ ++GSL+GA A
Sbjct:   242 CIYSGFQLAISFFLQAWIVSQKGPVFSALFNPLSAVIVTFFGALYLKEQTYLGSLLGALA 301

Query:   300 VIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSV-KKSYKNN-LEEPLL 356
             +I+GLY+VLWGK+ED +E    TD KL+N+   + Q  I    +  K+++++ L EPLL
Sbjct:   302 IILGLYIVLWGKSEDYQE--ESTDLKLENEHNTSSQSDIVSIMIGDKAFRSSELLEPLL 358

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
 Identities = 125/374 (33%), Positives = 193/374 (51%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             +AM+ LQF YAG  + +R AL  G+S  VF VYR   A L++ P  Y   +K    ++L 
Sbjct:    22 IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPAITLN 81

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
                  + F+A LIG+TANQ  Y  GL  +S T AS+M N +PA+TF+MA +   EKV   
Sbjct:    82 F-LIQFFFLA-LIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRIN 139

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKL------VNEEFIPPKSLIFS----SGADNWL 170
                 I+KILGT  CV GA  + L KGP +      ++   +   S + +    +   NW 
Sbjct:   140 RRDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWT 199

Query:   171 LGCFLLXXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWT 230
             LGC  L          ++ Q              ++ CF   ++   +A   E++ +AW 
Sbjct:   200 LGCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWV 259

Query:   231 LNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
              +S  EL   LY+GI A  I+F +Q WCI   GP+F A++ P+ T++V ++A + L EE 
Sbjct:   260 FHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMASIALGEEF 319

Query:   290 FMGSLIGAFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKN 349
             ++G +IGA  +I GLY VL+GK+E+  +        +Q+     ++     P  + S K+
Sbjct:   320 YLGGIIGAVLIIAGLYFVLYGKSEE-RKFAALEKAAIQSSAEHGIE---RAPVSRNSIKS 375

Query:   350 NLEEPLLSDKSSIV 363
             ++  PLL   +  V
Sbjct:   376 SITTPLLHQSTDNV 389

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

UNIPROTKB|Q6J163 Q6J163 "Auxin-induced protein 5NG4" [Pinus taeda (taxid:3352)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 128/377 (33%), Positives = 196/377 (51%)

Query:     2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGL 61
             AM+ALQF YAG  + +R AL  G+S  VF VYR   A +++ P  Y   +K   R +L L
Sbjct:    22 AMLALQFGYAGFHIVSRAALNMGVSKVVFPVYRNILALMLIGPCAYFLEKKE--RPALTL 79

Query:    62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRS 121
                   F+ +L G+T         + L   T ASA+ N +PA+TF+MA     EKVH   
Sbjct:    80 SFLIQFFLLALCGITGQSRILSLRIVLHIPTFASAIQNSVPAITFIMAAALRLEKVHISR 139

Query:   122 LRSIAKILGTIFCVGGAITMALLKGPKLV-----NEEFIPPKSLIF-----SSGADNWLL 171
                +AKI+GT+ CV GA  + L KGP +      N E        F     S+ ++NW L
Sbjct:   140 RDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTL 199

Query:   172 GCFLLXXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWTL 231
             GC  L          ++LQ              ++ CF   ++   +A   E +LE W +
Sbjct:   200 GCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKI 259

Query:   232 NSFLELACCLYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIF 290
             +S  EL   LY+G +A  I+F +Q WCI   GP+F A++ P+ T+ V ++A + L E+ +
Sbjct:   260 HSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFY 319

Query:   291 MGSLIGAFAVIIGLYVVLWGKAED--LEEIEHKTDTKLQN-----DQTRTVQVVIEEPSV 343
             +G + GA  +IIGLY+VLWGK+E+  L  ++ K+    +N     DQ+ T+ ++     +
Sbjct:   320 LGGIFGAILIIIGLYLVLWGKSEEKRLGLLQAKSSMVPENQPDNMDQSATL-IINSSNGI 378

Query:   344 KKSYKNNLEEPLLSDKS 360
             K +  ++L +PLL D S
Sbjct:   379 KPNTSSSLTQPLLLDTS 395

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=NAS

GO:0005938 "cell cortex" evidence=IDA

GO:0006810 "transport" evidence=NAS

GO:0009734 "auxin mediated signaling pathway" evidence=IDA

TAIR|locus:2039792 UMAMIT14 "AT2G39510" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 116/320 (36%), Positives = 181/320 (56%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             + +V+LQF YAG+++  + AL QG+SP V   YR   A + +AP  Y   RK   +++L 
Sbjct:    10 ITVVSLQFGYAGLSIIAKFALNQGMSPHVLASYRHIVATIFIAPFAYFLDRKIRPKMTLS 69

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
             +  F  + +  L+  T +QN Y+ G+  +S+T  +AMTN++PA  F+MA+I   EKV+ +
Sbjct:    70 I--FFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFAFIMAWIFRLEKVNVK 127

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSS---GADNWLL-GCFLL 176
              + S AKILGTI  VGGA+ M ++KGP L+   +  P  +   S   G    L  G  L+
Sbjct:   128 KIHSQAKILGTIVTVGGAMLMTVVKGP-LIPLPWANPHDIHQDSSNTGVKQDLTKGASLI 186

Query:   177 XXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEK-NLEAWTLNSFL 235
                       + LQ              A++CFL S+ES  VAL +E+ N  AW ++   
Sbjct:   187 AIGCICWAGFINLQAITLKSYPVELSLTAYICFLGSIESTIVALFIERGNPSAWAIHLDS 246

Query:   236 ELACCLYSGIALA-ISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL 294
             +L   +Y G+  + I +++Q   +  RGP+F   FNPL  VIV +L  + L E +F+G +
Sbjct:   247 KLLAAVYGGVICSGIGYYVQGVIMKTRGPVFVTAFNPLSMVIVAILGSIILAEVMFLGRI 306

Query:   295 IGAFAVIIGLYVVLWGKAED 314
             +GA  +++GLY VLWGK++D
Sbjct:   307 LGAIVIVLGLYSVLWGKSKD 326

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2012255 UMAMIT25 "Usually multiple acids move in and out Transporters 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 113/342 (33%), Positives = 188/342 (54%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             +AMV +Q  YAG+ + +++A+  G+ P + V YRQ  A +   P+ +   RK+  R  + 
Sbjct:    10 LAMVLVQIGYAGMNITSKMAMEAGMKPLILVAYRQIFATIATFPVAFFLERKT--RPKIT 67

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
             LR    +F  S+ G T NQ  YF GL  SS T+A A+TNL+PAVTF++A I   E V  +
Sbjct:    68 LRILVQVFFCSITGATGNQVLYFVGLQNSSPTIACALTNLLPAVTFLLAAIFRQETVGIK 127

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKL-VNEEFIP---PKSLI---FSSGADNWLLGC 173
                  AK++GT+ CV GA+ ++   G  + + E  I     +++     SSG  N+ LG 
Sbjct:   128 KASGQAKVIGTLVCVIGAMVLSFYHGHTIGIGESKIHWAYAENITKHGSSSGHSNFFLGP 187

Query:   174 FLLXXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWTLNS 233
             FL+           I+Q                MC + S++   +AL+ +  +  W+L+S
Sbjct:   188 FLIMAAAVSWAAWFIIQTKMSETFAAPYTSTLLMCLMGSIQCGAIALISDHTISDWSLSS 247

Query:   234 FLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMG 292
              L     LY+G+ A A++F L +W +  +GPL+ ++F+PL  V+V + +   L+E+++ G
Sbjct:   248 PLRFISALYAGVVASALAFCLMSWAMQRKGPLYVSVFSPLLLVVVAIFSWALLEEKLYTG 307

Query:   293 SLIGAFAVIIGLYVVLWGKAEDLEEIEHKTD-TKLQNDQTRT 333
             + +G+  V+IGLY VLWGK  ++ E E + +  K QN + ++
Sbjct:   308 TFMGSALVVIGLYGVLWGKDREVSEKEEEREKVKQQNHKVKS 349

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2092702 UMAMIT4 "AT3G18200" [Arabidopsis thaliana (taxid:3702)]

 Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
 Identities = 110/316 (34%), Positives = 175/316 (55%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             +A++ LQF +AG  + +RVAL  G+S  V+ VYR   A L++ P  Y   +K    L++ 
Sbjct:    37 VALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPPLTIS 96

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
             L      F  +LIG+TANQ  Y  GLY ++ T ASAM N +PA+TF+MA     E +   
Sbjct:    97 L--LAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLV 154

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF-IPPKSLIFSSGADNWLLGCFLLXXX 179
                 +AK+LGT+  +GGA  + L +G  + ++   +  + ++ S  + +  LG   L   
Sbjct:   155 RKHGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKEEVVGSDNSHSLTLGWLYLMGH 214

Query:   180 XXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWTLNSFLELAC 239
                    M+LQ              ++ CF   ++   +AL VE +L  W + S+ EL  
Sbjct:   215 CLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEELFT 274

Query:   240 CLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAF 298
              LY+GI A  +  +LQ WCI + GP+F A+F PL T++V  +A L L ++++ G ++GA 
Sbjct:   275 ILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVAAMAFLILGDQLYSGGIVGAV 334

Query:   299 AVIIGLYVVLWGKAED 314
              +++GLY+VLWGK E+
Sbjct:   335 FIMLGLYLVLWGKNEE 350

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
 Identities = 111/325 (34%), Positives = 178/325 (54%)

Query:     2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGL 61
             AM++LQF YAG+ + T+++L  G+S  V VVYR   A  ++AP  +   RK+  +++  +
Sbjct:    21 AMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFERKAQPKITFSI 80

Query:    62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRS 121
               F  LF+  L+G   +QN Y+ GL  +S T + AM+N++PA+TF++A +   E +  + 
Sbjct:    81 --FMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFRMEMLDLKK 138

Query:   122 LRSIAKILGTIFCVGGAITMALLKGP--KLVNEEF--IPPKSLIFSSGADN------WLL 171
             L   AKI GT+  V GA+ M + KGP  +L   ++  I   S   ++ + N      +L 
Sbjct:   139 LWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNSSSDKEFLK 198

Query:   172 GCFLLXXXXXXXXXXMILQVXXXXXXXXXXXXXAWM-CFLASLESATVALLVEKNLEAWT 230
             G  LL           +LQ                + CF+ +L++  V  ++E N  AW 
Sbjct:   199 GSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVMEHNPSAWR 258

Query:   231 LNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
             +   + L    YSGI A +IS+++Q   + +RGP+F   F+PL  VIV V+    L E+I
Sbjct:   259 IGWDMNLLAAAYSGIVASSISYYVQGIVMKKRGPVFATAFSPLMMVIVAVMGSFVLAEKI 318

Query:   290 FMGSLIGAFAVIIGLYVVLWGKAED 314
             F+G +IGA  ++IGLY VLWGK ++
Sbjct:   319 FLGGVIGAVLIVIGLYAVLWGKQKE 343

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2049847 UMAMIT12 "Usually multiple acids move in and out Transporters 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 115/361 (31%), Positives = 201/361 (55%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             ++MV LQ   AG+ + ++  L +G+S  V VVYR   A ++MAP  +   +K   R  + 
Sbjct:    17 ISMVVLQVGLAGMDILSKAVLNKGMSNYVLVVYRHAVATIVMAPFAFYFDKK--VRPKMT 74

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
             L  F  + +  L+    +QN Y+ G+  +++T A+AM N++PA+TFV+A+I G E+V  R
Sbjct:    75 LMIFFKISLLGLLEPVIDQNLYYLGMKYTTATFATAMYNVLPAITFVLAYIFGLERVKLR 134

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD--NWLLGCFLLXX 178
              +RS  K++GT+  VGGA+ M L+KGP L +  +    S   ++G D  + + G  L+  
Sbjct:   135 CIRSTGKVVGTLATVGGAMIMTLVKGPVL-DLFWTKGVSAHNTAGTDIHSAIKGAVLVTI 193

Query:   179 XXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEK-NLEAWTLNSFLEL 237
                     MILQ              AW+C + ++E   VAL++EK N  AW +    +L
Sbjct:   194 GCFSYACFMILQAITLRTYPAELSLTAWICLMGTIEGTAVALVMEKGNPSAWAIGWDTKL 253

Query:   238 ACCLYSGIAL-AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIG 296
                 YSGI   A+++++    +  RGP+F   F+PLC +IV +++ +   E++++G ++G
Sbjct:   254 LTATYSGIVCSALAYYVGGVVMKTRGPVFVTAFSPLCMIIVAIMSTIIFAEQMYLGRVLG 313

Query:   297 AFAVIIGLYVVLWGKAEDLEEIEHKTDTKLQNDQTRTVQVVIEEPSVKKSYKNNLEEPLL 356
             A  +  GLY+V+WGK +D     +K ++ LQ D   + Q  +E   +  + K+N++  ++
Sbjct:   314 AVVICAGLYLVIWGKGKD-----YKYNSTLQLDD-ESAQPKLE---LSGNGKDNVDHEVI 364

Query:   357 S 357
             +
Sbjct:   365 T 365

GO:0005737 "cytoplasm" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2176065 UMAMIT21 "AT5G64700" [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 114/351 (32%), Positives = 190/351 (54%)

Query:     1 MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
             + +  +Q +Y  + L ++     G++  VFV YRQ  A + +AP+ +   RKS+  LS  
Sbjct:    10 LMVTIIQVIYTIMFLISKAVFNGGMNTFVFVFYRQAFATIFLAPLAFFFERKSAPPLSFV 69

Query:    61 LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
               TF  +F+ SL GVT + +     L  +S+T+A+A T  +PA+TF +A + G E++  +
Sbjct:    70 --TFIKIFMLSLFGVTLSLDLNGIALSYTSATLAAATTASLPAITFFLALLFGMERLKVK 127

Query:   121 SLRSIAKILGTIFCVGGAITMALLKGPKL---VNEEFI-----PPKSLI--FSSGADNWL 170
             S++  AK++G   C+GG I +A+ KGP L   +   F      P ++     S G+ +WL
Sbjct:   128 SIQGTAKLVGITVCMGGVIILAIYKGPLLKLPLCPHFYHGQEHPHRNNPGHVSGGSTSWL 187

Query:   171 LGCFLLXXXXXXXXXXMILQVXXXXXXXXXXXXXAWMCFLASLESATVALLVEKNLEAWT 230
              GC L+          ++LQ                 C L+S++S  +A+ +E+++ AW 
Sbjct:   188 KGCVLMITSNILWGLWLVLQGRVLKVYPSKLYFTTLHCLLSSIQSFVIAIALERDISAWK 247

Query:   231 LNSFLELACCLYSG-IALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
             L   L L   +Y G I   ++++LQ+W I +RGP+F +MF PL  +   + + + L E I
Sbjct:   248 LGWNLRLVAVIYCGFIVTGVAYYLQSWVIEKRGPVFLSMFTPLSLLFTLLSSAILLCEII 307

Query:   290 FMGSLIGAFAVIIGLYVVLWGKA-EDLEEIEHKTDTKLQNDQT-RTVQVVI 338
              +GS++G   +IIGLY VLWGK+ E+    + K D + +ND     V+VVI
Sbjct:   308 SLGSIVGGLLLIIGLYCVLWGKSREEKNSGDDKIDLQKENDVVCNEVKVVI 358

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0B8	WTR37_ARATH	No assigned EC number	0.5136	0.9648	0.9571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00061347 hypothetical protein (348 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	1e-39
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	7e-07
pfam00892	126	pfam00892, EamA, EamA-like transporter family	0.001

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  143 bits (363), Expect = 1e-39
 Identities = 99/325 (30%), Positives = 171/325 (52%), Gaps = 20/325 (6%)

Query: 2   AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSY-RLSLG 60
           AM+A +    G++   +VA  +GL+   F+ Y    A+L++ P ++ + R  S   LS+ 
Sbjct: 17  AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS 76

Query: 61  -LRTFGWL-FVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVH 118
            L   G L F+ S+  +T      + G+  S+ T+ASA++N+ PA+TF++A I   EKV 
Sbjct: 77  ILSKIGLLGFLGSMYVITG-----YIGIEYSNPTLASAISNITPALTFILAIIFRMEKVS 131

Query: 119 NRSLRSIAKILGTIFCVGGAITMALLKGPKL--------VNEEFIPPKSLIFSSGADNWL 170
            +   S+AK++GTI  + GA+ +    GP++        +N   + P     SS   +WL
Sbjct: 132 FKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPP---LSSSNSDWL 188

Query: 171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEA-W 229
           +G  LL     F S   ILQ  I S  P     S       S+ ++ + L+VEKN  + W
Sbjct: 189 IGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW 248

Query: 230 TLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEI 289
            ++  + L   +   I  ++ + + +W +  +GPL+ A+F PL  +I  V+  +FL++ +
Sbjct: 249 IIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSL 308

Query: 290 FMGSLIGAFAVIIGLYVVLWGKAED 314
           ++G LIG   + +G Y V+WGKA +
Sbjct: 309 YLGCLIGGILITLGFYAVMWGKANE 333

Length = 358

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 33/313 (10%)

Query: 1   MAMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG 60
           +A++    L+    +  ++A+            R   AAL++ P++          L   
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLL----LLEPRGLRPA 65

Query: 61  LRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNR 120
           LR +  L + +L+G+       F  L  +S++VAS +  L+P  T ++A +    +  + 
Sbjct: 66  LRPWLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSL 125

Query: 121 SLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSS 180
                 +ILG +  + G + + L  G                  G    LLG  L   ++
Sbjct: 126 -----LQILGILLALAGVLLILLGGG-----------------GGGILSLLGLLLALAAA 163

Query: 181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC 240
             W+ +  L   +S            +  L  L  A + LL+                  
Sbjct: 164 LLWALYTALVKRLS------RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLL 217

Query: 241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA 299
           LY G+ +  +++ L  + +   G    A+ + L  V   +L  L L E +    L+GA  
Sbjct: 218 LYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAAL 277

Query: 300 VIIGLYVVLWGKA 312
           V++G+ +      
Sbjct: 278 VVLGVLLASLRAR 290

Length = 292

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 29/132 (21%), Positives = 62/132 (46%), Gaps = 10/132 (7%)

Query: 8   FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWL 67
             +A   +F++  L++ +SP  F  YR   A +++  ++++  +  +    L L+    L
Sbjct: 1   LSWALYFVFSKK-LLERISPLTFTAYRFLIAGILLILLLFLLRKPFA---LLSLKAILAL 56

Query: 68  FVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAK 127
               L G       YF  L   S++ AS +T+L P  T +++ +   EK+      ++ +
Sbjct: 57  LYLGLFGTALGYLLYFYALKYVSASNASVITSLSPVFTLILSVLLLGEKL------TLKQ 110

Query: 128 ILGTIFCVGGAI 139
           +LG +  + G +
Sbjct: 111 LLGIVLILLGVL 122

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PLN00411	358	nodulin MtN21 family protein; Provisional	100.0
PRK11272	292	putative DMT superfamily transporter inner membran	100.0
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	100.0
PRK11689	295	aromatic amino acid exporter; Provisional	100.0
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	100.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	100.0
PRK15430	296	putative chloramphenical resistance permease RarD;	99.98
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.97
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.97
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.96
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.96
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.95
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.93
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.92
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.91
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.89
COG2962	293	RarD Predicted permeases [General function predict	99.86
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	99.84
KOG2765	416	consensus Predicted membrane protein [Function unk	99.84
KOG2766	336	consensus Predicted membrane protein [Function unk	99.76
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	99.73
KOG1580	337	consensus UDP-galactose transporter related protei	99.63
COG2510	140	Predicted membrane protein [Function unknown]	99.59
KOG1443	349	consensus Predicted integral membrane protein [Fun	99.56
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.53
KOG1581	327	consensus UDP-galactose transporter related protei	99.53
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.5
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	99.5
COG2510	140	Predicted membrane protein [Function unknown]	99.5
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.44
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	99.39
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	99.31
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.25
KOG3912	372	consensus Predicted integral membrane protein [Gen	99.23
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.21
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	99.18
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.16
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.13
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	99.07
PRK15430	296	putative chloramphenical resistance permease RarD;	99.05
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.01
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.98
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	98.95
KOG1582	367	consensus UDP-galactose transporter related protei	98.95
PRK11272	292	putative DMT superfamily transporter inner membran	98.9
PLN00411	358	nodulin MtN21 family protein; Provisional	98.87
PRK13499	345	rhamnose-proton symporter; Provisional	98.85
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.84
PRK11689	295	aromatic amino acid exporter; Provisional	98.8
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.73
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.72
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	98.71
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.67
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	98.67
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.61
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.56
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.53
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.46
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.4
COG2962	293	RarD Predicted permeases [General function predict	98.38
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.32
KOG2922	335	consensus Uncharacterized conserved protein [Funct	98.29
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.24
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	98.15
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.03
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.03
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.91
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.88
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.86
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.74
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.65
KOG4510	346	consensus Permease of the drug/metabolite transpor	97.56
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.55
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.48
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	97.46
COG2076	106	EmrE Membrane transporters of cations and cationic	97.42
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.41
PRK13499	345	rhamnose-proton symporter; Provisional	97.4
PRK11431	105	multidrug efflux system protein; Provisional	97.34
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	97.28
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	97.26
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	97.2
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.14
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.07
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.05
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	97.02
COG2076	106	EmrE Membrane transporters of cations and cationic	96.93
PRK11431	105	multidrug efflux system protein; Provisional	96.88
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	96.78
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.76
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.43
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.24
KOG2765	416	consensus Predicted membrane protein [Function unk	96.24
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.14
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	96.09
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	95.91
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.65
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	94.39
KOG2922	335	consensus Uncharacterized conserved protein [Funct	94.11
PF07168	336	Ureide_permease: Ureide permease; InterPro: IPR009	93.96
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	93.68
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	93.59
KOG1580	337	consensus UDP-galactose transporter related protei	92.87
KOG1581	327	consensus UDP-galactose transporter related protei	92.57
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.09
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	91.45
KOG1443	349	consensus Predicted integral membrane protein [Fun	89.35
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	89.32
KOG4831	125	consensus Unnamed protein [Function unknown]	89.28
PRK02237	109	hypothetical protein; Provisional	87.05
KOG3912	372	consensus Predicted integral membrane protein [Gen	83.68
PF02694	107	UPF0060: Uncharacterised BCR, YnfA/UPF0060 family;	80.67
PRK06638	198	NADH:ubiquinone oxidoreductase subunit J; Provisio	80.16

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=100.00  E-value=2.4e-41  Score=319.69  Aligned_cols=304  Identities=29%  Similarity=0.519  Sum_probs=246.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQN   80 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (370)
                      +|++.+++++++.++.|.+++.|++|..+.++|+.+++++++|++++++|+++ ++  .++|++.++.+.|+++ ++++.
T Consensus        17 ~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~--~~~~~~~~l~l~g~~g-~~~~~   93 (358)
T PLN00411         17 AMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPP--LSVSILSKIGLLGFLG-SMYVI   93 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCc--chHHHHHHHHHHHHHH-HHHHH
Confidence            68999999999999999999999999999999999999999999877654322 32  2345688999999998 78888


Q ss_pred             HHHhhccccchhHHHHhhhhHHHHHHHHHHHh------cccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523           81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIA------GWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF  154 (370)
Q Consensus        81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~------~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  154 (370)
                      +++.|++|++++.++++.++.|++++++++++      ++||++++      |++|++++++|++++...+++.....++
T Consensus        94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~~~~~~~  167 (358)
T PLN00411         94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPRVFVASS  167 (358)
T ss_pred             HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcccccccc
Confidence            99999999999999999999999999999999      47777777      9999999999999987655532110000


