Citrus Sinensis ID: 017525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCFKPF
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEcccccccccHHHHHccccccEEEccccccccccccccccccEEEccccccccccHHHHHcccccEEcccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHccccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccccEEEEEcccccccccEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEccccccccEEcccccccccccEEEEEcccccccccccccccccccEEEEccHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHcccccccccccEEEEEEccccccccHHHHHccccEEEEEccccccccHHHHHHHHHEEEEcccccHHHccHHHHHHHHHHEEEccccccHHHccHHHHHcHHHcEEEEEcccccccccccccccccHHHHHHHHHHHHHHcEcEEEcccHHHHHHHHcHHHHHHHHHHHHHHHccccccccccccHHHHHHccEEEEEcccccEEEEEccccccccccccccccccEEEEEccccccccHHHEcccccEEEEcccHHHHHHccccccccccccccccccccHHHHEEEEcccHHHHHHccccccccccEEEEEEcccHHcccccccccccccEEEEEccHHHHHHcccccHHHHHHcccccccc
Coil and Loop (DISEMBL)
mtnhienlvespvcprlrtlFLSSNIFHRVNSDFFQSMASLRVLKwsysnpllfEISKVVSlqhldlshsrieslPIEFKCLVnlkclnleytygisrippkvisnlKILETLRMYECAalpqardsilfGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLgscmpqyvstpslclshfnnskslgvFSLASLRHLQTLQLTYndldeikidnggeVKRVLEISGfhslknvyisrskfrhatwlflapnlkrveidNCQDMKEIidsekfgevpAEVMANLIPFARLERLILEELKNLktvhskalpfphlkemsvdrcpllkklpldcnrglerkIVIKGQRRWWNElqwddeatqnaflpcfkpf
Flexible Loop (DISEMBL)
mtnhienlvespvcpRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYtygisrippkvISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTvhskalpfphlkemsvdrcpllkklpldcnrglerkivikgQRRWWNELQwddeatqnaflpcfkPF
Low Complexity Region (SEG)
MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRvlveellglehlsvFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCFKPF
Disordered region (IsUnstruct)
*******LVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCF***
Disordered Region (DISOPRED)
*TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD*RVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGG****VLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKF************PFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKL**************KGQRRWWNELQWDDEATQNAFLPCFKPF
Disordered Region (DISEMBL)
MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCFKPF
Disordered Region (DISPRO)
****IENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEK********MANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCFKP*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQWDDEATQNAFLPCFKPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	370	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.937	0.390	0.344	7e-40
Q8RXS5	888	Probable disease resistan	no	no	0.945	0.394	0.342	3e-36
Q9FLB4	874	Putative disease resistan	no	no	0.937	0.397	0.330	1e-33
Q9SH22	884	Probable disease resistan	no	no	0.905	0.378	0.325	3e-31
P60838	894	Probable disease resistan	no	no	0.932	0.385	0.341	5e-30
Q9SI85	893	Probable disease resistan	no	no	0.905	0.375	0.310	6e-30
Q940K0	889	Probable disease resistan	no	no	0.935	0.389	0.319	2e-29
Q9C8T9	898	Putative disease resistan	no	no	0.932	0.384	0.321	5e-29
Q8L3R3	885	Disease resistance protei	no	no	0.918	0.384	0.324	6e-29
O82484	892	Putative disease resistan	no	no	0.929	0.385	0.331	7e-29

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  164 bits (416), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 129/374 (34%), Positives = 200/374 (53%), Gaps = 27/374 (7%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS---NPLLFEIS 57
           M N IE + +S  C  L TLFL  N   +++++FF+ M  L VL  S +   N L  EIS
Sbjct: 525 MNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEIS 584

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
           ++ SL++ +LS++ I  LP+    L  L  LNLE+   +  I    ISNL  L TL +  
Sbjct: 585 ELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG--ISNLWNLRTLGL-- 640

Query: 118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
                  RDS L  D   LV+EL  LEHL V T+ +++    + LL  C  + V      
Sbjct: 641 -------RDSRLLLDMS-LVKELQLLEHLEVITLDISSSLVAEPLL--CSQRLVECIKEV 690

Query: 178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID---NGGEVKRVLEISGFHSLKNV 234
              +   +S+ V +L ++ +L+ L +    + EIKI+   +     +      F +L  V
Sbjct: 691 DFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRV 750

Query: 235 YISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
           +I++    +  TWL  APNL  +E+   +++++II  EK      E  A ++PF +LE L
Sbjct: 751 FIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEK----AEEHSATIVPFRKLETL 806

Query: 294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL--ERKIVIKGQRRWWNE 351
            L EL+ LK +++KAL FP LK + V++C  L+KLPLD   G+  E  ++  G+R W   
Sbjct: 807 HLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIER 866

Query: 352 LQWDDEATQNAFLP 365
           ++W+D+ATQ  FLP
Sbjct: 867 VEWEDQATQLRFLP 880

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  152 bits (384), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 129/377 (34%), Positives = 195/377 (51%), Gaps = 27/377 (7%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF---EIS 57
           M N+IE++ ++P  P+L TL L  N    ++S FF+ M  L VL  S +  L     EIS
Sbjct: 519 MFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEIS 578

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
           + VSLQ+L LS +RI   P     L  L  LNLEYT  +  I    IS L  L+ LR++ 
Sbjct: 579 ECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLF- 635

Query: 118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
            +  P+  D  +  + ++L         L + +I L  F + QRL  SC      T +L 
Sbjct: 636 VSGFPE--DPCVLNELQLLENLQTLTITLGLASI-LEQFLSNQRL-ASC------TRALR 685

Query: 178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV---LEISGFHSLKNV 234
           + + N   S+  F +A++  LQ L    +D+ EIK+     V  +      + F +L  V
Sbjct: 686 IENLNPQSSVISF-VATMDSLQELHFADSDIWEIKVKRNETVLPLHIPTTTTFFPNLSQV 744

Query: 235 YISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
            +   ++ R  TWL  APNL  + + +  D+KE+I+ EK  +       NLIPF  L+ L
Sbjct: 745 SLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEKAEQ------QNLIPFQELKEL 798

Query: 294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQ 353
            LE ++ LK +H   LPFP L+++ V+ C  L+KLPL+        +VI+  ++W   L+
Sbjct: 799 RLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEILE 858

Query: 354 WDDEATQNAFLPCFKPF 370
           W+DEAT+  FLP  K F
Sbjct: 859 WEDEATKARFLPTLKAF 875

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/375 (33%), Positives = 186/375 (49%), Gaps = 28/375 (7%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI---SKV 59
           N IE   ES  CP+L TL L  N   +++ +F   +  L VL  S  NP L E+   S +
Sbjct: 515 NQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSL-NPNLIELPSFSPL 573

Query: 60  VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
            SL+ L+LS + I SLP     L NL  LNLE+TY + RI    I +L  LE L++Y  A
Sbjct: 574 YSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLY--A 629

Query: 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSC-MPQYVSTPSLCL 178
           +     D         LV ++  ++HL + TITL N    +  LG      Y  T  L L
Sbjct: 630 SGIDITDK--------LVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSY--TEGLTL 679

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID----NGGEV--KRVLEISGFHSLK 232
              +  +SL V  LA++   + L++  + + +I+I+    N  E+   RV     F +L+
Sbjct: 680 DEQSYYQSLKV-PLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLR 738

Query: 233 NVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEV-MANLIPFARL 290
            V +   +  +  TWL  AP+L  + +    D++ II   +   +     +A +IPF  L
Sbjct: 739 KVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFREL 798

Query: 291 ERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWN 350
           E L L  L  LK+++   L F  LKE+++  CP L KLPLD     ++ +VI  +  W  
Sbjct: 799 EFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQ 858

Query: 351 ELQWDDEATQNAFLP 365
            LQW+D AT+  F P
Sbjct: 859 GLQWEDVATKERFFP 873

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 202/384 (52%), Gaps = 49/384 (12%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIF-------HRVNSDFFQSMASLRVLKWSYSNPLL 53
           M N I +LV S  C  L TL L    +         ++S+FF  M  L VL  S++  L 
Sbjct: 523 MENKIHHLVGSYECMELTTLLLGKREYGSIRSQLKTISSEFFNCMPKLAVLDLSHNKSLF 582

Query: 54  F---EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
               EIS +VSL++L+L ++ I  LP   + L  +  LNLEYT  +  I    IS+L  L
Sbjct: 583 ELPEEISNLVSLKYLNLLYTEISHLPKGIQELKKIIHLNLEYTRKLESITG--ISSLHNL 640

Query: 111 ETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQY 170
           + L+++  + LP   ++         V+EL  LEHL + T T++              Q+
Sbjct: 641 KVLKLFR-SRLPWDLNT---------VKELETLEHLEILTTTIDPR----------AKQF 680

Query: 171 VSTPSLCLSHFNNSKSLGVF--SLASL-RHLQTLQLTYNDLDEIKIDNGG--EVKRVLEI 225
           +S+  L LSH   S+ L ++  S++SL RHL++L ++ + L E +I +    E+K +  I
Sbjct: 681 LSSHRL-LSH---SRLLEIYGSSVSSLNRHLESLSVSTDKLREFQIKSCSISEIK-MGGI 735

Query: 226 SGFHSLKNVYISRSK-FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL 284
             F SL +V I   +  R  T+L  AP ++ + + + +D+++II+ EK  E      + +
Sbjct: 736 CNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEE---SGI 792

Query: 285 IPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERK---IV 341
           +PF  L  L L +L  LK ++ + LPF  L+E+++  CP L+KLPLD   G + +   I+
Sbjct: 793 LPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCII 852

Query: 342 IKGQRRWWNELQWDDEATQNAFLP 365
                RW+  ++W DEAT+  FLP
Sbjct: 853 RNKDSRWFEGVKWADEATKKRFLP 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 208/386 (53%), Gaps = 41/386 (10%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSNPLLF---E 55
           M N IE L  SP C  L TLFL  N  + H ++ +FF+ +  L VL  S ++ L     +
Sbjct: 524 MENEIEILSGSPECLELTTLFLQKNDSLLH-ISDEFFRCIPMLVVLDLSGNSSLRKLPNQ 582

Query: 56  ISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           ISK+VSL++LDLS + I+ LP+  + L  L+ L L+Y   +     K IS +  + +LR 
Sbjct: 583 ISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDYMKRL-----KSISGISNISSLRK 637

Query: 116 YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS 175
            +   L Q++ S+       LVEEL  LEHL V  I++ +    ++LL +  P+ V    
Sbjct: 638 LQ---LLQSKMSLDMS----LVEELQLLEHLEVLNISIKSSLVVEKLLNA--PRLVKCLQ 688

Query: 176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG-------- 227
           + +      +S GV +L  + +L  + +    + EIKI+     ++ L +S         
Sbjct: 689 ILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKIE-----RKTLSLSSNRSPKTQF 743

Query: 228 FHSLKNVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP 286
            H+L  V+IS     +  TWL  APNL  +E+ + + ++ II+ EK     A  M+ +IP
Sbjct: 744 LHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEK-----AMTMSGIIP 798

Query: 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL-ERKIVIKGQ 345
           F +LE L L  L  L++++ + L FP LK + + +CP L+KLPLD    + + ++VIK Q
Sbjct: 799 FQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIKYQ 858

Query: 346 RRWWNE-LQWDDEATQNAFLPCFKPF 370
              W E ++WD+EAT+  FLP FK F
Sbjct: 859 EEEWLERVEWDNEATRLRFLPFFKFF 884

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 196/386 (50%), Gaps = 51/386 (13%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIF---------HRVNSDFFQSMASLRVLKWSYSNP 51
           M N I +LV S  C  L TL L    +           ++S+FF  M  L VL  S++  
Sbjct: 523 MGNKIHHLVGSYECMELTTLLLGEGEYGSIWRWSEIKTISSEFFNCMPKLAVLDLSHNQS 582

Query: 52  LLF---EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLK 108
           L     EIS +VSL++L+LSH+ I  L    + L  +  LNLE+T  +  I    IS+L 
Sbjct: 583 LFELPEEISNLVSLKYLNLSHTGIRHLSKGIQELKKIIHLNLEHTSKLESIDG--ISSLH 640

Query: 109 ILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMP 168
            L+ L++Y  + LP   ++         V+EL  LEHL + T T++              
Sbjct: 641 NLKVLKLY-GSRLPWDLNT---------VKELETLEHLEILTTTIDPR----------AK 680

Query: 169 QYVSTPSLCLSHFNNSKSLGVFS---LASLRHLQTLQLTYNDLDEIKID--NGGEVKRVL 223
           Q++S+  L     + S+ L +F     +  R L++L ++ + L E +I   +  E+K + 
Sbjct: 681 QFLSSHRL----MSRSRLLQIFGSNIFSPDRQLESLSVSTDKLREFEIMCCSISEIK-MG 735

Query: 224 EISGFHSLKNVYISRSK-FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA 282
            I  F SL +V I   +  R  T+L  AP L+ + + + +D+++II+ EK  E      +
Sbjct: 736 GICNFLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEGED---S 792

Query: 283 NLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERK--- 339
            ++PF  L+ L L++L  LK ++ + LPF  L+++++  CP L+KLPLD   G + +   
Sbjct: 793 GIVPFPELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGC 852

Query: 340 IVIKGQRRWWNELQWDDEATQNAFLP 365
           I+     RW   ++W DEAT+  FLP
Sbjct: 853 IIHYKDSRWLKGVKWADEATKKRFLP 878

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940K0|DRL15_ARATH Probable disease resistance protein At1g61180 OS=Arabidopsis thaliana GN=At1g61180 PE=2 SV=2

 Score =  130 bits (327), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 122/382 (31%), Positives = 182/382 (47%), Gaps = 36/382 (9%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS---NPLLFEIS 57
           M N IE +     C  L TLFL SN    +   F + M  L VL  SY+   N L  +IS
Sbjct: 519 MDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQIS 578

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
            +VSLQ LDLS++ IE +PI  K L  L  L+L YT  +  I             +    
Sbjct: 579 GLVSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTYTDRLCSI-----------SGISRLL 627

Query: 118 CAALPQARDSILFGDCRVL-VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
              L +   S + GD  VL   + L        T++       QRL      + +S  +L
Sbjct: 628 SLRLLRLLGSKVHGDASVLKELQQLQNLQELAITVSAELISLDQRL-----AKLIS--NL 680

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG----FHSLK 232
           C+  F   K   +  LAS+ +L +L++  +   EIK          L I+     F +L 
Sbjct: 681 CIEGFLQ-KPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLS 739

Query: 233 NVYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLE 291
            + I +    +  TW+  APNL  + I++ +++ EII+ EK     A  + ++ PF +LE
Sbjct: 740 RLEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEK-----ATNLTSITPFLKLE 794

Query: 292 RLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC---NRGLERKIVIKGQRRW 348
            LIL  L  L++++   LPFP L  M V  CP L+KLPL+    ++  E +I +      
Sbjct: 795 WLILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQ 854

Query: 349 WNELQWDDEATQNAFLPCFKPF 370
            NEL+W+D+ T+N FLP  KP+
Sbjct: 855 ENELEWEDDDTKNRFLPSIKPY 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  129 bits (323), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 122/380 (32%), Positives = 188/380 (49%), Gaps = 35/380 (9%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWS---YSNPLLFEIS 57
           M N+I +L     C  L TL L S    +++S+FF SM  L VL  S   Y + L   IS
Sbjct: 523 MKNNIAHLDGRLDCMELTTLLLQSTHLEKISSEFFNSMPKLAVLDLSGNYYLSELPNGIS 582

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGI-SRIPPKVISNLKILETLRMY 116
           ++VSLQ+L+LS + I  LP   + L  L  L LE T  + S +    + NLK+L+     
Sbjct: 583 ELVSLQYLNLSSTGIRHLPKGLQELKKLIHLYLERTSQLGSMVGISCLHNLKVLK----L 638

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
             ++     D+         V+EL  LEHL V T T+++       LG+   Q++S+  L
Sbjct: 639 SGSSYAWDLDT---------VKELEALEHLEVLTTTIDDC-----TLGT--DQFLSSHRL 682

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDN--GGEVKRVLEISGFHSLKNV 234
            +S     K     +        +L +T + L E  I++    E+K +  I  F SL  V
Sbjct: 683 -MSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTIEHCHTSEIK-MGRICSFSSLIEV 740

Query: 235 YISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
            +S   + R  T+L  APNLKR+ + +   +++II+ EK  +      + ++PF +L  L
Sbjct: 741 NLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEKAHDGEK---SGIVPFPKLNEL 797

Query: 294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERK---IVIKGQRRWWN 350
            L  L+ LK ++   LPFP L++++V  CP LKKLPLD   G       I+   +  W  
Sbjct: 798 HLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWIT 857

Query: 351 ELQWDDEATQNAFLPCFKPF 370
            ++W+DEAT+  FL     F
Sbjct: 858 RVEWEDEATKTRFLANRSSF 877

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  128 bits (322), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 124/382 (32%), Positives = 187/382 (48%), Gaps = 42/382 (10%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNI-FHRVNSDFFQSMASLRVLKWSYSNPLLF---EI 56
           M N+ E ++ SP C  L TLFL +N     ++ +FF+ M SL VL  S ++ L     EI
Sbjct: 524 MNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEI 583

Query: 57  SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           S++VSLQ+LDLS + IE LP     L  L  L LE T  +  I    IS L  L TLR+ 
Sbjct: 584 SELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISG--ISYLSSLRTLRL- 640

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGS--CMPQYVSTP 174
                   RDS    D  ++ E  L      + T   +       L+G   C P+     
Sbjct: 641 --------RDSKTTLDTGLMKELQLLEHLELITTDISSG------LVGELFCYPRV---- 682

Query: 175 SLCLSHF-------NNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG 227
             C+ H           +S+GV  L ++ +L  + +    + EI I+     K+ L    
Sbjct: 683 GRCIQHIYIRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEK-TPWKKNLTNPN 741

Query: 228 FHSLKNVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP 286
           F +L NV I      +  TWL  APNL  + +  C+ +++II  EK   V   +   ++P
Sbjct: 742 FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASV---LEKEILP 798

Query: 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSV-DRCPLLKKLPLDCNR--GLERKIVIK 343
           F +LE L L +L  LK+++  ALPF  L+ + + + CP L+KLPLD      +E  ++  
Sbjct: 799 FQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKY 858

Query: 344 GQRRWWNELQWDDEATQNAFLP 365
            +++W   ++W+DEATQ  FLP
Sbjct: 859 KEKKWIERVEWEDEATQYRFLP 880

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82484|DRL23_ARATH Putative disease resistance protein At4g10780 OS=Arabidopsis thaliana GN=At4g10780 PE=2 SV=1

 Score =  128 bits (321), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 129/389 (33%), Positives = 198/389 (50%), Gaps = 45/389 (11%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSNPLLF---E 55
           M N IE +  SP CP L TLFL  N  + H ++ +FF+ M  L VL  S ++ L     +
Sbjct: 522 MNNGIEEISGSPECPELTTLFLQENKSLVH-ISGEFFRHMRKLVVLDLSENHQLDGLPEQ 580

Query: 56  ISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           IS++V+L++LDLSH+ IE LP   + L  L  LNLE    +  I    IS L  L TL +
Sbjct: 581 ISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGL 638

Query: 116 YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGS-----CMPQY 170
                    R+S +  D  + V+EL  LEHL + TI + +    ++++ +     CM Q 
Sbjct: 639 ---------RNSNIMLDV-MSVKELHLLEHLEILTIDIVSTMVLEQMIDAGTLMNCM-QE 687

Query: 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG--- 227
           VS   L      ++K      L ++  L++L +   ++ EI      E++R+   +    
Sbjct: 688 VSIRCLIYDQEQDTK----LRLPTMDSLRSLTMWNCEISEI------EIERLTWNTNPTS 737

Query: 228 --FHSLKNVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL 284
             F +L  V I   S  +  TWL  APN+  + I+  + ++E+I   K   V  E    L
Sbjct: 738 PCFFNLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQL 797

Query: 285 ---IPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRG-LERKI 340
              IPF +L+ L L  L  LK+++  +L FP L  + V+RCP L+KLPLD   G + +K 
Sbjct: 798 HKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKF 857

Query: 341 VIK-GQRRWWNELQWDDEATQNAFLPCFK 368
           V++  +  W   ++W DEAT+  FLP  K
Sbjct: 858 VLQYKETEWIESVEWKDEATKLHFLPSTK 886

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
24461866	890	NBS-LRR type disease resistance protein	0.975	0.405	0.505	4e-83
24461865	892	NBS-LRR type disease resistance protein	0.978	0.405	0.482	4e-75
24461861	890	NBS-LRR type disease resistance protein	0.967	0.402	0.472	9e-70
24461863	889	NBS-LRR type disease resistance protein	0.972	0.404	0.432	1e-66
359482672	905	PREDICTED: probable disease resistance p	0.991	0.405	0.420	4e-64
225442867	893	PREDICTED: probable disease resistance p	0.967	0.400	0.421	3e-63
24461864	899	NBS-LRR type disease resistance protein	0.962	0.395	0.424	2e-61
225443158	903	PREDICTED: probable disease resistance p	0.991	0.406	0.411	2e-60
147852651	882	hypothetical protein VITISV_017542 [Viti	0.913	0.383	0.406	3e-60
359482674	991	PREDICTED: probable disease resistance p	0.956	0.357	0.414	3e-60

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  314 bits (805), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 189/374 (50%), Positives = 243/374 (64%), Gaps = 13/374 (3%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISK 58
           M N I NL E   CP L TLFL+ N    +++DFF+ M SL+VL  + S+   L   ISK
Sbjct: 521 MHNQITNLSEVATCPHLLTLFLNENELQMIHNDFFRFMPSLKVLNLADSSLTNLPEGISK 580

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSLQHLDLS S IE LP+E K LVNLKCLNLEYT+ ++ IP ++ISNL  L  LRM+  
Sbjct: 581 LVSLQHLDLSKSSIEELPLELKALVNLKCLNLEYTWSLTTIPRQLISNLSRLHVLRMFAA 640

Query: 119 A--ALPQA-RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS 175
           +  A  +A  DSILFG   ++VEELLGL++L V + TL + H  Q  L S   +   T +
Sbjct: 641 SHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSC-TRA 699

Query: 176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEISGFHSLKNV 234
           L L  FN+S SL V +LA L+ L  L +T    L+E+K+D   EV++ +    FHSLK V
Sbjct: 700 LLLQCFNDSTSLEVSALADLKQLNRLWITECKKLEELKMDYTREVQQFV----FHSLKKV 755

Query: 235 YI-SRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
            I + SK +  T+L  APNL+ +E+  C  M+E++   KF EVP EV+ANL PFA+L+ L
Sbjct: 756 EILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVP-EVVANLNPFAKLQNL 814

Query: 294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQ 353
            L    NLK+++ K LPFPHLK MS   C  LKKLPLD N   ER IVI G RRWW +L+
Sbjct: 815 KLFGATNLKSIYWKPLPFPHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWEQLE 874

Query: 354 WDDEATQNAFLPCF 367
           W DEAT+NAFLPCF
Sbjct: 875 WVDEATRNAFLPCF 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 181/375 (48%), Positives = 235/375 (62%), Gaps = 13/375 (3%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS--NPLLFEISK 58
           M N I NL E P CP L TL L+ N   ++ + FFQ M SL+VL  S+     L   IS+
Sbjct: 522 MQNQIRNLSEIPTCPHLLTLLLNENNLRKIQNYFFQFMPSLKVLNLSHCELTKLPVGISE 581

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSLQHLDLS S IE  P E K LVNLKCL+LEYT  +  IP ++ISNL  L  LRM+  
Sbjct: 582 LVSLQHLDLSESDIEEFPGELKALVNLKCLDLEYTRNLITIPRQLISNLSRLRVLRMFGA 641

Query: 119 A--ALPQA-RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS 175
           +  A  +A  +SILFG   ++VEELLGL+HL V T+TL + +  Q  L S   +   T +
Sbjct: 642 SHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSC-TQA 700

Query: 176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSLKNV 234
           L L HF +S SL V +LA L+ L  LQ+  +  L+E+K+D   EV++      F SL  V
Sbjct: 701 LLLQHFKDSTSLEVSALADLKQLNRLQIANSVILEELKMDYAEEVQQF----AFRSLNMV 756

Query: 235 YISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
            I    + +  T+L  APNLK +++  C  M+EI    KF EVP EVMANL PF +L+ L
Sbjct: 757 EICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVP-EVMANLNPFEKLQNL 815

Query: 294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQ 353
            +   +NLK+++ K+LPFPHLK MS   C  LKKLPLD N   ERKIVI G+R W  +LQ
Sbjct: 816 EVAGARNLKSIYWKSLPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWREQLQ 875

Query: 354 WDDEATQNAFLPCFK 368
           W+DEAT+NAFL CF+
Sbjct: 876 WEDEATRNAFLRCFR 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  270 bits (690), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 179/379 (47%), Positives = 234/379 (61%), Gaps = 21/379 (5%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSNPLL---FEI 56
           M N IENL E P CP L TLFL+S+ I  R+NSDF QSM  L+VL  S    LL     I
Sbjct: 523 MENQIENLSEVPTCPHLLTLFLNSDDILWRINSDFLQSMLRLKVLNLSRYMGLLVLPLGI 582

Query: 57  SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           SK+VSL++LDLS S I  +P E K LVNLKCLNLEYT  + +IP ++ISN   L  LRM+
Sbjct: 583 SKLVSLEYLDLSTSLISEIPEELKALVNLKCLNLEYTGRLLKIPLQLISNFSRLHVLRMF 642

Query: 117 ECAALPQAR---DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
             A         +S+LFG   +LVEELLGL+HL V ++TL +  A Q  L S M +   T
Sbjct: 643 GNAYFSYGNYPIESVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSC-T 701

Query: 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLT-YNDLDEIKIDNGGEVKRVLEISGFHSLK 232
            ++ L  F  S S+ V  LA L+ L+ L+++   +L E+KID  GEV+R     GFHSL+
Sbjct: 702 RAMLLQDFQGSTSVDVSGLADLKRLKRLRISDCYELVELKIDYAGEVQRY----GFHSLQ 757

Query: 233 NVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLE 291
           +  ++  SK +  T L L PNLK +E+ +C+ M+EII   +F   P         FA+L+
Sbjct: 758 SFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEAMEEIISVGEFAGNPN-------AFAKLQ 810

Query: 292 RLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNE 351
            L +  L NLK+++ K LPFP L+E++V  C  LKKLPLD N   E KIVI+G   WW  
Sbjct: 811 YLGIGNLPNLKSIYWKPLPFPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWRN 870

Query: 352 LQWDDEATQNAFLPCFKPF 370
           LQW+DEATQNAFL CF+  
Sbjct: 871 LQWEDEATQNAFLSCFQSL 889

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/386 (43%), Positives = 228/386 (59%), Gaps = 26/386 (6%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNI-FHRVNSDFFQSMASLRVLKWSYSNPLL-----F 54
           M N I+ L E P CP L TLFL+SN    R+   FF+ M SL+VLK S+   L       
Sbjct: 513 MQNDIKILSEVPTCPDLHTLFLASNNNLQRITDGFFKFMPSLKVLKMSHCGDLKVLKLPL 572

Query: 55  EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114
            +S + SL+ LD+S + I  LP E K LVNLKCLNL +   +S+IP ++ISN   L  LR
Sbjct: 573 GMSMLGSLELLDISQTSIGELPEELKLLVNLKCLNLRWATWLSKIPRQLISNSSRLHVLR 632

Query: 115 MYE--CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-----LGSCM 167
           M+   C+    + DS+LFG   VL++ELLGL++L V  +TL + HA Q       L SC+
Sbjct: 633 MFATGCSHSEASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSCI 692

Query: 168 PQYVSTPSLCLSHFNNSKSL-GVFSLASLRHLQTLQL-TYNDLDEIKIDNGGEVKRVLEI 225
                  SL L     +KS+    + A L HL  L++ +  +++E+KID    V++  E 
Sbjct: 693 R------SLLLDEVRGTKSIIDATAFADLNHLNELRIDSVAEVEELKIDYTEIVRKRREP 746

Query: 226 SGFHSLKNVYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL 284
             F SL  V + +  K +  T+L  APNLK +++ NC+ M+EII   KF EVP EVM ++
Sbjct: 747 FVFGSLHRVTLGQCLKLKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAEVP-EVMGHI 805

Query: 285 IPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKG 344
            PF  L+RL L +L  LK+++ K LPF HLKEM V  C  LKKLPLD N     K VI+G
Sbjct: 806 SPFENLQRLHLFDLPRLKSIYWKPLPFTHLKEMRVHGCNQLKKLPLDSNSA---KFVIRG 862

Query: 345 QRRWWNELQWDDEATQNAFLPCFKPF 370
           +   WN LQW+D+ATQ AF  CF+P+
Sbjct: 863 EAEGWNRLQWEDDATQIAFRSCFQPY 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/385 (42%), Positives = 226/385 (58%), Gaps = 18/385 (4%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISK 58
           M N IE L  SP CP L TLFL+ N    ++  FFQ M SLRVL  S ++   L   IS 
Sbjct: 520 MDNQIEELTGSPKCPNLSTLFLADNSLKMISDTFFQFMPSLRVLDLSKNSITELPRGISN 579

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSLQ+L+LS + I+ LPIE K L  LKCL L     +S IP ++IS+L +L+ + M+  
Sbjct: 580 LVSLQYLNLSQTNIKELPIELKNLDKLKCLVLVDMPQLSSIPEQLISSLSMLQVIDMFNS 639

Query: 119 AALPQA--RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
               +   +D IL  D   LV+EL  L++L    +++ +  AF+RLL S     +    L
Sbjct: 640 GISERTVLKDGILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSS-YKLRICISGL 698

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEIS--------- 226
           CL +FN S SL + SL++ + L +L ++    L++++ID  GE K  +E +         
Sbjct: 699 CLKNFNGSSSLNLTSLSNAKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSH 758

Query: 227 -GFHSLKNVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL 284
             FHSL  + I R S+ +  TWL   PNLK + I +C  M+E+I + K GE  AE   NL
Sbjct: 759 NSFHSLVWLGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGE-SAENGENL 817

Query: 285 IPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKG 344
            PF +L+ L L++L  LK++  KALPF +L  + V  CPLLKKLPL  N     +IVI G
Sbjct: 818 SPFVKLQVLELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAG 877

Query: 345 QRRWWNELQWDDEATQNAFLPCFKP 369
             +WWNE++W+DEATQN FLPCF P
Sbjct: 878 HNKWWNEVEWEDEATQNVFLPCFVP 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  248 bits (633), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 162/384 (42%), Positives = 221/384 (57%), Gaps = 26/384 (6%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS--NPLLFEISK 58
           + N IE L  SP CP L TLFL  N    +   FFQ M +LRVL  S +    L   IS 
Sbjct: 520 IGNQIEKLTGSPNCPNLSTLFLQDNSLKMITDSFFQFMPNLRVLDLSRNAMTELPQGISN 579

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSLQ+L+LS + I+ LPIE K L  LK L L +   +S IP ++IS+L +L+ + M+ C
Sbjct: 580 LVSLQYLNLSQTNIKELPIELKNLGKLKFL-LLHRMRLSSIPEQLISSLSMLQVIDMFNC 638

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
                    I  GD   LVEEL  L++L    +T+ +  AF+RLL S   +   +  +CL
Sbjct: 639 G--------ICDGD-EALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCIS-GVCL 688

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEI----------SG 227
            +FN S SL + SL +++ L+ L ++     ++++ID   E K   E           S 
Sbjct: 689 ENFNGSSSLNLTSLCNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSS 748

Query: 228 FHSLKNVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP 286
           FH+L  + + R S+ +  TWL  APNLK + I +C  M+EII + K GE   E   NL P
Sbjct: 749 FHNLSWLRVKRCSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGE-STENGENLSP 807

Query: 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQR 346
           F +L+ L LE+L  LK++  KALPF +L  + VD CPLLKKLPLD N   E +IVI GQ 
Sbjct: 808 FVKLQVLTLEDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQT 867

Query: 347 RWWNELQWDDEATQNAFLPCFKPF 370
            W+NEL W++EAT NAFLPCF P 
Sbjct: 868 EWFNELDWENEATHNAFLPCFVPI 891

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/379 (42%), Positives = 216/379 (56%), Gaps = 23/379 (6%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNI-FHRVNSDFFQSMASLRVLKWSYSNPLL---FEI 56
           M   I NL E P C  L TLFL  N     +  DFF+SM  L+VL  S +  +      +
Sbjct: 530 METQIRNLSEVPTCLHLLTLFLVFNEELEMITGDFFKSMPCLKVLNLSGARRMSSFPLGV 589

Query: 57  SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           S +VSLQHLDLS + I+ LP E   L NLK LNL+ T+ +  IP ++IS    L  LRM+
Sbjct: 590 SVLVSLQHLDLSGTAIQELPKELNALENLKSLNLDQTHYLITIPRQLISRFSCLVVLRMF 649

Query: 117 ECAAL-PQAR--DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
                 P  +  DS LF    +LVE L GL+HL V ++TLNN    Q +L S       T
Sbjct: 650 GVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNS-EKLRSCT 708

Query: 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQL-TYNDLDEIKIDNGGEVKRVLE---ISGFH 229
            +L L  F  S+ L V +LA L HL  L +    +L+E+K+     V + LE   I G H
Sbjct: 709 QALYLHSFKRSEPLDVSALAGLEHLNRLWIHECEELEELKMARQPFVFQSLEKIQIYGCH 768

Query: 230 SLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFAR 289
            LKN+          T+L  APNLK +E+ +C  M+EII   KF + P EVM  + PFA+
Sbjct: 769 RLKNL----------TFLLFAPNLKSIEVSSCFAMEEIISEVKFADFP-EVMPIIKPFAQ 817

Query: 290 LERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWW 349
           L  L L  L  LK+++ + LPFP L++++V+ C  L+KLPLD N   ERKIVI+G  +WW
Sbjct: 818 LYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWW 877

Query: 350 NELQWDDEATQNAFLPCFK 368
            +LQW+D+ TQNAF PCF+
Sbjct: 878 EQLQWEDQDTQNAFRPCFR 896

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443158|ref|XP_002263674.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 159/386 (41%), Positives = 221/386 (57%), Gaps = 19/386 (4%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVL--KWSYSNPLLFEISK 58
           M+NHIE L + P CP L TLFL++N    +   FFQ M  L+VL   WS  + L  EI +
Sbjct: 521 MSNHIEKLTQVPTCPNLLTLFLNNNSLEVITDGFFQLMPRLQVLNLSWSRVSELPTEIFR 580

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSL++LDLS + I  LP EFK LVNLK LNL+YT  +  IP  V+S++  L+ L+M+ C
Sbjct: 581 LVSLRYLDLSWTCISHLPNEFKNLVNLKYLNLDYTQQLGIIPRHVVSSMSRLQVLKMFHC 640

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
                  D++L      LV EL  L +L    IT+ +  A QR L S   +   T  L L
Sbjct: 641 GFYGVGEDNVLSDGNEALVNELECLNNLCDLNITIRSASALQRCLCSEKIEGC-TQDLFL 699

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQL----TYNDLDEIKIDNGGEV---------KRVLEI 225
             FN   SL +  L +++ L TL +    T  DL+    D G E+          ++  +
Sbjct: 700 QFFNGLNSLDISFLENMKRLDTLHISDCATLADLNINGTDEGQEILTSDNYLDNSKITSL 759

Query: 226 SGFHSLKNVYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL 284
             FHSL++V I R    +  TWL  APNL  + I  C++++++IDS K+  V A    N+
Sbjct: 760 KNFHSLRSVRIERCLMLKDLTWLVFAPNLVNLWIVFCRNIEQVIDSGKW--VEAAEGRNM 817

Query: 285 IPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKG 344
            PFA+LE LIL +L  LK+++   L FP LKE+ V  CP LKKLPL+ N    R +VI G
Sbjct: 818 SPFAKLEDLILIDLPKLKSIYRNTLAFPCLKEVRVHCCPKLKKLPLNSNSAKGRGMVIYG 877

Query: 345 QRRWWNELQWDDEATQNAFLPCFKPF 370
           ++ W NEL+W+DEA  NAFLPCF+ +
Sbjct: 878 EKDWRNELEWEDEAAHNAFLPCFRSW 903

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/384 (40%), Positives = 217/384 (56%), Gaps = 46/384 (11%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISK 58
           M N IE L  SP+CP L TLFL  N    +   FFQ M +LRVL  S ++   L  EIS 
Sbjct: 520 MNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMPNLRVLDLSDNSITELPREISN 579

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSL++LDLS + I+ LPIE K L NLKCL L +   +S +P ++IS+L +L+ + M++C
Sbjct: 580 LVSLRYLDLSFTEIKELPIELKNLGNLKCLLLSFMPQLSSVPEQLISSLLMLQVIDMFDC 639

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
                    I  GD   LVEEL  L++L   ++T+ +  AF+RLL S           C+
Sbjct: 640 G--------ICDGD-EALVEELESLKYLHDLSVTITSTSAFKRLLSS------DKLRSCI 684

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEIS----------G 227
           S                R L+ L ++    L++++ID  GE K+ +E +           
Sbjct: 685 S----------------RRLRNLFISNCGSLEDLEIDWVGEGKKTVESNYLNSKVSSHNS 728

Query: 228 FHSLKNV-YISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP 286
           FHSL+ +  +S S+ +  TW+  APNLK + I +C  M+E+I + K  E  AE   NL P
Sbjct: 729 FHSLEALTVVSCSRLKDLTWVAFAPNLKVLTIIDCDQMQEVIGTRKSDE-SAENGENLGP 787

Query: 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQR 346
           FA+L+ L L  L  LK++  KALP  +L  + V  CPLLKKLPL+ N     +IVI GQ 
Sbjct: 788 FAKLQVLHLVGLPQLKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAKGHRIVISGQT 847

Query: 347 RWWNELQWDDEATQNAFLPCFKPF 370
            WWNE++W+DEAT NAFLPCF P 
Sbjct: 848 EWWNEVEWEDEATHNAFLPCFVPI 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  238 bits (607), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 219/379 (57%), Gaps = 25/379 (6%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISK 58
           M N IE L  SP+CP L TLFL  N    +   FFQ M +LRVL  S ++   L   IS 
Sbjct: 520 MNNQIEKLTGSPICPNLSTLFLRENSLKMITDSFFQFMPNLRVLDLSDNSITELPQGISN 579

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
           +VSL++LDLS + I+ LPIE K L NLKCL L     +S IP ++IS+L +L+ + M  C
Sbjct: 580 LVSLRYLDLSLTEIKELPIELKNLGNLKCLLLSDMPQLSSIPEQLISSLLMLQVIDMSNC 639

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
                    I  GD   LVEEL  L++L    +T+ +  AF+RLL S   +   + S+CL
Sbjct: 640 G--------ICDGD-EALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCIS-SVCL 689

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEIS----------G 227
            +FN S SL + SL ++++L  L ++    L+ + ID   E K+  E +           
Sbjct: 690 RNFNGSSSLNLTSLCNVKNLCELSISNCGSLENLVIDWAWEGKKTTESNYLNSKVSSHNS 749

Query: 228 FHSLKNVYI-SRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP 286
           FHSL+ V I S S+ +  TW+  APNLK + I +C  M+E+I + K GE  AE   NL P
Sbjct: 750 FHSLEVVVIESCSRLKDLTWVAFAPNLKALTIIDCDQMQEVIGTGKCGE-SAENGENLSP 808

Query: 287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQR 346
           F +L+ L L++L  LK++  KALPF +L  + VD CPLLKKLPL+ N     +IVI GQ 
Sbjct: 809 FVKLQVLELDDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLNANSAKGHRIVISGQT 868

Query: 347 RWWNELQWDDEATQNAFLP 365
            WWN+++W+DE +Q    P
Sbjct: 869 EWWNKVEWEDELSQGTPGP 887

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.943	0.393	0.346	1.7e-38
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.937	0.390	0.320	5.2e-36
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.945	0.391	0.317	1.3e-34
TAIR|locus:2153474	874	AT5G05400 [Arabidopsis thalian	0.937	0.397	0.32	6.5e-33
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.940	0.393	0.320	6.7e-33
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.956	0.396	0.324	2.6e-30
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.556	0.233	0.331	4.7e-30
TAIR|locus:2197739	762	AT1G61300 [Arabidopsis thalian	0.456	0.221	0.326	3.3e-28
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.470	0.179	0.336	2.9e-27
TAIR|locus:2008440	899	AT1G61180 [Arabidopsis thalian	0.935	0.384	0.289	3.1e-23

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 421 (153.3 bits), Expect = 1.7e-38, P = 1.7e-38
 Identities = 131/378 (34%), Positives = 193/378 (51%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF---EIS 57
             M N+IE++ ++P  P+L TL L  N    ++S FF+ M  L VL  S +  L     EIS
Sbjct:   519 MFNNIESIRDAPESPQLITLLLRKNFLGHISSSFFRLMPMLVVLDLSMNRDLRHLPNEIS 578

Query:    58 KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
             + VSLQ+L LS +RI   P     L  L  LNLEYT  +  I    IS L  L+ LR++ 
Sbjct:   579 ECVSLQYLSLSRTRIRIWPAGLVELRKLLYLNLEYTRMVESICG--ISGLTSLKVLRLF- 635

Query:   118 CAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
              +  P+  D  +  + +               +I L  F + QRL  SC      T +L 
Sbjct:   636 VSGFPE--DPCVLNELQLLENLQTLTITLGLASI-LEQFLSNQRL-ASC------TRALR 685

Query:   178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEI----SGFHSLKN 233
             + + N   S+  F +A++  LQ L    +D+ EIK+    E    L I    + F +L  
Sbjct:   686 IENLNPQSSVISF-VATMDSLQELHFADSDIWEIKVKRN-ETVLPLHIPTTTTFFPNLSQ 743

Query:   234 VYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLER 292
             V +   ++ R  TWL  APNL  + + +  D+KE+I+ EK     AE   NLIPF  L+ 
Sbjct:   744 VSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVINKEK-----AE-QQNLIPFQELKE 797

Query:   293 LILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNEL 352
             L LE ++ LK +H   LPFP L+++ V+ C  L+KLPL+        +VI+  ++W   L
Sbjct:   798 LRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLPLNFTSVPRGDLVIEAHKKWIEIL 857

Query:   353 QWDDEATQNAFLPCFKPF 370
             +W+DEAT+  FLP  K F
Sbjct:   858 EWEDEATKARFLPTLKAF 875

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 5.2e-36, P = 5.2e-36
 Identities = 120/374 (32%), Positives = 190/374 (50%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYS---NPLLFEIS 57
             M N IE + +S  C  L TLFL  N   +++++FF+ M  L VL  S +   N L  EIS
Sbjct:   525 MNNEIEEIFDSHECAALTTLFLQKNDVVKISAEFFRCMPHLVVLDLSENQSLNELPEEIS 584

Query:    58 KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
             ++ SL++ +LS++ I  LP+    L  L  LNLE+   +  I    ISNL  L TL +  
Sbjct:   585 ELASLRYFNLSYTCIHQLPVGLWTLKKLIHLNLEHMSSLGSILG--ISNLWNLRTLGL-- 640

Query:   118 CAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
                    RDS L  D                 T+ +++    + LL  C  + V      
Sbjct:   641 -------RDSRLLLDM-SLVKELQLLEHLEVITLDISSSLVAEPLL--CSQRLVECIKEV 690

Query:   178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID---NGGEVKRVLEISGFHSLKNV 234
                +   +S+ V +L ++ +L+ L +    + EIKI+   +     +      F +L  V
Sbjct:   691 DFKYLKEESVRVLTLPTMGNLRKLGIKRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRV 750

Query:   235 YISRSK-FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL 293
             +I++    +  TWL  APNL  +E+   +++++II  EK      E  A ++PF +LE L
Sbjct:   751 FIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEK----AEEHSATIVPFRKLETL 806

Query:   294 ILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL--ERKIVIKGQRRWWNE 351
              L EL+ LK +++KAL FP LK + V++C  L+KLPLD   G+  E  ++  G+R W   
Sbjct:   807 HLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIER 866

Query:   352 LQWDDEATQNAFLP 365
             ++W+D+ATQ  FLP
Sbjct:   867 VEWEDQATQLRFLP 880

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 121/381 (31%), Positives = 196/381 (51%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSNPLLF---E 55
             M N IE L  SP C  L TLFL  N  + H ++ +FF+ +  L VL  S ++ L     +
Sbjct:   524 MENEIEILSGSPECLELTTLFLQKNDSLLH-ISDEFFRCIPMLVVLDLSGNSSLRKLPNQ 582

Query:    56 ISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
             ISK+VSL++LDLS + I+ LP+  + L  L+ L L+Y   + R+  K IS +  + +LR 
Sbjct:   583 ISKLVSLRYLDLSWTYIKRLPVGLQELKKLRYLRLDY---MKRL--KSISGISNISSLRK 637

Query:   116 YECAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPS 175
              +      + D  L  + +                I++ +    ++LL +  P+ V    
Sbjct:   638 LQLLQSKMSLDMSLVEELQLLEHLEV-------LNISIKSSLVVEKLLNA--PRLVKCLQ 688

Query:   176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGG---EVKRVLEISGFHSLK 232
             + +      +S GV +L  + +L  + +    + EIKI+         R  +    H+L 
Sbjct:   689 ILVLRGVQEESSGVLTLPDMDNLNKVIIRKCGMCEIKIERKTLSLSSNRSPKTQFLHNLS 748

Query:   233 NVYISRSK-FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLE 291
              V+IS     +  TWL  APNL  +E+ + + ++ II+ EK     A  M+ +IPF +LE
Sbjct:   749 TVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEK-----AMTMSGIIPFQKLE 803

Query:   292 RLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL-ERKIVIKGQRRWWN 350
              L L  L  L++++ + L FP LK + + +CP L+KLPLD    + + ++VIK Q   W 
Sbjct:   804 SLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIRDEELVIKYQEEEWL 863

Query:   351 E-LQWDDEATQNAFLPCFKPF 370
             E ++WD+EAT+  FLP FK F
Sbjct:   864 ERVEWDNEATRLRFLPFFKFF 884

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153474 AT5G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 6.5e-33, P = 6.5e-33
 Identities = 120/375 (32%), Positives = 181/375 (48%)

Query:     3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI---SKV 59
             N IE   ES  CP+L TL L  N   +++ +F   +  L VL  S  NP L E+   S +
Sbjct:   515 NQIEEACESLHCPKLETLLLRDNRLRKISREFLSHVPILMVLDLSL-NPNLIELPSFSPL 573

Query:    60 VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
              SL+ L+LS + I SLP     L NL  LNLE+TY + RI    I +L  LE L++Y  A
Sbjct:   574 YSLRFLNLSCTGITSLPDGLYALRNLLYLNLEHTYMLKRIYE--IHDLPNLEVLKLY--A 629

Query:   120 ALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVS-TPSLCL 178
             +     D ++                    TITL N    +  LG    ++ S T  L L
Sbjct:   630 SGIDITDKLV--------RQIQAMKHLYLLTITLRNSSGLEIFLGDT--RFSSYTEGLTL 679

Query:   179 SHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID----NGGEV--KRVLEISGFHSLK 232
                +  +SL V  LA++   + L++  + + +I+I+    N  E+   RV     F +L+
Sbjct:   680 DEQSYYQSLKV-PLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINLR 738

Query:   233 NVYISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEV-MANLIPFARL 290
              V +   +  +  TWL  AP+L  + +    D++ II   +   +     +A +IPF  L
Sbjct:   739 KVRLDNCTGLKDLTWLVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVIPFREL 798

Query:   291 ERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWN 350
             E L L  L  LK+++   L F  LKE+++  CP L KLPLD     ++ +VI  +  W  
Sbjct:   799 EFLTLRNLGQLKSIYRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQ 858

Query:   351 ELQWDDEATQNAFLP 365
              LQW+D AT+  F P
Sbjct:   859 GLQWEDVATKERFFP 873

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 120/374 (32%), Positives = 187/374 (50%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSNI-FHRVNSDFFQSMASLRVLKWSYSNPLLF---EI 56
             M N+ E ++ SP C  L TLFL +N     ++ +FF+ M SL VL  S ++ L     EI
Sbjct:   524 MNNNFEKILGSPECVELITLFLQNNYKLVDISMEFFRCMPSLAVLDLSENHSLSELPEEI 583

Query:    57 SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
             S++VSLQ+LDLS + IE LP     L  L  L LE T  +  I    IS L  L TLR+ 
Sbjct:   584 SELVSLQYLDLSGTYIERLPHGLHELRKLVHLKLERTRRLESISG--ISYLSSLRTLRLR 641

Query:   117 ECAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
             +        D+ L  + +                +       + R+ G C+ Q++     
Sbjct:   642 DSKT---TLDTGLMKELQLLEHLELITTDISSGLV--GELFCYPRV-GRCI-QHI----Y 690

Query:   177 CLSHFNN-SKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY 235
                H+    +S+GV  L ++ +L  + +    + EI I+     K+ L    F +L NV 
Sbjct:   691 IRDHWERPEESVGVLVLPAIHNLCYISIWNCWMWEIMIEKT-PWKKNLTNPNFSNLSNVR 749

Query:   236 ISRSK-FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLI 294
             I      +  TWL  APNL  + +  C+ +++II  EK   V   +   ++PF +LE L 
Sbjct:   750 IEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASV---LEKEILPFQKLECLN 806

Query:   295 LEELKNLKTVHSKALPFPHLKEMSV-DRCPLLKKLPLDCNRGLE-RKIVIK-GQRRWWNE 351
             L +L  LK+++  ALPF  L+ + + + CP L+KLPLD    ++  + VIK  +++W   
Sbjct:   807 LYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYKEKKWIER 866

Query:   352 LQWDDEATQNAFLP 365
             ++W+DEATQ  FLP
Sbjct:   867 VEWEDEATQYRFLP 880

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 123/379 (32%), Positives = 183/379 (48%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSNPL--LFE- 55
             M N IE +  SP CP L TLFL  N  + H ++ +FF+ M  L VL  S ++ L  L E 
Sbjct:   522 MNNGIEEISGSPECPELTTLFLQENKSLVH-ISGEFFRHMRKLVVLDLSENHQLDGLPEQ 580

Query:    56 ISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
             IS++V+L++LDLSH+ IE LP   + L  L  LNLE    +  I    IS L  L TL +
Sbjct:   581 ISELVALRYLDLSHTNIEGLPACLQDLKTLIHLNLECMRRLGSIAG--ISKLSSLRTLGL 638

Query:   116 YECAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPS 175
                  +    D +   +                 T+ L        L+ +CM Q VS   
Sbjct:   639 RNSNIM---LDVMSVKELHLLEHLEILTIDIVS-TMVLEQMIDAGTLM-NCM-QEVSIRC 692

Query:   176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY 235
             L      ++K      L ++  L++L +   ++ EI+I+             F +L  V 
Sbjct:   693 LIYDQEQDTK----LRLPTMDSLRSLTMWNCEISEIEIERLTWNTNPTSPC-FFNLSQVI 747

Query:   236 ISR-SKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL---IPFARLE 291
             I   S  +  TWL  APN+  + I+  + ++E+I   K   V  E    L   IPF +L+
Sbjct:   748 IHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHAKATGVTEEEQQQLHKIIPFQKLQ 807

Query:   292 RLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRG-LERKIVIKGQRRWWN 350
              L L  L  LK+++  +L FP L  + V+RCP L+KLPLD   G + +K V++ +   W 
Sbjct:   808 ILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKLPLDSKTGTVGKKFVLQYKETEWI 867

Query:   351 E-LQWDDEATQNAFLPCFK 368
             E ++W DEAT+  FLP  K
Sbjct:   868 ESVEWKDEATKLHFLPSTK 886

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
 Identities = 74/223 (33%), Positives = 125/223 (56%)

Query:   152 TLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVF--SLASL-RHLQTLQLTYNDL 208
             TL +       +     Q++S+  L LSH   S+ L ++  S++SL RHL++L ++ + L
Sbjct:   662 TLEHLEILTTTIDPRAKQFLSSHRL-LSH---SRLLEIYGSSVSSLNRHLESLSVSTDKL 717

Query:   209 DEIKIDNGG--EVKRVLEISGFHSLKNVYISRSK-FRHATWLFLAPNLKRVEIDNCQDMK 265
              E +I +    E+K +  I  F SL +V I   +  R  T+L  AP ++ + + + +D++
Sbjct:   718 REFQIKSCSISEIK-MGGICNFLSLVDVNIFNCEGLRELTFLIFAPKIRSLSVWHAKDLE 776

Query:   266 EIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLL 325
             +II+ EK  E   E  + ++PF  L  L L +L  LK ++ + LPF  L+E+++  CP L
Sbjct:   777 DIINEEKACE--GEE-SGILPFPELNFLTLHDLPKLKKIYWRPLPFLCLEEINIRECPNL 833

Query:   326 KKLPLDCNRGL--ERKIVIKGQ-RRWWNELQWDDEATQNAFLP 365
             +KLPLD   G   E   +I+ +  RW+  ++W DEAT+  FLP
Sbjct:   834 RKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRFLP 876

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2197739 AT1G61300 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
 Identities = 61/187 (32%), Positives = 98/187 (52%)

Query:   192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG----FHSLKNVYISRS-KFRHATW 246
             LAS+ +L +L +  +   EIK          L I+     F +L  + +S+    +  TW
Sbjct:   583 LASMENLSSLWVKNSYFSEIKCRESETASSYLRINPKIPCFTNLSRLGLSKCHSIKDLTW 642

Query:   247 LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS 306
             +  APNL  + I++ +++ EII+ EK     A  + ++ PF +LERLIL  L  L++++ 
Sbjct:   643 ILFAPNLVYLYIEDSREVGEIINKEK-----ATNLTSITPFLKLERLILYNLPKLESIYW 697

Query:   307 KALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWW-----NELQWDDEATQN 361
               L FP L  + V  CP L+KLPL+        +V + Q R +     NEL+W+DE T+N
Sbjct:   698 SPLHFPRLLIIHVLDCPKLRKLPLNAT---SVPLVEEFQIRMYPPGLGNELEWEDEDTKN 754

Query:   362 AFLPCFK 368
              F+   K
Sbjct:   755 RFVLSIK 761

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
 Identities = 63/187 (33%), Positives = 97/187 (51%)

Query:   192 LASLRHLQTLQLTYNDLDEIKID-NGGEVKR-VLEISG----FHSLKNVYISRS-KFRHA 244
             LAS+ +L  L +  +   EI I     E +   L I+     F +L  + I +    +  
Sbjct:   699 LASMENLYGLLVENSYFSEINIKCRESETESSYLHINPKIPCFTNLTGLIIMKCHSMKDL 758

Query:   245 TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV 304
             TW+  APNL  ++I + +++ EII+ EK       + + + PF +LERL L  L  L+++
Sbjct:   759 TWILFAPNLVNLDIRDSREVGEIINKEK----AINLTSIITPFQKLERLFLYGLPKLESI 814

Query:   305 HSKALPFPHLKEMSVDRCPLLKKLPLDCNR-GLERKIVIK-GQRRWWNELQWDDEATQNA 362
             +   LPFP L  + V  CP L+KLPL+     L  +  I+       NEL+W+DE T+N 
Sbjct:   815 YWSPLPFPLLSNIVVKYCPKLRKLPLNATSVPLVEEFEIRMDPPEQENELEWEDEDTKNR 874

Query:   363 FLPCFKP 369
             FLP  KP
Sbjct:   875 FLPSIKP 881

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2008440 AT1G61180 [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 3.1e-23, P = 3.1e-23
 Identities = 110/380 (28%), Positives = 172/380 (45%)

Query:     1 MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV 60
             M N IE +     C  L TLFL SN    +   F + M  L VL  SY+        ++ 
Sbjct:   519 MDNDIEEITCESKCSELTTLFLQSNKLKNLPGAFIRYMQKLVVLDLSYNRDFNKLPEQIS 578

Query:    61 SLQHLDLSHSRIESLPIEFKC--LVNLKCLN-LEYTYGISRIPPKVISNLKILETLRMYE 117
              L  + L    + +  IE     L  LK L  L+ TY   R+    IS +  L +LR+  
Sbjct:   579 GL--VSLQFLDLSNTSIEHMPIGLKELKKLTFLDLTY-TDRLCS--ISGISRLLSLRLLR 633

Query:   118 CAALPQARDSILFGDCRXXXXXXXXXXXXXXFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
                     D+ +  + +                I+L+     QRL      + +S  +LC
Sbjct:   634 LLGSKVHGDASVLKELQQLQNLQELAITVSAELISLD-----QRLA-----KLIS--NLC 681

Query:   178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG----FHSLKN 233
             +  F   K   +  LAS+ +L +L++  +   EIK          L I+     F +L  
Sbjct:   682 IEGFLQ-KPFDLSFLASMENLSSLRVENSYFSEIKCRESETESSYLRINPKIPCFTNLSR 740

Query:   234 VYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLER 292
             + I +    +  TW+  APNL  + I++ +++ EII+ EK     A  + ++ PF +LE 
Sbjct:   741 LEIMKCHSMKDLTWILFAPNLVVLLIEDSREVGEIINKEK-----ATNLTSITPFLKLEW 795

Query:   293 LILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC---NRGLERKIVIKGQRRWW 349
             LIL  L  L++++   LPFP L  M V  CP L+KLPL+    ++  E +I +       
Sbjct:   796 LILYNLPKLESIYWSPLPFPVLLTMDVSNCPKLRKLPLNATSVSKVEEFEIHMYPPPEQE 855

Query:   350 NELQWDDEATQNAFLPCFKP 369
             NEL+W+D+ T+N FLP  KP
Sbjct:   856 NELEWEDDDTKNRFLPSIKP 875

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034579001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (884 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           +L+ LDLS++R+  +P   FK L NLK L+L     ++ I P+  S L  L +L +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNN-LTSISPEAFSGLPSLRSLDL 55

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE---ISKVVSLQHLDLSHSRI 72
           L++L LS+N    +    F+ + +L+VL  S +N         S + SL+ LDLS + +
Sbjct: 1  NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.86
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.82
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.8
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.68
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.62
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.61
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.6
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.58
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.34
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.28
KOG4341	483	consensus F-box protein containing LRR [General fu	99.25
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
KOG4341	483	consensus F-box protein containing LRR [General fu	99.14
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.93
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.88
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.88
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.71
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.7
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.64
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.54
PLN03150	623	hypothetical protein; Provisional	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.52
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.28
PLN03150	623	hypothetical protein; Provisional	98.25
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.08
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.03
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.01
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.87
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.82
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.8
PRK15386	426	type III secretion protein GogB; Provisional	97.76
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.63
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.39
PRK15386	426	type III secretion protein GogB; Provisional	97.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.23
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.12
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.05
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.99
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.8
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.53
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.24
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.09
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.69
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.34
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.95
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.97
smart00370	26	LRR Leucine-rich repeats, outliers.	92.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.71
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.31
smart00370	26	LRR Leucine-rich repeats, outliers.	90.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.86
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.01
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.74
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.2

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.88  E-value=2.9e-22  Score=207.12  Aligned_cols=301  Identities=19%  Similarity=0.182  Sum_probs=135.8

Q ss_pred             cccc-cccCC--CCCCCCCEEecCCCcCCC-CChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-c
Q 017525            3 NHIE-NLVES--PVCPRLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-S   74 (370)
Q Consensus         3 n~l~-~l~~~--~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~   74 (370)
                      |.+. .+|..  ..+++|++|++++|.+.. +|.   ..+++|++|++++|.   .+|..++++++|++|++++|.+. .
T Consensus       103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            3443 44443  256666666666665542 222   345555555555554   34555555555555555555543 4


Q ss_pred             cCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc------------cCCcchhhhhcc
Q 017525           75 LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL------------FGDCRVLVEELL  141 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~------------~~~~~~~~~~l~  141 (370)
                      +|..++++++|++|++++|...+.+|.. ++++++|++|++++| .+. .+|..+.            .......+..+.
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYN-NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCC-ccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            4445555555555555555433444443 555555555555555 332 1110000            000001223344


Q ss_pred             cCCCccEEEEEecchhh-hH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCc
Q 017525          142 GLEHLSVFTITLNNFHA-FQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEV  219 (370)
Q Consensus       142 ~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  219 (370)
                      .+++|+.|++..+.... .+ .+....     +|+.+++.++.-.... ...+..+++|+.|++++|.+.......+   
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~---  328 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQ-----KLISLDLSDNSLSGEI-PELVIQLQNLEILHLFSNNFTGKIPVAL---  328 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhcc-----CcCEEECcCCeeccCC-ChhHcCCCCCcEEECCCCccCCcCChhH---
Confidence            44555555554443321 11 111111     2444444433211111 1133445555666655555443222111   


Q ss_pred             cccccccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhcc-cc----------CCCcccccCCccc
Q 017525          220 KRVLEISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSE-KF----------GEVPAEVMANLIP  286 (370)
Q Consensus       220 ~~~~~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~  286 (370)
                            ..+++|+.|++++|++++ + ..++.+++|+.|++++|.....+...- ..          .......+..+..
T Consensus       329 ------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~  402 (968)
T PLN00113        329 ------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA  402 (968)
T ss_pred             ------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence                  345666666666665543 2 235556666666666665332211100 00          0000012234455


Q ss_pred             cccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525          287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       287 ~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      +++|+.|++++|.--..++.....++.|+.|+++++.
T Consensus       403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence            6666666666664323333334456677777776653

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=7.2e-24  Score=192.20  Aligned_cols=318  Identities=18%  Similarity=0.253  Sum_probs=184.6

Q ss_pred             CcccccccCCCC-CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESPV-CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      +|+++.+|..+. ..+|+.|+|.+|.|+.+....++.++.|+.||||.|.  ++|. .+..-.++++|+|++|.|+.+..
T Consensus       111 ~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~  190 (873)
T KOG4194|consen  111 KNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLET  190 (873)
T ss_pred             cchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccccc
Confidence            477888888744 4558888888888888877768888888888888887  4442 34444678888888888887655


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       .+..+.+|..|.+++| .++.+|..+|.++++|+.|++..| .+..+.           ...+..+.+|+.+.+..|++
T Consensus       191 ~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN-~irive-----------~ltFqgL~Sl~nlklqrN~I  257 (873)
T KOG4194|consen  191 GHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRN-RIRIVE-----------GLTFQGLPSLQNLKLQRNDI  257 (873)
T ss_pred             ccccccchheeeecccC-cccccCHHHhhhcchhhhhhcccc-ceeeeh-----------hhhhcCchhhhhhhhhhcCc
Confidence             4667778888888888 677788777888888888888888 665332           12233444444444444443


Q ss_pred             hhhHh--hhcCCCCCccc-------------------cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceecc
Q 017525          157 HAFQR--LLGSCMPQYVS-------------------TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDN  215 (370)
Q Consensus       157 ~~~~~--~~~~~~~~~l~-------------------L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~  215 (370)
                      ..+.+  +..+.++..++                   |+.|+++.. .+.......++-++.|+.|+|+.|.++.++...
T Consensus       258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~s  336 (873)
T KOG4194|consen  258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGS  336 (873)
T ss_pred             ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhH
Confidence            33221  11111111111                   222222111 111111123344445555555555555544333


Q ss_pred             CCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccc
Q 017525          216 GGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL  293 (370)
Q Consensus       216 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L  293 (370)
                      +         ..+..|++|+|++|+++.+.  .+..+.+|++|+|++|.. ...+++         ....+.++|+|+.|
T Consensus       337 f---------~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~l-s~~IED---------aa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  337 F---------RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNEL-SWCIED---------AAVAFNGLPSLRKL  397 (873)
T ss_pred             H---------HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeE-EEEEec---------chhhhccchhhhhe
Confidence            2         34555555555555554442  344566666666666542 222111         12356678899999


Q ss_pred             ccccccccccccCCC-ccCCCcceEeecCCCCCCCCCCCCCCCC-------ccee-EEechHhhhhhcccCc
Q 017525          294 ILEELKNLKTVHSKA-LPFPHLKEMSVDRCPLLKKLPLDCNRGL-------ERKI-VIKGQRRWWNELQWDD  356 (370)
Q Consensus       294 ~l~~~~~l~~i~~~~-~~~~~L~~L~l~~c~~L~~l~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~  356 (370)
                      .+.++ +++.|+-.+ .+++.||.|++.+.+ +.++..+.....       .+.+ +=+|+..|+  .+|-.
T Consensus       398 ~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nSssflCDCql~Wl--~qWl~  465 (873)
T KOG4194|consen  398 RLTGN-QLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAFEPMELKELVMNSSSFLCDCQLKWL--AQWLY  465 (873)
T ss_pred             eecCc-eeeecchhhhccCcccceecCCCCc-ceeecccccccchhhhhhhcccceEEeccHHHH--HHHHH
Confidence            98887 677776543 358888888887764 444444433322       1111 123677777  55543

>PLN03210 Resistant to P

Probab=99.87  E-value=2e-21  Score=201.88  Aligned_cols=296  Identities=19%  Similarity=0.219  Sum_probs=188.3

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCC-cccccCcc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHS-RIESLPIE   78 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~-~l~~lp~~   78 (370)
                      +.++.+|....+.+|+.|++.++.+..++.. +..+++|++|+++++.   .+| .++.+++|++|++++| .+..+|..
T Consensus       599 ~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        599 YPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh
Confidence            4456667666678888888888888777766 5778888888888776   455 4777888888888887 45678888


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      ++.+++|+.|++++|..+..+|.. + ++++|+.|++++|..+..+|               ....+|+.|++..+.+..
T Consensus       677 i~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p---------------~~~~nL~~L~L~~n~i~~  739 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFP---------------DISTNISWLDLDETAIEE  739 (1153)
T ss_pred             hhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccc---------------cccCCcCeeecCCCcccc
Confidence            888888888888888777778775 3 78888888888874333222               113567777777776655


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCc------cccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccC
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKS------LGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSL  231 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L  231 (370)
                      ++......+     |..|.+..+.....      ........+++|+.|++++|. +..++..+          ..+++|
T Consensus       740 lP~~~~l~~-----L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si----------~~L~~L  804 (1153)
T PLN03210        740 FPSNLRLEN-----LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI----------QNLHKL  804 (1153)
T ss_pred             ccccccccc-----cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhh----------hCCCCC
Confidence            543322222     33333333211000      000011123466666666642 33343322          456666


Q ss_pred             cEEEEecc-cccccCcccCCCCccEEeeccCcchHHhhhcc-cc-----C-CCcccccCCcccccccccccccccccccc
Q 017525          232 KNVYISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSE-KF-----G-EVPAEVMANLIPFARLERLILEELKNLKT  303 (370)
Q Consensus       232 ~~L~l~~~-~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~~~~p~L~~L~l~~~~~l~~  303 (370)
                      +.|++++| .++.++....+++|+.|++++|..+...+... +.     . ..-..+|..+..+++|+.|++++|.+++.
T Consensus       805 ~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        805 EHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             CEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence            66666666 55555544456666666666665544322100 00     0 00001344677899999999999999999


Q ss_pred             ccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          304 VHSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       304 i~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      ++.....+++|+.+++.+|++|+.+++..
T Consensus       885 l~~~~~~L~~L~~L~l~~C~~L~~~~l~~  913 (1153)
T PLN03210        885 VSLNISKLKHLETVDFSDCGALTEASWNG  913 (1153)
T ss_pred             cCcccccccCCCeeecCCCcccccccCCC
Confidence            98877789999999999999998877643

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1e-21  Score=203.02  Aligned_cols=290  Identities=22%  Similarity=0.245  Sum_probs=165.5

Q ss_pred             CCCCCCCEEecCCCcCCC-CChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCccc
Q 017525           12 PVCPRLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLK   86 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~   86 (370)
                      ..+++|++|++++|.+.. +|.. ++++++|++|++++|.   .+|..++++++|++|++++|.+. .+|..++.+++|+
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             cccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            456677777777776653 3433 6667777777777665   55666666777777777766654 4555666666666


Q ss_pred             EEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc------------cCCcchhhhhcccCCCccEEEEEe
Q 017525           87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL------------FGDCRVLVEELLGLEHLSVFTITL  153 (370)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~------------~~~~~~~~~~l~~l~~L~~l~l~~  153 (370)
                      +|++++|...+.+|.. ++++++|++|++.+| .+. .+|..+.            .......+..+..+++|+.|+++.
T Consensus       216 ~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  293 (968)
T PLN00113        216 WIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD  293 (968)
T ss_pred             EEECcCCccCCcCChh-HhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcC
Confidence            6666666444455544 566666666666665 332 2221100            001112344566677888888887


Q ss_pred             cchhh-hHhh-hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525          154 NNFHA-FQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL  231 (370)
Q Consensus       154 ~~~~~-~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L  231 (370)
                      |.... ++.. ....     +|+.+.+.++.-.... ...+..+++|+.|++++|.+.......+         ..+++|
T Consensus       294 n~l~~~~p~~~~~l~-----~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l---------~~~~~L  358 (968)
T PLN00113        294 NSLSGEIPELVIQLQ-----NLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNL---------GKHNNL  358 (968)
T ss_pred             CeeccCCChhHcCCC-----CCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHH---------hCCCCC
Confidence            76542 2221 2222     3555665544322111 1245566777777777766653221111         234445


Q ss_pred             cEEEEeccc------------------------cccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcc
Q 017525          232 KNVYISRSK------------------------FRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLI  285 (370)
Q Consensus       232 ~~L~l~~~~------------------------l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (370)
                      +.|++++|+                        +++.  ..++.+++|+.|++++|.....             .+..+.
T Consensus       359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~-------------~p~~~~  425 (968)
T PLN00113        359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGE-------------LPSEFT  425 (968)
T ss_pred             cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeE-------------CChhHh
Confidence            555554443                        3321  2344556666666666653222             234677


Q ss_pred             ccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          286 PFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       286 ~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      .+++|+.|+++++.-...++.....+++|+.|++.+|.-...+|...
T Consensus       426 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~  472 (968)
T PLN00113        426 KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF  472 (968)
T ss_pred             cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence            89999999999985333444444568999999999997666666543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.86  E-value=1e-23  Score=191.24  Aligned_cols=264  Identities=24%  Similarity=0.312  Sum_probs=172.6

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCccccc-CcccccCCcccEEec
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNL   90 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l   90 (370)
                      .+++.|+|++|.|+.+....|.++.+|-+|.|+.|.  .+| ..|.++++|+.|+|..|.|..+ ...+..+++|+.|.+
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence            445555555555555544445555555555555555  333 2334456666666666555433 124555666666666


Q ss_pred             cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhcCCCC
Q 017525           91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLGSCMP  168 (370)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~  168 (370)
                      ..| .+..+..++|.+|.++++|++..| .+..+           .-+.+.+++.|+.|+++.|.+..+.  .+....  
T Consensus       253 qrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~v-----------n~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq--  317 (873)
T KOG4194|consen  253 QRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAV-----------NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ--  317 (873)
T ss_pred             hhc-CcccccCcceeeecccceeecccc-hhhhh-----------hcccccccchhhhhccchhhhheeecchhhhcc--
Confidence            665 455566666777777777777777 55532           2345667888999999998876543  233333  


Q ss_pred             CccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc----c
Q 017525          169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH----A  244 (370)
Q Consensus       169 ~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~  244 (370)
                         .|..|+++. +.++..+..++..++.|+.|+|++|.++.+....+         ..+++|++|+|++|.++.    .
T Consensus       318 ---kL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af---------~~lssL~~LdLr~N~ls~~IEDa  384 (873)
T KOG4194|consen  318 ---KLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF---------VGLSSLHKLDLRSNELSWCIEDA  384 (873)
T ss_pred             ---cceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHH---------HHhhhhhhhcCcCCeEEEEEecc
Confidence               366666654 33344434577788999999999999999876544         678999999999995432    1