Q ss_pred             CC-----CCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC-Cccc
Q 017523          155 IP-----PKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEK-NLEA  228 (370)
Q Consensus       155 ~~-----~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~  228 (370)
                      ..     .+......+..++..|++++++++++||+|++++|+..+++|+....+++++.++++.+.+.....++ +...
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~  247 (358)
T PLN00411        168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV  247 (358)
T ss_pred             cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence            00     00000011223457799999999999999999999999999766677888888888888777776543 2333


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523          229 WTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       229 ~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~  308 (370)
                      |.......+..++|.++++.++|.+|++++++.||++++++.+++|+++++++++++||++++.+++|+++|+.|+++..
T Consensus       248 ~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~  327 (358)
T PLN00411        248 WIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM  327 (358)
T ss_pred             ceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            43333334556788888556899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccchh
Q 017523          309 WGKAED  314 (370)
Q Consensus       309 ~~~~~~  314 (370)
                      +.|++|
T Consensus       328 ~~~~~~  333 (358)
T PLN00411        328 WGKANE  333 (358)
T ss_pred             hhhhhh
Confidence            876655

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=100.00  E-value=1.2e-33  Score=262.55  Aligned_cols=275  Identities=14%  Similarity=0.144  Sum_probs=229.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      ++++..++||.+++++|.+.++ +||..++++|+.+++++++++...++++ .+    ++|++......|.+....++.+
T Consensus        12 ~~~~~~~iWg~~~~~~K~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~-~~----~~~~~~~~~~~g~~~~~~~~~~   85 (292)
T PRK11272         12 ALFALYIIWGSTYLVIRIGVES-WPPLMMAGVRFLIAGILLLAFLLLRGHP-LP----TLRQWLNAALIGLLLLAVGNGM   85 (292)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----cHHHHHHHHHHHHHHHHHHHHH
Confidence            4677889999999999999875 9999999999999999998886553322 11    2356778888898876788889


Q ss_pred             HHhhc-cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523           82 YFEGL-YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL  160 (370)
Q Consensus        82 ~~~al-~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++.+. ++++++.++++.++.|+++.+++++ +|||++++      +++|.+++++|+.++...  .             
T Consensus        86 ~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~~--~-------------  143 (292)
T PRK11272         86 VTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNSG--G-------------  143 (292)
T ss_pred             HHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhcC--c-------------
Confidence            99999 9999999999999999999999986 69999999      999999999999887421  1             


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523          161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC  240 (370)
Q Consensus       161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                          ..+....|++++++++++||.|.+..|+..++  ++...+.+++.++++.+.++....+.+.  ...++...|..+
T Consensus       144 ----~~~~~~~G~l~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i  215 (292)
T PRK11272        144 ----NLSGNPWGAILILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERL--TALPTLSGFLAL  215 (292)
T ss_pred             ----ccccchHHHHHHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcc--cccCCHHHHHHH
Confidence                11234579999999999999999999997654  3455667888888887777665433221  111234568888


Q ss_pred             HHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       241 l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      ++.++ ++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|+.|+++..++++
T Consensus       216 ~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~  288 (292)
T PRK11272        216 GYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999 9999999999999999999999999999999999999999999999999999999999999877544

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=100.00  E-value=4.4e-33  Score=259.62  Aligned_cols=276  Identities=16%  Similarity=0.206  Sum_probs=217.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      .++++.++||.+++++|.+.++ +||.+++++|+.++++.++++.   .+++.+        +......|++....++.+
T Consensus         8 ~~l~~~~~Wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~~~l~~~~---~~~~~~--------~~~~~~~g~~~~~~~~~~   75 (299)
T PRK11453          8 LALLVVVVWGLNFVVIKVGLHN-MPPLMLAGLRFMLVAFPAIFFV---ARPKVP--------LNLLLGYGLTISFGQFAF   75 (299)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHh---cCCCCc--------hHHHHHHHHHHHHHHHHH
Confidence            4678899999999999999977 9999999999999887665543   111111        223445566554566678


Q ss_pred             HHhhccc-cchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523           82 YFEGLYL-SSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL  160 (370)
Q Consensus        82 ~~~al~~-~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++.+++| .+++.++++.++.|+++.+++++++|||++++      +++|++++++|++++... ..             
T Consensus        76 ~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~~-~~-------------  135 (299)
T PRK11453         76 LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIED-SL-------------  135 (299)
T ss_pred             HHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhccc-cC-------------
Confidence            8889998 58899999999999999999999999999999      999999999999888521 11             


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc--hhHHHHHHHHHHHHHHHHHHHHhcCCc---ccccccchh
Q 017523          161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPN--HSYSSAWMCFLASLESATVALLVEKNL---EAWTLNSFL  235 (370)
Q Consensus       161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~  235 (370)
                         +..+....|++++++++++||.|.+++|+..++.++  ......+.+..+.+.........+++.   ..+...+..
T Consensus       136 ---~~~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (299)
T PRK11453        136 ---NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMT  212 (299)
T ss_pred             ---CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHH
Confidence               112234579999999999999999999998765532  234455666665554444444333321   112233446


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          236 ELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       236 ~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      .|..++|.++ +++++|.+|.+++++.++.+++.+.+++|+++.+++++++||+++..+++|+++|++|+++..+.++
T Consensus       213 ~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~  290 (299)
T PRK11453        213 TILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR  290 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence            7889999999 9999999999999999999999999999999999999999999999999999999999999887654

>PRK11689 aromatic amino acid exporter; Provisional

Probab=100.00  E-value=1.2e-32  Score=256.15  Aligned_cols=279  Identities=14%  Similarity=0.074  Sum_probs=211.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      .++++.++||.+++..|.+.++ +||..+.++|+.+++++++++.   ++   ++.+   |+.++..+.+.++.+.+..+
T Consensus         8 ~~l~a~~~Wg~~~~~~k~~~~~-~~P~~~~~~R~~~a~l~l~~~~---~~---~~~~---~~~~~~~~~~~l~~~~~~~~   77 (295)
T PRK11689          8 IGLIAILLWSTMVGLIRGVSES-LGPVGGAAMIYSVSGLLLLLTV---GF---PRLR---QFPKRYLLAGGLLFVSYEIC   77 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-CChHHHHHHHHHHHHHHHHHHc---cc---cccc---cccHHHHHHHhHHHHHHHHH
Confidence            4678889999999999999877 9999999999999999888753   11   1111   11223344455555788888


Q ss_pred             HHhhccc----cchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCC
Q 017523           82 YFEGLYL----SSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP  157 (370)
Q Consensus        82 ~~~al~~----~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~  157 (370)
                      ++.+++|    ++++.++++.++.|+++.+++++++|||++++      +++|++++++|++++...+ .....      
T Consensus        78 ~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~~-~~~~~------  144 (295)
T PRK11689         78 LALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGGD-NGLSL------  144 (295)
T ss_pred             HHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecCC-ccchh------
Confidence            8888765    57788899999999999999999999999999      9999999999998885321 10000      


Q ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHH
Q 017523          158 KSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL  237 (370)
Q Consensus       158 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (370)
                        .+...+......|++++++|+++||.|+++.||..++. ++.....   ..+.+.+.+..... ++..  ...+...|
T Consensus       145 --~~~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~~---~~~~~~l~~~~~~~-~~~~--~~~~~~~~  215 (295)
T PRK11689        145 --AELINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLFF---ILTALALWIKYFLS-PQPA--MVFSLPAI  215 (295)
T ss_pred             --hhhhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHHH---HHHHHHHHHHHHHh-cCcc--ccCCHHHH
Confidence              00000111235699999999999999999999988776 4655422   22333333333322 2211  12233567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          238 ACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       238 ~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      ..+++.+++++++|.+|++++|+.++++++.+.+++|+++++++++++||+++..+++|+++|+.|+++..+.++
T Consensus       216 ~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~  290 (295)
T PRK11689        216 IKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR  290 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence            777787788899999999999999999999999999999999999999999999999999999999999876543

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=100.00  E-value=3.4e-31  Score=242.13  Aligned_cols=257  Identities=18%  Similarity=0.211  Sum_probs=218.5

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcccc
Q 017523           10 YAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLS   89 (370)
Q Consensus        10 ~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~   89 (370)
                      ||.+++..|.+++++.|+....+.|.+.+.+++.++...+    .     +.+++.+....|.++..+++.+++.|++|+
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~----~-----~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~   71 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR----P-----PLKRLLRLLLLGALQIGVFYVLYFVAVKRL   71 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc----c-----CHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999998779999999999999988887764332    1     124577888888888899999999999999


Q ss_pred             chhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCch
Q 017523           90 SSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNW  169 (370)
Q Consensus        90 ~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (370)
                      +++.++++.++.|+++.+++.+++|||++++      +++|++++++|++++... +                  ..+.+
T Consensus        72 ~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~~-~------------------~~~~~  126 (260)
T TIGR00950        72 PVGEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLSD-G------------------NLSIN  126 (260)
T ss_pred             ChhhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhccC-C------------------ccccc
Confidence            9999999999999999999999999999999      999999999999887521 1                  12345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HH
Q 017523          170 LLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-AL  247 (370)
Q Consensus       170 ~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~  247 (370)
                      ..|+.++++++++|+.+.+..|+..++.+ ++.....+.+.++.+.+.+.....+++.    ..+...|..+++.++ ++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  202 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP----QALSLQWGALLYLGLIGT  202 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHHHHHH
Confidence            78999999999999999999999887763 2345555778888888777766543321    123456777888888 89


Q ss_pred             HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhh
Q 017523          248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGL  304 (370)
Q Consensus       248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~  304 (370)
                      +++|.+|++++++.++.+++.+.+++|+++++++++++||+++..+++|.++++.|+
T Consensus       203 ~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~  259 (260)
T TIGR00950       203 ALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999886

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=100.00  E-value=6.4e-31  Score=244.33  Aligned_cols=269  Identities=13%  Similarity=0.091  Sum_probs=214.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      .++++.++|+.++.+.|.+.++ +||..++++|+++++++++++... +++   +  .++|++...+..|++. ...+.+
T Consensus        16 ~~~la~~~~~~~~~~~K~~~~~-~~~~~~~~~R~~~a~l~l~~~~~~-~~~---~--~~~~~~~~~~~~g~~~-~~~~~~   87 (293)
T PRK10532         16 LLLIAMASIQSGASLAKSLFPL-VGAPGVTALRLALGTLILIAIFKP-WRL---R--FAKEQRLPLLFYGVSL-GGMNYL   87 (293)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHhH-Hhc---c--CCHHHHHHHHHHHHHH-HHHHHH
Confidence            4788999999999999999988 999999999999999988876422 111   1  1235677788888875 778889


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI  161 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  161 (370)
                      +++++++++++.++++.++.|+++.+++.    |++.        +..++.++++|+.++... +.              
T Consensus        88 ~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--------~~~~~~i~~~Gv~li~~~-~~--------------  140 (293)
T PRK10532         88 FYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--------DFVWVVLAVLGLWFLLPL-GQ--------------  140 (293)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--------HHHHHHHHHHHHheeeec-CC--------------
Confidence            99999999999999999999999988763    4432        455678889999887421 11              


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHH
Q 017523          162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCL  241 (370)
Q Consensus       162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  241 (370)
                        +.......|++++++++++||.|.+..|+..+++ ++... .+...++++.+.++....++.   . ..+...|..++
T Consensus       141 --~~~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~---~-~~~~~~~~~~l  212 (293)
T PRK10532        141 --DVSHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE---A-LWHWSILPLGL  212 (293)
T ss_pred             --CcccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc---c-cCCHHHHHHHH
Confidence              1122346799999999999999999999988777 46655 456677777666665543221   1 12223455668


Q ss_pred             HHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          242 YSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       242 ~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                      |.|+ ++.++|.+|++++++.++++++++.+++|+++.+++++++||+++..+++|+++|++|+....+.+++
T Consensus       213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~  285 (293)
T PRK10532        213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR  285 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999 99999999999999999999999999999999999999999999999999999999999888765433

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.98  E-value=1.3e-30  Score=242.66  Aligned_cols=272  Identities=12%  Similarity=0.127  Sum_probs=202.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccc-cchHHHHHHHHHHHHHHhHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLS-LGLRTFGWLFVASLIGVTANQN   80 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~   80 (370)
                      .++++.++||.+++++|.. .+ +||.++.++|++++.++++++...+++.+..+.. .+++++. ....+.++.+.++.
T Consensus        12 ~~l~a~~~wg~~~~~~k~~-~~-~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   88 (296)
T PRK15430         12 LALAAYFIWGIAPAYFKLI-YY-VPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIF-MLAVSAVLIGGNWL   88 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHH-HHHHHHHHHHHHHH
Confidence            4678889999999999985 44 9999999999999998888776554321110000 1223233 33456666689999


Q ss_pred             HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523           81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL  160 (370)
Q Consensus        81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++++|+++++++.++++.++.|+++.+++++++|||++++      +++|++++++|++++....               
T Consensus        89 ~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~~---------------  147 (296)
T PRK15430         89 LFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWTF---------------  147 (296)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHHc---------------
Confidence            9999999999999999999999999999999999999999      9999999999999885221               


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC-CchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHH
Q 017523          161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI-PNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELAC  239 (370)
Q Consensus       161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (370)
                          ++ .    ..++++++++||.|.+..|+..++. .+....+.+...++.+...+.   .......+...+...+..
T Consensus       148 ----~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  215 (296)
T PRK15430        148 ----GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQNPMSLNLL  215 (296)
T ss_pred             ----CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCCcHHHHHH
Confidence                11 1    1468889999999999999875432 122333344444443332111   111111122112222344


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       240 ~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      +.+.|+.+.++|.+|++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|+.|+.+...
T Consensus       216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4445557889999999999999999999999999999999999999999999999999999888777643

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.97  E-value=7.4e-30  Score=238.43  Aligned_cols=275  Identities=13%  Similarity=0.098  Sum_probs=214.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523            8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY   87 (370)
Q Consensus         8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   87 (370)
                      ++-....+..|.++++-.+|..+++.|+.++.+.+.+... ...+++++  .+++++.+++..|++. +++..+.+.|++
T Consensus        12 ~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~l~   87 (302)
T TIGR00817        12 FLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWS-SGLPKRLK--ISSALLKLLLPVAIVH-TIGHVTSNVSLS   87 (302)
T ss_pred             HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHH-hCCCCCCC--CCHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4444556788999976467999999999998777655421 11111222  3456799999999997 899999999999


Q ss_pred             ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCC
Q 017523           88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD  167 (370)
Q Consensus        88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      |++++.++++.++.|+++.+++++++|||++++      ++.|++++++|+++..  .                  .+.+
T Consensus        88 ~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~--~------------------~~~~  141 (302)
T TIGR00817        88 KVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALAS--D------------------TELS  141 (302)
T ss_pred             hccHHHHHHHHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhc--C------------------Cccc
Confidence            999999999999999999999999999999999      9999999999997653  1                  1122


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCcc---cccc----cc-hhHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISS--SIPNHSYSSAWMCFLASLESATVALLVEKNLE---AWTL----NS-FLEL  237 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~----~~-~~~~  237 (370)
                      ....|++++++|+++||+|.++.||..+  ++ |+...+.+++..+.+.+.++....++...   .+..    .. ...+
T Consensus       142 ~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (302)
T TIGR00817       142 FNWAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIY  220 (302)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHH
Confidence            3467999999999999999999999887  66 68999999999999998888776543210   1100    01 0112


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          238 ACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       238 ~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                      ...++.+. +....+.++++++++.+|++++++.+++|+++++++++++||+++..+++|+++++.|++++.+.|++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~  297 (302)
T TIGR00817       221 TVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ  297 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence            21223333 33333346668999999999999999999999999999999999999999999999999999875543

specificities overlap.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.97  E-value=1.8e-28  Score=227.40  Aligned_cols=290  Identities=14%  Similarity=0.157  Sum_probs=231.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHh
Q 017523            6 LQFLYAGVALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFE   84 (370)
Q Consensus         6 ~~~~~g~~~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (370)
                      .+++-.+..+.+....+.|.+ |..-.++-++.-+++..++..++++++. .....+++++++++.+++- ...+++...
T Consensus        21 lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~-~~~~~~~~~w~y~lla~~D-v~aN~~~v~   98 (334)
T PF06027_consen   21 LSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKK-WLKVLKRPWWKYFLLALLD-VEANYLVVL   98 (334)
T ss_pred             HHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhcccccc-chhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence            346677788888887777766 6666777777766666666555443221 1122225588999999998 888999999


Q ss_pred             hccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccC
Q 017523           85 GLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSS  164 (370)
Q Consensus        85 al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      |++||+.+.++++..++-+++++++++++|+|+++.      |++|++++++|+.++...+....           ..+.
T Consensus        99 a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~~-----------~~~~  161 (334)
T PF06027_consen   99 AYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLSG-----------SDSS  161 (334)
T ss_pred             HhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeeccccc-----------ccCC
Confidence            999999999999999999999999999999999999      99999999999998865543211           0113


Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccchhHHHHHHHH
Q 017523          165 GADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNL-EAWTLNSFLELACCLYS  243 (370)
Q Consensus       165 ~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~  243 (370)
                      .+++...|++++++|+++||+++++.|+..++. +......+..+++.++..+.....+.+. +..+. +...+..++.-
T Consensus       162 ~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w-~~~~~~~~v~~  239 (334)
T PF06027_consen  162 SGSNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERSGIESIHW-TSQVIGLLVGY  239 (334)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehhhhhccCC-ChhhHHHHHHH
Confidence            456789999999999999999999999999998 5889999999999999988887666532 22222 22233333333


Q ss_pred             HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhH
Q 017523          244 GIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLE  316 (370)
Q Consensus       244 gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~  316 (370)
                      +++.+.-|.+....++..+|+.+++-..+..+++++++++++|+++++.+++|.++|++|++++...++++.+
T Consensus       240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~  312 (334)
T PF06027_consen  240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEE  312 (334)
T ss_pred             HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcccc
Confidence            3477888888999999999999999999999999999999999999999999999999999999887665443

Some of the sequences in this family are annotated as putative membrane proteins.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.96  E-value=6.9e-28  Score=222.76  Aligned_cols=270  Identities=13%  Similarity=0.098  Sum_probs=200.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhh-cccccccccchHHHHHHHHHHHHHHhHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYIST-RKSSYRLSLGLRTFGWLFVASLIGVTANQN   80 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (370)
                      +.++++++|+..++..|...++ .++.  .+++...++++++|+...+. +..+++   ..++++...+.+.++...++.
T Consensus         5 ~~~~aa~~~a~~~~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         5 LVVFSALMHAGWNLMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSR---LPATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCC---cchhhHHHHHHHHHHHHHHHH
Confidence            4578899999999999976655 4453  47777788888888776542 222221   113344444445555589999


Q ss_pred             HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523           81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL  160 (370)
Q Consensus        81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  160 (370)
                      +++.|+++.+++.++.+.++.|+++.+++++++|||++++      +++|+.+++.|++++...+               
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~~~---------------  137 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGLSR---------------  137 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhccc---------------
Confidence            9999999999999999999999999999999999999999      9999999999999875221               


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhH----HHHHHHHHHHHHHHHHHHHhcCCcccccccchhH
Q 017523          161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSY----SSAWMCFLASLESATVALLVEKNLEAWTLNSFLE  236 (370)
Q Consensus       161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  236 (370)
                          ....+..|..++++++++|++|.++.|+..++.+ +..    .+.+.....++...+.....+..  .+. .....
T Consensus       138 ----~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~  209 (281)
T TIGR03340       138 ----FAQHRRKAYAWALAAALGTAIYSLSDKAAALGVP-AFYSALGYLGIGFLAMGWPFLLLYLKRHGR--SMF-PYARQ  209 (281)
T ss_pred             ----ccccchhHHHHHHHHHHHHHHhhhhccccccchh-cccccHHHHHHHHHHHHHHHHHHHHHHhcc--chh-hhHHH
Confidence                1112346888999999999999999998655442 221    22222222212111211111111  111 12234


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhh
Q 017523          237 LACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYV  306 (370)
Q Consensus       237 ~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l  306 (370)
                      ++.+++.+. ++.++|.+|++++++.++++++.+.+++|+++.+++++++||+++..+++|+++|++|+++
T Consensus       210 ~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l  280 (281)
T TIGR03340       210 ILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence            556677777 9999999999999999999999999999999999999999999999999999999999875

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.96  E-value=5.5e-27  Score=222.58  Aligned_cols=274  Identities=14%  Similarity=0.089  Sum_probs=214.5

Q ss_pred             HHHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523            8 FLYAGVALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGL   86 (370)
Q Consensus         8 ~~~g~~~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   86 (370)
                      .+-.......|.+++. +| |+.++.+|++++.+++..+.... .+++|+....++++..++..|+++... +...+.|+
T Consensus        59 ~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~llp~gl~~~~~-~~~~~~sl  135 (350)
T PTZ00343         59 ALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATG-FRKIPRIKSLKLFLKNFLPQGLCHLFV-HFGAVISM  135 (350)
T ss_pred             HHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            3445567788999987 99 99999999999988765543222 222233322234678889999998444 55577999


Q ss_pred             cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523           87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA  166 (370)
Q Consensus        87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      ++++++.++++..+.|+++++++++++|||++++      ++.+++++++|+++.+..                    +.
T Consensus       136 ~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~~--------------------~~  189 (350)
T PTZ00343        136 GLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASVK--------------------EL  189 (350)
T ss_pred             hhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheecc--------------------cc
Confidence            9999999999999999999999999999999999      999999999999997521                    12


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhccCC------chhHHHHHHHHHHHHHHHHHHHHhcCCc--cccc----ccch
Q 017523          167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIP------NHSYSSAWMCFLASLESATVALLVEKNL--EAWT----LNSF  234 (370)
Q Consensus       167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~----~~~~  234 (370)
                      +....|++++++|+++||+|+++.|+..++.+      ++.....++...+.+++.|+....+...  ..+.    ....
T Consensus       190 ~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~  269 (350)
T PTZ00343        190 HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTN  269 (350)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccc
Confidence            23578999999999999999999999876531      3555666668889988888877554321  1110    0011


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH----HHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          235 LELACCLYSGIALAISFFLQAW----CISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       235 ~~~~~~l~~gi~~~~~~~~~~~----~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      ..+..+++..+.++++|++|..    ++++++|.+.++..+++|+++++++++++||+++..+++|.++++.|++++.+.
T Consensus       270 ~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        270 YTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            1223345544478999999985    999999999999999999999999999999999999999999999999998764

>TIGR00688 rarD rarD protein

Probab=99.95  E-value=3.6e-26  Score=208.50  Aligned_cols=246  Identities=12%  Similarity=0.057  Sum_probs=180.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc--cccc-c-chHHHHHHHHHHHHHHhH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS--YRLS-L-GLRTFGWLFVASLIGVTA   77 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~--~~~~-~-~~~~~~~~~~~g~~~~~~   77 (370)
                      .++++.++||.+++++|. ..+ +||.+++++|++++++++.++...+++++.  ++.+ . +.+++..+...|++. ++
T Consensus         6 ~~i~a~~~wg~~~~~~k~-~~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~   82 (256)
T TIGR00688         6 VSLLASFLFGYMYYYSKL-LKP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI-GF   82 (256)
T ss_pred             HHHHHHHHHHHHHHHHHH-hcc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH-HH
Confidence            467889999999999998 445 999999999999999888776655433211  1111 1 112244566777774 89


Q ss_pred             HHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCC
Q 017523           78 NQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPP  157 (370)
Q Consensus        78 ~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~  157 (370)
                      ++.+++.|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++...+            
T Consensus        83 ~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~~------------  144 (256)
T TIGR00688        83 NWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVLK------------  144 (256)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHHc------------
Confidence            9999999999999999999999999999999999999999999      9999999999998875321            