Q ss_pred             -CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525          245 -TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD  320 (370)
Q Consensus       245 -~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~  320 (370)
                       ..+.+++.|+.|.+.+|+ ++.+..            ..+.+++.|++|++.++ -+..|.+.++.--.|++|.+.
T Consensus       385 a~~f~gl~~LrkL~l~gNq-lk~I~k------------rAfsgl~~LE~LdL~~N-aiaSIq~nAFe~m~Lk~Lv~n  447 (873)
T KOG4194|consen  385 AVAFNGLPSLRKLRLTGNQ-LKSIPK------------RAFSGLEALEHLDLGDN-AIASIQPNAFEPMELKELVMN  447 (873)
T ss_pred             hhhhccchhhhheeecCce-eeecch------------hhhccCcccceecCCCC-cceeecccccccchhhhhhhc
Confidence             246679999999999987 555543            47789999999999887 466776655433367777663

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.83  E-value=4e-21  Score=190.78  Aligned_cols=342  Identities=32%  Similarity=0.474  Sum_probs=254.5

Q ss_pred             CCcccccccCCCCCCCCCEEecCCCc--CCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc
Q 017525            1 MTNHIENLVESPVCPRLRTLFLSSNI--FHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         1 ~~n~l~~l~~~~~l~~L~~L~l~~~~--i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      |+|.+..++....++.|++|-+.+|.  +..++..+|..++.|++||+++|.   .+|..++.+.+||||+++++.+..+
T Consensus       531 ~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~L  610 (889)
T KOG4658|consen  531 MNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHL  610 (889)
T ss_pred             eccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcccc
Confidence            56778888888888899999999995  788888889999999999999987   8999999999999999999999999


Q ss_pred             CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      |..++++.+|.+|++..+......+ ++...|.+|++|.+... ...         .+.....++..+++|+.+.+....
T Consensus       611 P~~l~~Lk~L~~Lnl~~~~~l~~~~-~i~~~L~~Lr~L~l~~s-~~~---------~~~~~l~el~~Le~L~~ls~~~~s  679 (889)
T KOG4658|consen  611 PSGLGNLKKLIYLNLEVTGRLESIP-GILLELQSLRVLRLPRS-ALS---------NDKLLLKELENLEHLENLSITISS  679 (889)
T ss_pred             chHHHHHHhhheecccccccccccc-chhhhcccccEEEeecc-ccc---------cchhhHHhhhcccchhhheeecch
Confidence            9999999999999999986655554 44777999999999766 322         123567778888888888887666


Q ss_pred             hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccccccc-ccccCcEE
Q 017525          156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEIS-GFHSLKNV  234 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~~~L~~L  234 (370)
                      ......+..+..+.. ....+.+..+...+.  ...+..+++|+.|.+.++...+....+......    . .|+++..+
T Consensus       680 ~~~~e~l~~~~~L~~-~~~~l~~~~~~~~~~--~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~----~~~f~~l~~~  752 (889)
T KOG4658|consen  680 VLLLEDLLGMTRLRS-LLQSLSIEGCSKRTL--ISSLGSLGNLEELSILDCGISEIVIEWEESLIV----LLCFPNLSKV  752 (889)
T ss_pred             hHhHhhhhhhHHHHH-HhHhhhhccccccee--ecccccccCcceEEEEcCCCchhhcccccccch----hhhHHHHHHH
Confidence            533444433333322 222333322222222  346778899999999997776554433222111    2 26788888


Q ss_pred             EEecc-cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccc-ccccccccccccCCCccCC
Q 017525          235 YISRS-KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERL-ILEELKNLKTVHSKALPFP  312 (370)
Q Consensus       235 ~l~~~-~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L-~l~~~~~l~~i~~~~~~~~  312 (370)
                      .+.+| ...++.|....|+|+.|.+.+|..++++++........   ......|+++..+ .+.+.+.++.+......++
T Consensus       753 ~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l---~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~  829 (889)
T KOG4658|consen  753 SILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLEL---KELILPFNKLEGLRMLCSLGGLPQLYWLPLSFL  829 (889)
T ss_pred             HhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhc---ccEEecccccccceeeecCCCCceeEecccCcc
Confidence            88888 77888888889999999999999999887643332211   1124456666677 4666677777766666788


Q ss_pred             CcceEeecCCCCCCCCCCCCCCCC-c--ceeEEechHhhhhhcccCchhhhhhh
Q 017525          313 HLKEMSVDRCPLLKKLPLDCNRGL-E--RKIVIKGQRRWWNELQWDDEATQNAF  363 (370)
Q Consensus       313 ~L~~L~l~~c~~L~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (370)
                      .|+.+.+..||++..+|....... .  .......+.+|.+...|.++..+..|
T Consensus       830 ~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  883 (889)
T KOG4658|consen  830 KLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEGVYWEDELTKLRF  883 (889)
T ss_pred             chhheehhcCcccccCccccccceeccccceeecCCccceeeEEehhhhhhhhc
Confidence            899999999999999999864444 2  34445568889999999999988776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=9.2e-23  Score=186.62  Aligned_cols=292  Identities=23%  Similarity=0.291  Sum_probs=169.4

Q ss_pred             cccccccCC-CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc
Q 017525            3 NHIENLVES-PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         3 n~l~~l~~~-~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      |+++.+... +++|.||.+.+.+|+++  .+|.+ +-.+..|.+|+||.|+  +.|..+.+.+++-+|++++|+|.++|.
T Consensus        65 N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn  143 (1255)
T KOG0444|consen   65 NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPN  143 (1255)
T ss_pred             hhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCc
Confidence            344444443 56666666666666554  56666 5566666666666666  666666666666666666666666665


Q ss_pred             c-cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           78 E-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        78 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                      . +.+++.|-.||+++| .+..+|.. +..+..|+.|++++| .+..           .....+..++.|++|.+++...
T Consensus       144 ~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~N-PL~h-----------fQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  144 SLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNN-PLNH-----------FQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             hHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCC-hhhH-----------HHHhcCccchhhhhhhcccccc
Confidence            3 346666666666666 55666665 666666666666666 3321           2344455555555555554321


Q ss_pred             hh--hH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcE
Q 017525          157 HA--FQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN  233 (370)
Q Consensus       157 ~~--~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  233 (370)
                      .-  ++ ++..+.     +|..++++..+--..  ...+.++++|+.|++|+|.++.+....          ..+.+|++
T Consensus       210 Tl~N~Ptsld~l~-----NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N~iteL~~~~----------~~W~~lEt  272 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLH-----NLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGNKITELNMTE----------GEWENLET  272 (1255)
T ss_pred             hhhcCCCchhhhh-----hhhhccccccCCCcc--hHHHhhhhhhheeccCcCceeeeeccH----------HHHhhhhh
Confidence            11  11 111111     233334332221111  124556677778888877777664322          45677777


Q ss_pred             EEEecccccccC-cccCCCCccEEeeccCcchHHhhhc--cccCC---------CcccccCCcccccccccccccccccc
Q 017525          234 VYISRSKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDS--EKFGE---------VPAEVMANLIPFARLERLILEELKNL  301 (370)
Q Consensus       234 L~l~~~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~--~~~~~---------~~~~~~~~~~~~p~L~~L~l~~~~~l  301 (370)
                      |++++|+++.+| ++.++++|+.|.+.+|+..=+-+++  .+.+.         ...-+|..++.|++|+.|.++.+ .+
T Consensus       273 LNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N-rL  351 (1255)
T KOG0444|consen  273 LNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN-RL  351 (1255)
T ss_pred             hccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc-ce
Confidence            777777777765 4666777777777666532111110  00000         00114567788889999988765 45


Q ss_pred             ccccCCCccCCCcceEeecCCCCCCC
Q 017525          302 KTVHSKALPFPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       302 ~~i~~~~~~~~~L~~L~l~~c~~L~~  327 (370)
                      -.++....-++.|+.|++...|+|.-
T Consensus       352 iTLPeaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  352 ITLPEAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             eechhhhhhcCCcceeeccCCcCccC
Confidence            55555555688999999999998874

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.82  E-value=7.7e-23  Score=187.11  Aligned_cols=285  Identities=22%  Similarity=0.250  Sum_probs=169.2

Q ss_pred             ccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            6 ENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         6 ~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      +++|.. +.+.+|+.|.+.+|++..+-.. +..++.||.+++..|+    .+|..+..+..|..|++++|.++++|..+.
T Consensus        45 ~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE  123 (1255)
T KOG0444|consen   45 EQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLE  123 (1255)
T ss_pred             hhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhh
Confidence            344443 4444555555555544433333 3445555555555554    455555555555556666665555555555


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      ..+++..|++++| .+..+|...+.+++.|-.||+++| .+.            ..+..+..+.+|++|.+++|....++
T Consensus       124 ~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe------------~LPPQ~RRL~~LqtL~Ls~NPL~hfQ  189 (1255)
T KOG0444|consen  124 YAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLE------------MLPPQIRRLSMLQTLKLSNNPLNHFQ  189 (1255)
T ss_pred             hhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhh------------hcCHHHHHHhhhhhhhcCCChhhHHH
Confidence            5555556666555 455555554555555556666655 444            34455667788889999998876654


Q ss_pred             --hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525          161 --RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       161 --~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (370)
                        .+..+..     |..|.+++-......-..++..+.+|+.+++|.|.+..++...          -.+++|+.|+|++
T Consensus       190 LrQLPsmts-----L~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl----------y~l~~LrrLNLS~  254 (1255)
T KOG0444|consen  190 LRQLPSMTS-----LSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL----------YKLRNLRRLNLSG  254 (1255)
T ss_pred             HhcCccchh-----hhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH----------hhhhhhheeccCc
Confidence              2333332     3333333322222222236677889999999999999988766          3589999999999


Q ss_pred             ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc------------------
Q 017525          239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK------------------  299 (370)
Q Consensus       239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~------------------  299 (370)
                      |+++.+. ..+...+|++|+++.|+...              +|..+..+++|+.|.+.++.                  
T Consensus       255 N~iteL~~~~~~W~~lEtLNlSrNQLt~--------------LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  255 NKITELNMTEGEWENLETLNLSRNQLTV--------------LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             CceeeeeccHHHHhhhhhhccccchhcc--------------chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence            9999875 35567799999999987533              33456666666666655432                  


Q ss_pred             ------ccccccCCCccCCCcceEeecCCCCCCCCCCCCCCC
Q 017525          300 ------NLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRG  335 (370)
Q Consensus       300 ------~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~  335 (370)
                            .++-++.+...++.|+.|.++ |..|-.+|.....+
T Consensus       321 f~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL  361 (1255)
T KOG0444|consen  321 FHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLL  361 (1255)
T ss_pred             HHhhccccccCchhhhhhHHHHHhccc-ccceeechhhhhhc
Confidence                  223333334456666666664 34455566554444

>PLN03210 Resistant to P

Probab=99.80  E-value=1e-18  Score=181.75  Aligned_cols=286  Identities=20%  Similarity=0.256  Sum_probs=167.9

Q ss_pred             CCCCCCCEEecCCCcCC-------CCChHHHhcC-CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccccc
Q 017525           12 PVCPRLRTLFLSSNIFH-------RVNSDFFQSM-ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKC   81 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~-------~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~   81 (370)
                      ..+++|+.|.+..+.+.       .+|.. +..+ .+|+.|.+.+++  .+|..+ ...+|++|+++++.+..+|..+..
T Consensus       555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~  632 (1153)
T PLN03210        555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHS  632 (1153)
T ss_pred             hcCccccEEEEecccccccccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccccc
Confidence            45677777766544211       23444 3333 347777776666  556555 456677777777766666666666


Q ss_pred             CCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc-hhhhH
Q 017525           82 LVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN-FHAFQ  160 (370)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~  160 (370)
                      +++|+.|+++++..+..+|.  ++.+++|+.|++.+|..+.            ..+..+..+++|+.|++..+. ...++
T Consensus       633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~------------~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLV------------ELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcc------------ccchhhhccCCCCEEeCCCCCCcCccC
Confidence            77777777766655555554  5666677777776664443            233345556666666666542 22222


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcc-----------------cc-
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVK-----------------RV-  222 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~-----------------~~-  222 (370)
                      ...   ++.  +|+.|.+.+|..+....  .  ..++|+.|++++|.++.++....-+..                 .. 
T Consensus       699 ~~i---~l~--sL~~L~Lsgc~~L~~~p--~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l  769 (1153)
T PLN03210        699 TGI---NLK--SLYRLNLSGCSRLKSFP--D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL  769 (1153)
T ss_pred             CcC---CCC--CCCEEeCCCCCCccccc--c--ccCCcCeeecCCCccccccccccccccccccccccchhhcccccccc
Confidence            211   111  25556666554432221  1  123556666666555444321100000                 00 


Q ss_pred             --ccccccccCcEEEEecc-cccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          223 --LEISGFHSLKNVYISRS-KFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       223 --~~~~~~~~L~~L~l~~~-~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                        .....+++|+.|++++| .+..+| .++.+++|+.|+|++|..++.++.             . ..+++|+.|++++|
T Consensus       770 ~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~-------------~-~~L~sL~~L~Ls~c  835 (1153)
T PLN03210        770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT-------------G-INLESLESLDLSGC  835 (1153)
T ss_pred             chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC-------------C-CCccccCEEECCCC
Confidence              00133578999999999 666654 578899999999999987775532             1 14556666666665


Q ss_pred             cccc--------------------cccCCCccCCCcceEeecCCCCCCCCCCCCCCCC
Q 017525          299 KNLK--------------------TVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL  336 (370)
Q Consensus       299 ~~l~--------------------~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~  336 (370)
                      ..++                    .++.....+++|+.|++.+|++++.+|.....+.
T Consensus       836 ~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~  893 (1153)
T PLN03210        836 SRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLK  893 (1153)
T ss_pred             CccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccccc
Confidence            4443                    3444445688999999999999999998766553

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.77  E-value=4.2e-21  Score=167.21  Aligned_cols=291  Identities=21%  Similarity=0.251  Sum_probs=181.5

Q ss_pred             CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhh-ccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEIS-KVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~-~l~~L~~L~l~~~~l~~lp~   77 (370)
                      .|-++.+|.. +.+.+|..|++.+|.+..+|+  |.+|..|.++.+..|.  .+|+..+ ++.++.+||++.|+++++|.
T Consensus       192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd  269 (565)
T KOG0472|consen  192 SNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD  269 (565)
T ss_pred             hhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch
Confidence            4556677776 777777777777777777774  6777777777777777  6666665 67788888888888888888


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccc------------------------cC--
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL------------------------FG--  131 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~------------------------~~--  131 (370)
                      .+..+.+|+.||+++| .++.+|.. ++++ .|+.|-+.|| .+..+..++.                        ++  
T Consensus       270 e~clLrsL~rLDlSNN-~is~Lp~s-Lgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e  345 (565)
T KOG0472|consen  270 EICLLRSLERLDLSNN-DISSLPYS-LGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE  345 (565)
T ss_pred             HHHHhhhhhhhcccCC-ccccCCcc-cccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence            8778888888888887 66777776 7777 6777777777 4433222100                        00  


Q ss_pred             ----CcchhhhhcccCCCccEEEEEecchhhhHh-hhcCCC---CCccc-------------------cCcEEecCcCCC
Q 017525          132 ----DCRVLVEELLGLEHLSVFTITLNNFHAFQR-LLGSCM---PQYVS-------------------TPSLCLSHFNNS  184 (370)
Q Consensus       132 ----~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~---~~~l~-------------------L~~l~l~~~~~~  184 (370)
                          ............-+.++|+++....+.++. .+...+   +...+                   +..+.++  .+.
T Consensus       346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls--nn~  423 (565)
T KOG0472|consen  346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS--NNK  423 (565)
T ss_pred             ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh--cCc
Confidence                000001111112233344443332222211 000000   00000                   0111111  111


Q ss_pred             CccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcch
Q 017525          185 KSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       185 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~  264 (370)
                      .......++.+++|..|++++|.+.++|.++          ..+-.|+.|++++|++..+|.....+...++.+..+..+
T Consensus       424 isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~----------~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  424 ISFVPLELSQLQKLTFLDLSNNLLNDLPEEM----------GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             cccchHHHHhhhcceeeecccchhhhcchhh----------hhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence            1111235667888999999999999888777          456779999999998888776555444333344444445


Q ss_pred             HHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525          265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      ..+.            +.-+.++.+|.+|++.++ .+..++...+.+.+|++|+++|.|
T Consensus       494 ~~vd------------~~~l~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  494 GSVD------------PSGLKNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             cccC------------hHHhhhhhhcceeccCCC-chhhCChhhccccceeEEEecCCc
Confidence            5543            234778999999999887 688999999999999999999886

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.68  E-value=1.9e-19  Score=156.97  Aligned_cols=249  Identities=21%  Similarity=0.240  Sum_probs=125.1

Q ss_pred             cccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            3 NHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         3 n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      |.++.+... .++..+++|++++|++..+|+. ++.+..+..++++.++  ++|..++.+.+|+.++.+++.+.++|..+
T Consensus        55 N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i  133 (565)
T KOG0472|consen   55 NDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSI  133 (565)
T ss_pred             CchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchH
Confidence            334444333 4555555566655555555555 4555555555555555  55555555555555555555555555555


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      +.+..|+.++..+| .+..+|.+ +.++.+|..+++.+| .+..            .+...-.++.|+.++...|..+.+
T Consensus       134 ~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n-~l~~------------l~~~~i~m~~L~~ld~~~N~L~tl  198 (565)
T KOG0472|consen  134 GRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGN-KLKA------------LPENHIAMKRLKHLDCNSNLLETL  198 (565)
T ss_pred             HHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhcccc-chhh------------CCHHHHHHHHHHhcccchhhhhcC
Confidence            55555555555555 44445554 555555555555555 4432            122222245555555555444443


Q ss_pred             Hh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525          160 QR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       160 ~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (370)
                      +. ++.+..     +..+.+...+-   ..++.|..+..|+.|.++.|.++.++.+..         ..++++..|++..
T Consensus       199 P~~lg~l~~-----L~~LyL~~Nki---~~lPef~gcs~L~Elh~g~N~i~~lpae~~---------~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  199 PPELGGLES-----LELLYLRRNKI---RFLPEFPGCSLLKELHVGENQIEMLPAEHL---------KHLNSLLVLDLRD  261 (565)
T ss_pred             Chhhcchhh-----hHHHHhhhccc---ccCCCCCccHHHHHHHhcccHHHhhHHHHh---------cccccceeeeccc
Confidence            32 111111     11111111111   112245555555555555555555543332         3456666666666


Q ss_pred             ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      |+++..| .+..+.+|+.||+++|....              ++..++++ .|+.|.+.+++
T Consensus       262 Nklke~Pde~clLrsL~rLDlSNN~is~--------------Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  262 NKLKEVPDEICLLRSLERLDLSNNDISS--------------LPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccccCchHHHHhhhhhhhcccCCcccc--------------CCcccccc-eeeehhhcCCc
Confidence            6666554 34445566666666654322              33455666 66666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.65  E-value=1.7e-15  Score=148.12  Aligned_cols=244  Identities=17%  Similarity=0.143  Sum_probs=143.4

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      +.++.+|... .++|+.|++.+|.++.+|.    ..++|++|++++|.  .+|..   .++|+.|++++|.++.+|..  
T Consensus       211 ~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l--  280 (788)
T PRK15387        211 SGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL--  280 (788)
T ss_pred             CCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc--
Confidence            4556666541 2467777777777776664    24677777777776  44432   35677777777776666542  


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                       ..+|+.|++++| .+..+|..    .++|+.|++++| .+..+|         ..      ..+|+.|.+..|.+..++
T Consensus       281 -p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N-~L~~Lp---------~l------p~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        281 -PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDN-QLASLP---------AL------PSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             -hhhcCEEECcCC-cccccccc----ccccceeECCCC-ccccCC---------CC------cccccccccccCcccccc
Confidence             245667777776 45555542    356777777777 555333         11      123455555665554443


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK  240 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (370)
                      .+.      . .|+.|++++..-. ..  +.+  .++|+.|++++|.+..++             ....+|+.|++++|+
T Consensus       339 ~lp------~-~Lq~LdLS~N~Ls-~L--P~l--p~~L~~L~Ls~N~L~~LP-------------~l~~~L~~LdLs~N~  393 (788)
T PRK15387        339 TLP------S-GLQELSVSDNQLA-SL--PTL--PSELYKLWAYNNRLTSLP-------------ALPSGLKELIVSGNR  393 (788)
T ss_pred             ccc------c-ccceEecCCCccC-CC--CCC--CcccceehhhccccccCc-------------ccccccceEEecCCc
Confidence            211      1 3555555543221 11  111  235666666666666543             223567888888887


Q ss_pred             ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525          241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD  320 (370)
Q Consensus       241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~  320 (370)
                      ++.++..  .++|+.|++++|.. ..++             .   ...+|+.|+++++ .++.++.....++.|+.|+++
T Consensus       394 Lt~LP~l--~s~L~~LdLS~N~L-ssIP-------------~---l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        394 LTSLPVL--PSELKELMVSGNRL-TSLP-------------M---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccCCCCc--ccCCCEEEccCCcC-CCCC-------------c---chhhhhhhhhccC-cccccChHHhhccCCCeEECC
Confidence            7766543  35788888888763 2221             1   1346777888776 577777666677888888887


Q ss_pred             CCC
Q 017525          321 RCP  323 (370)
Q Consensus       321 ~c~  323 (370)
                      +++
T Consensus       454 ~N~  456 (788)
T PRK15387        454 GNP  456 (788)
T ss_pred             CCC
Confidence            764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.62  E-value=1.1e-17  Score=159.62  Aligned_cols=106  Identities=27%  Similarity=0.417  Sum_probs=82.9

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~   92 (370)
                      ++++.|...+|.+..+...  ..-.+|++++++.+.  .+|.+++.+.+|+.+++.+|+++.+|..+...++|+.|.+.+
T Consensus       219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~  296 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAY  296 (1081)
T ss_pred             cchheeeeccCcceeeccc--cccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhh
Confidence            4445555555544432221  233578999999998  888889999999999999999999999888999999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQAR  125 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  125 (370)
                      | .+..+|.. ..++++|++|++..| .+...|
T Consensus       297 n-el~yip~~-le~~~sL~tLdL~~N-~L~~lp  326 (1081)
T KOG0618|consen  297 N-ELEYIPPF-LEGLKSLRTLDLQSN-NLPSLP  326 (1081)
T ss_pred             h-hhhhCCCc-ccccceeeeeeehhc-cccccc
Confidence            8 77888875 778999999999999 776554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.61  E-value=7.3e-17  Score=154.21  Aligned_cols=271  Identities=21%  Similarity=0.222  Sum_probs=184.6

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      |.++.+...+...+|+.++++++.+..+| +++..|.+|+.+....|.  .+|..+....+|++|.+..|.++.+|....
T Consensus       229 n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le  307 (1081)
T KOG0618|consen  229 NPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLE  307 (1081)
T ss_pred             Ccceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCccc
Confidence            44554444466788999999999999999 558999999999999999  889999999999999999999999998888


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCC-CcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh--
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKI-LETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH--  157 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~--  157 (370)
                      .+..|++|++..| .+..+|...+..+.. |+.|+.+.+ .+...+.           ..-..++.|+.|.+..|...  
T Consensus       308 ~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~-----------~~e~~~~~Lq~LylanN~Ltd~  374 (1081)
T KOG0618|consen  308 GLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPS-----------YEENNHAALQELYLANNHLTDS  374 (1081)
T ss_pred             ccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhc-ccccccc-----------ccchhhHHHHHHHHhcCccccc
Confidence            8999999999988 677777654544443 666666655 4443220           00111233334444444321  


Q ss_pred             hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525          158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS  237 (370)
Q Consensus       158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (370)
                      .++.+.....     |+.|+++.. .+.....+.+.+++.|+.|++|+|.++.++...          ..++.|++|...
T Consensus       375 c~p~l~~~~h-----LKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tv----------a~~~~L~tL~ah  438 (1081)
T KOG0618|consen  375 CFPVLVNFKH-----LKVLHLSYN-RLNSFPASKLRKLEELEELNLSGNKLTTLPDTV----------ANLGRLHTLRAH  438 (1081)
T ss_pred             chhhhccccc-----eeeeeeccc-ccccCCHHHHhchHHhHHHhcccchhhhhhHHH----------HhhhhhHHHhhc
Confidence            2222222222     222222221 111122235677889999999999999998665          678999999999


Q ss_pred             cccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceE
Q 017525          238 RSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEM  317 (370)
Q Consensus       238 ~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L  317 (370)
                      +|.+..+|.+..++.|+.+|++.|.......            +..+.. |+|++|+++++..   ..++...++.++.+
T Consensus       439 sN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l------------~~~~p~-p~LkyLdlSGN~~---l~~d~~~l~~l~~l  502 (1081)
T KOG0618|consen  439 SNQLLSFPELAQLPQLKVLDLSCNNLSEVTL------------PEALPS-PNLKYLDLSGNTR---LVFDHKTLKVLKSL  502 (1081)
T ss_pred             CCceeechhhhhcCcceEEecccchhhhhhh------------hhhCCC-cccceeeccCCcc---cccchhhhHHhhhh
Confidence            9988888889999999999999876433332            222322 8999999999865   22233334444444


Q ss_pred             ee
Q 017525          318 SV  319 (370)
Q Consensus       318 ~l  319 (370)
                      ..
T Consensus       503 ~~  504 (1081)
T KOG0618|consen  503 SQ  504 (1081)
T ss_pred             hh
Confidence            33

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-17  Score=145.26  Aligned_cols=258  Identities=21%  Similarity=0.226  Sum_probs=166.5

Q ss_pred             ccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccC-CcccccCc-c
Q 017525            4 HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSH-SRIESLPI-E   78 (370)
Q Consensus         4 ~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~   78 (370)
                      .++++|+. -.+.-+.++|..|+|+.+|+..|+.+++||+|+|+.|.   ..|++|.++..|..|.+.+ |+|+.+|+ .
T Consensus        57 GL~eVP~~-LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~  135 (498)
T KOG4237|consen   57 GLTEVPAN-LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA  135 (498)
T ss_pred             CcccCccc-CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence            45666663 23556778999999999999999999999999999998   7788999999988887766 78998988 4


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      ++.+..|+.|.+.-| .+..+...++..+++|..|.+.+| .+..+.           -..+..+..++.+.+..+.+..
T Consensus       136 F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn-~~q~i~-----------~~tf~~l~~i~tlhlA~np~ic  202 (498)
T KOG4237|consen  136 FGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDN-KIQSIC-----------KGTFQGLAAIKTLHLAQNPFIC  202 (498)
T ss_pred             hhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccch-hhhhhc-----------cccccchhccchHhhhcCcccc
Confidence            778888888888777 555566666888888888888877 544222           1123334444444443333110


Q ss_pred             hHh----------------hhcCCCCCcc---------------c---cCcEEecCcCCCCccccccccccCCCcEEEEe
Q 017525          159 FQR----------------LLGSCMPQYV---------------S---TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLT  204 (370)
Q Consensus       159 ~~~----------------~~~~~~~~~l---------------~---L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~  204 (370)
                      .-.                .+....-..+               .   +..--...|..........|.++++|++|+++
T Consensus       203 dCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnls  282 (498)
T KOG4237|consen  203 DCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLS  282 (498)
T ss_pred             ccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccC
Confidence            000                0000000000               0   00000111111111112357889999999999


Q ss_pred             cCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525          205 YNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA  282 (370)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  282 (370)
                      +|.++.+...++         .....++.|.|..|++..+.  .+..+..|+.|+|.+|+... +.            +.
T Consensus       283 nN~i~~i~~~aF---------e~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~-~~------------~~  340 (498)
T KOG4237|consen  283 NNKITRIEDGAF---------EGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITT-VA------------PG  340 (498)
T ss_pred             CCccchhhhhhh---------cchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEE-Ee------------cc
Confidence            999999877665         56788888888888777653  46778888889988877433 32            13


Q ss_pred             Ccccccccccccccc
Q 017525          283 NLIPFARLERLILEE  297 (370)
Q Consensus       283 ~~~~~p~L~~L~l~~  297 (370)
                      .+.....|.+|.+-.
T Consensus       341 aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLS  355 (498)
T ss_pred             cccccceeeeeehcc
Confidence            555666666666653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=2.6e-17  Score=127.83  Aligned_cols=164  Identities=22%  Similarity=0.325  Sum_probs=125.7

Q ss_pred             cccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccC
Q 017525            5 IENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCL   82 (370)
Q Consensus         5 l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l   82 (370)
                      +++++...++++++.|.+++|.++.+|+. ++.+++|++|++.++.  ++|..++.+++|+.|+++-|++..+|..++.+
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~  101 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF  101 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence            34566667888899999999999999888 7899999999999988  88999999999999999999888889999999


Q ss_pred             CcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh
Q 017525           83 VNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR  161 (370)
Q Consensus        83 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~  161 (370)
                      |.|+.||+.+|.... .+|.. |..|..|+-|.+++| .++            ..+.+++++++|+.+.+..+....++.
T Consensus       102 p~levldltynnl~e~~lpgn-ff~m~tlralyl~dn-dfe------------~lp~dvg~lt~lqil~lrdndll~lpk  167 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDN-DFE------------ILPPDVGKLTNLQILSLRDNDLLSLPK  167 (264)
T ss_pred             chhhhhhccccccccccCCcc-hhHHHHHHHHHhcCC-Ccc------------cCChhhhhhcceeEEeeccCchhhCcH
Confidence            999999998884443 45555 777888888888888 665            455667777777777666554332211


Q ss_pred             hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccce
Q 017525          162 LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIK  212 (370)
Q Consensus       162 ~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~  212 (370)
                                                   .++.+..|+.|.+.+|.++.++
T Consensus       168 -----------------------------eig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  168 -----------------------------EIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             -----------------------------HHHHHHHHHHHhcccceeeecC
Confidence                                         3455666777777777777554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.58  E-value=4.7e-17  Score=141.85  Aligned_cols=264  Identities=16%  Similarity=0.173  Sum_probs=162.3

Q ss_pred             ecCCCcCCCCChHHHhcCC-CCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccC-cccccCCcccEEeccCccc
Q 017525           21 FLSSNIFHRVNSDFFQSMA-SLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLEYTYG   95 (370)
Q Consensus        21 ~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~   95 (370)
                      +.++-.++.+|.+    +| .-..|.|..|.  .+ +..|+.+++||.|+|++|.|+.|. ..+..+.+|-.|-+.++..
T Consensus        52 dCr~~GL~eVP~~----LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk  127 (498)
T KOG4237|consen   52 DCRGKGLTEVPAN----LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK  127 (498)
T ss_pred             EccCCCcccCccc----CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence            3344456667653    33 45567888888  44 467889999999999999998774 4788899998888887559


Q ss_pred             ccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCcccc
Q 017525           96 ISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVST  173 (370)
Q Consensus        96 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L  173 (370)
                      ++++|.++|+++.+|+.|.+.-| ++..           .....+..++++..|.+..+.+..+..  +.....     +
T Consensus       128 I~~l~k~~F~gL~slqrLllNan-~i~C-----------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~-----i  190 (498)
T KOG4237|consen  128 ITDLPKGAFGGLSSLQRLLLNAN-HINC-----------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA-----I  190 (498)
T ss_pred             hhhhhhhHhhhHHHHHHHhcChh-hhcc-----------hhHHHHHHhhhcchhcccchhhhhhccccccchhc-----c
Confidence            99999999999999999998877 5553           235567777888777777766544332  111111     2


Q ss_pred             CcEEecCcCCCCccc-----------cccccccCCCcEEEEecCCcccceeccCCCcccc--------------cc---c
Q 017525          174 PSLCLSHFNNSKSLG-----------VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV--------------LE---I  225 (370)
Q Consensus       174 ~~l~l~~~~~~~~~~-----------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~--------------~~---~  225 (370)
                      +.+.+.......+-.           ...++..+...-..+++..+..+...-+.+....              -|   .
T Consensus       191 ~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf  270 (498)
T KOG4237|consen  191 KTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCF  270 (498)
T ss_pred             chHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHH
Confidence            222222111100000           0122222222222222211111111000000000              01   1


Q ss_pred             cccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccc
Q 017525          226 SGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKT  303 (370)
Q Consensus       226 ~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~  303 (370)
                      ..+++|++|++++|+++.+  .++.+...+++|.|..|+ ++.+-.            ..+.++..|+.|++.++ .++.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~------------~~f~~ls~L~tL~L~~N-~it~  336 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSS------------GMFQGLSGLKTLSLYDN-QITT  336 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHH------------HhhhccccceeeeecCC-eeEE
Confidence            5688999999999999887  478889999999999887 444422            37788889999999887 6776


Q ss_pred             ccCCCc-cCCCcceEee
Q 017525          304 VHSKAL-PFPHLKEMSV  319 (370)
Q Consensus       304 i~~~~~-~~~~L~~L~l  319 (370)
                      +.+..+ ....|.+|.+
T Consensus       337 ~~~~aF~~~~~l~~l~l  353 (498)
T KOG4237|consen  337 VAPGAFQTLFSLSTLNL  353 (498)
T ss_pred             Eecccccccceeeeeeh
Confidence            654432 2334555555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.58  E-value=9e-15  Score=143.06  Aligned_cols=224  Identities=20%  Similarity=0.162  Sum_probs=161.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +|.++.+|..  +++|+.|++++|.++.+|..    .++|+.|++++|.  .+|..   ..+|+.|++++|+++.+|.  
T Consensus       231 ~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~--  299 (788)
T PRK15387        231 DNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPV--  299 (788)
T ss_pred             CCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCCchhhhhhc---hhhcCEEECcCCccccccc--
Confidence            5788888864  68999999999999988753    4789999999998  55543   2578899999999998886  


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                       ..++|+.|++++| .+..+|..    ..+|+.|++.+| .++.+|         ..      ..+|+.|++++|.+..+
T Consensus       300 -~p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N-~L~~LP---------~l------p~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        300 -LPPGLQELSVSDN-QLASLPAL----PSELCKLWAYNN-QLTSLP---------TL------PSGLQELSVSDNQLASL  357 (788)
T ss_pred             -cccccceeECCCC-ccccCCCC----cccccccccccC-cccccc---------cc------ccccceEecCCCccCCC
Confidence             3578999999998 56666642    235778888888 776443         11      15788999999887766


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +...  .     ++..|.+.+.. +...  +.  ..++|+.|++++|.++.++             ...++|+.|++++|
T Consensus       358 P~lp--~-----~L~~L~Ls~N~-L~~L--P~--l~~~L~~LdLs~N~Lt~LP-------------~l~s~L~~LdLS~N  412 (788)
T PRK15387        358 PTLP--S-----ELYKLWAYNNR-LTSL--PA--LPSGLKELIVSGNRLTSLP-------------VLPSELKELMVSGN  412 (788)
T ss_pred             CCCC--c-----ccceehhhccc-cccC--cc--cccccceEEecCCcccCCC-------------CcccCCCEEEccCC
Confidence            5432  1     34455444322 1111  11  1257999999999988764             23468999999999


Q ss_pred             cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      +++.++..  ..+|+.|++++|.. +.+             |..+..+++|+.|++++++
T Consensus       413 ~LssIP~l--~~~L~~L~Ls~NqL-t~L-------------P~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        413 RLTSLPML--PSGLLSLSVYRNQL-TRL-------------PESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             cCCCCCcc--hhhhhhhhhccCcc-ccc-------------ChHHhhccCCCeEECCCCC
Confidence            88887643  45788899998874 333             3467788999999999874

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.55  E-value=1.6e-14  Score=141.97  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=28.8

Q ss_pred             CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525          196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~  262 (370)
                      ++|+.|++++|.++.++.            ..+++|+.|++++|+++.++. .-.++|+.|+|++|.
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~------------~l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs~N~  378 (754)
T PRK15370        325 PGLKTLEAGENALTSLPA------------SLPPELQVLDVSKNQITVLPE-TLPPTITTLDVSRNA  378 (754)
T ss_pred             ccceeccccCCccccCCh------------hhcCcccEEECCCCCCCcCCh-hhcCCcCEEECCCCc
Confidence            456666666666555432            123466666666665554432 113456666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=8.8e-14  Score=136.81  Aligned_cols=237  Identities=16%  Similarity=0.197  Sum_probs=158.4

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      +.++.+|.. -.+.|+.|++++|.++.+|...+   ++|++|++++|.  .+|..+.  .+|+.|++++|.++.+|..+.
T Consensus       188 ~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~  261 (754)
T PRK15370        188 LGLTTIPAC-IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP  261 (754)
T ss_pred             CCcCcCCcc-cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh
Confidence            456667764 23679999999999999988633   589999999998  6776553  479999999999999987654


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                        .+|+.|++++| .+..+|.. +.  ++|+.|++++| .+..+|            ..+  .++|+.|++..|....++
T Consensus       262 --s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N-~Lt~LP------------~~l--p~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        262 --SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDN-SIRTLP------------AHL--PSGITHLNVQSNSLTALP  320 (754)
T ss_pred             --CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCC-ccccCc------------ccc--hhhHHHHHhcCCccccCC
Confidence              58999999988 66677765 33  58999999999 776444            111  135667777777665543


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK  240 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (370)
                      ...     .. +|+.|.+.++.-....  ..+  .++|+.|++++|.++.++.            ...++|++|++++|+
T Consensus       321 ~~l-----~~-sL~~L~Ls~N~Lt~LP--~~l--~~sL~~L~Ls~N~L~~LP~------------~lp~~L~~LdLs~N~  378 (754)
T PRK15370        321 ETL-----PP-GLKTLEAGENALTSLP--ASL--PPELQVLDVSKNQITVLPE------------TLPPTITTLDVSRNA  378 (754)
T ss_pred             ccc-----cc-cceeccccCCccccCC--hhh--cCcccEEECCCCCCCcCCh------------hhcCCcCEEECCCCc
Confidence            211     11 4666666655422211  112  2588999999888876643            224688889998888


Q ss_pred             ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      ++.++.- -...|+.|++++|... .+..         .++.....+|.+..|.+.+++
T Consensus       379 Lt~LP~~-l~~sL~~LdLs~N~L~-~LP~---------sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        379 LTNLPEN-LPAALQIMQASRNNLV-RLPE---------SLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             CCCCCHh-HHHHHHHHhhccCCcc-cCch---------hHHHHhhcCCCccEEEeeCCC
Confidence            7776531 1236888888887642 2211         011233345777777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.47  E-value=1e-15  Score=119.10  Aligned_cols=142  Identities=24%  Similarity=0.334  Sum_probs=125.3

Q ss_pred             CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCccc--ccC
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIE--SLP   76 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~--~lp   76 (370)
                      .|.++.+|+. .++.+|++|++++|+|+.+|.. ++.+++|+.|++..+.  .+|.+|+.++-|++||+.+|++.  .+|
T Consensus        42 HNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lp  120 (264)
T KOG0617|consen   42 HNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLP  120 (264)
T ss_pred             cCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCC
Confidence            3667778877 8999999999999999999998 8999999999999998  89999999999999999999885  789


Q ss_pred             cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           77 IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                      ..+..++.|+.|++++| ....+|.. ++++++||+|.+..| .+-            ..+.+++.++.|+.+.+.++..
T Consensus       121 gnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdn-dll------------~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  121 GNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDN-DLL------------SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             cchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccC-chh------------hCcHHHHHHHHHHHHhccccee
Confidence            88889999999999998 66778887 999999999999999 544            5677888889999999988876


Q ss_pred             hhh
Q 017525          157 HAF  159 (370)
Q Consensus       157 ~~~  159 (370)
                      ..+
T Consensus       186 ~vl  188 (264)
T KOG0617|consen  186 TVL  188 (264)
T ss_pred             eec
Confidence            544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.40  E-value=5.4e-14  Score=127.36  Aligned_cols=253  Identities=18%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             EecCCCcCC-CCChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcccc-------cCcccccCCc
Q 017525           20 LFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIES-------LPIEFKCLVN   84 (370)
Q Consensus        20 L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~~~~l~~   84 (370)
                      |+|..+.++ .-....+..+.+|++|+++++.       .++..+...+++++++++++.+..       ++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            445555444 2222335556666666666665       133334445556666666654432       1223445666


Q ss_pred             ccEEeccCcccccccCcccccCCC---CCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEecchhh--
Q 017525           85 LKCLNLEYTYGISRIPPKVISNLK---ILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLNNFHA--  158 (370)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~~~~l~---~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~--  158 (370)
                      |+.|++++|......+.. +..+.   +|++|++++| .+....       .......+..+ ++|+.++++.+.+..  
T Consensus        83 L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~-~~~~~~-------~~~l~~~l~~~~~~L~~L~L~~n~l~~~~  153 (319)
T cd00116          83 LQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNN-GLGDRG-------LRLLAKGLKDLPPALEKLVLGRNRLEGAS  153 (319)
T ss_pred             eeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCC-ccchHH-------HHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence            666666665333222221 33333   3666666666 443100       00122233444 566666666655431  


Q ss_pred             hHhhhc-CCCCCccccCcEEecCcCCCCcccc----ccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcE
Q 017525          159 FQRLLG-SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN  233 (370)
Q Consensus       159 ~~~~~~-~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~  233 (370)
                      ...+.. .....  .++.+.+.++.- .....    ..+..+++|+.|++++|.+++.....++.     ....+++|++
T Consensus       154 ~~~~~~~~~~~~--~L~~L~l~~n~l-~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~-----~~~~~~~L~~  225 (319)
T cd00116         154 CEALAKALRANR--DLKELNLANNGI-GDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE-----TLASLKSLEV  225 (319)
T ss_pred             HHHHHHHHHhCC--CcCEEECcCCCC-chHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH-----HhcccCCCCE
Confidence            111110 00001  244444444321 11111    12334467777777777665443221110     0034677788


Q ss_pred             EEEeccccccc--Cccc-----CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          234 VYISRSKFRHA--TWLF-----LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       234 L~l~~~~l~~~--~~l~-----~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                      |++++|.+++.  ..+.     ..+.|++|++++|........         .+...+..+++|+.++++++
T Consensus       226 L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         226 LNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK---------DLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             EecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH---------HHHHHHhcCCCccEEECCCC
Confidence            88877766542  1111     236778888877764311110         01123445577777777776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.34  E-value=7.4e-13  Score=119.91  Aligned_cols=261  Identities=23%  Similarity=0.188  Sum_probs=165.8

Q ss_pred             CCCCCCCEEecCCCcCCC-----CChHHHhcCCCCcEEEccCCC-c--------chhhhhccccCCEEeccCCccc-ccC
Q 017525           12 PVCPRLRTLFLSSNIFHR-----VNSDFFQSMASLRVLKWSYSN-P--------LLFEISKVVSLQHLDLSHSRIE-SLP   76 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~-----~~~~~~~~l~~L~~L~l~~~~-~--------~~~~~~~l~~L~~L~l~~~~l~-~lp   76 (370)
                      ..++.|++|+++++.++.     ++.. +...+.+++++++++. .        ++..+..+++|++|++++|.+. ..+
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            345669999999998752     3333 5677889999998876 2        3455677889999999999875 333


Q ss_pred             cccccC---CcccEEeccCccccc----ccCcccccCC-CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccE
Q 017525           77 IEFKCL---VNLKCLNLEYTYGIS----RIPPKVISNL-KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSV  148 (370)
Q Consensus        77 ~~~~~l---~~L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  148 (370)
                      ..+..+   ++|++|++++|+...    .+.. .+..+ ++|+.|++.+| .+..-.       .......+..+++|+.
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n-~l~~~~-------~~~~~~~~~~~~~L~~  169 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRN-RLEGAS-------CEALAKALRANRDLKE  169 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCC-cCCchH-------HHHHHHHHHhCCCcCE
Confidence            334344   459999999985432    1112 25566 89999999999 655100       1123445666788999


Q ss_pred             EEEEecchhh--hHhhhc-CCCCCccccCcEEecCcCCCCcccc----ccccccCCCcEEEEecCCcccceeccCCCccc
Q 017525          149 FTITLNNFHA--FQRLLG-SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQTLQLTYNDLDEIKIDNGGEVKR  221 (370)
Q Consensus       149 l~l~~~~~~~--~~~~~~-~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  221 (370)
                      ++++.+....  .+.+.. .....  +|+.+++.++.- ...+.    ..+..+++|++|++++|.+++.....+...  
T Consensus       170 L~l~~n~l~~~~~~~l~~~l~~~~--~L~~L~L~~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~--  244 (319)
T cd00116         170 LNLANNGIGDAGIRALAEGLKANC--NLEVLDLNNNGL-TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA--  244 (319)
T ss_pred             EECcCCCCchHHHHHHHHHHHhCC--CCCEEeccCCcc-ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHH--
Confidence            9999887652  222211 11111  478888887643 22211    245577899999999998876433222110  


Q ss_pred             cccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccc-ccccccc
Q 017525          222 VLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPF-ARLERLI  294 (370)
Q Consensus       222 ~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~L~~L~  294 (370)
                       ++ ...+.|++|++++|.+++.      ..+..+++|+.+++++|....+-...         ....+..+ +.|+.++
T Consensus       245 -~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~---------~~~~~~~~~~~~~~~~  313 (319)
T cd00116         245 -LL-SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL---------LAESLLEPGNELESLW  313 (319)
T ss_pred             -Hh-ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH---------HHHHHhhcCCchhhcc
Confidence             00 1247999999999987632      23456789999999999865442100         11233444 6777777


Q ss_pred             cccc
Q 017525          295 LEEL  298 (370)
Q Consensus       295 l~~~  298 (370)
                      +.+.
T Consensus       314 ~~~~  317 (319)
T cd00116         314 VKDD  317 (319)
T ss_pred             cCCC
Confidence            6553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.28  E-value=3.6e-12  Score=127.49  Aligned_cols=256  Identities=22%  Similarity=0.276  Sum_probs=158.4

Q ss_pred             cccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchh-hhhccccCCEEeccCC-cccccCcccc
Q 017525            7 NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLF-EISKVVSLQHLDLSHS-RIESLPIEFK   80 (370)
Q Consensus         7 ~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~-~~~~l~~L~~L~l~~~-~l~~lp~~~~   80 (370)
                      +.|...+....|...+.++.+..++..  ..++.|++|-+..+.    .++. .|..++.|++||+++| .+..+|..++
T Consensus       515 ~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~  592 (889)
T KOG4658|consen  515 EIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIG  592 (889)
T ss_pred             ccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHh
Confidence            345556778889999999988777664  567789999999884    3333 3677999999999988 6789999999


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh-hh
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH-AF  159 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~-~~  159 (370)
                      .+-+|++|+++++ .+..+|.+ ++++++|.+|++..+....            ...+....+++|+.|.+...... +.
T Consensus       593 ~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~------------~~~~i~~~L~~Lr~L~l~~s~~~~~~  658 (889)
T KOG4658|consen  593 ELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTGRLE------------SIPGILLELQSLRVLRLPRSALSNDK  658 (889)
T ss_pred             hhhhhhcccccCC-CccccchH-HHHHHhhheeccccccccc------------cccchhhhcccccEEEeeccccccch
Confidence            9999999999998 78899998 9999999999999874333            33445556889999888766511 11


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc----EEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ----TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY  235 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (370)
                      -.+.....+..  |..+.......   .....+..++.|+    .+.+.++.......          +...+.+|+.|.
T Consensus       659 ~~l~el~~Le~--L~~ls~~~~s~---~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~----------~~~~l~~L~~L~  723 (889)
T KOG4658|consen  659 LLLKELENLEH--LENLSITISSV---LLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS----------SLGSLGNLEELS  723 (889)
T ss_pred             hhHHhhhcccc--hhhheeecchh---HhHhhhhhhHHHHHHhHhhhhcccccceeec----------ccccccCcceEE
Confidence            11111222211  33333322211   0001111122222    11111111111111          115567777777


Q ss_pred             Eeccccccc--Ccc-----cC-CCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC
Q 017525          236 ISRSKFRHA--TWL-----FL-APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK  307 (370)
Q Consensus       236 l~~~~l~~~--~~l-----~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~  307 (370)
                      +.+|.+.++  .+.     .. ++++..+.+.+|...++.              ......|+|+.|.+..|..++++.+.
T Consensus       724 i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l--------------~~~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  724 ILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL--------------TWLLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             EEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc--------------chhhccCcccEEEEecccccccCCCH
Confidence            777755432  111     11 445555556666554433              24456688888888888777766443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.25  E-value=1.4e-13  Score=121.32  Aligned_cols=263  Identities=20%  Similarity=0.241  Sum_probs=140.5

Q ss_pred             CCcEEEccCCC-----cchhhhhccccCCEEeccCC-ccc--ccCcccccCCcccEEeccCcccccccCcc-cccCCCCC
Q 017525           40 SLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHS-RIE--SLPIEFKCLVNLKCLNLEYTYGISRIPPK-VISNLKIL  110 (370)
Q Consensus        40 ~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L  110 (370)
                      -|+.|.+.+|.     .+-....+++++++|.+.+| +++  .+-..-..+++|+++++..|..+...... ...++++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            35555555554     12222345556666655555 232  11112234556666666555333332211 23355666


Q ss_pred             cEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccc
Q 017525          111 ETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVF  190 (370)
Q Consensus       111 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~  190 (370)
                      .+++++-|..+..          .....-....+.++.+...++.....+.+........ .+..+++.+|..+++.++-
T Consensus       219 ~~lNlSwc~qi~~----------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~-~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  219 KYLNLSWCPQISG----------NGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCL-EILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             HHhhhccCchhhc----------CcchHHhccchhhhhhhhcccccccHHHHHHHhccCh-HhhccchhhhccccchHHH
Confidence            6666655533321          0111122233334444333443333333332222111 3555566677666666432


Q ss_pred             ccc-ccCCCcEEEEec-CCcccceeccCCCccccccccccccCcEEEEecc-cccccC--cc-cCCCCccEEeeccCcch
Q 017525          191 SLA-SLRHLQTLQLTY-NDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WL-FLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       191 ~l~-~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l-~~l~~L~~L~L~~~~~~  264 (370)
                      .+. .+..|+.|..++ +.+++...+..+        ...++|+.|.+++| ++++..  .+ ...+.|+.+++..|-.+
T Consensus       288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg--------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~  359 (483)
T KOG4341|consen  288 LIACGCHALQVLCYSSCTDITDEVLWALG--------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI  359 (483)
T ss_pred             HHhhhhhHhhhhcccCCCCCchHHHHHHh--------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee
Confidence            222 456777887777 456665555444        56688888888888 777653  23 35778888888887766


Q ss_pred             HHhhhccccCCCcccccCCccccccccccccccccccccc-----cCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV-----HSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i-----~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      .+..           +.....++|.|+.|.+++|+.+++.     .....+...|+.+++++||.+++--+.-
T Consensus       360 ~d~t-----------L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~  421 (483)
T KOG4341|consen  360 TDGT-----------LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH  421 (483)
T ss_pred             hhhh-----------HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH
Confidence            6552           2235567888888888888766654     2223356678888888888777644433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=2.8e-11  Score=97.87  Aligned_cols=138  Identities=26%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHh-cCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCccc-
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEF-   79 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-   79 (370)
                      +.|++.+...+...++.|+|.+|.|+.+..  ++ .+.+|+.|++++|. .-...+..+++|+.|++++|.++.+...+ 
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~   84 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLD   84 (175)
T ss_dssp             -----------------------------S----TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHH
T ss_pred             cccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchH
Confidence            346666666778889999999999987754  44 57899999999999 44446788999999999999999886555 


Q ss_pred             ccCCcccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525           80 KCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT  152 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  152 (370)
                      ..+++|++|++++| .+..+. ...++.+++|++|++.+| .++..+        .--...+..+++|+.||-.
T Consensus        85 ~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~--------~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   85 KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGN-PVCEKK--------NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT--GGGGST--------THHHHHHHH-TT-SEETTE
T ss_pred             HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCC-cccchh--------hHHHHHHHHcChhheeCCE
Confidence            46899999999998 444433 233778999999999999 555221        1223445666777777543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=4.2e-12  Score=109.68  Aligned_cols=241  Identities=19%  Similarity=0.150  Sum_probs=164.3

Q ss_pred             CCCCCCCEEecCCCcCCC----CChHHHhcCCCCcEEEccCCC------cchhh-------hhccccCCEEeccCCccc-
Q 017525           12 PVCPRLRTLFLSSNIFHR----VNSDFFQSMASLRVLKWSYSN------PLLFE-------ISKVVSLQHLDLSHSRIE-   73 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~~~------~~~~~-------~~~l~~L~~L~l~~~~l~-   73 (370)
                      -.+..++.+++++|.|..    .....+.+.++|+..++++--      ++|..       +-.+++|++++||.|-+. 
T Consensus        27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~  106 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP  106 (382)
T ss_pred             cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence            467889999999998862    333447888999999999864      44433       445689999999999764 


Q ss_pred             -c---cCcccccCCcccEEeccCcccccccCccc-------------ccCCCCCcEEEccccCCCcccccccccCCcchh
Q 017525           74 -S---LPIEFKCLVNLKCLNLEYTYGISRIPPKV-------------ISNLKILETLRMYECAALPQARDSILFGDCRVL  136 (370)
Q Consensus        74 -~---lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  136 (370)
                       .   +..-++++..|++|++.+| .++......             ++.-++|+++....| ++.+-+       ....
T Consensus       107 ~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~g-------a~~~  177 (382)
T KOG1909|consen  107 KGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGG-------ATAL  177 (382)
T ss_pred             cchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-cccccc-------HHHH
Confidence             2   2335778999999999998 555333221             344577899988888 776422       2234


Q ss_pred             hhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccC
Q 017525          137 VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNG  216 (370)
Q Consensus       137 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  216 (370)
                      ...++.++.|+.+.+..|.+..-.                       . ..-...+..+++|++||+..|.++.-+....
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG-----------------------~-~al~eal~~~~~LevLdl~DNtft~egs~~L  233 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEG-----------------------V-TALAEALEHCPHLEVLDLRDNTFTLEGSVAL  233 (382)
T ss_pred             HHHHHhccccceEEEecccccCch-----------------------h-HHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence            455667778888877776542111                       0 0111357788999999999998876543222


Q ss_pred             CCccccccccccccCcEEEEecccccccC------cc-cCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccc
Q 017525          217 GEVKRVLEISGFHSLKNVYISRSKFRHAT------WL-FLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFAR  289 (370)
Q Consensus       217 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~------~l-~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  289 (370)
                      +.     +...+++|+.|++..|.+++-.      .+ ...|+|+.|.+.+|....+-...         +.......|.
T Consensus       234 ak-----aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~---------la~~~~ek~d  299 (382)
T KOG1909|consen  234 AK-----ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA---------LAACMAEKPD  299 (382)
T ss_pred             HH-----HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH---------HHHHHhcchh
Confidence            21     1156889999999999665532      12 35899999999999866554210         1124455899


Q ss_pred             cccccccccc
Q 017525          290 LERLILEELK  299 (370)
Q Consensus       290 L~~L~l~~~~  299 (370)
                      |+.|.|++|.
T Consensus       300 L~kLnLngN~  309 (382)
T KOG1909|consen  300 LEKLNLNGNR  309 (382)
T ss_pred             hHHhcCCccc
Confidence            9999999984

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.14  E-value=1.7e-12  Score=114.48  Aligned_cols=291  Identities=17%  Similarity=0.157  Sum_probs=190.6

Q ss_pred             CCCCEEecCCC-cCCCCC-hHHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCC-ccc--ccCcccccCCc
Q 017525           15 PRLRTLFLSSN-IFHRVN-SDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHS-RIE--SLPIEFKCLVN   84 (370)
Q Consensus        15 ~~L~~L~l~~~-~i~~~~-~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~   84 (370)
                      -.|+.|.++++ .+..-+ ..+..+|++++.|.+.+|.     .....-..+++|+++++..| .++  .+......+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            46788999998 444222 2346789999999999998     12222256899999999997 555  33334557999


Q ss_pred             ccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhh
Q 017525           85 LKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLL  163 (370)
Q Consensus        85 L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~  163 (370)
                      |+++++++|..++.-. .....+++.++.+...+|...+.          +.....-.....+..+++..+...+...+.
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l----------e~l~~~~~~~~~i~~lnl~~c~~lTD~~~~  287 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL----------EALLKAAAYCLEILKLNLQHCNQLTDEDLW  287 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH----------HHHHHHhccChHhhccchhhhccccchHHH
Confidence            9999999997665421 12256788888887777733321          111111122233334444344332222222


Q ss_pred             cCCCCCccccCcEEecCcCCCCcccccccc-ccCCCcEEEEecC-CcccceeccCCCccccccccccccCcEEEEecc-c
Q 017525          164 GSCMPQYVSTPSLCLSHFNNSKSLGVFSLA-SLRHLQTLQLTYN-DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-K  240 (370)
Q Consensus       164 ~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~-~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~  240 (370)
                      ....... .+..++...+....+..+.+++ +.++|+.|-++.+ .+++.....++        .+++.|+.+++..| .
T Consensus       288 ~i~~~c~-~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~--------rn~~~Le~l~~e~~~~  358 (483)
T KOG4341|consen  288 LIACGCH-ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG--------RNCPHLERLDLEECGL  358 (483)
T ss_pred             HHhhhhh-HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhh--------cCChhhhhhcccccce
Confidence            2222222 4778888888887777655554 5689999999984 46766655555        67899999999999 4


Q ss_pred             cccc---CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC-CccCCCcce
Q 017525          241 FRHA---TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK-ALPFPHLKE  316 (370)
Q Consensus       241 l~~~---~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~-~~~~~~L~~  316 (370)
                      +++-   ..-..++.|+.|.+++|..+++... ..       ..........|..+.+.+|+.+++-... ...++.||.
T Consensus       359 ~~d~tL~sls~~C~~lr~lslshce~itD~gi-~~-------l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  359 ITDGTLASLSRNCPRLRVLSLSHCELITDEGI-RH-------LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             ehhhhHhhhccCCchhccCChhhhhhhhhhhh-hh-------hhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            4443   2234689999999999998887621 00       1124567788999999999887765443 235889999


Q ss_pred             EeecCCCCCCCCCCCC
Q 017525          317 MSVDRCPLLKKLPLDC  332 (370)
Q Consensus       317 L~l~~c~~L~~l~~~~  332 (370)
                      +++.+|..+++-+...
T Consensus       431 i~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  431 IELIDCQDVTKEAISR  446 (483)
T ss_pred             eeeechhhhhhhhhHH
Confidence            9999998888765543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=1e-11  Score=113.74  Aligned_cols=200  Identities=20%  Similarity=0.223  Sum_probs=149.8

Q ss_pred             cccccCC---CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            5 IENLVES---PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         5 l~~l~~~---~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      ++++|..   ..+..-...+++.|.+..+|.. +..|..|+.+.+..|.  .+|..++++..|.+++++.|.+..+|..+
T Consensus        62 lk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l  140 (722)
T KOG0532|consen   62 LKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL  140 (722)
T ss_pred             hhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence            4555654   3455566788999999999888 7888889998888877  88989999999999999999999999988


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      ..|+ |+.|-+++| .++.+|.. ++.++.|..||++.| .+.            ..+..+..+..|+.+.+..|....+
T Consensus       141 C~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~n-ei~------------slpsql~~l~slr~l~vrRn~l~~l  204 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKN-EIQ------------SLPSQLGYLTSLRDLNVRRNHLEDL  204 (722)
T ss_pred             hcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhh-hhh------------hchHHhhhHHHHHHHHHhhhhhhhC
Confidence            8887 899999988 78888887 888899999999998 665            4556677777777776666655444


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +.                             .+..+ .|..||++.|.+..++.++          ..+..|++|.|.+|
T Consensus       205 p~-----------------------------El~~L-pLi~lDfScNkis~iPv~f----------r~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  205 PE-----------------------------ELCSL-PLIRLDFSCNKISYLPVDF----------RKMRHLQVLQLENN  244 (722)
T ss_pred             CH-----------------------------HHhCC-ceeeeecccCceeecchhh----------hhhhhheeeeeccC
Confidence            32                             22222 3777788888888777766          56777888888877


Q ss_pred             cccccCc----ccCCCCccEEeeccC
Q 017525          240 KFRHATW----LFLAPNLKRVEIDNC  261 (370)
Q Consensus       240 ~l~~~~~----l~~l~~L~~L~L~~~  261 (370)
                      .++..+.    -+...-.+.|+...|
T Consensus       245 PLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  245 PLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CCCCChHHHHhccceeeeeeecchhc
Confidence            7766543    233444566666655

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.05  E-value=2.7e-11  Score=107.62  Aligned_cols=88  Identities=22%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc---CcccC
Q 017525          173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFL  249 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~  249 (370)
                      |..|++.+...+..........++.|..|+++.+.+.++..-..+   ..--...+++|++|++..|++.+.   ..+..
T Consensus       248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~---s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~  324 (505)
T KOG3207|consen  248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVE---SLDKTHTFPKLEYLNISENNIRDWRSLNHLRT  324 (505)
T ss_pred             HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCcc---chhhhcccccceeeecccCccccccccchhhc
Confidence            444444444444433344556677777777777777665421100   000015678888888888865444   33455


Q ss_pred             CCCccEEeeccCcc
Q 017525          250 APNLKRVEIDNCQD  263 (370)
Q Consensus       250 l~~L~~L~L~~~~~  263 (370)
                      +++|+.|.+..++.
T Consensus       325 l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  325 LENLKHLRITLNYL  338 (505)
T ss_pred             cchhhhhhcccccc
Confidence            67777777655553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.03  E-value=1.4e-10  Score=98.55  Aligned_cols=213  Identities=17%  Similarity=0.120  Sum_probs=139.4

Q ss_pred             hhhccccCCEEeccCCc-------cc--ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525           55 EISKVVSLQHLDLSHSR-------IE--SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR  125 (370)
Q Consensus        55 ~~~~l~~L~~L~l~~~~-------l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  125 (370)
                      .+..+..|.+|.+++..       |.  .+|..+..+.+|+.+.++.|. ...+.. +...=|.|+.+.+... .++..+
T Consensus       177 ildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~-~~~~kptl~t~~v~~s-~~~~~~  253 (490)
T KOG1259|consen  177 VLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVD-IELLKPTLQTICVHNT-TIQDVP  253 (490)
T ss_pred             HHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheec-eeecCchhheeeeecc-cccccc
Confidence            33445667777766552       11  234455567778888887772 222222 1223356777777554 333222


Q ss_pred             cccc--------c----CCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccc
Q 017525          126 DSIL--------F----GDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLA  193 (370)
Q Consensus       126 ~~~~--------~----~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~  193 (370)
                      .-++        +    ............++.|+.+++++|.+..+..-.....    .++.|+++...-.+..   .++
T Consensus       254 ~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~P----kir~L~lS~N~i~~v~---nLa  326 (490)
T KOG1259|consen  254 SLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAP----KLRRLILSQNRIRTVQ---NLA  326 (490)
T ss_pred             cccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhcc----ceeEEeccccceeeeh---hhh
Confidence            1111        0    0122234456678899999999999877654332211    3677777665443333   578


Q ss_pred             ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhcccc
Q 017525          194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKF  273 (370)
Q Consensus       194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  273 (370)
                      .+++|..||+++|.+..+..+-          ..+-++++|.+++|.++++..++++-+|..|++++|. ++.+..    
T Consensus       327 ~L~~L~~LDLS~N~Ls~~~Gwh----------~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~lde----  391 (490)
T KOG1259|consen  327 ELPQLQLLDLSGNLLAECVGWH----------LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ-IEELDE----  391 (490)
T ss_pred             hcccceEeecccchhHhhhhhH----------hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc-hhhHHH----
Confidence            8899999999999998775332          5688999999999999999889999999999999986 443321    


Q ss_pred             CCCcccccCCcccccccccccccccc
Q 017525          274 GEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       274 ~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                             ...++++|+|+.+.+.+++
T Consensus       392 -------V~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  392 -------VNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             -------hcccccccHHHHHhhcCCC
Confidence                   1368899999999999875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=5.6e-11  Score=105.64  Aligned_cols=215  Identities=18%  Similarity=0.172  Sum_probs=140.1

Q ss_pred             ccccCC-CCCCCCCEEecCCCcCCCCCh-HHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccCc-
Q 017525            6 ENLVES-PVCPRLRTLFLSSNIFHRVNS-DFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         6 ~~l~~~-~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      .++.+. +++++|+.+.|.++.+...+. .....|++++.|+|+.|-     .+..-...+|+|+.|+++.|++..... 
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s  190 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS  190 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc
Confidence            344444 788899999999887765553 336889999999999885     333445778999999999997753222 


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       .-..+++|+.|.++.|...+.--......+|+|+.|++.+|..+.            ........++.|+.|+++.|..
T Consensus       191 ~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~------------~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  191 NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIIL------------IKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccc------------eecchhhhhhHHhhccccCCcc
Confidence             123678889999998844332222235678899999998883221            2223344567888889998888


Q ss_pred             hhhHhhhcCCCCCccccCcEEecCcC--CCCccccc---cccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525          157 HAFQRLLGSCMPQYVSTPSLCLSHFN--NSKSLGVF---SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL  231 (370)
Q Consensus       157 ~~~~~~~~~~~~~~l~L~~l~l~~~~--~~~~~~~~---~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L  231 (370)
                      .++........+++  |..+.+..+.  .+...+..   ....++.|++|++..|.+.++..--        -...+++|
T Consensus       259 i~~~~~~~~~~l~~--L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~--------~l~~l~nl  328 (505)
T KOG3207|consen  259 IDFDQGYKVGTLPG--LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN--------HLRTLENL  328 (505)
T ss_pred             cccccccccccccc--hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc--------hhhccchh
Confidence            77776666666665  4444444332  22222111   1356789999999998887653211        00456777


Q ss_pred             cEEEEeccccc
Q 017525          232 KNVYISRSKFR  242 (370)
Q Consensus       232 ~~L~l~~~~l~  242 (370)
                      +.|.+..+.++
T Consensus       329 k~l~~~~n~ln  339 (505)
T KOG3207|consen  329 KHLRITLNYLN  339 (505)
T ss_pred             hhhhccccccc
Confidence            77777776553

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.93  E-value=1.3e-09  Score=88.13  Aligned_cols=113  Identities=24%  Similarity=0.291  Sum_probs=55.0

Q ss_pred             CcccccccCCC-CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhh-hccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESP-VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEI-SKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~-~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      +|.|+.+.... .+.+|++|++++|.|+.+..  +..++.|++|++++|.  .+...+ ..+++|++|++++|+|..+..
T Consensus        28 ~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~  105 (175)
T PF14580_consen   28 GNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNE  105 (175)
T ss_dssp             --------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCC
T ss_pred             ccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHH
Confidence            46777777664 68999999999999998865  7889999999999999  554445 468999999999999875543


Q ss_pred             --ccccCCcccEEeccCcccccccC---cccccCCCCCcEEEccc
Q 017525           78 --EFKCLVNLKCLNLEYTYGISRIP---PKVISNLKILETLRMYE  117 (370)
Q Consensus        78 --~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~  117 (370)
                        .++.+++|+.|++.+| .+...+   ..++..+|+|+.||-..
T Consensus       106 l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  106 LEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             CGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             hHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEE
Confidence              5778999999999998 444333   34678899999998753

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=2e-09  Score=100.44  Aligned_cols=175  Identities=25%  Similarity=0.350  Sum_probs=90.6

Q ss_pred             hcCCCCcEEEccCCC--cchhhhhccc-cCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525           36 QSMASLRVLKWSYSN--PLLFEISKVV-SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET  112 (370)
Q Consensus        36 ~~l~~L~~L~l~~~~--~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  112 (370)
                      ...+.+..|++.++.  .++.....+. +|+.|+++++.+..+|..++.+++|+.|++++| .+..++.. .+.+++|+.
T Consensus       113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~-~~~~~~L~~  190 (394)
T COG4886         113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKL-LSNLSNLNN  190 (394)
T ss_pred             hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhh-hhhhhhhhh
Confidence            344555555555555  4444444442 555555555555555545555555555555555 44444442 235555555


Q ss_pred             EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525          113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL  192 (370)
Q Consensus       113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l  192 (370)
                      |++++| .+..++            ........|+++.++.+.                           ....  ...+
T Consensus       191 L~ls~N-~i~~l~------------~~~~~~~~L~~l~~~~N~---------------------------~~~~--~~~~  228 (394)
T COG4886         191 LDLSGN-KISDLP------------PEIELLSALEELDLSNNS---------------------------IIEL--LSSL  228 (394)
T ss_pred             eeccCC-ccccCc------------hhhhhhhhhhhhhhcCCc---------------------------ceec--chhh
Confidence            555555 444222            111122234444444332                           1111  1234


Q ss_pred             cccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcch
Q 017525          193 ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       193 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~  264 (370)
                      ..+..+..+.+.+|.+..+....          ..++++++|++++|.+++++.++.+.+|+.|+++++...
T Consensus       229 ~~~~~l~~l~l~~n~~~~~~~~~----------~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         229 SNLKNLSGLELSNNKLEDLPESI----------GNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             hhcccccccccCCceeeeccchh----------ccccccceeccccccccccccccccCccCEEeccCcccc
Confidence            45555666666666655432111          456667777777777777766667777777777776543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=1.9e-10  Score=97.80  Aligned_cols=133  Identities=22%  Similarity=0.204  Sum_probs=109.1

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEec
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNL   90 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l   90 (370)
                      .-+..|+.+|+++|.|+.+.++ ++-.|.+++|++|+|. ..-..+..+++|+.||+++|.++++..--.++.|.++|.+
T Consensus       281 dTWq~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             chHhhhhhccccccchhhhhhh-hhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            3467799999999999999888 7899999999999999 4445588999999999999998876654557889999999


Q ss_pred             cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      +.| .+..+..  ++++-+|..||+.+| .+.++          .....+++++.|+.+.+.+|.....
T Consensus       360 a~N-~iE~LSG--L~KLYSLvnLDl~~N-~Ie~l----------deV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  360 AQN-KIETLSG--LRKLYSLVNLDLSSN-QIEEL----------DEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhh-hHhhhhh--hHhhhhheecccccc-chhhH----------HHhcccccccHHHHHhhcCCCcccc
Confidence            998 6665544  788899999999999 88754          3566778888888888888876543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.88  E-value=1.3e-09  Score=101.82  Aligned_cols=178  Identities=26%  Similarity=0.349  Sum_probs=137.0

Q ss_pred             CCCCCCCCEEecCCCcCCCCChHHHhcCC-CCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525           11 SPVCPRLRTLFLSSNIFHRVNSDFFQSMA-SLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC   87 (370)
Q Consensus        11 ~~~l~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~   87 (370)
                      ...++.++.|++.++.+.++++. ..... +|++|+++++.  .+|..+..+++|+.|++++|.+..+|...+..++|+.
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~  190 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN  190 (394)
T ss_pred             hhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence            35668899999999999999886 45553 99999999999  7777889999999999999999999988779999999


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM  167 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  167 (370)
                      |+++++ .+..+|.. +..+..|+++.+.+| ...            ..+..+..+.++..+.+..+....+        
T Consensus       191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N-~~~------------~~~~~~~~~~~l~~l~l~~n~~~~~--------  247 (394)
T COG4886         191 LDLSGN-KISDLPPE-IELLSALEELDLSNN-SII------------ELLSSLSNLKNLSGLELSNNKLEDL--------  247 (394)
T ss_pred             eeccCC-ccccCchh-hhhhhhhhhhhhcCC-cce------------ecchhhhhcccccccccCCceeeec--------
Confidence            999998 77888874 556777999999988 332            2344455555555544333322111        


Q ss_pred             CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc
Q 017525          168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA  244 (370)
Q Consensus       168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  244 (370)
                                           ...+..++.+++|++++|.+++++. .          ....++++|+++++.+..+
T Consensus       248 ---------------------~~~~~~l~~l~~L~~s~n~i~~i~~-~----------~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         248 ---------------------PESIGNLSNLETLDLSNNQISSISS-L----------GSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             ---------------------cchhccccccceecccccccccccc-c----------cccCccCEEeccCcccccc
Confidence                                 1246667789999999999998865 2          5789999999999966654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.88  E-value=3.6e-11  Score=101.88  Aligned_cols=183  Identities=16%  Similarity=0.113  Sum_probs=128.5

Q ss_pred             CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcc
Q 017525          108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL  187 (370)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~  187 (370)
                      ..||++|++.. .++.          ......+..+.+|+.+.+.+....+.-......+-   +|+.++++.|++.+..
T Consensus       185 sRlq~lDLS~s-~it~----------stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~---~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  185 SRLQHLDLSNS-VITV----------STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS---NLVRLNLSMCSGFTEN  250 (419)
T ss_pred             hhhHHhhcchh-heeH----------HHHHHHHHHHHhhhhccccccccCcHHHHHHhccc---cceeeccccccccchh
Confidence            35889999876 5541          14455677778888888887765443222211111   5889999999999887


Q ss_pred             ccc-cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc--cc--cccCc-ccCCCCccEEeeccC
Q 017525          188 GVF-SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS--KF--RHATW-LFLAPNLKRVEIDNC  261 (370)
Q Consensus       188 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~l--~~~~~-l~~l~~L~~L~L~~~  261 (370)
                      ++. .+..++.|..|+++++.+..-.....-       .+.-++|+.|+|+|+  ++  +++.. ...+|+|.+|||+.|
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V-------~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~  323 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFLFTEKVTVAV-------AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS  323 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhccchhhhHHH-------hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence            653 466889999999999776543332211       145689999999999  33  33433 356999999999999


Q ss_pred             cchHHhhhccccCCCcccccCCccccccccccccccccccc-cccCCCccCCCcceEeecCCC
Q 017525          262 QDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK-TVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      ..+++..            ...+-.|+.|++|.++.|+.+. .........|+|.+|++.+|-
T Consensus       324 v~l~~~~------------~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  324 VMLKNDC------------FQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccCchH------------HHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            8877642            2356789999999999998653 222345579999999998873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=1.7e-10  Score=105.86  Aligned_cols=142  Identities=24%  Similarity=0.295  Sum_probs=118.2

Q ss_pred             CcccccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      .|++.++|.. ..|-.|..+.+.+|.+..+|+. ++++..|.+|+++.|.  .+|..++.|+ |+.|-+++|+++.+|..
T Consensus        84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~  161 (722)
T KOG0532|consen   84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEE  161 (722)
T ss_pred             ccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcc
Confidence            4677788887 6788899999999999999888 8999999999999998  8888888776 99999999999999999


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      ++..+.|..|+.+.| .+..+|.. ++++.+|+.|.+..| ++.            ..+.++..+ .|.+||++.|++..
T Consensus       162 ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn-~l~------------~lp~El~~L-pLi~lDfScNkis~  225 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRN-HLE------------DLPEELCSL-PLIRLDFSCNKISY  225 (722)
T ss_pred             cccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhh-hhh------------hCCHHHhCC-ceeeeecccCceee
Confidence            999999999999998 66777776 899999999999999 666            344555533 35678888887766


Q ss_pred             hHh
Q 017525          159 FQR  161 (370)
Q Consensus       159 ~~~  161 (370)
                      ++.
T Consensus       226 iPv  228 (722)
T KOG0532|consen  226 LPV  228 (722)
T ss_pred             cch
Confidence            554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.4e-10  Score=96.99  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=46.4

Q ss_pred             cccccCcEEEEecc-cccc--cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          226 SGFHSLKNVYISRS-KFRH--ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       226 ~~~~~L~~L~l~~~-~l~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                      ..+|+|..|+|+.| .+++  +..+.+++.|++|.++.|..+....            .-.+...|.|.+|++.+|
T Consensus       310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~------------~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPET------------LLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHH------------eeeeccCcceEEEEeccc
Confidence            67889999999888 6665  3346788999999999998765332            125677889999999887

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.70  E-value=1.2e-08  Score=67.84  Aligned_cols=58  Identities=31%  Similarity=0.410  Sum_probs=39.7

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcc
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRI   72 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l   72 (370)
                      |+|++|++++|.++.+++.+|.++++|++|++++|.   ..+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            567778888777777777667777777777777666   3334566667777777666653

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=3.1e-09  Score=92.26  Aligned_cols=251  Identities=17%  Similarity=0.127  Sum_probs=154.2

Q ss_pred             HhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcc----cccCc-------ccccCCcccEEeccCcccc
Q 017525           35 FQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRI----ESLPI-------EFKCLVNLKCLNLEYTYGI   96 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l----~~lp~-------~~~~l~~L~~L~l~~~~~~   96 (370)
                      ...+..+..|+++++.       .+...+.+.++|+..+++.-..    .++|.       .+..+++|+.+++|+|-+-
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G  105 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG  105 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence            5667889999999998       4455566778899888886522    24554       2446789999999998433


Q ss_pred             cccCc---ccccCCCCCcEEEccccCCCcccccccccCC--cchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           97 SRIPP---KVISNLKILETLRMYECAALPQARDSILFGD--CRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        97 ~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      ...+.   ..+.++..|++|.+.+| .++...-+..+..  +.........-+.|+++....|+.........       
T Consensus       106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~-------  177 (382)
T KOG1909|consen  106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATAL-------  177 (382)
T ss_pred             ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHH-------
Confidence            22221   23567889999999998 7663210000000  00011122333567777666665433221110       


Q ss_pred             ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------C
Q 017525          172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------T  245 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~  245 (370)
                                       ...+...+.|+.+.++.|.+..-.......+     ...+++|+.|+|..|-++..      .
T Consensus       178 -----------------A~~~~~~~~leevr~~qN~I~~eG~~al~ea-----l~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  178 -----------------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEA-----LEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             -----------------HHHHHhccccceEEEecccccCchhHHHHHH-----HHhCCcceeeecccchhhhHHHHHHHH
Confidence                             1234556889999999988765433211111     16799999999999955432      3


Q ss_pred             cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccc----cccCCCccCCCcceEeecC
Q 017525          246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK----TVHSKALPFPHLKEMSVDR  321 (370)
Q Consensus       246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~----~i~~~~~~~~~L~~L~l~~  321 (370)
                      .+..+++|++|++++|-.-..-.. ..       ........|+|+.|.+.+|.--.    .+.......|.|++|++.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~-a~-------~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng  307 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAI-AF-------VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG  307 (382)
T ss_pred             HhcccchheeecccccccccccHH-HH-------HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence            466789999999999974332110 00       01233458999999999984321    1222344588999999988


Q ss_pred             CC
Q 017525          322 CP  323 (370)
Q Consensus       322 c~  323 (370)
                      |.
T Consensus       308 N~  309 (382)
T KOG1909|consen  308 NR  309 (382)
T ss_pred             cc
Confidence            75

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.64  E-value=3.1e-08  Score=65.85  Aligned_cols=58  Identities=34%  Similarity=0.568  Sum_probs=45.2

Q ss_pred             ccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           60 VSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        60 ~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      ++|++|++++|+++.+|. .+..+++|++|++++| .+..++.++|.++++|++|++++|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCC
Confidence            467888888888887775 5677888888888877 566677666888888888888877

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.54  E-value=1.6e-08  Score=85.03  Aligned_cols=243  Identities=19%  Similarity=0.155  Sum_probs=150.1

Q ss_pred             CCCCCCEEecCCCcCCCC----ChHHHhcCCCCcEEEccCCC------cch-------hhhhccccCCEEeccCCccc-c
Q 017525           13 VCPRLRTLFLSSNIFHRV----NSDFFQSMASLRVLKWSYSN------PLL-------FEISKVVSLQHLDLSHSRIE-S   74 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~~~------~~~-------~~~~~l~~L~~L~l~~~~l~-~   74 (370)
                      -+..++.++|++|.|..-    -+..+.+-++|++.++++--      +++       ..+-.||+|+..+++.|.+. .
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            356788899999987631    22335667888888888754      222       34567889999999998764 3


Q ss_pred             cCc----ccccCCcccEEeccCcccccccCcccc-------------cCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525           75 LPI----EFKCLVNLKCLNLEYTYGISRIPPKVI-------------SNLKILETLRMYECAALPQARDSILFGDCRVLV  137 (370)
Q Consensus        75 lp~----~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  137 (370)
                      .|+    .+++-+.|++|.+++| .++.+..+-+             ..-|.|+......| .+.+-+       ..-..
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN-Rlengs-------~~~~a  178 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN-RLENGS-------KELSA  178 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc-hhccCc-------HHHHH
Confidence            343    4677888999999888 5554433222             23467888877777 555321       11223


Q ss_pred             hhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCC
Q 017525          138 EELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGG  217 (370)
Q Consensus       138 ~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~  217 (370)
                      ..+..+.+|+++.+..|.+..-                       +++......+..+.+|+.|++..|.++..+....+
T Consensus       179 ~~l~sh~~lk~vki~qNgIrpe-----------------------gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         179 ALLESHENLKEVKIQQNGIRPE-----------------------GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             HHHHhhcCceeEEeeecCcCcc-----------------------hhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            3445556777777776654211                       00111112345667899999999888766543322


Q ss_pred             CccccccccccccCcEEEEecccccc--cCc----c--cCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccc
Q 017525          218 EVKRVLEISGFHSLKNVYISRSKFRH--ATW----L--FLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFAR  289 (370)
Q Consensus       218 ~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~----l--~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  289 (370)
                      ..-     ..++.|+.|.+..|-++.  ...    +  ...|+|..|-..++..-.+++...++..      ..-...|-
T Consensus       236 ~al-----~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~------~e~~~~p~  304 (388)
T COG5238         236 DAL-----CEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNE------FEQDAVPL  304 (388)
T ss_pred             HHh-----cccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhh------hhhcccHH
Confidence            111     346779999999994433  221    1  2478999999988876655543222211      13356788


Q ss_pred             ccccccccc
Q 017525          290 LERLILEEL  298 (370)
Q Consensus       290 L~~L~l~~~  298 (370)
                      |..|.+.++
T Consensus       305 L~~le~ngN  313 (388)
T COG5238         305 LVDLERNGN  313 (388)
T ss_pred             HHHHHHccC
Confidence            888888765

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=2.7e-07  Score=90.71  Aligned_cols=103  Identities=22%  Similarity=0.298  Sum_probs=72.1

Q ss_pred             CCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEecc
Q 017525           17 LRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        17 L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~   91 (370)
                      ++.|+|++|.+. .+|.. +..+++|+.|+|++|.   .+|..++.+++|++|++++|.++ .+|..++.+++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            667777777776 34544 6777888888887776   66777777778888888887775 677777777788888887


Q ss_pred             CcccccccCcccccC-CCCCcEEEccccCCC
Q 017525           92 YTYGISRIPPKVISN-LKILETLRMYECAAL  121 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~  121 (370)
                      +|...+.+|.. +.. ..++..+++.+|..+
T Consensus       499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAA-LGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChH-HhhccccCceEEecCCccc
Confidence            77666667765 443 345666777766333

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.52  E-value=1.1e-08  Score=95.82  Aligned_cols=214  Identities=23%  Similarity=0.207  Sum_probs=120.2

Q ss_pred             CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      +..+..+.+..+.+..+-.. +..+++|..|++.++.  .+...+..+++|++|++++|.|+.+. .+..++.|+.|++.
T Consensus        71 l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~  148 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLS  148 (414)
T ss_pred             hHhHHhhccchhhhhhhhcc-cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheec
Confidence            44555555666666553222 4667777777777777  33333667777888888888777664 45566667788887


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      +| .+..+..  +..+++|+.+++++| .+..++         .. . +..+.+++.+.+..+.+..+..+.....+..+
T Consensus       149 ~N-~i~~~~~--~~~l~~L~~l~l~~n-~i~~ie---------~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~  213 (414)
T KOG0531|consen  149 GN-LISDISG--LESLKSLKLLDLSYN-RIVDIE---------ND-E-LSELISLEELDLGGNSIREIEGLDLLKKLVLL  213 (414)
T ss_pred             cC-cchhccC--CccchhhhcccCCcc-hhhhhh---------hh-h-hhhccchHHHhccCCchhcccchHHHHHHHHh
Confidence            77 5555544  455777777777777 554322         00 1 35556666667776666554433322221110


Q ss_pred             ccCcEEecCcCCCCccccccccccCC--CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccC
Q 017525          172 STPSLCLSHFNNSKSLGVFSLASLRH--LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFL  249 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~  249 (370)
                      .+..-.+...        ..+..+..  |+.+++++|.+..++...          ..+..+..|++.++++.....+..
T Consensus       214 ~l~~n~i~~~--------~~l~~~~~~~L~~l~l~~n~i~~~~~~~----------~~~~~l~~l~~~~n~~~~~~~~~~  275 (414)
T KOG0531|consen  214 SLLDNKISKL--------EGLNELVMLHLRELYLSGNRISRSPEGL----------ENLKNLPVLDLSSNRISNLEGLER  275 (414)
T ss_pred             hcccccceec--------cCcccchhHHHHHHhcccCccccccccc----------cccccccccchhhccccccccccc
Confidence            0111111100        11222222  777777777776553111          456777777777776666555555


Q ss_pred             CCCccEEeeccCc
Q 017525          250 APNLKRVEIDNCQ  262 (370)
Q Consensus       250 l~~L~~L~L~~~~  262 (370)
                      .+.+..+....+.
T Consensus       276 ~~~~~~~~~~~~~  288 (414)
T KOG0531|consen  276 LPKLSELWLNDNK  288 (414)
T ss_pred             cchHHHhccCcch
Confidence            5555555555544

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=3.9e-07  Score=77.82  Aligned_cols=219  Identities=16%  Similarity=0.101  Sum_probs=117.1

Q ss_pred             EEecCCCcCCCCCh--HHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCccc----ccCcccccCCcccE
Q 017525           19 TLFLSSNIFHRVNS--DFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIE----SLPIEFKCLVNLKC   87 (370)
Q Consensus        19 ~L~l~~~~i~~~~~--~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~----~lp~~~~~l~~L~~   87 (370)
                      .|-+.++.|.....  .+-..+..++.++|.+|.     ++...+.++|+|++|+++.|.+.    .+|   ....+|+.
T Consensus        49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~  125 (418)
T KOG2982|consen   49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRV  125 (418)
T ss_pred             hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceEE
Confidence            45555666654322  233457788888888887     55666678888888888888654    333   24557788


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM  167 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  167 (370)
                      |-+.+....+.-....+..+|.++.|.++.| .+..+-    .+++..    -.-.+.++++.+..|....+........
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n----~Dd~c~----e~~s~~v~tlh~~~c~~~~w~~~~~l~r  196 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN-SLRQLN----LDDNCI----EDWSTEVLTLHQLPCLEQLWLNKNKLSR  196 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccc-hhhhhc----cccccc----cccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence            8887763322222223567777888877777 332111    010000    0122355556666665555444333322


Q ss_pred             CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCccccee-ccCCCccccccccccccCcEEEEeccccccc-C
Q 017525          168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISGFHSLKNVYISRSKFRHA-T  245 (370)
Q Consensus       168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~  245 (370)
                      .-. ++..+.+.+++-.+...-.....+|.+..|+++.+.+.+.+. +..         ..++.|..|-++++.+.+. .
T Consensus       197 ~Fp-nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~L---------n~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  197 IFP-NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDAL---------NGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             hcc-cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHH---------cCCchhheeeccCCccccccc
Confidence            111 344444444443333323344555666677777666655432 111         4566777776666644331 1


Q ss_pred             -------cccCCCCccEEeec
Q 017525          246 -------WLFLAPNLKRVEID  259 (370)
Q Consensus       246 -------~l~~l~~L~~L~L~  259 (370)
                             -++.+++++.|+=+
T Consensus       267 ~~err~llIaRL~~v~vLNGs  287 (418)
T KOG2982|consen  267 GGERRFLLIARLTKVQVLNGS  287 (418)
T ss_pred             CCcceEEEEeeccceEEecCc
Confidence                   13456666666433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.28  E-value=1.1e-07  Score=89.20  Aligned_cols=192  Identities=22%  Similarity=0.304  Sum_probs=132.0

Q ss_pred             hcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEE
Q 017525           36 QSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL  113 (370)
Q Consensus        36 ~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  113 (370)
                      ..+..+..+.+..+.  ..-..++.+.+|++|++.+|.++.+...+..+++|++|++++| .++.+..  +..++.|+.|
T Consensus        69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~--l~~l~~L~~L  145 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEG--LSTLTLLKEL  145 (414)
T ss_pred             HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccc--hhhccchhhh
Confidence            356666667777766  3344578889999999999999888765889999999999998 6666654  6788889999


Q ss_pred             EccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhh--hcCCCCCccccCcEEecCcCCCCcccccc
Q 017525          114 RMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL--LGSCMPQYVSTPSLCLSHFNNSKSLGVFS  191 (370)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~--~~~~~~~~l~L~~l~l~~~~~~~~~~~~~  191 (370)
                      ++.+| .+..             +..+..+..|+.++++.+.+..++..  .....     ++.+.+.........   .
T Consensus       146 ~l~~N-~i~~-------------~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~-----l~~l~l~~n~i~~i~---~  203 (414)
T KOG0531|consen  146 NLSGN-LISD-------------ISGLESLKSLKLLDLSYNRIVDIENDELSELIS-----LEELDLGGNSIREIE---G  203 (414)
T ss_pred             eeccC-cchh-------------ccCCccchhhhcccCCcchhhhhhhhhhhhccc-----hHHHhccCCchhccc---c
Confidence            99999 7753             33455588888899998888777662  33332     444444443332222   2


Q ss_pred             ccccCCCcEEEEecCCcccceeccCCCccccccccccc--cCcEEEEeccccccc-CcccCCCCccEEeeccCcc
Q 017525          192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFH--SLKNVYISRSKFRHA-TWLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       192 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~-~~l~~l~~L~~L~L~~~~~  263 (370)
                      +..+..+..+++..|.+..+...           ....  +|+.+++.++++... ..+..+.+++.|++..+..
T Consensus       204 ~~~~~~l~~~~l~~n~i~~~~~l-----------~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~  267 (414)
T KOG0531|consen  204 LDLLKKLVLLSLLDNKISKLEGL-----------NELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRI  267 (414)
T ss_pred             hHHHHHHHHhhcccccceeccCc-----------ccchhHHHHHHhcccCccccccccccccccccccchhhccc
Confidence            33334444556666777665321           1223  388999999977776 5677788888888887653

>PLN03150 hypothetical protein; Provisional

Probab=98.25  E-value=2.4e-06  Score=84.04  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=59.0

Q ss_pred             CcEEEccCCC---cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcc
Q 017525           41 LRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY  116 (370)
Q Consensus        41 L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~  116 (370)
                      ++.|+|+++.   .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence            6667777776   66777777788888888887775 67777777788888888877665666665 7777888888887


Q ss_pred             ccCCCc
Q 017525          117 ECAALP  122 (370)
Q Consensus       117 ~~~~~~  122 (370)
                      +| .+.
T Consensus       499 ~N-~l~  503 (623)
T PLN03150        499 GN-SLS  503 (623)
T ss_pred             CC-ccc
Confidence            77 443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.08  E-value=1.9e-06  Score=84.74  Aligned_cols=137  Identities=20%  Similarity=0.119  Sum_probs=90.2

Q ss_pred             CCCCCEEecCCC-cCC-CCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525           14 CPRLRTLFLSSN-IFH-RVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC   87 (370)
Q Consensus        14 l~~L~~L~l~~~-~i~-~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~   87 (370)
                      -.+|+.|++++. .+. ..+...-..+|.|+.|.+++-.    ++.....++|+|+.||+++++++.+ .+++++++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            357888888887 333 4444545568999999998876    4445556788999999999998877 57889999999


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      |.+.+=..........+.+|++|++||++....... +     ..-......-..+++|+.||.++....
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~-----~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-T-----KIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccc-h-----HHHHHHHHhcccCccccEEecCCcchh
Confidence            888765333222222367889999999987622221 0     000011222234678888888876543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.05  E-value=1.1e-07  Score=90.33  Aligned_cols=129  Identities=26%  Similarity=0.303  Sum_probs=79.1

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcc-cccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~   89 (370)
                      ...-.|.+.+.+.|.+..+... +.-++.|+.|+|+.|+ .--+.+..|++|++|||++|.+..+|.. ...+. |+.|.
T Consensus       161 ~~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  161 PVWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeee
Confidence            3445566666666666666555 6667777777777777 4344667777777777777777766652 22333 77777


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                      +++| .+..+-.  +.++++|+.||+++| .+.+.          .....+..+..|+.|.+.+|..
T Consensus       239 lrnN-~l~tL~g--ie~LksL~~LDlsyN-ll~~h----------seL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  239 LRNN-ALTTLRG--IENLKSLYGLDLSYN-LLSEH----------SELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eccc-HHHhhhh--HHhhhhhhccchhHh-hhhcc----------hhhhHHHHHHHHHHHhhcCCcc
Confidence            7776 4444433  667777777777777 44321          2233344455566666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.03  E-value=5.8e-06  Score=50.42  Aligned_cols=34  Identities=44%  Similarity=0.617  Sum_probs=21.9

Q ss_pred             ccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525           60 VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        60 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~   93 (370)
                      ++|++|++++|+++.+|..++++++|+.|++++|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            3566777777777766665667777777777766

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.01  E-value=3.2e-06  Score=72.39  Aligned_cols=210  Identities=14%  Similarity=0.092  Sum_probs=121.7

Q ss_pred             CCCCCCCEEecCCCcCCCCCh--HHHhcCCCCcEEEccCCC--cchhhh-hccccCCEEeccCCcc--cccCcccccCCc
Q 017525           12 PVCPRLRTLFLSSNIFHRVNS--DFFQSMASLRVLKWSYSN--PLLFEI-SKVVSLQHLDLSHSRI--ESLPIEFKCLVN   84 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~--~~~~~l~~L~~L~l~~~~--~~~~~~-~~l~~L~~L~l~~~~l--~~lp~~~~~l~~   84 (370)
                      ..++.++.++|.+|.|+...+  .++.++|.|++|+++.|+  ..-... -.+.+|+.|.+.++.+  +........+|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            467889999999998875433  347889999999999997  111111 3557899999999976  355566778999


Q ss_pred             ccEEeccCccccc-ccCcccccC-CCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhh
Q 017525           85 LKCLNLEYTYGIS-RIPPKVISN-LKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL  162 (370)
Q Consensus        85 L~~L~l~~~~~~~-~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~  162 (370)
                      ++.|+++.|..-. .+...-+.. -+.++.+....| ....|.         ....-...++++..+-+..+...+....
T Consensus       148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c-~~~~w~---------~~~~l~r~Fpnv~sv~v~e~PlK~~s~e  217 (418)
T KOG2982|consen  148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPC-LEQLWL---------NKNKLSRIFPNVNSVFVCEGPLKTESSE  217 (418)
T ss_pred             hhhhhhccchhhhhccccccccccchhhhhhhcCCc-HHHHHH---------HHHhHHhhcccchheeeecCcccchhhc
Confidence            9999999873211 011110111 224555656555 333222         1222223346777666666655444333


Q ss_pred             hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525          163 LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI  236 (370)
Q Consensus       163 ~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (370)
                      .....++.  +..|.++...--....+..+.+++.|+.|.++.+.+.+--.   +..+..+-+..+++++.|+=
T Consensus       218 k~se~~p~--~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~---~~err~llIaRL~~v~vLNG  286 (418)
T KOG2982|consen  218 KGSEPFPS--LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR---GGERRFLLIARLTKVQVLNG  286 (418)
T ss_pred             ccCCCCCc--chhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc---CCcceEEEEeeccceEEecC
Confidence            32222222  22333333333334445678889999999999876654311   11111122256777777643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.96  E-value=2.8e-07  Score=87.51  Aligned_cols=128  Identities=20%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             CCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccc
Q 017525          143 LEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV  222 (370)
Q Consensus       143 l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  222 (370)
                      +..|.+.+++.|....+..-.....    +++.|++++.+-....   .+..++.|++|||+.|.+..++-...      
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~----ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~------  229 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLP----ALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSM------  229 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHH----HhhhhccchhhhhhhH---HHHhcccccccccccchhccccccch------
Confidence            3455555566665543332221111    3555555544332222   56678899999999999998864321      


Q ss_pred             ccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          223 LEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       223 ~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                         ..+. |+.|+|++|.++.+..+.++.+|+.||+++|-...+--            ...+..+..|+.|.|.+++
T Consensus       230 ---~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hse------------L~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  230 ---VGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSE------------LEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             ---hhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchh------------hhHHHHHHHHHHHhhcCCc
Confidence               3344 99999999998888888899999999999986544321            1256677788888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.87  E-value=2e-05  Score=48.09  Aligned_cols=36  Identities=31%  Similarity=0.405  Sum_probs=18.0

Q ss_pred             CCcEEEccCCC--cchhhhhccccCCEEeccCCccccc
Q 017525           40 SLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus        40 ~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +|++|++++|.  .+|..++++++|++|++++|.++.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            34444444444  3444455555555555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.82  E-value=2.2e-05  Score=63.64  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccc---cccCcccCCCCccEEeeccCcchHHh
Q 017525          191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKF---RHATWLFLAPNLKRVEIDNCQDMKEI  267 (370)
Q Consensus       191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l---~~~~~l~~l~~L~~L~L~~~~~~~~~  267 (370)
                      .|..++.|.+|.+..|+++.++....         ..+++|+.|.+.+|++   .++..+..+|.|+.|.+-+|+... .
T Consensus        59 ~lp~l~rL~tLll~nNrIt~I~p~L~---------~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~-k  128 (233)
T KOG1644|consen   59 NLPHLPRLHTLLLNNNRITRIDPDLD---------TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH-K  128 (233)
T ss_pred             cCCCccccceEEecCCcceeeccchh---------hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhc-c
Confidence            56778899999999999999876553         5688999999999854   456678899999999999887422 2


Q ss_pred             hhccccCCCcccccCCccccccccccccccc
Q 017525          268 IDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                         .++.      ...+..+|+|+.|++++-
T Consensus       129 ---~~YR------~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  129 ---KNYR------LYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ---cCce------eEEEEecCcceEeehhhh
Confidence               1111      136778999999999875

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.80  E-value=4e-05  Score=62.15  Aligned_cols=101  Identities=17%  Similarity=0.156  Sum_probs=72.4

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCc--ccccCCcccEEe
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPI--EFKCLVNLKCLN   89 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~   89 (370)
                      .....+||++|++..++-  +..++.|.+|.+.+|.  . .|.--..+++|..|.+.+|++..+..  .+..||+|+.|.
T Consensus        42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            456678888887776654  6788888888888888  3 33333446778888888888765543  466788888888


Q ss_pred             ccCccccc---ccCcccccCCCCCcEEEcccc
Q 017525           90 LEYTYGIS---RIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        90 l~~~~~~~---~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +-+| .+.   .+...++..+++|++||+.+-
T Consensus       120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             ecCC-chhcccCceeEEEEecCcceEeehhhh
Confidence            8776 332   344556888999999988743

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.76  E-value=0.00019  Score=65.67  Aligned_cols=54  Identities=26%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             cccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           59 VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        59 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +.+++.|++++|.++.+|.   --.+|+.|.+++|..+..+|.. +  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence            4555555555555555551   1223555555555444444432 2  134555555554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.63  E-value=4.1e-05  Score=75.54  Aligned_cols=110  Identities=25%  Similarity=0.263  Sum_probs=81.9

Q ss_pred             CCCCCCCEEecCCCcCCCC-ChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccC--cccccCCcccE
Q 017525           12 PVCPRLRTLFLSSNIFHRV-NSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLP--IEFKCLVNLKC   87 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~   87 (370)
                      .-+|.|+.|.+.+-.+..- -.....++++|..||+|+++ ....+++++++|+.|.+.+-.+..-.  ..+..+++|+.
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4689999999998755421 22346889999999999999 55588999999999999887765332  25678999999


Q ss_pred             EeccCccccccc--Ccc---cccCCCCCcEEEccccCCCc
Q 017525           88 LNLEYTYGISRI--PPK---VISNLKILETLRMYECAALP  122 (370)
Q Consensus        88 L~l~~~~~~~~~--~~~---~~~~l~~L~~L~l~~~~~~~  122 (370)
                      ||+|..+.....  ...   --..||.|+.||.+++ .+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCc-chh
Confidence            999987443321  100   0135899999999988 554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.56  E-value=3.8e-06  Score=71.29  Aligned_cols=101  Identities=24%  Similarity=0.205  Sum_probs=81.5

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCc--ccccCCcccEE
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPI--EFKCLVNLKCL   88 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L   88 (370)
                      +++.+++.|++.+|.+++|.-  ...|+.|++|.|+-|+ .....+..|++|++|+|..|.|..+..  .+.++|+|+.|
T Consensus        16 sdl~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   16 SDLENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             hHHHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            567889999999999987754  6899999999999999 666778999999999999999876654  57889999999


Q ss_pred             eccCccccccc----CcccccCCCCCcEEE
Q 017525           89 NLEYTYGISRI----PPKVISNLKILETLR  114 (370)
Q Consensus        89 ~l~~~~~~~~~----~~~~~~~l~~L~~L~  114 (370)
                      -|..|-..+.-    ...++.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99877544432    233566788888775

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.55  E-value=9.1e-06  Score=77.90  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=22.1

Q ss_pred             cccccccccccccccccCCCcc--CCCcceEeecCCCCCCCCC
Q 017525          289 RLERLILEELKNLKTVHSKALP--FPHLKEMSVDRCPLLKKLP  329 (370)
Q Consensus       289 ~L~~L~l~~~~~l~~i~~~~~~--~~~L~~L~l~~c~~L~~l~  329 (370)
                      .++.|.++.|...+.-......  ...++.+.+.+|+.+....
T Consensus       402 ~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~  444 (482)
T KOG1947|consen  402 SLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS  444 (482)
T ss_pred             ccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence            3667777766554433222111  4556666666666665433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.50  E-value=9.3e-06  Score=77.83  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=25.1

Q ss_pred             ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc
Q 017525          253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV  304 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i  304 (370)
                      ++.|+++.|..+++..-           ......+..++.+.+.+|..+...
T Consensus       403 l~~L~l~~~~~~t~~~l-----------~~~~~~~~~~~~l~~~~~~~~~~~  443 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGL-----------RCLADSCSNLKDLDLSGCRVITLK  443 (482)
T ss_pred             cceEecccCccccccch-----------HHHhhhhhccccCCccCcccccch
Confidence            78888888876654421           011111667788888887665544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.39  E-value=2.6e-05  Score=59.24  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=73.5

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..-..|+..++++|.++.+|+.+...++.+..|++++|.  .+|..+..++.|+.|+++.|.+...|..+..+.++-.|+
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld  129 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD  129 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence            445677888999999999999877777899999999998  888888889999999999999988888887788888888


Q ss_pred             ccCcccccccCc
Q 017525           90 LEYTYGISRIPP  101 (370)
Q Consensus        90 l~~~~~~~~~~~  101 (370)
                      ...+ ....++.
T Consensus       130 s~~n-a~~eid~  140 (177)
T KOG4579|consen  130 SPEN-ARAEIDV  140 (177)
T ss_pred             CCCC-ccccCcH
Confidence            8776 4444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.33  E-value=0.0006  Score=62.49  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCC-cccccCcccccCCcccEE
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHS-RIESLPIEFKCLVNLKCL   88 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L   88 (370)
                      .+.+++.|++++|.++.+|.  +  -.+|++|.+++|.   .+|..+  .++|++|++++| .+..+|..      |+.|
T Consensus        50 ~~~~l~~L~Is~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L  117 (426)
T PRK15386         50 EARASGRLYIKDCDIESLPV--L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL  117 (426)
T ss_pred             HhcCCCEEEeCCCCCcccCC--C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence            46778888888887777762  1  1358888888877   455444  257888888887 66666653      5555


Q ss_pred             eccC
Q 017525           89 NLEY   92 (370)
Q Consensus        89 ~l~~   92 (370)
                      ++..
T Consensus       118 ~L~~  121 (426)
T PRK15386        118 EIKG  121 (426)
T ss_pred             EeCC
Confidence            5544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.23  E-value=7e-05  Score=56.99  Aligned_cols=111  Identities=21%  Similarity=0.232  Sum_probs=87.0

Q ss_pred             CCCCCCCEEecCCCcCCCCChH--HHhcCCCCcEEEccCCC--cchhhhhc-cccCCEEeccCCcccccCcccccCCccc
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSD--FFQSMASLRVLKWSYSN--PLLFEISK-VVSLQHLDLSHSRIESLPIEFKCLVNLK   86 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~--~~~~l~~L~~L~l~~~~--~~~~~~~~-l~~L~~L~l~~~~l~~lp~~~~~l~~L~   86 (370)
                      .+-..+..++|++|++-.++..  .+....+|..+++++|.  .+|..+.. .+.++.|++.+|.+..+|..+..++.|+
T Consensus        24 edakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   24 EDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            3445667789999987766553  24556678888999998  77777754 4589999999999999999999999999


Q ss_pred             EEeccCcccccccCcccccCCCCCcEEEccccCCCcccc
Q 017525           87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR  125 (370)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  125 (370)
                      .++++.| .+...|.- +..+.++-.|+..+| ....++
T Consensus       104 ~lNl~~N-~l~~~p~v-i~~L~~l~~Lds~~n-a~~eid  139 (177)
T KOG4579|consen  104 SLNLRFN-PLNAEPRV-IAPLIKLDMLDSPEN-ARAEID  139 (177)
T ss_pred             hcccccC-ccccchHH-HHHHHhHHHhcCCCC-ccccCc
Confidence            9999998 55666654 667999999999888 444433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.12  E-value=0.00026  Score=60.17  Aligned_cols=219  Identities=15%  Similarity=0.067  Sum_probs=118.5

Q ss_pred             CCCCCCEEecCCCcCC----CCCh------HHHhcCCCCcEEEccCCC---c----chhhhhccccCCEEeccCCccccc
Q 017525           13 VCPRLRTLFLSSNIFH----RVNS------DFFQSMASLRVLKWSYSN---P----LLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~----~~~~------~~~~~l~~L~~L~l~~~~---~----~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +-.+|++.++++-...    .++.      .++..|++|+.++||+|.   .    +...+++-+.|.+|.+.+|++..+
T Consensus        56 ~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~  135 (388)
T COG5238          56 NVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI  135 (388)
T ss_pred             hhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence            4566777777664222    1222      124577888888888886   2    234456667888888888876532


Q ss_pred             C--------------cccccCCcccEEeccCcccccccCcc----cccCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525           76 P--------------IEFKCLVNLKCLNLEYTYGISRIPPK----VISNLKILETLRMYECAALPQARDSILFGDCRVLV  137 (370)
Q Consensus        76 p--------------~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  137 (370)
                      .              +....-|.|+......|+.-. .+..    .+..=..|+++.+..| .+..-      +...-..
T Consensus       136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~lk~vki~qN-gIrpe------gv~~L~~  207 (388)
T COG5238         136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENLKEVKIQQN-GIRPE------GVTMLAF  207 (388)
T ss_pred             chhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCceeEEeeec-CcCcc------hhHHHHH
Confidence            1              123456788888888874422 2211    1222357788888887 55421      1111233


Q ss_pred             hhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCcccc---cccc--ccCCCcEEEEecCCccc
Q 017525          138 EELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGV---FSLA--SLRHLQTLQLTYNDLDE  210 (370)
Q Consensus       138 ~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~---~~l~--~l~~L~~L~l~~~~l~~  210 (370)
                      ..+..+++|+.|++..|.++...+  +.....-.. .++.|.+++|-....-..   ..+.  ..|+|..|...+|.+..
T Consensus       208 ~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~-~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         208 LGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN-LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             HHHHHhCcceeeeccccchhhhhHHHHHHHhcccc-hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            445667888888888876644322  111111122 367888888854332211   1222  34677888777765432


Q ss_pred             --ceeccCCCccccccccccccCcEEEEeccccccc
Q 017525          211 --IKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA  244 (370)
Q Consensus       211 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  244 (370)
                        +-..++..    +-+...|-|..|.+.||+++..
T Consensus       287 ~~i~~~~l~~----~e~~~~p~L~~le~ngNr~~E~  318 (388)
T COG5238         287 GIILDISLNE----FEQDAVPLLVDLERNGNRIKEL  318 (388)
T ss_pred             ceeeeechhh----hhhcccHHHHHHHHccCcchhH
Confidence              11111111    1124555666666666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.05  E-value=0.00018  Score=60.87  Aligned_cols=57  Identities=32%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             cCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccC--cccccCCcccEEeccCc
Q 017525           37 SMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLP--IEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        37 ~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~   93 (370)
                      .+++|+.|.++.|.     .++.....+++|++|++++|++..+.  .....+.+|..|++.+|
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccC
Confidence            34445555555442     22222233355555555555443111  02334444445555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.99  E-value=0.0018  Score=49.86  Aligned_cols=101  Identities=18%  Similarity=0.322  Sum_probs=47.1

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cch-hhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLL-FEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL   88 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L   88 (370)
                      .++++|+.+.+.. .+..++...|.++++|+.+.+..+- .++ ..+.++++++.+.+.. .+..++. .+..+++|+.+
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             hCCCCCCEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            4556677777664 4556666666777777777766543 222 3445565677777654 4443433 34456677777


Q ss_pred             eccCcccccccCcccccCCCCCcEEEccc
Q 017525           89 NLEYTYGISRIPPKVISNLKILETLRMYE  117 (370)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  117 (370)
                      .+..+  +..++...+.++ +|+.+.+..
T Consensus        87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   87 DIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             EETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             ccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            76543  444444446665 666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=4.5e-05  Score=64.91  Aligned_cols=61  Identities=18%  Similarity=0.329  Sum_probs=33.9

Q ss_pred             cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc---CcccCCCCccEEeeccCc
Q 017525          191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~l~~L~~L~L~~~~  262 (370)
                      ...+++.|+.|.|+-|.++.+..           ...|++|+.|+|..|.+.++   ..+..+|+|+.|.|..|+
T Consensus        36 ic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence            44556666666666666655531           14566666666666544433   334556666666665543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.65  E-value=0.0038  Score=48.00  Aligned_cols=103  Identities=20%  Similarity=0.376  Sum_probs=58.3

Q ss_pred             ccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cch-hhhhccccCCEEeccCCcccccCc-c
Q 017525            4 HIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLL-FEISKVVSLQHLDLSHSRIESLPI-E   78 (370)
Q Consensus         4 ~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~   78 (370)
                      .++.++..  ..+++|+.+.+.++ +..++...|.+++.++.+.+...- .++ ..+..+++|+.+.+..+ +..++. .
T Consensus        22 ~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~   99 (129)
T PF13306_consen   22 TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSS   99 (129)
T ss_dssp             T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTECEEEETTT--BEEHTTT
T ss_pred             CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccccccccccccccccccccccccCcc-ccEEchhh
Confidence            45666665  67789999999885 888888889999999999997754 333 45667999999999775 655554 4


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCc
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILE  111 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  111 (370)
                      +..+ +|+.+.+..  .+..++...|.++++|+
T Consensus       100 f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen  100 FSNC-NLKEINIPS--NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--T--EEE-TT--B-SS----GGG------
T ss_pred             hcCC-CceEEEECC--CccEECCccccccccCC
Confidence            5666 899998875  35566666688887764

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.53  E-value=0.00025  Score=57.67  Aligned_cols=85  Identities=19%  Similarity=0.334  Sum_probs=56.4

Q ss_pred             CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccc--cCccc-CCCCccEEeeccCcchHHhhhcccc
Q 017525          198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRH--ATWLF-LAPNLKRVEIDNCQDMKEIIDSEKF  273 (370)
Q Consensus       198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~  273 (370)
                      ++.++-++..+...+.+-+         ..++.++.|.+.+| .+.+  +..++ -.++|+.|+|++|+.|++-.     
T Consensus       103 IeaVDAsds~I~~eGle~L---------~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G-----  168 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHL---------RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG-----  168 (221)
T ss_pred             EEEEecCCchHHHHHHHHH---------hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH-----
Confidence            4455555544444433322         56778888888888 6655  33343 36788999999888888753     


Q ss_pred             CCCcccccCCcccccccccccccccccccc
Q 017525          274 GEVPAEVMANLIPFARLERLILEELKNLKT  303 (370)
Q Consensus       274 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~  303 (370)
                             ...+..+++|+.|.|.+.+.+..
T Consensus       169 -------L~~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  169 -------LACLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             -------HHHHHHhhhhHHHHhcCchhhhc
Confidence                   14677888888888888766544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.24  E-value=0.0031  Score=53.52  Aligned_cols=89  Identities=26%  Similarity=0.274  Sum_probs=63.5

Q ss_pred             ccccccCCCCCCCCCEEecCCC--cCC-CCChHHHhcCCCCcEEEccCCC-cchhhh---hccccCCEEeccCCcccccC
Q 017525            4 HIENLVESPVCPRLRTLFLSSN--IFH-RVNSDFFQSMASLRVLKWSYSN-PLLFEI---SKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         4 ~l~~l~~~~~l~~L~~L~l~~~--~i~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +++.+...+.+++|+.|.++.|  .+. .++.- ...+++|++|++++|+ ..+.++   ..+.+|..|++..|..+.+-
T Consensus        54 gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen   54 GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD  132 (260)
T ss_pred             ceeecccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence            4555666688999999999999  444 33333 4667999999999999 544444   45677889999999776543


Q ss_pred             c----ccccCCcccEEeccCc
Q 017525           77 I----EFKCLVNLKCLNLEYT   93 (370)
Q Consensus        77 ~----~~~~l~~L~~L~l~~~   93 (370)
                      .    .+.-+++|++|+-.+.
T Consensus       133 dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  133 DYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cHHHHHHHHhhhhcccccccc
Confidence            2    3456777777776654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.09  E-value=0.0025  Score=32.28  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=13.0

Q ss_pred             cCCEEeccCCcccccCcccc
Q 017525           61 SLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus        61 ~L~~L~l~~~~l~~lp~~~~   80 (370)
                      +|++|++++|+++.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            46677777777766666544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.0011  Score=53.98  Aligned_cols=87  Identities=15%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             cCcEEEEeccccc--ccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC
Q 017525          230 SLKNVYISRSKFR--HATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK  307 (370)
Q Consensus       230 ~L~~L~l~~~~l~--~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~  307 (370)
                      .++.++-+++.+.  ++.-+..++.++.|.+.+|..+.+--           +...-+..|+|+.|+|++|+.+++-...
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~-----------L~~l~~~~~~L~~L~lsgC~rIT~~GL~  170 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC-----------LERLGGLAPSLQDLDLSGCPRITDGGLA  170 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH-----------HHHhcccccchheeeccCCCeechhHHH
Confidence            4677777777443  45667889999999999999887763           2234457899999999999998875432


Q ss_pred             -CccCCCcceEeecCCCCCCC
Q 017525          308 -ALPFPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       308 -~~~~~~L~~L~l~~c~~L~~  327 (370)
                       ...+++|+.|.+++.+.+..
T Consensus       171 ~L~~lknLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  171 CLLKLKNLRRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHhhhhHHHHhcCchhhhc
Confidence             34699999999988876554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.34  E-value=0.01  Score=27.82  Aligned_cols=17  Identities=53%  Similarity=0.833  Sum_probs=8.2

Q ss_pred             ccCCEEeccCCcccccC
Q 017525           60 VSLQHLDLSHSRIESLP   76 (370)
Q Consensus        60 ~~L~~L~l~~~~l~~lp   76 (370)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35666677766666554

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.95  E-value=0.016  Score=29.20  Aligned_cols=18  Identities=33%  Similarity=0.303  Sum_probs=13.3

Q ss_pred             CCCEEecCCCcCCCCChH
Q 017525           16 RLRTLFLSSNIFHRVNSD   33 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~   33 (370)
                      +|+.|++++|.++.+|+.
T Consensus         1 ~L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             TESEEEETSSEESEEGTT
T ss_pred             CccEEECCCCcCEeCChh
Confidence            467788888877777765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.97  E-value=0.11  Score=27.24  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             CCCCCEEecCCCcCCCCChHHHh
Q 017525           14 CPRLRTLFLSSNIFHRVNSDFFQ   36 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~   36 (370)
                      +++|+.|++++|+++.+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46889999999999999887554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.97  E-value=0.11  Score=27.24  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             CCCCCEEecCCCcCCCCChHHHh
Q 017525           14 CPRLRTLFLSSNIFHRVNSDFFQ   36 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~   36 (370)
                      +++|+.|++++|+++.+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            46889999999999999887554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.71  E-value=0.005  Score=51.43  Aligned_cols=82  Identities=21%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             HhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525           35 FQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET  112 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  112 (370)
                      +...+...+||++.+.  .+...++-++.|..|+++.+.+..+|..++....+.+++...| ..+..|.. ++..+.++.
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-QKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-ccccCCcch
Confidence            3444555555555555  4444455555555555555555555555555555555555554 34445544 555555555


Q ss_pred             EEcccc
Q 017525          113 LRMYEC  118 (370)
Q Consensus       113 L~l~~~  118 (370)
                      ++..++
T Consensus       116 ~e~k~~  121 (326)
T KOG0473|consen  116 NEQKKT  121 (326)
T ss_pred             hhhccC
Confidence            555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.31  E-value=0.24  Score=25.93  Aligned_cols=20  Identities=40%  Similarity=0.645  Sum_probs=13.2

Q ss_pred             cccCCEEeccCCcccccCcc
Q 017525           59 VVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus        59 l~~L~~L~l~~~~l~~lp~~   78 (370)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35667777777777766654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.31  E-value=0.24  Score=25.93  Aligned_cols=20  Identities=40%  Similarity=0.645  Sum_probs=13.2

Q ss_pred             cccCCEEeccCCcccccCcc
Q 017525           59 VVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus        59 l~~L~~L~l~~~~l~~lp~~   78 (370)
                      +++|++|++++|.++.+|..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHH
Confidence            35667777777777766654

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.86  E-value=0.021  Score=47.79  Aligned_cols=91  Identities=16%  Similarity=0.036  Sum_probs=76.9

Q ss_pred             ccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccccc
Q 017525            6 ENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKC   81 (370)
Q Consensus         6 ~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~   81 (370)
                      .++|..  ..+...++||++.|.+..+... |.-+..|..++++-+.  .+|..++....++.+++..|..+..|.+++.
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k  109 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK  109 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence            445544  6788999999999987777666 6778888899999887  8899999999999999999999999999999


Q ss_pred             CCcccEEeccCccccc
Q 017525           82 LVNLKCLNLEYTYGIS   97 (370)
Q Consensus        82 l~~L~~L~l~~~~~~~   97 (370)
                      .++++.++...+.+..
T Consensus       110 ~~~~k~~e~k~~~~~~  125 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFFR  125 (326)
T ss_pred             cCCcchhhhccCcchH
Confidence            9999999998875433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.01  E-value=0.33  Score=25.45  Aligned_cols=17  Identities=24%  Similarity=0.684  Sum_probs=11.8

Q ss_pred             CCCcceEeecCCCCCCC
Q 017525          311 FPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       311 ~~~L~~L~l~~c~~L~~  327 (370)
                      +++|+.|++.+|+++++
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            36677777777777664

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.74  E-value=0.23  Score=46.97  Aligned_cols=63  Identities=16%  Similarity=0.102  Sum_probs=34.4

Q ss_pred             cCCCcEEEEecCCcccceecc-CCCccccccccccccCcEEEEecc--cccccCcccC--CCCccEEeeccCcchH
Q 017525          195 LRHLQTLQLTYNDLDEIKIDN-GGEVKRVLEISGFHSLKNVYISRS--KFRHATWLFL--APNLKRVEIDNCQDMK  265 (370)
Q Consensus       195 l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~l~~--l~~L~~L~L~~~~~~~  265 (370)
                      .+.+..++|++|.+..+..-. ..        ...|+|..|+|++|  .+....++.+  ...|++|-+.||+..+
T Consensus       217 ~p~i~sl~lsnNrL~~Ld~~ssls--------q~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~  284 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYHLDALSSLS--------QIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT  284 (585)
T ss_pred             CcceeeeecccchhhchhhhhHHH--------HhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence            456666666666665553211 00        45667777777776  4444334433  3446667777666444

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.20  E-value=0.95  Score=23.78  Aligned_cols=18  Identities=39%  Similarity=0.628  Sum_probs=14.4

Q ss_pred             ccCCEEeccCCcccccCc
Q 017525           60 VSLQHLDLSHSRIESLPI   77 (370)
Q Consensus        60 ~~L~~L~l~~~~l~~lp~   77 (370)
                      ++|++|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467888888888888876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-15
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-04

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 3e-15
 Identities = 37/243 (15%), Positives = 82/243 (33%), Gaps = 38/243 (15%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISK 58
           N + +L       +L  L L  N    +  DF      +  L +S+      P +F    
Sbjct: 583 NKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS 642

Query: 59  VVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTY----GISRIPPKVISNLKILETL 113
           V  +  +D S+++I S        + + K +N          I + P ++ +    + T+
Sbjct: 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702

Query: 114 RMYEC--AALPQARDSIL---FGDCRVLVE---------------ELLGLEHLSVFTITL 153
            +      ++P+         + +  +L                     L +LS   ++ 
Sbjct: 703 ILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSY 762

Query: 154 NNFHAFQRLLGSCMPQYVSTPSLCLSH---FNNSKSLGVF--SLASLRHLQTLQLTYNDL 208
           N F +F     +         +  + H      ++ L  +   + +   L  LQ+  ND+
Sbjct: 763 NCFSSFPTQPLNS----SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818

Query: 209 DEI 211
            ++
Sbjct: 819 RKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 51/213 (23%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----------SNPLLFEISKVVSLQ 63
                T+ LS N   +  ++ F + + +  +  S             P          L 
Sbjct: 672 GINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT 731

Query: 64  HLDLSHSRIESLPIEFKC--LVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAAL 121
            +DL  +++ SL  +F+   L  L  +++ Y    S  P     N   L+   +      
Sbjct: 732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT-QPLNSSQLKAFGIRHQRDA 789

Query: 122 PQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHF 181
              R        R     +     L                             L +   
Sbjct: 790 EGNRIL------RQWPTGITTCPSLIQ---------------------------LQIGS- 815

Query: 182 NNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID 214
           N+   +          L  L +  N    I + 
Sbjct: 816 ND---IRKVDEKLTPQLYILDIADNPNISIDVT 845

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 40/226 (17%)

Query: 15  PRLRTLFLSSNIFHRVNSDFF---QSMASLRVLKWSYSNPLLF----EISKVVSLQHLDL 67
            RL    L  +  +R          S  SL+  +       +      I ++  LQ +  
Sbjct: 396 QRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 68  SHSRIESL--------------------PIEFKCLVNLKCLNLEYTYGISRIPPKVISNL 107
           ++S                          + +  L +L  + L Y        P  + +L
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL-YNCPNMTQLPDFLYDL 514

Query: 108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF--QRLLGS 165
             L++L +           + L  D   L ++      + +F +  NN   F     L  
Sbjct: 515 PELQSLNIACN---RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571

Query: 166 CMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
                V    L   H N  + L   +  +   L  L+L YN ++EI
Sbjct: 572 M----VKLGLLDCVH-NKVRHLE--AFGTNVKLTDLKLDYNQIEEI 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 36/268 (13%), Positives = 68/268 (25%), Gaps = 57/268 (21%)

Query: 9   VESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVL-----------------------K 45
           V+     R+  L L+         D    +  L+VL                        
Sbjct: 317 VDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMS 376

Query: 46  WSYSNPLLFEISKVV-----SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTY------ 94
               + +     K+       L   DL    I   P E K +     ++L+ T       
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP-EMKPIKKDSRISLKDTQIGNLTN 435

Query: 95  GISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLN 154
            I+ I    I  L  L+ +                  D   +  E    ++   +     
Sbjct: 436 RITFISKA-IQRLTKLQIIYFANSP---------FTYDNIAVDWEDANSDYAKQYENEEL 485

Query: 155 NFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID 214
           ++   + L             + L +  N   L    L  L  LQ+L +  N        
Sbjct: 486 SWSNLKDLT-----------DVELYNCPNMTQLPD-FLYDLPELQSLNIACNRGISAAQL 533

Query: 215 NGGEVKRVLEISGFHSLKNVYISRSKFR 242
                +   +      ++  Y+  +   
Sbjct: 534 KADWTRLADDEDTGPKIQIFYMGYNNLE 561

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 15/126 (11%)

Query: 3   NHIENLVESPVC---PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY-----SNPLL- 53
           N + +L +       P L  + +S N F    +      + L+     +      N +L 
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILR 796

Query: 54  ---FEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
                I+   SL  L +  + I  +  +      L  L++     IS     V   ++  
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAG 854

Query: 111 ETLRMY 116
             + +Y
Sbjct: 855 MYVLLY 860

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.9 bits (179), Expect = 2e-14
 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 32/206 (15%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV--------VSLQHLD 66
              R L L  N    +  + F+ +  L +L+ S ++     I  +         +L  L+
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-----IRTIEIGAFNGLANLNTLE 118

Query: 67  LSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           L  +R+ ++P   F  L  LK L L     I  IP    + +  L  L + E   L    
Sbjct: 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS 177

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
           +    G        L  L +L++    L        L        +    L LS  N+  
Sbjct: 178 EGAFEG--------LSNLRYLNLAMCNLREIPNLTPL--------IKLDELDLSG-NHLS 220

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEI 211
           ++   S   L HLQ L +  + +  I
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVI 246

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 50/203 (24%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIES 74
             L TL L  N    + +  F  +                       L+ L L ++ IES
Sbjct: 112 ANLNTLELFDNRLTTIPNGAFVYL---------------------SKLKELWLRNNPIES 150

Query: 75  LPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDC 133
           +P   F  + +L+ L+L     +S I       L  L  L +  C        ++     
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--------NLRE--- 199

Query: 134 RVLVEELLGLEHLSVFTITLNNF-----HAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
              +  L  L  L    ++ N+       +FQ L        +    L +   +  + + 
Sbjct: 200 ---IPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--------MHLQKLWMIQ-SQIQVIE 247

Query: 189 VFSLASLRHLQTLQLTYNDLDEI 211
             +  +L+ L  + L +N+L  +
Sbjct: 248 RNAFDNLQSLVEINLAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 14  CPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKWSYSNPLLF--EISKVVSLQHLDLSHS 70
            P LR L L        ++   F+ +++LR L  +    L     ++ ++ L  LDLS +
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLDELDLSGN 217

Query: 71  RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
            + ++    F+ L++L+ L +  +  I  I      NL+ L  + +
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINL 262

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.4 bits (131), Expect = 3e-08
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 13/110 (11%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDL 67
              LR L L+      + +     +  L  L     N L       F    ++ LQ L +
Sbjct: 184 LSNLRYLNLAMCNLREIPN--LTPLIKLDEL-DLSGNHLSAIRPGSF--QGLMHLQKLWM 238

Query: 68  SHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
             S+I+ +    F  L +L  +NL +   ++ +P  + + L  LE + ++
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLH 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 6e-14
 Identities = 67/335 (20%), Positives = 120/335 (35%), Gaps = 57/335 (17%)

Query: 3   NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFE 55
           N I+ L +      P L  L L+ NI   V    F ++ +LR L    +        +F 
Sbjct: 42  NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF- 100

Query: 56  ISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114
            + + +L  LD+S ++I  L    F+ L NLK L +     +  I  +  S L  LE L 
Sbjct: 101 -TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLT 158

Query: 115 MYECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172
           + +C   ++P             L+   L L HL++  I   +F    RL          
Sbjct: 159 LEKCNLTSIPTE----ALSHLHGLIV--LRLRHLNINAIRDYSFKRLYRLK--------- 203

Query: 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK 232
              L +SH+    ++    L  L +L +L +T+ +L  +             +     L+
Sbjct: 204 --VLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA---------VRHLVYLR 251

Query: 233 NVYISRSKFRH-ATWLFLA-PNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARL 290
            + +S +        +      L+ +++   Q             V       L     L
Sbjct: 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ----------LAVVEPYAFRGL---NYL 298

Query: 291 ERLILEELKNLKTVHSKAL-PFPHLKEMSVDRCPL 324
             L +   + L T+         +L+ + +D  PL
Sbjct: 299 RVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 65/326 (19%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV--------VSLQHLD 66
              R L L  N    +N D F S   L  L+ + +      +S V         +L+ L 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFNLRTLG 86

Query: 67  LSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           L  +R++ +P+  F  L NL  L++     I  +   +  +L  L++L + +   L    
Sbjct: 87  LRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYIS 144

Query: 126 DSILFGDCRVLVEELLGLEHLSVF--TITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNN 183
                G        L  LE L++    +T     A   L             L L H  N
Sbjct: 145 HRAFSG--------LNSLEQLTLEKCNLTSIPTEALSHL--------HGLIVLRLRH-LN 187

Query: 184 SKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFH--SLKNVYISRSKF 241
             ++  +S   L  L+ L++++                 +  +  +  +L ++ I+    
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPY-----------LDTMTPNCLYGLNLTSLSITHCNL 236

Query: 242 RHATWLFLA--PNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK 299
               +L +     L+ + +                 +   ++  L+   RL+ + L   +
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSYNP----------ISTIEGSMLHELL---RLQEIQLVGGQ 283

Query: 300 NLKTVHSKALP-FPHLKEMSVDRCPL 324
            L  V   A     +L+ ++V    L
Sbjct: 284 -LAVVEPYAFRGLNYLRVLNVSGNQL 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 71.6 bits (176), Expect = 7e-14
 Identities = 40/267 (14%), Positives = 87/267 (32%), Gaps = 26/267 (9%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISKVVSLQHLDLSH 69
              L  L         + S     + +L+ L  ++    S  L    S + +L H+DLS+
Sbjct: 103 LTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162

Query: 70  SRIESLPIE-FKCLVNLKCLNLE---YTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           + I+++ +   + L     +NL        I  I  +    +K L  L +          
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIM 221

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
            + L     + V  L+  E      + +      + L        V+     L++  N  
Sbjct: 222 KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL------CDVTIDEFRLTY-TNDF 274

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEIS----------GFHSLKNVY 235
           S  +     L ++  + L    +  ++        + L I               LK++ 
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLT 334

Query: 236 ISRSKFRHATWLFLAPNLKRVEIDNCQ 262
           ++ +K   +      P+L  +++    
Sbjct: 335 LTMNKGSISFKKVALPSLSYLDLSRNA 361

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 39/247 (15%), Positives = 74/247 (29%), Gaps = 58/247 (23%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEIS 57
             ++        P L++L L+ N           ++ SL  L  S +         +   
Sbjct: 317 CQLKQFPTLD-LPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMY 116
              SL+HLDLS +    +   F  L  L+ L+ +++  + R+       +L+ L  L + 
Sbjct: 374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDIS 432

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
                    D I  G        L  L  L                              
Sbjct: 433 YT-NTKIDFDGIFLG--------LTSLNTLK----------------------------- 454

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI 236
            ++  +   +      A+  +L  L L+   L++I                 H L+ + +
Sbjct: 455 -MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---------VFDTLHRLQLLNM 504

Query: 237 SRSKFRH 243
           S +    
Sbjct: 505 SHNNLLF 511

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 39/214 (18%), Positives = 69/214 (32%), Gaps = 28/214 (13%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE---ISKVVSLQHLDLSHSRIE 73
            + + LS N    + S  F + + L+ L  S       E      +  L +L L+ + I+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 74  SLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD 132
           S     F  L +L+ L    T  ++ +    I  L  L+ L +     +   +    F +
Sbjct: 94  SFSPGSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSN 151

Query: 133 CRVLVE--------------ELLGLEHLSVFTITL----NNFHAFQRLLGSCMPQYVSTP 174
              LV               +L  L       ++L    N     Q      +       
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI----KLH 207

Query: 175 SLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDL 208
            L L    NS ++    L +L  L   +L   + 
Sbjct: 208 ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 42/283 (14%), Positives = 94/283 (33%), Gaps = 29/283 (10%)

Query: 3   NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF----EI 56
           N ++ L          L+ L LS      +    +  +  L  L  +  NP+        
Sbjct: 42  NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG-NPIQSFSPGSF 100

Query: 57  SKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLR 114
           S + SL++L    +++ SL       L+ LK LN+ + + I     P   SNL  L  + 
Sbjct: 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVD 159

Query: 115 MYEC-------------AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR 161
           +                   PQ   S+      +   +    + + +  +TL        
Sbjct: 160 LSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 162 LLGSCMPQYVSTPSLCLSH--FNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEV 219
           ++ +C+          L    F + ++L +F  + +  L  + +    L           
Sbjct: 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND----FS 275

Query: 220 KRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
             +++     ++  + ++    ++   +      + + I  CQ
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ 318

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 29/158 (18%)

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC- 118
           S +++DLS + ++ L    F     L+ L+L     I  I  K    L  L  L +    
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91

Query: 119 -AALPQARDSILFGDCRVLVEELLGLEH---LSVFTITLNNFHAFQRL-LGSCMPQYVST 173
             +         F     L    L        S+ +  +      ++L +          
Sbjct: 92  IQSFS----PGSFSGLTSLEN--LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
           P+                 ++L +L  + L+YN +  I
Sbjct: 146 PA---------------YFSNLTNLVHVDLSYNYIQTI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 27/180 (15%)

Query: 64  HLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQ 123
                  ++  +P +     + K ++L +   +  +     SN   L+ L +  C     
Sbjct: 15  TYQCMDQKLSKVPDDI--PSSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC----- 66

Query: 124 ARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNN 183
               I      +  +   GL HLS   +T N   +F     S +       +L       
Sbjct: 67  ---EIE----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE---NLVAVE-TK 115

Query: 184 SKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH 243
             SL  F +  L  L+ L + +N +   K+            S   +L +V +S +  + 
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPA--------YFSNLTNLVHVDLSYNYIQT 167

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.4 bits (170), Expect = 3e-13
 Identities = 41/206 (19%), Positives = 73/206 (35%), Gaps = 32/206 (15%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV--------VSLQHLD 66
              R L L  N    + +D F+ +  L VL+   ++     I ++         SL  L+
Sbjct: 75  SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-----IRQIEVGAFNGLASLNTLE 129

Query: 67  LSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           L  + +  +P   F+ L  L+ L L     I  IP    + +  L  L + E   L    
Sbjct: 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS 188

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
           +    G        L  L++L++    + +      L        V    L +S  N+  
Sbjct: 189 EGAFEG--------LFNLKYLNLGMCNIKDMPNLTPL--------VGLEELEMSG-NHFP 231

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEI 211
            +   S   L  L+ L +  + +  I
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLI 257

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 14  CPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSLQHLDLSHS 70
            P L  L L        ++   F+ + +L+ L       +  +  ++ +V L+ L++S +
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEELEMSGN 228

Query: 71  RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
               +    F  L +LK L +  +  +S I       L  L  L +
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 50/203 (24%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIES 74
             L TL L  N    + S  F+ +                       L+ L L ++ IES
Sbjct: 123 ASLNTLELFDNWLTVIPSGAFEYL---------------------SKLRELWLRNNPIES 161

Query: 75  LPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDC 133
           +P   F  + +L  L+L     +  I       L  L+ L +  C        +I     
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--------NI----- 208

Query: 134 RVLVEELLGLEHLSVFTITLNNF-----HAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
              +  L  L  L    ++ N+F      +F  L         S   L + + +    + 
Sbjct: 209 -KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--------SSLKKLWVMN-SQVSLIE 258

Query: 189 VFSLASLRHLQTLQLTYNDLDEI 211
             +   L  L  L L +N+L  +
Sbjct: 259 RNAFDGLASLVELNLAHNNLSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 23/115 (20%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
            +I+++        L  L +S N F  +    F  +                      SL
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL---------------------SSL 244

Query: 63  QHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           + L + +S++  +    F  L +L  LNL +   +S +P  + + L+ L  L ++
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLH 298

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 35/238 (14%), Positives = 83/238 (34%), Gaps = 26/238 (10%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISKVVSLQHLDLSH 69
              L+ L         + +     + +L+ L  ++    S  L    S + +L+HLDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 70  SRIESL-PIEFKCLVNLKCLNLE---YTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           ++I+S+   + + L  +  LNL        ++ I P     ++ L  L +          
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
            + + G   + V  L+  E  +   +   +  A + L        ++     L++ +   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL------CNLTIEEFRLAYLDYYL 271

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH 243
              +     L ++ +  L    ++ +            + S     +++ +   KF  
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERV-----------KDFSYNFGWQHLELVNCKFGQ 318

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 50/282 (17%), Positives = 89/282 (31%), Gaps = 26/282 (9%)

Query: 3   NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV- 59
           N + +L        P L+ L LS      +    +QS++ L  L  +  NP+        
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAF 96

Query: 60  ---VSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
               SLQ L    + + SL       L  LK LN+ +    S   P+  SNL  LE L +
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 116 YE-------------CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITL--NNFHAFQ 160
                             +P    S+      +   +    + + +  +TL  N      
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVK 220
                     +    L L  F N  +L  F  ++L  L  L +    L  +       + 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 221 RVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
                +   ++ +  +                 + +E+ NC+
Sbjct: 277 ---LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 5e-09
 Identities = 43/263 (16%), Positives = 85/263 (32%), Gaps = 32/263 (12%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
             IE + +       + L L +  F +  +   +S+  L        N          SL
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP--SL 349

Query: 63  QHLDLSH---SRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
           + LDLS    S             +LK L+L +  G+  +       L+ LE L      
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSN-FLGLEQLEHLDFQHS- 406

Query: 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLS 179
            L Q  +  +F   R L+   L + H         +       + + +        L ++
Sbjct: 407 NLKQMSEFSVFLSLRNLIY--LDISH--------THTRVAFNGIFNGLSSLE---VLKMA 453

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239
             +  ++        LR+L  L L+   L+++              +   SL+ + +S +
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---------AFNSLSSLQVLNMSHN 504

Query: 240 KFRH--ATWLFLAPNLKRVEIDN 260
            F            +L+ ++   
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 50/237 (21%), Positives = 78/237 (32%), Gaps = 45/237 (18%)

Query: 3   NHIENLVESPVCPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISK 58
           N   N       P L  L LS N   F    S       SL+ L  S++    +      
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 59  VVSLQHLDLSHSRIESLPIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           +  L+HLD  HS ++ +     F  L NL  L++ +T+        + + L  LE L+M 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA 453

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
             +   +     +F + R L    L L    +  ++   F++   L             L
Sbjct: 454 GNS-FQENFLPDIFTELRNL--TFLDLSQCQLEQLSPTAFNSLSSLQ-----------VL 499

Query: 177 CLSH----------FNNSKSLGVFSLAS--------------LRHLQTLQLTYNDLD 209
            +SH          +    SL V   +                  L  L LT ND  
Sbjct: 500 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 50/184 (27%)

Query: 61  SLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
           S ++LDLS + +  L    F     L+ L+L     I  I      +L  L TL      
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLI----- 82

Query: 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLS 179
                                  L    + ++ L  F     L             L   
Sbjct: 83  -----------------------LTGNPIQSLALGAFSGLSSLQ-----------KLVAV 108

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239
              N  SL  F +  L+ L+ L + +N +   K+            S   +L+++ +S +
Sbjct: 109 E-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--------YFSNLTNLEHLDLSSN 159

Query: 240 KFRH 243
           K + 
Sbjct: 160 KIQS 163

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 27/232 (11%)

Query: 3   NHIENLVESPV-CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV- 60
            H+  L    V    L+ L LS+N F  +      +  SL  L     N    E+     
Sbjct: 288 THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG-NTKRLELGTGCL 346

Query: 61  ----SLQHLDLSHSRIESLPI---EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
               +L+ LDLSH  IE+      + + L +L+ LNL Y      +  +       LE L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELL 405

Query: 114 RMYECAALPQARDSILFGDCRVLV--------------EELLGLEHLSVFTITLNNFHAF 159
            +     L        F +  +L               +   GL  L    +  N+F   
Sbjct: 406 DLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
                + +        L LS   +  S+   +  SL+ +  + L++N L   
Sbjct: 465 NIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 45/257 (17%), Positives = 71/257 (27%), Gaps = 33/257 (12%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV-----SLQHLDLSH 69
             L            ++   F+ +  + V   +      F IS         LQ LDL+ 
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 70  SRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL 129
           + +  LP     L  LK L L        +     SN   L  L +       +      
Sbjct: 288 THLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGC- 345

Query: 130 FGDCRVLVEELLGLEH--LSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187
             +   L    L L H  +               L            SL LS+ N   SL
Sbjct: 346 LENLENL--RELDLSHDDIETSDCCNLQLRNLSHLQ-----------SLNLSY-NEPLSL 391

Query: 188 GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWL 247
              +      L+ L L +  L      +             H LK + +S S    ++  
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQS--------PFQNLHLLKVLNLSHSLLDISSEQ 443

Query: 248 FLA--PNLKRVEIDNCQ 262
                P L+ + +    
Sbjct: 444 LFDGLPALQHLNLQGNH 460

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 28/219 (12%)

Query: 3   NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV- 59
           N +  +  +       L  L L+    + ++ D FQS   L  L  +  NPL+F      
Sbjct: 43  NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA-NPLIFMAETAL 101

Query: 60  ---VSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
               +L+HL    + I S+  I       L+ L L   + IS I        + L+ L  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDF 160

Query: 116 YECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
              A   L +          +      L L    +  I    F +               
Sbjct: 161 QNNAIHYLSKE----DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ----------- 205

Query: 174 PSLCLSHFNNSK-SLGVFSLASLRHLQTLQLTYNDLDEI 211
            SL      N          ++++ L        D ++I
Sbjct: 206 -SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 41/220 (18%), Positives = 79/220 (35%), Gaps = 32/220 (14%)

Query: 3   NHIENLVESPV----CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLF 54
           + IE      +       L++L LS N    + ++ F+    L +L  +++         
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419

Query: 55  EISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTY--GISRIPPKVISNLKILE 111
               +  L+ L+LSHS ++    + F  L  L+ LNL+  +    +      +  L  LE
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479

Query: 112 TLRMYECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ 169
            L +  C   ++ Q                   L+ ++   ++ N   +      S +  
Sbjct: 480 ILVLSFCDLSSIDQ--------------HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLD 209
                 L L+  N+   +    L  L   +T+ L  N LD
Sbjct: 526 IY----LNLAS-NHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 39/278 (14%), Positives = 86/278 (30%), Gaps = 50/278 (17%)

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
           S + L+ S + + ++    F  L+NL  L+L     I  I      +   L+TL +    
Sbjct: 34  STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN- 91

Query: 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLS 179
                   ++F    +    L G + L               +    +    +  SL L 
Sbjct: 92  -------PLIF----MAETALSGPKALKHLFFIQTG---ISSIDFIPLHNQKTLESLYLG 137

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS 239
             N+  S+ +        L+ L    N +  +  +         ++S      N+ ++ +
Sbjct: 138 S-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE---------DMSSLQQATNLSLNLN 187

Query: 240 K---FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILE 296
                      F +   + +     Q++  I                 +  + ++ L L 
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKG--------------LKNSTIQSLWLG 233

Query: 297 ELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNR 334
             +++         F  L EMS      ++ + L  + 
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMS------VESINLQKHY 265

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 30/236 (12%), Positives = 76/236 (32%), Gaps = 14/236 (5%)

Query: 14  CPRLRTLFLSSNIFHRV-NSDFFQSMASLRVLKWSYSNPL----LFEISKVVSLQHLDLS 68
              L+ L L  N +  +  +  F ++ +L+ L+             + + + SL  L++ 
Sbjct: 97  LSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK 156

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDS 127
              + +   +  K + ++  L L  +   + +       L  +  L + +   L + + S
Sbjct: 157 ALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTN-LARFQFS 214

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187
            L  D      + L      +   + N      R +       V      L+   +    
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL--SEVEFDDCTLNGLGDFNPS 272

Query: 188 GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH 243
               ++ L  ++T+ +    + +  +            S    +K + +  SK   
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLST----VYSLLEKVKRITVENSKVFL 324

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 41/278 (14%), Positives = 87/278 (31%), Gaps = 37/278 (13%)

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
           +++ LDLS ++I  +     +   NL+ L L+ +  I+ I      +L  LE L + +  
Sbjct: 27  AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH 85

Query: 120 --ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
             +L                     L  L    +  N +      + S  P   +  +L 
Sbjct: 86  LSSLSS--------------SWFGPLSSLKYLNLMGNPYQTLG--VTSLFPNLTNLQTLR 129

Query: 178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237
           + +      +     A L  L  L++    L   +            +     + ++ + 
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---------SLKSIRDIHHLTLH 180

Query: 238 RSKFRHATWLFLA--PNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLIL 295
            S+      +F     +++ +E+ +    +         EV + +       + L     
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 296 EELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCN 333
            EL  L            L E+  D C L      + +
Sbjct: 241 NELLKLLR------YILELSEVEFDDCTLNGLGDFNPS 272