Q ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHH
Q 017523          158 KSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLEL  237 (370)
Q Consensus       158 ~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  237 (370)
                             ++ ..    .++++++++||.|.+..|+..++.  ....... .........+..... ............+|
T Consensus       145 -------~~-~~----~~~l~aa~~~a~~~i~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  208 (256)
T TIGR00688       145 -------GS-LP----WEALVLAFSFTAYGLIRKALKNTD--LAGFCLE-TLSLMPVAIYYLLQT-DFATVQQTNPFPIW  208 (256)
T ss_pred             -------CC-ch----HHHHHHHHHHHHHHHHHhhcCCCC--cchHHHH-HHHHHHHHHHHHHHh-ccCcccccCchhHH
Confidence                   11 11    357889999999999999975432  2222111 111111211111111 11110111222367


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 017523          238 ACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLF  284 (370)
Q Consensus       238 ~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~  284 (370)
                      ..+++.|+.+.++|.++++++|+.++++++.+.+++|+++.++++++
T Consensus       209 ~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       209 LLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            77777888888999999999999999999999999999999999864

This uncharacterized protein is predicted to have many membrane-spanning domains.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=1.7e-23  Score=193.64  Aligned_cols=274  Identities=20%  Similarity=0.276  Sum_probs=209.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY   82 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (370)
                      ++...+.|+.+....|...+...++....+.|...+.++..+.....+...++.    .++.++..+.+.+....++.++
T Consensus        12 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~   87 (292)
T COG0697          12 LLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPA----LRPWLLLLLLALLGLALPFLLL   87 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhccccccc----ccchHHHHHHHHHHHHHHHHHH
Confidence            456678999999999998865356666667799998887444332211101111    1114456666666679999999


Q ss_pred             HhhccccchhHHHHhhhhHHHHHHHHHH-HhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523           83 FEGLYLSSSTVASAMTNLMPAVTFVMAF-IAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI  161 (370)
Q Consensus        83 ~~al~~~~~~~a~~i~~~~P~~~~lla~-~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  161 (370)
                      +.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+++++.|++++...+..              
T Consensus        88 ~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~~~~--------------  147 (292)
T COG0697          88 FLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLGGGG--------------  147 (292)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecCCCc--------------
Confidence            9999999999999999999999999996 7779999999      999999999999998532211              


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHH-HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523          162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSA-WMCFLASLESATVALLVEKNLEAWTLNSFLELACC  240 (370)
Q Consensus       162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                        .... ...|+.++++++++||++.+..|+.. +. ++..... +...  .............. .  .......+..+
T Consensus       148 --~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~--~~~~~~~~~~~  217 (292)
T COG0697         148 --GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL--LALLLLLLFFLSGF-G--APILSRAWLLL  217 (292)
T ss_pred             --chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH--HHHHHHHHHHhccc-c--ccCCHHHHHHH
Confidence              0001 57999999999999999999999987 55 3555554 3333  11111212111111 1  22334567888


Q ss_pred             HHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          241 LYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       241 l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      .+.|+ ++++++.++.+++++.++..++.+.+++|+++.+++++++||+++..+++|+++++.|+.+...+
T Consensus       218 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~  288 (292)
T COG0697         218 LYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR  288 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence            88999 88899999999999999999999999999999999999999999999999999999999998876

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.92  E-value=3.3e-26  Score=198.16  Aligned_cols=279  Identities=16%  Similarity=0.121  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523            8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQNAYFEGL   86 (370)
Q Consensus         8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   86 (370)
                      ..+....++.+..++  .+|+...-.|+++-.++-.|..++++...+ |+     .+..+++++|+.| +.+..+.|+|+
T Consensus        47 ~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~-----g~R~~LiLRg~mG-~tgvmlmyya~  118 (346)
T KOG4510|consen   47 YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGPE-----GKRKWLILRGFMG-FTGVMLMYYAL  118 (346)
T ss_pred             HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecCC-----CcEEEEEeehhhh-hhHHHHHHHHH
Confidence            344444444444443  689999999977777766665444332221 22     1134578899998 66777778899


Q ss_pred             cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523           87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA  166 (370)
Q Consensus        87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      +|.+.++|++|.+++|.||.+++|.++|||.++.      ..+|..+.+.|+++++  +++.++....    ++...+..
T Consensus       119 ~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG~~t----~g~~~s~~  186 (346)
T KOG4510|consen  119 MYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFGDTT----EGEDSSQV  186 (346)
T ss_pred             hhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccCCCc----cccccccc
Confidence            9999999999999999999999999999999988      9999999999999986  5554433111    11112233


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-hhHHHHHHHHHH
Q 017523          167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNS-FLELACCLYSGI  245 (370)
Q Consensus       167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~gi  245 (370)
                      +....|...++.++++.|...++.|++.|+. +....+.+..+++.+..++.....+    .|.+++ ..+|+.++.+|+
T Consensus       187 ~~~~~gt~aai~s~lf~asvyIilR~iGk~~-h~~msvsyf~~i~lV~s~I~~~~ig----~~~lP~cgkdr~l~~~lGv  261 (346)
T KOG4510|consen  187 EYDIPGTVAAISSVLFGASVYIILRYIGKNA-HAIMSVSYFSLITLVVSLIGCASIG----AVQLPHCGKDRWLFVNLGV  261 (346)
T ss_pred             cccCCchHHHHHhHhhhhhHHHHHHHhhccc-cEEEEehHHHHHHHHHHHHHHhhcc----ceecCccccceEEEEEehh
Confidence            5567788999999999999999999999988 4766777888888887766655332    245443 457888888999


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      .+++.+.+.+.++++..+..++++.+.+.++|.++++++|||.+++++|.|+++|+.+.+.+...|
T Consensus       262 fgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k  327 (346)
T KOG4510|consen  262 FGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK  327 (346)
T ss_pred             hhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999998877765443

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.91  E-value=1.6e-22  Score=174.39  Aligned_cols=269  Identities=15%  Similarity=0.096  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHH
Q 017523            4 VALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYF   83 (370)
Q Consensus         4 ~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   83 (370)
                      +.+++.--....+.|..+.. +.+...+.+|..+++++++++.  +.+++  +  +.++++..+...|+.. ...+.+||
T Consensus        18 l~amvsiq~Gas~Ak~LFP~-vG~~g~t~lRl~~aaLIll~l~--RPwr~--r--~~~~~~~~~~~yGvsL-g~MNl~FY   89 (292)
T COG5006          18 LVAMVSIQSGASFAKSLFPL-VGAAGVTALRLAIAALILLALF--RPWRR--R--LSKPQRLALLAYGVSL-GGMNLLFY   89 (292)
T ss_pred             HHHHHHHHhhHHHHHHHccc-cChhhHHHHHHHHHHHHHHHHh--hHHHh--c--cChhhhHHHHHHHHHH-HHHHHHHH
Confidence            34444444555688888888 9999999999999999888763  32221  1  2236689999999997 88889999


Q ss_pred             hhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccccc
Q 017523           84 EGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFS  163 (370)
Q Consensus        84 ~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~  163 (370)
                      .+++..|.+.+..+.++-|+.+.+++-   |..   +      ..+.+.+++.|..++.-. +                .
T Consensus        90 ~si~riPlGiAVAiEF~GPL~vA~~~s---Rr~---~------d~vwvaLAvlGi~lL~p~-~----------------~  140 (292)
T COG5006          90 LSIERIPLGIAVAIEFTGPLAVALLSS---RRL---R------DFVWVALAVLGIWLLLPL-G----------------Q  140 (292)
T ss_pred             HHHHhccchhhhhhhhccHHHHHHHhc---cch---h------hHHHHHHHHHHHHhheec-c----------------C
Confidence            999999999999999999999887643   222   2      666778889999888522 1                2


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHH
Q 017523          164 SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYS  243 (370)
Q Consensus       164 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (370)
                      +....+..|..+++.++.||+.|.+..+|..+.. +....+...+.++.++..|+.....++    ....+.....-+..
T Consensus       141 ~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~ag~----~l~~p~ll~laLgv  215 (292)
T COG5006         141 SVWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQAGP----ALFSPSLLPLALGV  215 (292)
T ss_pred             CcCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhhcch----hhcChHHHHHHHHH
Confidence            3456788999999999999999999999988655 467777888999999998988744322    22223345555778


Q ss_pred             HH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          244 GI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       244 gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      ++ ++.+.|.+-..++++.++...+.+..++|.++.+.+++++||++|..||+|.++|+.+..-..+..+|+
T Consensus       216 avlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~  287 (292)
T COG5006         216 AVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP  287 (292)
T ss_pred             HHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence            88 999999999999999999999999999999999999999999999999999999999988777755543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.89  E-value=1.2e-21  Score=181.52  Aligned_cols=271  Identities=13%  Similarity=0.095  Sum_probs=202.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      ..++++++||..++..|...  |.++.++.  |..++.+++..+....++   |+.+. .+.+..-++.|.+ ...++.+
T Consensus         5 ~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~---~~~~~-~~~~~~g~l~G~~-w~ig~~~   75 (290)
T TIGR00776         5 IALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL---PEFWA-LSIFLVGLLSGAF-WALGQIN   75 (290)
T ss_pred             HHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC---Ccccc-cHHHHHHHHHHHH-HHhhhhh
Confidence            45778999999999999975  68888876  788888877666555432   11111 1223334444555 6899999


Q ss_pred             HHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccce----eeehhhhhhhhHHHhhhcCCccccccCCC
Q 017523           82 YFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAK----ILGTIFCVGGAITMALLKGPKLVNEEFIP  156 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~----~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~  156 (370)
                      |+.+.++++++.+..+.+ +.|++..+++.+++|||.+++      +    ++|+++.++|++++...++....      
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~~~~~~~------  143 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRSKDKSAG------  143 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEeccccccc------
Confidence            999999999999999998 888999999999999999988      8    99999999999887543221100      


Q ss_pred             CCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHH---HHHHHHHHHHHHhcCCcccccccc
Q 017523          157 PKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCF---LASLESATVALLVEKNLEAWTLNS  233 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~~~  233 (370)
                            .+...+...|.+++++++++|+.|.+..|+.  ++ ++.+.++.+..   .++++..+..  . +. ..+  .+
T Consensus       144 ------~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~g~~~~~~~~~~~~--~-~~-~~~--~~  208 (290)
T TIGR00776       144 ------IKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAIGMVIGGIIFNLGH--I-LA-KPL--KK  208 (290)
T ss_pred             ------cccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHHHHHHHHHHHHHHH--h-cc-cch--HH
Confidence                  0000234779999999999999999999976  35 57777554444   3333222211  1 11 111  22


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh-ccCceeeecchhhHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhhe
Q 017523          234 FLELACCLYSGIALAISFFLQAWCIS-ERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVL  308 (370)
Q Consensus       234 ~~~~~~~l~~gi~~~~~~~~~~~~l~-~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~  308 (370)
                      ...+..++ .|+..++++.+|..+.+ +.++++.+++...+|+.+++++++++||+.+..++    +|.++|+.|+.+..
T Consensus       209 ~~~~~~~~-~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       209 YAILLNIL-PGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            23343444 77767999999999999 99999999999999999999999999999999999    99999999988764


Q ss_pred             e
Q 017523          309 W  309 (370)
Q Consensus       309 ~  309 (370)
                      .
T Consensus       288 ~  288 (290)
T TIGR00776       288 I  288 (290)
T ss_pred             c
Confidence            4

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.86  E-value=1.3e-19  Score=160.72  Aligned_cols=277  Identities=12%  Similarity=0.065  Sum_probs=222.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHHHHhHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSS-YRLSLGLRTFGWLFVASLIGVTANQN   80 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (370)
                      ..+.+.++||..+...|... + .++.++...|.+-+..+++.+....++.+. ....++.|.+....+.+++- ..++.
T Consensus        11 ~~l~Ay~lwG~lp~y~kll~-~-~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li-~~nW~   87 (293)
T COG2962          11 LALLAYLLWGLLPLYFKLLE-P-LPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI-GLNWW   87 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHc-c-CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH-HHHHH
Confidence            45778999999999999974 3 899999999999999888777665544332 22223335577777777775 99999


Q ss_pred             HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcc
Q 017523           81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSL  160 (370)
Q Consensus        81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~  160 (370)
                      .|.+|.+...+-+++.=.+..|++..+++.+++|||+++.      |++++.++.+||...+...|+             
T Consensus        88 lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~g~-------------  148 (293)
T COG2962          88 LFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLLGS-------------  148 (293)
T ss_pred             HhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHcCC-------------
Confidence            9999999999999999999999999999999999999988      999999999999998765432             


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHH
Q 017523          161 IFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACC  240 (370)
Q Consensus       161 ~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (370)
                             -.+    .++.=+++|+.|-.+-|+..  . |+.+....-+..-.+......+..+.+.+.....+...+..+
T Consensus       149 -------lpw----val~la~sf~~Ygl~RK~~~--v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LL  214 (293)
T COG2962         149 -------LPW----VALALALSFGLYGLLRKKLK--V-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLL  214 (293)
T ss_pred             -------CcH----HHHHHHHHHHHHHHHHHhcC--C-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHH
Confidence                   233    45666789999998877643  3 466666666666666655555544443221222345667777


Q ss_pred             HHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          241 LYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       241 l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      +..|+.+.++..++..+-|+.+-++.+.++|.+|..-.+++++++||+++..+++..+.|-+|+.++.++.-++
T Consensus       215 v~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~  288 (293)
T COG2962         215 VLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT  288 (293)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999998765443

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=99.84  E-value=1.3e-18  Score=162.49  Aligned_cols=282  Identities=13%  Similarity=0.077  Sum_probs=217.6

Q ss_pred             HHHHHHHHHHHhC-CCC--chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523           11 AGVALFTRVALVQ-GLS--PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY   87 (370)
Q Consensus        11 g~~~~~~k~~~~~-g~~--p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   87 (370)
                      ..+.++-...... +..  |..+++..++...+...+.....+++..++     +.+..++..+++. .+...+.+.|++
T Consensus        13 ~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~al~   86 (303)
T PF08449_consen   13 CSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSRK-----IPLKKYAILSFLF-FLASVLSNAALK   86 (303)
T ss_pred             HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCCc-----ChHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            3444555555543 234  888899988888877666554433121121     2366777888886 888999999999


Q ss_pred             ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCC
Q 017523           88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGAD  167 (370)
Q Consensus        88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      |.+...-+++..+.|+++++++.+++|+|.+++      +++++++..+|+++....+......          ......
T Consensus        87 ~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~~----------~~~~~~  150 (303)
T PF08449_consen   87 YISYPTQIVFKSSKPIPVMILGVLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSSS----------SNSSSF  150 (303)
T ss_pred             hCChHHHHHHhhhHHHHHHHHHHHhcCccccHH------HHHHHHHHHhhHheeeecccccccc----------cccccc
Confidence            999999999999999999999999999999999      9999999999999987654332110          011122


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHH--hcCCccc--ccccchhHHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALL--VEKNLEA--WTLNSFLELACCLY  242 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~  242 (370)
                      .+..|.++.+++.++.|...+.+++..++++ ++...+++.+.++.+...+....  .+.....  +....+..+..++.
T Consensus       151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~  230 (303)
T PF08449_consen  151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLL  230 (303)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHH
Confidence            3344999999999999999999999887653 46888999999999988777776  2221111  11223334555555


Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          243 SGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       243 ~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      ..+++.++.....+.+++.+|...++...++-+++++++++++|+++++.+|+|.++++.|..+..+.|+|+
T Consensus       231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~  302 (303)
T PF08449_consen  231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK  302 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence            666778888888899999999999999999999999999999999999999999999999999999877664

; GO: 0055085 transmembrane transport

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.84  E-value=3.5e-20  Score=168.37  Aligned_cols=230  Identities=14%  Similarity=0.141  Sum_probs=189.2

Q ss_pred             HHHHHHH-HHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           63 TFGWLFV-ASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        63 ~~~~~~~-~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      |..++.+ .+.+ .++.++.+..|+.|++++..+++.+++-+||..++.++..||+++.      |++++.+++.|++++
T Consensus       157 ~~ak~sl~fc~l-WF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiV  229 (416)
T KOG2765|consen  157 QTAKLSLFFCPL-WFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIV  229 (416)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEE
Confidence            4444433 4444 5889999999999999999999999999999999999999999999      999999999999999


Q ss_pred             hhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC---chhHHHHHHHHHHHHHHHHH
Q 017523          142 ALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP---NHSYSSAWMCFLASLESATV  218 (370)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~  218 (370)
                      +..+...-            ++..++....|+++++++|+.||.|.++.||...++.   |--.+..+..++..++++|.
T Consensus       230 t~~~s~~~------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~  297 (416)
T KOG2765|consen  230 TMGDSKQN------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPP  297 (416)
T ss_pred             Eecccccc------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHH
Confidence            86643211            1234567799999999999999999999998765552   22333445556666666655


Q ss_pred             HHHhcC-CcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhH
Q 017523          219 ALLVEK-NLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIG  296 (370)
Q Consensus       219 ~~~~~~-~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G  296 (370)
                      ...... ..+.++.++......++..+. +++++-++|.++.-..+|..++.-..++++.|.+.+.++-|.++++.+++|
T Consensus       298 l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiG  377 (416)
T KOG2765|consen  298 LIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIG  377 (416)
T ss_pred             HHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHH
Confidence            443221 344567777777778888888 999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhheecc
Q 017523          297 AFAVIIGLYVVLWGK  311 (370)
Q Consensus       297 ~~lI~~g~~l~~~~~  311 (370)
                      .+.|.+|.+.++...
T Consensus       378 si~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  378 SIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHhheeccc
Confidence            999999999998754

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=99.76  E-value=1.4e-18  Score=150.03  Aligned_cols=266  Identities=11%  Similarity=0.123  Sum_probs=207.8

Q ss_pred             HHHHHHHHhCCCC-chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchh
Q 017523           14 ALFTRVALVQGLS-PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSST   92 (370)
Q Consensus        14 ~~~~k~~~~~g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~   92 (370)
                      ...+......|++ |..-+|..+..-+++..|+..++++    .+..+   |.++++.++.. .-.+++...|.||++.+
T Consensus        34 a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~----~~~~~---~~hYilla~~D-VEaNy~vV~AyQyTsmt  105 (336)
T KOG2766|consen   34 AFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRK----YIKAK---WRHYILLAFVD-VEANYFVVKAYQYTSMT  105 (336)
T ss_pred             hhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhH----HHHHH---HHHhhheeEEe-ecccEEEeeehhhcchH
Confidence            3334444444444 7777888898888999998877552    11111   55688888887 66777888999999999


Q ss_pred             HHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHH
Q 017523           93 VASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLG  172 (370)
Q Consensus        93 ~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G  172 (370)
                      .++.+..-.-..+.+++|+++|.|.++-      |+.|+.+|++|++.+++.+-.. +           ..+++++...|
T Consensus       106 Si~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sDV~a-g-----------d~aggsnp~~G  167 (336)
T KOG2766|consen  106 SIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSDVHA-G-----------DRAGGSNPVKG  167 (336)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEeeecc-c-----------cccCCCCCccC
Confidence            9999998777777899999999999999      9999999999999987654321 1           13556788999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523          173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF  252 (370)
Q Consensus       173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~  252 (370)
                      +.+.+++|-+||..++..+.+.|+. |...++....++|+++..+-.+.-.+...  ...++......+...++.++-|.
T Consensus       168 D~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~~~~~~~--tl~w~~~i~~yl~f~L~MFllYs  244 (336)
T KOG2766|consen  168 DFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIFERHHVS--TLHWDSAIFLYLRFALTMFLLYS  244 (336)
T ss_pred             cEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhhhcccee--eEeehHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998 69999999999999999888443222211  11111222222223338888888


Q ss_pred             HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      +....+|..+++..++-..+.-.++.++  ..||=+.+|...+..+.+..|..++.-+
T Consensus       245 l~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r  300 (336)
T KOG2766|consen  245 LAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR  300 (336)
T ss_pred             hhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence            8889999999999999999999999998  6778789999999999999999888443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=99.73  E-value=6.2e-17  Score=148.66  Aligned_cols=274  Identities=14%  Similarity=0.072  Sum_probs=213.7

Q ss_pred             HHHHHHHHHh--CCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 017523           13 VALFTRVALV--QGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSS   90 (370)
Q Consensus        13 ~~~~~k~~~~--~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   90 (370)
                      ..+..|..++  +.--|..++..+...+.+.++....++.++..+ .+ +...+..++..|+.. ++...+.+.+++|.+
T Consensus        32 ~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~-~~-~~~~~~~llpl~~~~-~~~~v~~n~Sl~~v~  108 (316)
T KOG1441|consen   32 VIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK-IS-SKLPLRTLLPLGLVF-CISHVLGNVSLSYVP  108 (316)
T ss_pred             eEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc-cc-cccchHHHHHHHHHH-HHHHHhcchhhhccc
Confidence            3445688887  435588888887777776666554443332222 11 223377888899997 999999999999999


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchH
Q 017523           91 STVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWL  170 (370)
Q Consensus        91 ~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      ++..+++..+.|+++.++++++.+|+.+..      .+..++..+.|+.+-+..                    ..+.++
T Consensus       109 VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~~--------------------e~~fn~  162 (316)
T KOG1441|consen  109 VSFYQTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASVT--------------------ELSFNL  162 (316)
T ss_pred             hhHHHHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeeec--------------------cccccH
Confidence            999999999999999999999999999999      889999988999886532                    234679


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc--cCC-chhHHHHHHHHHHHHHHH-HHHHHhcCCcc---cccccchhHHHHHHHH
Q 017523          171 LGCFLLFGSSWFWSFWMILQVPISS--SIP-NHSYSSAWMCFLASLESA-TVALLVEKNLE---AWTLNSFLELACCLYS  243 (370)
Q Consensus       171 ~G~~l~l~aa~~~a~~~v~~~~~~~--~~~-~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~---~~~~~~~~~~~~~l~~  243 (370)
                      .|.+.++++.+..+..+++.++..+  ++. |++.+..++.-++.+.+. |.....+++..   .....+.. ....++.
T Consensus       163 ~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  241 (316)
T KOG1441|consen  163 FGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILLLN  241 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHHHH
Confidence            9999999999999999999998873  221 789999999999999888 77776655433   11111112 2222333


Q ss_pred             HHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhH
Q 017523          244 GIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLE  316 (370)
Q Consensus       244 gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~  316 (370)
                      .++...-....+..+.+++|.+.++.+...-++.++.++++|++++++.+.+|.++.++|++++.+.|.++++
T Consensus       242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~  314 (316)
T KOG1441|consen  242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK  314 (316)
T ss_pred             HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence            3455555666778999999999999999999999999999999999999999999999999999988766543

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.63  E-value=7.3e-15  Score=125.70  Aligned_cols=226  Identities=14%  Similarity=0.089  Sum_probs=186.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      -+.+..++.- ..+.+...+.|+||.|=-...+=.++-|+-+++++.++.+.+.+|+      |..++++.++|+.+. +
T Consensus        85 ~~~YaAcs~s-YLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValF-m  156 (337)
T KOG1580|consen   85 TKMYAACSAS-YLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALF-M  156 (337)
T ss_pred             chHHHHHHHH-HHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHh-h
Confidence            4455555555 4888999999999998877777788999999999999999999999      999999999999998 4


Q ss_pred             hcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHh
Q 017523          144 LKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLV  222 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~  222 (370)
                      +++....            +..+.....|.++.+++-..-+.....|.++.+.+. ....++++.++.+++.+..-.++.
T Consensus       157 YK~~Kv~------------g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfT  224 (337)
T KOG1580|consen  157 YKENKVG------------GAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFT  224 (337)
T ss_pred             ccccccC------------CCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheeh
Confidence            5543321            234456789999999999999999999998876652 357788999999998876666644