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.3 bits (131), Expect = 3e-08
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 15  PRLRTLFLSSNIFHRV---NSDFFQSMASLRVLKWSY-------SNPLLFEISKVVSLQH 64
             L  L LS N+       NS    +  SL+ L  S            +     + +L  
Sbjct: 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL--LTLKNLTS 391

Query: 65  LDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
           LD+S +    +P   +    ++ LNL  T GI  +   +   L++L
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVL 436

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 41/210 (19%), Positives = 70/210 (33%), Gaps = 22/210 (10%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE-------ISKVVSLQHLD 66
             +++ + + ++    V   F Q + SL  L  S  N ++ E            SLQ L 
Sbjct: 309 LEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLV 367

Query: 67  LSHSRIESLPIE---FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AAL 121
           LS + + S+         L NL  L++        +P       + +  L +       +
Sbjct: 368 LSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPD-SCQWPEKMRFLNLSSTGIRVV 425

Query: 122 PQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL-CLS- 179
                  +     VL      L+  S+F   L   +  +  L   +P     P L  +  
Sbjct: 426 KTC----IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL-KTLPDASLFPVLLVMKI 480

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLD 209
             N  KS+       L  LQ + L  N  D
Sbjct: 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 51/260 (19%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI-----SKVVSLQHLDLS 68
              +R L +         S  +  +  ++ +    S   +F +       + SL+ LDLS
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK--VFLVPCSFSQHLKSLEFLDLS 342

Query: 69  HSRIESLPIE----FKCLVNLKCLNLEYTYGISRIP--PKVISNLKILETLRMYECAALP 122
            + +    ++         +L+ L L   + +  +    +++  LK L +L +       
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN---- 397

Query: 123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFN 182
               +        + +     E +    ++          + +C+PQ  +   L +S+ N
Sbjct: 398 ----TF-----HPMPDSCQWPEKMRFLNLSSTGIRV----VKTCIPQ--TLEVLDVSN-N 441

Query: 183 NSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFR 242
           N  S  +F    L  LQ L ++ N L  +            + S F  L  + ISR++ +
Sbjct: 442 NLDSFSLF----LPRLQELYISRNKLKTLP-----------DASLFPVLLVMKISRNQLK 486

Query: 243 H--ATWLFLAPNLKRVEIDN 260
                      +L+++ +  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHT 506

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 45/278 (16%), Positives = 82/278 (29%), Gaps = 39/278 (14%)

Query: 2   TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDF-FQSMASLRVLKWSYSNPLLFEISKVV 60
                 L +      L+ L     +      D     +      +    + L     + V
Sbjct: 229 AFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK--VETV 286

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA 119
           +++ L +    +       +  L  +K + +E +  +  +P     +LK LE L + E  
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDLSENL 345

Query: 120 -ALPQARDSILFGDCRVLVEELLGLEH--LSVFTITLNNFHAFQRL---------LGSCM 167
                 ++S   G    L  + L L    L     T       + L              
Sbjct: 346 MVEEYLKNSACKGAWPSL--QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403

Query: 168 PQYVSTPS---LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLE 224
                      L LS       + V      + L+ L ++ N+LD               
Sbjct: 404 DSCQWPEKMRFLNLSS----TGIRVVKTCIPQTLEVLDVSNNNLDSFS------------ 447

Query: 225 ISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
                 L+ +YISR+K +      L P L  ++I   Q
Sbjct: 448 -LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQ 484

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 42/243 (17%), Positives = 76/243 (31%), Gaps = 21/243 (8%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISK-----VVSLQHLDLSH 69
                L LS N    V +  F  +  L++L+   S      I K     + +L+ LDL  
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELG-SQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTY-GISRIPPKVISNLKILETLRMYECAALPQARDS 127
           S+I  L  + F+ L +L  L L +     + +      NLK L  L + +   +      
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLH 141

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC---LSHFNNS 184
             FG    L  + +      +F +  +     Q          +S  SL    L    + 
Sbjct: 142 PSFGKLNSL--KSIDFSSNQIFLVCEHELEPLQGK-------TLSFFSLAANSLYSRVSV 192

Query: 185 KSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA 244
                 +      L+ L ++ N        N        +        ++  +   F + 
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 245 TWL 247
              
Sbjct: 253 KDP 255

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 6e-12
 Identities = 58/366 (15%), Positives = 120/366 (32%), Gaps = 63/366 (17%)

Query: 2   TNHIENLVESPVC---PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-------P 51
           + +    ++       P LR L L S+  + ++ D FQ +  L  L+  +          
Sbjct: 57  SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKD 116

Query: 52  LLFEISKVVSLQHLDLSHSRIESLPIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKI 109
             F    + +L  LDLS ++I SL +   F  L +LK ++      I  +    +  L+ 
Sbjct: 117 GYF--RNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQG 173

Query: 110 LETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ 169
                    A    +R S+ +G C      +     L +  ++ N +        S    
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNM----VLEILDVSGNGWTVDITGNFSNAIS 229

Query: 170 YVSTPSLCLSH--------FNNSKSLGVFSLASLRH--LQTLQLTYNDLDEIKIDNGGEV 219
                SL L+H        F+N K     + A L    ++ L L++  +  +        
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----- 284

Query: 220 KRVLEISGFHSLKNVYISRSKFRHATWLFLA--PNLKRVEIDNCQDMKEIIDSEKFGEVP 277
                      LK + ++ +K             NL+ + +               GE+ 
Sbjct: 285 ----VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL----------LGELY 330

Query: 278 AEVMANLIPFARLERLILEELKNLKTVHSKAL-PFPHLKEMSVDRCPL--------LKKL 328
           +     L    ++  + L++   +  +  +       L+ + +    L        +  +
Sbjct: 331 SSNFYGLP---KVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDI 386

Query: 329 PLDCNR 334
            L  N+
Sbjct: 387 FLSGNK 392

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.6 bits (147), Expect = 4e-10
 Identities = 48/277 (17%), Positives = 91/277 (32%), Gaps = 62/277 (22%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIES 74
             L+ L L+ N  +++  + F  +                      +LQ L+LS++ +  
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGL---------------------DNLQVLNLSYNLLGE 328

Query: 75  LPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA-----ALPQARDSI 128
           L    F  L  +  ++L+  + I+ I  +    L+ L+TL + + A      +P   D  
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 129 LFG-DCRVLVEELLGLEHLSVFTITLNN---FHAFQRL-------LGSCMPQYVSTPSLC 177
           L G     L +  L    + +    L N    +   R+       L        S     
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 178 ----------LSH----FNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVL 223
                     L            L       L HLQ L L +N L+ +            
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPG--------- 498

Query: 224 EISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDN 260
             S   +L+ + ++ ++    +   L  NL+ ++I  
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 6/118 (5%)

Query: 7   NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLD 66
            L      P +  +FLS N    +      +           +  +L+ + +V  LQ L 
Sbjct: 373 ALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432

Query: 67  LSHSRIESLPIEFKC--LVNLKCLNLEYTY----GISRIPPKVISNLKILETLRMYEC 118
           L+ +R  S   +       +L+ L L          + +   V   L  L+ L +   
Sbjct: 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 64.3 bits (157), Expect = 8e-12
 Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%)

Query: 3   NHIENLVESPV---CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI--- 56
           ++++ + E  V      L  L +S        +  F  ++SL VLK +  N         
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPD 169

Query: 57  --SKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
             +++ +L  LDLS  ++E L    F  L +L+ LN+ +      +       L  L+ L
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVL 228

Query: 114 RM 115
             
Sbjct: 229 DY 230

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 5e-11
 Identities = 42/212 (19%), Positives = 71/212 (33%), Gaps = 40/212 (18%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
                L L SN    +    F  +  L  L    SN L              SL++LDLS
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKL-SLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 69  HSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPK-VISNLKILETLRMYEC--AALPQAR 125
            + + ++   F  L  L+ L+ +++  + ++    V  +L+ L  L +            
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNF------HAFQRLLGSCMPQYVSTPSLCLS 179
                           GL  L V  +  N+F        F  L         +   L LS
Sbjct: 146 --------------FNGLSSLEVLKMAGNSFQENFLPDIFTEL--------RNLTFLDLS 183

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
                + L   +  SL  LQ L +++N+   +
Sbjct: 184 Q-CQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 39/212 (18%), Positives = 74/212 (34%), Gaps = 31/212 (14%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDL 67
           C  L+ L L+SN  + +  D F S+ SL  L     N L       F+   + SL  L+L
Sbjct: 75  CVNLQALVLTSNGINTIEEDSFSSLGSLEHL-DLSYNYLSNLSSSWFK--PLSSLTFLNL 131

Query: 68  SHSRIESLP--IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQ 123
             +  ++L     F  L  L+ L +      ++I  K  + L  LE L +      +   
Sbjct: 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191

Query: 124 ARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ----YVSTPSLCLS 179
                         + L  ++++S   + +        +            +    L   
Sbjct: 192 --------------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
           HF+   +    SL      + +++T   L ++
Sbjct: 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQV 269

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 6e-10
 Identities = 37/202 (18%), Positives = 67/202 (33%), Gaps = 18/202 (8%)

Query: 15  PRLRTLFLSSNIFHRVN-SDFFQSMASLRVLKWSYSNPLLFEIS-----KVVSLQHLDLS 68
             L  L L  N +  +  +  F  +  L++L+         +I       +  L+ L++ 
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGN-MDTFTKIQRKDFAGLTFLEELEID 182

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDS 127
            S ++S   +  K + N+  L L        +    +     +E L + +   L     S
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRD-TDLDTFHFS 240

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187
            L          L+         IT  +     +LL + +   +    L  S  N  KS+
Sbjct: 241 ELS---TGETNSLIKKFTFRNVKITDESLFQVMKLL-NQISGLLE---LEFSR-NQLKSV 292

Query: 188 GVFSLASLRHLQTLQLTYNDLD 209
                  L  LQ + L  N  D
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 8e-07
 Identities = 13/115 (11%), Positives = 33/115 (28%), Gaps = 14/115 (12%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL-------LFEIS-----KVVS 61
              +  L L       +   F    +S+  L       L       L         K  +
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECL-ELRDTDLDTFHFSELSTGETNSLIKKFT 255

Query: 62  LQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
            +++ ++   +  +      +  L  L       +  +P  +   L  L+ + ++
Sbjct: 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLH 309

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 40/257 (15%), Positives = 91/257 (35%), Gaps = 27/257 (10%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISKVVSLQHLDLSH 69
              L+ L         + +     + +L+ L  ++    S  L    S + +L+HLDLS 
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

Query: 70  SRIESLPIE-FKCLVNLKCLNLE---YTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
           ++I+S+     + L  +  LNL        ++ I P     ++ L  L +          
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVM 217

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
            + + G   + V  L+  E  +   +   +  A + L        ++     L++ +   
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL------CNLTIEEFRLAYLDYYL 271

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT 245
              +     L ++ +  L    ++ +            + S     +++ +   KF    
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERV-----------KDFSYNFGWQHLELVNCKFGQFP 320

Query: 246 WLFLAPNLKRVEIDNCQ 262
            L L  +LKR+   + +
Sbjct: 321 TLKL-KSLKRLTFTSNK 336

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 49/234 (20%), Positives = 80/234 (34%), Gaps = 25/234 (10%)

Query: 3   NHIENLVESPVC--PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV- 59
           N + +L        P L+ L LS      +    +QS++ L  L  +  NP+        
Sbjct: 38  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAF 96

Query: 60  ---VSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLR 114
               SLQ L    + + SL       L  LK LN+ +   I     P+  SNL  LE L 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD 155

Query: 115 MYEC-------------AALPQARDSILFGDCRVLVEELLGLEHLSVFTITL-NNFHAFQ 160
           +                  +P    S+      +   +    + + +  +TL NNF +  
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 161 RLLGSCMP-QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI 213
            +         +    L L  F N  +L  F  ++L  L  L +    L  +  
Sbjct: 216 VMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 47/213 (22%), Positives = 76/213 (35%), Gaps = 22/213 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVN--SDFFQSMASLRVLKWSYSNPLLF--EISK 58
           N   N       P L  L LS N        S       SL+ L  S++  +        
Sbjct: 335 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394

Query: 59  VVSLQHLDLSHSRIESLP--IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           +  L+HLD  HS ++ +     F  L NL  L++ +T+        + + L  LE L+M 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMA 453

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
             +   +     +F + R L    L L    +  ++   F++   L             L
Sbjct: 454 GNS-FQENFLPDIFTELRNL--TFLDLSQCQLEQLSPTAFNSLSSLQ-----------VL 499

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLD 209
            ++  N  KS+       L  LQ + L  N  D
Sbjct: 500 NMAS-NQLKSVPDGIFDRLTSLQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 42/211 (19%), Positives = 70/211 (33%), Gaps = 40/211 (18%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY-----SNPLLFEISKVVSLQHLDLSH 69
             L+ L  +SN      S     + SL  L  S                  SL++LDLS 
Sbjct: 325 KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382

Query: 70  SRIESLPIEFKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYEC--AALPQARD 126
           + + ++   F  L  L+ L+ +++  + ++    V  +L+ L  L +            +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF---N 438

Query: 127 SILFGDCRVLVEELLGLEHLSV------FTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
            I  G        L  LE L +           + F   + L             L LS 
Sbjct: 439 GIFNG--------LSSLEVLKMAGNSFQENFLPDIFTELRNLT-----------FLDLSQ 479

Query: 181 FNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
               + L   +  SL  LQ L +  N L  +
Sbjct: 480 -CQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 23/155 (14%)

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC- 118
           S ++LDLS + +  L    F     L+ L+L     I  I      +L  L TL +    
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 119 -AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
             +L        F     L +  L     ++ ++        + L             L 
Sbjct: 88  IQSLALG----AFSGLSSLQK--LVAVETNLASLENFPIGHLKTLK-----------ELN 130

Query: 178 LSHFNNSKSLGV-FSLASLRHLQTLQLTYNDLDEI 211
           ++H N  +S  +    ++L +L+ L L+ N +  I
Sbjct: 131 VAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 47/264 (17%), Positives = 85/264 (32%), Gaps = 55/264 (20%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
             L TL L +N   +++   F  +  L  L  S  N L      + +     +LQ L + 
Sbjct: 76  KNLHTLILINNKISKISPGAFAPLVKLERLYLS-KNQLKELPEKMPK-----TLQELRVH 129

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEY-TYGISRIPPKVISNLKILETLRMYEC--AALPQA 124
            + I  +    F  L  +  + L       S I       +K L  +R+ +     +PQ 
Sbjct: 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189

Query: 125 RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNS 184
               L      L      L+   +  +   +      L             L LS  N+ 
Sbjct: 190 ----LPPSLTELH-----LDGNKITKVDAASLKGLNNLA-----------KLGLSF-NSI 228

Query: 185 KSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY--------I 236
            ++   SLA+  HL+ L L  N L ++             ++    ++ VY        I
Sbjct: 229 SAVDNGSLANTPHLRELHLNNNKLVKVPGG----------LADHKYIQVVYLHNNNISAI 278

Query: 237 SRSKFRHATWLFLAPNLKRVEIDN 260
             + F    +     +   V + +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFE---ISKV 59
            +I   +   + P L  L L  N   +V++   + + +L  L  S+++    +   ++  
Sbjct: 181 TNITT-IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT 239

Query: 60  VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRI------PPKVISNLKILETL 113
             L+ L L+++++  +P        ++ + L     IS I      PP   +       +
Sbjct: 240 PHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGV 298

Query: 114 RM 115
            +
Sbjct: 299 SL 300

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 35/204 (17%), Positives = 71/204 (34%), Gaps = 31/204 (15%)

Query: 15  PRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSNPLLFEISKV-----VSLQHLDL 67
            ++  + L +N      + +  FQ M  L  ++ + +N     I+ +      SL  L L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-----ITTIPQGLPPSLTELHL 199

Query: 68  SHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQA 124
             ++I  +     K L NL  L L +   IS +    ++N   L  L +       +P  
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 125 RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNS 184
                  D + +  +++ L + ++  I  N+F             Y     + L   N  
Sbjct: 259 -----LADHKYI--QVVYLHNNNISAIGSNDFCPPGYNTK--KASYSG---VSLFS-NPV 305

Query: 185 KSLGV--FSLASLRHLQTLQLTYN 206
           +   +   +   +     +QL   
Sbjct: 306 QYWEIQPSTFRCVYVRAAVQLGNY 329

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 63.5 bits (155), Expect = 4e-11
 Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 20/257 (7%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY---SNPLLFEISKVVSLQHLDLSHS 70
           C  L  L L SN   ++ ++ F    +L  L  S+   S+  L    ++ +LQ L LS++
Sbjct: 96  CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155

Query: 71  RIESLP---IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDS 127
           +I++L    ++     +LK L L     I    P     +  L  L +      P   + 
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187
           +        +  L     LS   ++  +   F  L      ++ +   L LS+ NN   +
Sbjct: 215 LCLELANTSIRNL----SLSNSQLSTTSNTTFLGL------KWTNLTMLDLSY-NNLNVV 263

Query: 188 GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFR--HAT 245
           G  S A L  L+   L YN++  +   +   +  V  ++   S     IS +        
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 246 WLFLAPNLKRVEIDNCQ 262
                  L+ + +++  
Sbjct: 324 SFQWLKCLEHLNMEDND 340

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 62/321 (19%), Positives = 111/321 (34%), Gaps = 47/321 (14%)

Query: 3   NHIENLVESPV--CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV- 59
           N +  L  +      +L +L +  N   ++  +  Q +  L+VL   + N L     K  
Sbjct: 35  NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTF 93

Query: 60  ---VSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
               +L  L L  + I+ +    F    NL  L+L +  G+S         L+ L+ L +
Sbjct: 94  AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLL 152

Query: 116 YEC--AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL----LGSCMPQ 169
                 AL    + +       L +  L L    +   +   FHA  RL    L +    
Sbjct: 153 SNNKIQALK--SEELDIFANSSLKK--LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG 208

Query: 170 YVSTPSLCLSHFNNS-KSL------------GVFSLASLRHLQTLQLTYNDLDEIKIDNG 216
              T  LCL   N S ++L              F      +L  L L+YN+L+ +  D  
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-- 266

Query: 217 GEVKRVLEISGFHSLKNVYISRSKFRH--ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFG 274
                    +    L+  ++  +  +H  +  L    N++ + +      K+ I      
Sbjct: 267 -------SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-TKQSISLASLP 318

Query: 275 EVPAEVMANLIPFARLERLIL 295
           ++       L     LE L +
Sbjct: 319 KIDDFSFQWL---KCLEHLNM 336

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 47/232 (20%), Positives = 82/232 (35%), Gaps = 26/232 (11%)

Query: 14  CPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSNPLLF----EISKVVSLQHLDLS 68
              L  L L  N I   +    ++ + ++  +  SY N  L       + V SLQ L L 
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY-NKYLQLTRNSFALVPSLQRLMLR 462

Query: 69  H---SRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQAR 125
                 ++S P  F+ L NL  L+L     I+ I   ++  L+ LE L +          
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN----NLA 517

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
                 +    +  L GL HL +  +  N F      +   + +      + L   NN  
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI---IDLGL-NNLN 573

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237
           +L      +   L++L L  N +  ++    G          F +L  + + 
Sbjct: 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFG--------PAFRNLTELDMR 617

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 53/326 (16%), Positives = 101/326 (30%), Gaps = 54/326 (16%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
            P+L   FL  N    + S     + ++R L                S     +S + + 
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR------------SFTKQSISLASLP 318

Query: 74  SL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD 132
            +    F+ L  L+ LN+E    I  I   + + L  L+ L +       +   +  F  
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVS 377

Query: 133 CRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192
                  +L L    +  I  + F     L             L L      + L     
Sbjct: 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLE-----------VLDLGLNEIGQELTGQEW 426

Query: 193 ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH----ATWLF 248
             L ++  + L+YN   ++  +           +   SL+ + + R   ++     +   
Sbjct: 427 RGLENIFEIYLSYNKYLQLTRN---------SFALVPSLQRLMLRRVALKNVDSSPSPFQ 477

Query: 249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA 308
              NL  +++ N               +  +++  L    +LE L L+   NL  +   A
Sbjct: 478 PLRNLTILDLSNNN----------IANINDDMLEGL---EKLEILDLQH-NNLARLWKHA 523

Query: 309 LPFPHLKEMSVDRCPLLKKLPLDCNR 334
              P      +     L  L L+ N 
Sbjct: 524 --NPGGPIYFLKGLSHLHILNLESNG 547

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 45/288 (15%), Positives = 90/288 (31%), Gaps = 58/288 (20%)

Query: 2   TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVS 61
            +  E L        +R L LS++     ++  F  +                   K  +
Sbjct: 209 PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL-------------------KWTN 249

Query: 62  LQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
           L  LDLS++ +  +    F  L  L+   LEY   I  +    +  L  +  L +     
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF-----HAFQRL-------LGSCMP 168
                 + L     +       L+ L    +  N+      + F  L       L +   
Sbjct: 309 KQSISLASLPK---IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 169 QYVSTPSLCLSHFNNSK------------SLGVFSLASLRHLQTLQLTYNDLDEIKIDNG 216
              +  +       +S              +   + + L HL+ L L  N++ +  +   
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE-LTGQ 424

Query: 217 GEVKRVLEISGFHSLKNVYISRSKFR--HATWLFLAPNLKRVEIDNCQ 262
                  E  G  ++  +Y+S +K+         L P+L+R+ +    
Sbjct: 425 -------EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 46/258 (17%), Positives = 84/258 (32%), Gaps = 57/258 (22%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV-----SLQHLDLSH 69
             L  L L+ N   ++ SD F  +  L VL     N +  E++        ++  + LS+
Sbjct: 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSY 439

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTYGISRIP--PKVISNLKILETLRMYEC--AALPQA 124
           ++   L    F  + +L+ L L     +  +   P     L+ L  L +     A +   
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNNIANIND- 497

Query: 125 RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNS 184
                        + L GLE L +  +  NN     +                    + +
Sbjct: 498 -------------DMLEGLEKLEILDLQHNNLARLWK--------------------HAN 524

Query: 185 KSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH- 243
               ++ L  L HL  L L  N  DEI ++                LK + +  +     
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVE---------VFKDLFELKIIDLGLNNLNTL 575

Query: 244 -ATWLFLAPNLKRVEIDN 260
            A+      +LK + +  
Sbjct: 576 PASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 47/207 (22%), Positives = 84/207 (40%), Gaps = 31/207 (14%)

Query: 61  SLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC- 118
           ++  L+L+H+++  L    F     L  L++ +   IS++ P++   L +L+ L +    
Sbjct: 26  NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNE 84

Query: 119 -AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
            + L        F  C  L E  L L   S+  I  N F   + L+           +L 
Sbjct: 85  LSQLSDK----TFAFCTNLTE--LHLMSNSIQKIKNNPFVKQKNLI-----------TLD 127

Query: 178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237
           LSH N   S  + +   L +LQ L L+ N +  +K          L+I    SLK + +S
Sbjct: 128 LSH-NGLSSTKLGTQVQLENLQELLLSNNKIQALK-------SEELDIFANSSLKKLELS 179

Query: 238 RSKFR--HATWLFLAPNLKRVEIDNCQ 262
            ++ +            L  + ++N Q
Sbjct: 180 SNQIKEFSPGCFHAIGRLFGLFLNNVQ 206

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 33/186 (17%), Positives = 62/186 (33%), Gaps = 32/186 (17%)

Query: 60  VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC- 118
           VS +  D SH ++  +P +     N+  LNL +   + R+P    +    L +L +    
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT 60

Query: 119 -AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC 177
            + L                E    L  L V  +  N          +          L 
Sbjct: 61  ISKLEP--------------ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT---ELH 103

Query: 178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS 237
           L   N+ + +        ++L TL L++N L   K+                +L+ + +S
Sbjct: 104 LMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---------TQVQLENLQELLLS 153

Query: 238 RSKFRH 243
            +K + 
Sbjct: 154 NNKIQA 159

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 7/85 (8%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV----VSLQHLDLSH 69
              L  L L SN F  +  + F+ +  L+++     N L    + V    VSL+ L+L  
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK 593

Query: 70  SRIESLPIEF--KCLVNLKCLNLEY 92
           + I S+  +       NL  L++ +
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRF 618

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 58/258 (22%), Positives = 113/258 (43%), Gaps = 40/258 (15%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLL-FEISKVVSLQHLDLSHSRIE 73
           P+L TL +S+N   R+  D FQ+  SL+ L+ S  N L   ++S + SL H ++S++ + 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDLSLIPSLFHANVSYNLLS 199

Query: 74  SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDC 133
           +L I     + ++ L+  +   I+ +   V   L     L++          D+    + 
Sbjct: 200 TLAI----PIAVEELDASHNS-INVVRGPVNVELT---ILKLQHN----NLTDTAWLLNY 247

Query: 134 RVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLA 193
             LVE  + L +  +  I  + F   QRL             L +S+ N   +L ++   
Sbjct: 248 PGLVE--VDLSYNELEKIMYHPFVKMQRLE-----------RLYISN-NRLVALNLY-GQ 292

Query: 194 SLRHLQTLQLTYNDLDEIKIDNGGEVK-----------RVLEISGFHSLKNVYISRSKFR 242
            +  L+ L L++N L  ++ +     +             L++S  H+LKN+ +S + + 
Sbjct: 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWD 352

Query: 243 HATWLFLAPNLKRVEIDN 260
             +   L  N+ R  +D+
Sbjct: 353 CNSLRALFRNVARPAVDD 370

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 36/212 (16%), Positives = 72/212 (33%), Gaps = 32/212 (15%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSH 69
            ++  L L+      +++  F    +++ L   ++      P +F    V  L  L L  
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLER 126

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC-------AAL 121
           + + SLP   F     L  L++     + RI          L+ L++          + +
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLI 185

Query: 122 PQARDSILFGDCRVLVEELLGLEHLSVF--TITLNNFHAFQRLLGSCMPQYVSTPSLCLS 179
           P    + +  +    +   + +E L     +I +        L             L L 
Sbjct: 186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL-----------TILKLQ 234

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
           H NN          +   L  + L+YN+L++I
Sbjct: 235 H-NNLTDTAWLL--NYPGLVEVDLSYNELEKI 263

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 53/354 (14%), Positives = 103/354 (29%), Gaps = 85/354 (24%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV-----SLQHLDLSH 69
              + +   ++   ++ +    S   + +L  +     + EI         ++Q L +  
Sbjct: 45  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGF 102

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQARD 126
           + I  LP   F+ +  L  L LE    +S +P  +  N   L TL M       +     
Sbjct: 103 NAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 159

Query: 127 SILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKS 186
              F     L    L L       +T  +      L               +S+   S  
Sbjct: 160 --TFQATTSLQN--LQLSSNR---LTHVDLSLIPSLF-----------HANVSYNLLS-- 199

Query: 187 LGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW 246
               +LA    ++ L  ++N ++ +                   L  + +  +      W
Sbjct: 200 ----TLAIPIAVEELDASHNSINVV------------RGPVNVELTILKLQHNNLTDTAW 243

Query: 247 LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILE---------- 296
           L   P L  V++   +            ++       +    RLERL +           
Sbjct: 244 LLNYPGLVEVDLSYNE----------LEKIMYHPFVKM---QRLERLYISNNRLVALNLY 290

Query: 297 --ELKNLK----------TVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLER 338
              +  LK           V      F  L+ + +D    +  L L  +  L+ 
Sbjct: 291 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKN 343

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISK 58
           N++ +       P L  + LS N   ++    F  M  L  L  S     +  L      
Sbjct: 236 NNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYG--QP 293

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
           + +L+ LDLSH+ +  +         L+ L L++   I  +       LK L
Sbjct: 294 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEIS 57
           N I  +   PV   L  L L  N           +   L  +  SY+         F   
Sbjct: 215 NSINVV-RGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF--V 269

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           K+  L+ L +S++R+ +L +  + +  LK L+L + + +  +          LE L +
Sbjct: 270 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N +  L    +   +  L  S N  + V       +  L++      N L     +    
Sbjct: 196 NLLSTL---AIPIAVEELDASHNSINVVRGPVNVELTILKL----QHNNLTDTAWLLNYP 248

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
            L  +DLS++ +E +    F  +  L+ L +     +  +       +  L+ L
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-YGQPIPTLKVL 300

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 35/232 (15%), Positives = 77/232 (33%), Gaps = 36/232 (15%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY----SNPLLFEISKVVSLQHLDLSH 69
             +L +L L+ N    + ++F      +  L +++      P +F+   V  +  +D S+
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSY 411

Query: 70  SRIES--------LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA-- 119
           + I S        L       +N+  +NL     IS+ P ++ S    L ++ +      
Sbjct: 412 NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLT 470

Query: 120 ALPQARDSIL---FGDCRVLVE---------------ELLGLEHLSVFTITLNNFHAFQR 161
            +P+         F +  +L                     L +L    ++ N+F  F  
Sbjct: 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPT 530

Query: 162 LLGSC--MPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
              +   +  +              +      +     L  LQ+  ND+ ++
Sbjct: 531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 36/239 (15%), Positives = 83/239 (34%), Gaps = 35/239 (14%)

Query: 2   TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVS 61
            +  + L ++PV  +++ +++  N              +L+        P+   + K+  
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYN--------------NLKTF------PVETSLQKMKK 331

Query: 62  LQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--A 119
           L  L+  ++++E     F   + L  LNL Y   I+ IP       + +E L        
Sbjct: 332 LGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLK 390

Query: 120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLS 179
            +P   +        V+    +   +  + ++   NF              ++  S+ LS
Sbjct: 391 YIP---NIFDAKSVSVMSA--IDFSYNEIGSVDGKNFDPLDPTPFKG----INVSSINLS 441

Query: 180 HFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238
           + N          ++   L ++ L  N L EI  ++  +          + L ++ +  
Sbjct: 442 N-NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN--ENFKNTYLLTSIDLRF 497

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 14  CPRLRTLFLSSNIFHRVNSDF-FQSMASLRVLKWSYSNPL---LFEISKVVSLQHLDLSH 69
              L ++ L  N   +++ DF   ++  L  +  SY N       +     +L+   + +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRN 545

Query: 70  SRIES-------LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
            R           P       +L  L +     I ++  K+  N+ +L
Sbjct: 546 QRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEKITPNISVL 592

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 29/234 (12%), Positives = 60/234 (25%), Gaps = 42/234 (17%)

Query: 4   HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISK 58
            +                     + +   D+        ++K   ++      +      
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY------------------TYGISRIP 100
            +    +    + I  +      L  L+   +                         +  
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241

Query: 101 PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ 160
                NLK L  + +Y C  L              L   L  L  + +  +  N   + +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNL------------TKLPTFLKALPEMQLINVACNRGISGE 289

Query: 161 RLLGSC-----MPQYVSTPSLCLSHFNNSKSLGV-FSLASLRHLQTLQLTYNDL 208
           +L          P       + + + NN K+  V  SL  ++ L  L+  YN L
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLYNQL 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/264 (10%), Positives = 62/264 (23%), Gaps = 58/264 (21%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVL-------KWSYSNPLLFEISKVVSLQHLD 66
             R+  L L          D    +  L VL       K +        IS  +S +   
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 67  LSHSRIE---------------------------SLPIEFKCLVNLKCLNLEYTYGISRI 99
                 +                           S+    +  +    +       I+ +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN-NITFV 198

Query: 100 PPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF 159
               +  L  L    M     + +               E    E+   +      +   
Sbjct: 199 SKA-VMRLTKLRQFYMGNSPFVAENICEAW---------ENENSEYAQQYKTEDLKWDNL 248

Query: 160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEV 219
           + L             + + +  N   L    L +L  +Q + +  N           + 
Sbjct: 249 KDL-----------TDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISG-EQLKDDW 295

Query: 220 KRVLEISGFHSLKNVYISRSKFRH 243
           + + +      ++ +YI  +  + 
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKT 319

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 23/196 (11%), Positives = 41/196 (20%), Gaps = 22/196 (11%)

Query: 61  SLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLEY---TYGISRIPPKVISNLKILETLRMY 116
            +  L L        +P     L  L+ L L             PK IS     E  +  
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141

Query: 117 ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
                    D                   L    I  +      +       +      +
Sbjct: 142 RMHYQKTFVDYD----------PREDFSDLIKDCINSDPQQKSIKKSSRITLKDT---QI 188

Query: 177 CLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI 236
                NN   +   ++  L  L+   +  +        N  E             K   +
Sbjct: 189 GQLS-NNITFVSK-AVMRLTKLRQFYMGNSPFVAE---NICEAWENENSEYAQQYKTEDL 243

Query: 237 SRSKFRHATWLFLAPN 252
                +  T + +   
Sbjct: 244 KWDNLKDLTDVEVYNC 259

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 54/260 (20%), Positives = 89/260 (34%), Gaps = 48/260 (18%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV--SLQHLDLSHSRI 72
             L  L L +N   +++   F  +  L+ L  S ++  L EI   +  SL  L +  +RI
Sbjct: 78  QHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH--LVEIPPNLPSSLVELRIHDNRI 135

Query: 73  ESLPIE-FKCLVNLKCLNLEY-TYGISRIPPKVISNLKILETLRMYEC--AALPQARDSI 128
             +P   F  L N+ C+ +       S   P     LK L  LR+ E     +P+     
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTGIPKDLPET 194

Query: 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
           L           L L+H  +  I L +   + +L             L L H N  + + 
Sbjct: 195 L---------NELHLDHNKIQAIELEDLLRYSKLY-----------RLGLGH-NQIRMIE 233

Query: 189 VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY--------ISRSK 240
             SL+ L  L+ L L  N L  +             +     L+ VY        +  + 
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSRVPAG----------LPDLKLLQVVYLHTNNITKVGVND 283

Query: 241 FRHATWLFLAPNLKRVEIDN 260
           F    +         + + N
Sbjct: 284 FCPVGFGVKRAYYNGISLFN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 15/90 (16%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL----------LFEISKVVSLQ 63
            P LR L L +N   RV +     +  L+V+ + ++N +          +    K     
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLP-DLKLLQVV-YLHTNNITKVGVNDFCPVGFGVKRAYYN 297

Query: 64  HLDLSHSRIESLPIE---FKCLVNLKCLNL 90
            + L ++ +    ++   F+C+ +   +  
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 52/354 (14%), Positives = 105/354 (29%), Gaps = 85/354 (24%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV-----SLQHLDLSH 69
              + +   ++   ++ +    S   + +L  +     + EI         ++Q L +  
Sbjct: 51  NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGF 108

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQARD 126
           + I  LP   F+ +  L  L LE    +S +P  +  N   L TL M       +     
Sbjct: 109 NAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDD-- 165

Query: 127 SILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKS 186
              F     L  + L L    +  + L+   +                   +S+   S  
Sbjct: 166 --TFQATTSL--QNLQLSSNRLTHVDLSLIPSLFHAN--------------VSYNLLS-- 205

Query: 187 LGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW 246
               +LA    ++ L  ++N ++ +                   L  + +  +      W
Sbjct: 206 ----TLAIPIAVEELDASHNSINVV------------RGPVNVELTILKLQHNNLTDTAW 249

Query: 247 LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILE---------- 296
           L   P L  V++   +            ++       +    RLERL +           
Sbjct: 250 LLNYPGLVEVDLSYNE----------LEKIMYHPFVKM---QRLERLYISNNRLVALNLY 296

Query: 297 --ELKNLK----------TVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLER 338
              +  LK           V      F  L+ + +D    +  L L  +  L+ 
Sbjct: 297 GQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKN 349

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 57/259 (22%), Positives = 112/259 (43%), Gaps = 38/259 (14%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIES 74
           P+L TL +S+N   R+  D FQ+  SL+ L+ S +     ++S + SL H ++S++ + +
Sbjct: 147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST 206

Query: 75  LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCR 134
           L I     + ++ L+  +   I+ +   V   L IL+ L+                 +  
Sbjct: 207 LAI----PIAVEELDASHNS-INVVRGPVNVELTILK-LQHNNLTDTAW------LLNYP 254

Query: 135 VLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLAS 194
            LVE  + L +  +  I  + F   QRL             L +S+ N   +L ++    
Sbjct: 255 GLVE--VDLSYNELEKIMYHPFVKMQRLE-----------RLYISN-NRLVALNLY-GQP 299

Query: 195 LRHLQTLQLTYNDLDEIKIDNGGEVK-----------RVLEISGFHSLKNVYISRSKFRH 243
           +  L+ L L++N L  ++ +     +             L++S  H+LKN+ +S + +  
Sbjct: 300 IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC 359

Query: 244 ATWLFLAPNLKRVEIDNCQ 262
            +   L  N+ R  +D+  
Sbjct: 360 NSLRALFRNVARPAVDDAD 378

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 38/215 (17%), Positives = 78/215 (36%), Gaps = 37/215 (17%)

Query: 51  PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKI 109
              FE   + + + +   +S +  LP         ++ LNL     I  I     +    
Sbjct: 42  YFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHT 100

Query: 110 LETLRMYEC--AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM 167
           ++ L M       LP      +F +  +L   +L LE   + ++    FH   +L     
Sbjct: 101 IQKLYMGFNAIRYLPPH----VFQNVPLL--TVLVLERNDLSSLPRGIFHNTPKLT---- 150

Query: 168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISG 227
                  +L +S+ NN + +   +  +   LQ LQL+ N L  +            ++S 
Sbjct: 151 -------TLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLTHV------------DLSL 190

Query: 228 FHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
             SL +  +S +     + L +   ++ ++  +  
Sbjct: 191 IPSLFHANVSYNLL---STLAIPIAVEELDASHNS 222

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 12/118 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEIS 57
           N I  +   PV   L  L L  N           +   L  +  SY+         F   
Sbjct: 221 NSINVV-RGPVNVELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPF--V 275

Query: 58  KVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           K+  L+ L +S++R+ +L +  + +  LK L+L + + +  +          LE L +
Sbjct: 276 KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N +  L    +   +  L  S N  + V       +  L++      N L     +    
Sbjct: 202 NLLSTL---AIPIAVEELDASHNSINVVRGPVNVELTILKL----QHNNLTDTAWLLNYP 254

Query: 61  SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
            L  +DLS++ +E +    F  +  L+ L +     +  +       +  L+ L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL-YGQPIPTLKVL 306

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 30/217 (13%)

Query: 3   NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV 60
           N I ++  +    C  L  L+L SN+  R+++  F  +A L  L  S  N  L  +    
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD-NAQLRSVDPAT 100

Query: 61  -----SLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114
                 L  L L    ++ L    F+ L  L+ L L+    +  +P     +L  L  L 
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLF 159

Query: 115 MY--ECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172
           ++    +++P+      F     L    L L    V  +  + F    RL+         
Sbjct: 160 LHGNRISSVPER----AFRGLHSLDR--LLLHQNRVAHVHPHAFRDLGRLM--------- 204

Query: 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLD 209
             +L L   NN  +L   +LA LR LQ L+L  N   
Sbjct: 205 --TLYLFA-NNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 44/206 (21%), Positives = 74/206 (35%), Gaps = 30/206 (14%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSH 69
              + +FL  N    V +  F++  +L +L    +         F  + +  L+ LDLS 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF--TGLALLEQLDLSD 89

Query: 70  -SRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQAR 125
            +++ S+    F  L  L  L+L+   G+  + P +   L  L+ L + +    ALP   
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPDD- 147

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
               F D   L    L L    + ++    F     L             L L   N   
Sbjct: 148 ---TFRDLGNL--THLFLHGNRISSVPERAFRGLHSLD-----------RLLLHQ-NRVA 190

Query: 186 SLGVFSLASLRHLQTLQLTYNDLDEI 211
            +   +   L  L TL L  N+L  +
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSAL 216

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 52/358 (14%), Positives = 113/358 (31%), Gaps = 56/358 (15%)

Query: 3   NHIENLVESP--VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISK 58
           + ++  + S       ++ L LS N   ++++        L +L  S  N L    ++  
Sbjct: 20  SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLDLES 78

Query: 59  VVSLQHLDLSHSRIESLP-----------------IEFKCLVNLKCLNLEYTYGISRIPP 101
           + +L+ LDL+++ ++ L                  +        K + L     I+ +  
Sbjct: 79  LSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITMLRD 137

Query: 102 KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR 161
                   ++ L +     +     + L      L  E L L++  ++ +       F +
Sbjct: 138 LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTL--EHLNLQYNFIYDVKGQVV--FAK 192

Query: 162 LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKR 221
           L            +L LS  N    +G     S   +  + L  N L  I+         
Sbjct: 193 LK-----------TLDLSS-NKLAFMGP-EFQSAAGVTWISLRNNKLVLIE--------- 230

Query: 222 VLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEI-IDSEKFGEVPAEV 280
              +    +L++  +  + F   T        +RV+    Q +K++   +E+   VP   
Sbjct: 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289

Query: 281 MANLIPFARLERLILEELKNLKTVHSKALPFPHLK----EMSVDRCPLLKKLPLDCNR 334
                    L     + L  LK      L     +    E   +     +++     +
Sbjct: 290 HYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 7e-07
 Identities = 24/209 (11%), Positives = 56/209 (26%), Gaps = 36/209 (17%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           N I ++    V  +L+TL LSSN    +  +F                           +
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQS----------------------AAGV 216

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP 122
             + L ++++  +    +   NL+  +L              S  + ++T+       L 
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFN 182
              +             +  L H   +           RL+           +L     +
Sbjct: 277 GQNEEEC---------TVPTLGHYGAYCCEDLPAPFADRLI----ALKRKEHALLSGQGS 323

Query: 183 NSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
            ++ L      +    + +         +
Sbjct: 324 ETERLEC-ERENQARQREIDALKEQYRTV 351

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
             L +L LS N  + ++S+ F  + +LR L  S  N L      LF  S + +L+ L L 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLF--SDLQALEVLLLY 120

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR 114
           ++ I  +    F+ +  L+ L L     ISR P ++I +   L  L 
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLM 166

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.3 bits (128), Expect = 5e-08
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDL 67
            P LR L LSSN  H ++   F  + +L VL   Y+N +       F    +  LQ L L
Sbjct: 87  VPNLRYLDLSSNHLHTLDEFLFSDLQALEVL-LLYNNHIVVVDRNAF--EDMAQLQKLYL 143

Query: 68  SHSRIESLPIE-FKCLVNLKCLNLEYTYG--ISRIPPKVISNLKILETLRMY 116
           S ++I   P+E  K    L  L L       + ++P   +  L       +Y
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 36/159 (22%), Positives = 55/159 (34%), Gaps = 26/159 (16%)

Query: 60  VSLQHLDLSHSRIESLPIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
                LDLSH+ +  L  E     L NL  L L +   ++ I  +    +  L  L +  
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97

Query: 118 C--AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS 175
                L +     LF D + L  E+L L +  +  +  N F    +L             
Sbjct: 98  NHLHTLDEF----LFSDLQAL--EVLLLYNNHIVVVDRNAFEDMAQLQ-----------K 140

Query: 176 LCLSHFNNSKSL--GVFS-LASLRHLQTLQLTYNDLDEI 211
           L LS  N        +      L  L  L L+ N L ++
Sbjct: 141 LYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 5e-09
 Identities = 32/204 (15%), Positives = 59/204 (28%), Gaps = 23/204 (11%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI-----SKVVSLQHLDLSH 69
                L         +    F     L  +     N +L  I     S +  L  + +  
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKI-EISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 70  S-RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDS 127
           +  +  +  E F+ L NL+ L +  T GI  +P     +      L + +   +     +
Sbjct: 89  ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL 187
              G        +L L    +  I  + F+  Q               L LS  NN + L
Sbjct: 148 SFVGLSFES--VILWLNKNGIQEIHNSAFNGTQLD------------ELNLSDNNNLEEL 193

Query: 188 GVFSLASLRHLQTLQLTYNDLDEI 211
                        L ++   +  +
Sbjct: 194 PNDVFHGASGPVILDISRTRIHSL 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 29/198 (14%), Positives = 45/198 (22%), Gaps = 51/198 (25%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISK------VVSLQHLDLS 68
           P L+ L +S+     +            +L     N  +  I +            L L+
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLL-DIQDNINIHTIERNSFVGLSFESVILWLN 162

Query: 69  HSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSI 128
            + I+ +         L  LNL     +  +P  V         L               
Sbjct: 163 KNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL--------------- 207

Query: 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
                            +S   I     +  + L             L      N K L 
Sbjct: 208 ----------------DISRTRIHSLPSYGLENL-----------KKLRARSTYNLKKLP 240

Query: 189 VFSLASLRHLQTLQLTYN 206
                 L  L    LTY 
Sbjct: 241 TLE--KLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.4 bits (110), Expect = 7e-06
 Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 4   HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVL-----KWSYSNPLLFEISK 58
            IE      +      L+L+ N    +++  F       +              +F    
Sbjct: 143 TIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVF--HG 200

Query: 59  VVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM-- 115
                 LD+S +RI SLP    + L  L+  +    Y + ++P   +  L  L    +  
Sbjct: 201 ASGPVILDISRTRIHSLPSYGLENLKKLRARST---YNLKKLPT--LEKLVALMEASLTY 255

Query: 116 -YECAAL 121
              C A 
Sbjct: 256 PSHCCAF 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 50/307 (16%), Positives = 101/307 (32%), Gaps = 42/307 (13%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSLQHLDLSHSRI 72
             ++ L LS N   ++++        L +L  S  N L    ++  + +L+ LDL+++ +
Sbjct: 34  WNVKELDLSGNPLSQISAADLAPFTKLELLNLSS-NVLYETLDLESLSTLRTLDLNNNYV 92

Query: 73  ESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD 132
           + L +      +++ L+      ISR+        K +  L   +   L      +  G 
Sbjct: 93  QELLV----GPSIETLHAANNN-ISRVSCSRGQGKKNIY-LANNKITMLR----DLDEGC 142

Query: 133 CRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192
              +    L L+   + T+      A    L            L L + N    +     
Sbjct: 143 RSRVQY--LDLKLNEIDTVNFAELAASSDTL----------EHLNLQY-NFIYDVK--GQ 187

Query: 193 ASLRHLQTLQLTYNDLDEIKIDNGGEVK-RVL------------EISGFHSLKNVYISRS 239
                L+TL L+ N L  +  +         +             +    +L++  +  +
Sbjct: 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGN 247

Query: 240 KFRHATWLFLAPNLKRVEIDNCQDMKEI-IDSEKFGEVPAEVMANLIPFARLERLILEEL 298
            F   T        +RV+    Q +K++   +E+   VP            L     + L
Sbjct: 248 GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRL 307

Query: 299 KNLKTVH 305
             L   H
Sbjct: 308 IALGHHH 314

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 30/252 (11%), Positives = 81/252 (32%), Gaps = 63/252 (25%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF----EISKVVSLQHLDLSHS 70
            R +   ++ +   +  +   QS  +++ L  S  NPL      +++    L+ L+LS +
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSG-NPLSQISAADLAPFTKLELLNLSSN 68

Query: 71  RIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILF 130
            +     + + L  L+ L+L   Y         +  L +  ++                 
Sbjct: 69  VLYETL-DLESLSTLRTLDLNNNY---------VQELLVGPSIET--------------- 103

Query: 131 GDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVF 190
                     L   + ++  ++ +     +               + L++ N    L   
Sbjct: 104 ----------LHAANNNISRVSCSRGQGKKN--------------IYLAN-NKITMLRDL 138

Query: 191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLA 250
                  +Q L L  N++D +              +   +L+++ +  +         + 
Sbjct: 139 DEGCRSRVQYLDLKLNEIDTVNFAE--------LAASSDTLEHLNLQYNFIYDVKGQVVF 190

Query: 251 PNLKRVEIDNCQ 262
             LK +++ + +
Sbjct: 191 AKLKTLDLSSNK 202

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           N I ++    V  +L+TL LSSN    +  +F                           +
Sbjct: 179 NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF----------------------QSAAGV 216

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
             + L ++++  +    +   NL+  +L              S  + ++T+
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 47/260 (18%), Positives = 91/260 (35%), Gaps = 44/260 (16%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             + + V       +  +  +++    V     Q + ++  L +   N L  +  ++ + 
Sbjct: 31  KSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKL-FLNGNKLTDIKPLTNLK 87

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
           +L  L L  ++I+ L    K L  LK L+LE+  GIS I    + +L  LE+L +     
Sbjct: 88  NLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNN-- 141

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
             +  D          +  L  L  L   ++  N       L  + + +     +L LS 
Sbjct: 142 --KITD----------ITVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQ---NLYLSK 184

Query: 181 FNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI-------------DNGGEVKRVLEISG 227
            N+   L   +LA L++L  L+L   +     I             +  G +     IS 
Sbjct: 185 -NHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 241

Query: 228 FHSLKNVYISRSKFRHATWL 247
               +   +          +
Sbjct: 242 DGDYEKPNVKWHLPEFTNEV 261

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 44/249 (17%), Positives = 86/249 (34%), Gaps = 44/249 (17%)

Query: 17  LRTLFLSSNIFHRVNSDF-FQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIES 74
           +      S     +   F   + A          +       +++ S+  +  ++S I+S
Sbjct: 1   MGETITVST---PIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKS 57

Query: 75  LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCR 134
           +    + L N+  L L     ++ I P  ++NLK L  L                  + +
Sbjct: 58  VQ-GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWL---------------FLDENK 98

Query: 135 VL-VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLA 193
           +  +  L  L+ L   ++  N       L            SL L + N    +    L+
Sbjct: 99  IKDLSSLKDLKKLKSLSLEHNGISDINGL-----VHLPQLESLYLGN-NKITDIT--VLS 150

Query: 194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNL 253
            L  L TL L  N + +I             ++G   L+N+Y+S++       L    NL
Sbjct: 151 RLTKLDTLSLEDNQISDIV-----------PLAGLTKLQNLYLSKNHISDLRALAGLKNL 199

Query: 254 KRVEIDNCQ 262
             +E+ + +
Sbjct: 200 DVLELFSQE 208

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 46/313 (14%), Positives = 109/313 (34%), Gaps = 37/313 (11%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSH 69
            +   L +S N    + +    S++ LR+L  S++        +F+      L++LDLSH
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFK--FNQELEYLDLSH 78

Query: 70  SRIESLPIEFKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSI 128
           +++  +       VNLK L+L +      +P  K   N+  L+ L +           S 
Sbjct: 79  NKLVKIS--CHPTVNLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTT----HLEKSS 131

Query: 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL--LGSCMPQYVSTPSLCLSHFNNSKS 186
           +          +  L    V  +    +   +    L     + +         F+    
Sbjct: 132 V--------LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILD 183

Query: 187 LGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW 246
           + V ++A+L       +  ++     +    +++   ++S   +L N+  + + F     
Sbjct: 184 VSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL-TLNNIETTWNSFIRILQ 242

Query: 247 LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS 306
           L     +    I N + ++  +D   F                L+ L + ++ +      
Sbjct: 243 LVWHTTVWYFSISNVK-LQGQLDFRDFD----------YSGTSLKALSIHQVVSDVFGFP 291

Query: 307 KALPFPHLKEMSV 319
           ++  +     M++
Sbjct: 292 QSYIYEIFSNMNI 304

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 27/202 (13%), Positives = 58/202 (28%), Gaps = 13/202 (6%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLF-----EISKVVSLQHLDLS 68
              L  L LS N   +++     ++  L +      N         E   +  L+ L LS
Sbjct: 68  NQELEYLDLSHNKLVKISCHPTVNLKHLDL----SFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 69  HSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSI 128
            + +E        + +L    +    G +    +    L+   T  ++     P  ++  
Sbjct: 124 TTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH--IVFPTNKEFH 179

Query: 129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
              D  V     L L ++          +    L        +S  +L       +  + 
Sbjct: 180 FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIR 239

Query: 189 VFSLASLRHLQTLQLTYNDLDE 210
           +  L     +    ++   L  
Sbjct: 240 ILQLVWHTTVWYFSISNVKLQG 261

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 15  PRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV--VSLQHLDLSHSR 71
             L+ L +S N + +           SL  L    SN L   I +     ++ LDL  ++
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSL-NMSSNILTDTIFRCLPPRIKVLDLHSNK 432

Query: 72  IESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           I+S+P +   L  L+ LN+     +  +P  +   L  L+ + ++
Sbjct: 433 IKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 40/203 (19%), Positives = 76/203 (37%), Gaps = 29/203 (14%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE 73
           L    + S++F    S  ++  +++ +  ++ S      +   SK+    HLD S++ + 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 74  SLPIE-FKCLVNLKCLNLEYTYGISRIPP--KVISNLKILETLRMYECAALPQARDSILF 130
               E    L  L+ L L+    +  +    ++ + +K L+ L + +             
Sbjct: 338 DTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQN----SVSYDEKK 392

Query: 131 GDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL--G 188
           GDC      LL L ++S   +T   F      +     +      L L   N  KS+   
Sbjct: 393 GDCSWTKS-LLSL-NMSSNILTDTIFRCLPPRI-----KV-----LDLHS-NKIKSIPKQ 439

Query: 189 VFSLASLRHLQTLQLTYNDLDEI 211
           V  L +L   Q L +  N L  +
Sbjct: 440 VVKLEAL---QELNVASNQLKSV 459

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 29/201 (14%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV----VSLQHLDLSHSRI 72
           +     + +    V+      ++    L +S  N L   + +       L+ L L  +++
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMNQL 360

Query: 73  ESLPIE---FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL 129
           + L         + +L+ L++              S  K L +L M     L       +
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILT----DTI 415

Query: 130 FGDCRVLVEEL-LGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLG 188
           F      ++ L L    +      +    A Q L            ++     N  KS+ 
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL------------NV---ASNQLKSVP 460

Query: 189 VFSLASLRHLQTLQLTYNDLD 209
                 L  LQ + L  N  D
Sbjct: 461 DGIFDRLTSLQKIWLHTNPWD 481

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 49/271 (18%), Positives = 96/271 (35%), Gaps = 39/271 (14%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
            ++ + V      ++ TL         +  D  + + +L  + +S  N L  +  +  + 
Sbjct: 34  TNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSN-NQLTDITPLKNLT 90

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
            L  + +++++I  +      L NL  L L     I+ I P  + NL  L  L +     
Sbjct: 91  KLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQ-ITDIDP--LKNLTNLNRLELSSN-- 144

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-LGSCMPQYVSTPSLCLS 179
                D         L  + L   +       L N    +RL + S     VS  S+ L+
Sbjct: 145 --TISDISALSGLTSL--QQLSFGNQVTDLKPLANLTTLERLDISSN---KVSDISV-LA 196

Query: 180 HFNNSKSL--------GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231
              N +SL         +  L  L +L  L L  N L +I             ++   +L
Sbjct: 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-----------TLASLTNL 245

Query: 232 KNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
            ++ ++ ++  +   L     L  +++   Q
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQ 276

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 45/274 (16%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             I+++        L  +  S+N     +    +++  L  +  +  N +  +  ++ + 
Sbjct: 56  LGIKSIDGVEYLNNLTQINFSNNQLT--DITPLKNLTKLVDILMNN-NQIADITPLANLT 112

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
           +L  L L +++I  +    K L NL  L L     IS I    +S L  L+ L       
Sbjct: 113 NLTGLTLFNNQITDID-PLKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN--- 165

Query: 121 LPQARDSILFGDCRVL------------VEELLGLEHLSVFTITLNNFHAFQRLLGSCMP 168
             Q  D     +   L            +  L  L +L     T N       L    + 
Sbjct: 166 --QVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL--GILT 221

Query: 169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGF 228
                  L L+  N  K +G  +LASL +L  L L  N +  +             +SG 
Sbjct: 222 NLD---ELSLNG-NQLKDIG--TLASLTNLTDLDLANNQISNLA-----------PLSGL 264

Query: 229 HSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
             L  + +  ++  + + L     L  +E++  Q
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 37/274 (13%), Positives = 91/274 (33%), Gaps = 45/274 (16%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N I ++        L+ L   + +    +     ++ +L  L    SN +  +  ++K+ 
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERL-DISSNKVSDISVLAKLT 199

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
           +L+ L  ++++I  +      L NL  L+L     +  I    +++L  L  L +     
Sbjct: 200 NLESLIATNNQISDIT-PLGILTNLDELSLNGNQ-LKDIGT--LASLTNLTDLDLANN-- 253

Query: 121 LPQARDSILFGDCRVL------------VEELLGLEHLSVFTITLNNFHAFQRLLGSCMP 168
             Q  +         L            +  L GL  L+   +  N       +      
Sbjct: 254 --QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI------ 305

Query: 169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGF 228
              +  +L       +    +  ++SL  LQ L    N + ++             ++  
Sbjct: 306 --SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-----------SLANL 352

Query: 229 HSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
            ++  +    ++    T L     + ++ +++  
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 29/211 (13%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N I NL       +L  L L +N     N      + +L  L     N L  +  IS + 
Sbjct: 253 NQISNLAPLSGLTKLTELKLGANQIS--NISPLAGLTALTNL-ELNENQLEDISPISNLK 309

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
           +L +L L  + I  +      L  L+ L       +S +    ++NL  +  L       
Sbjct: 310 NLTYLTLYFNNISDIS-PVSSLTKLQRLFFYNNK-VSDVSS--LANLTNINWLSAGHN-- 363

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
             Q  D          +  L  L  ++   +    +        + +             
Sbjct: 364 --QISD----------LTPLANLTRITQLGLNDQAWTNAPVNYKANV------SIPNTVK 405

Query: 181 FNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
                 +   +++         +T+N     
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITWNLPSYT 436

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 34/220 (15%), Positives = 72/220 (32%), Gaps = 36/220 (16%)

Query: 53  LFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET 112
           +F  + +       L  + +    +    L  +  L  +   GI  I    +  L  L  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDT-VSQTDLDQVTTLQADRL-GIKSIDG--VEYLNNLTQ 72

Query: 113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172
           +         Q  D     +       L  L  + +    + +      L         +
Sbjct: 73  INFSNN----QLTDITPLKN-------LTKLVDILMNNNQIADITPLANL--------TN 113

Query: 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI----------KIDNGGEVKRV 222
              L L +   +    +  L +L +L  L+L+ N + +I          ++  G +V  +
Sbjct: 114 LTGLTLFNNQIT---DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL 170

Query: 223 LEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
             ++   +L+ + IS +K    + L    NL+ +   N Q
Sbjct: 171 KPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 47/223 (21%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRI 72
           P    L L S    +     F+ ++ L+ +    +    L   + +   L+ L L+ + +
Sbjct: 81  PGRVALELRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL 139

Query: 73  ESLPIEFKCLVNLKCLNLEYTYGISRIP--------PKVISNLKILETLRMYECA--ALP 122
            +LP     L  L+ L++     ++ +P              L  L++LR+      +LP
Sbjct: 140 RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP 199

Query: 123 QARDSILFGDCRVLVE----------------ELLGLEHLSVFTITLNNFHAFQRL---L 163
            +       + + L                   L  LE L      L    A +      
Sbjct: 200 AS-----IANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD-----LRGCTALRNYPPIF 249

Query: 164 GSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYN 206
           G           L L   +N  +L +  +  L  L+ L L   
Sbjct: 250 GGR----APLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 49  SNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLK 108
           +   L E +       L+L    +   P +   L +L+ + ++   G+  +P   +    
Sbjct: 70  ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPD-TMQQFA 127

Query: 109 ILETLRMYECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSC 166
            LETL +      ALP    SI           L  L  LS+              L S 
Sbjct: 128 GLETLTLARNPLRALP---ASI---------ASLNRLRELSIRAC--PELTELPEPLAST 173

Query: 167 MPQYVSTPSLCLSHFN-NSKSLGVF--SLASLRHLQTLQLTYNDLDEI 211
                    + L         +     S+A+L++L++L++  + L  +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL 221

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 49/205 (23%), Positives = 71/205 (34%), Gaps = 29/205 (14%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
           P L+ L LS      +    +QS++ L  L     NP+       F  S + SLQ L   
Sbjct: 52  PELQVLDLSRCEIQTIEDGAYQSLSHLSTL-ILTGNPIQSLALGAF--SGLSSLQKLVAV 108

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECA--ALPQA 124
            + + SL       L  LK LN+ +   I     P+  SNL  LE L +      ++   
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167

Query: 125 RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNS 184
                      +    L L  LS+  +      AF+ +             L L   N  
Sbjct: 168 ----DLRVLHQMPLLNLSL-DLSLNPMNFIQPGAFKEI---------RLKELALDT-NQL 212

Query: 185 KSLGVFSLASLRHLQTLQLTYNDLD 209
           KS+       L  LQ + L  N  D
Sbjct: 213 KSVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLSHS 70
            + L LS N    + S  F S   L+VL       +       +    +  L  L L+ +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVL-DLSRCEIQTIEDGAY--QSLSHLSTLILTGN 86

Query: 71  RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
            I+SL +  F  L +L+ L    T  ++ +    I +LK L+ L +  
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 15/114 (13%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL-------LFEISKVVSLQHLD 66
              L+ L         + +     + +L+ L     N +        F  S + +L+HLD
Sbjct: 99  LSSLQKLVAVETNLASLENFPIGHLKTLKEL-NVAHNLIQSFKLPEYF--SNLTNLEHLD 155

Query: 67  LSHSRIESLPIE-FKCLVNLKCLNLE---YTYGISRIPPKVISNLKILETLRMY 116
           LS ++I+S+     + L  +  LNL        ++ I P     ++ L+ L + 
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALD 208

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 5e-05
 Identities = 37/162 (22%), Positives = 60/162 (37%), Gaps = 25/162 (15%)

Query: 57  SKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
                LQ LDLS   I+++    ++ L +L  L L     I  +     S L  L+ L  
Sbjct: 49  FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107

Query: 116 YEC--AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
            E   A+L     +   G  + L  + L + H  + +  L     F  L         + 
Sbjct: 108 VETNLASLE----NFPIGHLKTL--KELNVAHNLIQSFKLPE--YFSNL--------TNL 151

Query: 174 PSLCLSHFNNSKSL--GVF-SLASLRHLQ-TLQLTYNDLDEI 211
             L LS  N  +S+       L  +  L  +L L+ N ++ I
Sbjct: 152 EHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSLQHLDLSHSRIES 74
              L LS N+ +  +         L  L       L  L     +  L  LDLSH++++S
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQL-NLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 75  LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           LP+  + L  L  L++ +   ++ +P   +  L  L+ L + 
Sbjct: 92  LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEI 56
             +  L      P L TL LS N    +     Q++ +L VL     N L          
Sbjct: 65  AELTKLQVDGTLPVLGTLDLSHNQLQSL-PLLGQTLPALTVL-DVSFNRLTSLPLGAL-- 120

Query: 57  SKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
             +  LQ L L  + +++LP         L+ L+L     ++ +P  +++ L+ L+TL +
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLL 179

Query: 116 Y 116
            
Sbjct: 180 Q 180

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 12/109 (11%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
           P L  L +S N    +     + +  L+ L +   N L      L   +    L+ L L+
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQEL-YLKGNELKTLPPGLL--TPTPKLEKLSLA 156

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           ++ +  LP      L NL  L L     +  IP     +   L    ++
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLL-QENSLYTIPKGFFGSHL-LPFAFLH 203

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 8/120 (6%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSY---SNPLLFEISKV 59
            ++ +L        ++ L +++      N +    +++L  L+      ++  +  +S +
Sbjct: 54  INVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGL 111

Query: 60  VSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
            SL  LD+SHS  +   +     L  +  ++L Y   I+ I P  +  L  L++L +   
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 35/184 (19%), Positives = 69/184 (37%), Gaps = 34/184 (18%)

Query: 55  EISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
             +++ SL ++ L++  +  L  IE+    N+K L +      +   P  IS L  LE L
Sbjct: 39  TEAQMNSLTYITLANINVTDLTGIEY--AHNIKDLTINNI-HATNYNP--ISGLSNLERL 93

Query: 114 RMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
           R+             +          L GL  L++  I+ +          + +P+    
Sbjct: 94  RIMGK----DVTSDKI--------PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN-- 139

Query: 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN 233
            S+ LS+  N     +  L +L  L++L + ++ + + +            I  F  L  
Sbjct: 140 -SIDLSY--NGAITDIMPLKTLPELKSLNIQFDGVHDYR-----------GIEDFPKLNQ 185

Query: 234 VYIS 237
           +Y  
Sbjct: 186 LYAF 189

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 61/315 (19%), Positives = 113/315 (35%), Gaps = 39/315 (12%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
           PR + L LS N    +       ++ LRVL     N +      +F       L++LD+S
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVL-RLSHNRIRSLDFHVFL--FNQDLEYLDVS 108

Query: 69  HSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSI 128
           H+R++++      + +L+ L+L +         K   NL  L  L +       + R   
Sbjct: 109 HNRLQNIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA----AKFRQL- 161

Query: 129 LFGDCRVLVEELLGLEHLSVFTITLNN--FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKS 186
                     +LL + HL +  I L+   +H       S      +   L     +    
Sbjct: 162 ----------DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211

Query: 187 LGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW 246
               S+ +L HLQ   +  ND +  ++                +L+++  +         
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271

Query: 247 LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS 306
            F    ++ + I N   + E ID E+F                L+ L++E +KN   + S
Sbjct: 272 FFWPRPVEYLNIYNL-TITERIDREEFT----------YSETALKSLMIEHVKNQVFLFS 320

Query: 307 KALPFPHLKEMSVDR 321
           K   +    EM++  
Sbjct: 321 KEALYSVFAEMNIKM 335

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 16  RLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSNPLLFEISK--VVSLQHLDLSHSRI 72
            L TL +S N  +            S+ VL    SN L   + +     ++ LDL ++RI
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVL-NLSSNMLTGSVFRCLPPKVKVLDLHNNRI 462

Query: 73  ESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
            S+P +   L  L+ LN+  +  +  +P  V   L  L+ + ++
Sbjct: 463 MSIPKDVTHLQALQELNV-ASNQLKSVPDGVFDRLTSLQYIWLH 505

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 41/218 (18%), Positives = 70/218 (32%), Gaps = 35/218 (16%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLS 68
              L +LFLS++  +   S  F+  ASL  L  S ++       L  +     L+ L++S
Sbjct: 76  LTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134

Query: 69  HSRIE-SLPIE-FKCLVNLKCLNLEYTYGISRIPP--KVISNLKILETLRMYECAALPQA 124
            + ++    +     L +L+ L+L              +      L+ L +       + 
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN----KI 190

Query: 125 RDSILFGDCRVLVE-------------ELLGLEHLSVFTITLNNFH-AFQRLLGSCMPQY 170
              +    C  L                L     L    I+ N     F R + +C    
Sbjct: 191 SGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC---- 246

Query: 171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDL 208
                L +S  +N    G      L+ LQ L L  N  
Sbjct: 247 TELKLLNIS--SNQFV-GPIPPLPLKSLQYLSLAENKF 281

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 44/244 (18%), Positives = 85/244 (34%), Gaps = 46/244 (18%)

Query: 49  SNPLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKV-ISNL 107
            + +   +  +  L+ L LS+S I      FKC  +L  L+L        +     + + 
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM 167
             L+ L +                D    V   L L  L V  ++ N+        G+ +
Sbjct: 126 SGLKFLNVSSN-----------TLDFPGKVSGGLKLNSLEVLDLSANSIS------GANV 168

Query: 168 PQYVSTPSLC-LSHF---NNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVL 223
             +V +     L H     N  S G   ++   +L+ L ++ N+       + G    + 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKIS-GDVDVSRCVNLEFLDVSSNNF------STG----IP 217

Query: 224 EISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKF-GEVPAEV 280
            +    +L+++ IS +K        +     LK + I + Q          F G +P   
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ----------FVGPIPPLP 267

Query: 281 MANL 284
           + +L
Sbjct: 268 LKSL 271

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 44/274 (16%), Positives = 82/274 (29%), Gaps = 69/274 (25%)

Query: 14  CPRLRTLFLSSNIFHR---VNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSLQHLDLS 68
              L  L LS+N       V          L+ L  S  N +    ++S+ V+L+ LD+S
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG-NKISGDVDVSRCVNLEFLDVS 208

Query: 69  HSRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA---ALPQA 124
            +     +P        L+ L++             IS    L+ L +        +P  
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL 266

Query: 125 RDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNS 184
                             L+ L   ++  N F                T  +        
Sbjct: 267 P-----------------LKSLQYLSLAENKF----------------TGEIPDFLSGAC 293

Query: 185 KSLGVF-------------SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL 231
            +L                   S   L++L L+ N+         GE+     +     L
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF-------SGELPMDT-LLKMRGL 345

Query: 232 KNVYISRSKFRHA--TWLF-LAPNLKRVEIDNCQ 262
           K + +S ++F       L  L+ +L  +++ +  
Sbjct: 346 KVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 42/336 (12%), Positives = 100/336 (29%), Gaps = 65/336 (19%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSLQHLDLSHSRIES 74
             +   ++      ++   + +A+L  L     + +  +  I K+  L  L  + + I +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHN-SSITDMTGIEKLTGLTKLICTSNNITT 78

Query: 75  LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AALPQARDSILFGD 132
           L        NL  L  +    ++ +    ++ L  L  L         L  +++ +L   
Sbjct: 79  LD--LSQNTNLTYLACDSNK-LTNLD---VTPLTKLTYLNCDTNKLTKLDVSQNPLL--- 129

Query: 133 CRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL 192
                   L     ++  I +++      L                   + +K +    +
Sbjct: 130 ------TYLNCARNTLTEIDVSHNTQLTEL-----------------DCHLNKKITKLDV 166

Query: 193 ASLRHLQTLQLTYNDLDEIKIDNGGEVKRV---------LEISGFHSLKNVYISRSKFRH 243
                L TL  ++N + E+ +     + R+         L+++    L  +  S +K   
Sbjct: 167 TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNK--- 223

Query: 244 ATWLFLAPNLKRVEIDNCQDMKEI-IDSEKFGEVPAEVMANL----IPFARLERLILEEL 298
                    L  +++     +           E+    ++ L         L  + L   
Sbjct: 224 ---------LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHN 274

Query: 299 KNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNR 334
             L    ++      +KE+ V     L  L      
Sbjct: 275 TQLIYFQAEGCRK--IKELDVTHNTQLYLLDCQAAG 308

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 41/332 (12%), Positives = 87/332 (26%), Gaps = 54/332 (16%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           + I ++        L  L  +SN    ++        +L  L    +     +++ +  L
Sbjct: 52  SSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLDVTPLTKL 108

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP 122
            +L+   +++  L         L  LN      ++ I    +S+   L  L  +    + 
Sbjct: 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKI- 161

Query: 123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFN 182
                +       L    L      +  + ++                     L     N
Sbjct: 162 ---TKLDVTPQTQLTT--LDCSFNKITELDVSQNKLLN--------------RLNCDT-N 201

Query: 183 NSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFR 242
           N   L    L     L  L  + N L EI            +++    L     S +   
Sbjct: 202 NITKL---DLNQNIQLTFLDCSSNKLTEI------------DVTPLTQLTYFDCSVNPLT 246

Query: 243 HATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK 302
                 L   L  +           +           +        +++ L +     L 
Sbjct: 247 ELDVSTL-SKLTTLHCIQTD-----LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300

Query: 303 TVHSKALPFPHLKEMSVDRCPLLKKLPLDCNR 334
            +         + E+ + + P L  L L+   
Sbjct: 301 LLD---CQAAGITELDLSQNPKLVYLYLNNTE 329

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 33/222 (14%), Positives = 63/222 (28%), Gaps = 30/222 (13%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           N +  +  S    +L  L    N   ++          L  L  S++     ++S+   L
Sbjct: 137 NTLTEIDVSH-NTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLL 193

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC--AA 120
             L+   + I  L +     + L  L+      ++ I    ++ L  L            
Sbjct: 194 NRLNCDTNNITKLDLN--QNIQLTFLDCSSNK-LTEID---VTPLTQLTYFDCSVNPLTE 247

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
           L  +  S L           L      +  I L +             +      L ++H
Sbjct: 248 LDVSTLSKL---------TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK---IKELDVTH 295

Query: 181 FNNSKSLGV-------FSLASLRHLQTLQLTYNDLDEIKIDN 215
                 L           L+    L  L L   +L E+ + +
Sbjct: 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSH 337