Q ss_pred             cCCcc--cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Q 017523          223 EKNLE--AWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV  300 (370)
Q Consensus       223 ~~~~~--~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI  300 (370)
                      +.-++  -+....+..|+-+...++++++++++.+..+...+|.+.|+...+.-.++++.++++|+++++..||+|..++
T Consensus       225 GElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlV  304 (337)
T KOG1580|consen  225 GELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLV  304 (337)
T ss_pred             hhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence            33211  1223455678888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhee
Q 017523          301 IIGLYVVLW  309 (370)
Q Consensus       301 ~~g~~l~~~  309 (370)
                      ..|+..-..
T Consensus       305 F~aL~~D~~  313 (337)
T KOG1580|consen  305 FSALTADVV  313 (337)
T ss_pred             HHHhhhHhh
Confidence            999887643

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.59  E-value=3.6e-14  Score=110.27  Aligned_cols=135  Identities=17%  Similarity=0.169  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523          173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF  252 (370)
Q Consensus       173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~  252 (370)
                      .++++++++++++..++.|--.++. ||..-+.....+..+.+..+.+..+ +...........|..++..|+.+++++.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g-~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTG-NWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcC-ceecccccCcceehhhhHHHHHHHHHHH
Confidence            5789999999999999999888877 7999999999998888877777553 3222222255678888889999999999


Q ss_pred             HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      +|+++++..+++.+..+.-++|+++++++++++||+++..+++|+.+|++|..++..
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            999999999999999999999999999999999999999999999999999887754

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=99.56  E-value=1.2e-13  Score=122.93  Aligned_cols=273  Identities=14%  Similarity=0.092  Sum_probs=194.3

Q ss_pred             HHHHHHHHHHHHHHhC---CCC-chhHHHHHHHHHHHHHHHHHHHhhccc-ccccccchHHHH-HHHHHHHHHHhHHHHH
Q 017523            8 FLYAGVALFTRVALVQ---GLS-PRVFVVYRQGTAALIMAPIVYISTRKS-SYRLSLGLRTFG-WLFVASLIGVTANQNA   81 (370)
Q Consensus         8 ~~~g~~~~~~k~~~~~---g~~-p~~~~~~R~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~g~~~~~~~~~~   81 (370)
                      ++|=...+..+...+.   .++ |..++.+.+++-+++........+++. +.+...++++.+ ++...|+.+ +++..+
T Consensus        22 l~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalat-a~DIGL  100 (349)
T KOG1443|consen   22 LLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALAT-ALDIGL  100 (349)
T ss_pred             HHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhh-hccccc
Confidence            4444444444444332   122 788888887777666554443333322 223344454444 555677776 999999


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI  161 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  161 (370)
                      .+++++|++.+.-++..+.+++|+.+++.+|.-||+++.      -..-+++..+|+++++..                 
T Consensus       101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~K-----------------  157 (349)
T KOG1443|consen  101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTYK-----------------  157 (349)
T ss_pred             ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEec-----------------
Confidence            999999999999999999999999999999999999988      455555556666666432                 


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC----CchhHHHHHHHHHHHHHHHHHHHHhcCCccc-----cc-c
Q 017523          162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI----PNHSYSSAWMCFLASLESATVALLVEKNLEA-----WT-L  231 (370)
Q Consensus       162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~-~  231 (370)
                         ..+.+..|..+.++++++-++--.+.+...++.    ++|.+..+..+....+.+.++.+..|+....     |. .
T Consensus       158 ---sTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~  234 (349)
T KOG1443|consen  158 ---STQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQ  234 (349)
T ss_pred             ---ccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhc
Confidence               223567888888777776666555554444332    3688888888888888888888888774322     11 1


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHH---HHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523          232 NSFLELACCLYSGIALAISFFLQA---WCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV  307 (370)
Q Consensus       232 ~~~~~~~~~l~~gi~~~~~~~~~~---~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~  307 (370)
                      .+...+..+.+.+.++.+++.+..   .-+.+++..+.++.+-..-+.+.++|..+.+|.++...|+|..+...|+...
T Consensus       235 d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  235 DTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH  313 (349)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence            223345555555556666665544   5578899999999999999999999999999999999999999999999988

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.53  E-value=2.1e-14  Score=115.69  Aligned_cols=125  Identities=24%  Similarity=0.396  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhcc
Q 017523            8 FLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLY   87 (370)
Q Consensus         8 ~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~   87 (370)
                      ++||.+.++.|...++ +||...+++|+.++.+ ++++..+.+++..++  .+.+++......|+++..+++.+++.+++
T Consensus         1 ~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKPFKN--LSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhccccccC--CChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            4799999999999988 9999999999999998 666666655543222  23355888888888867999999999999


Q ss_pred             ccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           88 LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        88 ~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      +++++.++.+.++.|+++.++++++++|+++++      +++|+++.++|++++.
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999998873

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=99.53  E-value=2.7e-13  Score=120.78  Aligned_cols=265  Identities=15%  Similarity=0.110  Sum_probs=207.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHH
Q 017523           26 SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVT  105 (370)
Q Consensus        26 ~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~  105 (370)
                      ++..+++..-+.+.++-..+.  ..++..++   ..+.++.+...++.. .+...+-|.|++|.+=-.-++-..+=-+-+
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l--~~~k~~~~---~~apl~~y~~is~tn-~~s~~~~yeaLKyvSyPtq~LaKscKmIPV  123 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAML--KWWKKELS---GVAPLYKYSLISFTN-TLSSWCGYEALKYVSYPTQTLAKSCKMIPV  123 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHH--hcccccCC---CCCchhHHhHHHHHh-hcchHHHHHHHHhccchHHHHHHHhhhhHH
Confidence            577888888888777664433  33322211   114488888888887 888999999999997766667777777778


Q ss_pred             HHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHH
Q 017523          106 FVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSF  185 (370)
Q Consensus       106 ~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~  185 (370)
                      +++..++.+.|.+..      +.+...+.-.|+-+..+.+..+.           .+..+.++...|..++...-++-++
T Consensus       124 mlmg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~s-----------~~~~g~~ns~~G~~Ll~~~L~fDgf  186 (327)
T KOG1581|consen  124 MLMGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSDS-----------SSKSGRENSPIGILLLFGYLLFDGF  186 (327)
T ss_pred             HHHHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCCC-----------ccccCCCCchHhHHHHHHHHHHHhh
Confidence            899999999999999      88888888899987765533321           1124456788999999999999999


Q ss_pred             HHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc--ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 017523          186 WMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL--EAWTLNSFLELACCLYSGIALAISFFLQAWCISERG  262 (370)
Q Consensus       186 ~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~  262 (370)
                      .+..|.++-+++. ....+++..++++++....-.+..+...  -++...++..+.-++....++.+++.+.++-+++.|
T Consensus       187 Tn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FG  266 (327)
T KOG1581|consen  187 TNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFG  266 (327)
T ss_pred             HHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcc
Confidence            9999999887653 5789999999999998876644322211  122334555677777777788999999999999999


Q ss_pred             ceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          263 PLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       263 ~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                      +.+.++++.+.-++++.++.+++|++++..||+|..++..|+++-...|++
T Consensus       267 slt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~  317 (327)
T KOG1581|consen  267 SLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK  317 (327)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998776655

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.50  E-value=8.5e-13  Score=118.71  Aligned_cols=227  Identities=15%  Similarity=0.138  Sum_probs=166.1

Q ss_pred             chHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523           60 GLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI  139 (370)
Q Consensus        60 ~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  139 (370)
                      ++|+.+++.+.+++. ++.+.+.|.++++.+++.-+++.++-.++|++++++++|+|++++      ||+++.+..+|+.
T Consensus        13 ~~~~~~~~~vPA~lY-~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~   85 (244)
T PF04142_consen   13 SPKDTLKLAVPALLY-AIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVV   85 (244)
T ss_pred             hHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHh
Confidence            347799999999997 999999999999999999999999999999999999999999999      9999999999999


Q ss_pred             HHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHH
Q 017523          140 TMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATV  218 (370)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~  218 (370)
                      ++..........   ++....+..........|.++.++++++-++..++.+|..|+.+ +....+......+.+...+.
T Consensus        86 lv~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~  162 (244)
T PF04142_consen   86 LVQLSSSQSSDN---SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA  162 (244)
T ss_pred             eeecCCcccccc---ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            875332221000   00000000112345689999999999999999999999988763 34555556666666666555


Q ss_pred             HHHhcCCc-c---cccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhH
Q 017523          219 ALLVEKNL-E---AWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL  294 (370)
Q Consensus       219 ~~~~~~~~-~---~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~  294 (370)
                      ....+.+. .   -+.-.+...|..+.    ...++=.+....+|+.+...=+....+..+++.++++++||.+++....
T Consensus       163 ~~~~~~~~~~~~g~f~G~~~~~~~~i~----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~  238 (244)
T PF04142_consen  163 LLLSDGSAISESGFFHGYSWWVWIVIF----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFL  238 (244)
T ss_pred             HhcccccccccCCchhhcchHHHHHHH----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHh
Confidence            44332210 0   11111122233222    2333334456688999999999999999999999999999999999999


Q ss_pred             hHHHHH
Q 017523          295 IGAFAV  300 (370)
Q Consensus       295 ~G~~lI  300 (370)
                      +|+.++
T Consensus       239 lg~~~V  244 (244)
T PF04142_consen  239 LGAALV  244 (244)
T ss_pred             hheecC
Confidence            998763

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.3e-11  Score=112.92  Aligned_cols=293  Identities=14%  Similarity=0.115  Sum_probs=208.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHHHHHHHHHHhhcc--cc------cccccchHHHHHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQG---LSPRVFVVYRQGTAALIMAPIVYISTRK--SS------YRLSLGLRTFGWLFVA   70 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g---~~p~~~~~~R~~~~~l~l~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~   70 (370)
                      .++...+-++......|..-..+   ..|...++.-..+-.++...+.+...|+  ++      +.....+++..++.+.
T Consensus        19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP   98 (345)
T KOG2234|consen   19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP   98 (345)
T ss_pred             HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence            35666777888889999987665   6677778887777777766666555322  11      1112223567888888


Q ss_pred             HHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccc
Q 017523           71 SLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLV  150 (370)
Q Consensus        71 g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~  150 (370)
                      +++. ++.+.++|.++.+.+++..++..++--+.|+++..+++++|++++      ||.++++...|+.++-....+.. 
T Consensus        99 a~iY-alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~~~~~~-  170 (345)
T KOG2234|consen   99 ALIY-ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLPSLSPT-  170 (345)
T ss_pred             HHHH-HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhccCCCCC-
Confidence            8997 888889999999999999999999999999999999999999999      99999999999999852211110 


Q ss_pred             cccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 017523          151 NEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNLEAW  229 (370)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  229 (370)
                              ++.+.....+...|....+.+++.-++..++.+|+.|+-. +.+..+.-..++|.+......+..+.+...|
T Consensus       171 --------~a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~  242 (345)
T KOG2234|consen  171 --------GAKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINE  242 (345)
T ss_pred             --------CccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence                    1111234567899999999999999999999999987643 2344445555556555554444333221111


Q ss_pred             c----ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhh
Q 017523          230 T----LNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLY  305 (370)
Q Consensus       230 ~----~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~  305 (370)
                      .    -.+...|..++..++++.    +-...+|+.+-..=+....+..+++.+.++.+++.++|....+|..+++.++.
T Consensus       243 ~gff~G~s~~vw~vVl~~a~gGL----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~  318 (345)
T KOG2234|consen  243 YGFFYGYSSIVWLVVLLNAVGGL----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIF  318 (345)
T ss_pred             CCccccccHHHHHHHHHHhccch----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHH
Confidence            1    122334555555555222    22334555555555566668889999999999999999999999999999999


Q ss_pred             hheeccchh
Q 017523          306 VVLWGKAED  314 (370)
Q Consensus       306 l~~~~~~~~  314 (370)
                      ++...++++
T Consensus       319 lY~~~P~~~  327 (345)
T KOG2234|consen  319 LYSLYPARD  327 (345)
T ss_pred             HhhcCCccc
Confidence            998555443

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.50  E-value=6.1e-14  Score=109.01  Aligned_cols=131  Identities=13%  Similarity=0.227  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY   82 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (370)
                      .++++++||...++.|...++ +||..-++.|..+..++++.+.+..++.+.+ -....|.+..+.+.|+.+ .+.+++|
T Consensus         8 ALLsA~fa~L~~iF~KIGl~~-vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~-~~~~~k~~lflilSGla~-glswl~Y   84 (140)
T COG2510           8 ALLSALFAGLTPIFAKIGLEG-VDPDFATTIRTIVILIFLLIVLLVTGNWQAG-GEIGPKSWLFLILSGLAG-GLSWLLY   84 (140)
T ss_pred             HHHHHHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHHHHHHHHhcCceecc-cccCcceehhhhHHHHHH-HHHHHHH
Confidence            467899999999999999976 9999999999999999888887776664443 112335588888889776 9999999


Q ss_pred             HhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           83 FEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        83 ~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      |.|++...++....+..++|+++.++++++++||++.+      +++|+.+..+|++++.
T Consensus        85 f~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          85 FRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            99999999999999999999999999999999999999      9999999999998864

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.44  E-value=4e-13  Score=108.19  Aligned_cols=124  Identities=18%  Similarity=0.357  Sum_probs=106.8

Q ss_pred             HHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHh
Q 017523          181 WFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCIS  259 (370)
Q Consensus       181 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~  259 (370)
                      ++||.+.+..|+..++. |+...+++++..+.+ ..++....+...  ....+...+...++.++ ++++++.+++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   76 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKP--FKNLSPRQWLWLLFLGLLGTALAYLLYFYALK   76 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhcccc--ccCCChhhhhhhhHhhccceehHHHHHHHHHH
Confidence            47899999999999998 599999999999998 666666544332  33344456777788888 78999999999999


Q ss_pred             ccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523          260 ERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       260 ~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~  308 (370)
                      +.++..++++.+++|+++.+++++++||+++..+++|.++++.|+++..
T Consensus        77 ~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   77 YISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=9.4e-11  Score=105.93  Aligned_cols=273  Identities=11%  Similarity=0.026  Sum_probs=203.7

Q ss_pred             HHHHHHHHHhCCCCchhHHH--HHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccc
Q 017523           13 VALFTRVALVQGLSPRVFVV--YRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSS   90 (370)
Q Consensus        13 ~~~~~k~~~~~g~~p~~~~~--~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~   90 (370)
                      +.+..|.++...=-|+.+..  ++++.+.+.+...-..+- -+.++++++.  .++.+...++. .++.+.-..+++|.+
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~l-v~~~~l~~~~--~kk~~P~~~lf-~~~i~t~~~slk~ln  102 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGL-VNFRPLDLRT--AKKWFPVSLLF-VGMLFTGSKSLKYLN  102 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhce-eecCCcChHH--HHHHccHHHHH-HHHHHHccccccccC
Confidence            44566777766333555555  777777665544322211 1124455444  77778888886 888888899999999


Q ss_pred             hhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchH
Q 017523           91 STVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWL  170 (370)
Q Consensus        91 ~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      +...+++-+.+|+++++....+++.+++.+      .+..+...++|...-...                    ....+.
T Consensus       103 Vpm~tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~--------------------d~sf~~  156 (314)
T KOG1444|consen  103 VPMFTVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT--------------------DLSFNL  156 (314)
T ss_pred             chHHHHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc--------------------cceecc
Confidence            999999999999999999999999888877      788888877777665422                    222345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc-cccc---ccchhHHHHHHHHHH
Q 017523          171 LGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL-EAWT---LNSFLELACCLYSGI  245 (370)
Q Consensus       171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~---~~~~~~~~~~l~~gi  245 (370)
                      .|..+++...++-+.+.+..|+..+... +.+.++++-++.+.+...+..++++.-. ....   ......+..+...++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            5899999999999999999998764321 4677888999999998888887664311 0111   122345666777777


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhh
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDL  315 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~  315 (370)
                      +++.--++-.++.+..++++.++.+......+.+-..+++|++.++..++|..+-++|-.++.+.+.+++
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k  306 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK  306 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence            6666667788999999999999999888888888888888899999999999999998888887665443

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=6.3e-12  Score=110.25  Aligned_cols=279  Identities=14%  Similarity=0.030  Sum_probs=200.3

Q ss_pred             HHHHHHHhCC----CCchhHHHHHHHHHHHHHHHHHHHhhcc----cccccccchHHHHHHHHHHHHHHhHHHHHHHhhc
Q 017523           15 LFTRVALVQG----LSPRVFVVYRQGTAALIMAPIVYISTRK----SSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGL   86 (370)
Q Consensus        15 ~~~k~~~~~g----~~p~~~~~~R~~~~~l~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al   86 (370)
                      .+.|+.+..-    -.|..++.+..++...+...+.....+-    ..|+++.+.+....+.-..+.. .+...+-.+.+
T Consensus        45 f~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVf-i~mI~fnnlcL  123 (347)
T KOG1442|consen   45 FLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVF-ILMISFNNLCL  123 (347)
T ss_pred             hhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhhee-eeehhccceeh
Confidence            3456555331    2478888888888877666655443332    2255555555455666666664 66666777889


Q ss_pred             cccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCC
Q 017523           87 YLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGA  166 (370)
Q Consensus        87 ~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      +|.+++.-.+=-.+.-+|+.+++++++|+|-+..      -..+..+.+.|-.+     |.+-.            +..+
T Consensus       124 ~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~l-----GvdqE------------~~~~  180 (347)
T KOG1442|consen  124 KYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGL-----GVDQE------------GSTG  180 (347)
T ss_pred             hhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehhee-----ccccc------------cccC
Confidence            9999998888888999999999999999999888      45554444444332     21100            1234


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-hhHHHHHHHHHHHHHHHHHHHHhcCCccccc---ccchhHHHHHHH
Q 017523          167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPN-HSYSSAWMCFLASLESATVALLVEKNLEAWT---LNSFLELACCLY  242 (370)
Q Consensus       167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~  242 (370)
                      .-.+.|.+++..|.++-|+..+..|+......| -+.++++.++.+.+.+.|+..+.+.-...+.   .+...-|..+..
T Consensus       181 ~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtL  260 (347)
T KOG1442|consen  181 TLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTL  260 (347)
T ss_pred             ccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHH
Confidence            567899999999999999999999976544323 5778889999999999888885543212222   223344555566


Q ss_pred             HHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchhhHH
Q 017523          243 SGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAEDLEE  317 (370)
Q Consensus       243 ~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~~~~  317 (370)
                      .|++++..-+...+=+|.++|.+-++-....-..-.++++.+++|.-+..-|-|-++|++|...+.+.|..|.++
T Consensus       261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~  335 (347)
T KOG1442|consen  261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRK  335 (347)
T ss_pred             HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHh
Confidence            666444444444566899999999999999999999999999999999999999999999999999987666544

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.25  E-value=2e-11  Score=96.91  Aligned_cols=106  Identities=22%  Similarity=0.339  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHH
Q 017523           32 VYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFI  111 (370)
Q Consensus        32 ~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~  111 (370)
                      .+|+..+.+++..+...++|.+......+.|++.+....|+++...++.++++|+++.+ +.++++.++.|+++.+++++
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            57999999998888777544322111122244677778888886699999999999999 58889999999999999999


Q ss_pred             hcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523          112 AGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus       112 ~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      ++|||++++      +++|++++++|++++...
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~~  107 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAWS  107 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhhh
Confidence            999999999      999999999999999644

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=99.23  E-value=1.9e-10  Score=101.33  Aligned_cols=280  Identities=13%  Similarity=0.090  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHHh---CCCC----chhHHHHHHHHHHHHHHHHHHHhhcccccc-----------cccchHHHHHHHHHHH
Q 017523           11 AGVALFTRVALV---QGLS----PRVFVVYRQGTAALIMAPIVYISTRKSSYR-----------LSLGLRTFGWLFVASL   72 (370)
Q Consensus        11 g~~~~~~k~~~~---~g~~----p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~   72 (370)
                      ..+.+.+|.+-+   +|.|    |+.....-++.-+++++.+.+++.|...+.           .+.+.+ ....+.-++
T Consensus        16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~-p~lfl~Pal   94 (372)
T KOG3912|consen   16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFN-PVLFLPPAL   94 (372)
T ss_pred             cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCC-cceecChHH
Confidence            345667777542   3333    555555555555788888777776533210           000111 122344677


Q ss_pred             HHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccc
Q 017523           73 IGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNE  152 (370)
Q Consensus        73 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~  152 (370)
                      +- ..+..++|.|+.+++++.-+++-...-+|+.+++.-+++.++..+      ||+|+....+|++.+...+-....+ 
T Consensus        95 ~D-i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~d~~~~~~-  166 (372)
T KOG3912|consen   95 CD-IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSLDVHLVTD-  166 (372)
T ss_pred             HH-HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeeeecccccC-
Confidence            77 667788889999999999999999999999999999999999999      9999999999998875331110000 


Q ss_pred             cCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCCc-c-cc
Q 017523          153 EFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKNL-E-AW  229 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~  229 (370)
                               +-..-++...|+++.+++-+.-|+.+++-+|..+++. +|.....|..++|.+++..++.....-+ . .+
T Consensus       167 ---------p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sf  237 (372)
T KOG3912|consen  167 ---------PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSF  237 (372)
T ss_pred             ---------CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcC
Confidence                     0122346789999999999999999999988776542 5899999999999777666555221100 0 01


Q ss_pred             cc---cchhHH------------HHHHHHHH-HHHHH-HHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhh
Q 017523          230 TL---NSFLEL------------ACCLYSGI-ALAIS-FFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMG  292 (370)
Q Consensus       230 ~~---~~~~~~------------~~~l~~gi-~~~~~-~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~  292 (370)
                      ..   ....+|            ..+...|. .+..- -+.-....|..++++=.++-.+...+-=+++.....|.++..
T Consensus       238 S~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll  317 (372)
T KOG3912|consen  238 SCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL  317 (372)
T ss_pred             cCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH
Confidence            10   000111            12222222 11111 111123456677777788888888888888888999999999


Q ss_pred             hHhHHHHHHHhhhhhe
Q 017523          293 SLIGAFAVIIGLYVVL  308 (370)
Q Consensus       293 ~~~G~~lI~~g~~l~~  308 (370)
                      |+.|..+.+.|+.++.
T Consensus       318 qilGFliLi~Gi~lY~  333 (372)
T KOG3912|consen  318 QILGFLILIMGIILYN  333 (372)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999984

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.21  E-value=2.5e-10  Score=95.56  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcc------CCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc---cc------chhH
Q 017523          172 GCFLLFGSSWFWSFWMILQVPISSS------IPNHSYSSAWMCFLASLESATVALLVEKNLEAWT---LN------SFLE  236 (370)
Q Consensus       172 G~~l~l~aa~~~a~~~v~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~------~~~~  236 (370)
                      |.+++++|.++.|++.++.|+..++      ..++..+..+....+.+.+.+..++.+.......   ..      ....
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            6789999999999999999987655      3379999999999999999999887765431111   10      2244


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          237 LACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       237 ~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      +..++..|+..+......++.+++.+|.+.++.+.+..+..++++++++||+++..+++|.++.+.|.+++.|
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence            5555666667778888889999999999999999999999999999999999999999999999999988764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=99.18  E-value=4.1e-09  Score=94.74  Aligned_cols=244  Identities=17%  Similarity=0.145  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcc
Q 017523           36 GTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGW  114 (370)
Q Consensus        36 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~  114 (370)
                      .++++++....+...+   |.++.+.+.++..++.|++ ..+.+...|.++++..++.+..+.. ++-+.+.+++.++++
T Consensus        20 t~Gali~alv~~~~~~---p~~~~~~~~~~~~~lsG~~-W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fg   95 (269)
T PF06800_consen   20 TIGALIFALVVFLFRQ---PAFSMSGTSFIVAFLSGAF-WAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFG   95 (269)
T ss_pred             HHHHHHHHHHHHHHhC---CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcC
Confidence            3444444444444333   3443323447777777887 4999999999999999999999986 666678899999999