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 51/279 (18%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N I ++       +L  L++ +N    +++   Q++ +LR L +   + +  +  ++ + 
Sbjct: 76  NQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLREL-YLNEDNISDISPLANLT 132

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
            +  L+L  +   S       +  L  L +  +  +  + P  I+NL  L +L +     
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYN-- 187

Query: 121 LPQARDSILFGDCRVLVE---------------ELLGLEHLSVFTITLNNFHAFQRLLGS 165
             Q  D         L                  +  L  L +    + +      L   
Sbjct: 188 --QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANL--- 242

Query: 166 CMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEI 225
                     L +   N    +   ++  L  L+ L +  N + +I             +
Sbjct: 243 -----SQLTWLEIGT-NQISDIN--AVKDLTKLKMLNVGSNQISDIS-----------VL 283

Query: 226 SGFHSLKNVYISRSKFR--HATWLFLAPNLKRVEIDNCQ 262
           +    L +++++ ++        +    NL  + +    
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.8 bits (120), Expect = 5e-07
 Identities = 46/262 (17%), Positives = 90/262 (34%), Gaps = 41/262 (15%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             + ++V       +  L ++      +     + + +L  L  +  N +  +  +S +V
Sbjct: 32  ASVTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNG-NQITDISPLSNLV 88

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
            L +L +  ++I  +    + L NL+ L L     IS I P  ++NL  + +L +     
Sbjct: 89  KLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP--LANLTKMYSLNLGANH- 143

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
                      D   L   + GL +L+V    + +      L             L    
Sbjct: 144 --------NLSDLSPL-SNMTGLNYLTVTESKVKDVTPIANL-----------TDLYSLS 183

Query: 181 FNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240
            N ++   +  LASL  L       N + +I             ++    L ++ I  +K
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDIT-----------PVANMTRLNSLKIGNNK 232

Query: 241 FRHATWLFLAPNLKRVEIDNCQ 262
               + L     L  +EI   Q
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQ 254

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 41/247 (16%), Positives = 85/247 (34%), Gaps = 39/247 (15%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL-LFEISKVVSLQHLDLSHSRIESL 75
             TL       +++  D    +A         ++   +    ++ S+  L ++  ++ S+
Sbjct: 2   AATLATLPAPINQIFPD--ADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASI 59

Query: 76  PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRV 135
               + L NL+ LNL     I+ I P  +SNL  L  L +       +  D         
Sbjct: 60  Q-GIEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTN----KITD--------- 102

Query: 136 LVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL 195
            +  L  L +L    +  +N         S +       SL L   +N   L    L+++
Sbjct: 103 -ISALQNLTNLRELYLNEDNISDI-----SPLANLTKMYSLNLGANHNLSDLS--PLSNM 154

Query: 196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKR 255
             L  L +T + + ++             I+    L ++ ++ ++    + L    +L  
Sbjct: 155 TGLNYLTVTESKVKDVT-----------PIANLTDLYSLSLNYNQIEDISPLASLTSLHY 203

Query: 256 VEIDNCQ 262
                 Q
Sbjct: 204 FTAYVNQ 210

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 3e-07
 Identities = 38/211 (18%), Positives = 63/211 (29%), Gaps = 27/211 (12%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEI-----SKVVSLQHLDLSH 69
             +  + LS N    +N   F  +  L+ LK          I       + SL  L L +
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQ-QTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTY-GISRIPPKVISNLKILETLRMYECAALPQARDS 127
           ++   L    F  L NL+ L L       + +       L  LE L + +   + + + +
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPA 147

Query: 128 ILFGDCRVLVEELLGLEHLSVFTITLNNF-----HAFQRLLGSCMPQYVSTPSLCLSHFN 182
             F          L +    V  +T N              G      +   S+ L   N
Sbjct: 148 SFF----------LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF-TLLRLSSITLQDMN 196

Query: 183 NSK--SLGVFSLASLRHLQTLQLTYNDLDEI 211
                     +      + TL L+ N   E 
Sbjct: 197 EYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 36/210 (17%), Positives = 72/210 (34%), Gaps = 28/210 (13%)

Query: 15  PRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLS 68
             L+ L +        + ++ F+ ++SL +LK  Y+         F  + + +L+ L L+
Sbjct: 54  QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF--NGLANLEVLTLT 111

Query: 69  HSRIESLPIE---FKCLVNLKCLNLEYTYGISRIPPK-VISNLKILETLRMY------EC 118
              ++   +    FK L +L+ L L     I +I P     N++    L +        C
Sbjct: 112 QCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
                      F   R+    L  +    +      N      +         +T  L  
Sbjct: 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI---------TTLDLSG 221

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTYNDL 208
           + F  S +   F   +   +Q+L L+ +  
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 46/286 (16%), Positives = 84/286 (29%), Gaps = 42/286 (14%)

Query: 60  VSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
             + ++DLS + I  L    F  L +L+ L +E       I       L  L  L++   
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 119 --AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSL 176
               L        F     L    L   +L    ++ N F     L             L
Sbjct: 90  QFLQLETG----AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE-----------ML 134

Query: 177 CLSHFNNSKSL---GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKN 233
            L   NN K +     F   ++R    L LT+N +  I  ++              + + 
Sbjct: 135 VLRD-NNIKKIQPASFFL--NMRRFHVLDLTFNKVKSICEED------------LLNFQG 179

Query: 234 VYISRSKFRHATWLFLAPN----LKRVEIDNCQDMKEI-IDSEKFGEVPAEVMANLIPFA 288
            + +  +    T   +        K         +  + +    F E  A+   + I   
Sbjct: 180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239

Query: 289 RLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNR 334
           +++ LIL    N+ +       F      +            D ++
Sbjct: 240 KIQSLILSNSYNMGSSFGHTN-FKDPDNFTFKGLEASGVKTCDLSK 284

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 2/111 (1%)

Query: 7   NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLD 66
           N  +  +  R       + I   + S+ +   +S     +   +   F+  +   ++  D
Sbjct: 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCD 281

Query: 67  LSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           LS S+I +L    F    +L+ L L     I++I       L  L  L + 
Sbjct: 282 LSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLS 331

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 23/104 (22%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
              L  L LS N    ++S  F+++                       L+ LDLS++ I 
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENL---------------------DKLEVLDLSYNHIR 360

Query: 74  SLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           +L  + F  L NLK L L+    +  +P  +   L  L+ + ++
Sbjct: 361 ALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 403

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 4e-07
 Identities = 70/469 (14%), Positives = 125/469 (26%), Gaps = 166/469 (35%)

Query: 5   IENLVESP-VCPRLRTLFLS-----SNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISK 58
           I++++ S         LF +       +  +    F +      VL+ +Y    L     
Sbjct: 51  IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK----FVEE-----VLRINY--KFLMS--- 96

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
              ++      S +  + IE          +  Y           +S L+    LR    
Sbjct: 97  --PIKTEQRQPSMMTRMYIE--------QRDRLYN-DNQVFAKYNVSRLQPYLKLR---- 141

Query: 119 AALPQARDS---ILFGD--C--RVLVEELL---GLEHL---SVFTITLNNFH-------A 158
            AL + R +   ++ G        +  ++     ++      +F + L N +        
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 159 FQRLLGSCMPQYVSTPS-----------------------------LCLSHFNNSKSLGV 189
            Q+LL    P + S                                L L +  N+K+   
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 190 FSLASLRHLQTLQLTYN--DLDEIKIDNGGEVKRVLEISGFHS-------LKNVYISRSK 240
           F+L+     + L  T      D +       +                  LK +      
Sbjct: 262 FNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317

Query: 241 FRH---------------------ATWLFLAPNLKRVEIDNCQDMKEIIDS--------- 270
                                   ATW     N K V   NC  +  II+S         
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATW----DNWKHV---NCDKLTTIIESSLNVLEPAE 370

Query: 271 -----EKFGEVPAEVMANLIPFARLERL-----------ILEELKNLKTVHSKALPFPHL 314
                ++    P       IP   L  +           ++ +L      H  +L     
Sbjct: 371 YRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKL------HKYSLVEKQP 421

Query: 315 KEM--SVDRCPLLKKLPLDCNRGLERKIV----IKGQRRWWNEL-QWDD 356
           KE   S+    L  K+ L+    L R IV    I       + +  + D
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 67/396 (16%), Positives = 114/396 (28%), Gaps = 146/396 (36%)

Query: 3   NHIENL---VESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVL--KWSYSNPLL---- 53
             ++ L   ++     R      SSNI  R++S      A LR L     Y N LL    
Sbjct: 200 EMLQKLLYQIDPNWTSRSDH---SSNIKLRIHS----IQAELRRLLKSKPYENCLLVLLN 252

Query: 54  ---------FEIS---------------------KVVSLQHLDLSHSRIESLPIEFKCLV 83
                    F +S                       +SL H  ++ +  E   +      
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-L---- 307

Query: 84  NLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL 143
            LK L+         +P +V                  P                 ++  
Sbjct: 308 -LKYLDCR----PQDLPREV--------------LTTNP-------------RRLSIIA- 334

Query: 144 EHLSVFTITLNNF-----HAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHL 198
           E +     T +N+          ++ S +      P+     F     L VF  ++    
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMF---DRLSVFPPSAHIPT 389

Query: 199 QTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEI 258
             L L + D+ +       +V  V+                K    + +   P    + I
Sbjct: 390 ILLSLIWFDVIKS------DVMVVVN---------------KLHKYSLVEKQPKESTISI 428

Query: 259 DNCQ-DMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFP----- 312
            +   ++K  +++E                  L R I++     KT  S  L  P     
Sbjct: 429 PSIYLELKVKLENE----------------YALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 313 -------HLKEMS-VDRCPLLKKLPLDCNRGLERKI 340
                  HLK +   +R  L + + LD  R LE+KI
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDF-RFLEQKI 507

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 33/216 (15%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N +E L E    P L  ++  +N              SL  +     N L  L E+  + 
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNSL----KKLPDLPLSLESIVAGN-NILEELPELQNLP 237

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
            L  +   ++ +++LP     L  L   +      ++ +P  +  +L  L+       + 
Sbjct: 238 FLTTIYADNNLLKTLPDLPPSLEALNVRDNY----LTDLPE-LPQSLTFLDVSENI-FSG 291

Query: 121 LPQARDSILFGDC-----RVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS 175
           L +   ++ + +      R L +    LE L+   ++ N       L             
Sbjct: 292 LSELPPNLYYLNASSNEIRSLCDLPPSLEELN---VSNNKLIELPALPPRLE-------R 341

Query: 176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
           L  S  N+   +        ++L+ L + YN L E 
Sbjct: 342 LIASF-NHLAEVP----ELPQNLKQLHVEYNPLREF 372

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 45/213 (21%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N +E L E      L+ + + +N              SL  +     N L  L E+  + 
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSL----KKLPDLPPSLEFIAAGN-NQLEELPELQNLP 195

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC-- 118
            L  +   ++ ++ LP      ++L+ +       +  +P   + NL  L T+       
Sbjct: 196 FLTAIYADNNSLKKLP---DLPLSLESIVAGNNI-LEELPE--LQNLPFLTTIYADNNLL 249

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
             LP                       L    +  N       L  S          L +
Sbjct: 250 KTLPD------------------LPPSLEALNVRDNYLTDLPELPQSL-------TFLDV 284

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
           S  N    L         +L  L  + N++  +
Sbjct: 285 SE-NIFSGLS----ELPPNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 36/204 (17%), Positives = 59/204 (28%), Gaps = 49/204 (24%)

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC-- 118
            L+ L  S + +  LP   + L +L   N      +S +PP        LE L +     
Sbjct: 92  HLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDLPPL-------LEYLGVSNNQL 143

Query: 119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCL 178
             LP                EL     L +  +  N+      L  S          +  
Sbjct: 144 EKLP----------------ELQNSSFLKIIDVDNNSLKKLPDLPPSLE-------FIAA 180

Query: 179 SHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR 238
            + N  + L    L +L  L  +    N L ++                  SL+++    
Sbjct: 181 GN-NQLEEL--PELQNLPFLTAIYADNNSLKKL-------------PDLPLSLESIVAGN 224

Query: 239 SKFRHATWLFLAPNLKRVEIDNCQ 262
           +       L   P L  +  DN  
Sbjct: 225 NILEELPELQNLPFLTTIYADNNL 248

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           N I +L + P  P L  L +S+N       +       L  L  +  N L        +L
Sbjct: 307 NEIRSLCDLP--PSLEELNVSNNKL----IELPALPPRLERL-IASFNHLAEVPELPQNL 359

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL 110
           + L + ++ +   P   + + +L+  +      ++ +P     NLK L
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSH-----LAEVPEL-PQNLKQL 401

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
           NH+  + E P    L+ L +  N       +F     S+  L+   ++ L        +L
Sbjct: 347 NHLAEVPELP--QNLKQLHVEYNPL----REFPDIPESVEDLR--MNSHLAEVPELPQNL 398

Query: 63  QHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
           + L +  + +   P   + + +L+  +      +             LE  
Sbjct: 399 KQLHVETNPLREFPDIPESVEDLRMNSER----VVDPYEFAHETTDKLEDD 445

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 40/262 (15%), Positives = 86/262 (32%), Gaps = 64/262 (24%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           +++ + V       + TL         +  +  Q + +L  L     N +  L  +  + 
Sbjct: 29  SNVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGL-ELKDNQITDLAPLKNLT 85

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA 120
            +  L+LS + ++++      L ++K L+L  T  I+ + P  ++ L  L+ L +     
Sbjct: 86  KITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQ- 140

Query: 121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSH 180
                           +  +  L  L+                            L + +
Sbjct: 141 ----------------ITNISPLAGLTNLQ------------------------YLSIGN 160

Query: 181 FNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK 240
                 L    LA+L  L TL+   N + +I             ++   +L  V++  ++
Sbjct: 161 -AQVSDLT--PLANLSKLTTLKADDNKISDIS-----------PLASLPNLIEVHLKNNQ 206

Query: 241 FRHATWLFLAPNLKRVEIDNCQ 262
               + L    NL  V + N  
Sbjct: 207 ISDVSPLANTSNLFIVTLTNQT 228

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 7/113 (6%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             + +L       +L TL    N    +      S+ +L  +     N +  +  ++   
Sbjct: 161 AQVSDLTPLANLSKLTTLKADDNKISDI--SPLASLPNLIEVHLKN-NQISDVSPLANTS 217

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
           +L  + L++  I + P+ +    NL   N+      + I P  IS+     + 
Sbjct: 218 NLFIVTLTNQTITNQPVFYN--NNLVVPNVVKGPSGAPIAPATISDNGTYASP 268

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 34/198 (17%), Positives = 64/198 (32%), Gaps = 40/198 (20%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
                 L +  +    +       + +L +   + ++ L     +   L+ L++S +++ 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTS-LPALPPE---LRTLEVSGNQLT 94

Query: 74  SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDC 133
           SLP+    L+ L   +   T     +P  + S L  L  +   +  +LP           
Sbjct: 95  SLPVLPPGLLELSIFSNPLT----HLPA-LPSGLCKL-WIFGNQLTSLP----------- 137

Query: 134 RVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLA 193
                   GL+ LSV     N   +   L             L   + N   SL      
Sbjct: 138 ----VLPPGLQELSVSD---NQLASLPALPSELC-------KLWAYN-NQLTSLP----M 178

Query: 194 SLRHLQTLQLTYNDLDEI 211
               LQ L ++ N L  +
Sbjct: 179 LPSGLQELSVSDNQLASL 196

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 18  RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLSHSR 71
             + L  N    +    F     LR +  S  N +       F+   + SL  L L  ++
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQ--GLRSLNSLVLYGNK 91

Query: 72  IESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
           I  LP   F+ L +L+ L L     I+ +      +L  L  L +Y+
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYD 137

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
            +LR + LS+N    +  D FQ + SL  L   Y N +      LFE   + SLQ L L+
Sbjct: 56  KKLRRIDLSNNQISELAPDAFQGLRSLNSL-VLYGNKITELPKSLFE--GLFSLQLLLLN 112

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
            ++I  L ++ F+ L NL  L+L Y   +  I     S L+ ++T+ + +
Sbjct: 113 ANKINCLRVDAFQDLHNLNLLSL-YDNKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
           P+LR +  S+N    +    F+  + +  +    SN L      +F    + SL+ L L 
Sbjct: 57  PQLRKINFSNNKITDIEEGAFEGASGVNEI-LLTSNRLENVQHKMF--KGLESLKTLMLR 113

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
            +RI  +  + F  L +++ L+L Y   I+ + P     L  L TL + 
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSL-YDNQITTVAPGAFDTLHSLSTLNLL 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 18  RTLFLSSNIFHRVNSD-FFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLSHS 70
             L L++N F  + +   F+ +  LR +    +N +       FE      +  + L+ +
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKI-NFSNNKITDIEEGAFE--GASGVNEILLTSN 91

Query: 71  RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           R+E++  + FK L +LK L L     I+ +       L  +  L +Y
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLY 137

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
             L TL+++ N    +    F  + +L  L     N L      +F    +  L +L L 
Sbjct: 85  KNLETLWVTDNKLQALPIGVFDQLVNLAEL-RLDRNQLKSLPPRVF--DSLTKLTYLSLG 141

Query: 69  HSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           ++ ++SLP   F  L +LK L L Y   + R+P      L  L+TL++ 
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLD 189

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 51/204 (25%), Positives = 89/204 (43%), Gaps = 35/204 (17%)

Query: 17  LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLSHS 70
            + L L SN    + S  F  +  LR+L +   N L      +F   ++ +L+ L ++ +
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLL-YLNDNKLQTLPAGIF--KELKNLETLWVTDN 95

Query: 71  RIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA--ALPQARDS 127
           ++++LPI  F  LVNL  L L+    +  +PP+V  +L  L  L +      +LP+    
Sbjct: 96  KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG--- 151

Query: 128 ILFGDCRVLVEELLGLEHLSVFT--ITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
            +F       ++L  L+ L ++   +      AF +L            +L L + N  K
Sbjct: 152 -VF-------DKLTSLKELRLYNNQLKRVPEGAFDKL--------TELKTLKLDN-NQLK 194

Query: 186 SLGVFSLASLRHLQTLQLTYNDLD 209
            +   +  SL  L+ LQL  N  D
Sbjct: 195 RVPEGAFDSLEKLKMLQLQENPWD 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 29/207 (14%), Positives = 69/207 (33%), Gaps = 27/207 (13%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL------LFEISKVVSLQHLDLS 68
           P  +TL L       + S  F ++ ++  +  S    L       F    +  + H+++ 
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIR 88

Query: 69  HSR-IESLPIE-FKCLVNLKCLNLEYTYGISRIPPKV-ISNLKILETLRMYECAALPQAR 125
           ++R +  +  +  K L  LK L +  T G+   P    + +  I   L + +   +    
Sbjct: 89  NTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 126 DSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK 185
            +   G C   +   L L +    ++     +AF               ++ L+      
Sbjct: 148 VNAFQGLCNETLT--LKLYNNGFTSV---QGYAFNGT---------KLDAVYLNKNKYLT 193

Query: 186 SLGVFSLASLRH-LQTLQLTYNDLDEI 211
            +   +   +      L ++   +  +
Sbjct: 194 VIDKDAFGGVYSGPSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 9/108 (8%)

Query: 14  CPRLRTLFLSSNIFHRVNSD-FFQSMASLRVLKWSYSNPLLFEISK------VVSLQHLD 66
            P L+ L + +             S     +L+ +  NP +  I              L 
Sbjct: 104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT-DNPYMTSIPVNAFQGLCNETLTLK 162

Query: 67  LSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLK-ILETL 113
           L ++   S+         L  + L     ++ I       +      L
Sbjct: 163 LYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 12/98 (12%)

Query: 3   NHIENLVE---SPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV 59
            ++ ++       +C    TL L +N F  V    F     L  +  +  N  L  I K 
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYLN-KNKYLTVIDKD 198

Query: 60  V------SLQHLDLSHSRIESLPIE-FKCLVNLKCLNL 90
                      LD+S + + +LP +  + L  L   N 
Sbjct: 199 AFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             + + V       +  +  +++    V     Q + ++  L  +  N L  +  ++ + 
Sbjct: 34  KSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG-NKLTDIKPLANLK 90

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
           +L  L L  ++++ L    K L  LK L+LE+   IS I    + +L  LE+L
Sbjct: 91  NLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESL 139

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
           N +++L       +L++L L  N    +  +    +  L  L +  +N +  +  +S++ 
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL-YLGNNKITDITVLSRLT 156

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
            L  L L  ++I  +      L  L+ L L     IS +    ++ LK L+ L ++  
Sbjct: 157 KLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQ 210

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 44/208 (21%), Positives = 82/208 (39%), Gaps = 39/208 (18%)

Query: 56  ISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
            +++ S+  +  ++S I+S+    + L N+  L L     ++ I P  ++NLK L  L  
Sbjct: 42  QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLF- 96

Query: 116 YECAALPQARDSILFGDCRVL-VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTP 174
                           + +V  +  L  L+ L   ++  N       L    +PQ     
Sbjct: 97  --------------LDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL--VHLPQLE--- 137

Query: 175 SLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNV 234
           SL L + N    +    L+ L  L TL L  N + +I             ++G   L+N+
Sbjct: 138 SLYLGN-NKITDIT--VLSRLTKLDTLSLEDNQISDIV-----------PLAGLTKLQNL 183

Query: 235 YISRSKFRHATWLFLAPNLKRVEIDNCQ 262
           Y+S++       L    NL  +E+ + +
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQE 211

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 25/117 (21%)

Query: 3   NHIENLVESPVCPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVS 61
             +++L   P    L  L++ +      +     + +                       
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGL---------------------GE 57

Query: 62  LQHLDLSHSRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE 117
           L++L +  S +  +  + F     L  LNL +   +  +  K +  L  L+ L +  
Sbjct: 58  LRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS-LQELVLSG 112

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.7 bits (105), Expect = 3e-05
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 6/93 (6%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             +  L        +  L LS N    +      ++  L VL+ S  N L  +  ++ + 
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQAS-DNALENVDGVANLP 508

Query: 61  SLQHLDLSHSRIESLP--IEFKCLVNLKCLNLE 91
            LQ L L ++R++             L  LNL+
Sbjct: 509 RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 55  EISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
            + +++ + HLDLSH+R+ +LP     L  L+ L       +  +    ++NL  L+ L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG--VANLPRLQEL 513

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 17/110 (15%)

Query: 15  PRLRTLFLSSNIF----HRVNSDFFQSMASLRVLKWSYSNPLLFEISKVV--------SL 62
           P L TL LS N        +++       +L+VL  +  N  +   S V          L
Sbjct: 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVL--ALRNAGMETPSGVCSALAAARVQL 230

Query: 63  QHLDLSHSRIESLPIEFKC--LVNLKCLNLEYTYGISRIPPKVISNLKIL 110
           Q LDLSH+ +        C     L  LNL +T G+ ++P  + + L +L
Sbjct: 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVL 279

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 9/114 (7%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNS-DFFQSMASLRVLKWSYSNPL--LFEISKV 59
           N + +         L  L + +N   ++ S      ++ L VL     N +     ++++
Sbjct: 116 NELRDTDSLIHLKNLEILSIRNN---KLKSIVMLGFLSKLEVLDLHG-NEITNTGGLTRL 171

Query: 60  VSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
             +  +DL+  +  + P+++     L   N         I P  ISN       
Sbjct: 172 KKVNWIDLTGQKCVNEPVKY--QPELYITNTVKDPDGRWISPYYISNGGSYVDG 223

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 10/113 (8%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVV 60
             + +LV       ++     ++    +     Q   +L+ L     N +  L  +  + 
Sbjct: 29  QSVTDLVSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL-HLSHNQISDLSPLKDLT 85

Query: 61  SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL 113
            L+ L ++ +R+++  +       L  L L+    +       + +LK LE L
Sbjct: 86  KLEELSVNRNRLKN--LNGIPSACLSRLFLDNNE-LRDTDS--LIHLKNLEIL 133

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 29/210 (13%), Positives = 66/210 (31%), Gaps = 38/210 (18%)

Query: 53  LFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET 112
           +F    + +    +L    +  L    K L  ++  N + +  I  +    +     L+ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKE 67

Query: 113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS 172
           L +       Q  D          +  L  L  L   ++  N       +  +C+     
Sbjct: 68  LHLSHN----QISD----------LSPLKDLTKLEELSVNRNRLKNLNGIPSACL----- 108

Query: 173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK 232
              L L + N  +     SL  L++L+ L +  N L  I             +     L+
Sbjct: 109 -SRLFLDN-NELRDTD--SLIHLKNLEILSIRNNKLKSIV-----------MLGFLSKLE 153

Query: 233 NVYISRSKFRHATWLFLAPNLKRVEIDNCQ 262
            + +  ++  +   L     +  +++   +
Sbjct: 154 VLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 14/117 (11%)

Query: 3   NHIENLVESPV--CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISK 58
           N I +L  SP+    +L  L ++ N   R+ +      A L  L +  +N L     +  
Sbjct: 73  NQISDL--SPLKDLTKLEELSVNRN---RLKNLNGIPSACLSRL-FLDNNELRDTDSLIH 126

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM 115
           + +L+ L + +++++S+      L  L+ L+L     I+      ++ LK +  + +
Sbjct: 127 LKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGG--LTRLKKVNWIDL 179

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 35/218 (16%), Positives = 71/218 (32%), Gaps = 25/218 (11%)

Query: 3   NHIENLVESP---VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKV 59
            +    V      +  +   L L+      +  +    +  L +     +   L  + ++
Sbjct: 44  ENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEI-----TQNALISLPEL 98

Query: 60  V-SLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC 118
             SL++LD   +R+ +LP     L +L   N +    ++ +P  + + L+ +      + 
Sbjct: 99  PASLEYLDACDNRLSTLPELPASLKHLDVDNNQ----LTMLPE-LPALLEYIN-ADNNQL 152

Query: 119 AALPQARDSILFGDC-----RVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST 173
             LP+   S+            L E    LE L V T   N   +   +         + 
Sbjct: 153 TMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVST---NLLESLPAVPVRNHHSEETE 209

Query: 174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI 211
                   N    +   ++ SL    T+ L  N L   
Sbjct: 210 IFFRCRE-NRITHIP-ENILSLDPTCTIILEDNPLSSR 245

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)

Query: 16  RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN------PLLFEISKVVSLQHLDLSH 69
           +L  L L  N    +++  F  +  L  L    +N        +F+   +  L  L L  
Sbjct: 60  KLTWLNLDYNQLQTLSAGVFDDLTELGTL-GLANNQLASLPLGVFD--HLTQLDKLYLGG 116

Query: 70  SRIESLPIE-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMY 116
           ++++SLP   F  L  LK L L  T  +  IP      L  L+TL + 
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSLS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 5   IENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISKVVSL 62
           I +L        LR L L  N+  ++  +      +L  L  SY N +  L  I K+V+L
Sbjct: 63  ISSL---SGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISY-NQIASLSGIEKLVNL 117

Query: 63  QHLDLSHSRIESLPI--EFKCLVNLKCLNLE 91
           + L +S+++I +     +   L  L+ L L 
Sbjct: 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.92
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.87
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.8
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.78
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.77
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.77
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.76
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.73
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.73
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.72
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.56
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.54
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.45
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.44
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.36
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.15
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.12
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.92
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.91
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.85
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.83
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.79
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.72
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.65
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.48
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.82
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.43
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.28
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.19
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.79

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.3e-26  Score=211.18  Aligned_cols=273  Identities=15%  Similarity=0.207  Sum_probs=178.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      ++.++.++....+++|++|++++|.++.++.  +..+++|++|++++|. .....+..+++|++|++++|.++.++. +.
T Consensus        53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~  129 (347)
T 4fmz_A           53 GEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LA  129 (347)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GT
T ss_pred             CCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh-hc
Confidence            3455666655667777777777777776665  6777777777777776 223356777777777777777766655 66


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      .+++|+.|++++|......+.  +..+++|++|++++| .+..++             .+..+++|+.++++++....+.
T Consensus       130 ~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~-~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~  193 (347)
T 4fmz_A          130 NLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTES-KVKDVT-------------PIANLTDLYSLSLNYNQIEDIS  193 (347)
T ss_dssp             TCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCSEEECTTSCCCCCG
T ss_pred             cCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCC-CcCCch-------------hhccCCCCCEEEccCCcccccc
Confidence            777777777777755544433  677777777777777 554221             2566777777777777666555


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK  240 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (370)
                      .+....     .++.+.+.++.-....   .+..+++|++|++++|.++.++. +          ..+++|++|++++|+
T Consensus       194 ~~~~l~-----~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~-~----------~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          194 PLASLT-----SLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP-L----------ANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             GGGGCT-----TCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSC
T ss_pred             cccCCC-----ccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc-h----------hcCCCCCEEECCCCc
Confidence            433333     2555666554332222   36677788888888877776643 1          567788888888887


Q ss_pred             ccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccCCCcceEee
Q 017525          241 FRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPFPHLKEMSV  319 (370)
Q Consensus       241 l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l  319 (370)
                      ++.++.+..+++|+.|++++|.. +++              ..+..+++|+.|++++| .+..... ....+++|+.|++
T Consensus       255 l~~~~~~~~l~~L~~L~l~~n~l-~~~--------------~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L  318 (347)
T 4fmz_A          255 ISDINAVKDLTKLKMLNVGSNQI-SDI--------------SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFL  318 (347)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCC-CCC--------------GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEEC
T ss_pred             cCCChhHhcCCCcCEEEccCCcc-CCC--------------hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEc
Confidence            77777777788888888888753 222              14567788888888887 3444332 2345788888888


Q ss_pred             cCCCCCCCCC
Q 017525          320 DRCPLLKKLP  329 (370)
Q Consensus       320 ~~c~~L~~l~  329 (370)
                      ++|+ ++.++
T Consensus       319 ~~n~-l~~~~  327 (347)
T 4fmz_A          319 SQNH-ITDIR  327 (347)
T ss_dssp             CSSS-CCCCG
T ss_pred             cCCc-ccccc
Confidence            8875 55443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=3e-26  Score=212.13  Aligned_cols=274  Identities=18%  Similarity=0.184  Sum_probs=160.1

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL   88 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L   88 (370)
                      .+++++.|+++++.++.+|..++..+++|++|++++|.  . .+..+..+++|++|++++|.++.++. .++.+++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            44566666666666666666555666666666666665  2 22355566666666666666654433 35566666666


Q ss_pred             eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCC
Q 017525           89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMP  168 (370)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  168 (370)
                      ++++| .+..+|..++.++++|++|++++| .+..++           ...+..+++|+.|+++.+...... +.....+
T Consensus       123 ~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L  188 (390)
T 3o6n_A          123 VLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERIE-----------DDTFQATTSLQNLQLSSNRLTHVD-LSLIPSL  188 (390)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCC-----------TTTTSSCTTCCEEECCSSCCSBCC-GGGCTTC
T ss_pred             ECCCC-ccCcCCHHHhcCCCCCcEEECCCC-ccCccC-----------hhhccCCCCCCEEECCCCcCCccc-ccccccc
Confidence            66665 444555544556666666666665 443221           223444455555555554433221 1111111


Q ss_pred             Ccc--------------ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEE
Q 017525          169 QYV--------------STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNV  234 (370)
Q Consensus       169 ~~l--------------~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (370)
                      ..+              .++.+.+.++.-....    ....++|+.|++++|.++..+  ++         ..+++|++|
T Consensus       189 ~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~l~~~~--~l---------~~l~~L~~L  253 (390)
T 3o6n_A          189 FHANVSYNLLSTLAIPIAVEELDASHNSINVVR----GPVNVELTILKLQHNNLTDTA--WL---------LNYPGLVEV  253 (390)
T ss_dssp             SEEECCSSCCSEEECCSSCSEEECCSSCCCEEE----CCCCSSCCEEECCSSCCCCCG--GG---------GGCTTCSEE
T ss_pred             ceeecccccccccCCCCcceEEECCCCeeeecc----ccccccccEEECCCCCCcccH--HH---------cCCCCccEE
Confidence            110              3555555554322111    123467888888888877652  11         567888888


Q ss_pred             EEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCC
Q 017525          235 YISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFP  312 (370)
Q Consensus       235 ~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~  312 (370)
                      ++++|+++++  ..+..+++|+.|++++|.... +             +.....+|+|+.|+++++ .++.++.....++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~-------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~  318 (390)
T 3o6n_A          254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-L-------------NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFD  318 (390)
T ss_dssp             ECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-E-------------ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHT
T ss_pred             ECCCCcCCCcChhHccccccCCEEECCCCcCcc-c-------------CcccCCCCCCCEEECCCC-cceecCccccccC
Confidence            8888877664  356778888888888876422 2             234567788888888887 5666666556678


Q ss_pred             CcceEeecCCCCCCCCCCC
Q 017525          313 HLKEMSVDRCPLLKKLPLD  331 (370)
Q Consensus       313 ~L~~L~l~~c~~L~~l~~~  331 (370)
                      +|+.|++.+++ ++.+++.
T Consensus       319 ~L~~L~L~~N~-i~~~~~~  336 (390)
T 3o6n_A          319 RLENLYLDHNS-IVTLKLS  336 (390)
T ss_dssp             TCSEEECCSSC-CCCCCCC
T ss_pred             cCCEEECCCCc-cceeCch
Confidence            88888888764 6666643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=1.8e-25  Score=203.69  Aligned_cols=268  Identities=17%  Similarity=0.228  Sum_probs=216.8

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +|.++.++....+++|++|++++|.++.++.  +..+++|++|++++|.  .++. +..+++|++|++++|.....+..+
T Consensus        75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~  151 (347)
T 4fmz_A           75 GNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPL  151 (347)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGG
T ss_pred             CCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccch
Confidence            5678888877899999999999999988764  8999999999999999  5554 889999999999999554344458


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      ..+++|+.|++++| .+..++.  +..+++|++|++++| .+..++             .+..+++|+.+++..+.....
T Consensus       152 ~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n-~l~~~~-------------~~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          152 SNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYN-QIEDIS-------------PLASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTS-CCCCCG-------------GGGGCTTCCEEECCSSCCCCC
T ss_pred             hhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCC-cccccc-------------cccCCCccceeecccCCCCCC
Confidence            89999999999998 4555544  789999999999999 776332             277889999999999987766


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      ..+....     .++.+.+.++.-....   .+..+++|++|++++|.++.++ .+          ..+++|++|++++|
T Consensus       215 ~~~~~~~-----~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~-~~----------~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          215 TPVANMT-----RLNSLKIGNNKITDLS---PLANLSQLTWLEIGTNQISDIN-AV----------KDLTKLKMLNVGSN  275 (347)
T ss_dssp             GGGGGCT-----TCCEEECCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG-GG----------TTCTTCCEEECCSS
T ss_pred             chhhcCC-----cCCEEEccCCccCCCc---chhcCCCCCEEECCCCccCCCh-hH----------hcCCCcCEEEccCC
Confidence            5544443     3778888776543333   4888999999999999988763 12          57899999999999


Q ss_pred             cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEee
Q 017525          240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSV  319 (370)
Q Consensus       240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l  319 (370)
                      ++++++.+..+++|+.|++++|.......             ..+..+++|+.|++++|. ++.+.. ...+++|++|++
T Consensus       276 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l  340 (347)
T 4fmz_A          276 QISDISVLNNLSQLNSLFLNNNQLGNEDM-------------EVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADF  340 (347)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCGGGH-------------HHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESS
T ss_pred             ccCCChhhcCCCCCCEEECcCCcCCCcCh-------------hHhhccccCCEEEccCCc-cccccC-hhhhhccceeeh
Confidence            99998888999999999999997544332             356789999999999994 666655 567999999999


Q ss_pred             cCCC
Q 017525          320 DRCP  323 (370)
Q Consensus       320 ~~c~  323 (370)
                      .+|+
T Consensus       341 ~~N~  344 (347)
T 4fmz_A          341 ANQV  344 (347)
T ss_dssp             SCC-
T ss_pred             hhhc
Confidence            9875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-25  Score=207.02  Aligned_cols=258  Identities=19%  Similarity=0.294  Sum_probs=189.0

Q ss_pred             hcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCc
Q 017525           36 QSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILE  111 (370)
Q Consensus        36 ~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~  111 (370)
                      ..++++++|+++++.  .+|.. +..+++|++|++++|.++.++. .++.+++|++|++++| .+..++...++++++|+
T Consensus        42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence            357899999999998  66655 6889999999999999987765 7899999999999999 56666665689999999


Q ss_pred             EEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCcccc
Q 017525          112 TLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGV  189 (370)
Q Consensus       112 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~  189 (370)
                      +|++++| .+..++           ...+..+++|+.|+++++.+..+..  +....     +|+.+.+.++.- +..  
T Consensus       121 ~L~L~~n-~l~~l~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l-~~~--  180 (390)
T 3o6n_A          121 VLVLERN-DLSSLP-----------RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT-----SLQNLQLSSNRL-THV--  180 (390)
T ss_dssp             EEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT-----TCCEEECCSSCC-SBC--
T ss_pred             EEECCCC-ccCcCC-----------HHHhcCCCCCcEEECCCCccCccChhhccCCC-----CCCEEECCCCcC-Ccc--
Confidence            9999999 776433           2335778999999999998765432  22222     377777766532 222  


Q ss_pred             ccccccCCCcEEEEecCCcccceecc-------CCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525          190 FSLASLRHLQTLQLTYNDLDEIKIDN-------GGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       190 ~~l~~l~~L~~L~l~~~~l~~~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~  262 (370)
                       .+..+++|+.|++++|.++.++...       .+.....+|...+++|++|++++|++++++++..+++|++|++++|.
T Consensus       181 -~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~  259 (390)
T 3o6n_A          181 -DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNE  259 (390)
T ss_dssp             -CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             -ccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCc
Confidence             2444556666666655554432110       00000001224567999999999999888889999999999999997


Q ss_pred             chHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCC
Q 017525          263 DMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPL  330 (370)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~  330 (370)
                      ... +            .+..+..+++|+.|+++++ .++.++.....+++|+.|++++| +++.+|.
T Consensus       260 l~~-~------------~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  312 (390)
T 3o6n_A          260 LEK-I------------MYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER  312 (390)
T ss_dssp             CCE-E------------ESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG
T ss_pred             CCC-c------------ChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc
Confidence            433 2            1246778999999999998 67788776778999999999987 4666554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=8.3e-26  Score=220.41  Aligned_cols=284  Identities=18%  Similarity=0.224  Sum_probs=146.7

Q ss_pred             cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc
Q 017525            3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      |.+..+|..  ..+++|++|++++|.++.+++..+..+++|++|++++|.   ..|..++++++|++|++++|.++.+|.
T Consensus        61 ~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~  140 (597)
T 3oja_B           61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR  140 (597)
T ss_dssp             CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence            334445543  455666666666666665555445666666666666665   233344566666666666666665555


Q ss_pred             c-cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCccccccccc-----CCcchhhhhcccCCCccEEEE
Q 017525           78 E-FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILF-----GDCRVLVEELLGLEHLSVFTI  151 (370)
Q Consensus        78 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~~~~l~~l~~L~~l~l  151 (370)
                      . ++.+++|++|++++| .+..++...++++++|++|++++| .+..++.....     +.....+..+....+|+.+++
T Consensus       141 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l  218 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA  218 (597)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred             HHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeec
Confidence            4 356666666666666 333333333566666666666666 44422210000     000000011111222333333


Q ss_pred             EecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525          152 TLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL  231 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L  231 (370)
                      +.+.+..++...     .. .|+.|.+.++.-...   ..+..+++|+.|++++|.+..+....+         ..+++|
T Consensus       219 s~n~l~~~~~~~-----~~-~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L  280 (597)
T 3oja_B          219 SHNSINVVRGPV-----NV-ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF---------VKMQRL  280 (597)
T ss_dssp             CSSCCCEEECSC-----CS-CCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG---------TTCSSC
T ss_pred             cCCccccccccc-----CC-CCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh---------cCccCC
Confidence            333322221100     01 345555554432221   345666677777777776666543332         456777


Q ss_pred             cEEEEecccccccCc-ccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCcc
Q 017525          232 KNVYISRSKFRHATW-LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALP  310 (370)
Q Consensus       232 ~~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~  310 (370)
                      ++|+|++|+++.++. ...+++|+.|+|++|... .+             +..+..+++|+.|++++| .+..++  ...
T Consensus       281 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i-------------~~~~~~l~~L~~L~L~~N-~l~~~~--~~~  343 (597)
T 3oja_B          281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HV-------------ERNQPQFDRLENLYLDHN-SIVTLK--LST  343 (597)
T ss_dssp             CEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CC-------------GGGHHHHTTCSEEECCSS-CCCCCC--CCT
T ss_pred             CEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-cc-------------CcccccCCCCCEEECCCC-CCCCcC--hhh
Confidence            777777776666543 334677777777776542 22             234566777777777776 344443  335


Q ss_pred             CCCcceEeecCCC
Q 017525          311 FPHLKEMSVDRCP  323 (370)
Q Consensus       311 ~~~L~~L~l~~c~  323 (370)
                      ++.|+.|++++++
T Consensus       344 ~~~L~~L~l~~N~  356 (597)
T 3oja_B          344 HHTLKNLTLSHND  356 (597)
T ss_dssp             TCCCSEEECCSSC
T ss_pred             cCCCCEEEeeCCC
Confidence            6777777776654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=206.90  Aligned_cols=285  Identities=20%  Similarity=0.190  Sum_probs=204.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.+|..
T Consensus        20 ~~~l~~ip~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   98 (477)
T 2id5_A           20 RKRFVAVPEG-IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG   98 (477)
T ss_dssp             SCCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred             CCCcCcCCCC-CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence            3567777764 34789999999999998877668999999999999998   4578899999999999999999988874


Q ss_pred             -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                       +..+++|++|++++| .+..++...+.++++|++|++++| .+..+           ....+..+++|+.|+++.+...
T Consensus        99 ~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A           99 VFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDN-DLVYI-----------SHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             SSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCT-TCCEE-----------CTTSSTTCTTCCEEEEESCCCS
T ss_pred             cccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCC-cccee-----------ChhhccCCCCCCEEECCCCcCc
Confidence             688999999999999 445454445899999999999999 66532           2445777889999999988776


Q ss_pred             hhHh--hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccCcEE
Q 017525          158 AFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSLKNV  234 (370)
Q Consensus       158 ~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (370)
                      .++.  +....     +|+.+.+.++.-.. .....+..+++|+.|++++|. +..++...          ....+|++|
T Consensus       166 ~~~~~~l~~l~-----~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----------~~~~~L~~L  229 (477)
T 2id5_A          166 SIPTEALSHLH-----GLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNC----------LYGLNLTSL  229 (477)
T ss_dssp             SCCHHHHTTCT-----TCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTT----------TTTCCCSEE
T ss_pred             ccChhHhcccC-----CCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCccc----------ccCccccEE
Confidence            5542  22222     36777776654322 223357778888888888854 33333222          223478888


Q ss_pred             EEecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccC
Q 017525          235 YISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPF  311 (370)
Q Consensus       235 ~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~  311 (370)
                      ++++|+++.++  .+..+++|+.|+|++|.. +.+.            +..+..+++|+.|+++++ .++.+.. ....+
T Consensus       230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l  295 (477)
T 2id5_A          230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE------------GSMLHELLRLQEIQLVGG-QLAVVEPYAFRGL  295 (477)
T ss_dssp             EEESSCCCSCCHHHHTTCTTCCEEECCSSCC-CEEC------------TTSCTTCTTCCEEECCSS-CCSEECTTTBTTC
T ss_pred             ECcCCcccccCHHHhcCccccCeeECCCCcC-CccC------------hhhccccccCCEEECCCC-ccceECHHHhcCc
Confidence            88888777765  466788888888888763 2221            135667778888888776 4555533 33457


Q ss_pred             CCcceEeecCCCCCCCCCCC
Q 017525          312 PHLKEMSVDRCPLLKKLPLD  331 (370)
Q Consensus       312 ~~L~~L~l~~c~~L~~l~~~  331 (370)
                      ++|+.|+++++ +++.+|..
T Consensus       296 ~~L~~L~L~~N-~l~~~~~~  314 (477)
T 2id5_A          296 NYLRVLNVSGN-QLTTLEES  314 (477)
T ss_dssp             TTCCEEECCSS-CCSCCCGG
T ss_pred             ccCCEEECCCC-cCceeCHh
Confidence            77888888776 46665544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=2.9e-25  Score=210.97  Aligned_cols=282  Identities=21%  Similarity=0.237  Sum_probs=216.5

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCccccc-
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESL-   75 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~l-   75 (370)
                      +|.++.++..  .++++|++|++++|.++.+.+..+.++++|++|++++|.  .+|. .+.++++|++|++++|.++.+ 
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~  120 (477)
T 2id5_A           41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL  120 (477)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred             CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC
Confidence            5778888654  789999999999999998866668999999999999998  5554 578999999999999999865 


Q ss_pred             CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      |..+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|++..+.
T Consensus       121 ~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          121 DYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKC-NLTSIP-----------TEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             TTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESC-CCSSCC-----------HHHHTTCTTCCEEEEESCC
T ss_pred             hhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCC-cCcccC-----------hhHhcccCCCcEEeCCCCc
Confidence            457889999999999998 555555545999999999999999 776432           3457788999999999987


Q ss_pred             hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525          156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY  235 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (370)
                      ...+... ....+.  .|+.+.+.++........ ......+|++|++++|.++.++...+         ..+++|++|+
T Consensus       188 i~~~~~~-~~~~l~--~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~  254 (477)
T 2id5_A          188 INAIRDY-SFKRLY--RLKVLEISHWPYLDTMTP-NCLYGLNLTSLSITHCNLTAVPYLAV---------RHLVYLRFLN  254 (477)
T ss_dssp             CCEECTT-CSCSCT--TCCEEEEECCTTCCEECT-TTTTTCCCSEEEEESSCCCSCCHHHH---------TTCTTCCEEE
T ss_pred             CcEeChh-hcccCc--ccceeeCCCCccccccCc-ccccCccccEEECcCCcccccCHHHh---------cCccccCeeE
Confidence            7654321 112222  478888888766554422 23334589999999999887764433         5688999999


Q ss_pred             EecccccccC--cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-ccCC
Q 017525          236 ISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LPFP  312 (370)
Q Consensus       236 l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~~~  312 (370)
                      +++|+++.++  .+..+++|+.|+|++|.... +            .+..+..+++|+.|+++++ .++.++... ..++
T Consensus       255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~  320 (477)
T 2id5_A          255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAV-V------------EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVG  320 (477)
T ss_dssp             CCSSCCCEECTTSCTTCTTCCEEECCSSCCSE-E------------CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGG
T ss_pred             CCCCcCCccChhhccccccCCEEECCCCccce-E------------CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCc
Confidence            9999887764  46788999999999886432 2            1246778899999999987 677665543 3578


Q ss_pred             CcceEeecCCC
Q 017525          313 HLKEMSVDRCP  323 (370)
Q Consensus       313 ~L~~L~l~~c~  323 (370)
                      +|+.|++.+++
T Consensus       321 ~L~~L~l~~N~  331 (477)
T 2id5_A          321 NLETLILDSNP  331 (477)
T ss_dssp             GCCEEECCSSC
T ss_pred             ccCEEEccCCC
Confidence            89999887664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=6.1e-25  Score=214.90  Aligned_cols=120  Identities=21%  Similarity=0.182  Sum_probs=90.6

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.++.++..  .++++|++|++++|.++.+++..|.++++|++|++++|.   ..|..++++++|++|++++|.++.++
T Consensus        41 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~  120 (606)
T 3vq2_A           41 FNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE  120 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSS
T ss_pred             CCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccc
Confidence            4666767663  678888888888888887766667888888888888887   34777888888888888888887666


Q ss_pred             -cccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcc
Q 017525           77 -IEFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQ  123 (370)
Q Consensus        77 -~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~  123 (370)
                       ..++.+++|++|++++|...+ .+|.. ++++++|++|++++| .+..
T Consensus       121 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n-~l~~  167 (606)
T 3vq2_A          121 SFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYN-YIQT  167 (606)
T ss_dssp             SSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSS-CCCE
T ss_pred             ccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCC-ccee
Confidence             467788888888888884433 45654 888888888888887 5543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=206.30  Aligned_cols=116  Identities=22%  Similarity=0.218  Sum_probs=99.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      +|.++.+|.... ++|++|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.+|..
T Consensus         9 ~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~   87 (520)
T 2z7x_B            9 KNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH   87 (520)
T ss_dssp             TSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC
T ss_pred             CCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc
Confidence            578888887633 899999999999999988779999999999999998   4578899999999999999999988877


Q ss_pred             cccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCc
Q 017525           79 FKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                        .+++|++|++++|...+ .+|.. ++++++|++|++++| .+.
T Consensus        88 --~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n-~l~  128 (520)
T 2z7x_B           88 --PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTT-HLE  128 (520)
T ss_dssp             --CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEES-SCC
T ss_pred             --ccCCccEEeccCCccccccchhh-hccCCcceEEEecCc-ccc
Confidence              89999999999995433 34554 899999999999988 554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.93  E-value=4.3e-25  Score=208.53  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=76.7

Q ss_pred             CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhcccc
Q 017525          196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDSEKF  273 (370)
Q Consensus       196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~~~~  273 (370)
                      ++|+.|++++|.+..+....+         ..+++|++|++++|+++++.  .+..+++|+.|++++|.. +.+      
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~------  338 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVF---------SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSI------  338 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTT---------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-CEE------
T ss_pred             cCceEEEecCccccccchhhc---------ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc-CCc------
Confidence            578888888887776654433         46778888888888776653  566788888888888764 222      


Q ss_pred             CCCcccccCCcccccccccccccccccccccc-CCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          274 GEVPAEVMANLIPFARLERLILEELKNLKTVH-SKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       274 ~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~-~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                            .+..+..+++|+.|+++++ .++.+. .....+++|+.|+++++ +++.+|.+.
T Consensus       339 ------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~  390 (455)
T 3v47_A          339 ------DSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPDGI  390 (455)
T ss_dssp             ------CGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTT
T ss_pred             ------ChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCHhH
Confidence                  1235667788888888877 455553 33456778888888775 566666544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.93  E-value=1.5e-24  Score=205.44  Aligned_cols=107  Identities=21%  Similarity=0.277  Sum_probs=78.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      ++.++.+|....+++|++|++++|.++.+++  +.++++|++|++++|.  ..+. +.++++|++|++++|.++.++. +
T Consensus        55 ~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~  130 (466)
T 1o6v_A           55 RLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-L  130 (466)
T ss_dssp             SSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-G
T ss_pred             CCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-H
Confidence            4566777766778888888888888887776  7888888888888888  4444 7888888888888888887765 7


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM  115 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  115 (370)
                      +.+++|++|++++|. +..++.  +.++++|++|++
T Consensus       131 ~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l  163 (466)
T 1o6v_A          131 KNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSF  163 (466)
T ss_dssp             TTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEE
T ss_pred             cCCCCCCEEECCCCc-cCCChh--hccCCcccEeec
Confidence            788888888888873 443332  444444444444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=1.3e-24  Score=212.68  Aligned_cols=102  Identities=22%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~   91 (370)
                      .+++|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            45555555555555544335555555555555554   3344455555555555555555433 3345555555555555


Q ss_pred             CcccccccCcccccCCCCCcEEEcccc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +| .+..++...++++++|++|++++|
T Consensus       114 ~n-~i~~l~~~~~~~l~~L~~L~L~~n  139 (606)
T 3t6q_A          114 QT-GISSIDFIPLHNQKTLESLYLGSN  139 (606)
T ss_dssp             TS-CCSCGGGSCCTTCTTCCEEECCSS
T ss_pred             cc-CcccCCcchhccCCcccEEECCCC
Confidence            55 233332222455555555555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.92  E-value=9.4e-25  Score=206.16  Aligned_cols=296  Identities=17%  Similarity=0.183  Sum_probs=176.3

Q ss_pred             cccccccCC--CCCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccc-c
Q 017525            3 NHIENLVES--PVCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIES-L   75 (370)
Q Consensus         3 n~l~~l~~~--~~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~-l   75 (370)
                      |.++.+++.  .++++|++|++++|.+. .+++..+.++++|++|++++|.   ..|..++++++|++|++++|.++. +
T Consensus        40 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  119 (455)
T 3v47_A           40 NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAV  119 (455)
T ss_dssp             SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHH
T ss_pred             CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccc
Confidence            445555332  55666666666666554 4444445666666666666665   335556666666666666666652 2


Q ss_pred             Ccc--cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCC---------------------
Q 017525           76 PIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGD---------------------  132 (370)
Q Consensus        76 p~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------------  132 (370)
                      +..  ++.+++|++|++++|...+..|...+.++++|++|++++| .+...........                     
T Consensus       120 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~  198 (455)
T 3v47_A          120 LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY  198 (455)
T ss_dssp             HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTT
T ss_pred             cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchh
Confidence            332  5566666666666663333334333566667777777666 4443221100000                     


Q ss_pred             --cchhhhhcccCCCccEEEEEecchhhh--HhhhcC---CCCCc-------------------------------cccC
Q 017525          133 --CRVLVEELLGLEHLSVFTITLNNFHAF--QRLLGS---CMPQY-------------------------------VSTP  174 (370)
Q Consensus       133 --~~~~~~~l~~l~~L~~l~l~~~~~~~~--~~~~~~---~~~~~-------------------------------l~L~  174 (370)
                        .......+..+++|+.|+++++.+...  ..+...   .++..                               ..++
T Consensus       199 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  278 (455)
T 3v47_A          199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVK  278 (455)
T ss_dssp             CTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCC
T ss_pred             hccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCce
Confidence              000001122335677777777754321  111111   00000                               0245


Q ss_pred             cEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCC
Q 017525          175 SLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPN  252 (370)
Q Consensus       175 ~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~  252 (370)
                      .+++.++.-. ......+..+++|++|++++|.++.++...+         ..+++|++|++++|+++.+  ..+..+++
T Consensus       279 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          279 TCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF---------WGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             EEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             EEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHh---------cCcccCCEEECCCCccCCcChhHhcCccc
Confidence            5555543322 2212357788999999999999988765443         5689999999999988776  35778999


Q ss_pred             ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-ccCCCcceEeecCCC
Q 017525          253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LPFPHLKEMSVDRCP  323 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~~~~L~~L~l~~c~  323 (370)
                      |++|+|++|.. +.+            .+..+..+++|++|+++++ .++.++... ..+++|+.|++++++
T Consensus       349 L~~L~Ls~N~l-~~~------------~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          349 LEVLDLSYNHI-RAL------------GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCEEECCSSCC-CEE------------CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEECCCCcc-ccc------------ChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence            99999999974 322            1246788999999999997 677776654 468889999998875

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=2.5e-25  Score=218.37  Aligned_cols=307  Identities=11%  Similarity=0.126  Sum_probs=207.8

Q ss_pred             ccCC-C--CCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC-----cchhhhhcc------ccCCEEeccCCcc
Q 017525            8 LVES-P--VCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-----PLLFEISKV------VSLQHLDLSHSRI   72 (370)
Q Consensus         8 l~~~-~--~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l------~~L~~L~l~~~~l   72 (370)
                      +|.. .  ++++|+.|++++|.+. .+|.. +.++++|++|++++|.     .+|..++.+      ++|++|++++|.+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence            7887 6  8999999999999766 56655 8999999999999996     478888776      8999999999999


Q ss_pred             cccCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC-ccEE
Q 017525           73 ESLPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH-LSVF  149 (370)
Q Consensus        73 ~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~l  149 (370)
                      +.+|.  .++.+++|++|++++|...+.+| . ++++++|++|++++| .+..+|            ..+..+++ |+.|
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp------------~~l~~l~~~L~~L  382 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIP------------ANFCGFTEQVENL  382 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECC------------TTSEEECTTCCEE
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-cccccc------------HhhhhhcccCcEE
Confidence            99998  89999999999999986555888 3 888889999999888 665333            23444555 5566


Q ss_pred             EEEecchhhhHhhhcCCCCCc-----------------------------cccCcEEecCcCCCCccccccccccCCCcE
Q 017525          150 TITLNNFHAFQRLLGSCMPQY-----------------------------VSTPSLCLSHFNNSKSLGVFSLASLRHLQT  200 (370)
Q Consensus       150 ~l~~~~~~~~~~~~~~~~~~~-----------------------------l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~  200 (370)
                      +++.|.+..++.......+..                             .+|+.+.+.++.-. ......+..+++|++
T Consensus       383 ~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~  461 (636)
T 4eco_A          383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSS  461 (636)
T ss_dssp             ECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSE
T ss_pred             EccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCE
Confidence            665555443332111111101                             02444444443322 111112344667777


Q ss_pred             EEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc--CCCCccEEeeccCcchHHhhhccccCCCc
Q 017525          201 LQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF--LAPNLKRVEIDNCQDMKEIIDSEKFGEVP  277 (370)
Q Consensus       201 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  277 (370)
                      |++++|.++.++...+.....  ....+++|++|++++|+++.++ .+.  .+++|+.|+|++|.... +          
T Consensus       462 L~Ls~N~l~~i~~~~~~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-i----------  528 (636)
T 4eco_A          462 INLMGNMLTEIPKNSLKDENE--NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-F----------  528 (636)
T ss_dssp             EECCSSCCSBCCSSSSEETTE--ECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-C----------
T ss_pred             EECCCCCCCCcCHHHhccccc--cccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-c----------
Confidence            777777777655443210000  0012348889999888777765 344  78889999998887543 2          


Q ss_pred             ccccCCccccccccccccccc------cccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhhh
Q 017525          278 AEVMANLIPFARLERLILEEL------KNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNE  351 (370)
Q Consensus       278 ~~~~~~~~~~p~L~~L~l~~~------~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~  351 (370)
                         +..+..+++|+.|+++++      .-...++.....+++|++|++++|. ++.+|....   ..+..+..+.+-+..
T Consensus       529 ---p~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~---~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          529 ---PTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT---PNISVLDIKDNPNIS  601 (636)
T ss_dssp             ---CCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---TTCCEEECCSCTTCE
T ss_pred             ---ChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh---CcCCEEECcCCCCcc
Confidence               346778999999999653      3345566666779999999999985 588887643   466666665554433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=1.5e-24  Score=217.23  Aligned_cols=305  Identities=10%  Similarity=0.096  Sum_probs=208.4

Q ss_pred             ccCC-C--CCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC-----cchhhhhccc-------cCCEEeccCCc
Q 017525            8 LVES-P--VCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN-----PLLFEISKVV-------SLQHLDLSHSR   71 (370)
Q Consensus         8 l~~~-~--~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~-------~L~~L~l~~~~   71 (370)
                      +|.. .  ++++|+.|++++|.+. .+|.. +.++++|++|++++|.     .+|..++.++       +|++|++++|.
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc
Confidence            7887 5  8999999999999765 56655 8999999999999996     4787777776       99999999999


Q ss_pred             ccccCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC-ccE
Q 017525           72 IESLPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH-LSV  148 (370)
Q Consensus        72 l~~lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~  148 (370)
                      ++.+|.  .++.+++|+.|++++|. +..+| . ++++++|+.|++++| .+..+|            ..+..+++ |+.
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L~~L~~L~Ls~N-~l~~lp------------~~l~~l~~~L~~  623 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTNVKLTDLKLDYN-QIEEIP------------EDFCAFTDQVEG  623 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTTSEESEEECCSS-CCSCCC------------TTSCEECTTCCE
T ss_pred             CCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCCCcceEEECcCC-ccccch------------HHHhhccccCCE
Confidence            999998  89999999999999994 55888 3 899999999999999 666433            33555555 666


Q ss_pred             EEEEecchhhhHhhhcCCCC---------------------------CccccCcEEecCcCCCCccccccccccCCCcEE
Q 017525          149 FTITLNNFHAFQRLLGSCMP---------------------------QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTL  201 (370)
Q Consensus       149 l~l~~~~~~~~~~~~~~~~~---------------------------~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L  201 (370)
                      |+++.|.+..++........                           ...+|+.|.+.++.-. ......+..+++|+.|
T Consensus       624 L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L  702 (876)
T 4ecn_A          624 LGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTI  702 (876)
T ss_dssp             EECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEE
T ss_pred             EECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEE
Confidence            66666655444322111110                           1012344444433222 1111123356777777


Q ss_pred             EEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc--CCCCccEEeeccCcchHHhhhccccCCCcc
Q 017525          202 QLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF--LAPNLKRVEIDNCQDMKEIIDSEKFGEVPA  278 (370)
Q Consensus       202 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~--~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~  278 (370)
                      ++++|.++.++...+.....  ....+++|++|+|++|+++.++ .+.  .+++|+.|+|++|....             
T Consensus       703 ~Ls~N~L~~ip~~~~~~~~~--~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-------------  767 (876)
T 4ecn_A          703 ILSNNLMTSIPENSLKPKDG--NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-------------  767 (876)
T ss_dssp             ECCSCCCSCCCTTSSSCTTS--CCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-------------
T ss_pred             ECCCCcCCccChHHhccccc--cccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-------------
Confidence            77777777665443321000  0023458888899888777765 344  78889999998886433             


Q ss_pred             cccCCcccccccccccccccc------ccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhh
Q 017525          279 EVMANLIPFARLERLILEELK------NLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWN  350 (370)
Q Consensus       279 ~~~~~~~~~p~L~~L~l~~~~------~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~  350 (370)
                       ++..+..+++|+.|+++++.      -...++.....+++|+.|++++|. ++.+|....   ..+..+..+.+-+.
T Consensus       768 -lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l~---~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          768 -FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT---PQLYILDIADNPNI  840 (876)
T ss_dssp             -CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC---SSSCEEECCSCTTC
T ss_pred             -cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhhc---CCCCEEECCCCCCC
Confidence             23467788999999997632      234555566678999999999885 588887643   35666665444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.5e-24  Score=211.62  Aligned_cols=279  Identities=17%  Similarity=0.163  Sum_probs=192.2

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccE
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKC   87 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~   87 (370)
                      ..+++++.++++++.++.+|+.++..+++|++|++++|.   ..|..++.+++|++|++++|.++.+|. .++.+++|++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            457899999999999999999989999999999999998   445588999999999999999987776 4689999999


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCC
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCM  167 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~  167 (370)
                      |++++| .+..+|..+++++++|++|++++| .+..+           .+..+..+++|+.|++++|.+..++ +.... 
T Consensus       128 L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~-----------~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~-  192 (597)
T 3oja_B          128 LVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI-----------EDDTFQATTSLQNLQLSSNRLTHVD-LSLIP-  192 (597)
T ss_dssp             EECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC-----------CTTTTTTCTTCCEEECTTSCCSBCC-GGGCT-
T ss_pred             EEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCC-----------ChhhhhcCCcCcEEECcCCCCCCcC-hhhhh-
Confidence            999999 677888776899999999999999 77632           2445778889999999988766543 12222 


Q ss_pred             CCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCC--------c-c-ccccccccccCcEEEEe
Q 017525          168 PQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGE--------V-K-RVLEISGFHSLKNVYIS  237 (370)
Q Consensus       168 ~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~--------~-~-~~~~~~~~~~L~~L~l~  237 (370)
                          .+..+.+..+.-      ..+...++|+.|++++|.+..++......        + . .......+++|++|+++
T Consensus       193 ----~L~~L~l~~n~l------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls  262 (597)
T 3oja_B          193 ----SLFHANVSYNLL------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLS  262 (597)
T ss_dssp             ----TCSEEECCSSCC------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             ----hhhhhhcccCcc------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECC
Confidence                244454443321      12223334455555444444332111000        0 0 00001456667777777


Q ss_pred             ccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcc
Q 017525          238 RSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLK  315 (370)
Q Consensus       238 ~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~  315 (370)
                      +|.++++  ..++.+++|+.|+|++|....              ++.....+|+|+.|++++| .+..++.....+++|+
T Consensus       263 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~  327 (597)
T 3oja_B          263 YNELEKIMYHPFVKMQRLERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLE  327 (597)
T ss_dssp             SSCCCEEESGGGTTCSSCCEEECTTSCCCE--------------EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCS
T ss_pred             CCccCCCCHHHhcCccCCCEEECCCCCCCC--------------CCcccccCCCCcEEECCCC-CCCccCcccccCCCCC
Confidence            7666553  345566777777777665322              2234566888888888887 5666666666788888


Q ss_pred             eEeecCCCCCCCCCCC
Q 017525          316 EMSVDRCPLLKKLPLD  331 (370)
Q Consensus       316 ~L~l~~c~~L~~l~~~  331 (370)
                      .|++++|. ++.+|++
T Consensus       328 ~L~L~~N~-l~~~~~~  342 (597)
T 3oja_B          328 NLYLDHNS-IVTLKLS  342 (597)
T ss_dssp             EEECCSSC-CCCCCCC
T ss_pred             EEECCCCC-CCCcChh
Confidence            88888874 6666644

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.92  E-value=1.1e-24  Score=197.20  Aligned_cols=96  Identities=21%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~   91 (370)
                      +++.++++++.++.+|..+   .++|++|++++|.  .+ +..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3555555555555554431   2445555555554  22 33445555555555555555433 3344555555555555


Q ss_pred             CcccccccCcccccCCCCCcEEEcccc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +| .+..+|.. +.  ++|++|++++|
T Consensus       111 ~n-~l~~l~~~-~~--~~L~~L~l~~n  133 (332)
T 2ft3_A          111 KN-HLVEIPPN-LP--SSLVELRIHDN  133 (332)
T ss_dssp             SS-CCCSCCSS-CC--TTCCEEECCSS
T ss_pred             CC-cCCccCcc-cc--ccCCEEECCCC
Confidence            54 33344433 11  45555555555

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=7.9e-25  Score=219.35  Aligned_cols=235  Identities=13%  Similarity=0.162  Sum_probs=163.0

Q ss_pred             CcccccccCC-CCCCCCCEEecCCCcCCC------------------CChHHHh--cCCCCcEEEccCCC---cchhhhh
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSNIFHR------------------VNSDFFQ--SMASLRVLKWSYSN---PLLFEIS   57 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~------------------~~~~~~~--~l~~L~~L~l~~~~---~~~~~~~   57 (370)
                      +|.++.+|.. .++++|+.|++++|.++.                  +|.. ++  ++++|++|++++|.   .+|..++
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~  512 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLY  512 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHh
Confidence            4677778887 899999999999999988                  8887 45  99999999999997   8899999


Q ss_pred             ccccCCEEeccCCc-cc--ccCcccccCC-------cccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCccccc
Q 017525           58 KVVSLQHLDLSHSR-IE--SLPIEFKCLV-------NLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARD  126 (370)
Q Consensus        58 ~l~~L~~L~l~~~~-l~--~lp~~~~~l~-------~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~  126 (370)
                      ++++|++|++++|. ++  .+|..++.++       +|+.|++++| .+..+|. ..++++++|++|++++| .+..   
T Consensus       513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~---  587 (876)
T 4ecn_A          513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHN-KVRH---  587 (876)
T ss_dssp             GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTS-CCCB---
T ss_pred             CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCC-Cccc---
Confidence            99999999999998 87  4887666665       9999999999 4558887 23999999999999999 6652   


Q ss_pred             ccccCCcchhhhhcccCCCccEEEEEecchhhhHhh-hcCCCCCccccCcEEecCcCCCCcccccccccc--CCCcEEEE
Q 017525          127 SILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL--RHLQTLQL  203 (370)
Q Consensus       127 ~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l--~~L~~L~l  203 (370)
                               .+ .+..+++|+.|+++.|.+..++.. .....    .|+.|.+.++.-....  ..+..+  ++|+.|++
T Consensus       588 ---------lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~----~L~~L~Ls~N~L~~lp--~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          588 ---------LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTD----QVEGLGFSHNKLKYIP--NIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             ---------CC-CCCTTSEESEEECCSSCCSCCCTTSCEECT----TCCEEECCSSCCCSCC--SCCCTTCSSCEEEEEC
T ss_pred             ---------ch-hhcCCCcceEEECcCCccccchHHHhhccc----cCCEEECcCCCCCcCc--hhhhccccCCCCEEEC
Confidence                     23 678889999999999987755432 22221    2677777766533211  223333  34778888


Q ss_pred             ecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCc
Q 017525          204 TYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       204 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~  262 (370)
                      ++|.+......+...    +.....++|++|++++|+++.++.  +..+++|+.|+|++|.
T Consensus       652 s~N~l~g~ip~l~~~----l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~  708 (876)
T 4ecn_A          652 SYNKIGSEGRNISCS----MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL  708 (876)
T ss_dssp             CSSCTTTTSSSCSSC----TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred             cCCcCCCccccchhh----hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence            777765432211100    000122355555555554444432  1244555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.92  E-value=1.4e-23  Score=203.36  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=96.3

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      +|.++.+|... .++|++|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.+|..
T Consensus        40 ~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  118 (562)
T 3a79_B           40 NRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC  118 (562)
T ss_dssp             TSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred             CCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc
Confidence            46788888752 3899999999999998887668999999999999998   4477789999999999999999988877


Q ss_pred             cccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCc
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALP  122 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~  122 (370)
                        .+++|++|++++| .+..++. ..++++++|++|++++| .+.
T Consensus       119 --~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n-~l~  159 (562)
T 3a79_B          119 --PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAA-KFR  159 (562)
T ss_dssp             --CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECS-BCC
T ss_pred             --ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCC-ccc
Confidence              8999999999998 4555442 34889999999999888 554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=2.7e-24  Score=207.83  Aligned_cols=107  Identities=24%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccc--cCcccccCCccc
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLK   86 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~   86 (370)
                      .++++|++|++++|.++.+++..+.++++|++|++++|.  . .+..++++++|++|++++|.++.  .|..++.+++|+
T Consensus        47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~  126 (549)
T 2z81_A           47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ  126 (549)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCC
T ss_pred             hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCcc
Confidence            344444444444444444443334444455555555444  2 22224444555555555554442  233444455555


Q ss_pred             EEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           87 CLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +|++++|..++.++...+.++++|++|++++|
T Consensus       127 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n  158 (549)
T 2z81_A          127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKAL  158 (549)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EEECCCCccccccCHhhhhcccccCeeeccCC
Confidence            55555443344444333445555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.92  E-value=4.2e-25  Score=216.77  Aligned_cols=239  Identities=13%  Similarity=0.182  Sum_probs=170.5

Q ss_pred             CcccccccCC-CCCCCCCEEecCCCcCCC------------------CChHHHh--cCCCCcEEEccCCC---cchhhhh
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSNIFHR------------------VNSDFFQ--SMASLRVLKWSYSN---PLLFEIS   57 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~~i~~------------------~~~~~~~--~l~~L~~L~l~~~~---~~~~~~~   57 (370)
                      +|.++.+|.. .++++|++|++++|.++.                  +|.. +.  ++++|++|++++|.   .+|..++
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHh
Confidence            4678888887 899999999999999988                  8887 67  99999999999998   7899999


Q ss_pred             ccccCCEEeccCCc-cc--ccCcccccC------CcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccc
Q 017525           58 KVVSLQHLDLSHSR-IE--SLPIEFKCL------VNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDS  127 (370)
Q Consensus        58 ~l~~L~~L~l~~~~-l~--~lp~~~~~l------~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~  127 (370)
                      ++++|++|++++|+ ++  .+|..++.+      ++|++|++++| .+..+|. ..++++++|++|++++| .+..    
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g----  344 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYN-QLEG----  344 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSC-CCEE----
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCC-cCcc----
Confidence            99999999999998 87  588888776      99999999999 4558887 23999999999999999 6651    


Q ss_pred             cccCCcchhhhhcccCCCccEEEEEecchhhhHhh-hcCCCCCccccCcEEecCcCCCCccccccccc--cCCCcEEEEe
Q 017525          128 ILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLAS--LRHLQTLQLT  204 (370)
Q Consensus       128 ~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~--l~~L~~L~l~  204 (370)
                             ..+ .+..+++|+.|+++.|.+..++.. .....    .|+.+.+.++.-....  ..+..  +++|++|+++
T Consensus       345 -------~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~----~L~~L~Ls~N~l~~lp--~~~~~~~l~~L~~L~Ls  410 (636)
T 4eco_A          345 -------KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTE----QVENLSFAHNKLKYIP--NIFDAKSVSVMSAIDFS  410 (636)
T ss_dssp             -------ECC-CCEEEEEESEEECCSSEEEECCTTSEEECT----TCCEEECCSSCCSSCC--SCCCTTCSSCEEEEECC
T ss_pred             -------chh-hhCCCCCCCEEECCCCccccccHhhhhhcc----cCcEEEccCCcCcccc--hhhhhcccCccCEEECc
Confidence                   223 677889999999999987755432 22221    2677777766533221  23333  3478888888