Q ss_pred             cccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017523          115 EKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPIS  194 (370)
Q Consensus       115 E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~  194 (370)
                      |--+...  -..-.+++++.++|+.+....++.+..            .+.+.+...|....+++.+.|..|.++.|.. 
T Consensus        96 EW~~~~~--~~~G~~Al~liiiGv~lts~~~~~~~~------------~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-  160 (269)
T PF06800_consen   96 EWTTTTQ--KIIGFLALVLIIIGVILTSYQDKKSDK------------SSSKSNMKKGILALLISTIGYWIYSVIPKAF-  160 (269)
T ss_pred             CCCCcch--HHHHHHHHHHHHHHHHHhccccccccc------------cccccchhhHHHHHHHHHHHHHHHHHHHHhc-
Confidence            9886551  000123566777787776544332110            1124466789999999999999999998863 


Q ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHH
Q 017523          195 SSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCT  274 (370)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~p  274 (370)
                       +. |+....+-+ .++.++...+.....++ ..+.   ...|.. +..|+...++-.++..+.++.|....=.+.-+.+
T Consensus       161 -~~-~~~~~~lPq-aiGm~i~a~i~~~~~~~-~~~~---k~~~~n-il~G~~w~ignl~~~is~~~~G~a~af~lSQ~~v  232 (269)
T PF06800_consen  161 -HV-SGWSAFLPQ-AIGMLIGAFIFNLFSKK-PFFE---KKSWKN-ILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGV  232 (269)
T ss_pred             -CC-ChhHhHHHH-HHHHHHHHHHHhhcccc-cccc---cchHHh-hHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHH
Confidence             34 566665544 33333333332222111 1111   112222 4466667788888999999999999999999999


Q ss_pred             HHHHHHHHHHhcccchhh----hHhHHHHHHHhhhh
Q 017523          275 VIVTVLAGLFLDEEIFMG----SLIGAFAVIIGLYV  306 (370)
Q Consensus       275 v~a~~~~~~~~~e~~~~~----~~~G~~lI~~g~~l  306 (370)
                      +++.+.+.+++||+=+..    .++|.++|+.|..+
T Consensus       233 vIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  233 VISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             HHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence            999999999999987765    35688888887654

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.16  E-value=3.4e-10  Score=103.26  Aligned_cols=127  Identities=16%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSP--RVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQ   79 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p--~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (370)
                      ..+.++++|+.+.+..|...++ .++  ..+..+|+.++.+++.++.+..++..  .  .+.+++..++..|+++..+.+
T Consensus       132 ~~l~a~~~~a~~~~~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       132 LGLGSGISFALGTVLYKRLVKK-EGPELLQFTGWVLLLGALLLLPFAWFLGPNP--Q--ALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHhcCCCC--C--cchHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999998865 664  45555789999999888876644322  1  133557778888888878999


Q ss_pred             HHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523           80 NAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI  139 (370)
Q Consensus        80 ~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  139 (370)
                      .+++.++++.+++.++.+.++.|+++.++++++++|+++..      +++|..+.+.|++
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~~  260 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999      9999999988863

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.13  E-value=1.2e-09  Score=100.94  Aligned_cols=134  Identities=16%  Similarity=0.132  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHH
Q 017523          173 CFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFF  252 (370)
Q Consensus       173 ~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~  252 (370)
                      .++.++++++||.+++..|+..++.+ +.  ..+.+..+++...++..... ....|.......+..++..+++....+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYL-AQVGWSRLPATFWLLLAISAVANMVYFL   78 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhc-ccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence            46789999999999999998777653 43  35555666666655554321 1123444343444444555557888899


Q ss_pred             HHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          253 LQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       253 ~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      ++.+++++.++..++++.+++|+++.+++++++||+++..+++|.++++.|+++..+.
T Consensus        79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~  136 (281)
T TIGR03340        79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS  136 (281)
T ss_pred             HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999999887653

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=99.07  E-value=6.9e-10  Score=93.01  Aligned_cols=210  Identities=18%  Similarity=0.169  Sum_probs=152.0

Q ss_pred             hHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCC
Q 017523           76 TANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFI  155 (370)
Q Consensus        76 ~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~  155 (370)
                      .+.++.|..+++..+++.++.+..+...|+.+++++.+++|+...      |+++.++++.|++++...+          
T Consensus        64 t~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~D----------  127 (290)
T KOG4314|consen   64 TGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYAD----------  127 (290)
T ss_pred             ecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEecc----------
Confidence            678899999999999999999999999999999999999999999      9999999999999986432          


Q ss_pred             CCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccC--CchhHHHHHHHHHHHHH-H-HHHHHHhcCCcccccc
Q 017523          156 PPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSI--PNHSYSSAWMCFLASLE-S-ATVALLVEKNLEAWTL  231 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~i~-~-~~~~~~~~~~~~~~~~  231 (370)
                              ......+.|..++..++...|+|-++-|+.....  .|....+.-..++...+ . .++.+... ..++|+.
T Consensus       128 --------N~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T-~VE~~qs  198 (290)
T KOG4314|consen  128 --------NEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFT-GVEHLQS  198 (290)
T ss_pred             --------chhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHh-chHHHHH
Confidence                    2233568999999999999999999999876543  22222222222222221 1 12222221 2233442


Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          232 NSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       232 ~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      -....|..+...+.-+..--++...++....|...|+-.....+--...+.++-+-..+.....|.++|+.|..+....
T Consensus       199 FA~~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP  277 (290)
T KOG4314|consen  199 FAAAPWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIP  277 (290)
T ss_pred             HhhCCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecc
Confidence            2222355554333322223344557888889999999999999999999998777778888999999999998887653

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.05  E-value=3.7e-09  Score=98.47  Aligned_cols=138  Identities=12%  Similarity=0.161  Sum_probs=109.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccchhHHHHHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT--LNSFLELACCLYSGI  245 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gi  245 (370)
                      +...|.+++++++++|+...+..|.. .+. ++....++++.++.+...++..... +.....  ......+...+ .+.
T Consensus         5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~   80 (296)
T PRK15430          5 QTRQGVLLALAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICR-QWSYLKTLIQTPQKIFMLA-VSA   80 (296)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHcCHHHHHHHH-HHH
Confidence            56789999999999999999999875 567 5999999999999887766554332 111110  01122232223 444


Q ss_pred             -HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          246 -ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       246 -~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                       +.+..+.++++++++.++..++++.++.|+++.+++++++||+++..+++|.++.++|+.+..+
T Consensus        81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~  145 (296)
T PRK15430         81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW  145 (296)
T ss_pred             HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence             7788899999999999999999999999999999999999999999999999999999988753

>TIGR00688 rarD rarD protein

Probab=99.01  E-value=5.6e-09  Score=95.20  Aligned_cols=137  Identities=12%  Similarity=0.157  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCc---cccccc-chhHHHHHHHHHHH
Q 017523          171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNL---EAWTLN-SFLELACCLYSGIA  246 (370)
Q Consensus       171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~~gi~  246 (370)
                      .|.++.++++++|+...+..|.. .+. ++....+++++++++.+.+......+..   ..+... ....+......|+.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            47889999999999999999984 457 6999999999999887666554332210   111111 11223445556666


Q ss_pred             HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      .++.+.++++++++.++..++.+.++.|+++.+++++++||+++..+++|.++.++|+.+...
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~  142 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV  142 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence            778899999999999999999999999999999999999999999999999999999887643

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.98  E-value=8.7e-09  Score=95.84  Aligned_cols=131  Identities=14%  Similarity=0.061  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      +.+.++++|+.+.+..|...++ .++..... -.+++.+++.|+......  ...  .+...+...+..|+++..+.+.+
T Consensus       152 l~l~aa~~~a~~~v~~r~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~--~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        152 LALGAGACWAIYILSGQRAGAE-HGPATVAI-GSLIAALIFVPIGALQAG--EAL--WHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-CCchHHHH-HHHHHHHHHHHHHHHccC--ccc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence            4678899999999999998765 78877654 456667777777655332  111  12222545677888888899999


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      |++++++.+++.++.+.++.|+++.++++++++|+++..      +++|..+.++|+++....
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~~  282 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTLT  282 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999      999999999999988654

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.95  E-value=5.2e-09  Score=89.44  Aligned_cols=260  Identities=11%  Similarity=0.072  Sum_probs=174.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHH
Q 017523           28 RVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFV  107 (370)
Q Consensus        28 ~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~l  107 (370)
                      +.+.+.+.+...+-++.+-..+--+.|      .++....+..+++- ....+.--.++||.++..-++..+++-+.++.
T Consensus        38 flll~vQSlvcvv~l~iLk~l~~~~fR------~t~aK~WfpiSfLL-v~MIyt~SKsLqyL~vpiYTiFKNltII~iAy  110 (309)
T COG5070          38 FLLLAVQSLVCVVGLLILKFLRLVEFR------LTKAKKWFPISFLL-VVMIYTSSKSLQYLAVPIYTIFKNLTIILIAY  110 (309)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHhhee------hhhhhhhcCHHHHH-HHHHHhcccceeeeeeeHHHHhccceeehhHh
Confidence            445566666655544443322211111      12233334455554 56667778899999999999999999999999


Q ss_pred             HHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHH
Q 017523          108 MAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWM  187 (370)
Q Consensus       108 la~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~  187 (370)
                      .-..+++.|++--      ....-++.+..-++-...+.+..             .........|.+++...++.-+.|.
T Consensus       111 gEvl~Fgg~vtsl------~l~SFilMvlSS~va~w~D~q~~-------------~~~~~~lN~GY~Wm~~NclssaafV  171 (309)
T COG5070         111 GEVLFFGGRVTSL------ELLSFILMVLSSVVATWGDQQAS-------------AFKAQILNPGYLWMFTNCLSSAAFV  171 (309)
T ss_pred             hHHHHhcCccchh------hHHHHHHHHHHHHHhccchhhHH-------------HHHhcccCCceEEEehhhHhHHHHH
Confidence            9999998888655      34333333332222211111100             0111234567788899999999999


Q ss_pred             HHHHHhhc--cCCchhHHHHHHHHHHHHHHHHHHHHhcCCccc-cc-ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 017523          188 ILQVPISS--SIPNHSYSSAWMCFLASLESATVALLVEKNLEA-WT-LNSFLELACCLYSGIALAISFFLQAWCISERGP  263 (370)
Q Consensus       188 v~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~  263 (370)
                      ...|+..+  ++ .....++|.++.+..++..+.++++...+. .. ..+...+.++...|++++.--++-.|+++.++.
T Consensus       172 L~mrkri~ltNf-~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSS  250 (309)
T COG5070         172 LIMRKRIKLTNF-KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSS  250 (309)
T ss_pred             HHHHHhhccccc-chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhh
Confidence            99887543  23 356778999999999999988877542111 11 112234566777888777677788999999999


Q ss_pred             eeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          264 LFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       264 ~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      ++-++.+.+.-.-..+-|.++|+|+.+..++....+=..+-.++...|.++
T Consensus       251 TtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k  301 (309)
T COG5070         251 TTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK  301 (309)
T ss_pred             hHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988887666555565555443

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=98.95  E-value=3.2e-08  Score=87.13  Aligned_cols=227  Identities=11%  Similarity=0.106  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      +..+..++.+. ...+.+...++.|.+=-.-.+...+--+-+.+.+.++-+.|..+.      ...+..+...|.++.++
T Consensus       106 ~rtY~~la~~t-~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~------d~~aA~lm~lGli~FTL  178 (367)
T KOG1582|consen  106 WRTYVILAFLT-VGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVH------DYIAAMLMSLGLIWFTL  178 (367)
T ss_pred             hhHhhhhHhhh-hhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHH------HHHHHHHHHHHHHhhhh
Confidence            44455556664 667778888888875444445555555556677888888888777      89999999999999987


Q ss_pred             hcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHh
Q 017523          144 LKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLV  222 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~  222 (370)
                      .+..                -.+..+..|..+.-.|-++-|.---+|++..+.+| ....+.++...+|.+..+..+...
T Consensus       179 ADs~----------------~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlT  242 (367)
T KOG1582|consen  179 ADSQ----------------TSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLT  242 (367)
T ss_pred             cccc----------------cCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhc
Confidence            7654                23446788998888888899998889998887765 245666777888888777766656


Q ss_pred             cCCcccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHH
Q 017523          223 EKNLEAWTL---NSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFA  299 (370)
Q Consensus       223 ~~~~~~~~~---~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~l  299 (370)
                      +.-.+.|..   .+........+....+.++...-..-++..|+..+.+.....-.+++++++++|..++|....-|..+
T Consensus       243 ge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gll  322 (367)
T KOG1582|consen  243 GELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLL  322 (367)
T ss_pred             ccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHH
Confidence            554455542   12223333344444566666666677889999999999999999999999999999999999999999


Q ss_pred             HHHhhhhheeccch
Q 017523          300 VIIGLYVVLWGKAE  313 (370)
Q Consensus       300 I~~g~~l~~~~~~~  313 (370)
                      |+.|+++-.+.|+.
T Consensus       323 v~lgI~Ln~ysk~n  336 (367)
T KOG1582|consen  323 VVLGIYLNMYSKRN  336 (367)
T ss_pred             HHHHHHhhcccCCC
Confidence            99999999887743

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.90  E-value=1.4e-08  Score=94.37  Aligned_cols=132  Identities=14%  Similarity=0.049  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      ..++++++|+.+.+..|...+.  ++....+++..++.+.+.++........  ....+.+++..+...|+++..+.+.+
T Consensus       154 ~~l~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        154 LILIASASWAFGSVWSSRLPLP--VGMMAGAAEMLAAGVVLLIASLLSGERL--TALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHHHHHHHHHHcCCcc--cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            3567889999999999996432  4566778888888888888765433211  11122355778888899887899999


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      |+.++++.+++.++.+.++.|+++.++++++++|++++.      +++|.++.+.|++++..
T Consensus       230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999      99999999999988854

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.87  E-value=2.9e-08  Score=94.45  Aligned_cols=135  Identities=7%  Similarity=0.014  Sum_probs=101.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHHHHHHHHHhhccccc--ccccchHHHHHHHHHHHHHHhHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSP-RVFVVYRQGTAALIMAPIVYISTRKSSY--RLSLGLRTFGWLFVASLIGVTAN   78 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p-~~~~~~R~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~   78 (370)
                      +++.++++|+.+.++.|..... .++ ...+++...++.+.+.+......+...+  ....... ...++..|+. ..+.
T Consensus       193 l~l~aa~~wa~~~il~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~-t~la  269 (358)
T PLN00411        193 LLTIQGIFVSVSFILQAHIMSE-YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAII-TSVY  269 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-cCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHH-HHHH
Confidence            3567889999999999998776 555 4556676776666665555554432111  1111221 2234445554 3678


Q ss_pred             HHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523           79 QNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK  145 (370)
Q Consensus        79 ~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  145 (370)
                      +.++++++++.+++.++...++.|+++.++++++++|++++.      +++|.++.+.|+.+....+
T Consensus       270 y~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~~~  330 (358)
T PLN00411        270 YVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMWGK  330 (358)
T ss_pred             HHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHhhh
Confidence            889999999999999999999999999999999999999999      9999999999999986543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=98.85  E-value=7.1e-07  Score=83.55  Aligned_cols=294  Identities=13%  Similarity=-0.009  Sum_probs=174.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHH--HHHhhcccccccc-cchHHHHHHHHHHHHHHh
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLS--PRVFVVYRQGTAALIMAPI--VYISTRKSSYRLS-LGLRTFGWLFVASLIGVT   76 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~--p~~~~~~R~~~~~l~l~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~   76 (370)
                      ..+++.++||..++-.|.. ++ .+  .++.+  -.+++.++ .|+  ..+..+.....+. .+.+.+...++.|++= .
T Consensus        11 ~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v--~gi~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~W-~   84 (345)
T PRK13499         11 WHLIGGASSGSFYAPFKKV-KK-WSWETMWSV--GGIFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGALW-G   84 (345)
T ss_pred             HHHHHHHHhhccccccccc-CC-CchhHHHHH--HHHHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHHH-H
Confidence            3567889999999999993 33 33  22221  11122111 121  1111111111111 1224466777777774 9


Q ss_pred             HHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccc-cccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523           77 ANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVH-NRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF  154 (370)
Q Consensus        77 ~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~-~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  154 (370)
                      ..+..++.++++..++.+..+.. ++-++..++..++++|=.+ ..+..+..-.+|+++.++|+++........-     
T Consensus        85 iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~-----  159 (345)
T PRK13499         85 IGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE-----  159 (345)
T ss_pred             hhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc-----
Confidence            99999999999999999998886 7888899999999886430 0111233467788888999988875211100     


Q ss_pred             CCCCcccccCCCCchHHHHHHHHHHHHHHHHHH-------HHHHHhh-ccCCchhHHHHHHHH---HHHHHHHHHHHH--
Q 017523          155 IPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWM-------ILQVPIS-SSIPNHSYSSAWMCF---LASLESATVALL--  221 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-------v~~~~~~-~~~~~~~~~~~~~~~---~~~i~~~~~~~~--  221 (370)
                       +.. .++...+.+...|.++++++.+.++.|+       ...+... .+. ++.....-+..   .+..+...+-..  
T Consensus       160 -~~~-~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~-~~~~~~lp~~~~~~~G~~~~n~~~~~~~  236 (345)
T PRK13499        160 -RKM-GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGV-DPLYAALPSYVVIMGGGAITNLGFCFIR  236 (345)
T ss_pred             -ccc-ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             000 0000234577899999999999999999       4444321 122 33333333332   344333221111  


Q ss_pred             --hcCCccccccc--c----hhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeec---ch-hhHHHHHHHHHHHHhcccc
Q 017523          222 --VEKNLEAWTLN--S----FLELACCLYSGIALAISFFLQAWCISERGPLFCAM---FN-PLCTVIVTVLAGLFLDEEI  289 (370)
Q Consensus       222 --~~~~~~~~~~~--~----~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~---~~-~l~pv~a~~~~~~~~~e~~  289 (370)
                        ..++.......  +    ..........|+...++.++|..+-++.+......   +. .+..+++.+.+. ++||+=
T Consensus       237 ~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K  315 (345)
T PRK13499        237 LAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWK  315 (345)
T ss_pred             HhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhcc
Confidence              11221111111  1    22333345566677888888888888886665544   44 777799999999 599976


Q ss_pred             h------hhhHhHHHHHHHhhhhheec
Q 017523          290 F------MGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       290 ~------~~~~~G~~lI~~g~~l~~~~  310 (370)
                      +      ...++|.+++++|..+...+
T Consensus       316 ~a~~k~~~~l~~G~vliI~g~~lig~~  342 (345)
T PRK13499        316 GASRRPVRVLSLGCVVIILAANIVGLG  342 (345)
T ss_pred             CCCccchhHHHHHHHHHHHHHHHHhhc
Confidence            6      45688999999998887554

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.84  E-value=4.6e-08  Score=78.91  Aligned_cols=121  Identities=14%  Similarity=0.105  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHH
Q 017523          171 LGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAI  249 (370)
Q Consensus       171 ~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~  249 (370)
                      .|.++.+.+.++-+..+++.|+-.++.+ ....... .    . ......   .+           ....++.|+ +.++
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g-~~~~~~~-~----~-~~~~~~---~~-----------p~~~i~lgl~~~~l   60 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLP-LLSHAWD-F----I-AALLAF---GL-----------ALRAVLLGLAGYAL   60 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCC-CccchhH-H----H-HHHHHH---hc-----------cHHHHHHHHHHHHH
Confidence            3678889999999999999998877764 2221111 0    0 000000   00           112466788 9999


Q ss_pred             HHHHHHHHHhccCceeeecchhhHHHHHHHHHHH--HhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          250 SFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGL--FLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       250 ~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~--~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      ++.+|.+++++.+.+.+..+..+.+++..+.++.  +|||++++.+++|.++|++|++++.+.++
T Consensus        61 a~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~  125 (129)
T PRK02971         61 SMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT  125 (129)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence            9999999999999999999999998888888885  89999999999999999999999876443

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.80  E-value=3.9e-08  Score=91.54  Aligned_cols=128  Identities=14%  Similarity=0.111  Sum_probs=98.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      +++.++++|+.+.++.|...++ .++....+   ..+.+.+.+...... . . ....+.+.+..++..|+. ..+.+.+
T Consensus       160 ~~l~aa~~~A~~~v~~k~~~~~-~~~~~~~~---~~~~~~l~~~~~~~~-~-~-~~~~~~~~~~~l~~~~~~-t~~~~~l  231 (295)
T PRK11689        160 LAFIGAFIWAAYCNVTRKYARG-KNGITLFF---ILTALALWIKYFLSP-Q-P-AMVFSLPAIIKLLLAAAA-MGFGYAA  231 (295)
T ss_pred             HHHHHHHHHHHHHHHHhhccCC-CCchhHHH---HHHHHHHHHHHHHhc-C-c-cccCCHHHHHHHHHHHHH-HHHHHHH
Confidence            4678899999999999998654 77765532   233334433333322 1 1 122333447677777754 4889999


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      |+.++++.+++.++.+.++.|++..++++++++|+++..      +++|.++.+.|+++...
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            999999999999999999999999999999999999999      99999999999988753

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.73  E-value=1.1e-07  Score=88.23  Aligned_cols=230  Identities=13%  Similarity=0.126  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523           66 WLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK  145 (370)
Q Consensus        66 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  145 (370)
                      +.++.|++.+.++..+.+.|+.+.|++..+.+....-++..+++..+++||++++      .+.|+.+++.|..++....
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~~~  124 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVIFA  124 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEEeC
Confidence            4566677777888899999999999999999999999999999999999999999      9999999999998876543


Q ss_pred             CCccccccCCCCCccc-ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHH-------HH
Q 017523          146 GPKLVNEEFIPPKSLI-FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLES-------AT  217 (370)
Q Consensus       146 ~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~-------~~  217 (370)
                      +.+.+..    +.+.. ..-.+..+..-..+. .. +...+.....+|..++  +.........++++...       ..
T Consensus       125 ~~~~~~~----t~~~l~~~~~~~~fl~y~~~~-~~-~~~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~  196 (300)
T PF05653_consen  125 PKEEPIH----TLDELIALLSQPGFLVYFILV-LV-LILILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISIL  196 (300)
T ss_pred             CCCCCcC----CHHHHHHHhcCcceehhHHHH-HH-HHHHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHH
Confidence            2211000    00000 000011111111111 11 1122222222222222  11111111111111110       01


Q ss_pred             HHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHH-HHHHHHHHHhccc--chh---
Q 017523          218 VALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTV-IVTVLAGLFLDEE--IFM---  291 (370)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv-~a~~~~~~~~~e~--~~~---  291 (370)
                      +.....++   ....++..|..++...++...-....++++++.+++.+..+.+..=. .+++-+.++++|.  ++.   
T Consensus       197 i~~~~~g~---~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~  273 (300)
T PF05653_consen  197 IKLTFSGD---NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQI  273 (300)
T ss_pred             HHHHhcCc---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHH
Confidence            11111111   12222333444443433556666667789999999999888876544 4555566677864  333   


Q ss_pred             -hhHhHHHHHHHhhhhheeccc
Q 017523          292 -GSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       292 -~~~~G~~lI~~g~~l~~~~~~  312 (370)
                       ....|..+++.|+++....|.
T Consensus       274 ~~~~~G~~~ii~GV~lL~~~~~  295 (300)
T PF05653_consen  274 IGFLCGFLIIIIGVFLLSSSKD  295 (300)
T ss_pred             HHHHHHHHHHHHhhheeeccCc
Confidence             345688889999998876543