Q ss_pred             cCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcc
Q 017525          205 YNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       205 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~  263 (370)
                      +|.+.......+++...  ..-.+++|++|++++|+++.++.  +..+++|+.|++++|..
T Consensus       411 ~N~l~~~~p~~l~~~~~--~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l  469 (636)
T 4eco_A          411 YNEIGSVDGKNFDPLDP--TPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML  469 (636)
T ss_dssp             SSCTTTTTTCSSCTTCS--SCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred             CCcCCCcchhhhccccc--ccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence            88776543332220000  00134466666666665555442  23456666666666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=7e-24  Score=200.78  Aligned_cols=233  Identities=17%  Similarity=0.230  Sum_probs=126.3

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +|.++.++...++++|+.|++++|.+..+++  +.++++|++|++++|.  .++. +..+++|++|++++|.++.++. +
T Consensus        77 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~  152 (466)
T 1o6v_A           77 NNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-L  152 (466)
T ss_dssp             SSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-G
T ss_pred             CCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-h
Confidence            4677777777889999999999999888876  7899999999999998  4443 8889999999999998876653 4


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccc---------cCCcchhhhhcccCCCccEEE
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSIL---------FGDCRVLVEELLGLEHLSVFT  150 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------~~~~~~~~~~l~~l~~L~~l~  150 (370)
                      +.+++|+.|+++++  +...+.  +.++++|++|++++| .+..++.-..         .+..-.....+..+++|+.++
T Consensus       153 ~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  227 (466)
T 1o6v_A          153 SGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELS  227 (466)
T ss_dssp             TTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred             ccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEE
Confidence            55555555555421  222211  444555555555544 3321110000         000000001133345555555


Q ss_pred             EEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCcccccccccccc
Q 017525          151 ITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHS  230 (370)
Q Consensus       151 l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~  230 (370)
                      ++++....++.+....     +|+.+++.++.-....   .+..+++|+.|++++|.+..++. +          ..+++
T Consensus       228 l~~n~l~~~~~l~~l~-----~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~----------~~l~~  288 (466)
T 1o6v_A          228 LNGNQLKDIGTLASLT-----NLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISP-L----------AGLTA  288 (466)
T ss_dssp             CCSSCCCCCGGGGGCT-----TCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCCGG-G----------TTCTT
T ss_pred             CCCCCcccchhhhcCC-----CCCEEECCCCccccch---hhhcCCCCCEEECCCCccCcccc-c----------cCCCc
Confidence            5555444333332222     2444444443322111   24445555555555555544322 1          33455


Q ss_pred             CcEEEEecccccccCcccCCCCccEEeeccCc
Q 017525          231 LKNVYISRSKFRHATWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       231 L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~  262 (370)
                      |++|++++|++++++.+..+++|+.|++++|.
T Consensus       289 L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          289 LTNLELNENQLEDISPISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred             cCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence            55555555555544444455555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=4.9e-24  Score=200.81  Aligned_cols=255  Identities=15%  Similarity=0.116  Sum_probs=128.9

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      .++++|++|++++|.++.+| . +..+++|++|++++|.  .+|  ++.+++|++|++++|.++.++  ++.+++|++|+
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN  112 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred             hHcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence            44666666666666666654 2 5666666666666666  333  566666666666666666553  55666666666


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCccccccccc-------CCc-chhhhhcccCCCccEEEEEecchhhhHh
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILF-------GDC-RVLVEELLGLEHLSVFTITLNNFHAFQR  161 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------~~~-~~~~~~l~~l~~L~~l~l~~~~~~~~~~  161 (370)
                      +++| .+..++   ++++++|++|++++| .+..++..-..       ... ......+..+++|+.++++.+.+..++ 
T Consensus       113 L~~N-~l~~l~---~~~l~~L~~L~l~~N-~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-  186 (457)
T 3bz5_A          113 CDTN-KLTKLD---VSQNPLLTYLNCARN-TLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-  186 (457)
T ss_dssp             CCSS-CCSCCC---CTTCTTCCEEECTTS-CCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred             CCCC-cCCeec---CCCCCcCCEEECCCC-ccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence            6666 333332   556666666666666 44422100000       000 000002344555666666655554433 


Q ss_pred             hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccc
Q 017525          162 LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKF  241 (370)
Q Consensus       162 ~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  241 (370)
                      +.   .+.  .++.+.+.++.-. ..   .+..+++|+.|++++|.++.++  +          ..+++|++|++++|++
T Consensus       187 l~---~l~--~L~~L~l~~N~l~-~~---~l~~l~~L~~L~Ls~N~l~~ip--~----------~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          187 VS---QNK--LLNRLNCDTNNIT-KL---DLNQNIQLTFLDCSSNKLTEID--V----------TPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             CT---TCT--TCCEEECCSSCCS-CC---CCTTCTTCSEEECCSSCCSCCC--C----------TTCTTCSEEECCSSCC
T ss_pred             cc---cCC--CCCEEECcCCcCC-ee---ccccCCCCCEEECcCCcccccC--c----------cccCCCCEEEeeCCcC
Confidence            11   111  2444554443221 11   2555566666666666666543  1          4456666666666666


Q ss_pred             cccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccccc
Q 017525          242 RHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVH  305 (370)
Q Consensus       242 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~  305 (370)
                      ++++ .+.+++|+.|+++++.. +.+.-..+  .....+  ....+++|+.|++++|..++.++
T Consensus       246 ~~~~-~~~l~~L~~L~l~~n~L-~~L~l~~n--~~~~~~--~~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          246 TELD-VSTLSKLTTLHCIQTDL-LEIDLTHN--TQLIYF--QAEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             SCCC-CTTCTTCCEEECTTCCC-SCCCCTTC--TTCCEE--ECTTCTTCCCCCCTTCTTCCEEE
T ss_pred             CCcC-HHHCCCCCEEeccCCCC-CEEECCCC--ccCCcc--cccccccCCEEECCCCcccceec
Confidence            5554 34455555444443321 11100000  000001  23466788888888876655554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=9.8e-24  Score=190.81  Aligned_cols=230  Identities=18%  Similarity=0.225  Sum_probs=135.1

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|.   ..|..+..+++|++|++++|.++.+|..+
T Consensus        41 ~~l~~lp~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  119 (330)
T 1xku_A           41 LGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM  119 (330)
T ss_dssp             SCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred             CCccccCcc-CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence            345555543 23577777777777777766556777777777777776   33666777777777777777777776654


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      .  ++|++|++++| .+..++...+.++++|++|++++| .+...+         .....+..+++|+.++++.+....+
T Consensus       120 ~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          120 P--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSG---------IENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             C--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGG---------BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             c--ccccEEECCCC-cccccCHhHhcCCccccEEECCCC-cCCccC---------cChhhccCCCCcCEEECCCCccccC
Confidence            3  67777777777 455555545677777777777777 553211         2234556667777777776665443


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +....     . .|+.+.+.++. ++......+..+++|++|++++|.++.++...+         ..+++|++|++++|
T Consensus       187 ~~~~~-----~-~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~N  250 (330)
T 1xku_A          187 PQGLP-----P-SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL---------ANTPHLRELHLNNN  250 (330)
T ss_dssp             CSSCC-----T-TCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTG---------GGSTTCCEEECCSS
T ss_pred             Ccccc-----c-cCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhc---------cCCCCCCEEECCCC
Confidence            22111     1 35555555443 222212345555566666666655555433222         34555666666666


Q ss_pred             cccccC-cccCCCCccEEeeccCc
Q 017525          240 KFRHAT-WLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       240 ~l~~~~-~l~~l~~L~~L~L~~~~  262 (370)
                      +++.++ ++..+++|+.|++++|.
T Consensus       251 ~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          251 KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cCccCChhhccCCCcCEEECCCCc
Confidence            555443 34555566666666554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=6.5e-24  Score=206.04  Aligned_cols=120  Identities=27%  Similarity=0.246  Sum_probs=92.8

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.++.+++.  .++++|++|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.++
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  116 (570)
T 2z63_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (570)
T ss_dssp             SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCC
Confidence            4667777654  678888888888888887777667888888888888887   33467888888888888888888776


Q ss_pred             c-ccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcc
Q 017525           77 I-EFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQ  123 (370)
Q Consensus        77 ~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~  123 (370)
                      . .++.+++|++|++++|.... .+|.. ++++++|++|++++| .+..
T Consensus       117 ~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n-~l~~  163 (570)
T 2z63_A          117 NFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSN-KIQS  163 (570)
T ss_dssp             TCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTS-CCCE
T ss_pred             CccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCC-ccce
Confidence            5 57888889999998884333 35655 888899999998888 5543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=1e-23  Score=206.27  Aligned_cols=294  Identities=16%  Similarity=0.127  Sum_probs=192.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc-Cc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL-PI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l-p~   77 (370)
                      ++.++.+|.. -.+++++|++++|.++.+++..+.++++|++|++++|.   ..|..+.++++|++|++++|.++.+ |.
T Consensus        20 ~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~   98 (606)
T 3vq2_A           20 DQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG   98 (606)
T ss_dssp             TSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT
T ss_pred             CCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh
Confidence            4568888875 33899999999999998888669999999999999998   4467889999999999999999877 67


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      .++.+++|++|++++| .+..++...++++++|++|++++| .+..+          ..+..+..+++|+.|+++++...
T Consensus        99 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~----------~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A           99 SFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHN-FIHSC----------KLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             SSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSS-CCCCC----------CCCGGGGTCTTCCEEECCSSCCC
T ss_pred             hcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCC-cccce----------echHhHhhcCCCCEEEccCCcce
Confidence            8999999999999999 556666445999999999999999 66521          12345566667777776665433


Q ss_pred             hh-----HhhhcCC-------------------CCCccccCcEEecCcCC------------------------------
Q 017525          158 AF-----QRLLGSC-------------------MPQYVSTPSLCLSHFNN------------------------------  183 (370)
Q Consensus       158 ~~-----~~~~~~~-------------------~~~~l~L~~l~l~~~~~------------------------------  183 (370)
                      ..     ..+....                   .+....++.+.+.++..                              
T Consensus       167 ~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  246 (606)
T 3vq2_A          167 TITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN  246 (606)
T ss_dssp             EECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred             ecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence            21     1111100                   00111234444433211                              


Q ss_pred             ---------------------------CCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525          184 ---------------------------SKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI  236 (370)
Q Consensus       184 ---------------------------~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (370)
                                                 .... ...+..+++|+.|+++++.+..++ .+          ..+++|++|++
T Consensus       247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~l~-~l----------~~~~~L~~L~l  314 (606)
T 3vq2_A          247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDD-IVKFHCLANVSAMSLAGVSIKYLE-DV----------PKHFKWQSLSI  314 (606)
T ss_dssp             CSCCCGGGGTTGGGSEEEEEEECCCTTCCGG-GGSCGGGTTCSEEEEESCCCCCCC-CC----------CTTCCCSEEEE
T ss_pred             ccccChHHhhhhhhccHhheecccccccccc-ccccccCCCCCEEEecCccchhhh-hc----------cccccCCEEEc
Confidence                                       1111 122556778888888888777665 22          45677777777


Q ss_pred             ecccccccCcccCCCCccEEeeccCcchHHhhhccccCCC----------cc--cccCCccccccccccccccccccccc
Q 017525          237 SRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEV----------PA--EVMANLIPFARLERLILEELKNLKTV  304 (370)
Q Consensus       237 ~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~p~L~~L~l~~~~~l~~i  304 (370)
                      ++|+++.++.+ .+++|+.|++++|..+..... .....+          ..  ..+..+..+++|+.|++++| .+..+
T Consensus       315 ~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~  391 (606)
T 3vq2_A          315 IRCQLKQFPTL-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIM  391 (606)
T ss_dssp             ESCCCSSCCCC-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEE
T ss_pred             ccccCcccccC-CCCccceeeccCCcCccchhh-ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccc
Confidence            77766666655 666677777766643322100 000000          00  01223456677777777766 35555


Q ss_pred             cCCCccCCCcceEeecCCC
Q 017525          305 HSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       305 ~~~~~~~~~L~~L~l~~c~  323 (370)
                      +.....+++|+.|++.+|.
T Consensus       392 ~~~~~~l~~L~~L~l~~n~  410 (606)
T 3vq2_A          392 SANFMGLEELQHLDFQHST  410 (606)
T ss_dssp             CCCCTTCTTCCEEECTTSE
T ss_pred             hhhccCCCCCCeeECCCCc
Confidence            5555567777888777764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.91  E-value=1.1e-23  Score=205.86  Aligned_cols=274  Identities=15%  Similarity=0.174  Sum_probs=195.6

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~   92 (370)
                      +|+.|++++|.++.+++..+..+++|++|++++|.  .+|..+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence            67888888888888888778889999999999988  7888888899999999999988765 44788899999999998


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhcCCCCCc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLGSCMPQY  170 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~  170 (370)
                      |.....++...+.++++|++|++++| .+....         .....+..+++|+.++++.+......  .+....    
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~----  400 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHD-DIETSD---------CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP----  400 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEE---------ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT----
T ss_pred             CCcccccchhhhhccCcCCEEECCCC-cccccc---------CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc----
Confidence            86666777666888999999999988 665322         22455777888888888888754432  122222    


Q ss_pred             cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc-----C
Q 017525          171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA-----T  245 (370)
Q Consensus       171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-----~  245 (370)
                       .|+.+.+.++.-........+..+++|++|++++|.+.......+         ..+++|++|++++|++++.     .
T Consensus       401 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~  470 (606)
T 3t6q_A          401 -QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF---------DGLPALQHLNLQGNHFPKGNIQKTN  470 (606)
T ss_dssp             -TCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT---------TTCTTCCEEECTTCBCGGGEECSSC
T ss_pred             -cCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH---------hCCCCCCEEECCCCCCCccccccch
Confidence             367777766543222212246778888888888888876654443         4578888888888876551     3


Q ss_pred             cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccC-CCccCCCcceEeecCCCC
Q 017525          246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHS-KALPFPHLKEMSVDRCPL  324 (370)
Q Consensus       246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~-~~~~~~~L~~L~l~~c~~  324 (370)
                      .+..+++|+.|++++|.... +            .+..+..+++|+.|+++++ .++.+.. ....++.| .|+++++ +
T Consensus       471 ~~~~l~~L~~L~Ls~n~l~~-~------------~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~  534 (606)
T 3t6q_A          471 SLQTLGRLEILVLSFCDLSS-I------------DQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-H  534 (606)
T ss_dssp             GGGGCTTCCEEECTTSCCCE-E------------CTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-C
T ss_pred             hhccCCCccEEECCCCccCc-c------------ChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCC-c
Confidence            46678888888888886432 2            1246677888888888887 4544433 34456777 7887776 3


Q ss_pred             CCCCC
Q 017525          325 LKKLP  329 (370)
Q Consensus       325 L~~l~  329 (370)
                      ++.++
T Consensus       535 l~~~~  539 (606)
T 3t6q_A          535 ISIIL  539 (606)
T ss_dssp             CCCCC
T ss_pred             ccccC
Confidence            44443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=6.6e-24  Score=191.53  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=52.7

Q ss_pred             CCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525           38 MASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM  115 (370)
Q Consensus        38 l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  115 (370)
                      ..++++|+++++.  .+|..++.+++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++++++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEEEC
Confidence            3566666666666  5666666677777777777766666666667777777777776 34456654 667777777777


Q ss_pred             ccc
Q 017525          116 YEC  118 (370)
Q Consensus       116 ~~~  118 (370)
                      ++|
T Consensus       158 ~~n  160 (328)
T 4fcg_A          158 RAC  160 (328)
T ss_dssp             EEE
T ss_pred             CCC
Confidence            765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=2.2e-24  Score=193.55  Aligned_cols=249  Identities=18%  Similarity=0.189  Sum_probs=177.9

Q ss_pred             CCCCEEecCCCcCCC---CChHHHhcCCCCcEEEccC-CC---cchhhhhccccCCEEeccCCccc-ccCcccccCCccc
Q 017525           15 PRLRTLFLSSNIFHR---VNSDFFQSMASLRVLKWSY-SN---PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLK   86 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~---~~~~~~~~l~~L~~L~l~~-~~---~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~   86 (370)
                      .+++.|+++++.++.   +|.. +.++++|++|++++ +.   .+|..++++++|++|++++|.++ .+|..++.+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            689999999998884   6665 89999999999995 66   78889999999999999999997 7888899999999


Q ss_pred             EEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-CccEEEEEecchhhhHhhhcC
Q 017525           87 CLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HLSVFTITLNNFHAFQRLLGS  165 (370)
Q Consensus        87 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~~~~~~~~~~  165 (370)
                      +|++++|...+.+|.. +.++++|++|++++| .+..           ..+..+..++ +|+.++++.+.+....     
T Consensus       129 ~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N-~l~~-----------~~p~~l~~l~~~L~~L~L~~N~l~~~~-----  190 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISG-----------AIPDSYGSFSKLFTSMTISRNRLTGKI-----  190 (313)
T ss_dssp             EEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEE-----------ECCGGGGCCCTTCCEEECCSSEEEEEC-----
T ss_pred             EEeCCCCccCCcCChH-HhcCCCCCeEECcCC-cccC-----------cCCHHHhhhhhcCcEEECcCCeeeccC-----
Confidence            9999999655577775 899999999999999 6651           2344566666 8888888877543110     


Q ss_pred             CCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc-c
Q 017525          166 CMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH-A  244 (370)
Q Consensus       166 ~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~  244 (370)
                                             ...+..++ |++|++++|.++......+         ..+++|++|++++|+++. +
T Consensus       191 -----------------------~~~~~~l~-L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~  237 (313)
T 1ogq_A          191 -----------------------PPTFANLN-LAFVDLSRNMLEGDASVLF---------GSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             -----------------------CGGGGGCC-CSEEECCSSEEEECCGGGC---------CTTSCCSEEECCSSEECCBG
T ss_pred             -----------------------ChHHhCCc-ccEEECcCCcccCcCCHHH---------hcCCCCCEEECCCCceeeec
Confidence                                   01233444 7777777777665443332         456777777777776654 3


Q ss_pred             CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccc-cccCCCccCCCcceEeecCCC
Q 017525          245 TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLK-TVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       245 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      +.+..+++|++|++++|.....+             +..+..+++|+.|+++++. +. .++. ...+++|+.+++.+++
T Consensus       238 ~~~~~l~~L~~L~Ls~N~l~~~~-------------p~~l~~l~~L~~L~Ls~N~-l~~~ip~-~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          238 GKVGLSKNLNGLDLRNNRIYGTL-------------PQGLTQLKFLHSLNVSFNN-LCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECC-------------CGGGGGCTTCCEEECCSSE-EEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CcccccCCCCEEECcCCcccCcC-------------ChHHhcCcCCCEEECcCCc-ccccCCC-CccccccChHHhcCCC
Confidence            44556777777777777643222             2356667777777777763 43 3333 3556777777777766


Q ss_pred             CCCCCCC
Q 017525          324 LLKKLPL  330 (370)
Q Consensus       324 ~L~~l~~  330 (370)
                      .+...|.
T Consensus       303 ~lc~~p~  309 (313)
T 1ogq_A          303 CLCGSPL  309 (313)
T ss_dssp             EEESTTS
T ss_pred             CccCCCC
Confidence            6655443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=1.1e-22  Score=201.52  Aligned_cols=235  Identities=18%  Similarity=0.186  Sum_probs=157.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      +++++.+|... .+++++|++++|.++.+++..+.++++|++|++++|.   ..|..++++++|++|++++|.++.+|. 
T Consensus        13 ~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~   91 (680)
T 1ziw_A           13 HLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDK   91 (680)
T ss_dssp             SSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChh
Confidence            45678888752 3789999999999999988778999999999999998   557788999999999999999998887 


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      .++.+++|++|++++| .+..++...++++++|++|++++| .+..           ..+..+..+++|+.|+++.+.+.
T Consensus        92 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~-----------~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A           92 TFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSS-----------TKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             TTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS-CCSC-----------CCCCSSSCCTTCCEEECCSSCCC
T ss_pred             hhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC-cccc-----------cCchhhcccccCCEEEccCCccc
Confidence            5889999999999998 556666555899999999999999 6653           22344667788888888877654


Q ss_pred             hhHhh-hcCCCCCccccCcEEecCcCCCCcccccccccc---------------------------CCCcEEEEecCCcc
Q 017525          158 AFQRL-LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL---------------------------RHLQTLQLTYNDLD  209 (370)
Q Consensus       158 ~~~~~-~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l---------------------------~~L~~L~l~~~~l~  209 (370)
                      ..... .......  .|+.+++.++.-.... ...+..+                           ++|+.|++++|.+.
T Consensus       159 ~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          159 ALKSEELDIFANS--SLKKLELSSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             CBCHHHHGGGTTC--EESEEECTTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             ccCHHHhhccccc--cccEEECCCCcccccC-hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc
Confidence            43221 1111111  3666666554221111 1112111                           44555566555555


Q ss_pred             cceeccCCCcccccccccc--ccCcEEEEeccccccc--CcccCCCCccEEeeccCc
Q 017525          210 EIKIDNGGEVKRVLEISGF--HSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~  262 (370)
                      ......+         ..+  ++|++|++++|+++.+  ..++.+++|+.|++++|.
T Consensus       236 ~~~~~~~---------~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          236 TTSNTTF---------LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             EECTTTT---------GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccChhHh---------hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence            4433222         122  3366666666655543  235556666666666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.8e-23  Score=209.56  Aligned_cols=235  Identities=23%  Similarity=0.214  Sum_probs=138.8

Q ss_pred             cccc-cccCC-CC-CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhh-hhccccCCEEeccCCccc-c
Q 017525            3 NHIE-NLVES-PV-CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFE-ISKVVSLQHLDLSHSRIE-S   74 (370)
Q Consensus         3 n~l~-~l~~~-~~-l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~-~~~l~~L~~L~l~~~~l~-~   74 (370)
                      |.++ .+|.. .. +++|+.|++++|.++...+..+..+++|++|++++|.   .+|.. +..+++|++|++++|.++ .
T Consensus       279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~  358 (768)
T 3rgz_A          279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE  358 (768)
T ss_dssp             SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred             CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence            4444 45554 33 4777788887777763333336777777777777776   45544 677777777777777665 5


Q ss_pred             cCcccccCC-cccEEeccCcccccccCcc-------------------------cccCCCCCcEEEccccCCCccccccc
Q 017525           75 LPIEFKCLV-NLKCLNLEYTYGISRIPPK-------------------------VISNLKILETLRMYECAALPQARDSI  128 (370)
Q Consensus        75 lp~~~~~l~-~L~~L~l~~~~~~~~~~~~-------------------------~~~~l~~L~~L~l~~~~~~~~~~~~~  128 (370)
                      +|..+..++ +|+.|++++|...+.++..                         .+.++++|++|++++| .+..     
T Consensus       359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~-----  432 (768)
T 3rgz_A          359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSG-----  432 (768)
T ss_dssp             CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEES-----
T ss_pred             ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccC-----
Confidence            666555554 5555555555433333332                         1444455555555544 3321     


Q ss_pred             ccCCcchhhhhcccCCCccEEEEEecchhh-hHh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecC
Q 017525          129 LFGDCRVLVEELLGLEHLSVFTITLNNFHA-FQR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYN  206 (370)
Q Consensus       129 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~  206 (370)
                            ..+..+..+++|+.+++..|.... ++. +....     .|+.+.+.++.-.... ...+..+++|++|++++|
T Consensus       433 ------~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-----~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N  500 (768)
T 3rgz_A          433 ------TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-----TLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNN  500 (768)
T ss_dssp             ------CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-----TCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSS
T ss_pred             ------cccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-----CceEEEecCCcccCcC-CHHHhcCCCCCEEEccCC
Confidence                  223445556666666666665442 211 22222     3566666655432221 235667778888888887


Q ss_pred             CcccceeccCCCccccccccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcch
Q 017525          207 DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       207 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~  264 (370)
                      .+......++         ..+++|++|++++|++++ + ..++.+++|+.|++++|...
T Consensus       501 ~l~~~~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          501 RLTGEIPKWI---------GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCCSCCCGGG---------GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             ccCCcCChHH---------hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            7764433322         567888888888887764 3 35777888888888888754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.4e-23  Score=189.99  Aligned_cols=262  Identities=19%  Similarity=0.194  Sum_probs=173.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|+.|++++|.++.++...+.++++|++|++++|.   ..+..+.++++|++|++++|.++.+|..
T Consensus        40 ~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  118 (353)
T 2z80_A           40 SGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS  118 (353)
T ss_dssp             STTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred             CCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence            3456666664 23577777777777777766556777777777777776   3345577777777777777777776664


Q ss_pred             -cccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           79 -FKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       ++.+++|++|++++| .+..++. ..+.++++|++|++++|..+..+           ....+..+++|+.++++.+..
T Consensus       119 ~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-----------~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          119 WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI-----------QRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE-----------CTTTTTTCCEEEEEEEEETTC
T ss_pred             HhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc-----------CHHHccCCCCCCEEECCCCCc
Confidence             667777777777777 4555555 44677777777777776323321           133455666777777766543


Q ss_pred             hhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEE
Q 017525          157 HAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYI  236 (370)
Q Consensus       157 ~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l  236 (370)
                      ...                            ....+..+++|++|++++|.++.++..+.         ..+++|++|++
T Consensus       187 ~~~----------------------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---------~~~~~L~~L~L  229 (353)
T 2z80_A          187 QSY----------------------------EPKSLKSIQNVSHLILHMKQHILLLEIFV---------DVTSSVECLEL  229 (353)
T ss_dssp             CEE----------------------------CTTTTTTCSEEEEEEEECSCSTTHHHHHH---------HHTTTEEEEEE
T ss_pred             Ccc----------------------------CHHHHhccccCCeecCCCCccccchhhhh---------hhcccccEEEC
Confidence            211                            11246677889999999888877654332         45788999999


Q ss_pred             ecccccccC-----cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCC-cc
Q 017525          237 SRSKFRHAT-----WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA-LP  310 (370)
Q Consensus       237 ~~~~l~~~~-----~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~-~~  310 (370)
                      ++|++++.+     .......++.++++++........         .++..+..+++|+.|+++++ .++.++... ..
T Consensus       230 ~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~---------~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~  299 (353)
T 2z80_A          230 RDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF---------QVMKLLNQISGLLELEFSRN-QLKSVPDGIFDR  299 (353)
T ss_dssp             ESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH---------HHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             CCCccccccccccccccccchhhccccccccccCcchh---------hhHHHHhcccCCCEEECCCC-CCCccCHHHHhc
Confidence            998776643     123466788888887764332211         02235677889999999988 677777664 56


Q ss_pred             CCCcceEeecCCC
Q 017525          311 FPHLKEMSVDRCP  323 (370)
Q Consensus       311 ~~~L~~L~l~~c~  323 (370)
                      +++|++|++.+++
T Consensus       300 l~~L~~L~L~~N~  312 (353)
T 2z80_A          300 LTSLQKIWLHTNP  312 (353)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEEeeCCC
Confidence            8888888888774

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=3.9e-23  Score=194.65  Aligned_cols=246  Identities=16%  Similarity=0.161  Sum_probs=161.8

Q ss_pred             HhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525           35 FQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET  112 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  112 (370)
                      ++.+++|++|+++++.  .+| .+..+++|++|++++|.++.+|  ++.+++|++|++++| .+..++   ++++++|++
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~  110 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTY  110 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCC-CCceee---cCCCCcCCE
Confidence            7889999999999999  555 7899999999999999999886  889999999999999 455553   789999999


Q ss_pred             EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525          113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL  192 (370)
Q Consensus       113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l  192 (370)
                      |++++| .+..+              .+..+++|+.|+++.+.+..++    ...+.  .|+.+.+.++......   .+
T Consensus       111 L~L~~N-~l~~l--------------~~~~l~~L~~L~l~~N~l~~l~----l~~l~--~L~~L~l~~n~~~~~~---~~  166 (457)
T 3bz5_A          111 LNCDTN-KLTKL--------------DVSQNPLLTYLNCARNTLTEID----VSHNT--QLTELDCHLNKKITKL---DV  166 (457)
T ss_dssp             EECCSS-CCSCC--------------CCTTCTTCCEEECTTSCCSCCC----CTTCT--TCCEEECTTCSCCCCC---CC
T ss_pred             EECCCC-cCCee--------------cCCCCCcCCEEECCCCccceec----cccCC--cCCEEECCCCCccccc---cc
Confidence            999999 77622              2667788888888888766642    22222  3666777666544433   35


Q ss_pred             cccCCCcEEEEecCCcccceeccCCC---------ccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcc
Q 017525          193 ASLRHLQTLQLTYNDLDEIKIDNGGE---------VKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       193 ~~l~~L~~L~l~~~~l~~~~~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~  263 (370)
                      ..+++|+.|++++|.++.++......         ....++...+++|++|++++|++++++ ++.+++|+.|++++|..
T Consensus       167 ~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          167 TPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             TTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC
T ss_pred             ccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcC
Confidence            56666777777776666553110000         000001144566666666666666655 55666667776666653


Q ss_pred             hHHhhhccccCCCcccccCCccccc----------cccccccccccccccccCCCccCCCcceEeecCCCCCCCCCC
Q 017525          264 MKEIIDSEKFGEVPAEVMANLIPFA----------RLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPL  330 (370)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~p----------~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~  330 (370)
                      .. +               ....++          +|+.|++++|..+..++.  ..+++|+.|++++|+.++.+|.
T Consensus       246 ~~-~---------------~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~  304 (457)
T 3bz5_A          246 TE-L---------------DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDC  304 (457)
T ss_dssp             SC-C---------------CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEEC
T ss_pred             CC-c---------------CHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCCEEECCCCcccceecc
Confidence            22 1               112223          456666666655555542  3467777777777655444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=5e-23  Score=198.93  Aligned_cols=142  Identities=25%  Similarity=0.283  Sum_probs=110.8

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|++|++++|.++.+++..+.++++|++|++++|.   ..|..+..+++|++|++++|.++.++..
T Consensus        14 ~~~l~~ip~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           14 SRSFTSIPSG-LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             CCcccccccc-CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence            4678888885 34899999999999998876668999999999999998   4457899999999999999999988775


Q ss_pred             -cccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           79 -FKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       ++.+++|++|++++|.... ..+. .++++++|++|++++|..++.++           ...+..+++|+.|+++.+..
T Consensus        93 ~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~-----------~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A           93 WFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIR-----------RIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             HHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEEC-----------TTTTTTCCEEEEEEEEETTC
T ss_pred             HhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccC-----------HhhhhcccccCeeeccCCcc
Confidence             8999999999999994433 2344 38999999999999993355433           12344455555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=1.1e-22  Score=201.65  Aligned_cols=240  Identities=18%  Similarity=0.198  Sum_probs=164.2

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.++.++..  .++++|++|++++|.++.+++..+.++++|++|++++|.  .+|. .++++++|++|++++|.++.++
T Consensus        34 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  113 (680)
T 1ziw_A           34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIK  113 (680)
T ss_dssp             SSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccC
Confidence            5778888874  789999999999999998877779999999999999998  6665 5899999999999999998877


Q ss_pred             c-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           77 I-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        77 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      . .++.+++|++|++++|.. ...+...++++++|++|++++| .+..++         ...-....+++|+.++++.+.
T Consensus       114 ~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---------~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          114 NNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNN-KIQALK---------SEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCC-SCCCCCSSSCCTTCCEEECCSS-CCCCBC---------HHHHGGGTTCEESEEECTTCC
T ss_pred             hhHccccCCCCEEECCCCcc-cccCchhhcccccCCEEEccCC-cccccC---------HHHhhccccccccEEECCCCc
Confidence            4 689999999999999954 4444444889999999999999 665432         111111233566666666554


Q ss_pred             hhhhHh--hhcCCCCCc----------------------cccCcEEecCcCCCCccccccccccC--CCcEEEEecCCcc
Q 017525          156 FHAFQR--LLGSCMPQY----------------------VSTPSLCLSHFNNSKSLGVFSLASLR--HLQTLQLTYNDLD  209 (370)
Q Consensus       156 ~~~~~~--~~~~~~~~~----------------------l~L~~l~l~~~~~~~~~~~~~l~~l~--~L~~L~l~~~~l~  209 (370)
                      ...+..  +.....+..                      -.++.+.+.++.-.. .....+..++  +|+.|++++|.++
T Consensus       183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-~~~~~~~~l~~~~L~~L~Ls~n~l~  261 (680)
T 1ziw_A          183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLN  261 (680)
T ss_dssp             CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-ECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred             ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-cChhHhhccCcCCCCEEECCCCCcC
Confidence            332211  111110000                      035566665543221 1122344443  4888888888777


Q ss_pred             cceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCc
Q 017525          210 EIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~  262 (370)
                      .++...+         ..+++|++|++++|+++.+  ..+..+++|+.|+++++.
T Consensus       262 ~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          262 VVGNDSF---------AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             EECTTTT---------TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCB
T ss_pred             ccCcccc---------cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchh
Confidence            6654433         4577788888887766554  246667777777776553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=5.4e-23  Score=185.55  Aligned_cols=237  Identities=19%  Similarity=0.239  Sum_probs=152.1

Q ss_pred             cccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhh
Q 017525           59 VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVE  138 (370)
Q Consensus        59 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~  138 (370)
                      ..++++|++++++++.+|..++.+++|++|++++| .+..+|.. ++++++|++|++++| .+..            .+.
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~-~~~l~~L~~L~Ls~n-~l~~------------lp~  144 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDT-MQQFAGLETLTLARN-PLRA------------LPA  144 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSC-GGGGTTCSEEEEESC-CCCC------------CCG
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHH-HhccCCCCEEECCCC-cccc------------CcH
Confidence            36777777777777777777777777777777777 34466664 777777777777777 5553            233


Q ss_pred             hcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCC
Q 017525          139 ELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGE  218 (370)
Q Consensus       139 ~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~  218 (370)
                      .+..+++|+.|++++|.....        ... .+....+          ...+..+++|++|++++|.++.++..+   
T Consensus       145 ~l~~l~~L~~L~L~~n~~~~~--------~p~-~~~~~~~----------~~~~~~l~~L~~L~L~~n~l~~lp~~l---  202 (328)
T 4fcg_A          145 SIASLNRLRELSIRACPELTE--------LPE-PLASTDA----------SGEHQGLVNLQSLRLEWTGIRSLPASI---  202 (328)
T ss_dssp             GGGGCTTCCEEEEEEETTCCC--------CCS-CSEEEC-----------CCCEEESTTCCEEEEEEECCCCCCGGG---
T ss_pred             HHhcCcCCCEEECCCCCCccc--------cCh-hHhhccc----------hhhhccCCCCCEEECcCCCcCcchHhh---
Confidence            466667777777776542110        000 0111000          013555777788888777777655433   


Q ss_pred             ccccccccccccCcEEEEecccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccc
Q 017525          219 VKRVLEISGFHSLKNVYISRSKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEE  297 (370)
Q Consensus       219 ~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  297 (370)
                             ..+++|++|++++|+++.++ .++.+++|+.|++++|.....+             +..+..+++|+.|++++
T Consensus       203 -------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~-------------p~~~~~l~~L~~L~L~~  262 (328)
T 4fcg_A          203 -------ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-------------PPIFGGRAPLKRLILKD  262 (328)
T ss_dssp             -------GGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBC-------------CCCTTCCCCCCEEECTT
T ss_pred             -------cCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhh-------------HHHhcCCCCCCEEECCC
Confidence                   56777888888877776653 4666777888888777654433             23566777888888887


Q ss_pred             ccccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCCcceeEEechHhhhhhcc
Q 017525          298 LKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGLERKIVIKGQRRWWNELQ  353 (370)
Q Consensus       298 ~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~  353 (370)
                      |...+.++.....+++|+.|++++|+.++.+|.....++ .+..+....+....+.
T Consensus       263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~-~L~~l~l~~~~~~~l~  317 (328)
T 4fcg_A          263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP-ANCIILVPPHLQAQLD  317 (328)
T ss_dssp             CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSC-TTCEEECCGGGSCC--
T ss_pred             CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhcc-CceEEeCCHHHHHHHh
Confidence            766677766666777888888888877777777666653 4555555555554444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=4.3e-23  Score=184.57  Aligned_cols=211  Identities=18%  Similarity=0.194  Sum_probs=148.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c---chhhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P---LLFEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~---~~~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      ++.++.+|.. -.++|+.|++++|.++.++..++.++++|++|++++|.  .   .+..+..+++|++|++++|.++.+|
T Consensus        16 ~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~   94 (306)
T 2z66_A           16 SKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS   94 (306)
T ss_dssp             SSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE
T ss_pred             CCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh
Confidence            3557777774 34799999999999999998878999999999999998  2   2567778999999999999999899


Q ss_pred             cccccCCcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           77 IEFKCLVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      ..+..+++|++|++++| .+..++. ..+.++++|++|++++| .+..           .....+..+++|+.|+++++.
T Consensus        95 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~-----------~~~~~~~~l~~L~~L~l~~n~  161 (306)
T 2z66_A           95 SNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRV-----------AFNGIFNGLSSLEVLKMAGNS  161 (306)
T ss_dssp             EEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTS-CCEE-----------CSTTTTTTCTTCCEEECTTCE
T ss_pred             hhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCC-cCCc-----------cchhhcccCcCCCEEECCCCc
Confidence            88999999999999998 4555543 44889999999999999 6652           223456677888888887765


Q ss_pred             hhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEE
Q 017525          156 FHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVY  235 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  235 (370)
                      ......                           ...+..+++|++|++++|.++.++...+         ..+++|++|+
T Consensus       162 l~~~~~---------------------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~  205 (306)
T 2z66_A          162 FQENFL---------------------------PDIFTELRNLTFLDLSQCQLEQLSPTAF---------NSLSSLQVLN  205 (306)
T ss_dssp             EGGGEE---------------------------CSCCTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEE
T ss_pred             cccccc---------------------------hhHHhhCcCCCEEECCCCCcCCcCHHHh---------cCCCCCCEEE
Confidence            432000                           0124445556666666665555433222         3455566666


Q ss_pred             EecccccccC--cccCCCCccEEeeccCc
Q 017525          236 ISRSKFRHAT--WLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       236 l~~~~l~~~~--~l~~l~~L~~L~L~~~~  262 (370)
                      +++|+++.++  .+..+++|+.|++++|.
T Consensus       206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             CTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             CCCCccCccChhhccCcccCCEeECCCCC
Confidence            6666555443  24455556666665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=5.6e-23  Score=206.04  Aligned_cols=300  Identities=19%  Similarity=0.182  Sum_probs=174.7

Q ss_pred             CCCCCCCEEecCCCcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhcc---------------------------c
Q 017525           12 PVCPRLRTLFLSSNIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKV---------------------------V   60 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l---------------------------~   60 (370)
                      ..+++|+.|++++|.+. .+|...+..+++|++|++++|.   .+|..+..+                           +
T Consensus       315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~  394 (768)
T 3rgz_A          315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN  394 (768)
T ss_dssp             GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC
T ss_pred             hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC
Confidence            55666666666666555 5555545666666666666665   344444333                           3


Q ss_pred             cCCEEeccCCccc-ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc-ccccccc---------
Q 017525           61 SLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP-QARDSIL---------  129 (370)
Q Consensus        61 ~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~---------  129 (370)
                      +|++|++++|.++ .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++++| .+. .++..+.         
T Consensus       395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~  472 (768)
T 3rgz_A          395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLI  472 (768)
T ss_dssp             CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEE
T ss_pred             CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH-HhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEE
Confidence            4444444444443 45556667777777777777544455554 777777777777777 443 2221100         


Q ss_pred             ---cCCcchhhhhcccCCCccEEEEEecchhh-hHh-hhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEe
Q 017525          130 ---FGDCRVLVEELLGLEHLSVFTITLNNFHA-FQR-LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLT  204 (370)
Q Consensus       130 ---~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~~-~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~  204 (370)
                         .......+..+..+++|+.|+++.|.... ++. +....     .|+.+.+.++.-.... ...+..+++|+.|+++
T Consensus       473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~-----~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls  546 (768)
T 3rgz_A          473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-----NLAILKLSNNSFSGNI-PAELGDCRSLIWLDLN  546 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-----TCCEEECCSSCCEEEC-CGGGGGCTTCCEEECC
T ss_pred             ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC-----CCCEEECCCCcccCcC-CHHHcCCCCCCEEECC
Confidence               00111233445566666666666665542 222 22222     2555666555432111 2356677778888887


Q ss_pred             cCCcc-cceeccCCCc--------------------------------------c--------------------ccc--
Q 017525          205 YNDLD-EIKIDNGGEV--------------------------------------K--------------------RVL--  223 (370)
Q Consensus       205 ~~~l~-~~~~~~~~~~--------------------------------------~--------------------~~~--  223 (370)
                      +|.+. .++..++...                                      +                    ...  
T Consensus       547 ~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~  626 (768)
T 3rgz_A          547 TNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP  626 (768)
T ss_dssp             SSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC
T ss_pred             CCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch
Confidence            77665 2222211000                                      0                    000  


Q ss_pred             cccccccCcEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc
Q 017525          224 EISGFHSLKNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL  301 (370)
Q Consensus       224 ~~~~~~~L~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l  301 (370)
                      ....+++|++|++++|++++ + ..++.+++|+.|+|++|.....+             |..++.+++|+.|+++++.--
T Consensus       627 ~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-------------p~~l~~L~~L~~LdLs~N~l~  693 (768)
T 3rgz_A          627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-------------PDEVGDLRGLNILDLSSNKLD  693 (768)
T ss_dssp             SCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-------------CGGGGGCTTCCEEECCSSCCE
T ss_pred             hhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-------------ChHHhCCCCCCEEECCCCccc
Confidence            01335678888888887765 3 35778888888888888754333             357788899999999988444


Q ss_pred             ccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          302 KTVHSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       302 ~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      ..++.....++.|+.|++++++--..+|.+.
T Consensus       694 g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~  724 (768)
T 3rgz_A          694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMG  724 (768)
T ss_dssp             ECCCGGGGGCCCCSEEECCSSEEEEECCSSS
T ss_pred             CcCChHHhCCCCCCEEECcCCcccccCCCch
Confidence            4666666778899999998875444577653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.2e-22  Score=197.23  Aligned_cols=310  Identities=19%  Similarity=0.179  Sum_probs=199.1

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccc--
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIES--   74 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~--   74 (370)
                      +|.++.+++.  .++++|++|++++|.++.+++..+.++++|++|++++|.  .++. .++++++|++|++++|.++.  
T Consensus        61 ~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~  140 (570)
T 2z63_A           61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK  140 (570)
T ss_dssp             TCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCC
T ss_pred             CCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceec
Confidence            4567777654  678888888888888877776667888888888888877  3433 47777888888888887764  


Q ss_pred             cCcccccCCcccEEeccCcccccccCcccccCC-----------------------------------------------
Q 017525           75 LPIEFKCLVNLKCLNLEYTYGISRIPPKVISNL-----------------------------------------------  107 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----------------------------------------------  107 (370)
                      +|..++.+++|++|++++|. +..++...++.+                                               
T Consensus       141 lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~  219 (570)
T 2z63_A          141 LPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT  219 (570)
T ss_dssp             CCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHH
T ss_pred             ChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhh
Confidence            57777778888888877763 222222112222                                               


Q ss_pred             --------------------------------------------------------------CCCcEEEccccCCCcccc
Q 017525          108 --------------------------------------------------------------KILETLRMYECAALPQAR  125 (370)
Q Consensus       108 --------------------------------------------------------------~~L~~L~l~~~~~~~~~~  125 (370)
                                                                                    ++|+.|++.+| .+..++
T Consensus       220 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~  298 (570)
T 2z63_A          220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVK  298 (570)
T ss_dssp             HHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCC
T ss_pred             hhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhh
Confidence                                                                          33333333333 222111


Q ss_pred             ccccc--------------CCcch----------------hhhhcccCCCccEEEEEecchhhh----HhhhcCCCCCcc
Q 017525          126 DSILF--------------GDCRV----------------LVEELLGLEHLSVFTITLNNFHAF----QRLLGSCMPQYV  171 (370)
Q Consensus       126 ~~~~~--------------~~~~~----------------~~~~l~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~~l  171 (370)
                      ..+..              .....                .......+++|+.++++.+.....    ..+....     
T Consensus       299 ~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-----  373 (570)
T 2z63_A          299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT-----  373 (570)
T ss_dssp             BCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCS-----
T ss_pred             hhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccC-----
Confidence            10000              00000                000014678999999998876543    2233333     


Q ss_pred             ccCcEEecCcCCCCccccccccccCCCcEEEEecCCccccee-ccCCCccccccccccccCcEEEEeccccccc--Cccc
Q 017525          172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLF  248 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~  248 (370)
                      +|+.+.+.++.-....  ..+..+++|++|++++|.+..... ..+         ..+++|++|++++|+++..  ..+.
T Consensus       374 ~L~~L~l~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~  442 (570)
T 2z63_A          374 SLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHSNLKQMSEFSVF---------LSLRNLIYLDISHTHTRVAFNGIFN  442 (570)
T ss_dssp             CCCEEECCSCSEEEEE--EEEETCTTCCEEECTTSEEESCTTSCTT---------TTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccCEEECCCCcccccc--ccccccCCCCEEEccCCccccccchhhh---------hcCCCCCEEeCcCCcccccchhhhh
Confidence            3777887776433222  237788999999999988876643 122         5789999999999977664  3577


Q ss_pred             CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc-cCCCccCCCcceEeecCCCCCCC
Q 017525          249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV-HSKALPFPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i-~~~~~~~~~L~~L~l~~c~~L~~  327 (370)
                      .+++|+.|++++|......            .+..+..+++|+.|++++| .++.+ +.....+++|+.|++++| +++.
T Consensus       443 ~l~~L~~L~l~~n~l~~~~------------~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~  508 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENF------------LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN-QLKS  508 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGE------------ECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred             cCCcCcEEECcCCcCcccc------------chhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC-cCCC
Confidence            8999999999999854322            3357788999999999998 56666 334557899999999887 5777


Q ss_pred             CCCCCCCCCcceeEEe
Q 017525          328 LPLDCNRGLERKIVIK  343 (370)
Q Consensus       328 l~~~~~~~~~~~~~~~  343 (370)
                      +|.+....-..+..+.
T Consensus       509 ~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          509 VPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             CCTTTTTTCTTCCEEE
T ss_pred             CCHHHhhcccCCcEEE
Confidence            6654322224455544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=203.89  Aligned_cols=142  Identities=22%  Similarity=0.235  Sum_probs=102.6

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cc-hhhhhccccCCEEeccCCccccc-C
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PL-LFEISKVVSLQHLDLSHSRIESL-P   76 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~-~~~~~~l~~L~~L~l~~~~l~~l-p   76 (370)
                      +++++.+|.  -.++|++|++++|.++.+++..+.++++|++|++++|.   .+ |..+.++++|++|++++|.++.+ |
T Consensus        13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p   90 (844)
T 3j0a_A           13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP   90 (844)
T ss_dssp             CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred             CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence            456777777  56788888888888887655557888888888888885   33 67788888888888888888755 6


Q ss_pred             cccccCCcccEEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           77 IEFKCLVNLKCLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      ..++.+++|++|++++|...+..+ ...++++++|++|++++| .+....          ....+..+++|+.|+++.+.
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~----------~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLY----------LHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCC----------CCGGGGTCSSCCEEEEESSC
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccc----------cchhHhhCCCCCEEECCCCc
Confidence            678888888888888885444333 234778888888888888 554221          12346677777777777765


Q ss_pred             h
Q 017525          156 F  156 (370)
Q Consensus       156 ~  156 (370)
                      +
T Consensus       160 i  160 (844)
T 3j0a_A          160 I  160 (844)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=3.5e-22  Score=202.27  Aligned_cols=293  Identities=16%  Similarity=0.151  Sum_probs=213.0

Q ss_pred             CcccccccCC--CCCCCCCEEecCCC-cCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccc-
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIES-   74 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~-   74 (370)
                      +|.|+.+++.  .++++|++|++++| .+..+++..+.++++|++|++++|.   ..|..++++++|++|++++|.++. 
T Consensus        33 ~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~  112 (844)
T 3j0a_A           33 FNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA  112 (844)
T ss_dssp             SCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC
T ss_pred             CCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc
Confidence            5778887654  89999999999999 5557766668999999999999998   558899999999999999999974 


Q ss_pred             cCcc--cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC--CCccEEE
Q 017525           75 LPIE--FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL--EHLSVFT  150 (370)
Q Consensus        75 lp~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~l~  150 (370)
                      +|..  ++.+++|++|++++|...+..+...++++++|++|++++| .+...           ....+..+  ++|+.++
T Consensus       113 ~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~-----------~~~~l~~l~~~~L~~L~  180 (844)
T 3j0a_A          113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLV-----------CEHELEPLQGKTLSFFS  180 (844)
T ss_dssp             CSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCC-----------CSGGGHHHHHCSSCCCE
T ss_pred             cccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCee-----------CHHHcccccCCccceEE
Confidence            5554  8899999999999995544434345899999999999999 66532           22334444  7899999


Q ss_pred             EEecchhhhHh--hhcCC-CCCccccCcEEecCcCCCCcc--cccc-c--------------------------------
Q 017525          151 ITLNNFHAFQR--LLGSC-MPQYVSTPSLCLSHFNNSKSL--GVFS-L--------------------------------  192 (370)
Q Consensus       151 l~~~~~~~~~~--~~~~~-~~~~l~L~~l~l~~~~~~~~~--~~~~-l--------------------------------  192 (370)
                      ++.+.......  +.... .+..+.++.+++.++.-....  .+.. +                                
T Consensus       181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f  260 (844)
T 3j0a_A          181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF  260 (844)
T ss_dssp             ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred             CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence            99887644211  11111 112224778888766322111  1110 0                                


Q ss_pred             cc--cCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhh
Q 017525          193 AS--LRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEII  268 (370)
Q Consensus       193 ~~--l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~  268 (370)
                      ..  .++|+.|++++|.+..+....+         ..+++|++|++++|+++.+  ..+..+++|+.|+|++|.. +.+ 
T Consensus       261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~---------~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~~-  329 (844)
T 3j0a_A          261 AGLARSSVRHLDLSHGFVFSLNSRVF---------ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-GEL-  329 (844)
T ss_dssp             TTTTTSCCCEEECTTCCCCEECSCCS---------SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-SCC-
T ss_pred             hccccCCccEEECCCCcccccChhhh---------hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-Ccc-
Confidence            00  2578888888888877654443         5689999999999988775  3577899999999999874 222 


Q ss_pred             hccccCCCcccccCCccccccccccccccccccccccCC-CccCCCcceEeecCCCCCCCCCC
Q 017525          269 DSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK-ALPFPHLKEMSVDRCPLLKKLPL  330 (370)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~-~~~~~~L~~L~l~~c~~L~~l~~  330 (370)
                                 .+..+..+++|+.|+++++ .+..+... ...+++|+.|+++++ .++.++.
T Consensus       330 -----------~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~  379 (844)
T 3j0a_A          330 -----------YSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF  379 (844)
T ss_dssp             -----------CSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS
T ss_pred             -----------CHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcccC
Confidence                       2347788999999999998 57776654 346899999999987 4565554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=1.9e-23  Score=187.82  Aligned_cols=267  Identities=15%  Similarity=0.121  Sum_probs=193.9

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..+++|+.|++++|.++.+++..+..+++|++|++++|.  ..+. +..+++|++|++++|.++.++.    .++|++|+
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~  105 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLH  105 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence            457799999999999999988779999999999999998  3443 8899999999999999887663    48999999


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +++| .+..++.   ..+++|++|++++| .+..+           ....+..+++|+.|+++.|.+...........+.
T Consensus       106 l~~n-~l~~~~~---~~~~~L~~L~l~~N-~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~  169 (317)
T 3o53_A          106 AANN-NISRVSC---SRGQGKKNIYLANN-KITML-----------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (317)
T ss_dssp             CCSS-CCSEEEE---CCCSSCEEEECCSS-CCCSG-----------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             CCCC-ccCCcCc---cccCCCCEEECCCC-CCCCc-----------cchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence            9998 4554443   34788999999999 77632           2345667889999999988776543211111111


Q ss_pred             ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc
Q 017525          170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF  248 (370)
Q Consensus       170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~  248 (370)
                        .|+.+.+.++.-...   .....+++|++|++++|.++.++..+          ..+++|++|++++|+++.++ .+.
T Consensus       170 --~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~----------~~l~~L~~L~L~~N~l~~l~~~~~  234 (317)
T 3o53_A          170 --TLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEF----------QSAAGVTWISLRNNKLVLIEKALR  234 (317)
T ss_dssp             --TCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGG----------GGGTTCSEEECTTSCCCEECTTCC
T ss_pred             --cCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhh----------cccCcccEEECcCCcccchhhHhh
Confidence              377777776653322   23445789999999999998876554          56889999999999887764 466


Q ss_pred             CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCC
Q 017525          249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLK  326 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~  326 (370)
                      .+++|+.|++++|....+..            +..+..+++|+.|++.++..++.........+.+....-..|..+.
T Consensus       235 ~l~~L~~L~l~~N~~~~~~~------------~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~  300 (317)
T 3o53_A          235 FSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP  300 (317)
T ss_dssp             CCTTCCEEECTTCCCBHHHH------------HHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCT
T ss_pred             cCCCCCEEEccCCCccCcCH------------HHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCC
Confidence            78899999999988663322            2366788999999998887776654444444444443334454443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=193.57  Aligned_cols=305  Identities=20%  Similarity=0.195  Sum_probs=206.7

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc--c
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES--L   75 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~--l   75 (370)
                      +|.++.+++.  ..+++|++|++++|.++.+++..+.++++|++|++++|.  .+|..  .+++|++|++++|.++.  +
T Consensus        30 ~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~  107 (520)
T 2z7x_B           30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPI  107 (520)
T ss_dssp             SSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSSCCSSCCC
T ss_pred             CCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCCccccccc
Confidence            5778888753  889999999999999998876668999999999999999  67765  89999999999999975  5


Q ss_pred             CcccccCCcccEEeccCcccccccCcccccCCCCC--cEEEccccCCC--c-ccccccccC-------------------
Q 017525           76 PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL--ETLRMYECAAL--P-QARDSILFG-------------------  131 (370)
Q Consensus        76 p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~--~-~~~~~~~~~-------------------  131 (370)
                      |..++.+++|++|++++|.. ..   ..+..+++|  ++|++.+| .+  . ..+..+..-                   
T Consensus       108 p~~~~~l~~L~~L~L~~n~l-~~---~~~~~l~~L~L~~L~l~~n-~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~  182 (520)
T 2z7x_B          108 CKEFGNMSQLKFLGLSTTHL-EK---SSVLPIAHLNISKVLLVLG-ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL  182 (520)
T ss_dssp             CGGGGGCTTCCEEEEEESSC-CG---GGGGGGTTSCEEEEEEEEC-TTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred             hhhhccCCcceEEEecCccc-ch---hhccccccceeeEEEeecc-cccccccccccccccccceEEEEeccCcchhhhh
Confidence            67899999999999999843 32   225566666  77777776 43  1 111000000                   


Q ss_pred             --------------Cc-----------chhhhhcc---------------------------cCCCccEEEEEecchh--
Q 017525          132 --------------DC-----------RVLVEELL---------------------------GLEHLSVFTITLNNFH--  157 (370)
Q Consensus       132 --------------~~-----------~~~~~~l~---------------------------~l~~L~~l~l~~~~~~--  157 (370)
                                    ..           ...+..+.                           ..++|+.++++.+...  
T Consensus       183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  262 (520)
T 2z7x_B          183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ  262 (520)
T ss_dssp             CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC
T ss_pred             hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc
Confidence                          00           00000000                           0124444444443322  


Q ss_pred             --------------------------hhH-----hhhcC-------------------CCCCccccCcEEecCcCCCCcc
Q 017525          158 --------------------------AFQ-----RLLGS-------------------CMPQYVSTPSLCLSHFNNSKSL  187 (370)
Q Consensus       158 --------------------------~~~-----~~~~~-------------------~~~~~l~L~~l~l~~~~~~~~~  187 (370)
                                                .++     .....                   ..+.  .++.+++.++.-.. .
T Consensus       263 ~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~--~L~~L~Ls~n~l~~-~  339 (520)
T 2z7x_B          263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKIS--PFLHLDFSNNLLTD-T  339 (520)
T ss_dssp             CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC--CCCEEECCSSCCCT-T
T ss_pred             cccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCC--cccEEEeECCccCh-h
Confidence                                      111     11000                   1222  37778887765333 2


Q ss_pred             ccccccccCCCcEEEEecCCccccee--ccCCCccccccccccccCcEEEEecccccc-cC--cccCCCCccEEeeccCc
Q 017525          188 GVFSLASLRHLQTLQLTYNDLDEIKI--DNGGEVKRVLEISGFHSLKNVYISRSKFRH-AT--WLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       188 ~~~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~  262 (370)
                      ....+..+++|++|++++|.++.++.  ..+         ..+++|++|++++|+++. ++  .+..+++|++|++++|.
T Consensus       340 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~---------~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~  410 (520)
T 2z7x_B          340 VFENCGHLTELETLILQMNQLKELSKIAEMT---------TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI  410 (520)
T ss_dssp             TTTTCCCCSSCCEEECCSSCCCBHHHHHHHH---------TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred             hhhhhccCCCCCEEEccCCccCccccchHHH---------hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence            23467889999999999999986532  111         578999999999998877 55  36678999999999998


Q ss_pred             chHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCC-CCCCCcceeE
Q 017525          263 DMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLD-CNRGLERKIV  341 (370)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~-~~~~~~~~~~  341 (370)
                      ....++.             .+.  ++|+.|++++| .++.++.....+++|++|++++| +++.+|.. .... ..+..
T Consensus       411 l~~~~~~-------------~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l-~~L~~  472 (520)
T 2z7x_B          411 LTDTIFR-------------CLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRL-TSLQK  472 (520)
T ss_dssp             CCGGGGG-------------SCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTC-TTCCE
T ss_pred             CCcchhh-------------hhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccC-CcccE
Confidence            5443321             222  79999999998 67888777778999999999987 68888876 2222 34444


Q ss_pred             Ee
Q 017525          342 IK  343 (370)
Q Consensus       342 ~~  343 (370)
                      +.
T Consensus       473 L~  474 (520)
T 2z7x_B          473 IW  474 (520)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=2.8e-22  Score=181.39  Aligned_cols=284  Identities=16%  Similarity=0.125  Sum_probs=200.0

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|+.|++++|.++.+++..+.++++|++|++++|.   ..|..+..+++|++|++++|.++.+|..
T Consensus        42 ~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  120 (332)
T 2ft3_A           42 DLGLKAVPKE-ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN  120 (332)
T ss_dssp             SSCCSSCCSC-CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred             CCCccccCCC-CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence            4567777765 34799999999999998877668999999999999998   4478899999999999999999999886


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      +.  ++|++|++++| .+..++...+.++++|++|++++| .+...+         .....+..+ +|+.++++.+....
T Consensus       121 ~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---------~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          121 LP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGN-PLENSG---------FEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSC-CCBGGG---------SCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             cc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCC-ccccCC---------CCcccccCC-ccCEEECcCCCCCc
Confidence            65  89999999999 667777766899999999999999 665321         234445555 88888888887766


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (370)
                      ++....     . .++.+.+.++.- .......+..+++|++|++++|.++.++...+         ..+++|++|++++
T Consensus       187 l~~~~~-----~-~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~  250 (332)
T 2ft3_A          187 IPKDLP-----E-TLNELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSL---------SFLPTLRELHLDN  250 (332)
T ss_dssp             CCSSSC-----S-SCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG---------GGCTTCCEEECCS
T ss_pred             cCcccc-----C-CCCEEECCCCcC-CccCHHHhcCCCCCCEEECCCCcCCcCChhHh---------hCCCCCCEEECCC
Confidence            543211     1 466666665432 22223457778888888888888887754333         5678888898888


Q ss_pred             ccccccC-cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc-ccccCC-CccCCCcc
Q 017525          239 SKFRHAT-WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL-KTVHSK-ALPFPHLK  315 (370)
Q Consensus       239 ~~l~~~~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~i~~~-~~~~~~L~  315 (370)
                      |+++.++ .+..+++|+.|++++|.. +.+....+.+.      .....++.|+.|++++++.. ..+... ...++.|+
T Consensus       251 N~l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~  323 (332)
T 2ft3_A          251 NKLSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPV------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL  323 (332)
T ss_dssp             SCCCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCS------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred             CcCeecChhhhcCccCCEEECCCCCC-CccChhHcccc------ccccccccccceEeecCcccccccCcccccccchhh
Confidence            8777765 477788888888888763 33321111100      01122577888888887532 122222 23466777


Q ss_pred             eEeecCCC
Q 017525          316 EMSVDRCP  323 (370)
Q Consensus       316 ~L~l~~c~  323 (370)
                      .+++.++.
T Consensus       324 ~l~l~~n~  331 (332)
T 2ft3_A          324 AIQFGNYK  331 (332)
T ss_dssp             TEEC----
T ss_pred             hhhccccc
Confidence            77777654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=188.64  Aligned_cols=233  Identities=19%  Similarity=0.262  Sum_probs=180.3

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-c
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-E   78 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~   78 (370)
                      +.++.+|.. -.++++.|++++|.++.++...+.++++|++|++++|.   ..+..+.++++|++|++++|.++.+|. .
T Consensus        53 ~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~  131 (440)
T 3zyj_A           53 KNLREVPDG-ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA  131 (440)
T ss_dssp             CCCSSCCSC-CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred             CCcCcCCCC-CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence            456777764 34789999999999998887778999999999999998   445778899999999999999998876 5


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      +..+++|++|++++| .+..++...+.++++|++|++++|..+..++           ...+..+++|+.|+++.|.+..
T Consensus       132 ~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          132 FVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYIS-----------EGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             SCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCSSCCEEECTTSCCSS
T ss_pred             hhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeC-----------cchhhcccccCeecCCCCcCcc
Confidence            889999999999998 5677777669999999999999864555332           3457778999999999988776


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (370)
                      ++.+....     +|+.|+++++. ++......+..+++|+.|++++|.++.++...+         ..+++|++|+|++
T Consensus       200 ~~~~~~l~-----~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~  264 (440)
T 3zyj_A          200 IPNLTPLI-----KLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF---------DNLQSLVEINLAH  264 (440)
T ss_dssp             CCCCTTCS-----SCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTSS---------TTCTTCCEEECTT
T ss_pred             ccccCCCc-----ccCEEECCCCc-cCccChhhhccCccCCEEECCCCceeEEChhhh---------cCCCCCCEEECCC
Confidence            65433322     36777777653 333333467778888888888888887765444         5678888888888


Q ss_pred             ccccccC--cccCCCCccEEeeccCcc
Q 017525          239 SKFRHAT--WLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       239 ~~l~~~~--~l~~l~~L~~L~L~~~~~  263 (370)
                      |+++.++  .+..+++|+.|+|++|+.
T Consensus       265 N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          265 NNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             SCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCCCccChhHhccccCCCEEEcCCCCc
Confidence            8777764  356788888888888763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.89  E-value=4.7e-22  Score=192.67  Aligned_cols=294  Identities=20%  Similarity=0.206  Sum_probs=204.8

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccC-
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLP-   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp-   76 (370)
                      +|.|+.+++.  .++++|++|++++|.++.+++..+.++++|++|++++|.  .+|..  .+++|++|++++|.++.+| 
T Consensus        61 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~  138 (562)
T 3a79_B           61 QNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPV  138 (562)
T ss_dssp             SSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCC
T ss_pred             CCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccCc
Confidence            5788888854  889999999999999998877778999999999999999  77766  8999999999999998664 


Q ss_pred             -cccccCCcccEEeccCcccccccCcccccCCCCC--cEEEccccCCC--ccc-ccccccC-----------------Cc
Q 017525           77 -IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL--ETLRMYECAAL--PQA-RDSILFG-----------------DC  133 (370)
Q Consensus        77 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~~--~~~-~~~~~~~-----------------~~  133 (370)
                       ..++.+++|++|++++|. +...   .+..+++|  ++|++++| .+  ... +..+..-                 ..
T Consensus       139 p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~L~~n-~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~  213 (562)
T 3a79_B          139 CKEFGNLTKLTFLGLSAAK-FRQL---DLLPVAHLHLSCILLDLV-SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV  213 (562)
T ss_dssp             CGGGGGCTTCCEEEEECSB-CCTT---TTGGGTTSCEEEEEEEES-SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred             hHhhcccCcccEEecCCCc-cccC---chhhhhhceeeEEEeecc-cccccccCcccccccCcceEEEEecCccchhhhh
Confidence             689999999999999984 3332   24555555  88998888 54  211 1000000                 00


Q ss_pred             -------------------------chhhhhccc---------------------------CCCccEEEEEecchh-hhH
Q 017525          134 -------------------------RVLVEELLG---------------------------LEHLSVFTITLNNFH-AFQ  160 (370)
Q Consensus       134 -------------------------~~~~~~l~~---------------------------l~~L~~l~l~~~~~~-~~~  160 (370)
                                               ......+..                           ..+|+.++++.+... .++
T Consensus       214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip  293 (562)
T 3a79_B          214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID  293 (562)
T ss_dssp             EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred             hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence                                     000000000                           114444444444322 110


Q ss_pred             h--------------------------------hhcC-------------------CCCCccccCcEEecCcCCCCcccc
Q 017525          161 R--------------------------------LLGS-------------------CMPQYVSTPSLCLSHFNNSKSLGV  189 (370)
Q Consensus       161 ~--------------------------------~~~~-------------------~~~~~l~L~~l~l~~~~~~~~~~~  189 (370)
                      .                                +...                   ..+.  .++.+++.++.-.. ...
T Consensus       294 ~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~--~L~~L~l~~n~l~~-~~~  370 (562)
T 3a79_B          294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS--SFTFLNFTQNVFTD-SVF  370 (562)
T ss_dssp             CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC--CCCEEECCSSCCCT-TTT
T ss_pred             chhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC--CceEEECCCCcccc-chh
Confidence            0                                0000                   1122  36777777654332 223


Q ss_pred             ccccccCCCcEEEEecCCccccee--ccCCCccccccccccccCcEEEEecccccc-cC--cccCCCCccEEeeccCcch
Q 017525          190 FSLASLRHLQTLQLTYNDLDEIKI--DNGGEVKRVLEISGFHSLKNVYISRSKFRH-AT--WLFLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       190 ~~l~~l~~L~~L~l~~~~l~~~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~--~l~~l~~L~~L~L~~~~~~  264 (370)
                      ..+..+++|++|++++|.++.++.  ..+         ..+++|++|++++|+++. ++  .+..+++|+.|++++|...
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLKNFFKVALMT---------KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCCBTTHHHHTT---------TTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             hhhcccCCCCEEECCCCCcCCcccchhhh---------cCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence            467889999999999999987642  111         578999999999998876 54  3677899999999999854


Q ss_pred             HHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCC
Q 017525          265 KEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLD  331 (370)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~  331 (370)
                      ..++             ..+.  ++|+.|+++++ .++.++.....+++|+.|+++++ +++.+|.+
T Consensus       442 ~~~~-------------~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~  491 (562)
T 3a79_B          442 GSVF-------------RCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG  491 (562)
T ss_dssp             GGGG-------------SSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred             cchh-------------hhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence            4332             1222  79999999998 78888887778999999999986 68888876

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=9.1e-23  Score=182.93  Aligned_cols=234  Identities=16%  Similarity=0.147  Sum_probs=185.1

Q ss_pred             cccc---cccCC-CCCCCCCEEecCC-CcCC-CCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccc
Q 017525            3 NHIE---NLVES-PVCPRLRTLFLSS-NIFH-RVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIE   73 (370)
Q Consensus         3 n~l~---~l~~~-~~l~~L~~L~l~~-~~i~-~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~   73 (370)
                      |.++   .+|.. .++++|++|++++ |.+. .+|.. +..+++|++|++++|.   .+|..+..+++|++|++++|.++
T Consensus        60 ~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~  138 (313)
T 1ogq_A           60 LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS  138 (313)
T ss_dssp             CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC
Confidence            4555   46665 8899999999995 7776 56665 8999999999999998   67888999999999999999997


Q ss_pred             -ccCcccccCCcccEEeccCcccccccCcccccCCC-CCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEE
Q 017525           74 -SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLK-ILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTI  151 (370)
Q Consensus        74 -~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l  151 (370)
                       .+|..++.+++|++|++++|...+.+|.. +.+++ +|++|++++| .+..           ..+..+..++ |+.|++
T Consensus       139 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N-~l~~-----------~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          139 GTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRN-RLTG-----------KIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSS-EEEE-----------ECCGGGGGCC-CSEEEC
T ss_pred             CcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCC-eeec-----------cCChHHhCCc-ccEEEC
Confidence             78889999999999999999655578876 88888 9999999999 6652           2233445555 888888


Q ss_pred             EecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccC
Q 017525          152 TLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSL  231 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L  231 (370)
                      +.|.+...                            ....+..+++|++|++++|.+......+          ..+++|
T Consensus       205 s~N~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~l~~L  246 (313)
T 1ogq_A          205 SRNMLEGD----------------------------ASVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNL  246 (313)
T ss_dssp             CSSEEEEC----------------------------CGGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTC
T ss_pred             cCCcccCc----------------------------CCHHHhcCCCCCEEECCCCceeeecCcc----------cccCCC
Confidence            77653221                            0125677899999999999887554332          567999


Q ss_pred             cEEEEecccccc-c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccccc
Q 017525          232 KNVYISRSKFRH-A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKT  303 (370)
Q Consensus       232 ~~L~l~~~~l~~-~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~  303 (370)
                      ++|++++|++++ + .++..+++|+.|+|++|.....++              ....+++|+.+++++++.+-.
T Consensus       247 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip--------------~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--------------QGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--------------CSTTGGGSCGGGTCSSSEEES
T ss_pred             CEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC--------------CCccccccChHHhcCCCCccC
Confidence            999999998874 3 457889999999999998654332              337899999999999876544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.89  E-value=4.4e-22  Score=195.39  Aligned_cols=119  Identities=27%  Similarity=0.258  Sum_probs=92.0

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.|+.+++.  .++++|++|+|++|.|+.+++.+|.++++|++|+|++|.  .+| ..|.++++|++|++++|+++.+|
T Consensus        61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~  140 (635)
T 4g8a_A           61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  140 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST
T ss_pred             CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC
Confidence            5778888764  678888888888888888887778888888888888887  444 45788888888888888888777


Q ss_pred             c-ccccCCcccEEeccCccccc-ccCcccccCCCCCcEEEccccCCCc
Q 017525           77 I-EFKCLVNLKCLNLEYTYGIS-RIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        77 ~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      . .++.+++|++|++++|.... ..|. .++++++|++|++++| .+.
T Consensus       141 ~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N-~l~  186 (635)
T 4g8a_A          141 NFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSN-KIQ  186 (635)
T ss_dssp             TCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSS-CCC
T ss_pred             hhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCc-ccc
Confidence            6 47888888888888884332 2334 3778888888888887 554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=5.7e-22  Score=186.95  Aligned_cols=232  Identities=18%  Similarity=0.214  Sum_probs=176.5

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc-
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE-   78 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~-   78 (370)
                      +.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|.   ..+..+.++++|++|++++|.++.+|.. 
T Consensus        64 ~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  142 (452)
T 3zyi_A           64 RGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA  142 (452)
T ss_dssp             SCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTT
T ss_pred             CCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhh
Confidence            456667764 34789999999999998877668999999999999998   4457788999999999999999888764 