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.72  E-value=5.9e-08  Score=76.88  Aligned_cols=106  Identities=13%  Similarity=0.293  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH-HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHH
Q 017523          206 WMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI-ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLF  284 (370)
Q Consensus       206 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi-~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~  284 (370)
                      +...++.+..........+..+.+.......+...+..|+ +...++.++.+++++.++ .++.+..+.|+++.++++++
T Consensus         3 ~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~   81 (113)
T PF13536_consen    3 FRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF   81 (113)
T ss_pred             HHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555544322111122222233444555566 556899999999999995 88899999999999999999


Q ss_pred             hcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          285 LDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       285 ~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      ++|+++...++|.+++.+|+.+..+.+.
T Consensus        82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~  109 (113)
T PF13536_consen   82 FKERLSPRRWLAILLILIGVILIAWSDL  109 (113)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999988553

>TIGR00803 nst UDP-galactose transporter

Probab=98.71  E-value=4.4e-08  Score=87.33  Aligned_cols=204  Identities=12%  Similarity=0.051  Sum_probs=126.7

Q ss_pred             HHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccc---------cccCCCCCccccc
Q 017523           93 VASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLV---------NEEFIPPKSLIFS  163 (370)
Q Consensus        93 ~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~---------~~~~~~~~~~~~~  163 (370)
                      ......+..++++++..+.+.++|....      |++++.+...|++...+.+.+...         ..+.++  +.+..
T Consensus         6 a~~~~~s~~l~~v~l~~~~~~~~~~~~~------~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~--~~~~~   77 (222)
T TIGR00803         6 IHIIFKQNNLVLIALGNLLAAGKQVTQL------KILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQ--SSAKT   77 (222)
T ss_pred             chHHHHhcchHHHHHhcccccceeeehH------HHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCC--CCccc
Confidence            3456677889999999999999999877      999999988888764333221100         000000  00000


Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCch-hHHHHHHHHHHHHHHHHHHHHhcCCc-cccc--ccchhHHHH
Q 017523          164 SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNH-SYSSAWMCFLASLESATVALLVEKNL-EAWT--LNSFLELAC  239 (370)
Q Consensus       164 ~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~--~~~~~~~~~  239 (370)
                      ......+.|....+.+.++-+...+.+++..++.... ........+++.+...........+. ..+.  ...+...+.
T Consensus        78 ~~~g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (222)
T TIGR00803        78 LMFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVWI  157 (222)
T ss_pred             cccccHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHHH
Confidence            1123557788888888888888888888876654211 11122222222222111111111110 1111  111111112


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523          240 CLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV  307 (370)
Q Consensus       240 ~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~  307 (370)
                         ..+...+...+..+.+|+.++...++...++++++.++++++|||+++..+++|+.+++.|++++
T Consensus       158 ---~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       158 ---VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             ---HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence               22234556667889999999999999999999999999999999999999999999999997753

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.67  E-value=2.9e-07  Score=85.86  Aligned_cols=135  Identities=13%  Similarity=0.138  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHHHHHHHHHHhhcccc---cccccchHHHHHHHHHHHHHHh
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLS--PRVFVVYRQGTAALIMAPIVYISTRKSS---YRLSLGLRTFGWLFVASLIGVT   76 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~--p~~~~~~R~~~~~l~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~   76 (370)
                      ..+.++++|+.+.++.|...++.-+  .....++-.+++.+.+.......+....   +....+.+++..++..|++...
T Consensus       147 l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~  226 (299)
T PRK11453        147 LTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATI  226 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence            4678899999999999997654212  2233344444444333333333222110   0012233558888889999989


Q ss_pred             HHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           77 ANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        77 ~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      +.+.+++.++++.+++.++.+..+.|++..++++++++|+++..      +++|..+.++|+++..
T Consensus       227 ~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        227 VGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999      9999999999998764

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=98.67  E-value=3.6e-07  Score=80.86  Aligned_cols=218  Identities=12%  Similarity=0.094  Sum_probs=147.0

Q ss_pred             hHHHHHHHhhcccc-chhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC
Q 017523           76 TANQNAYFEGLYLS-SSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF  154 (370)
Q Consensus        76 ~~~~~~~~~al~~~-~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~  154 (370)
                      ...+.+-++++++- +.-.=.++-.-.++.++++++++++.|.+.+      |...+++.-+|+++.++.+.++... ..
T Consensus        75 F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~-~~  147 (330)
T KOG1583|consen   75 FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRS-KL  147 (330)
T ss_pred             eeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehh------hhhhHHhhhhhheeEEeecCcchhh-hh
Confidence            33445556677663 3344445556789999999999999999999      9999999999999988765553322 00


Q ss_pred             CCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHHHHHHhcCC-cccccc-
Q 017523          155 IPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIP-NHSYSSAWMCFLASLESATVALLVEKN-LEAWTL-  231 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~-  231 (370)
                      ..-++++.......|..|..+...+-+.-|...+.++..-+++. ++-..+++.=..+...+..    ..++ .++|.. 
T Consensus       148 ~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf----~~~div~~~~~~  223 (330)
T KOG1583|consen  148 SGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLF----MGDDIVSHWRLA  223 (330)
T ss_pred             cccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHH----hcchHHHHHHHH
Confidence            01112222334456788998888888888888888876655442 4556666666555543332    2221 111211 


Q ss_pred             -------------cchhHHHHHHHHHHHHHHHHHHHHHH----HhccCceeeecchhhHHHHHHHHHHHHhcccchhhhH
Q 017523          232 -------------NSFLELACCLYSGIALAISFFLQAWC----ISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSL  294 (370)
Q Consensus       232 -------------~~~~~~~~~l~~gi~~~~~~~~~~~~----l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~  294 (370)
                                   .-+..|+.++...    +.++.-.++    -.+.++.++++...+.-.+..+++.+.|.+++++..|
T Consensus       224 ~~se~~~~p~~g~~vP~~~~yLl~n~----L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~  299 (330)
T KOG1583|consen  224 FKSESYLIPLLGFKVPSMWVYLLFNV----LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHW  299 (330)
T ss_pred             hcCcceeccccCccccHHHHHHHHHH----HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHH
Confidence                         1123455544333    333333333    4567888999999999999999999999999999999


Q ss_pred             hHHHHHHHhhhhhe
Q 017523          295 IGAFAVIIGLYVVL  308 (370)
Q Consensus       295 ~G~~lI~~g~~l~~  308 (370)
                      +|++++..|..++.
T Consensus       300 lGa~lVF~Gt~~fa  313 (330)
T KOG1583|consen  300 LGAALVFFGTLLFA  313 (330)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988874

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.61  E-value=1.8e-07  Score=87.48  Aligned_cols=137  Identities=14%  Similarity=0.156  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhcccc-c-cc-c----cchHHHHH-HHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQ-GLSPRVFVVYRQGTAALIMAPIVYISTRKSS-Y-RL-S----LGLRTFGW-LFVASL   72 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~-g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~-~-~~-~----~~~~~~~~-~~~~g~   72 (370)
                      ..++++++|+...+..|...++ +.||..+.++.+..+++.++|+....+.... + .. .    ......+. .+..+.
T Consensus       149 ~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (302)
T TIGR00817       149 SAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAM  228 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHH
Confidence            4677899999999999998762 3899999999999999999998776442111 1 00 0    00000122 223333


Q ss_pred             HHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523           73 IGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus        73 ~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      ......+.+++.++++++++.+++...+.|++++++++++++|+++..      +++|..+.+.|+.+....
T Consensus       229 ~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       229 GFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHHH
Confidence            232344467788999999999999999999999999999999999999      999999999999987644

specificities overlap.

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.56  E-value=9.8e-07  Score=73.65  Aligned_cols=132  Identities=15%  Similarity=0.192  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHHHHHHHHHHhhccccc----cccc-----chHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQ------GLSPRVFVVYRQGTAALIMAPIVYISTRKSSY----RLSL-----GLRTFGW   66 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~------g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~----~~~~-----~~~~~~~   66 (370)
                      ..+.+.++.+...++.|..+++      ..++..+..+-...+++++.|.++..++....    ....     ..+.+..
T Consensus         4 ~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T PF03151_consen    4 LALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFL   83 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHH
Confidence            4677889999999999998876      69999999999999999999998887664411    0000     1133556


Q ss_pred             HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHH
Q 017523           67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAIT  140 (370)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  140 (370)
                      ++..|++. ...+...+..++++++-..+++...-.+++.++++++++|+++..      +++|+.++++|+++
T Consensus        84 ~~~~~~~~-~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   84 LILSGLLA-FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHH-HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            66677776 888899999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.53  E-value=3e-06  Score=80.75  Aligned_cols=139  Identities=12%  Similarity=0.046  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHH
Q 017523          170 LLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAI  249 (370)
Q Consensus       170 ~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~  249 (370)
                      +.-..+++.-=.+-..+++..|...+..|-|++++.++++++.+.+.++.....++.+... .....+..++-.|++...
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~llp~gl~~~~  126 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIK-SLKLFLKNFLPQGLCHLF  126 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence            3333444444444455677889888888559999999999998876544322111111111 122356667777775555


Q ss_pred             HHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          250 SFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       250 ~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      .+.....+++..+++.++++..++|++++++++++++|+++..+++|.+++++|+.+...
T Consensus       127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~  186 (350)
T PTZ00343        127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASV  186 (350)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheec
Confidence            677778999999999999999999999999999999999999999999999999998764

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.46  E-value=1.1e-06  Score=69.16  Aligned_cols=70  Identities=19%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      ....+++++.+..+++..+++..|.+.+..+.++.++++.++++++++||++++      |++|+.+.++|++++.
T Consensus        39 ~~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         39 WLGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            334454666889999999999999999999999999999999999999999999      9999999999999884

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.40  E-value=2e-06  Score=67.70  Aligned_cols=63  Identities=17%  Similarity=0.099  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~  308 (370)
                      +.++++.++..++++.+...+-.+..+.++++.++++++|||+++..+++|.++|++|+.+.-
T Consensus        46 ~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         46 CLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            677899999999999999999999999999999999999999999999999999999988764

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=98.38  E-value=4.2e-06  Score=75.15  Aligned_cols=142  Identities=13%  Similarity=0.159  Sum_probs=115.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc-ccchhHHHHHHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT-LNSFLELACCLYSGIA  246 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~gi~  246 (370)
                      ....|.++++.|-+.|+..-.+.|.+. .. ++..+..+..+.+.+....+.....+...-+. ...+..+......++-
T Consensus         4 ~~~~Gil~~l~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~l   81 (293)
T COG2962           4 DSRKGILLALLAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALL   81 (293)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHH
Confidence            345799999999999999999988754 45 48889999999998888777665543322222 2334456666666666


Q ss_pred             HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      ...-+.+|.|+..+.....+|+-.++.|.+.+++|.++++|+++..|++..++..+|+....|..
T Consensus        82 i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~  146 (293)
T COG2962          82 IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLL  146 (293)
T ss_pred             HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            77789999999999999999999999999999999999999999999999999999988876643

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.32  E-value=6.9e-06  Score=75.66  Aligned_cols=128  Identities=14%  Similarity=0.183  Sum_probs=99.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVV-YRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQN   80 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~-~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~   80 (370)
                      ..+.+.++|+.+.+..|... + .++..... +.......+..+..  .....   .....+++......|+++....+.
T Consensus       158 ~~l~a~~~~a~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~g~~~~~i~~~  230 (292)
T COG0697         158 LALAAALLWALYTALVKRLS-R-LGPVTLALLLQLLLALLLLLLFF--LSGFG---APILSRAWLLLLYLGVFSTGLAYL  230 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHHHHHHH--hcccc---ccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45788899999999999876 4 67777776 44332222222222  11111   222335588888899998667999


Q ss_pred             HHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           81 AYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        81 ~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      +++.++++.+++.++.+..+.|++..++++++++|+++.+      +++|..+.+.|+.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         231 LWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999      9999999999998874

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=3.8e-06  Score=76.30  Aligned_cols=228  Identities=14%  Similarity=0.182  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523           66 WLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK  145 (370)
Q Consensus        66 ~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  145 (370)
                      +.+..|.+.+.++...-|.|..+-|++-.+.+..++-+..++++..+++||+++.      ..+|..++++|-.+++...
T Consensus        65 ~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~ha  138 (335)
T KOG2922|consen   65 PLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVIHA  138 (335)
T ss_pred             HHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEEec
Confidence            5567788888999999999999999999999999999999999999999999999      9999999999998887543


Q ss_pred             CCccccccCCCCC-ccccc-CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHH-------HH
Q 017523          146 GPKLVNEEFIPPK-SLIFS-SGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLE-------SA  216 (370)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~~-~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~-------~~  216 (370)
                      +.+-     +..+ ..... -.+...+.-..+.++. ++  +-....|..-... +.+.......+.|+..       ..
T Consensus       139 P~e~-----~i~t~~el~~~~~~~~Fliy~~~iil~-~~--il~~~~~p~~g~t-nilvyi~i~s~iGS~tV~svKalg~  209 (335)
T KOG2922|consen  139 PKEQ-----EIESVEEVWELATEPGFLVYVIIIILI-VL--ILIFFYAPRYGQT-NILVYIGICSLIGSLTVMSVKALGI  209 (335)
T ss_pred             Cccc-----ccccHHHHHHHhcCccHHHHHHHHHHH-HH--HHheeeccccccc-ceeehhhHhhhhcceeeeeHHHHHH
Confidence            3211     0000 00000 0111222222111111 11  1111122110111 2333333333333221       11


Q ss_pred             HHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecchhh-HHHHHHHHHHHHhcccch-----
Q 017523          217 TVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCISERGPLFCAMFNPL-CTVIVTVLAGLFLDEEIF-----  290 (370)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l-~pv~a~~~~~~~~~e~~~-----  290 (370)
                      .+-....++   .+...+..|..++....|...-..-..+|++..++..++.+.+. -..++++-+.++|+|.-.     
T Consensus       210 aiklt~~g~---~ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~  286 (335)
T KOG2922|consen  210 AIKLTFSGN---NQLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALD  286 (335)
T ss_pred             HHHHHhcCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence            111122222   12222234555444444555555556799999999999888774 445566668888888542     


Q ss_pred             -hhhHhHHHHHHHhhhhheecc
Q 017523          291 -MGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       291 -~~~~~G~~lI~~g~~l~~~~~  311 (370)
                       ...+.|...|+.|+.+....|
T Consensus       287 i~~~~~Gf~ti~~G~flL~~~k  308 (335)
T KOG2922|consen  287 IAGELCGFVTIFLGIFLLHRTK  308 (335)
T ss_pred             HHHHHHhHHHhhheeeEeeeec
Confidence             235678999999998885433

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.24  E-value=1.3e-05  Score=74.48  Aligned_cols=123  Identities=9%  Similarity=0.020  Sum_probs=94.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHH---HHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQ---GTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQ   79 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~---~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~   79 (370)
                      .+++.++++.+.+..|..  + .||...++...   .++..++.+..  + + .+|.   ..+..+..++.|++ ..+.+
T Consensus       157 ~l~sg~~y~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~~~~~~~~~--~-~-~~~~---~~~~~~~~~~~Gi~-~~ia~  225 (290)
T TIGR00776       157 LLMSTIGYLVYVVVAKAF--G-VDGLSVLLPQAIGMVIGGIIFNLGH--I-L-AKPL---KKYAILLNILPGLM-WGIGN  225 (290)
T ss_pred             HHHHHHHHHHHHHHHHHc--C-CCcceehhHHHHHHHHHHHHHHHHH--h-c-ccch---HHHHHHHHHHHHHH-HHHHH
Confidence            467789999999999975  3 78888854443   34444333322  1 1 1221   12335566668888 49999


Q ss_pred             HHHHhhcc-ccchhHHHHhhhhHHHHHHHHHHHhccccccccccccccee----eehhhhhhhhHHHh
Q 017523           80 NAYFEGLY-LSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKI----LGTIFCVGGAITMA  142 (370)
Q Consensus        80 ~~~~~al~-~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~----~g~~l~~~Gv~ll~  142 (370)
                      .+|+.+.+ +.+++.++.+.+..|+...++++++++|+.+++      ++    +|.++.+.|+.++.
T Consensus       226 ~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       226 FFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            99999999 999999999999999999999999999999999      99    99999999998875

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=98.15  E-value=4.7e-07  Score=78.88  Aligned_cols=274  Identities=15%  Similarity=0.102  Sum_probs=174.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY   82 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (370)
                      .++-++.||....++...   |-+|.+-+.- ..++++++....++..+   |..+...  +..-++.|.+ ..++|...
T Consensus         7 aL~P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~~~---p~~T~~~--~iv~~isG~~-Ws~GQ~~Q   76 (288)
T COG4975           7 ALLPALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLFVS---PELTLTI--FIVGFISGAF-WSFGQANQ   76 (288)
T ss_pred             HHHHHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHheeec---Cccchhh--HHHHHHhhhH-hhhhhhhh
Confidence            456788999888776553   3456555543 34455555444444322   3333322  5555566666 59999999


Q ss_pred             HhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccCCCCCccc
Q 017523           83 FEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEFIPPKSLI  161 (370)
Q Consensus        83 ~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~~~~~~~~  161 (370)
                      +.|+++..++.+..+.. ++-+-+.+++.+.++|-.+..         -.++++..++++...  -...  +. .++++.
T Consensus        77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~---------~~IlG~iAliliviG--~~lT--s~-~~~~nk  142 (288)
T COG4975          77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT---------QIILGFIALILIVIG--IYLT--SK-QDRNNK  142 (288)
T ss_pred             hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch---------hHHHHHHHHHHHHHh--heEe--ee-eccccc
Confidence            99999999999999987 666778899999999977544         334444433333211  0000  00 000111


Q ss_pred             ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHH
Q 017523          162 FSSGADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCL  241 (370)
Q Consensus       162 ~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  241 (370)
                      ..++.++...|....+.|.+.|-.|.++.+...-   |.++... ...++.++..+..-....     +.......+.-.
T Consensus       143 ~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f~v---~g~saiL-PqAiGMv~~ali~~~~~~-----~~~~~K~t~~ni  213 (288)
T COG4975         143 EEENPSNLKKGIVILLISTLGYVGYVVLFQLFDV---DGLSAIL-PQAIGMVIGALILGFFKM-----EKRFNKYTWLNI  213 (288)
T ss_pred             cccChHhhhhheeeeeeeccceeeeEeeeccccc---cchhhhh-HHHHHHHHHHHHHhhccc-----ccchHHHHHHHH
Confidence            1345556789999999999999999999987642   2333322 223333333333322221     112222233334


Q ss_pred             HHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhh----HhHHHHHHHhhhhhee
Q 017523          242 YSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGS----LIGAFAVIIGLYVVLW  309 (370)
Q Consensus       242 ~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~----~~G~~lI~~g~~l~~~  309 (370)
                      .-|+..+++-..+..+-++.|..+.=.++-+..+++.+-+.++++|+=|..+    ++|.+++++|..+.-.
T Consensus       214 i~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~  285 (288)
T COG4975         214 IPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI  285 (288)
T ss_pred             hhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence            5666677788888888889998888888889999999999999999888775    4688888888666543

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.03  E-value=3e-05  Score=72.76  Aligned_cols=135  Identities=14%  Similarity=-0.011  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      +++.+++++|.++++-+...++ .|+..+..+--+++.++..+.....+++......++.+....++..+++ .+..+.+
T Consensus       172 l~l~~a~lya~~nV~~E~~v~~-~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~-lf~~y~l  249 (334)
T PF06027_consen  172 LALLGAILYAVSNVLEEKLVKK-APRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALC-LFLFYSL  249 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHH-HHHHHHH
Confidence            5788999999999999998877 8888888888888888888887777776665555555545444444444 3666667


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      .-..+++++++...+=..++.++..++..+++++++++.      .++|.++.++|.++....
T Consensus       250 ~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~~  306 (334)
T PF06027_consen  250 VPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNLA  306 (334)
T ss_pred             HHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEcc
Confidence            778899999988887778899999999999999999999      899999999999887543

Some of the sequences in this family are annotated as putative membrane proteins.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.03  E-value=5.7e-05  Score=61.01  Aligned_cols=70  Identities=17%  Similarity=0.170  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHH--hcccccccccccccceeeehhhhhhhhHHHh
Q 017523           67 LFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFI--AGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        67 ~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~--~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      .+..|+....+.+.++..+++..+++.+..+....+.++.+.++.  +++|+++++      |++|+.+.++|++++.
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            466777777899999999999999999999999999888888874  899999999      9999999999999985

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.91  E-value=7e-05  Score=65.86  Aligned_cols=128  Identities=14%  Similarity=0.026  Sum_probs=106.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY   82 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (370)
                      .+.+..||+.+-+..|.+.+. .|.-.-+.+-+++++++.+|+..-.....  -++++.  +..-+..|+++..+.+.+-
T Consensus       153 Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~ag~~--l~~p~l--l~laLgvavlSSalPYsLE  227 (292)
T COG5006         153 ALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQAGPA--LFSPSL--LPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             HHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhcchh--hcChHH--HHHHHHHHHHhcccchHHH
Confidence            456789999999999998765 67777788889999999999976433211  222333  5666778999999999999


Q ss_pred             HhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           83 FEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        83 ~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      ..+++..|...-.++.++.|.+.++.++++++|+++..      ||+++...+.+..-.
T Consensus       228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999      999998877766543

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.88  E-value=0.0002  Score=66.95  Aligned_cols=128  Identities=13%  Similarity=0.040  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhhccC-Cc--hhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 017523          182 FWSFWMILQVPISSSI-PN--HSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWCI  258 (370)
Q Consensus       182 ~~a~~~v~~~~~~~~~-~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~l  258 (370)
                      ++..+.++++++.++. ..  +..+++.++.+..+...+.......+.  ...   ..+.-....++...++..+...++
T Consensus        11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~al   85 (303)
T PF08449_consen   11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK--SRK---IPLKKYAILSFLFFLASVLSNAAL   85 (303)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC--CCc---ChHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445667888876543 23  778888888888887776666443111  111   112333444556677888899999


Q ss_pred             hccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          259 SERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       259 ~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      ++.+..+-.++....|+.+.++++++++++.+..++++.+++.+|+.+....+.++
T Consensus        86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            99999999999999999999999999999999999999999999999998766543

; GO: 0055085 transmembrane transport

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.86  E-value=0.00015  Score=57.56  Aligned_cols=66  Identities=12%  Similarity=0.331  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          246 ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      +.+++++++..++|+.+...+=.+ ..+..+.++++++++|||++++.+++|.++|++|+.......
T Consensus        39 ~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         39 MISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            567889999999999988877555 468889999999999999999999999999999998886544

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.74  E-value=0.00061  Score=55.75  Aligned_cols=132  Identities=8%  Similarity=0.032  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523          172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF  251 (370)
Q Consensus       172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~  251 (370)
                      ..++++++..+-++...++.++.++..++...+++.+..+.+...++.++.++.  ++.......|+..+ .|+.+....
T Consensus         2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~--~~~~~~~~p~w~~l-GG~lG~~~V   78 (138)
T PF04657_consen    2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRP--SLASLSSVPWWAYL-GGLLGVFFV   78 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhccc--ccchhccCChHHhc-cHHHHHHHH
Confidence            357888999999999999999888875699999999999999888877766543  22222222233322 444566666


Q ss_pred             HHHHHHHhccCceeeecchh-hHHHHHHHHHHH----HhcccchhhhHhHHHHHHHhhhh
Q 017523          252 FLQAWCISERGPLFCAMFNP-LCTVIVTVLAGL----FLDEEIFMGSLIGAFAVIIGLYV  306 (370)
Q Consensus       252 ~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~----~~~e~~~~~~~~G~~lI~~g~~l  306 (370)
                      .+..+.+++.|+.....+.. -|.+.+.++|.+    .-++++++.+++|.+++++|+++
T Consensus        79 ~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   79 LSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            77788899999988777665 466667777886    33468999999999999999864

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.65  E-value=0.00048  Score=53.91  Aligned_cols=66  Identities=17%  Similarity=0.244  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          246 ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      +.+++++++..++++.+...+=.. ..+..+.++++++++|||++++.+++|.++|++|++.....+
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            556778888888888877766444 457788889999999999999999999999999999986543

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=97.56  E-value=2.6e-05  Score=69.01  Aligned_cols=136  Identities=13%  Similarity=0.130  Sum_probs=95.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIAL  247 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~  247 (370)
                      ....|..+..++ ..+...+++.++....  ||.......+++-.++..+..++....  -|-......|+.+  -|+-+
T Consensus        35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~--~p~e~a~~r~l~~mlit~pcliy~~~~--v~gp~g~R~~LiL--Rg~mG  107 (346)
T KOG4510|consen   35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN--DPMELASFRLLVRMLITYPCLIYYMQP--VIGPEGKRKWLIL--RGFMG  107 (346)
T ss_pred             CCccCceehhhH-HHHhhHHHhhhhhhcc--ChhHhhhhhhhhehhhhheEEEEEeee--eecCCCcEEEEEe--ehhhh
Confidence            556788888888 8888888888887765  456555555544444333333322111  1112222223222  23333


Q ss_pred             HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      ..+.++.++++++.+-+-++.+.+.+|+++++++|.+++|+.+....+|..+-+.|+++..+.
T Consensus       108 ~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRP  170 (346)
T KOG4510|consen  108 FTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRP  170 (346)
T ss_pred             hhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecC
Confidence            456667788999999999999999999999999999999999999999999999999988753

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.55  E-value=0.00071  Score=61.21  Aligned_cols=81  Identities=17%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhhee
Q 017523          235 LELACCLYSGIALAISFFLQAWCISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVLW  309 (370)
Q Consensus       235 ~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~~  309 (370)
                      ..++.-...|+...+++..++++.++.|.+++-.+. .++.+.+.++++++|||+-+..++    ++.++|++|+++..+
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            445555667779999999999999999999999888 578888999999999998876654    477788899999888


Q ss_pred             ccchhh
Q 017523          310 GKAEDL  315 (370)
Q Consensus       310 ~~~~~~  315 (370)
                      ++++++
T Consensus       123 ~~~~~~  128 (269)
T PF06800_consen  123 QDKKSD  128 (269)
T ss_pred             cccccc
Confidence            665543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.48  E-value=0.0017  Score=50.67  Aligned_cols=63  Identities=10%  Similarity=0.155  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523          246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~  308 (370)
                      +.++++++...++|+.+...+ ++...+..+.+++.++++|||++++.+++|.++|+.|+....
T Consensus        44 ~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk  107 (109)
T PRK10650         44 AVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK  107 (109)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            567788999999999887765 445557788889999999999999999999999999998763

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=97.46  E-value=0.00046  Score=64.15  Aligned_cols=120  Identities=21%  Similarity=0.217  Sum_probs=86.1

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHH
Q 017523          167 DNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIA  246 (370)
Q Consensus       167 ~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~  246 (370)
                      ..+..|..++++|+++.+....++|+-..|.+ .-..-.-..        ...+          ...+.+|..++..   
T Consensus         3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~-~~~~~~~~~--------~~~~----------l~~~~W~~G~~~~---   60 (300)
T PF05653_consen    3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLP-RGSLRAGSG--------GRSY----------LRRPLWWIGLLLM---   60 (300)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccccch--------hhHH----------HhhHHHHHHHHHH---
Confidence            35789999999999999999999998655542 100000000        0000          1112233333322   


Q ss_pred             HHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          247 LAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       247 ~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                       .++..+.+.++...+++.++.++.+..++..+++..++||+++...++|.++++.|..+...
T Consensus        61 -~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   61 -VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             -hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence             33445566788888999999999999999999999999999999999999999999887654

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.0011  Score=50.93  Aligned_cols=65  Identities=17%  Similarity=0.289  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      +..++|++...++|+.+...+ ++......+.+++.++++|||+++..+++|.+++++|+......
T Consensus        39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            456788888899999887655 55666788889999999999999999999999999999987654

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.41  E-value=0.0016  Score=50.80  Aligned_cols=71  Identities=15%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           64 FGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        64 ~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      +++....- .++...+++...+++..|.+.+-.+-. .--+.+.+++.++++|++++.      |++|+.+.+.|++.+
T Consensus        35 ~~~~~~~~-~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         35 KIYGILSL-AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             hHHHHHHH-HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            44433333 334778889999999999999988876 677788899999999999999      999999999999886

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.40  E-value=0.0014  Score=61.68  Aligned_cols=136  Identities=12%  Similarity=0.011  Sum_probs=93.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH-----HHhcCCc-ccccccchhHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVA-----LLVEKNL-EAWTLNSFLELACCL  241 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~l  241 (370)
                      +...|.++++++++||+.+.+-+|+ .++.  +.... |- ..+. +..++.     .+..++. ......+...+....
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w--~wE~~-W~-v~gi-~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~   77 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKW--SWETM-WS-VGGI-FSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVF   77 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCC--chhHH-HH-HHHH-HHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHH
Confidence            4678999999999999999999998 5554  22222 33 2222 221111     1222221 112223344455556


Q ss_pred             HHHHHHHHHHHHHHHHHhccCceeeecch-hhHHHHHHHHHHHHhcccc---h----hhhHhHHHHHHHhhhhhee
Q 017523          242 YSGIALAISFFLQAWCISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEI---F----MGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       242 ~~gi~~~~~~~~~~~~l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~---~----~~~~~G~~lI~~g~~l~~~  309 (370)
                      ..|+...++...+..++|+.|.+..-.+. -++-+.+.+++.+++||..   +    ...++|.+++++|+.+..+
T Consensus        78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~  153 (345)
T PRK13499         78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGR  153 (345)
T ss_pred             HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            66778899999999999999998876665 4889999999999999765   2    2356899999999999876

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.34  E-value=0.0022  Score=49.73  Aligned_cols=64  Identities=17%  Similarity=0.227  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      +.++++++...++|+.+...+ ++...+..+.+++.++++|||++++.+++|.++|++|+.....
T Consensus        38 ~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         38 AMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            567788888999998887665 4555588889999999999999999999999999999988753

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=97.28  E-value=0.0017  Score=49.28  Aligned_cols=55  Identities=18%  Similarity=0.318  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHH
Q 017523          246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAV  300 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI  300 (370)
                      +.++++.++.+++|+.+...+ .+...+..+...+.++++|||+++..+++|.++|
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            667889999999999999988 5566799999999999999999999999999886

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=97.26  E-value=0.0002  Score=62.76  Aligned_cols=132  Identities=12%  Similarity=0.068  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523          172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF  251 (370)
Q Consensus       172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~  251 (370)
                      +.+++++=++.|+..-....|...   +|...+.-+. +++++..+..++...+     ..+...+..-...|....+++
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~GG---~p~qQ~lGtT-~GALifaiiv~~~~~p-----~~T~~~~iv~~isG~~Ws~GQ   73 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKFGG---KPYQQTLGTT-LGALIFAIIVFLFVSP-----ELTLTIFIVGFISGAFWSFGQ   73 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeecCC---ChhHhhhhcc-HHHHHHHHHHheeecC-----ccchhhHHHHHHhhhHhhhhh
Confidence            457889999999988887766543   2454444433 3444443333322221     112223333344555788899


Q ss_pred             HHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcccchhhhH----hHHHHHHHhhhhheeccc
Q 017523          252 FLQAWCISERGPLFCAMFNP-LCTVIVTVLAGLFLDEEIFMGSL----IGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       252 ~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~~~~e~~~~~~~----~G~~lI~~g~~l~~~~~~  312 (370)
                      ..++++++..+.+++..++. .|-+-+.+++++.|||+.+..++    +..++++.|+++-.+.++
T Consensus        74 ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~  139 (288)
T COG4975          74 ANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR  139 (288)
T ss_pred             hhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence            99999999999999988865 78888999999999999988865    356678899998888665

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.20  E-value=0.006  Score=50.09  Aligned_cols=140  Identities=9%  Similarity=0.002  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccch-hHHHHHHHHHHHH
Q 017523          169 WLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSF-LELACCLYSGIAL  247 (370)
Q Consensus       169 ~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~gi~~  247 (370)
                      ..+..++++++..+-.+..-+..++.+...+|..-.+..+.++++.+..+.+..++. ..+..... .+|..+  .|+.+
T Consensus         3 ~~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~-~~~a~~~~~pwW~~~--GG~lG   79 (150)
T COG3238           3 MYLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGH-PGLAAVASAPWWAWI--GGLLG   79 (150)
T ss_pred             cHHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCC-CchhhccCCchHHHH--ccchh
Confidence            345677888888998888888888877775688888899999999888887764332 22332122 233332  22322


Q ss_pred             HHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhc----ccchhhhHhHHHHHHHhhhhheecc
Q 017523          248 AISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLD----EEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       248 ~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~----e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      .+--+.-.....+.|++.. .....-|.+.+.++|.+=++    .+++...++|.+++++|+++..+++
T Consensus        80 a~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~  148 (150)
T COG3238          80 AIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG  148 (150)
T ss_pred             hhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence            2233334456666666544 44556678888888888665    6789999999999999966665543

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.14  E-value=0.00093  Score=53.03  Aligned_cols=69  Identities=14%  Similarity=-0.020  Sum_probs=59.9

Q ss_pred             HHHHHHhHHHHHHHhhccccchhHHHHhh-hhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523           70 ASLIGVTANQNAYFEGLYLSSSTVASAMT-NLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus        70 ~g~~~~~~~~~~~~~al~~~~~~~a~~i~-~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      ..+..+...++++..++++.|.+.+-.+- ...-+.+.+++.++++|++++.      |++|+.+.++|++.+-..
T Consensus        35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l~  104 (120)
T PRK10452         35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKSG  104 (120)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhcC
Confidence            34444578889999999999999999986 4788889999999999999999      999999999999888533

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.07  E-value=0.0014  Score=51.28  Aligned_cols=66  Identities=12%  Similarity=0.122  Sum_probs=58.2

Q ss_pred             HHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           71 SLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        71 g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      .+.++.+.++++..+++..|.+.+-.+-. ..-+.+.++++++++|++++.      |++|+.+.++|++.+-
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~  102 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVIN  102 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            34445778888999999999999998854 778888999999999999999      9999999999999984

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.05  E-value=0.0012  Score=51.52  Aligned_cols=111  Identities=13%  Similarity=0.134  Sum_probs=75.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAY   82 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   82 (370)
                      +++..++||...++.|..... .++..-.. |..-....     +++          +   + ++.+ .++-.-.+...|
T Consensus         1 ~l~Vg~~WG~Tnpfik~g~~~-~~~~~~~~-~~~~~~~~-----Ll~----------n---~-~y~i-pf~lNq~GSv~f   58 (113)
T PF10639_consen    1 LLLVGILWGCTNPFIKRGSSG-LEKVKASL-QLLQEIKF-----LLL----------N---P-KYII-PFLLNQSGSVLF   58 (113)
T ss_pred             CeeehHHhcCchHHHHHHHhh-cCCccchH-HHHHHHHH-----HHH----------h---H-HHHH-HHHHHHHHHHHH
Confidence            356789999999999998865 44443331 32111111     010          0   1 1112 222235566788


Q ss_pred             HhhccccchhHHHHhh-hhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           83 FEGLYLSSSTVASAMT-NLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        83 ~~al~~~~~~~a~~i~-~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      ++.+...+.+.+..+. .++=++|++.++++.+|..+++      +++|+.+.++|+.+.
T Consensus        59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVALC  112 (113)
T ss_pred             HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeeee
Confidence            8899999999999997 5777888888888888888888      899999999998764

Many members are annotated as potential transmembrane proteins.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=97.02  E-value=0.0072  Score=49.45  Aligned_cols=124  Identities=20%  Similarity=0.192  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHh
Q 017523            6 LQFLYAGVALFTRVALVQGL-SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFE   84 (370)
Q Consensus         6 ~~~~~g~~~~~~k~~~~~g~-~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   84 (370)
                      +.++-+....+.-...+. . +|..-+++-+..+++++..+.+..+++..+..+   +..++..+.|+++ .....+...
T Consensus         9 aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~---~~p~w~~lGG~lG-~~~V~~~~~   83 (138)
T PF04657_consen    9 AGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLS---SVPWWAYLGGLLG-VFFVLSNII   83 (138)
T ss_pred             HHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc---cCChHHhccHHHH-HHHHHHHHH
Confidence            334444444444444433 4 599999999999999988877776654222211   2245666688888 888888999


Q ss_pred             hccccchhHHHHhhhh-HHHHHHHHHHH----hcccccccccccccceeeehhhhhhhhHH
Q 017523           85 GLYLSSSTVASAMTNL-MPAVTFVMAFI----AGWEKVHNRSLRSIAKILGTIFCVGGAIT  140 (370)
Q Consensus        85 al~~~~~~~a~~i~~~-~P~~~~lla~~----~~~E~~~~~~~~~~~~~~g~~l~~~Gv~l  140 (370)
                      ......++.++.+.-+ +-+...++..+    .-+++++++      |++|+++.++|+++
T Consensus        84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            9999999988888765 55556666664    357788888      99999999999864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.0045  Score=47.58  Aligned_cols=62  Identities=18%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             HhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           75 VTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        75 ~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      +...+.+.-.++++.|.+.+-++-. .--+.+.+.++++++|++++.      |++|+.+.++|++.+-
T Consensus        40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhh
Confidence            4677888899999999999988876 677778899999999999999      9999999999999873

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.88  E-value=0.0073  Score=46.81  Aligned_cols=65  Identities=11%  Similarity=0.051  Sum_probs=57.3

Q ss_pred             HHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523           72 LIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus        72 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      +.++...+++...+++..|.+.+-.+-. .--+.+.+++.++++|++++.      |++|+.+.++|++.+-
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            3344778889999999999999988876 777888999999999999999      9999999999999873

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=96.78  E-value=0.002  Score=57.94  Aligned_cols=133  Identities=13%  Similarity=0.050  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHH
Q 017523          172 GCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISF  251 (370)
Q Consensus       172 G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~  251 (370)
                      |.+.+++|+++|+...+=.|+.-..  |++....+++....+...++.+..+.+  .+.      .++++... ....+-
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~~~p--~f~------p~amlgG~-lW~~gN   69 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLILGFP--PFY------PWAMLGGA-LWATGN   69 (254)
T ss_pred             CchhHHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhcCCC--cce------eHHHhhhh-hhhcCc
Confidence            4567889999999999988876544  677766666666555555555543322  111      11111111 111112


Q ss_pred             HHHHHHHhccCceeeecc-hhhHHHHHHHHHHH-Hhcccc-----hhhhHhHHHHHHHhhhhheeccchhh
Q 017523          252 FLQAWCISERGPLFCAMF-NPLCTVIVTVLAGL-FLDEEI-----FMGSLIGAFAVIIGLYVVLWGKAEDL  315 (370)
Q Consensus       252 ~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~-~~~e~~-----~~~~~~G~~lI~~g~~l~~~~~~~~~  315 (370)
                      .+-.-.+|..|-...-.+ +..+.+.+-..+.+ +||++.     .+..++|++++++|..++..-|++++
T Consensus        70 ~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~  140 (254)
T PF07857_consen   70 ILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEK  140 (254)
T ss_pred             eeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCC
Confidence            222223333332222222 22344555555544 455432     45678999999999999887766553

The region concerned is approximately 280 residues long.

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.76  E-value=0.0038  Score=56.30  Aligned_cols=68  Identities=16%  Similarity=0.205  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                      .-.+...+.+.++++.+|++..++..+.+++++++.+++++.+++..+|++..+..+|+.++......
T Consensus        26 lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   26 LYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            44556677889999999999999999999999999999999999999999999999999998775544

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.43  E-value=0.025  Score=44.26  Aligned_cols=109  Identities=14%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 017523          178 GSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGIALAISFFLQAWC  257 (370)
Q Consensus       178 ~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi~~~~~~~~~~~~  257 (370)
                      +-+++|+..+-+.||-.+... +..-.. + ...-...    ++.          +   |-..+-.. ....+...|++.
T Consensus         3 ~Vg~~WG~Tnpfik~g~~~~~-~~~~~~-~-~~~~~~~----Ll~----------n---~~y~ipf~-lNq~GSv~f~~~   61 (113)
T PF10639_consen    3 LVGILWGCTNPFIKRGSSGLE-KVKASL-Q-LLQEIKF----LLL----------N---PKYIIPFL-LNQSGSVLFFLL   61 (113)
T ss_pred             eehHHhcCchHHHHHHHhhcC-CccchH-H-HHHHHHH----HHH----------h---HHHHHHHH-HHHHHHHHHHHH
Confidence            457899999999999776553 222211 2 1111111    111          0   11111111 234456778899


Q ss_pred             HhccCceeeecch-hhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhh
Q 017523          258 ISERGPLFCAMFN-PLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVV  307 (370)
Q Consensus       258 l~~~~~~~~s~~~-~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~  307 (370)
                      +.+.+-+.+..+. .+.-+++++.++++.+|..+...++|.++|+.|+.++
T Consensus        62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            9999999999984 8999999999998888888989999999999998764

Many members are annotated as potential transmembrane proteins.

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.24  E-value=0.022  Score=43.22  Aligned_cols=56  Identities=18%  Similarity=-0.015  Sum_probs=34.0

Q ss_pred             HHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhh
Q 017523           72 LIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIF  133 (370)
Q Consensus        72 ~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l  133 (370)
                      +.++....+++..++++.|.+.+-.+-. +..+.+.+.+.++++|+++++      |++|+.+
T Consensus        36 ~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   36 VVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3345788899999999999999988765 888999999999999999999      8888765

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.24  E-value=0.008  Score=56.13  Aligned_cols=138  Identities=15%  Similarity=0.186  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccc-hHHHHHHHHHHHHHHhH
Q 017523            2 AMVALQFLYAGVALFTRVALVQ---GLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLG-LRTFGWLFVASLIGVTA   77 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~---g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~   77 (370)
                      ..++.++++|.+.++.|.-.++   .+|--.+-.+-.++..++++|..++...-.++++..+ ..|...++..++++.++
T Consensus       251 laL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvv  330 (416)
T KOG2765|consen  251 LALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVV  330 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHH
Confidence            4577889999999999986543   2665555566677888888877665544333333322 24577788889999999


Q ss_pred             HHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhhc
Q 017523           78 NQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALLK  145 (370)
Q Consensus        78 ~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~  145 (370)
                      ..++|..|.-.+++-.+++=..++--+.++...++.+.++++.      .++|.+..++|-+++...+
T Consensus       331 SDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~~~  392 (416)
T KOG2765|consen  331 SDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNISS  392 (416)
T ss_pred             HHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheeccc
Confidence            9999999999999999988887666667777888889999988      9999999999988885443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.14  E-value=0.0072  Score=56.23  Aligned_cols=133  Identities=12%  Similarity=0.104  Sum_probs=99.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHHHHH-HHHHHhhcccc---cccccchHHHHHHHHHHHHHH
Q 017523            3 MVALQFLYAGVALFTRVALV---QGLSPRVFVVYRQGTAALIMA-PIVYISTRKSS---YRLSLGLRTFGWLFVASLIGV   75 (370)
Q Consensus         3 ~~~~~~~~g~~~~~~k~~~~---~g~~p~~~~~~R~~~~~l~l~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~   75 (370)
                      .+.+.+..+.-.++.|..+.   +.+|++.+..+-.-++.+.++ |+....+....   ....++...+..+ +..++. 
T Consensus       168 a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~-~~sv~~-  245 (316)
T KOG1441|consen  168 AMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL-LNSVLA-  245 (316)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH-HHHHHH-
Confidence            34556777888889999884   349999999998888888888 88776554332   1112333324443 344676 


Q ss_pred             hHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           76 TANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        76 ~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      .+.+..-|..+..++|-.-++...+==+++...+++++++++++.      +..|..++++|+.+=..
T Consensus       246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~~  307 (316)
T KOG1441|consen  246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYSR  307 (316)
T ss_pred             HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHHH
Confidence            666777888999998888888887777778888999999999999      99999999999988643

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=96.09  E-value=0.84  Score=42.68  Aligned_cols=238  Identities=13%  Similarity=0.095  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhccccc-ccccccccceeeehhhhhhhhH
Q 017523           62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKV-HNRSLRSIAKILGTIFCVGGAI  139 (370)
Q Consensus        62 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~-~~~~~~~~~~~~g~~l~~~Gv~  139 (370)
                      ..+++..+.|++= .+....|=.+++|+..+..+.+.- +.-++-.++-.++.++-- -..+..++..++|++++++|+.
T Consensus        71 ~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa  149 (344)
T PF06379_consen   71 STLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA  149 (344)
T ss_pred             hHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence            3477778888884 788889999999998877766654 666666666666544311 1223346678999999999999


Q ss_pred             HHhhhcCCccccccCCCCCcccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHh-------hccCCchhH----HHHHHH
Q 017523          140 TMALLKGPKLVNEEFIPPKSLIFSSGADNWLLGCFLLFGSSWFWSFWMILQVPI-------SSSIPNHSY----SSAWMC  208 (370)
Q Consensus       140 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~~~~-------~~~~~~~~~----~~~~~~  208 (370)
                      ++......+      +.+.+  .+..+.+...|.+++++|.+.-|.+++-...-       .+...+++.    ......
T Consensus       150 i~g~AG~~K------e~~~~--~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~  221 (344)
T PF06379_consen  150 ICGKAGSMK------EKELG--EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVL  221 (344)
T ss_pred             HHhHHHHhh------hhhhc--cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhh
Confidence            986432211      11111  11334567899999999999999988865421       110001211    111111


Q ss_pred             HHHHHHHHHHHHHh---cCCcc---ccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCce----eeecchhhHHH
Q 017523          209 FLASLESATVALLV---EKNLE---AWT---LNSFLELACCLYSGIALAISFFLQAWCISERGPL----FCAMFNPLCTV  275 (370)
Q Consensus       209 ~~~~i~~~~~~~~~---~~~~~---~~~---~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~----~~s~~~~l~pv  275 (370)
                      .-+.+.-+.-.+..   .++..   ++.   .+...++...+..|+.....++.|-++-.+.++.    --.+.+.+..+
T Consensus       222 ~GGf~tN~~yc~~~l~~~k~~s~~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl  301 (344)
T PF06379_consen  222 WGGFITNLIYCLILLAKNKNWSWKGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVL  301 (344)
T ss_pred             hhHHHHHHHHHHHHHhhcCCCccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            22222222222221   12221   111   1122455565667777788888888888877754    23345566677


Q ss_pred             HHHHHHHHHhccc------chhhhHhHHHHHHHhhhhhee
Q 017523          276 IVTVLAGLFLDEE------IFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       276 ~a~~~~~~~~~e~------~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      ++-+++. +++|.      .-..-++|.++++.++.++-+
T Consensus       302 ~snvwGl-~lkEWKg~s~kt~~vl~~G~~vlI~s~~ivG~  340 (344)
T PF06379_consen  302 FSNVWGL-ILKEWKGASKKTIRVLVLGIAVLILSVVIVGY  340 (344)
T ss_pred             HHHHHHH-HHHHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence            7777776 46763      223357888888888777644