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      +..+++|++|++++| .+..++...+.++++|++|++++|..+..++           ...+..+++|+.|+++.|.+..
T Consensus       143 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-----------~~~~~~l~~L~~L~L~~n~l~~  210 (452)
T 3zyi_A          143 FEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYIS-----------EGAFEGLFNLKYLNLGMCNIKD  210 (452)
T ss_dssp             SSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC-----------TTTTTTCTTCCEEECTTSCCSS
T ss_pred             hcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccC-----------hhhccCCCCCCEEECCCCcccc
Confidence            788999999999998 5677777668999999999999864555332           3356778899999999888776


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEec
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  238 (370)
                      ++.+....     +|+.|++.++.- .......+..+++|+.|++++|.++.+....+         ..+++|++|+|++
T Consensus       211 ~~~~~~l~-----~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~  275 (452)
T 3zyi_A          211 MPNLTPLV-----GLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF---------DGLASLVELNLAH  275 (452)
T ss_dssp             CCCCTTCT-----TCCEEECTTSCC-SEECGGGGTTCTTCCEEECTTSCCCEECTTTT---------TTCTTCCEEECCS
T ss_pred             cccccccc-----cccEEECcCCcC-cccCcccccCccCCCEEEeCCCcCceECHHHh---------cCCCCCCEEECCC
Confidence            65433332     366677766533 22223467778888888888888877755443         5678888888888


Q ss_pred             ccccccC--cccCCCCccEEeeccCc
Q 017525          239 SKFRHAT--WLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       239 ~~l~~~~--~l~~l~~L~~L~L~~~~  262 (370)
                      |+++.++  .+..+++|+.|+|++|+
T Consensus       276 N~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          276 NNLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CcCCccChHHhccccCCCEEEccCCC
Confidence            8777764  35667888888888776

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=2e-21  Score=175.61  Aligned_cols=123  Identities=23%  Similarity=0.325  Sum_probs=99.3

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCccccc-CcccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~   91 (370)
                      ++++++++++.++.+|..+   .+++++|++++|.  .++ ..+.++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus        32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            7899999999888888652   3789999999998  444 4788999999999999999876 6688999999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      +| .+..+|.. +.  ++|++|++++| .+..+           ....+..+++|+.++++.+...
T Consensus       109 ~n-~l~~l~~~-~~--~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~  158 (330)
T 1xku_A          109 KN-QLKELPEK-MP--KTLQELRVHEN-EITKV-----------RKSVFNGLNQMIVVELGTNPLK  158 (330)
T ss_dssp             SS-CCSBCCSS-CC--TTCCEEECCSS-CCCBB-----------CHHHHTTCTTCCEEECCSSCCC
T ss_pred             CC-cCCccChh-hc--ccccEEECCCC-ccccc-----------CHhHhcCCccccEEECCCCcCC
Confidence            98 56677765 33  78999999999 66632           2445677889999988887653

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=4.2e-22  Score=176.28  Aligned_cols=211  Identities=18%  Similarity=0.241  Sum_probs=145.4

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCc-cccc-Cc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSR-IESL-PI   77 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~-l~~l-p~   77 (370)
                      +.++.+|.. ..++|+.|++++|.++.++...+..+++|++|++++|.   ..|..+..+++|++|++++|. ++.+ |.
T Consensus        21 ~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~   99 (285)
T 1ozn_A           21 QGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPA   99 (285)
T ss_dssp             SCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTT
T ss_pred             CCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHH
Confidence            445566553 35677888888877777776557777888888887776   336667777788888888775 6665 44


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      .+..+++|++|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++++.+.
T Consensus       100 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~l~~L~~L~l~~n~l~  166 (285)
T 1ozn_A          100 TFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALP-----------DDTFRDLGNLTHLFLHGNRIS  166 (285)
T ss_dssp             TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCC
T ss_pred             HhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCC-cccccC-----------HhHhccCCCccEEECCCCccc
Confidence            6777778888888777 444444444777778888888777 555322           233555666777666655422


Q ss_pred             hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525          158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS  237 (370)
Q Consensus       158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (370)
                      .+                            ....+..+++|++|++++|.+..+....+         ..+++|++|+++
T Consensus       167 ~~----------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~  209 (285)
T 1ozn_A          167 SV----------------------------PERAFRGLHSLDRLLLHQNRVAHVHPHAF---------RDLGRLMTLYLF  209 (285)
T ss_dssp             EE----------------------------CTTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECC
T ss_pred             cc----------------------------CHHHhcCccccCEEECCCCcccccCHhHc---------cCcccccEeeCC
Confidence            11                            11246667889999999988887754443         567889999999


Q ss_pred             cccccccC--cccCCCCccEEeeccCcch
Q 017525          238 RSKFRHAT--WLFLAPNLKRVEIDNCQDM  264 (370)
Q Consensus       238 ~~~l~~~~--~l~~l~~L~~L~L~~~~~~  264 (370)
                      +|++++++  .+..+++|+.|++++|+..
T Consensus       210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          210 ANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             SSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            99887765  3678899999999988754

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.87  E-value=7.8e-22  Score=179.98  Aligned_cols=147  Identities=24%  Similarity=0.328  Sum_probs=125.4

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.++.++..  .++++|+.|++++|.++.+++..+.++++|++|++++|.  .++.. +.++++|++|++++|.++.+|
T Consensus        61 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  140 (353)
T 2z80_A           61 NNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLG  140 (353)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSC
T ss_pred             CCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccC
Confidence            5778888874  889999999999999998877668999999999999998  55554 889999999999999999888


Q ss_pred             c--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEec
Q 017525           77 I--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLN  154 (370)
Q Consensus        77 ~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  154 (370)
                      .  .++.+++|++|++++|..++.++...+.++++|++|++++| .+..           ..+..+..+++|+.++++.+
T Consensus       141 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~-----------~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          141 ETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQS-----------YEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCE-----------ECTTTTTTCSEEEEEEEECS
T ss_pred             chhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCc-----------cCHHHHhccccCCeecCCCC
Confidence            7  68899999999999986677776656999999999999999 6653           23556778899999999988


Q ss_pred             chhhhH
Q 017525          155 NFHAFQ  160 (370)
Q Consensus       155 ~~~~~~  160 (370)
                      ....++
T Consensus       209 ~l~~~~  214 (353)
T 2z80_A          209 QHILLL  214 (353)
T ss_dssp             CSTTHH
T ss_pred             ccccch
Confidence            765544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.86  E-value=1.7e-20  Score=182.09  Aligned_cols=245  Identities=16%  Similarity=0.133  Sum_probs=174.3

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +|.++.+|.... ++|+.|++++|.++.+|.    .+++|++|++++|.  .+|.   .+++|++|++++|.++.+|.  
T Consensus        49 ~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~--  118 (622)
T 3g06_A           49 ESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA--  118 (622)
T ss_dssp             SSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC--
T ss_pred             CCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC--
Confidence            466777777522 788889998888888776    57888889998888  5665   67888888998888888876  


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                       .+++|+.|++++| .+..+|..    +++|++|++++| .+..++         .      ...+|+.|++..|.+..+
T Consensus       119 -~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N-~l~~l~---------~------~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          119 -LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDN-QLASLP---------A------LPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             -CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCC
T ss_pred             -CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCC-cCCCcC---------C------ccCCCCEEECCCCCCCCC
Confidence             5678888888888 56666653    488888888888 665433         1      235677777777776655


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +.     .+.  +|+.|.++++.-....     ..+++|+.|++++|.++.++             ..+++|++|++++|
T Consensus       177 ~~-----~~~--~L~~L~Ls~N~l~~l~-----~~~~~L~~L~L~~N~l~~l~-------------~~~~~L~~L~Ls~N  231 (622)
T 3g06_A          177 PM-----LPS--GLQELSVSDNQLASLP-----TLPSELYKLWAYNNRLTSLP-------------ALPSGLKELIVSGN  231 (622)
T ss_dssp             CC-----CCT--TCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSCC-------------CCCTTCCEEECCSS
T ss_pred             cc-----cCC--CCcEEECCCCCCCCCC-----CccchhhEEECcCCcccccC-------------CCCCCCCEEEccCC
Confidence            41     111  4666776665422111     12367888888888777654             33578888888888


Q ss_pred             cccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEee
Q 017525          240 KFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSV  319 (370)
Q Consensus       240 ~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l  319 (370)
                      +++.++  ..+++|+.|++++|.. +.+             +.   .+++|+.|++++| .++.++.....+++|+.|++
T Consensus       232 ~L~~lp--~~l~~L~~L~Ls~N~L-~~l-------------p~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          232 RLTSLP--VLPSELKELMVSGNRL-TSL-------------PM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNL  291 (622)
T ss_dssp             CCSCCC--CCCTTCCEEECCSSCC-SCC-------------CC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEEC
T ss_pred             ccCcCC--CCCCcCcEEECCCCCC-CcC-------------Cc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEe
Confidence            887776  4568888888888753 222             11   5678888888887 67777666667888888888


Q ss_pred             cCCC
Q 017525          320 DRCP  323 (370)
Q Consensus       320 ~~c~  323 (370)
                      .+++
T Consensus       292 ~~N~  295 (622)
T 3g06_A          292 EGNP  295 (622)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            8775

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=1.1e-21  Score=176.24  Aligned_cols=262  Identities=16%  Similarity=0.102  Sum_probs=170.9

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      ..++..+++.+.+...+...+..+++|++|++++|.   ..|..+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus        10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls   88 (317)
T 3o53_A           10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN   88 (317)
T ss_dssp             TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred             CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence            446667777777776667767888999999999998   455788999999999999999986665 8899999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      +| .+..+     ...++|++|++++| .+..++              ...+++|+.++++.+.+..+..... ..+.  
T Consensus        89 ~n-~l~~l-----~~~~~L~~L~l~~n-~l~~~~--------------~~~~~~L~~L~l~~N~l~~~~~~~~-~~l~--  144 (317)
T 3o53_A           89 NN-YVQEL-----LVGPSIETLHAANN-NISRVS--------------CSRGQGKKNIYLANNKITMLRDLDE-GCRS--  144 (317)
T ss_dssp             SS-EEEEE-----EECTTCCEEECCSS-CCSEEE--------------ECCCSSCEEEECCSSCCCSGGGBCT-GGGS--
T ss_pred             CC-ccccc-----cCCCCcCEEECCCC-ccCCcC--------------ccccCCCCEEECCCCCCCCccchhh-hccC--
Confidence            98 44443     34589999999999 776432              1235788999998887665432110 0111  


Q ss_pred             ccCcEEecCcCCCCccccccc-cccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-cccC
Q 017525          172 STPSLCLSHFNNSKSLGVFSL-ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLFL  249 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~  249 (370)
                      .|+.++++++.-. ......+ ..+++|++|++++|.++.++..           ..+++|++|++++|+++.++ .+..
T Consensus       145 ~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~l~~~~~~  212 (317)
T 3o53_A          145 RVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQS  212 (317)
T ss_dssp             SEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGG
T ss_pred             CCCEEECCCCCCC-cccHHHHhhccCcCCEEECCCCcCcccccc-----------cccccCCEEECCCCcCCcchhhhcc
Confidence            3566666554322 2212223 3566777777777776665321           23667777777777666553 3556


Q ss_pred             CCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccccc-ccccCCCccCCCcceEeecCCCCCCC
Q 017525          250 APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNL-KTVHSKALPFPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       250 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l-~~i~~~~~~~~~L~~L~l~~c~~L~~  327 (370)
                      +++|+.|++++|... .+             +..+..+++|+.|++++++-. ..++.....++.|+.+++.++..++.
T Consensus       213 l~~L~~L~L~~N~l~-~l-------------~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          213 AAGVTWISLRNNKLV-LI-------------EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             GTTCSEEECTTSCCC-EE-------------CTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred             cCcccEEECcCCccc-ch-------------hhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence            677777777776532 22             234556677777777766322 12222233466667666665555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=4.5e-20  Score=181.08  Aligned_cols=117  Identities=23%  Similarity=0.228  Sum_probs=101.6

Q ss_pred             ccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc-cc
Q 017525            4 HIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI-EF   79 (370)
Q Consensus         4 ~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~   79 (370)
                      +++.+|.. =.+++++|+|++|.|+.+++..|.++++|++|++++|.  .+ +.+|.++++|++|++++|+++.+|. .+
T Consensus        42 ~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f  120 (635)
T 4g8a_A           42 NFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF  120 (635)
T ss_dssp             CCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred             CcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence            56777764 12589999999999999998779999999999999998  44 4578999999999999999998886 57


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcc
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQ  123 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  123 (370)
                      +.+++|++|++++| .+..++...|+++++|++|++++| .+..
T Consensus       121 ~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~  162 (635)
T 4g8a_A          121 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQS  162 (635)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred             cCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccC-cccc
Confidence            89999999999999 667777766999999999999999 6653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=2e-20  Score=175.81  Aligned_cols=240  Identities=17%  Similarity=0.183  Sum_probs=179.4

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~   91 (370)
                      ..+.++..+..++.+|..+   .+++++|++++|.   ..+..+.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus        44 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCCEEEeCCCCcCcCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            4577888888899998752   3789999999998   445788999999999999999987764 68899999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch-hhhHhhhcCCCCCc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF-HAFQRLLGSCMPQY  170 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~  170 (370)
                      +| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++.+.. ..++. .....+. 
T Consensus       121 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~-  185 (440)
T 3zyj_A          121 DN-RLTTIPNGAFVYLSKLKELWLRNN-PIESIP-----------SYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLS-  185 (440)
T ss_dssp             SS-CCSSCCTTTSCSCSSCCEEECCSC-CCCEEC-----------TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCS-
T ss_pred             CC-cCCeeCHhHhhccccCceeeCCCC-cccccC-----------HHHhhhCcccCEeCCCCCCCcceeCc-chhhccc-
Confidence            98 677777766999999999999999 776433           34577889999999987432 22221 1111222 


Q ss_pred             cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--ccc
Q 017525          171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLF  248 (370)
Q Consensus       171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~  248 (370)
                       +|+.|.+.++.-..   ++.+..+++|+.|++++|.++.+....+         ..+++|++|++++|+++.+.  .+.
T Consensus       186 -~L~~L~L~~n~l~~---~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~  252 (440)
T 3zyj_A          186 -NLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLSAIRPGSF---------QGLMHLQKLWMIQSQIQVIERNAFD  252 (440)
T ss_dssp             -SCCEEECTTSCCSS---CCCCTTCSSCCEEECTTSCCCEECTTTT---------TTCTTCCEEECTTCCCCEECTTSST
T ss_pred             -ccCeecCCCCcCcc---ccccCCCcccCEEECCCCccCccChhhh---------ccCccCCEEECCCCceeEEChhhhc
Confidence             37777777664332   2357778889999999988887755443         56788999999988777753  467


Q ss_pred             CCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      .+++|+.|+|++|... .+.            +..+..+++|+.|++++++
T Consensus       253 ~l~~L~~L~L~~N~l~-~~~------------~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLT-LLP------------HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TCTTCCEEECTTSCCC-CCC------------TTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCCCC-ccC------------hhHhccccCCCEEEcCCCC
Confidence            7889999999888643 221            1356678888888888754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=1.9e-20  Score=176.53  Aligned_cols=240  Identities=16%  Similarity=0.127  Sum_probs=178.2

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC-cccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~   91 (370)
                      ..+.++.++..++.+|..   -.+++++|++++|.   ..+..+.++++|++|++++|.++.++ ..+..+++|++|+++
T Consensus        55 ~~~~v~c~~~~l~~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SSCEEECCSSCCSSCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCcEEEECCCCcCccCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            357788888888888875   23689999999998   45678899999999999999998766 468899999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc-hhhhHhhhcCCCCCc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN-FHAFQRLLGSCMPQY  170 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~  170 (370)
                      +| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++.+. ...++. .....+. 
T Consensus       132 ~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~~~~l~~i~~-~~~~~l~-  196 (452)
T 3zyi_A          132 DN-WLTVIPSGAFEYLSKLRELWLRNN-PIESIP-----------SYAFNRVPSLMRLDLGELKKLEYISE-GAFEGLF-  196 (452)
T ss_dssp             SS-CCSBCCTTTSSSCTTCCEEECCSC-CCCEEC-----------TTTTTTCTTCCEEECCCCTTCCEECT-TTTTTCT-
T ss_pred             CC-cCCccChhhhcccCCCCEEECCCC-CcceeC-----------HhHHhcCCcccEEeCCCCCCccccCh-hhccCCC-
Confidence            99 677777777999999999999999 776433           3457788999999998743 222221 1111222 


Q ss_pred             cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--Cccc
Q 017525          171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLF  248 (370)
Q Consensus       171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~  248 (370)
                       +|+.|.+.++.-...   +.+..+++|+.|++++|.++.+....+         ..+++|++|++++|+++.+  ..+.
T Consensus       197 -~L~~L~L~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          197 -NLKYLNLGMCNIKDM---PNLTPLVGLEELEMSGNHFPEIRPGSF---------HGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             -TCCEEECTTSCCSSC---CCCTTCTTCCEEECTTSCCSEECGGGG---------TTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             -CCCEEECCCCccccc---ccccccccccEEECcCCcCcccCcccc---------cCccCCCEEEeCCCcCceECHHHhc
Confidence             367777766543322   357778888899998888887755443         5678889999988877765  3467


Q ss_pred             CCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      .+++|+.|+|++|.. +.+.            +..+..+++|+.|++++++
T Consensus       264 ~l~~L~~L~L~~N~l-~~~~------------~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          264 GLASLVELNLAHNNL-SSLP------------HDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TCTTCCEEECCSSCC-SCCC------------TTSSTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCcC-CccC------------hHHhccccCCCEEEccCCC
Confidence            788899999988864 3331            1356678888888888753

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=7.7e-20  Score=172.01  Aligned_cols=170  Identities=23%  Similarity=0.228  Sum_probs=90.4

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      |.++.+|..  .++|+.|++++|.++.+|..    +++|++|++++|.  .++..   .++|++|++++|.++.+| .++
T Consensus        81 ~~l~~lp~~--~~~L~~L~l~~n~l~~lp~~----~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~  150 (454)
T 1jl5_A           81 LGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQ  150 (454)
T ss_dssp             SCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCT
T ss_pred             CccccCCCC--cCCCCEEEccCCcCCccccc----cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccC
Confidence            455555552  36777777777777666542    3566666666665  33221   146666666666666666 466


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      .+++|++|++++| .+..+|..    ..+|++|++++| .+..+             ..+..+++|+.+++++|.+..++
T Consensus       151 ~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~~l-------------~~~~~l~~L~~L~l~~N~l~~l~  211 (454)
T 1jl5_A          151 NSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLEEL-------------PELQNLPFLTAIYADNNSLKKLP  211 (454)
T ss_dssp             TCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSSC-------------CCCTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCCcC-------------ccccCCCCCCEEECCCCcCCcCC
Confidence            6666666666666 33444432    235666666666 44421             13455556666666655544332


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI  211 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  211 (370)
                      ...      . .++.+.+.++.-. .  ++.+..+++|++|++++|.++.+
T Consensus       212 ~~~------~-~L~~L~l~~n~l~-~--lp~~~~l~~L~~L~l~~N~l~~l  252 (454)
T 1jl5_A          212 DLP------L-SLESIVAGNNILE-E--LPELQNLPFLTTIYADNNLLKTL  252 (454)
T ss_dssp             CCC------T-TCCEEECCSSCCS-S--CCCCTTCTTCCEEECCSSCCSSC
T ss_pred             CCc------C-cccEEECcCCcCC-c--ccccCCCCCCCEEECCCCcCCcc
Confidence            211      1 3555555544322 1  12344555555555555555443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.84  E-value=3.3e-20  Score=174.53  Aligned_cols=170  Identities=19%  Similarity=0.213  Sum_probs=110.4

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      |.++.++..  .++|++|++++|.++.+|.  +.++++|++|++++|.  .+|..+   .+|++|++++|.++.+| .++
T Consensus       121 n~l~~l~~~--~~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~  192 (454)
T 1jl5_A          121 NNLKALSDL--PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQ  192 (454)
T ss_dssp             SCCSCCCSC--CTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCT
T ss_pred             CccCcccCC--CCCCCEEECcCCCCCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-ccc
Confidence            444444432  2688999999988888873  7888999999999887  555433   48888888888888777 578


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      .+++|+.|++++| .+..+|..    .++|++|++++| .+..++             .+..+++|+.++++++....++
T Consensus       193 ~l~~L~~L~l~~N-~l~~l~~~----~~~L~~L~l~~n-~l~~lp-------------~~~~l~~L~~L~l~~N~l~~l~  253 (454)
T 1jl5_A          193 NLPFLTAIYADNN-SLKKLPDL----PLSLESIVAGNN-ILEELP-------------ELQNLPFLTTIYADNNLLKTLP  253 (454)
T ss_dssp             TCTTCCEEECCSS-CCSSCCCC----CTTCCEEECCSS-CCSSCC-------------CCTTCTTCCEEECCSSCCSSCC
T ss_pred             CCCCCCEEECCCC-cCCcCCCC----cCcccEEECcCC-cCCccc-------------ccCCCCCCCEEECCCCcCCccc
Confidence            8888888888887 44445442    257888888877 665322             2556777777777777665543


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEI  211 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  211 (370)
                      ...      . .++.+.+.++.-....   .  .+++|+.|++++|.++.+
T Consensus       254 ~~~------~-~L~~L~l~~N~l~~l~---~--~~~~L~~L~ls~N~l~~l  292 (454)
T 1jl5_A          254 DLP------P-SLEALNVRDNYLTDLP---E--LPQSLTFLDVSENIFSGL  292 (454)
T ss_dssp             SCC------T-TCCEEECCSSCCSCCC---C--CCTTCCEEECCSSCCSEE
T ss_pred             ccc------c-ccCEEECCCCcccccC---c--ccCcCCEEECcCCccCcc
Confidence            211      1 3566666554322111   1  124566666666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=7e-21  Score=180.81  Aligned_cols=238  Identities=15%  Similarity=0.136  Sum_probs=180.4

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..+++|+.|++++|.++.+++..+..+++|++|++++|.  ..++ +..+++|++|++++|.++.+|..    ++|+.|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~  105 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH  105 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence            345699999999999999887779999999999999998  3443 88999999999999999877643    8999999


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH--hhh-cCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLL-GSC  166 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~-~~~  166 (370)
                      +++| .+..++.   ..+++|+.|++++| .+..           .....+..+++|+.|++++|.+....  .+. ...
T Consensus       106 L~~N-~l~~~~~---~~l~~L~~L~L~~N-~l~~-----------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~  169 (487)
T 3oja_A          106 AANN-NISRVSC---SRGQGKKNIYLANN-KITM-----------LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD  169 (487)
T ss_dssp             CCSS-CCCCEEE---CCCSSCEEEECCSS-CCCS-----------GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred             CcCC-cCCCCCc---cccCCCCEEECCCC-CCCC-----------CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCC
Confidence            9999 4444443   34688999999999 7763           22445677899999999998776532  222 222


Q ss_pred             CCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-
Q 017525          167 MPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-  245 (370)
Q Consensus       167 ~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-  245 (370)
                           .|+.|+++++.-...   .....+++|++|++++|.++.++..+          ..+++|+.|++++|.++.++ 
T Consensus       170 -----~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          170 -----TLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEF----------QSAAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             -----TCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGG----------GGGTTCSEEECTTSCCCEECT
T ss_pred             -----cccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhH----------cCCCCccEEEecCCcCcccch
Confidence                 377777777653322   24556889999999999998876554          56889999999999888765 


Q ss_pred             cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccc
Q 017525          246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKN  300 (370)
Q Consensus       246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  300 (370)
                      .+..+++|+.|++++|......+            +..+..++.|+.+.+..+..
T Consensus       232 ~l~~l~~L~~L~l~~N~l~c~~~------------~~~~~~l~~L~~l~~~~~~~  274 (487)
T 3oja_A          232 ALRFSQNLEHFDLRGNGFHCGTL------------RDFFSKNQRVQTVAKQTVKK  274 (487)
T ss_dssp             TCCCCTTCCEEECTTCCBCHHHH------------HHHHTTCHHHHHHHHHHHHH
T ss_pred             hhccCCCCCEEEcCCCCCcCcch------------HHHHHhCCCCcEEecccccc
Confidence            46778899999999988652221            23566778888888865443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=2.3e-20  Score=166.76  Aligned_cols=213  Identities=21%  Similarity=0.235  Sum_probs=168.5

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCC---ChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRV---NSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES   74 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~   74 (370)
                      +|.++.+|..  .++++|+.|++++|.++.+   +.. +..+++|++|++++|.  .+|..+..+++|++|++++|.++.
T Consensus        37 ~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~  115 (306)
T 2z66_A           37 SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ  115 (306)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred             CCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc
Confidence            5778889885  6899999999999988755   344 6789999999999999  778888999999999999999987


Q ss_pred             cCc--ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525           75 LPI--EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT  152 (370)
Q Consensus        75 lp~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  152 (370)
                      ++.  .+..+++|++|++++|. +...+...+.++++|++|++++| .+..          ...+..+..+++|+.|+++
T Consensus       116 ~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~----------~~~~~~~~~l~~L~~L~Ls  183 (306)
T 2z66_A          116 MSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGN-SFQE----------NFLPDIFTELRNLTFLDLS  183 (306)
T ss_dssp             STTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTC-EEGG----------GEECSCCTTCTTCCEEECT
T ss_pred             cccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCC-cccc----------ccchhHHhhCcCCCEEECC
Confidence            764  68899999999999994 44444444899999999999999 5542          0134456777888888877


Q ss_pred             ecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525          153 LNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK  232 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  232 (370)
                      ++.+...                            ....+..+++|++|++++|.++.++...+         ..+++|+
T Consensus       184 ~n~l~~~----------------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~  226 (306)
T 2z66_A          184 QCQLEQL----------------------------SPTAFNSLSSLQVLNMSHNNFFSLDTFPY---------KCLNSLQ  226 (306)
T ss_dssp             TSCCCEE----------------------------CTTTTTTCTTCCEEECTTSCCSBCCSGGG---------TTCTTCC
T ss_pred             CCCcCCc----------------------------CHHHhcCCCCCCEEECCCCccCccChhhc---------cCcccCC
Confidence            6643211                            01246678899999999999988765333         5689999


Q ss_pred             EEEEeccccccc--CcccCCC-CccEEeeccCcch
Q 017525          233 NVYISRSKFRHA--TWLFLAP-NLKRVEIDNCQDM  264 (370)
Q Consensus       233 ~L~l~~~~l~~~--~~l~~l~-~L~~L~L~~~~~~  264 (370)
                      +|++++|++++.  ..+..++ +|+.|++++|...
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            999999988764  3466775 8999999998753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=2.5e-21  Score=173.56  Aligned_cols=241  Identities=15%  Similarity=0.073  Sum_probs=152.5

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhh-------ccccCCEEeccCCccc-ccCccc-
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEIS-------KVVSLQHLDLSHSRIE-SLPIEF-   79 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~-------~l~~L~~L~l~~~~l~-~lp~~~-   79 (370)
                      ..++|+.|++++|.+ .+|..+...   |++|+++++.    .+|..+.       ++++|++|++++|+++ .+|..+ 
T Consensus        41 ~~~~L~~l~l~~n~l-~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE-ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEECTTHHHHCCTT-CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             cCCCceeEeeccccc-ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            455677777777777 666653332   6777777766    3454444       5777888888887776 566654 


Q ss_pred             -ccCCcccEEeccCcccccccCcccccCC-----CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEe
Q 017525           80 -KCLVNLKCLNLEYTYGISRIPPKVISNL-----KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITL  153 (370)
Q Consensus        80 -~~l~~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~  153 (370)
                       +.+++|++|++++| .+...|.. ++++     ++|++|++++| .+..+           ....+..+++|+.|++++
T Consensus       117 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N-~l~~~-----------~~~~~~~l~~L~~L~Ls~  182 (312)
T 1wwl_A          117 EATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQA-HSLNF-----------SCEQVRVFPALSTLDLSD  182 (312)
T ss_dssp             SCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESC-SCCCC-----------CTTTCCCCSSCCEEECCS
T ss_pred             HhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCC-CCccc-----------hHHHhccCCCCCEEECCC
Confidence             67778888888777 34444533 5555     77888888777 55532           234566777777888777


Q ss_pred             cchhhh-HhhhcC--CCCCccccCcEEecCcCCCCccc--cccccccCCCcEEEEecCCccccee-ccCCCccccccccc
Q 017525          154 NNFHAF-QRLLGS--CMPQYVSTPSLCLSHFNNSKSLG--VFSLASLRHLQTLQLTYNDLDEIKI-DNGGEVKRVLEISG  227 (370)
Q Consensus       154 ~~~~~~-~~~~~~--~~~~~l~L~~l~l~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~~  227 (370)
                      |...+. ......  ..+.  +|+.+.+.++.-.....  ...+..+++|++|++++|.++.... ...         ..
T Consensus       183 N~l~~~~~~~~~~~~~~l~--~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~  251 (312)
T 1wwl_A          183 NPELGERGLISALCPLKFP--TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC---------DW  251 (312)
T ss_dssp             CTTCHHHHHHHHSCTTSCT--TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC---------CC
T ss_pred             CCcCcchHHHHHHHhccCC--CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh---------hh
Confidence            764331 111111  2222  36677776654321111  1233466889999999888877542 111         34


Q ss_pred             cccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          228 FHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       228 ~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                      +++|++|++++|+++.++.... ++|+.|++++|.. +.+             + .+..+++|+.|+++++
T Consensus       252 l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l-~~~-------------p-~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL-DRN-------------P-SPDELPQVGNLSLKGN  306 (312)
T ss_dssp             CTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC-CSC-------------C-CTTTSCEEEEEECTTC
T ss_pred             cCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC-CCC-------------h-hHhhCCCCCEEeccCC
Confidence            6889999999888877653222 7889999988864 222             1 3667888999988886

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=5.2e-20  Score=164.56  Aligned_cols=190  Identities=21%  Similarity=0.245  Sum_probs=131.0

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      .++++|+.|++++|.++.++.  +..+++|++|++++|.  .++. +..+++|++|++++|.++.++ .+..+++|+.|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~  113 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLD  113 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEE
T ss_pred             HHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEE
Confidence            456777777777777777653  6777777777777777  4444 777777777777777777665 466777777777


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +++| .+..++.  +.++++|++|++++| .+..++             .+..+++|+.|+++.+.+..+          
T Consensus       114 l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~----------  166 (308)
T 1h6u_A          114 LTST-QITDVTP--LAGLSNLQVLYLDLN-QITNIS-------------PLAGLTNLQYLSIGNAQVSDL----------  166 (308)
T ss_dssp             CTTS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-------------GGGGCTTCCEEECCSSCCCCC----------
T ss_pred             CCCC-CCCCchh--hcCCCCCCEEECCCC-ccCcCc-------------cccCCCCccEEEccCCcCCCC----------
Confidence            7777 4444443  677777777777777 554322             155566666666655432211          


Q ss_pred             ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccC
Q 017525          170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFL  249 (370)
Q Consensus       170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~  249 (370)
                                          ..+..+++|+.|++++|.++.++. +          ..+++|++|++++|++++++.+..
T Consensus       167 --------------------~~l~~l~~L~~L~l~~n~l~~~~~-l----------~~l~~L~~L~L~~N~l~~~~~l~~  215 (308)
T 1h6u_A          167 --------------------TPLANLSKLTTLKADDNKISDISP-L----------ASLPNLIEVHLKNNQISDVSPLAN  215 (308)
T ss_dssp             --------------------GGGTTCTTCCEEECCSSCCCCCGG-G----------GGCTTCCEEECTTSCCCBCGGGTT
T ss_pred             --------------------hhhcCCCCCCEEECCCCccCcChh-h----------cCCCCCCEEEccCCccCccccccC
Confidence                                125566788888888888776643 1          567888888888888877777778


Q ss_pred             CCCccEEeeccCcc
Q 017525          250 APNLKRVEIDNCQD  263 (370)
Q Consensus       250 l~~L~~L~L~~~~~  263 (370)
                      +++|+.|++++|..
T Consensus       216 l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          216 TSNLFIVTLTNQTI  229 (308)
T ss_dssp             CTTCCEEEEEEEEE
T ss_pred             CCCCCEEEccCCee
Confidence            88888888888764

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.83  E-value=6.6e-20  Score=162.10  Aligned_cols=218  Identities=18%  Similarity=0.158  Sum_probs=166.4

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~   92 (370)
                      -++++.+++.++.+|..   ..++|++|+++++.  .+ +..+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus        13 ~~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             SCEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CeEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            36889998889988864   35799999999998  44 45688999999999999999876 56788999999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS  172 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  172 (370)
                      |..++.++...+.++++|++|++++| .+..+           ....+..+++|+.|+++.+.+..+             
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-----------~~~~~~~l~~L~~L~l~~n~l~~~-------------  144 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRC-GLQEL-----------GPGLFRGLAALQYLYLQDNALQAL-------------  144 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTS-CCCCC-----------CTTTTTTCTTCCEEECCSSCCCCC-------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCC-cCCEE-----------CHhHhhCCcCCCEEECCCCccccc-------------
Confidence            96577775555899999999999999 66532           234566778888887776643211             


Q ss_pred             cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCC
Q 017525          173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLA  250 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l  250 (370)
                                     ....+..+++|++|++++|.++.++...+         ..+++|++|++++|+++++  ..+..+
T Consensus       145 ---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l  200 (285)
T 1ozn_A          145 ---------------PDDTFRDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDL  200 (285)
T ss_dssp             ---------------CTTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             ---------------CHhHhccCCCccEEECCCCcccccCHHHh---------cCccccCEEECCCCcccccCHhHccCc
Confidence                           01246677889999999998887765433         5678999999999977765  457788


Q ss_pred             CCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          251 PNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       251 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                      ++|+.|++++|.... +.            +..+..+++|+.|++++++
T Consensus       201 ~~L~~L~l~~n~l~~-~~------------~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          201 GRLMTLYLFANNLSA-LP------------TEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             TTCCEEECCSSCCSC-CC------------HHHHTTCTTCCEEECCSSC
T ss_pred             ccccEeeCCCCcCCc-CC------------HHHcccCcccCEEeccCCC
Confidence            999999999886432 21            1246678888888888764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.83  E-value=6.8e-20  Score=161.26  Aligned_cols=213  Identities=19%  Similarity=0.160  Sum_probs=156.7

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccC-cc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLP-IE   78 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp-~~   78 (370)
                      .+++.+|.. -.++|+.|++++|.++.++...+.++++|++|++++|.  . .+..+..+++|++|++++|.++.++ ..
T Consensus        17 ~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   95 (276)
T 2z62_A           17 LNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA   95 (276)
T ss_dssp             SCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred             CCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh
Confidence            345666664 23679999999999998887668899999999999998  3 3457888999999999999998766 46


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      +..+++|++|++++| .+..++...++++++|++|++++| .+..+          ..+..+..+++|+.|++++|.+..
T Consensus        96 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~----------~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           96 FSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSF----------KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCC----------CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-cccee----------cCchhhccCCCCCEEECCCCCCCc
Confidence            888999999999998 455555544889999999999999 66531          134566778888888888775432


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS  237 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (370)
                      +..                         ..+..+..++.|. .|++++|.++.++...+          ...+|++|+++
T Consensus       164 ~~~-------------------------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~----------~~~~L~~L~L~  208 (276)
T 2z62_A          164 IYC-------------------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF----------KEIRLKELALD  208 (276)
T ss_dssp             ECG-------------------------GGGHHHHTCTTCCEEEECCSSCCCEECTTSS----------CSCCEEEEECC
T ss_pred             CCH-------------------------HHhhhhhhccccceeeecCCCcccccCcccc----------CCCcccEEECC
Confidence            210                         0011222333343 78899998887765443          23489999999


Q ss_pred             cccccccCc--ccCCCCccEEeeccCcc
Q 017525          238 RSKFRHATW--LFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       238 ~~~l~~~~~--l~~l~~L~~L~L~~~~~  263 (370)
                      +|+++.++.  +..+++|+.|++++|+.
T Consensus       209 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~  236 (276)
T 2z62_A          209 TNQLKSVPDGIFDRLTSLQKIWLHTNPW  236 (276)
T ss_dssp             SSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred             CCceeecCHhHhcccccccEEEccCCcc
Confidence            998887653  56789999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.3e-19  Score=159.20  Aligned_cols=222  Identities=16%  Similarity=0.151  Sum_probs=128.7

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~   93 (370)
                      ..+..+++..+.+.....  ...+++|+.|+++++. .....+..+++|++|++++|.++.++ .++.+++|++|++++|
T Consensus        19 ~~l~~l~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n   95 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN   95 (272)
T ss_dssp             HHHHHHHHTCSCTTSEEC--HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS
T ss_pred             HHHHHHHhcCcccccccc--cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC
Confidence            334444454444443322  3556666666666665 33334556666666666666665543 4556666666666666


Q ss_pred             ccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcccc
Q 017525           94 YGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST  173 (370)
Q Consensus        94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L  173 (370)
                       .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++.|.+..++             
T Consensus        96 -~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~-------------  149 (272)
T 3rfs_A           96 -QLQSLPNGVFDKLTNLKELVLVEN-QLQSLP-----------DGVFDKLTNLTYLNLAHNQLQSLP-------------  149 (272)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECTTS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             -ccCccChhHhcCCcCCCEEECCCC-cCCccC-----------HHHhccCCCCCEEECCCCccCccC-------------
Confidence             344444444566666666666666 444221           222444555555555544321100             


Q ss_pred             CcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCC
Q 017525          174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAP  251 (370)
Q Consensus       174 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~  251 (370)
                                     ...+..+++|++|++++|.++.++...+         ..+++|++|++++|++++++.  +..++
T Consensus       150 ---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~  205 (272)
T 3rfs_A          150 ---------------KGVFDKLTNLTELDLSYNQLQSLPEGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLT  205 (272)
T ss_dssp             ---------------TTTTTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ---------------HHHhccCccCCEEECCCCCcCccCHHHh---------cCCccCCEEECCCCcCCccCHHHHhCCc
Confidence                           0134566788888888888776654433         457888888888887777643  56788


Q ss_pred             CccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCc
Q 017525          252 NLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKAL  309 (370)
Q Consensus       252 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~  309 (370)
                      +|+.|++++|..                    .+.+|.|+.|.++.+.--..++...+
T Consensus       206 ~L~~L~l~~N~~--------------------~~~~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          206 SLQYIWLHDNPW--------------------DCTCPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             TCCEEECCSSCB--------------------CCCTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CCCEEEccCCCc--------------------cccCcHHHHHHHHHHhCCCcccCccc
Confidence            888888888752                    34567788887776643344544433

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.83  E-value=1.2e-19  Score=176.18  Aligned_cols=250  Identities=17%  Similarity=0.137  Sum_probs=194.1

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~   92 (370)
                      .++++|+++++.++.+|..+ .  ++|++|++++|.  .+|.   .+++|++|++++|.++.+|.   .+++|++|++++
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l-~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~  110 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCL-P--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS  110 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCC-C--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS
T ss_pred             CCCcEEEecCCCcCccChhh-C--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC
Confidence            46899999999999998863 2  899999999998  6665   57899999999999999987   789999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS  172 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  172 (370)
                      | .+..+|.    .+++|+.|++++| .+..++         .      .+++|+.|+++.|.+..++..      .. +
T Consensus       111 N-~l~~l~~----~l~~L~~L~L~~N-~l~~lp---------~------~l~~L~~L~Ls~N~l~~l~~~------~~-~  162 (622)
T 3g06_A          111 N-PLTHLPA----LPSGLCKLWIFGN-QLTSLP---------V------LPPGLQELSVSDNQLASLPAL------PS-E  162 (622)
T ss_dssp             C-CCCCCCC----CCTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCCCCC------CT-T
T ss_pred             C-cCCCCCC----CCCCcCEEECCCC-CCCcCC---------C------CCCCCCEEECcCCcCCCcCCc------cC-C
Confidence            8 5666665    5788999999999 777544         1      238899999999987665431      11 4


Q ss_pred             cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCC
Q 017525          173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPN  252 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~  252 (370)
                      |+.|.+.++.-.. .  +  ..+++|+.|++++|.++.++             ..+++|+.|++++|+++.++.  .+++
T Consensus       163 L~~L~L~~N~l~~-l--~--~~~~~L~~L~Ls~N~l~~l~-------------~~~~~L~~L~L~~N~l~~l~~--~~~~  222 (622)
T 3g06_A          163 LCKLWAYNNQLTS-L--P--MLPSGLQELSVSDNQLASLP-------------TLPSELYKLWAYNNRLTSLPA--LPSG  222 (622)
T ss_dssp             CCEEECCSSCCSC-C--C--CCCTTCCEEECCSSCCSCCC-------------CCCTTCCEEECCSSCCSSCCC--CCTT
T ss_pred             CCEEECCCCCCCC-C--c--ccCCCCcEEECCCCCCCCCC-------------CccchhhEEECcCCcccccCC--CCCC
Confidence            7777776654322 2  1  44689999999999998764             346899999999998888764  3689


Q ss_pred             ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      |+.|++++|.. +.+             +   ..+++|+.|+++++ .++.++.   .+++|+.|++++| +++.+|...
T Consensus       223 L~~L~Ls~N~L-~~l-------------p---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l  280 (622)
T 3g06_A          223 LKELIVSGNRL-TSL-------------P---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESL  280 (622)
T ss_dssp             CCEEECCSSCC-SCC-------------C---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGG
T ss_pred             CCEEEccCCcc-CcC-------------C---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHH
Confidence            99999999864 212             1   46689999999998 6777765   5789999999987 688888655


Q ss_pred             CCCCcceeEEec
Q 017525          333 NRGLERKIVIKG  344 (370)
Q Consensus       333 ~~~~~~~~~~~~  344 (370)
                      ... ..+..+..
T Consensus       281 ~~l-~~L~~L~L  291 (622)
T 3g06_A          281 IHL-SSETTVNL  291 (622)
T ss_dssp             GGS-CTTCEEEC
T ss_pred             hhc-cccCEEEe
Confidence            444 34454443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.82  E-value=5.5e-21  Score=171.32  Aligned_cols=247  Identities=18%  Similarity=0.168  Sum_probs=166.0

Q ss_pred             HhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCccc--ccCcccc-------cCCcccEEeccCcccccccCcccc
Q 017525           35 FQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIE--SLPIEFK-------CLVNLKCLNLEYTYGISRIPPKVI  104 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~--~lp~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~  104 (370)
                      ++..++|++|+++++. .+|..+...  |++|++++|.++  .+|..+.       .+++|++|++++|...+.+|...+
T Consensus        39 ~~~~~~L~~l~l~~n~l~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTEADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEEECTTHHHHCCTTCCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             EccCCCceeEeecccccccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            5667888999999888 777766554  899999999885  4565554       799999999999966667777632


Q ss_pred             -cCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC--CCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCc
Q 017525          105 -SNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL--EHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHF  181 (370)
Q Consensus       105 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~  181 (370)
                       .++++|++|++++| .+...+         ..+..+...  ++|+.|++++|.+..+..- ....+.  +|+.++++++
T Consensus       117 ~~~l~~L~~L~Ls~N-~l~~~~---------~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~--~L~~L~Ls~N  183 (312)
T 1wwl_A          117 EATGPDLNILNLRNV-SWATRD---------AWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFP--ALSTLDLSDN  183 (312)
T ss_dssp             SCCSCCCSEEEEESC-BCSSSS---------SHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCS--SCCEEECCSC
T ss_pred             HhcCCCccEEEccCC-CCcchh---------HHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCC--CCCEEECCCC
Confidence             89999999999999 776332         233333222  8999999999987654311 111222  3777777766


Q ss_pred             CCCCccc-ccc--ccccCCCcEEEEecCCccccee---ccCCCccccccccccccCcEEEEeccccccc---CcccCCCC
Q 017525          182 NNSKSLG-VFS--LASLRHLQTLQLTYNDLDEIKI---DNGGEVKRVLEISGFHSLKNVYISRSKFRHA---TWLFLAPN  252 (370)
Q Consensus       182 ~~~~~~~-~~~--l~~l~~L~~L~l~~~~l~~~~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~l~~l~~  252 (370)
                      .-..... ...  +..+++|++|++++|.++.++.   ..+         ..+++|++|++++|++++.   +.+..+++
T Consensus       184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~---------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  254 (312)
T 1wwl_A          184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA---------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQ  254 (312)
T ss_dssp             TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH---------HTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred             CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH---------hcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence            5332211 112  2677788888888887774421   111         3457888888888877663   23445678


Q ss_pred             ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCC
Q 017525          253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      |+.|++++|... .+             +..+.  ++|+.|+++++ .++.++. ...+++|+.|++++++
T Consensus       255 L~~L~Ls~N~l~-~i-------------p~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          255 LNSLNLSFTGLK-QV-------------PKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCEEECTTSCCS-SC-------------CSSCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             CCEEECCCCccC-hh-------------hhhcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            888888887643 22             22333  78888888877 5666643 5567778888777653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.5e-19  Score=171.72  Aligned_cols=186  Identities=17%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             CCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEE
Q 017525           38 MASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLR  114 (370)
Q Consensus        38 l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~  114 (370)
                      +++|++|++++|.   ..|..+..+++|++|++++|.++..++ ++.+++|++|++++| .+..++     ..++|++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-----~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL-----VGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEE-----ECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCC-----CCCCcCEEE
Confidence            3489999999998   445788999999999999999886654 889999999999998 455443     348899999


Q ss_pred             ccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHh--hhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525          115 MYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQR--LLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL  192 (370)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~--~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l  192 (370)
                      +++| .+..++              ...+++|+.|+++.|.+.....  +....     +|+.|+++++.-.. .....+
T Consensus       106 L~~N-~l~~~~--------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~-~~~~~l  164 (487)
T 3oja_A          106 AANN-NISRVS--------------CSRGQGKKNIYLANNKITMLRDLDEGCRS-----RVQYLDLKLNEIDT-VNFAEL  164 (487)
T ss_dssp             CCSS-CCCCEE--------------ECCCSSCEEEECCSSCCCSGGGBCGGGGS-----SEEEEECTTSCCCE-EEGGGG
T ss_pred             CcCC-cCCCCC--------------ccccCCCCEEECCCCCCCCCCchhhcCCC-----CCCEEECCCCCCCC-cChHHH
Confidence            9999 776432              1235778888888776554321  11111     24444444432211 111222


Q ss_pred             c-ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc-CcccCCCCccEEeeccCc
Q 017525          193 A-SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA-TWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       193 ~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~l~~l~~L~~L~L~~~~  262 (370)
                      . .+++|+.|++++|.++.++..           ..+++|++|++++|+++++ +.+..+++|+.|+|++|.
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          165 AASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             GGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             hhhCCcccEEecCCCcccccccc-----------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            2 445555555555555544211           2345555555555555443 234445555555555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.80  E-value=7.7e-19  Score=153.98  Aligned_cols=196  Identities=19%  Similarity=0.236  Sum_probs=150.4

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-cccCCcccEEec
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNL   90 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l   90 (370)
                      ...+.++++++.++.+|..+   .+++++|+++++.  .++ ..+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            46789999999999888752   2689999999998  444 4788899999999999999888875 478999999999


Q ss_pred             cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCc
Q 017525           91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQY  170 (370)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  170 (370)
                      ++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++++.+..++          
T Consensus        93 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~l~~L~~L~Ls~n~l~~~~----------  149 (270)
T 2o6q_A           93 TDN-KLQALPIGVFDQLVNLAELRLDRN-QLKSLP-----------PRVFDSLTKLTYLSLGYNELQSLP----------  149 (270)
T ss_dssp             CSS-CCCCCCTTTTTTCSSCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC----------
T ss_pred             CCC-cCCcCCHhHcccccCCCEEECCCC-ccCeeC-----------HHHhCcCcCCCEEECCCCcCCccC----------
Confidence            998 566777666889999999999998 665332           334567778888877766432110          


Q ss_pred             cccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--cc
Q 017525          171 VSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LF  248 (370)
Q Consensus       171 l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~  248 (370)
                                        ...+..+++|++|++++|.++.++...+         ..+++|++|++++|+++.++.  +.
T Consensus       150 ------------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~  202 (270)
T 2o6q_A          150 ------------------KGVFDKLTSLKELRLYNNQLKRVPEGAF---------DKLTELKTLKLDNNQLKRVPEGAFD  202 (270)
T ss_dssp             ------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ------------------HhHccCCcccceeEecCCcCcEeChhHh---------ccCCCcCEEECCCCcCCcCCHHHhc
Confidence                              1135667889999999988887765433         467889999999998877653  66


Q ss_pred             CCCCccEEeeccCcc
Q 017525          249 LAPNLKRVEIDNCQD  263 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~  263 (370)
                      .+++|+.|++++|+.
T Consensus       203 ~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          203 SLEKLKMLQLQENPW  217 (270)
T ss_dssp             TCTTCCEEECCSSCB
T ss_pred             cccCCCEEEecCCCe
Confidence            788999999988763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.80  E-value=8.6e-19  Score=155.17  Aligned_cols=197  Identities=17%  Similarity=0.162  Sum_probs=157.0

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcccccCCcccEE
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCL   88 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L   88 (370)
                      .++++++.++++++.++.+|..+   .+++++|++++|.   ..+..+..+++|++|++++|.++.++.. +.+++|+.|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence            57888999999999999998763   3789999999998   4467789999999999999999887764 789999999


Q ss_pred             eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCC
Q 017525           89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMP  168 (370)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~  168 (370)
                      ++++| .+..+|.. +.++++|++|++++| .++.++           ...+..+++|+.|+++.|.+..++        
T Consensus        83 ~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N-~l~~l~-----------~~~~~~l~~L~~L~L~~N~l~~~~--------  140 (290)
T 1p9a_G           83 DLSHN-QLQSLPLL-GQTLPALTVLDVSFN-RLTSLP-----------LGALRGLGELQELYLKGNELKTLP--------  140 (290)
T ss_dssp             ECCSS-CCSSCCCC-TTTCTTCCEEECCSS-CCCCCC-----------SSTTTTCTTCCEEECTTSCCCCCC--------
T ss_pred             ECCCC-cCCcCchh-hccCCCCCEEECCCC-cCcccC-----------HHHHcCCCCCCEEECCCCCCCccC--------
Confidence            99998 66778875 889999999999999 776432           345677788888877766532210        


Q ss_pred             CccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-cc
Q 017525          169 QYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WL  247 (370)
Q Consensus       169 ~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l  247 (370)
                                          ...+..+++|+.|++++|.++.++...+         ..+++|++|++++|+++.++ .+
T Consensus       141 --------------------~~~~~~l~~L~~L~L~~N~l~~l~~~~~---------~~l~~L~~L~L~~N~l~~ip~~~  191 (290)
T 1p9a_G          141 --------------------PGLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGF  191 (290)
T ss_dssp             --------------------TTTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTT
T ss_pred             --------------------hhhcccccCCCEEECCCCcCCccCHHHh---------cCcCCCCEEECCCCcCCccChhh
Confidence                                1245677899999999999998876544         56889999999999888765 46


Q ss_pred             cCCCCccEEeeccCcc
Q 017525          248 FLAPNLKRVEIDNCQD  263 (370)
Q Consensus       248 ~~l~~L~~L~L~~~~~  263 (370)
                      ...++|+.|+|++|+.
T Consensus       192 ~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          192 FGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTCCCSEEECCSCCB
T ss_pred             cccccCCeEEeCCCCc
Confidence            6678899999998764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=2.3e-18  Score=151.00  Aligned_cols=190  Identities=22%  Similarity=0.307  Sum_probs=151.8

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc-
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      ++.++.+|.. -.++++.|++++|.++.++...+.++++|++|++++|.  .++.. +..+++|++|++++|.++.+|. 
T Consensus        25 ~~~l~~ip~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~  103 (270)
T 2o6q_A           25 SKKLTAIPSN-IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIG  103 (270)
T ss_dssp             TSCCSSCCSC-CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCccCCC-CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHh
Confidence            4567777764 23789999999999999988778999999999999998  55544 5789999999999999998876 


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      .+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++.+.+.
T Consensus       104 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A          104 VFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN-ELQSLP-----------KGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             TTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCS
T ss_pred             HcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC-cCCccC-----------HhHccCCcccceeEecCCcCc
Confidence            4688999999999998 566676666899999999999999 776433           334667788888888776432


Q ss_pred             hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEe
Q 017525          158 AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYIS  237 (370)
Q Consensus       158 ~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~  237 (370)
                      .++                            ...+..+++|++|++++|.++.++...+         ..+++|++|+++
T Consensus       171 ~~~----------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~  213 (270)
T 2o6q_A          171 RVP----------------------------EGAFDKLTELKTLKLDNNQLKRVPEGAF---------DSLEKLKMLQLQ  213 (270)
T ss_dssp             CCC----------------------------TTTTTTCTTCCEEECCSSCCSCCCTTTT---------TTCTTCCEEECC
T ss_pred             EeC----------------------------hhHhccCCCcCEEECCCCcCCcCCHHHh---------ccccCCCEEEec
Confidence            210                            1246678899999999999998876543         568999999999


Q ss_pred             ccccc
Q 017525          238 RSKFR  242 (370)
Q Consensus       238 ~~~l~  242 (370)
                      +|.+.
T Consensus       214 ~N~~~  218 (270)
T 2o6q_A          214 ENPWD  218 (270)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            98553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.78  E-value=6.3e-20  Score=173.34  Aligned_cols=293  Identities=19%  Similarity=0.170  Sum_probs=155.0

Q ss_pred             CCCCCCCEEecCCCcCCCC-ChHHHhcCC----CCcEEEccCCC-c------chhhhhccccCCEEeccCCccccc-Cc-
Q 017525           12 PVCPRLRTLFLSSNIFHRV-NSDFFQSMA----SLRVLKWSYSN-P------LLFEISKVVSLQHLDLSHSRIESL-PI-   77 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~-~~~~~~~l~----~L~~L~l~~~~-~------~~~~~~~l~~L~~L~l~~~~l~~l-p~-   77 (370)
                      ..+++|++|++++|.++.. +..++..++    +|++|++++|. .      ++..+..+++|++|++++|.++.. +. 
T Consensus        53 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~  132 (461)
T 1z7x_W           53 RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL  132 (461)
T ss_dssp             HTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH
T ss_pred             HhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHH
Confidence            4456666666666665532 222233444    46666666665 1      245556666666666666655311 11 


Q ss_pred             ---c-cccCCcccEEeccCcccccc----cCcccccCCCCCcEEEccccCCCccccccc---------------------
Q 017525           78 ---E-FKCLVNLKCLNLEYTYGISR----IPPKVISNLKILETLRMYECAALPQARDSI---------------------  128 (370)
Q Consensus        78 ---~-~~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---------------------  128 (370)
                         . ....++|++|++++|.....    ++. .+..+++|++|++++| .++......                     
T Consensus       133 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          133 LCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS-VLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH-HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             HHHHHhcCCCcceEEECCCCCCCHHHHHHHHH-HHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence               1 11234455555555522111    111 1334455555555554 332110000                     


Q ss_pred             -ccCCcchhhhhcccCCCccEEEEEecchhhhH--hhhc--CCCCCccccCcEEecCcCCCCcccc----ccccccCCCc
Q 017525          129 -LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ--RLLG--SCMPQYVSTPSLCLSHFNNSKSLGV----FSLASLRHLQ  199 (370)
Q Consensus       129 -~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~--~~~~--~~~~~~l~L~~l~l~~~~~~~~~~~----~~l~~l~~L~  199 (370)
                       ...........+..+++|+.++++++.+....  .+..  .....  .++.+++.++ .++..+.    ..+..+++|+
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS--RLRTLWIWEC-GITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC--CCCEEECTTS-CCCHHHHHHHHHHHHHCTTCC
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC--CceEEECcCC-CCCHHHHHHHHHHHhhCCCcc
Confidence             00000013444556778888888887654421  1111  00111  4777888776 3333221    2355578888


Q ss_pred             EEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCcchHHhhhcccc
Q 017525          200 TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQDMKEIIDSEKF  273 (370)
Q Consensus       200 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~~~~~~~~~~~~  273 (370)
                      +|++++|.+++.+...++....    ...++|++|++++|.+++.      .++..+++|++|++++|........ .  
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~----~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~--  360 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLL----EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR-E--  360 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHT----STTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH-H--
T ss_pred             eEECCCCCCchHHHHHHHHHhc----cCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH-H--
Confidence            8888888876554322211000    2346899999999877653      2345678999999999864332211 0  


Q ss_pred             CCCcccccCCcc-ccccccccccccccccc-----cccCCCccCCCcceEeecCCC
Q 017525          274 GEVPAEVMANLI-PFARLERLILEELKNLK-----TVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       274 ~~~~~~~~~~~~-~~p~L~~L~l~~~~~l~-----~i~~~~~~~~~L~~L~l~~c~  323 (370)
                            +...+. ..++|+.|++++| .++     .++.....+++|++|++++|+
T Consensus       361 ------l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          361 ------LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             ------HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ------HHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                  001111 2678999999988 455     343334458899999998873

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.78  E-value=6.6e-19  Score=151.55  Aligned_cols=202  Identities=17%  Similarity=0.220  Sum_probs=128.4

Q ss_pred             CCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCc-ccccCc-ccccCCcccEEeccCcccccccCc
Q 017525           27 FHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSR-IESLPI-EFKCLVNLKCLNLEYTYGISRIPP  101 (370)
Q Consensus        27 i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~  101 (370)
                      ++.+|.  +  -++|++|+++++.  .+| ..+.++++|++|++++|. ++.++. .+..+++|++|++++|..+..++.
T Consensus        23 l~~ip~--~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS--L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC--C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC--C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            555554  1  2267777777776  333 356677778888888775 776665 567778888888877225666665


Q ss_pred             ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCcc---EEEEEec-chhhhHhhhcCCCCCccccCcEE
Q 017525          102 KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLS---VFTITLN-NFHAFQRLLGSCMPQYVSTPSLC  177 (370)
Q Consensus       102 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~---~l~l~~~-~~~~~~~~~~~~~~~~l~L~~l~  177 (370)
                      ..+.++++|++|++++| .+..++         .    +..+++|+   .++++.+ .+..++                 
T Consensus        99 ~~f~~l~~L~~L~l~~n-~l~~lp---------~----~~~l~~L~~L~~L~l~~N~~l~~i~-----------------  147 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNT-GLKMFP---------D----LTKVYSTDIFFILEITDNPYMTSIP-----------------  147 (239)
T ss_dssp             TSEECCTTCCEEEEEEE-CCCSCC---------C----CTTCCBCCSEEEEEEESCTTCCEEC-----------------
T ss_pred             HHhCCCCCCCEEeCCCC-CCcccc---------c----cccccccccccEEECCCCcchhhcC-----------------
Confidence            55777888888888877 665333         1    34444454   7777766 322110                 


Q ss_pred             ecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccccC--cccCC-CC
Q 017525          178 LSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WLFLA-PN  252 (370)
Q Consensus       178 l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l~~l-~~  252 (370)
                                 ...+..+++|+ .|++++|.++.++...+         .. ++|++|++++| .++.++  .+..+ ++
T Consensus       148 -----------~~~~~~l~~L~~~L~l~~n~l~~i~~~~~---------~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~  206 (239)
T 2xwt_C          148 -----------VNAFQGLCNETLTLKLYNNGFTSVQGYAF---------NG-TKLDAVYLNKNKYLTVIDKDAFGGVYSG  206 (239)
T ss_dssp             -----------TTTTTTTBSSEEEEECCSCCCCEECTTTT---------TT-CEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred             -----------cccccchhcceeEEEcCCCCCcccCHhhc---------CC-CCCCEEEcCCCCCcccCCHHHhhccccC
Confidence                       11355667788 88888888776654432         22 67888888888 477663  35667 78


Q ss_pred             ccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccc
Q 017525          253 LKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKN  300 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  300 (370)
                      |+.|++++|.. +.+               ....+++|+.|.++++..
T Consensus       207 L~~L~l~~N~l-~~l---------------~~~~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          207 PSLLDVSQTSV-TAL---------------PSKGLEHLKELIARNTWT  238 (239)
T ss_dssp             CSEEECTTCCC-CCC---------------CCTTCTTCSEEECTTC--
T ss_pred             CcEEECCCCcc-ccC---------------ChhHhccCceeeccCccC
Confidence            88888888764 222               112677888888877654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.78  E-value=1.5e-18  Score=158.00  Aligned_cols=232  Identities=13%  Similarity=0.104  Sum_probs=172.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cch-hhhhccccCCE-EeccCCcccccC
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLL-FEISKVVSLQH-LDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~-~~~~~l~~L~~-L~l~~~~l~~lp   76 (370)
                      +++++++|... .++++.|++++|.|+.+++..|.++++|++|++++|.   .+| ..|.+++++++ +.+.+|+++.++
T Consensus        18 ~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           18 ESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             STTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            35688888752 4689999999999999998778999999999999997   344 45678888775 556678888775


Q ss_pred             c-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEec
Q 017525           77 I-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLN  154 (370)
Q Consensus        77 ~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~  154 (370)
                      . .+..+++|++|++++| .+..++...+....++..+++.++..+..++           ...+..+ ..++.++++.|
T Consensus        97 ~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~-----------~~~f~~~~~~l~~L~L~~N  164 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIE-----------RNSFVGLSFESVILWLNKN  164 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEEC-----------TTSSTTSBSSCEEEECCSS
T ss_pred             chhhhhcccccccccccc-ccccCCchhhcccchhhhhhhcccccccccc-----------ccchhhcchhhhhhccccc
Confidence            4 6788999999999998 5666665446667778888887653555433           2233344 46778888888


Q ss_pred             chhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEE
Q 017525          155 NFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNV  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L  234 (370)
                      .+..++....    ....+..+.+.++..++......+..+++|++|++++|.++.++.            ..+.+|+.|
T Consensus       165 ~i~~i~~~~f----~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~------------~~~~~L~~L  228 (350)
T 4ay9_X          165 GIQEIHNSAF----NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS------------YGLENLKKL  228 (350)
T ss_dssp             CCCEECTTSS----TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS------------SSCTTCCEE
T ss_pred             cccCCChhhc----cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh------------hhhccchHh
Confidence            8766543221    112577788877777666655567888999999999999888753            457888888


Q ss_pred             EEecc-cccccCcccCCCCccEEeeccCc
Q 017525          235 YISRS-KFRHATWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       235 ~l~~~-~l~~~~~l~~l~~L~~L~L~~~~  262 (370)
                      .+.++ +++.++.+..+++|+.+++.+..
T Consensus       229 ~~l~~~~l~~lP~l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          229 RARSTYNLKKLPTLEKLVALMEASLTYPS  257 (350)
T ss_dssp             ECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred             hhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence            88777 78888888889999999987643

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.77  E-value=3.1e-18  Score=151.63  Aligned_cols=188  Identities=22%  Similarity=0.258  Sum_probs=152.6

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      ++.++.+|.. -.++++.|++++|.++.+++..+.++++|++|++++|.  .++. ...+++|++|++++|.++.+|..+
T Consensus        19 ~~~l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~   96 (290)
T 1p9a_G           19 KRNLTALPPD-LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLG   96 (290)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCCCCcCCCC-CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCCcCchhh
Confidence            4678888875 24799999999999998877779999999999999999  4443 378999999999999999999989


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      ..+++|+.|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.|+++.|.+..+
T Consensus        97 ~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           97 QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLP-----------PGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCC-----------TTTTTTCTTCCEEECTTSCCSCC
T ss_pred             ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccC-----------hhhcccccCCCEEECCCCcCCcc
Confidence            99999999999999 667777666999999999999999 776433           34456778888888876653211


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +                            ...+..+++|+.|++++|.++.++..+          ...++|++|++.+|
T Consensus       164 ~----------------------------~~~~~~l~~L~~L~L~~N~l~~ip~~~----------~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          164 P----------------------------AGLLNGLENLDTLLLQENSLYTIPKGF----------FGSHLLPFAFLHGN  205 (290)
T ss_dssp             C----------------------------TTTTTTCTTCCEEECCSSCCCCCCTTT----------TTTCCCSEEECCSC
T ss_pred             C----------------------------HHHhcCcCCCCEEECCCCcCCccChhh----------cccccCCeEEeCCC
Confidence            1                            124567889999999999999887655          34578999999998


Q ss_pred             ccc
Q 017525          240 KFR  242 (370)
Q Consensus       240 ~l~  242 (370)
                      .+.
T Consensus       206 p~~  208 (290)
T 1p9a_G          206 PWL  208 (290)
T ss_dssp             CBC
T ss_pred             Ccc
Confidence            553

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.1e-18  Score=152.84  Aligned_cols=187  Identities=19%  Similarity=0.246  Sum_probs=124.5

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~   92 (370)
                      ..+..+.+..+.+..+..  ...+++|++|++++|.  .++ .+..+++|++|++++|.++.++. +..+++|+.|++++
T Consensus        24 ~~~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           24 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HHHHHHHhcCCCcccccc--hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCC
Confidence            334444555555554433  3567777777777776  333 46677777777777777776665 67777777777777


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS  172 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  172 (370)
                      | .+..++.  +.++++|++|++++| .+..             +..+..+++|+.|+++.|.+..+             
T Consensus       100 n-~l~~~~~--l~~l~~L~~L~L~~n-~i~~-------------~~~l~~l~~L~~L~l~~n~l~~~-------------  149 (291)
T 1h6t_A          100 N-KVKDLSS--LKDLKKLKSLSLEHN-GISD-------------INGLVHLPQLESLYLGNNKITDI-------------  149 (291)
T ss_dssp             S-CCCCGGG--GTTCTTCCEEECTTS-CCCC-------------CGGGGGCTTCCEEECCSSCCCCC-------------
T ss_pred             C-cCCCChh--hccCCCCCEEECCCC-cCCC-------------ChhhcCCCCCCEEEccCCcCCcc-------------
Confidence            7 4444443  677777777777777 5542             12355566666666665532211             


Q ss_pred             cCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCC
Q 017525          173 TPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPN  252 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~  252 (370)
                                       ..+..+++|+.|++++|.++.++. +          ..+++|++|++++|++++++.+..+++
T Consensus       150 -----------------~~l~~l~~L~~L~L~~N~l~~~~~-l----------~~l~~L~~L~L~~N~i~~l~~l~~l~~  201 (291)
T 1h6t_A          150 -----------------TVLSRLTKLDTLSLEDNQISDIVP-L----------AGLTKLQNLYLSKNHISDLRALAGLKN  201 (291)
T ss_dssp             -----------------GGGGGCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCBCGGGTTCTT
T ss_pred             -----------------hhhccCCCCCEEEccCCccccchh-h----------cCCCccCEEECCCCcCCCChhhccCCC
Confidence                             135567788888888888777643 2          567888888888888888777788888


Q ss_pred             ccEEeeccCcc
Q 017525          253 LKRVEIDNCQD  263 (370)
Q Consensus       253 L~~L~L~~~~~  263 (370)
                      |+.|++++|..
T Consensus       202 L~~L~l~~n~i  212 (291)
T 1h6t_A          202 LDVLELFSQEC  212 (291)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCEEECcCCcc
Confidence            88888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.77  E-value=1.3e-20  Score=178.14  Aligned_cols=237  Identities=17%  Similarity=0.151  Sum_probs=153.1

Q ss_pred             CCCCCCCEEecCCCcCCCCC----hHHHhcCCCCcEEEccCCC---cchhhh-hccc----cCCEEeccCCccc-----c
Q 017525           12 PVCPRLRTLFLSSNIFHRVN----SDFFQSMASLRVLKWSYSN---PLLFEI-SKVV----SLQHLDLSHSRIE-----S   74 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~---~~~~~~-~~l~----~L~~L~l~~~~l~-----~   74 (370)
                      ..+++|++|++++|.++...    +..+..+++|++|++++|.   ..+..+ ..++    +|++|++++|.++     .
T Consensus        25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~  104 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  104 (461)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence            46789999999999877321    2336778999999999987   223333 3344    6999999999886     4


Q ss_pred             cCcccccCCcccEEeccCcccccccC----cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEE
Q 017525           75 LPIEFKCLVNLKCLNLEYTYGISRIP----PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFT  150 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~  150 (370)
                      ++..+..+++|++|++++|......+    .......++|++|++++| .++...       .......+..+++|+.|+
T Consensus       105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~-------~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W          105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAAS-------CEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGG-------HHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHH-------HHHHHHHHhhCCCCCEEE
Confidence            56778889999999999985322111    111234668999999998 665311       112345566778999999


Q ss_pred             EEecchhhh--HhhhcCC--CCCccccCcEEecCcCCCCccc----cccccccCCCcEEEEecCCcccceeccCCCcccc
Q 017525          151 ITLNNFHAF--QRLLGSC--MPQYVSTPSLCLSHFNNSKSLG----VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRV  222 (370)
Q Consensus       151 l~~~~~~~~--~~~~~~~--~~~~l~L~~l~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~  222 (370)
                      ++++.+...  ..+....  ...  .++.+.+.++.- +..+    ...+..+++|++|++++|.+++.+...+++... 
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~--~L~~L~L~~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~-  252 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPC--QLEALKLESCGV-TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL-  252 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCC--CCCEEECTTSCC-BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT-
T ss_pred             CcCCCcchHHHHHHHHHHhcCCC--CceEEEccCCCC-cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh-
Confidence            999876542  2222100  011  477888877743 2221    124556789999999998877654322111000 


Q ss_pred             ccccccccCcEEEEecccccc-----c-CcccCCCCccEEeeccCcc
Q 017525          223 LEISGFHSLKNVYISRSKFRH-----A-TWLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       223 ~~~~~~~~L~~L~l~~~~l~~-----~-~~l~~l~~L~~L~L~~~~~  263 (370)
                         ..+++|++|++++|++++     + ..+..+++|++|++++|..
T Consensus       253 ---~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          253 ---HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             ---STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             ---cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence               246788888888886665     2 2344577888888887764

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.77  E-value=2.4e-19  Score=157.38  Aligned_cols=225  Identities=14%  Similarity=0.083  Sum_probs=163.6

Q ss_pred             CCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525           39 ASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE  117 (370)
Q Consensus        39 ~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  117 (370)
                      ..+..+.+..+. ........+++|+.|+++++.++.++ .+..+++|+.|++++| .+..++  .+.++++|++|++++
T Consensus        19 ~~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~   94 (272)
T 3rfs_A           19 AETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTG   94 (272)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTT
T ss_pred             HHHHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCC
Confidence            344445555555 33345678899999999999998776 5789999999999999 455554  389999999999999


Q ss_pred             cCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCC
Q 017525          118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRH  197 (370)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~  197 (370)
                      | .+..++           ...+..+++|+.|+++.|.+..+                            ....+..+++
T Consensus        95 n-~l~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~----------------------------~~~~~~~l~~  134 (272)
T 3rfs_A           95 N-QLQSLP-----------NGVFDKLTNLKELVLVENQLQSL----------------------------PDGVFDKLTN  134 (272)
T ss_dssp             S-CCCCCC-----------TTTTTTCTTCCEEECTTSCCCCC----------------------------CTTTTTTCTT
T ss_pred             C-ccCccC-----------hhHhcCCcCCCEEECCCCcCCcc----------------------------CHHHhccCCC
Confidence            9 776432           33456778888887776643211                            0124677889


Q ss_pred             CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcchHHhhhccccCC
Q 017525          198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQDMKEIIDSEKFGE  275 (370)
Q Consensus       198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~~~~~~~~~~~~~  275 (370)
                      |++|++++|.++.++...+         ..+++|++|++++|++++++.  ++.+++|+.|++++|... .+.       
T Consensus       135 L~~L~L~~n~l~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~-------  197 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVF---------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP-------  197 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCC-------
T ss_pred             CCEEECCCCccCccCHHHh---------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-ccC-------
Confidence            9999999999988765443         568999999999998888754  678999999999998743 221       


Q ss_pred             CcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCCCCCCCCC
Q 017525          276 VPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLPLDCNRGL  336 (370)
Q Consensus       276 ~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~  336 (370)
                           +..+..+++|+.|++++++-       .+.+|.|+.|.+..+.--..+|.......
T Consensus       198 -----~~~~~~l~~L~~L~l~~N~~-------~~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          198 -----DGVFDRLTSLQYIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             -----TTTTTTCTTCCEEECCSSCB-------CCCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             -----HHHHhCCcCCCEEEccCCCc-------cccCcHHHHHHHHHHhCCCcccCcccccC
Confidence                 23567889999999998842       13467788877766544445666554443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.76  E-value=4e-18  Score=146.62  Aligned_cols=206  Identities=17%  Similarity=0.210  Sum_probs=155.0