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=95.91  E-value=0.29  Score=45.79  Aligned_cols=140  Identities=11%  Similarity=0.011  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc----CCchhHHHHHHHHHHHHHHHHHHHHhcCC-----ccc---ccccchhHHH
Q 017523          171 LGCFLLFGSSWFWSFWMILQVPISSS----IPNHSYSSAWMCFLASLESATVALLVEKN-----LEA---WTLNSFLELA  238 (370)
Q Consensus       171 ~G~~l~l~aa~~~a~~~v~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~---~~~~~~~~~~  238 (370)
                      .=.+..++..+.++......|...++    + .+.+..+..-+.-.+++..+.+...+.     ...   +....+.+..
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f-~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l   93 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMF-LPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL   93 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence            44566677777888888887765433    3 477888888888888887777755311     111   1111111122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          239 CCLYSGIALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       239 ~~l~~gi~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      .+..=++...+--.+++.++++.+|++..+...+.+..+.++.+++++++++..||...++...|+.++.+..
T Consensus        94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~  166 (345)
T KOG2234|consen   94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPS  166 (345)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC
Confidence            2111111122233477889999999999999999999999999999999999999999999999999998433

>TIGR00803 nst UDP-galactose transporter

Probab=94.65  E-value=0.095  Score=46.45  Aligned_cols=65  Identities=14%  Similarity=0.087  Sum_probs=56.1

Q ss_pred             HHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhH
Q 017523           68 FVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAI  139 (370)
Q Consensus        68 ~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~  139 (370)
                      +...+.. +..+.+...-++|.++..-+....+.++++.+++.++++|+++..      +++|+.+.+.|+.
T Consensus       156 ~~~~~~~-a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       156 WIVGLLN-VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHHHH-HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            3344444 667778888999999999999999999999999999999999999      9999999888764

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.39  E-value=0.58  Score=38.54  Aligned_cols=107  Identities=11%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh-hHHHH
Q 017523           26 SPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN-LMPAV  104 (370)
Q Consensus        26 ~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~-~~P~~  104 (370)
                      +|..-.+.-+..+.+++..+.+...++.  ......+..+|.+..|+++ +.+-...........++...++.- -+-+.
T Consensus        33 spl~As~isf~vGt~~L~~l~l~~~~~~--~~a~~~~~pwW~~~GG~lG-a~~vt~s~~l~p~lGa~~t~~l~i~gQli~  109 (150)
T COG3238          33 SPLLASLISFLVGTVLLLILLLIKQGHP--GLAAVASAPWWAWIGGLLG-AIFVTSSILLAPRLGAATTIALVIAGQLIM  109 (150)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhcCCC--chhhccCCchHHHHccchh-hhhhhhhHHhccchhHHHHHHHHHHHHHHH
Confidence            5888889999999888888777744332  2233334577888888887 666666666666666665555544 34444


Q ss_pred             HHHHHHH-hc---ccccccccccccceeeehhhhhhhhHHH
Q 017523          105 TFVMAFI-AG---WEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus       105 ~~lla~~-~~---~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      ..++..+ ++   +.+++..      |++|+++.++|++++
T Consensus       110 glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~  144 (150)
T COG3238         110 GLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA  144 (150)
T ss_pred             HHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence            4444432 12   3556666      999999999995554

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=0.025  Score=51.94  Aligned_cols=125  Identities=17%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcccccccchhHHHHHHHHHH
Q 017523          166 ADNWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWTLNSFLELACCLYSGI  245 (370)
Q Consensus       166 ~~~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gi  245 (370)
                      ...+..|.++++.+.+..+...++.|+..+|.. .   ...+             ..+++ ..+. ..+.+|..++-.++
T Consensus        16 ~~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~-~---~~~r-------------a~~gg-~~yl-~~~~Ww~G~ltm~v   76 (335)
T KOG2922|consen   16 SSDNIIGLVLAISSSIFIGSSFILKKKGLKRAG-A---SGLR-------------AGEGG-YGYL-KEPLWWAGMLTMIV   76 (335)
T ss_pred             ccCceeeeeehhhccEEEeeehhhhHHHHHHHh-h---hccc-------------ccCCC-cchh-hhHHHHHHHHHHHH
Confidence            456789999999999999999999998766542 1   0000             01111 1111 22334554444444


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                          +-.+.+.+....+++.++.++.++.++.++++..+++|++++...+|+++.++|.++.....++
T Consensus        77 ----Gei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~  140 (335)
T KOG2922|consen   77 ----GEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPK  140 (335)
T ss_pred             ----HhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCc
Confidence                3344444555568999999999999999999999999999999999999999997776544333

>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine

Probab=93.96  E-value=0.041  Score=50.13  Aligned_cols=130  Identities=15%  Similarity=0.131  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCcc-----------cccccchhHHHHHHHHHH
Q 017523          177 FGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLE-----------AWTLNSFLELACCLYSGI  245 (370)
Q Consensus       177 l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~gi  245 (370)
                      +++.+||+.|-..+|...++.. ....++|=..++.++..++..+.-+...           +....+...+......|+
T Consensus         2 ~itmlcwGSW~nt~kL~~r~gR-~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv   80 (336)
T PF07168_consen    2 VITMLCWGSWPNTQKLAERRGR-LPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV   80 (336)
T ss_pred             eeehhhhcChHHHHHHHHhcCC-ccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence            5678899999999988766432 1123445555555444444332222111           111122223333344444


Q ss_pred             HHHHHHHHHHHHHhccCceeeecchh-hHHHHHHHHHHHHhcccchh--hhHhHHHHHHHhhhhhe
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNP-LCTVIVTVLAGLFLDEEIFM--GSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~-l~pv~a~~~~~~~~~e~~~~--~~~~G~~lI~~g~~l~~  308 (370)
                      .--++-.+..+++...|-+.+-.+.. +..++++.+.| +++.+...  .-+.|.+++++++.+-.
T Consensus        81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NY-fld~~~n~a~iLF~GV~cf~iAI~lga  145 (336)
T PF07168_consen   81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNY-FLDPKINRAEILFPGVACFLIAIILGA  145 (336)
T ss_pred             hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeee-eccCCCCCceEEEccHHHHHHHHHHHH
Confidence            44556666777776666655544432 23344555555 34566553  34568888888877753

Transport is dependent on glucose and a proton gradient [].

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=93.68  E-value=0.86  Score=41.21  Aligned_cols=180  Identities=8%  Similarity=-0.034  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHhHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGVTANQNA   81 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   81 (370)
                      +.+.+.+++|.+++=.|..- . -|++.+-++-.....+.-+.+.++..   .|+    .  ..+.++.|.+ .+.++.+
T Consensus         4 a~~va~~~fGs~~vPvK~~~-~-gDg~~fQw~~~~~i~~~g~~v~~~~~---~p~----f--~p~amlgG~l-W~~gN~~   71 (254)
T PF07857_consen    4 ACIVAVLFFGSNFVPVKKFD-T-GDGFFFQWVMCSGIFLVGLVVNLILG---FPP----F--YPWAMLGGAL-WATGNIL   71 (254)
T ss_pred             hHHHHHHHhcccceeeEecc-C-CCcHHHHHHHHHHHHHHHHHHHHhcC---CCc----c--eeHHHhhhhh-hhcCcee
Confidence            56788999999999999864 4 48887777765554444444433322   222    1  3344455555 5888888


Q ss_pred             HHhhccccchhHHHHhhhhHHHHHHHHHH-H-hcccccccccccccceeeehhhhhhhhHHHhhhcCCccccccC-C---
Q 017523           82 YFEGLYLSSSTVASAMTNLMPAVTFVMAF-I-AGWEKVHNRSLRSIAKILGTIFCVGGAITMALLKGPKLVNEEF-I---  155 (370)
Q Consensus        82 ~~~al~~~~~~~a~~i~~~~P~~~~lla~-~-~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~~~~~~~~~~~-~---  155 (370)
                      -.-.++....+.+..+-++.-+++--..- + +++++.... +......+|+.++++|..+..+.+.+.....+. +   
T Consensus        72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~  150 (254)
T PF07857_consen   72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP  150 (254)
T ss_pred             ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence            88899999999998887765555443332 2 344333222 234557788888888888776655443111100 0   


Q ss_pred             --CCC------c---ccccC------CCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 017523          156 --PPK------S---LIFSS------GADNWLLGCFLLFGSSWFWSFWMILQVPIS  194 (370)
Q Consensus       156 --~~~------~---~~~~~------~~~~~~~G~~l~l~aa~~~a~~~v~~~~~~  194 (370)
                        .++      +   ....+      ...+...|..+++++++.|+...+=...+.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~  206 (254)
T PF07857_consen  151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQ  206 (254)
T ss_pred             cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHH
Confidence              000      0   00001      112467899999999999998766544443

The region concerned is approximately 280 residues long.

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=93.59  E-value=0.07  Score=45.55  Aligned_cols=66  Identities=14%  Similarity=0.162  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccchh
Q 017523          249 ISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAED  314 (370)
Q Consensus       249 ~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~~  314 (370)
                      .+-++|..++++.+|+.++.+....-.+..+++++++||++..-.++.+++.+.|+++..+....+
T Consensus        65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~  130 (290)
T KOG4314|consen   65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEH  130 (290)
T ss_pred             cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchh
Confidence            356789999999999999999999999999999999999999999999999999999988755433

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.87  E-value=0.1  Score=45.82  Aligned_cols=73  Identities=15%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           62 RTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        62 ~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      ..++-+.+.++.+ ++++.+.|.-..+-+|-..+++..+--+||++.+.++++.+++.+      ||+|..+.+.|..+=
T Consensus       239 ~~~~~l~l~ai~s-~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  239 YVFWDLTLLAIAS-CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHHHHHHHHHHH-HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhH
Confidence            3377788889998 999999999999999988999999999999999999999999999      999999998887663

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=92.57  E-value=1.3  Score=40.56  Aligned_cols=113  Identities=13%  Similarity=0.047  Sum_probs=85.1

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhhccccccc---ccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhh
Q 017523           23 QGLSPRVFVVYRQGTAALIMAPIVYISTRKSSYRL---SLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTN   99 (370)
Q Consensus        23 ~g~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~   99 (370)
                      .++++.++++.-++..++.-.... +.....++.+   +...+-++-+++.+.++ +++|.+.|+-++.-.+-.-++|.-
T Consensus       198 ~k~s~~~mM~~vNLf~~i~~~~~l-i~qg~~~~av~F~~~hp~~~~Di~l~s~~g-avGQ~FI~~TI~~FGslt~t~I~t  275 (327)
T KOG1581|consen  198 YKVSSLHMMFGVNLFSAILNGTYL-ILQGHLLPAVSFIKEHPDVAFDILLYSTCG-AVGQLFIFYTIERFGSLTFTTIMT  275 (327)
T ss_pred             CCccHhHHHHHHHHHHHHHHHHhh-hcCCCCchHHHHHHcChhHHHHHHHHHHhh-hhhhheehhhHhhcccHHHHHHHH
Confidence            358999999999998887665542 2222222211   11123367778889998 888888888888777766777888


Q ss_pred             hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523          100 LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus       100 ~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      +==++..+++.+.++.++++.      +|+|+.+.+.|..+=.+
T Consensus       276 tRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~~  313 (327)
T KOG1581|consen  276 TRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEIL  313 (327)
T ss_pred             HHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHHH
Confidence            888999999999999999999      99999999999877543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.09  E-value=2.3  Score=39.29  Aligned_cols=124  Identities=15%  Similarity=0.089  Sum_probs=82.6

Q ss_pred             HHHHHHHHH----HHHHHHhhccCCch--hHHHHHHHHHHHHHHHHHHHHh--cCCcccccccchhHHHH--HHHHHHHH
Q 017523          178 GSSWFWSFW----MILQVPISSSIPNH--SYSSAWMCFLASLESATVALLV--EKNLEAWTLNSFLELAC--CLYSGIAL  247 (370)
Q Consensus       178 ~aa~~~a~~----~v~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~--~l~~gi~~  247 (370)
                      .++++|++.    .+..|.....++-|  +....+|++.+.+.....-...  +.+..+|..  ...|..  +++.+   
T Consensus        15 ~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~--~kk~~P~~~lf~~---   89 (314)
T KOG1444|consen   15 LSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRT--AKKWFPVSLLFVG---   89 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHH--HHHHccHHHHHHH---
Confidence            344444443    44456655555434  4444589888887766655522  222222332  223332  23332   


Q ss_pred             HHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhe
Q 017523          248 AISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVL  308 (370)
Q Consensus       248 ~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~  308 (370)
                        ..+.-.+++++.+.....++...+|+.+.+...+++|-+++...+.....+++|.....
T Consensus        90 --~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~  148 (314)
T KOG1444|consen   90 --MLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA  148 (314)
T ss_pred             --HHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence              23334578999999999999999999999999999999999999999999998877653

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=91.45  E-value=1.6  Score=40.87  Aligned_cols=140  Identities=12%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH-HhcCCccc-ccccchhHHHHHHHHHH
Q 017523          168 NWLLGCFLLFGSSWFWSFWMILQVPISSSIPNHSYSSAWMCFLASLESATVAL-LVEKNLEA-WTLNSFLELACCLYSGI  245 (370)
Q Consensus       168 ~~~~G~~l~l~aa~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~gi  245 (370)
                      .-..|.++-.+++++-+.+.+=.||. |+.+ --+.=..+.+++-++.-.+.. ..-++..+ ....+...+......|+
T Consensus         4 ~ii~Gii~h~iGg~~~~sfy~P~kkv-k~Ws-WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    4 AIILGIIFHAIGGFASGSFYVPFKKV-KGWS-WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             hHHHHHHHHHHHHHHhhhhccchhhc-CCcc-HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            46789999999999999999998884 4442 222222333443333322222 22232211 12223345555566777


Q ss_pred             HHHHHHHHHHHHHhccCceee-ecchhhHHHHHHHHHHHHhcc-------cchhhhHhHHHHHHHhhhhhee
Q 017523          246 ALAISFFLQAWCISERGPLFC-AMFNPLCTVIVTVLAGLFLDE-------EIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~-s~~~~l~pv~a~~~~~~~~~e-------~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      -.+++-..|-.++|+.|.+.. ++..-+.-+++.++--++.|+       +-....++|.++.++|+.+.-+
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~  153 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK  153 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence            778888888999999987654 344445666666665554332       2233567899999999998865

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=89.35  E-value=2.5  Score=38.91  Aligned_cols=125  Identities=11%  Similarity=0.089  Sum_probs=85.1

Q ss_pred             HHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHhccCceee
Q 017523          189 LQVPISSSIPNHSYSSAWMCFLASLESATVALLVEKNLEAWT--LNSFLELACCLYSGIALAISFFLQAWCISERGPLFC  266 (370)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~gi~~~~~~~~~~~~l~~~~~~~~  266 (370)
                      ++++..++++=|+-.+.++..+-.......-...+...+.-.  ..+...+.-++-.++++++=-.+-.|+++.++.+.-
T Consensus        34 ~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlY  113 (349)
T KOG1443|consen   34 YFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLY  113 (349)
T ss_pred             HhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeee
Confidence            445555556557777776666544444333333332211111  111112222334555666667778899999999999


Q ss_pred             ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccch
Q 017523          267 AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKAE  313 (370)
Q Consensus       267 s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~~  313 (370)
                      ++.-...++|-.+++.++-=|++++.-.+-..+|-+|+++..+.+.+
T Consensus       114 TM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq  160 (349)
T KOG1443|consen  114 TMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ  160 (349)
T ss_pred             eeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc
Confidence            99999999999999999999999999999999999999998886543

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=89.32  E-value=3  Score=36.62  Aligned_cols=111  Identities=13%  Similarity=0.029  Sum_probs=88.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhccccc--ccccchHHHHHHHHHHHHHHhHHHHHHHhhccccchhHHHHhhhhHH
Q 017523           25 LSPRVFVVYRQGTAALIMAPIVYISTRKSSY--RLSLGLRTFGWLFVASLIGVTANQNAYFEGLYLSSSTVASAMTNLMP  102 (370)
Q Consensus        25 ~~p~~~~~~R~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~~~~~a~~i~~~~P  102 (370)
                      ...+..++|..+++..+++.+.+..+.+...  .-..+...+.++++.|++. +.-.++.-+.++.++.+.-+++..+.-
T Consensus       183 f~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s-vgiSy~saWcvrVtSSTtySMvGALNK  261 (309)
T COG5070         183 FKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS-VGISYCSAWCVRVTSSTTYSMVGALNK  261 (309)
T ss_pred             cchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH-hhhhhccceeEeehhhhHHHHHHHhhh
Confidence            6678889999999999998888777654432  1122333366888889997 777788888999999999999999988


Q ss_pred             HHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHh
Q 017523          103 AVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMA  142 (370)
Q Consensus       103 ~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~  142 (370)
                      .-..+-+.++++|+.+..      ++..+++++...++-.
T Consensus       262 lp~alaGlvffdap~nf~------si~sillGflsg~iYa  295 (309)
T COG5070         262 LPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA  295 (309)
T ss_pred             ChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence            888888999999999988      8999888887665543

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=89.28  E-value=3.7  Score=31.44  Aligned_cols=110  Identities=18%  Similarity=0.254  Sum_probs=68.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhCCCC------chhHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHH
Q 017523            2 AMVALQFLYAGVALFTRVALVQGLS------PRVFVVYRQGTAALIMAPIVYISTRKSSYRLSLGLRTFGWLFVASLIGV   75 (370)
Q Consensus         2 ~~~~~~~~~g~~~~~~k~~~~~g~~------p~~~~~~R~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   75 (370)
                      .+++..++||....+.|..... .+      .-...+.|......+                  +++    +.+.-++. 
T Consensus         7 ~lvaVgllWG~Tnplirrgs~g-~~~v~~~~~k~~~~lqe~~tl~l------------------~w~----Y~iPFllN-   62 (125)
T KOG4831|consen    7 KLVAVGLLWGATNPLIRRGSLG-WDKVKSSSRKIMIALQEMKTLFL------------------NWE----YLIPFLLN-   62 (125)
T ss_pred             HHHHHHHHHccccHHHHHHHhh-HhhccCchHHHHHHHHHHHHHHH------------------hHH----HHHHHHHH-
Confidence            3678889999999999997642 22      233334443332110                  111    11112222 


Q ss_pred             hHHHHHHHhhccccchhHHHHhhh-hHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHH
Q 017523           76 TANQNAYFEGLYLSSSTVASAMTN-LMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITM  141 (370)
Q Consensus        76 ~~~~~~~~~al~~~~~~~a~~i~~-~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll  141 (370)
                      --+..+||.-++..+.+.+..+.+ ++-.|+.+.+..+..|....+      .++|..+.++|..++
T Consensus        63 qcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   63 QCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence            223457777888888888888877 466667777776655555555      889999999998765

>PRK02237 hypothetical protein; Provisional

Probab=87.05  E-value=3.1  Score=32.04  Aligned_cols=46  Identities=13%  Similarity=0.113  Sum_probs=39.6

Q ss_pred             ecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          267 AMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       267 s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      +.+.-.-.+.+.++++.+-|++++...++|+++.++|..+..+.++
T Consensus        63 AAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~pR  108 (109)
T PRK02237         63 AAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAPR  108 (109)
T ss_pred             HHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecCC
Confidence            4456677788899999999999999999999999999988877553

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=83.68  E-value=1.4  Score=40.07  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhccCceeeecchhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhhee
Q 017523          246 ALAISFFLQAWCISERGPLFCAMFNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLW  309 (370)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~~s~~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~  309 (370)
                      |-..+..+.+.++..+.++...++...-.+|+.+++.-+++.+++..+|+|...+.+|++.+-.
T Consensus        95 ~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~  158 (372)
T KOG3912|consen   95 CDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS  158 (372)
T ss_pred             HHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence            3444555666777788888888888889999999999999999999999999999999988743

>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function

Probab=80.67  E-value=2.5  Score=32.45  Aligned_cols=44  Identities=16%  Similarity=0.176  Sum_probs=37.6

Q ss_pred             chhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheeccc
Q 017523          269 FNPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGKA  312 (370)
Q Consensus       269 ~~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~~  312 (370)
                      +.-.-.+.+.++++.+-|++|+...++|+++.++|..+..+.+|
T Consensus        63 YGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR  106 (107)
T PF02694_consen   63 YGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR  106 (107)
T ss_pred             hhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence            34455677889999999999999999999999999999887654

; GO: 0016020 membrane

>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional

Probab=80.16  E-value=39  Score=29.35  Aligned_cols=32  Identities=13%  Similarity=0.252  Sum_probs=22.7

Q ss_pred             HHHHHHHhcccchhhhHhHHHHHH--Hhhhhhee
Q 017523          278 TVLAGLFLDEEIFMGSLIGAFAVI--IGLYVVLW  309 (370)
Q Consensus       278 ~~~~~~~~~e~~~~~~~~G~~lI~--~g~~l~~~  309 (370)
                      -.+|..++.+..-+-++.|..|.+  +|......
T Consensus       133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La~  166 (198)
T PRK06638        133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLAR  166 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            446888888888888888888865  45444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	99.04
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.67
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.39
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.35

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=99.04  E-value=1.8e-10  Score=92.77  Aligned_cols=69  Identities=16%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             HHH-HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheecc
Q 017523          243 SGI-ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWGK  311 (370)
Q Consensus       243 ~gi-~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~~  311 (370)
                      .++ +++++|++|.+++++.+++++..+ ..+.|++++++++++|||++++.+++|.++|++|+++....+
T Consensus        35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            444 788999999999999999999998 899999999999999999999999999999999999987543

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.67  E-value=2e-07  Score=72.23  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             HHH-HHHHHHHHHHHHHhccCceeeecc-hhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHhhhhheec
Q 017523          243 SGI-ALAISFFLQAWCISERGPLFCAMF-NPLCTVIVTVLAGLFLDEEIFMGSLIGAFAVIIGLYVVLWG  310 (370)
Q Consensus       243 ~gi-~~~~~~~~~~~~l~~~~~~~~s~~-~~l~pv~a~~~~~~~~~e~~~~~~~~G~~lI~~g~~l~~~~  310 (370)
                      .++ +.++++.++.+++|+.+.+.+..+ ..+.|+++.+++++++||+++..+++|.++|+.|+++....
T Consensus        35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            344 778899999999999999999888 89999999999999999999999999999999999998654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.39  E-value=4.9e-07  Score=72.58  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             HHHHHHHhHHHHHHHhhccccchhHHHHh-hhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhhh
Q 017523           69 VASLIGVTANQNAYFEGLYLSSSTVASAM-TNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMALL  144 (370)
Q Consensus        69 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~~  144 (370)
                      +.+++...+.++++..++++.+++.+..+ ..+.|+++.++++++++|++++.      +++|+.+.++|++++...
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhcC
Confidence            56666678999999999999999999999 89999999999999999999999      999999999999998654

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.35  E-value=2.2e-06  Score=66.31  Aligned_cols=69  Identities=14%  Similarity=0.174  Sum_probs=63.2

Q ss_pred             HHHHHHHhHHHHHHHhhccccchhHHHHh-hhhHHHHHHHHHHHhcccccccccccccceeeehhhhhhhhHHHhh
Q 017523           69 VASLIGVTANQNAYFEGLYLSSSTVASAM-TNLMPAVTFVMAFIAGWEKVHNRSLRSIAKILGTIFCVGGAITMAL  143 (370)
Q Consensus        69 ~~g~~~~~~~~~~~~~al~~~~~~~a~~i-~~~~P~~~~lla~~~~~E~~~~~~~~~~~~~~g~~l~~~Gv~ll~~  143 (370)
                      +.+++...+.++++..++++.|.+.+..+ ..+.|+++.++++++++|++++.      |++|+.+.++|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            45666668899999999999999999999 78999999999999999999999      99999999999999854

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00