Q ss_pred             cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc-cCCCccccccc
Q 017525           51 PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE-CAALPQARDSI  128 (370)
Q Consensus        51 ~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~  128 (370)
                      .+|. +.  .+|++|++++|+++.+|. .++.+++|+.|++++|..++.++...+.++++|++|++++ | .+..++   
T Consensus        25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~---   97 (239)
T 2xwt_C           25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYID---   97 (239)
T ss_dssp             SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEEC---
T ss_pred             ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcC---
Confidence            5565 32  489999999999998877 6889999999999999557788876689999999999998 7 776432   


Q ss_pred             ccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc---EEEEec
Q 017525          129 LFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ---TLQLTY  205 (370)
Q Consensus       129 ~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~---~L~l~~  205 (370)
                              ...+..+++|+.++++++.+..++                              .+..+++|+   +|++++
T Consensus        98 --------~~~f~~l~~L~~L~l~~n~l~~lp------------------------------~~~~l~~L~~L~~L~l~~  139 (239)
T 2xwt_C           98 --------PDALKELPLLKFLGIFNTGLKMFP------------------------------DLTKVYSTDIFFILEITD  139 (239)
T ss_dssp             --------TTSEECCTTCCEEEEEEECCCSCC------------------------------CCTTCCBCCSEEEEEEES
T ss_pred             --------HHHhCCCCCCCEEeCCCCCCcccc------------------------------ccccccccccccEEECCC
Confidence                    345677889999999887643321                              123344454   999999


Q ss_pred             C-CcccceeccCCCccccccccccccCc-EEEEecccccccCc-ccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525          206 N-DLDEIKIDNGGEVKRVLEISGFHSLK-NVYISRSKFRHATW-LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA  282 (370)
Q Consensus       206 ~-~l~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  282 (370)
                      | .++.++...+         ..+++|+ +|++++|+++.++. ....++|+.|++++|..++.+.            +.
T Consensus       140 N~~l~~i~~~~~---------~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~------------~~  198 (239)
T 2xwt_C          140 NPYMTSIPVNAF---------QGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID------------KD  198 (239)
T ss_dssp             CTTCCEECTTTT---------TTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC------------TT
T ss_pred             CcchhhcCcccc---------cchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC------------HH
Confidence            9 8988876544         5689999 99999998877653 2234789999999996455442            23


Q ss_pred             Ccccc-ccccccccccccccccccCCCccCCCcceEeecCCCCC
Q 017525          283 NLIPF-ARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLL  325 (370)
Q Consensus       283 ~~~~~-p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L  325 (370)
                      .+..+ ++|+.|+++++ .++.++..  .+++|+.|.+.+++.|
T Consensus       199 ~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          199 AFGGVYSGPSLLDVSQT-SVTALPSK--GLEHLKELIARNTWTL  239 (239)
T ss_dssp             TTTTCSBCCSEEECTTC-CCCCCCCT--TCTTCSEEECTTC---
T ss_pred             HhhccccCCcEEECCCC-ccccCChh--HhccCceeeccCccCC
Confidence            56777 99999999987 67777654  6999999999988754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.76  E-value=1.5e-19  Score=166.93  Aligned_cols=95  Identities=12%  Similarity=0.125  Sum_probs=59.1

Q ss_pred             cccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------Ccc--cCCCCccEEeeccCc
Q 017525          191 SLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWL--FLAPNLKRVEIDNCQ  262 (370)
Q Consensus       191 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l--~~l~~L~~L~L~~~~  262 (370)
                      .+..+++|++|++++|.+++.+....+.     ....+++|++|+|++|++++.      ..+  +.+++|+.|+|++|.
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-----~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~  285 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAI-----ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  285 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHH-----HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHH-----HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence            4667788888888888875321111000     005678888888888877653      233  337888888888887


Q ss_pred             chHHhhhccccCCCcccccCCc-ccccccccccccccc
Q 017525          263 DMKEIIDSEKFGEVPAEVMANL-IPFARLERLILEELK  299 (370)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~  299 (370)
                      .......         .++..+ ..+|+|+.|++++|.
T Consensus       286 i~~~g~~---------~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          286 IELDAVR---------TLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             CBHHHHH---------HHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCHHHHH---------HHHHHHHhcCCCceEEEccCCc
Confidence            5442100         011233 457888888888873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.75  E-value=7.1e-18  Score=148.30  Aligned_cols=192  Identities=23%  Similarity=0.229  Sum_probs=146.3

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.++.++..  .++++|++|++++|.++.++...+.++++|++|++++|.   ..+..+..+++|++|++++|.++.++
T Consensus        37 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  116 (276)
T 2z62_A           37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE  116 (276)
T ss_dssp             TCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST
T ss_pred             CCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC
Confidence            5778888864  789999999999999998888768999999999999998   44567899999999999999998776


Q ss_pred             c-ccccCCcccEEeccCcccccc--cCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCcc-EEEEE
Q 017525           77 I-EFKCLVNLKCLNLEYTYGISR--IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLS-VFTIT  152 (370)
Q Consensus        77 ~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~l~l~  152 (370)
                      . .++.+++|++|++++|. +..  +|.. +.++++|++|++++| .+..++        ...+..+..++.+. .++++
T Consensus       117 ~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N-~l~~~~--------~~~~~~l~~L~~l~l~L~ls  185 (276)
T 2z62_A          117 NFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSN-KIQSIY--------CTDLRVLHQMPLLNLSLDLS  185 (276)
T ss_dssp             TCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSS-CCCEEC--------GGGGHHHHTCTTCCEEEECC
T ss_pred             chhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCC-CCCcCC--------HHHhhhhhhccccceeeecC
Confidence            6 68899999999999994 444  4554 999999999999999 776432        12233333344333 55555


Q ss_pred             ecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525          153 LNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK  232 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  232 (370)
                      .+.+..++                             .......+|+.|++++|.++.++...+         ..+++|+
T Consensus       186 ~n~l~~~~-----------------------------~~~~~~~~L~~L~L~~n~l~~~~~~~~---------~~l~~L~  227 (276)
T 2z62_A          186 LNPMNFIQ-----------------------------PGAFKEIRLKELALDTNQLKSVPDGIF---------DRLTSLQ  227 (276)
T ss_dssp             SSCCCEEC-----------------------------TTSSCSCCEEEEECCSSCCSCCCTTTT---------TTCCSCC
T ss_pred             CCcccccC-----------------------------ccccCCCcccEEECCCCceeecCHhHh---------ccccccc
Confidence            54322110                             012223479999999999998876544         5689999


Q ss_pred             EEEEeccccc
Q 017525          233 NVYISRSKFR  242 (370)
Q Consensus       233 ~L~l~~~~l~  242 (370)
                      +|++++|.++
T Consensus       228 ~L~l~~N~~~  237 (276)
T 2z62_A          228 KIWLHTNPWD  237 (276)
T ss_dssp             EEECCSSCBC
T ss_pred             EEEccCCccc
Confidence            9999999665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=1.6e-18  Score=156.74  Aligned_cols=219  Identities=21%  Similarity=0.193  Sum_probs=114.8

Q ss_pred             CCEEecCCCcCCCCChHHHhcC--CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc--cCcccccCCcccEEec
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSM--ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES--LPIEFKCLVNLKCLNL   90 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l   90 (370)
                      ++.++++++.+.   +..+..+  +++++|+++++.  ..+..+..+++|++|++++|.++.  +|..+..+++|++|++
T Consensus        49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            445555554433   2223444  555555555554  222233445555555555555431  4444445555555555


Q ss_pred             cCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCc
Q 017525           91 EYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQY  170 (370)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  170 (370)
                      ++|......+.. ++++++|++|++++|..++.          ......+..+++|                        
T Consensus       126 ~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~----------~~l~~~~~~~~~L------------------------  170 (336)
T 2ast_B          126 EGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRL------------------------  170 (336)
T ss_dssp             TTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTC------------------------
T ss_pred             cCcccCHHHHHH-HhcCCCCCEEECCCCCCCCH----------HHHHHHHhcCCCC------------------------
Confidence            555222222222 44455555555555422220          0112223334444                        


Q ss_pred             cccCcEEecCcCCCCccc-cccccccC-CCcEEEEecCC--ccc--ceeccCCCccccccccccccCcEEEEeccc-ccc
Q 017525          171 VSTPSLCLSHFNNSKSLG-VFSLASLR-HLQTLQLTYND--LDE--IKIDNGGEVKRVLEISGFHSLKNVYISRSK-FRH  243 (370)
Q Consensus       171 l~L~~l~l~~~~~~~~~~-~~~l~~l~-~L~~L~l~~~~--l~~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~  243 (370)
                         +.|.+.++..++... ...+..++ +|++|++++|.  +++  ++..+          ..+++|++|++++|. +++
T Consensus       171 ---~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~----------~~~~~L~~L~l~~~~~l~~  237 (336)
T 2ast_B          171 ---DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV----------RRCPNLVHLDLSDSVMLKN  237 (336)
T ss_dssp             ---CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH----------HHCTTCSEEECTTCTTCCG
T ss_pred             ---CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH----------hhCCCCCEEeCCCCCcCCH
Confidence               444444443333221 12355677 88888888873  332  22111          467888888888885 554


Q ss_pred             --cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          244 --ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       244 --~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                        +..+..+++|++|++++|..+.+..            ...+..+|+|+.|++++|
T Consensus       238 ~~~~~l~~l~~L~~L~l~~~~~~~~~~------------~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          238 DCFQEFFQLNYLQHLSLSRCYDIIPET------------LLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGGGGGCTTCCEEECTTCTTCCGGG------------GGGGGGCTTCCEEECTTS
T ss_pred             HHHHHHhCCCCCCEeeCCCCCCCCHHH------------HHHHhcCCCCCEEeccCc
Confidence              4567778888888888886433221            124667888888888887

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=2.9e-17  Score=146.72  Aligned_cols=183  Identities=20%  Similarity=0.274  Sum_probs=149.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFK   80 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~   80 (370)
                      +|.++.++....+++|+.|++++|.++.+++  +..+++|++|++++|. .....+..+++|++|++++|.++.++. +.
T Consensus        50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~  126 (308)
T 1h6u_A           50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LA  126 (308)
T ss_dssp             TSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGG-GT
T ss_pred             CCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCchh-hc
Confidence            5678888876889999999999999998887  7999999999999999 333478999999999999999998875 88


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      .+++|+.|++++| .+..++.  +.++++|++|++++| .+..++             .+..+++|+.|+++.|.+..+.
T Consensus       127 ~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-------------~l~~l~~L~~L~l~~n~l~~~~  189 (308)
T 1h6u_A          127 GLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNA-QVSDLT-------------PLANLSKLTTLKADDNKISDIS  189 (308)
T ss_dssp             TCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCG-------------GGTTCTTCCEEECCSSCCCCCG
T ss_pred             CCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCC-cCCCCh-------------hhcCCCCCCEEECCCCccCcCh
Confidence            9999999999999 5565654  889999999999999 776322             2677888888888776543221


Q ss_pred             hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccc
Q 017525          161 RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSK  240 (370)
Q Consensus       161 ~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  240 (370)
                                                    .+..+++|++|++++|.++.++. +          ..+++|++|++++|.
T Consensus       190 ------------------------------~l~~l~~L~~L~L~~N~l~~~~~-l----------~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          190 ------------------------------PLASLPNLIEVHLKNNQISDVSP-L----------ANTSNLFIVTLTNQT  228 (308)
T ss_dssp             ------------------------------GGGGCTTCCEEECTTSCCCBCGG-G----------TTCTTCCEEEEEEEE
T ss_pred             ------------------------------hhcCCCCCCEEEccCCccCcccc-c----------cCCCCCCEEEccCCe
Confidence                                          25567889999999988887752 2          568899999999998


Q ss_pred             ccccC
Q 017525          241 FRHAT  245 (370)
Q Consensus       241 l~~~~  245 (370)
                      ++..+
T Consensus       229 i~~~~  233 (308)
T 1h6u_A          229 ITNQP  233 (308)
T ss_dssp             EECCC
T ss_pred             eecCC
Confidence            87754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=3.1e-18  Score=156.66  Aligned_cols=241  Identities=15%  Similarity=0.097  Sum_probs=139.7

Q ss_pred             CCCCCCCEEecCCCcCCCCCh----HHHhcCC-CCcEEEccCCC---cchhhhhcc-----ccCCEEeccCCcccccCc-
Q 017525           12 PVCPRLRTLFLSSNIFHRVNS----DFFQSMA-SLRVLKWSYSN---PLLFEISKV-----VSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~----~~~~~l~-~L~~L~l~~~~---~~~~~~~~l-----~~L~~L~l~~~~l~~lp~-   77 (370)
                      ...++|+.|++++|.++..+.    ..+..++ +|++|++++|.   ..+..+..+     ++|++|++++|.++..+. 
T Consensus        19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            344558888888888887765    5567777 78888888887   334555554     788888888888764333 


Q ss_pred             ----ccccC-CcccEEeccCcccccccCccc----ccC-CCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-Cc
Q 017525           78 ----EFKCL-VNLKCLNLEYTYGISRIPPKV----ISN-LKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HL  146 (370)
Q Consensus        78 ----~~~~l-~~L~~L~l~~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L  146 (370)
                          .+..+ ++|++|++++|. ++..+...    +.. .++|++|++++| .++...       .......+...+ +|
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~-------~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKS-------SDELIQILAAIPANV  169 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSC-------HHHHHHHHHTSCTTC
T ss_pred             HHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHH-------HHHHHHHHhcCCccc
Confidence                23444 788888888874 44444322    233 357888888888 655211       012233334443 77


Q ss_pred             cEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccccc-CCCcEEEEecCCcccceeccCCCccccccc
Q 017525          147 SVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL-RHLQTLQLTYNDLDEIKIDNGGEVKRVLEI  225 (370)
Q Consensus       147 ~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~  225 (370)
                      +.|++++|.+........                        ...+..+ ++|++|++++|.+++.+....+....    
T Consensus       170 ~~L~Ls~n~l~~~~~~~l------------------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~----  221 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAEL------------------------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFS----  221 (362)
T ss_dssp             CEEECTTSCGGGSCHHHH------------------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH----
T ss_pred             cEeeecCCCCchhhHHHH------------------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh----
Confidence            777777665433211000                        0123334 47778888877777633221110000    


Q ss_pred             cccccCcEEEEecccccccCc------ccCCCCccEEeeccCc---chHHhhhccccCCCcccccCCccccccccccccc
Q 017525          226 SGFHSLKNVYISRSKFRHATW------LFLAPNLKRVEIDNCQ---DMKEIIDSEKFGEVPAEVMANLIPFARLERLILE  296 (370)
Q Consensus       226 ~~~~~L~~L~l~~~~l~~~~~------l~~l~~L~~L~L~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~  296 (370)
                      ...++|++|++++|++++.+.      +..+++|+.|++++|.   .......         .+...+..+++|+.|+++
T Consensus       222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~---------~l~~~~~~l~~L~~LdL~  292 (362)
T 3goz_A          222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK---------ALGAAFPNIQKIILVDKN  292 (362)
T ss_dssp             HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH---------HHHTTSTTCCEEEEECTT
T ss_pred             cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH---------HHHHHhccCCceEEEecC
Confidence            123578888888776665432      3556778888887775   1111100         022355677777788877


Q ss_pred             cc
Q 017525          297 EL  298 (370)
Q Consensus       297 ~~  298 (370)
                      ++
T Consensus       293 ~N  294 (362)
T 3goz_A          293 GK  294 (362)
T ss_dssp             SC
T ss_pred             CC
Confidence            76

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1e-17  Score=162.31  Aligned_cols=190  Identities=19%  Similarity=0.236  Sum_probs=106.1

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      .+..+..+.+..+.+..+..  ...+++|+.|++++|. .....+..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus        19 ~l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           19 AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             HHHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECc
Confidence            34444555555555554433  3566666666666666 222246666666666666666665554 6666666666666


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      +| .+..++.  +..+++|+.|++++| .+..             +..+..+++|+.|+++.|.+..+            
T Consensus        96 ~N-~l~~l~~--l~~l~~L~~L~Ls~N-~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~l------------  146 (605)
T 1m9s_A           96 EN-KIKDLSS--LKDLKKLKSLSLEHN-GISD-------------INGLVHLPQLESLYLGNNKITDI------------  146 (605)
T ss_dssp             SS-CCCCCTT--STTCTTCCEEECTTS-CCCC-------------CGGGGGCTTCSEEECCSSCCCCC------------
T ss_pred             CC-CCCCChh--hccCCCCCEEEecCC-CCCC-------------CccccCCCccCEEECCCCccCCc------------
Confidence            66 4444442  666666666666666 5542             12345556666665555432211            


Q ss_pred             ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCC
Q 017525          172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAP  251 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~  251 (370)
                                        ..+..+++|+.|+|++|.+..++. +          ..+++|+.|+|++|++++++.+..++
T Consensus       147 ------------------~~l~~l~~L~~L~Ls~N~l~~~~~-l----------~~l~~L~~L~Ls~N~i~~l~~l~~l~  197 (605)
T 1m9s_A          147 ------------------TVLSRLTKLDTLSLEDNQISDIVP-L----------AGLTKLQNLYLSKNHISDLRALAGLK  197 (605)
T ss_dssp             ------------------GGGGSCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCBCGGGTTCT
T ss_pred             ------------------hhhcccCCCCEEECcCCcCCCchh-h----------ccCCCCCEEECcCCCCCCChHHccCC
Confidence                              134445566666666665555432 1          44566666666666555555555666


Q ss_pred             CccEEeeccCcc
Q 017525          252 NLKRVEIDNCQD  263 (370)
Q Consensus       252 ~L~~L~L~~~~~  263 (370)
                      +|+.|+|++|..
T Consensus       198 ~L~~L~L~~N~l  209 (605)
T 1m9s_A          198 NLDVLELFSQEC  209 (605)
T ss_dssp             TCSEEECCSEEE
T ss_pred             CCCEEEccCCcC
Confidence            666666666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=3.8e-18  Score=152.63  Aligned_cols=136  Identities=11%  Similarity=0.041  Sum_probs=96.1

Q ss_pred             CCCCCEEecCCCcCCC--CCh-HHHhcCCCCcEEEccCCC---cchhhh--hccccCCEEeccCCcccc-cC----cccc
Q 017525           14 CPRLRTLFLSSNIFHR--VNS-DFFQSMASLRVLKWSYSN---PLLFEI--SKVVSLQHLDLSHSRIES-LP----IEFK   80 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~--~~~-~~~~~l~~L~~L~l~~~~---~~~~~~--~~l~~L~~L~l~~~~l~~-lp----~~~~   80 (370)
                      ...++.+.+.++.++.  +.. ..+..+++|++|++++|.   ..|..+  ..+++|++|++++|.++. .+    ..+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3457888888876652  111 012345789999999998   566666  889999999999999874 22    2345


Q ss_pred             cCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchh--hhhcccCCCccEEEEEecchhh
Q 017525           81 CLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVL--VEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        81 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      .+++|++|++++| .+..++...++++++|++|++++| .+....         ..  ...+..+++|+.|++++|.+..
T Consensus       143 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~---------~~~~~~~~~~l~~L~~L~Ls~N~l~~  211 (310)
T 4glp_A          143 LKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDN-PGLGER---------GLMAALCPHKFPAIQNLALRNTGMET  211 (310)
T ss_dssp             BCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSC-TTCHHH---------HHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred             hccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCC-CCccch---------hhhHHHhhhcCCCCCEEECCCCCCCc
Confidence            7999999999999 455566555899999999999999 543100         11  1223567888888888887644


Q ss_pred             hH
Q 017525          159 FQ  160 (370)
Q Consensus       159 ~~  160 (370)
                      ++
T Consensus       212 l~  213 (310)
T 4glp_A          212 PT  213 (310)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=3.4e-18  Score=166.58  Aligned_cols=286  Identities=15%  Similarity=0.163  Sum_probs=147.2

Q ss_pred             CCCCCCEEecCCCcCCCCC----hHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcccccCccccc
Q 017525           13 VCPRLRTLFLSSNIFHRVN----SDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIESLPIEFKC   81 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~   81 (370)
                      .+++|++|++++|.++...    ..+...+++|++|+++++.       .++..+.++++|++|++++|.+..+|..+..
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~  241 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA  241 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence            5666777777776554331    1234556666666666655       1233345566677777776666555555555


Q ss_pred             CCcccEEeccCcc--------------------------cccccCcccccCCCCCcEEEccccCCCcccccccccCCcch
Q 017525           82 LVNLKCLNLEYTY--------------------------GISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRV  135 (370)
Q Consensus        82 l~~L~~L~l~~~~--------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  135 (370)
                      +++|+.|+++.+.                          ....++. .+..+++|++|++++| .+..          ..
T Consensus       242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~-~l~~----------~~  309 (592)
T 3ogk_B          242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYA-LLET----------ED  309 (592)
T ss_dssp             CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTC-CCCH----------HH
T ss_pred             hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCC-cCCH----------HH
Confidence            5555555554221                          1112222 2445667777777766 3431          11


Q ss_pred             hhhhcccCCCccEEEEEecch-hhhHhhhcCCCCCccccCcEEecC----------cCCCCcccccc-ccccCCCcEEEE
Q 017525          136 LVEELLGLEHLSVFTITLNNF-HAFQRLLGSCMPQYVSTPSLCLSH----------FNNSKSLGVFS-LASLRHLQTLQL  203 (370)
Q Consensus       136 ~~~~l~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~~l~L~~l~l~~----------~~~~~~~~~~~-l~~l~~L~~L~l  203 (370)
                      ....+..+++|+.|++..+.. ..++.+.....    +|+.|.+.+          |...+..+... ...+++|++|++
T Consensus       310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~----~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l  385 (592)
T 3ogk_B          310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK----QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV  385 (592)
T ss_dssp             HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT----TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred             HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC----CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence            223345667777777763211 12222221111    366677764          55555443322 234566666666


Q ss_pred             ecCCcccceeccCCC-----------------ccc------ccc--ccccccCcEEEEecc--cccc--cCccc-CCCCc
Q 017525          204 TYNDLDEIKIDNGGE-----------------VKR------VLE--ISGFHSLKNVYISRS--KFRH--ATWLF-LAPNL  253 (370)
Q Consensus       204 ~~~~l~~~~~~~~~~-----------------~~~------~~~--~~~~~~L~~L~l~~~--~l~~--~~~l~-~l~~L  253 (370)
                      +.+.+++......+.                 ...      .++  ...+++|++|+++.|  .+++  +..++ .+++|
T Consensus       386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence            555554332211100                 000      000  023555666666544  1222  11222 36666


Q ss_pred             cEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccc--cCCCccCCCcceEeecCCCCCCCC
Q 017525          254 KRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTV--HSKALPFPHLKEMSVDRCPLLKKL  328 (370)
Q Consensus       254 ~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i--~~~~~~~~~L~~L~l~~c~~L~~l  328 (370)
                      +.|+|++|......            .+..+..+++|+.|++++|. +++.  ......+++|+.|++++|. ++..
T Consensus       466 ~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          466 RWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             CEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             eEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence            66666666532212            12245677999999999986 5432  2222358899999999996 6654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.73  E-value=5e-17  Score=147.85  Aligned_cols=234  Identities=16%  Similarity=0.167  Sum_probs=135.7

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcc-cccCc-ccccCCcccEEeccC
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRI-ESLPI-EFKCLVNLKCLNLEY   92 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l-~~lp~-~~~~l~~L~~L~l~~   92 (370)
                      ++++.+++.++.+|..+   .+++++|++++|.  .+|. .|.++++|++|++++|.+ +.+|. .+..+++++.+.+..
T Consensus        12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            55667777777777652   3467777777776  4543 466777777777777765 34544 355666666544433


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVS  172 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~  172 (370)
                      +..+..++.+++.++++|++|++++| .+..++           ........++..++                      
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~-----------~~~~~~~~~l~~l~----------------------  134 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLP-----------DVHKIHSLQKVLLD----------------------  134 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCC-----------CCTTCCBSSCEEEE----------------------
T ss_pred             CCcccccCchhhhhcccccccccccc-ccccCC-----------chhhcccchhhhhh----------------------
Confidence            33555665555677777777777776 554322           01111122233333                      


Q ss_pred             cCcEEecCcCCCCcccccccccc-CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-cccccC--ccc
Q 017525          173 TPSLCLSHFNNSKSLGVFSLASL-RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHAT--WLF  248 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~l~  248 (370)
                           +.+...+.......+..+ ..++.|++++|.++.++...+          ...+|++|++.++ .++.++  .+.
T Consensus       135 -----l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~  199 (350)
T 4ay9_X          135 -----IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF----------NGTQLDELNLSDNNNLEELPNDVFH  199 (350)
T ss_dssp             -----EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTT
T ss_pred             -----hccccccccccccchhhcchhhhhhccccccccCCChhhc----------cccchhHHhhccCCcccCCCHHHhc
Confidence                 333333332222234443 357778888888887765442          2457788888764 777765  356


Q ss_pred             CCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeec
Q 017525          249 LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVD  320 (370)
Q Consensus       249 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~  320 (370)
                      .+++|+.|+|++|.. +.+.               ...+.+|+.|.+.++.+++.++. ...+++|+.+++.
T Consensus       200 ~l~~L~~LdLs~N~l-~~lp---------------~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          200 GASGPVILDISRTRI-HSLP---------------SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             TEECCSEEECTTSCC-CCCC---------------SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             cCcccchhhcCCCCc-CccC---------------hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            778888888888753 3221               12355555565556666666653 4567778777774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.73  E-value=9.6e-18  Score=163.35  Aligned_cols=271  Identities=15%  Similarity=0.142  Sum_probs=150.4

Q ss_pred             CCCCCCCEEecCCCcCCCCCh----HHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccC----------------
Q 017525           12 PVCPRLRTLFLSSNIFHRVNS----DFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSH----------------   69 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~----------------   69 (370)
                      ..+++|+.|++++|.++.+..    ..+.++++|++|++++|.  .++..+..+++|++|+++.                
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            356778888888777653322    234567888888888776  5555666666666666652                


Q ss_pred             -----------CcccccCcccccCCcccEEeccCcccccc-cCcccccCCCCCcEEEccccCCCcccccccccCCcchhh
Q 017525           70 -----------SRIESLPIEFKCLVNLKCLNLEYTYGISR-IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLV  137 (370)
Q Consensus        70 -----------~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~  137 (370)
                                 +....+|..+..+++|++|++++|. +.. .....+.++++|++|++..+  +..          ....
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~--~~~----------~~l~  335 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV--IGD----------RGLE  335 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH----------HHHH
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc--cCH----------HHHH
Confidence                       2222345556677888888888875 322 11122567777777777632  221          0111


Q ss_pred             hhcccCCCccEEEEE------------------------------------ecchhh--hHhhhc-CCCCCccccCcEEe
Q 017525          138 EELLGLEHLSVFTIT------------------------------------LNNFHA--FQRLLG-SCMPQYVSTPSLCL  178 (370)
Q Consensus       138 ~~l~~l~~L~~l~l~------------------------------------~~~~~~--~~~~~~-~~~~~~l~L~~l~l  178 (370)
                      .....+++|+.|++.                                    .+....  +..+.. ..     +|+.+.+
T Consensus       336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-----~L~~L~l  410 (592)
T 3ogk_B          336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK-----NLCDFRL  410 (592)
T ss_dssp             HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC-----SCCEEEE
T ss_pred             HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC-----CCcEEEE
Confidence            112334445555554                                    332211  111111 11     2444444


Q ss_pred             cC---cCCCCcc----cc-ccccccCCCcEEEEecC--CcccceeccCCCccccccccccccCcEEEEecccccc--cC-
Q 017525          179 SH---FNNSKSL----GV-FSLASLRHLQTLQLTYN--DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH--AT-  245 (370)
Q Consensus       179 ~~---~~~~~~~----~~-~~l~~l~~L~~L~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~-  245 (370)
                      ..   +..++..    ++ ..+..+++|++|+++.+  .+++......+        ..+++|++|++++|++++  ++ 
T Consensus       411 ~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~  482 (592)
T 3ogk_B          411 VLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------QYSPNVRWMLLGYVGESDEGLME  482 (592)
T ss_dssp             EECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--------HSCTTCCEEEECSCCSSHHHHHH
T ss_pred             eecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--------HhCccceEeeccCCCCCHHHHHH
Confidence            32   2233221    01 11334556666666531  13322211111        457899999999998765  23 


Q ss_pred             cccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCC--CccCCCcceEeecC
Q 017525          246 WLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSK--ALPFPHLKEMSVDR  321 (370)
Q Consensus       246 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~--~~~~~~L~~L~l~~  321 (370)
                      .+..+++|+.|+|++|.. ++..           .+.....+|+|+.|++++|. +++....  ...+|.+....+..
T Consensus       483 ~~~~~~~L~~L~l~~n~l-~~~~-----------~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~  547 (592)
T 3ogk_B          483 FSRGCPNLQKLEMRGCCF-SERA-----------IAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS  547 (592)
T ss_dssp             HHTCCTTCCEEEEESCCC-BHHH-----------HHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred             HHhcCcccCeeeccCCCC-cHHH-----------HHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence            356789999999999984 3321           11245578999999999996 6554332  22467776665544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=2.3e-18  Score=158.95  Aligned_cols=248  Identities=16%  Similarity=0.117  Sum_probs=156.9

Q ss_pred             cCCCCChHHHhcCCCCcEEEccCCC---c----chhhhhccccCCEEeccCCccc----ccCcc-------cccCCcccE
Q 017525           26 IFHRVNSDFFQSMASLRVLKWSYSN---P----LLFEISKVVSLQHLDLSHSRIE----SLPIE-------FKCLVNLKC   87 (370)
Q Consensus        26 ~i~~~~~~~~~~l~~L~~L~l~~~~---~----~~~~~~~l~~L~~L~l~~~~l~----~lp~~-------~~~l~~L~~   87 (370)
                      .+..++.. +..+++|++|++++|.   .    ++..+..+++|++|++++|.+.    .+|..       +..+++|++
T Consensus        20 ~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           20 DEKSVFAV-LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HHHTTSHH-HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHH-HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            34455555 6778888888888887   2    3344667888888888887543    33433       367788888


Q ss_pred             EeccCccccc----ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccC---------CCccEEEEEec
Q 017525           88 LNLEYTYGIS----RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGL---------EHLSVFTITLN  154 (370)
Q Consensus        88 L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------~~L~~l~l~~~  154 (370)
                      |++++|....    .++.. +.++++|++|++++| .++...       .......+..+         ++|+.|+++.|
T Consensus        99 L~Ls~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n-~l~~~~-------~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           99 VRLSDNAFGPTAQEPLIDF-LSKHTPLEHLYLHNN-GLGPQA-------GAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             EECCSCCCCTTTHHHHHHH-HHHCTTCCEEECCSS-CCHHHH-------HHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             EECCCCcCCHHHHHHHHHH-HHhCCCCCEEECcCC-CCCHHH-------HHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            8888884333    24433 677888888888888 554211       00112223333         56666665555


Q ss_pred             chh--hhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCc
Q 017525          155 NFH--AFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLK  232 (370)
Q Consensus       155 ~~~--~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~  232 (370)
                      .+.  .++.+.                          ..+..+++|++|++++|.+++.......+.    ....+++|+
T Consensus       170 ~l~~~~~~~l~--------------------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~  219 (386)
T 2ca6_A          170 RLENGSMKEWA--------------------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELK  219 (386)
T ss_dssp             CCTGGGHHHHH--------------------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCC
T ss_pred             CCCcHHHHHHH--------------------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCcc
Confidence            432  111100                          245677899999999998884321110000    015789999


Q ss_pred             EEEEecccccc-----c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCc--ccccccccccccccccccc-
Q 017525          233 NVYISRSKFRH-----A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL--IPFARLERLILEELKNLKT-  303 (370)
Q Consensus       233 ~L~l~~~~l~~-----~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~L~~L~l~~~~~l~~-  303 (370)
                      +|+|++|++++     + ..+..+++|+.|+|++|........         .++..+  ..+++|+.|++++| .++. 
T Consensus       220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~---------~l~~~l~~~~~~~L~~L~L~~n-~i~~~  289 (386)
T 2ca6_A          220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA---------AVVDAFSKLENIGLQTLRLQYN-EIELD  289 (386)
T ss_dssp             EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH---------HHHHHHHTCSSCCCCEEECCSS-CCBHH
T ss_pred             EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH---------HHHHHHhhccCCCeEEEECcCC-cCCHH
Confidence            99999997742     2 3567899999999999985433110         011233  34899999999998 4554 


Q ss_pred             ----ccCCC-ccCCCcceEeecCCC
Q 017525          304 ----VHSKA-LPFPHLKEMSVDRCP  323 (370)
Q Consensus       304 ----i~~~~-~~~~~L~~L~l~~c~  323 (370)
                          ++... ..+++|+.|++.+|+
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCc
Confidence                54433 347999999999874

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.72  E-value=1.6e-16  Score=137.69  Aligned_cols=103  Identities=18%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEec
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNL   90 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l   90 (370)
                      +..+.++++++.++.+|..+   .+++++|+++++.   ..+..+.++++|++|++++|.++.++. .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45678888888888888752   2688999999888   445568888999999999998886655 4788899999999


Q ss_pred             cCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           91 EYTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      ++| .+..++...+.++++|++|++++| .+.
T Consensus        91 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~  120 (251)
T 3m19_A           91 ANN-QLASLPLGVFDHLTQLDKLYLGGN-QLK  120 (251)
T ss_dssp             TTS-CCCCCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             CCC-cccccChhHhcccCCCCEEEcCCC-cCC
Confidence            988 566676666888999999999888 665

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.71  E-value=9e-18  Score=151.87  Aligned_cols=197  Identities=16%  Similarity=0.137  Sum_probs=148.0

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEe
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLN   89 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~   89 (370)
                      ++++.|++++|.+...++. +..+++|++|++++|.    .++..+..+++|++|++++|.++ ..+..++.+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            8899999999988876666 5689999999999998    27788899999999999999987 5667788899999999


Q ss_pred             ccCcccccc--cCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCC-CccEEEEEecch----hhhHhh
Q 017525           90 LEYTYGISR--IPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLE-HLSVFTITLNNF----HAFQRL  162 (370)
Q Consensus        90 l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~l~l~~~~~----~~~~~~  162 (370)
                      +++|..++.  ++. .+.++++|++|++++|..++.          ......+..++ +|+.|+++++..    ..++  
T Consensus       149 L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~----------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~--  215 (336)
T 2ast_B          149 LSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLS--  215 (336)
T ss_dssp             CTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH--
T ss_pred             CCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcCh----------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHH--
Confidence            999955553  444 378899999999999844441          12345567778 888888887742    1111  


Q ss_pred             hcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCC-cccceeccCCCccccccccccccCcEEEEecc-c
Q 017525          163 LGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYND-LDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-K  240 (370)
Q Consensus       163 ~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~  240 (370)
                                                 ..+..+++|++|++++|. +++.....+         ..+++|++|++++| .
T Consensus       216 ---------------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~l---------~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          216 ---------------------------TLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             ---------------------------HHHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTCTT
T ss_pred             ---------------------------HHHhhCCCCCEEeCCCCCcCCHHHHHHH---------hCCCCCCEeeCCCCCC
Confidence                                       134456788888888877 554332222         45688888888888 4


Q ss_pred             ccc--cCcccCCCCccEEeeccC
Q 017525          241 FRH--ATWLFLAPNLKRVEIDNC  261 (370)
Q Consensus       241 l~~--~~~l~~l~~L~~L~L~~~  261 (370)
                      ++.  +..++.+++|+.|++++|
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc
Confidence            433  235677889999999888

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=1e-17  Score=148.36  Aligned_cols=185  Identities=19%  Similarity=0.205  Sum_probs=143.3

Q ss_pred             CcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccC
Q 017525           41 LRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECA  119 (370)
Q Consensus        41 L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  119 (370)
                      +..+.+.... ........+++|++|++++|.++.++ .+..+++|+.|++++| .+..++.  +.++++|++|++++| 
T Consensus        26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-  100 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-  100 (291)
T ss_dssp             HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-
T ss_pred             HHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-
Confidence            3333455544 33334567899999999999999886 4889999999999999 5566655  899999999999999 


Q ss_pred             CCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc
Q 017525          120 ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ  199 (370)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~  199 (370)
                      .+..             +..+..+++|+.|+++.|.+..+                              ..+..+++|+
T Consensus       101 ~l~~-------------~~~l~~l~~L~~L~L~~n~i~~~------------------------------~~l~~l~~L~  137 (291)
T 1h6t_A          101 KVKD-------------LSSLKDLKKLKSLSLEHNGISDI------------------------------NGLVHLPQLE  137 (291)
T ss_dssp             CCCC-------------GGGGTTCTTCCEEECTTSCCCCC------------------------------GGGGGCTTCC
T ss_pred             cCCC-------------ChhhccCCCCCEEECCCCcCCCC------------------------------hhhcCCCCCC
Confidence            7753             23367778888877776543211                              2466788999


Q ss_pred             EEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCccc
Q 017525          200 TLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAE  279 (370)
Q Consensus       200 ~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~  279 (370)
                      .|++++|.++.++ .+          ..+++|++|++++|++++++.+..+++|+.|++++|.. +++            
T Consensus       138 ~L~l~~n~l~~~~-~l----------~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i-~~l------------  193 (291)
T 1h6t_A          138 SLYLGNNKITDIT-VL----------SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI-SDL------------  193 (291)
T ss_dssp             EEECCSSCCCCCG-GG----------GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CBC------------
T ss_pred             EEEccCCcCCcch-hh----------ccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC-CCC------------
Confidence            9999999998772 22          67899999999999998887788999999999999864 322            


Q ss_pred             ccCCcccccccccccccccc
Q 017525          280 VMANLIPFARLERLILEELK  299 (370)
Q Consensus       280 ~~~~~~~~p~L~~L~l~~~~  299 (370)
                        ..+..+++|+.|+++++.
T Consensus       194 --~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          194 --RALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             --GGGTTCTTCSEEEEEEEE
T ss_pred             --hhhccCCCCCEEECcCCc
Confidence              146788999999999873

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.70  E-value=2.4e-16  Score=136.50  Aligned_cols=173  Identities=18%  Similarity=0.236  Sum_probs=114.7

Q ss_pred             CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEc
Q 017525           39 ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRM  115 (370)
Q Consensus        39 ~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l  115 (370)
                      ...++++++++.  .+|..+.  +++++|++++|+++.++. .++.+++|++|++++| .+..++...+.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence            356777777776  6665554  578888888888776554 5777888888888887 455555555778888888888


Q ss_pred             cccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcccccccccc
Q 017525          116 YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASL  195 (370)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l  195 (370)
                      ++| .+..++           ...+..+++|+.|++++|.+..++                            ...+..+
T Consensus        91 ~~n-~l~~~~-----------~~~~~~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~l  130 (251)
T 3m19_A           91 ANN-QLASLP-----------LGVFDHLTQLDKLYLGGNQLKSLP----------------------------SGVFDRL  130 (251)
T ss_dssp             TTS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCCCCC----------------------------TTTTTTC
T ss_pred             CCC-cccccC-----------hhHhcccCCCCEEEcCCCcCCCcC----------------------------hhHhccC
Confidence            887 665322           234456677777766665432110                            0134556


Q ss_pred             CCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcc
Q 017525          196 RHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       196 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~  263 (370)
                      ++|++|++++|.++.++...+         ..+++|++|++++|+++.++  .+..+++|+.|++++|..
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAF---------DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CcccEEECcCCcCCccCHHHc---------CcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            777788888777776655333         45677888888877776654  356677888888877764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.9e-17  Score=144.33  Aligned_cols=101  Identities=20%  Similarity=0.227  Sum_probs=61.0

Q ss_pred             CCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccE
Q 017525           10 ESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKC   87 (370)
Q Consensus        10 ~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~   87 (370)
                      +...+.+++.++++++.++.++.  +..+++|++|++++|.  .++ .+..+++|++|++++|.++.++. ++.+++|+.
T Consensus        14 pd~~l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~   89 (263)
T 1xeu_A           14 PDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE   89 (263)
T ss_dssp             CSHHHHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred             CCHHHHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence            33455556666666666666552  5666666666666666  444 55666666666666666666655 666666666


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      |++++| .+..++.  +.. ++|++|++++|
T Consensus        90 L~L~~N-~l~~l~~--~~~-~~L~~L~L~~N  116 (263)
T 1xeu_A           90 LSVNRN-RLKNLNG--IPS-ACLSRLFLDNN  116 (263)
T ss_dssp             EECCSS-CCSCCTT--CCC-SSCCEEECCSS
T ss_pred             EECCCC-ccCCcCc--ccc-CcccEEEccCC
Confidence            666666 4444443  222 66666666666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=4.2e-17  Score=145.83  Aligned_cols=225  Identities=14%  Similarity=0.099  Sum_probs=133.0

Q ss_pred             CCCCcEEEccCCC----cch--hhhhccccCCEEeccCCccc-ccCccc--ccCCcccEEeccCcccccccC---ccccc
Q 017525           38 MASLRVLKWSYSN----PLL--FEISKVVSLQHLDLSHSRIE-SLPIEF--KCLVNLKCLNLEYTYGISRIP---PKVIS  105 (370)
Q Consensus        38 l~~L~~L~l~~~~----~~~--~~~~~l~~L~~L~l~~~~l~-~lp~~~--~~l~~L~~L~l~~~~~~~~~~---~~~~~  105 (370)
                      ...++.+.+..+.    .+.  ..+..+++|++|++++|.++ ..|..+  +.+++|++|++++|...+..+   ...+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            3457888888876    111  12234578999999999987 556666  889999999999995544333   12256


Q ss_pred             CCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCC
Q 017525          106 NLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSK  185 (370)
Q Consensus       106 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~  185 (370)
                      .+++|++|++++| .+..+           ....+..+++|+.|++++|.......+....                   
T Consensus       143 ~~~~L~~L~Ls~n-~l~~~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------  191 (310)
T 4glp_A          143 LKPGLKVLSIAQA-HSPAF-----------SCEQVRAFPALTSLDLSDNPGLGERGLMAAL-------------------  191 (310)
T ss_dssp             BCSCCCEEEEECC-SSCCC-----------CTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-------------------
T ss_pred             hccCCCEEEeeCC-Ccchh-----------hHHHhccCCCCCEEECCCCCCccchhhhHHH-------------------
Confidence            8999999999999 77532           2456778899999999999864432221110                   


Q ss_pred             ccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCC---CCccEEeecc
Q 017525          186 SLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLA---PNLKRVEIDN  260 (370)
Q Consensus       186 ~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l---~~L~~L~L~~  260 (370)
                           .+..+++|++|++++|.++.++.....      -...+++|++|++++|++++.  +.+..+   ++|++|++++
T Consensus       192 -----~~~~l~~L~~L~Ls~N~l~~l~~~~~~------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~  260 (310)
T 4glp_A          192 -----CPHKFPAIQNLALRNTGMETPTGVCAA------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF  260 (310)
T ss_dssp             -----CTTSSCCCCSCBCCSSCCCCHHHHHHH------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred             -----hhhcCCCCCEEECCCCCCCchHHHHHH------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence                 122345566666666555443221000      002345666666666655543  223332   4666666666


Q ss_pred             CcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCC
Q 017525          261 CQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRC  322 (370)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c  322 (370)
                      |... .+             +..+  +++|+.|+++++ .++.++. ...+++|+.|+++++
T Consensus       261 N~l~-~l-------------p~~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          261 AGLE-QV-------------PKGL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN  304 (310)
T ss_dssp             SCCC-SC-------------CSCC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSST
T ss_pred             CCCC-ch-------------hhhh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCC
Confidence            5532 22             1122  256666666665 4444432 334566666666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=3.1e-17  Score=159.76  Aligned_cols=39  Identities=10%  Similarity=0.183  Sum_probs=25.7

Q ss_pred             cccccccccccccccccccccC--CCccCCCcceEeecCCCC
Q 017525          285 IPFARLERLILEELKNLKTVHS--KALPFPHLKEMSVDRCPL  324 (370)
Q Consensus       285 ~~~p~L~~L~l~~~~~l~~i~~--~~~~~~~L~~L~l~~c~~  324 (370)
                      ..+|+|+.|++++|.. .+...  ....+++|+.|++++|+.
T Consensus       478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            5578888888888753 33211  123477888888888864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=1.4e-17  Score=152.21  Aligned_cols=258  Identities=11%  Similarity=0.069  Sum_probs=167.4

Q ss_pred             EEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-ch----hhhhccc-cCCEEeccCCccccc-CcccccC-----Cc
Q 017525           19 TLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LL----FEISKVV-SLQHLDLSHSRIESL-PIEFKCL-----VN   84 (370)
Q Consensus        19 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~----~~~~~l~-~L~~L~l~~~~l~~l-p~~~~~l-----~~   84 (370)
                      .+.++.+.++...+.++...++|++|++++|.  . .+    ..+..++ +|++|++++|.++.. +..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35778888887766656666779999999998  2 23    5677788 899999999988754 3344443     89


Q ss_pred             ccEEeccCcccccccCccc----ccCC-CCCcEEEccccCCCcccccccccCCcchhhhhcccC-CCccEEEEEecchhh
Q 017525           85 LKCLNLEYTYGISRIPPKV----ISNL-KILETLRMYECAALPQARDSILFGDCRVLVEELLGL-EHLSVFTITLNNFHA  158 (370)
Q Consensus        85 L~~L~l~~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~l~l~~~~~~~  158 (370)
                      |++|++++|. ++..+...    +..+ ++|++|++++| .++..+       .......+..+ ++|+.|++++|.+..
T Consensus        82 L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~-------~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           82 VTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKS-------SSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             CCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC-------HHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             ccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHH-------HHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            9999999994 44433321    3444 88999999999 666322       11122334443 578888887776542


Q ss_pred             hHhhhcCCCCCccccCcEEecCcCCCCccccccccccC-CCcEEEEecCCcccceeccCCCcccccccccc-ccCcEEEE
Q 017525          159 FQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLR-HLQTLQLTYNDLDEIKIDNGGEVKRVLEISGF-HSLKNVYI  236 (370)
Q Consensus       159 ~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l  236 (370)
                      .....         +               ...+..++ +|++|++++|.+++.+...++...     ..+ ++|++|++
T Consensus       153 ~~~~~---------l---------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-----~~~~~~L~~L~L  203 (362)
T 3goz_A          153 KSSDE---------L---------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFL-----ASIPASVTSLDL  203 (362)
T ss_dssp             SCHHH---------H---------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-----HTSCTTCCEEEC
T ss_pred             HHHHH---------H---------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHH-----HhCCCCCCEEEC
Confidence            11000         0               01233444 899999999999876543221100     234 59999999


Q ss_pred             ecccccccC------cccC-CCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc-------ccc
Q 017525          237 SRSKFRHAT------WLFL-APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK-------NLK  302 (370)
Q Consensus       237 ~~~~l~~~~------~l~~-l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~-------~l~  302 (370)
                      ++|++++..      .+.. .++|++|+|++|........         .+...+..+++|+.|++++|.       .+.
T Consensus       204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE---------NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH---------HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             CCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH---------HHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence            999887732      2344 45999999999974331110         012355778999999999984       123


Q ss_pred             cccCCCccCCCcceEeecCCC
Q 017525          303 TVHSKALPFPHLKEMSVDRCP  323 (370)
Q Consensus       303 ~i~~~~~~~~~L~~L~l~~c~  323 (370)
                      .+......+++|+.|++++++
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCB
T ss_pred             HHHHHhccCCceEEEecCCCc
Confidence            333344457778888887764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=2.8e-17  Score=159.36  Aligned_cols=187  Identities=19%  Similarity=0.213  Sum_probs=145.6

Q ss_pred             CCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525           39 ASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE  117 (370)
Q Consensus        39 ~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  117 (370)
                      ..+..+.+..+. .....+..+++|+.|++++|.+..+| .+..+++|+.|++++| .+..++.  +..+++|+.|++++
T Consensus        21 ~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~   96 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDE   96 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCS
T ss_pred             HHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcC
Confidence            334445566555 32334678899999999999999887 5889999999999999 5566655  88999999999999


Q ss_pred             cCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCC
Q 017525          118 CAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRH  197 (370)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~  197 (370)
                      | .+..             +..+..+++|+.|+++.|.+..                              +..+..+++
T Consensus        97 N-~l~~-------------l~~l~~l~~L~~L~Ls~N~l~~------------------------------l~~l~~l~~  132 (605)
T 1m9s_A           97 N-KIKD-------------LSSLKDLKKLKSLSLEHNGISD------------------------------INGLVHLPQ  132 (605)
T ss_dssp             S-CCCC-------------CTTSTTCTTCCEEECTTSCCCC------------------------------CGGGGGCTT
T ss_pred             C-CCCC-------------ChhhccCCCCCEEEecCCCCCC------------------------------CccccCCCc
Confidence            9 7752             2256677888887777654321                              124667899


Q ss_pred             CcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCc
Q 017525          198 LQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVP  277 (370)
Q Consensus       198 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~  277 (370)
                      |+.|+|++|.+..++ .+          ..+++|+.|+|++|+++++..+..+++|+.|+|++|.. .++          
T Consensus       133 L~~L~Ls~N~l~~l~-~l----------~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i-~~l----------  190 (605)
T 1m9s_A          133 LESLYLGNNKITDIT-VL----------SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI-SDL----------  190 (605)
T ss_dssp             CSEEECCSSCCCCCG-GG----------GSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CBC----------
T ss_pred             cCEEECCCCccCCch-hh----------cccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCC-CCC----------
Confidence            999999999998772 12          67899999999999998887789999999999999964 322          


Q ss_pred             ccccCCcccccccccccccccc
Q 017525          278 AEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       278 ~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                          ..+..+++|+.|+|++|.
T Consensus       191 ----~~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          191 ----RALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             ----GGGTTCTTCSEEECCSEE
T ss_pred             ----hHHccCCCCCEEEccCCc
Confidence                257788999999999884

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.64  E-value=7.4e-17  Score=157.10  Aligned_cols=106  Identities=18%  Similarity=0.146  Sum_probs=55.5

Q ss_pred             CCCCCCCEEecCCCc-CCCC---C-----------hHHHhcCCCCcEEEccCCC---cchhhhh-ccccCCEEeccCC-c
Q 017525           12 PVCPRLRTLFLSSNI-FHRV---N-----------SDFFQSMASLRVLKWSYSN---PLLFEIS-KVVSLQHLDLSHS-R   71 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~-i~~~---~-----------~~~~~~l~~L~~L~l~~~~---~~~~~~~-~l~~L~~L~l~~~-~   71 (370)
                      ..+++|+.|+++++. +..+   +           ..+...+++|++|++++|.   ..+..+. .+++|++|++++| .
T Consensus        63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  142 (594)
T 2p1m_B           63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG  142 (594)
T ss_dssp             HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred             hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence            346666777666652 2211   1           1223456667777766665   2233332 4666667766666 4


Q ss_pred             ccc--cCcccccCCcccEEeccCcccccccCc----ccccCCCCCcEEEcccc
Q 017525           72 IES--LPIEFKCLVNLKCLNLEYTYGISRIPP----KVISNLKILETLRMYEC  118 (370)
Q Consensus        72 l~~--lp~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~  118 (370)
                      ++.  ++.....+++|++|++++|. ++....    .....+++|+.|++++|
T Consensus       143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~  194 (594)
T 2p1m_B          143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCL  194 (594)
T ss_dssp             EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred             CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEeccc
Confidence            432  44444466666666666663 222111    11235556666666665

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=2.4e-15  Score=131.09  Aligned_cols=131  Identities=19%  Similarity=0.202  Sum_probs=105.8

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      ++.+++++....+++|+.|++++|.++.++.  +..+++|++|++++|.  .++. +..+++|++|++++|.++.+|...
T Consensus        28 ~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~  104 (263)
T 1xeu_A           28 KQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP  104 (263)
T ss_dssp             CSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC
T ss_pred             CCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc
Confidence            4667788866889999999999999998883  7999999999999999  5655 899999999999999999887644


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEec
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLN  154 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~  154 (370)
                      .  ++|+.|++++| .++.++.  +.++++|++|++++| .++.+             ..+..+++|+.|++++|
T Consensus       105 ~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N-~i~~~-------------~~l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A          105 S--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNN-KLKSI-------------VMLGFLSKLEVLDLHGN  160 (263)
T ss_dssp             C--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTS-CCCBC-------------GGGGGCTTCCEEECTTS
T ss_pred             c--CcccEEEccCC-ccCCChh--hcCcccccEEECCCC-cCCCC-------------hHHccCCCCCEEECCCC
Confidence            3  99999999999 5666653  899999999999999 66521             23445555555555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.4e-15  Score=126.66  Aligned_cols=83  Identities=22%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             hcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEE
Q 017525           36 QSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETL  113 (370)
Q Consensus        36 ~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L  113 (370)
                      ..+++|++|+++++.  .+| .+..+++|++|++++|.++.++ .+..+++|++|++++|...+..+.. ++++++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEE
Confidence            566777777777776  445 5677777777777777666554 5667777777777777433334443 7777778888


Q ss_pred             EccccCCCc
Q 017525          114 RMYECAALP  122 (370)
Q Consensus       114 ~l~~~~~~~  122 (370)
                      ++++| .+.
T Consensus       118 ~Ls~n-~i~  125 (197)
T 4ezg_A          118 DISHS-AHD  125 (197)
T ss_dssp             ECCSS-BCB
T ss_pred             EecCC-ccC
Confidence            87777 443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=3.7e-15  Score=126.29  Aligned_cols=143  Identities=19%  Similarity=0.251  Sum_probs=120.5

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|+.|++++|.++.+++..+..+++|++|++++|.   ..|..+.++++|++|++++|.++.+|..
T Consensus        20 ~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~   98 (220)
T 2v9t_B           20 GKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKS   98 (220)
T ss_dssp             TSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred             CCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence            4678888875 23799999999999999888778999999999999998   4578899999999999999999988875


Q ss_pred             -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                       +..+++|+.|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.+++.+|...
T Consensus        99 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIA-----------KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSSCEE
T ss_pred             HccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCC-cCCEEC-----------HHHHhCCCCCCEEEeCCCCcC
Confidence             578999999999999 566665555999999999999999 776433           345677889999999988764


Q ss_pred             h
Q 017525          158 A  158 (370)
Q Consensus       158 ~  158 (370)
                      .
T Consensus       166 c  166 (220)
T 2v9t_B          166 C  166 (220)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.62  E-value=4.9e-15  Score=142.18  Aligned_cols=185  Identities=16%  Similarity=0.176  Sum_probs=113.8

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~   93 (370)
                      +|+.|++++|.++.+|..+   .++|++|++++|.  .+|   ..+++|++|++++|.++.+|. +..  +|+.|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            6677777777666666542   3567777777776  455   345677777777777766665 443  6777777776


Q ss_pred             ccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcccc
Q 017525           94 YGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST  173 (370)
Q Consensus        94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L  173 (370)
                       .++.+|.    .+++|+.|++++| .++.+|         .      .+++|+.|++++|.+..+              
T Consensus       131 -~l~~lp~----~l~~L~~L~Ls~N-~l~~lp---------~------~l~~L~~L~Ls~N~L~~l--------------  175 (571)
T 3cvr_A          131 -QLTMLPE----LPALLEYINADNN-QLTMLP---------E------LPTSLEVLSVRNNQLTFL--------------  175 (571)
T ss_dssp             -CCSCCCC----CCTTCCEEECCSS-CCSCCC---------C------CCTTCCEEECCSSCCSCC--------------
T ss_pred             -cCCCCCC----cCccccEEeCCCC-ccCcCC---------C------cCCCcCEEECCCCCCCCc--------------
Confidence             3444554    4666777777766 554322         1      235555555554432211              


Q ss_pred             CcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc-ccCCCC
Q 017525          174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW-LFLAPN  252 (370)
Q Consensus       174 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-l~~l~~  252 (370)
                                      +.+.  ++|+.|++++|.++.++. + +....    ...+.|+.|++++|+++.++. +..+++
T Consensus       176 ----------------p~l~--~~L~~L~Ls~N~L~~lp~-~-~~~L~----~~~~~L~~L~Ls~N~l~~lp~~l~~l~~  231 (571)
T 3cvr_A          176 ----------------PELP--ESLEALDVSTNLLESLPA-V-PVRNH----HSEETEIFFRCRENRITHIPENILSLDP  231 (571)
T ss_dssp             ----------------CCCC--TTCCEEECCSSCCSSCCC-C-C------------CCEEEECCSSCCCCCCGGGGGSCT
T ss_pred             ----------------chhh--CCCCEEECcCCCCCchhh-H-HHhhh----cccccceEEecCCCcceecCHHHhcCCC
Confidence                            1122  688999999988887765 2 10000    112333999999998888764 667899


Q ss_pred             ccEEeeccCcchHHhh
Q 017525          253 LKRVEIDNCQDMKEII  268 (370)
Q Consensus       253 L~~L~L~~~~~~~~~~  268 (370)
                      |+.|+|++|.....++
T Consensus       232 L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          232 TCTIILEDNPLSSRIR  247 (571)
T ss_dssp             TEEEECCSSSCCHHHH
T ss_pred             CCEEEeeCCcCCCcCH
Confidence            9999999988655543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.59  E-value=5.1e-15  Score=123.19  Aligned_cols=148  Identities=15%  Similarity=0.143  Sum_probs=106.2

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccc-cCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~   89 (370)
                      .++++|+.|++++|.++.++.  +..+++|++|++++|. ..+..+..+++|++|++++|.++. .+..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCccChHH--HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            567788888888888887773  7888888888888887 555577788888888888888864 566778888888888


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +++|...+..+.. ++++++|++|++++|..++.+             ..+..+++|+.|++++|.+..++.+....+  
T Consensus       119 Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~~~-------------~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~--  182 (197)
T 4ezg_A          119 ISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDI-------------MPLKTLPELKSLNIQFDGVHDYRGIEDFPK--  182 (197)
T ss_dssp             CCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCCCC-------------GGGGGCSSCCEEECTTBCCCCCTTGGGCSS--
T ss_pred             ecCCccCcHhHHH-HhhCCCCCEEEccCCCCcccc-------------HhhcCCCCCCEEECCCCCCcChHHhccCCC--
Confidence            8888444434443 788888888888888225421             246677888888888887766654444433  


Q ss_pred             ccccCcEEecC
Q 017525          170 YVSTPSLCLSH  180 (370)
Q Consensus       170 ~l~L~~l~l~~  180 (370)
                         |+.+.+.+
T Consensus       183 ---L~~L~l~~  190 (197)
T 4ezg_A          183 ---LNQLYAFS  190 (197)
T ss_dssp             ---CCEEEECB
T ss_pred             ---CCEEEeeC
Confidence               55565554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=1.7e-14  Score=123.04  Aligned_cols=141  Identities=21%  Similarity=0.278  Sum_probs=115.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|+.|++++|.++.+++..+.++++|++|++++|.  .+| ..+..+++|++|++++|.++.++..
T Consensus        28 ~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~  106 (229)
T 3e6j_A           28 SKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA  106 (229)
T ss_dssp             TSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence            4567777775 34899999999999998877668999999999999998  555 4568899999999999999888764


Q ss_pred             -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                       +..+++|+.|++++| .+..+|.. +.++++|++|++++| .+..++           ...+..+++|+.+++.+|...
T Consensus       107 ~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQN-QLKSIP-----------HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             TTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECTTSCBC
T ss_pred             HhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCC-cCCccC-----------HHHHhCCCCCCEEEeeCCCcc
Confidence             678999999999998 66788876 889999999999999 776433           245677889999999888653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=2.7e-14  Score=119.86  Aligned_cols=88  Identities=15%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             ccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCc--ccCCCCccEEeeccCcchHHhhh
Q 017525          192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATW--LFLAPNLKRVEIDNCQDMKEIID  269 (370)
Q Consensus       192 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--l~~l~~L~~L~L~~~~~~~~~~~  269 (370)
                      +..+++|++|++++|.++.++...+         ..+++|++|++++|+++.++.  +..+++|+.|++++|.       
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-------  159 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLPDGVF---------DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP-------  159 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTT---------TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC-------
T ss_pred             hcCccCCCEEEcCCCcCcccCHhHh---------ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC-------
Confidence            4556677777777777776654432         456777777777776666543  5667778888887774       


Q ss_pred             ccccCCCcccccCCccccccccccccccccccccccCCC
Q 017525          270 SEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKA  308 (370)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~  308 (370)
                                   ....+|+|+.|.++.+..-..++...
T Consensus       160 -------------~~~~~~~l~~L~~~~n~~~g~ip~~~  185 (208)
T 2o6s_A          160 -------------WDCTCPGIRYLSEWINKHSGVVRNSA  185 (208)
T ss_dssp             -------------BCCCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred             -------------eecCCCCHHHHHHHHHhCCceeeccC
Confidence                         22355677777776654333444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.56  E-value=4.6e-14  Score=118.43  Aligned_cols=140  Identities=24%  Similarity=0.295  Sum_probs=111.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      ++.++.+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.  .++ ..+..+++|++|++++|.++.+|..
T Consensus        16 ~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           16 SQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             SSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            3556667654 45789999999999998888778899999999999998  444 4468899999999999999887764


Q ss_pred             -cccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           79 -FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                       ++.+++|++|++++| .+..++...+.++++|++|++++| .+..++           ...+..+++|+.+++++|.
T Consensus        95 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A           95 VFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVP-----------DGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSCC
T ss_pred             HhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeC-----------HHHhccCCCccEEEecCCC
Confidence             688999999999998 566677666889999999999999 676432           2335667788888777663

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.56  E-value=3.3e-14  Score=120.43  Aligned_cols=142  Identities=20%  Similarity=0.298  Sum_probs=115.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCC-ChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRV-NSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      +|.++.+|.. -.+.++.|++++|.++.+ +..++..+++|++|++++|.  .+ +..+..+++|++|++++|.++.++.
T Consensus        20 ~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           20 NQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             SSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred             CCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence            4678888874 345678999999999877 44557899999999999998  34 4578999999999999999987776


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       .+..+++|++|++++| .+..++...+.++++|++|++++| .+..+           ....+..+++|+.+++++|..
T Consensus        99 ~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-----------~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QITTV-----------APGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCCCB-----------CTTTTTTCTTCCEEECCSCCE
T ss_pred             hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCCEE-----------CHHHhcCCCCCCEEEecCcCC
Confidence             4889999999999999 555554445899999999999999 77632           245677889999999998876


Q ss_pred             h
Q 017525          157 H  157 (370)
Q Consensus       157 ~  157 (370)
                      .
T Consensus       166 ~  166 (220)
T 2v70_A          166 N  166 (220)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.54  E-value=4.7e-14  Score=135.37  Aligned_cols=175  Identities=17%  Similarity=0.197  Sum_probs=133.5

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +|.++.+|... +++|+.|++++|.|+.+|    ..+++|++|++++|.  .+|. +..  +|++|++++|.++.+|.  
T Consensus        68 ~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--  137 (571)
T 3cvr_A           68 RLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--  137 (571)
T ss_dssp             SSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--
T ss_pred             CCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--
Confidence            56788888753 489999999999999888    357999999999998  7776 554  99999999999999987  


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                       .+++|+.|++++| .+..+|.    .+++|++|++++| .++.+|         .    +.  ++|+.|+++.|.+..+
T Consensus       138 -~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N-~L~~lp---------~----l~--~~L~~L~Ls~N~L~~l  195 (571)
T 3cvr_A          138 -LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNN-QLTFLP---------E----LP--ESLEALDVSTNLLESL  195 (571)
T ss_dssp             -CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSCCC---------C----CC--TTCCEEECCSSCCSSC
T ss_pred             -cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCC-CCCCcc---------h----hh--CCCCEEECcCCCCCch
Confidence             7899999999999 5566765    5789999999999 777544         2    33  7899999888875543


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +.+.      . +|                  ....+.|+.|++++|.++.++...          ..+++|++|+|++|
T Consensus       196 p~~~------~-~L------------------~~~~~~L~~L~Ls~N~l~~lp~~l----------~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          196 PAVP------V-RN------------------HHSEETEIFFRCRENRITHIPENI----------LSLDPTCTIILEDN  240 (571)
T ss_dssp             CCCC---------------------------------CCEEEECCSSCCCCCCGGG----------GGSCTTEEEECCSS
T ss_pred             hhHH------H-hh------------------hcccccceEEecCCCcceecCHHH----------hcCCCCCEEEeeCC
Confidence            3200      0 01                  122345688999999888876544          34888999999998


Q ss_pred             cccc
Q 017525          240 KFRH  243 (370)
Q Consensus       240 ~l~~  243 (370)
                      .+++
T Consensus       241 ~l~~  244 (571)
T 3cvr_A          241 PLSS  244 (571)
T ss_dssp             SCCH
T ss_pred             cCCC
Confidence            7765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.54  E-value=6.8e-14  Score=118.43  Aligned_cols=97  Identities=19%  Similarity=0.250  Sum_probs=60.7

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc-CcccccCCcccEEeccCc
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~   93 (370)
                      +.++++++.++.+|..+   .++|++|++++|.  .+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            56777777777776541   2566777777666  33 23556666677777777666654 445666666666666666


Q ss_pred             ccccccCcccccCCCCCcEEEcccc
Q 017525           94 YGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        94 ~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                       .+..++..++.++++|++|++++|
T Consensus        91 -~l~~l~~~~f~~l~~L~~L~L~~N  114 (220)
T 2v9t_B           91 -KITELPKSLFEGLFSLQLLLLNAN  114 (220)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             -cCCccCHhHccCCCCCCEEECCCC
Confidence             455555554566666666666666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=1.1e-13  Score=117.81  Aligned_cols=119  Identities=23%  Similarity=0.336  Sum_probs=105.5

Q ss_pred             CcccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      +|.|+.+++.  ..+++|+.|++++|.++.++...+..+++|++|++++|.  .++ ..+..+++|++|++++|+++.+|
T Consensus        49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp  128 (229)
T 3e6j_A           49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELP  128 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccC
Confidence            5778888654  789999999999999999998878999999999999999  444 45688999999999999999999


Q ss_pred             cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           77 IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      ..+..+++|+.|++++| .+..++...+..+++|+.|++.+| .+.
T Consensus       129 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~~~  172 (229)
T 3e6j_A          129 RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN-PWD  172 (229)
T ss_dssp             TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CBC
T ss_pred             cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC-Ccc
Confidence            99999999999999999 667777666999999999999999 543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.2e-13  Score=125.93  Aligned_cols=146  Identities=20%  Similarity=0.230  Sum_probs=101.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHh-cCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQ-SMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      ++.++.+|.. -.+.++.|++++|.|+.++...+. ++++|++|++++|.  .+ +..+..+++|++|++++|.++.++.
T Consensus        27 ~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~  105 (361)
T 2xot_A           27 KQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDE  105 (361)
T ss_dssp             SSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCH
Confidence            4566777764 235578888888888877776566 78888888888887  33 3567888888888888888877765


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecch
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNF  156 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~  156 (370)
                       .+..+++|+.|++++| .+..++...+.++++|++|++++| .+..++.        ..+..+..+++|+.|+++.|.+
T Consensus       106 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~--------~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV--------ELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCSCCG--------GGTC----CTTCCEEECCSSCC
T ss_pred             HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cCCeeCH--------HHhcCcccCCcCCEEECCCCCC
Confidence             4678888888888888 455554445888888888888888 6664431        1122225567777777777654


Q ss_pred             hh
Q 017525          157 HA  158 (370)
Q Consensus       157 ~~  158 (370)
                      ..
T Consensus       176 ~~  177 (361)
T 2xot_A          176 KK  177 (361)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.48  E-value=2.3e-16  Score=151.90  Aligned_cols=203  Identities=17%  Similarity=0.158  Sum_probs=129.0

Q ss_pred             hccccCCEEeccCCcccccCcccccCCcccEEeccCccc-------------ccccCcccccCCCCCcEEE-ccccCCCc
Q 017525           57 SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYG-------------ISRIPPKVISNLKILETLR-MYECAALP  122 (370)
Q Consensus        57 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~  122 (370)
                      ..+++|+.|++++|+++.+|..++.+++|+.|+++++..             .+..|. .++++++|+.|+ +..+ .+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n-~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAA-YLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHH-HHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhc-ccc
Confidence            456778888888888888888888888888888866531             111111 234444444444 2222 111


Q ss_pred             ccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEE
Q 017525          123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQ  202 (370)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~  202 (370)
                                            .|+.+.+..+.+..++.   .      .++.|.++++.-.. .  +.+..+++|+.|+
T Consensus       424 ----------------------~L~~l~l~~n~i~~l~~---~------~L~~L~Ls~n~l~~-l--p~~~~l~~L~~L~  469 (567)
T 1dce_A          424 ----------------------DLRSKFLLENSVLKMEY---A------DVRVLHLAHKDLTV-L--CHLEQLLLVTHLD  469 (567)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHH---T------TCSEEECTTSCCSS-C--CCGGGGTTCCEEE
T ss_pred             ----------------------hhhhhhhhcccccccCc---c------CceEEEecCCCCCC-C--cCccccccCcEee
Confidence                                  11111111111111111   0      25556665543222 2  3477888999999


Q ss_pred             EecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccC
Q 017525          203 LTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMA  282 (370)
Q Consensus       203 l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~  282 (370)
                      +++|.++.++..+          ..+++|++|+|++|++++++.++.+++|+.|+|++|.... +.           .+.
T Consensus       470 Ls~N~l~~lp~~~----------~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~-~~-----------~p~  527 (567)
T 1dce_A          470 LSHNRLRALPPAL----------AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQ-SA-----------AIQ  527 (567)
T ss_dssp             CCSSCCCCCCGGG----------GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCS-SS-----------TTG
T ss_pred             cCcccccccchhh----------hcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCC-CC-----------CcH
Confidence            9999998776544          6789999999999998888888889999999999987432 21           034


Q ss_pred             CccccccccccccccccccccccCCCc----cCCCcceEe
Q 017525          283 NLIPFARLERLILEELKNLKTVHSKAL----PFPHLKEMS  318 (370)
Q Consensus       283 ~~~~~p~L~~L~l~~~~~l~~i~~~~~----~~~~L~~L~  318 (370)
                      .+..+++|+.|+++++ .++.++....    .+|+|+.|+
T Consensus       528 ~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          528 PLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             HHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence            7788999999999987 4666544322    278888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.47  E-value=6.2e-14  Score=113.45  Aligned_cols=135  Identities=19%  Similarity=0.236  Sum_probs=108.1

Q ss_pred             CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc-cCcccccCCccc
Q 017525           12 PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLK   86 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~   86 (370)
                      ...++|+.|++++|.++  .+|.. +..+++|++|++++|.  .+ ..+..+++|++|++++|.++. +|..+..+++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            45688999999999988  77765 7899999999999998  44 778889999999999999986 776777799999


Q ss_pred             EEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           87 CLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        87 ~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                      .|++++| .+..++. ..+..+++|++|++++| .+..++        ......+..+++|+.+++..+....
T Consensus        99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~--------~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A           99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNC-EVTNLN--------DYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSS-GGGTST--------THHHHHHTTCSSCCEETTEETTSCB
T ss_pred             EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCC-cCcchH--------HHHHHHHHhCccCcEecCCCCChhh
Confidence            9999999 5666552 34899999999999999 776432        0112367778899988888776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.45  E-value=2e-13  Score=124.50  Aligned_cols=143  Identities=26%  Similarity=0.328  Sum_probs=117.2

Q ss_pred             CcccccccCC--C-CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCccccc
Q 017525            2 TNHIENLVES--P-VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         2 ~n~l~~l~~~--~-~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +|.|+.++..  . .+++|+.|++++|.|+.+++..|.++++|++|++++|.  .+ +..+..+++|++|++++|.++.+
T Consensus        48 ~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~  127 (361)
T 2xot_A           48 HNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV  127 (361)
T ss_dssp             SSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEE
Confidence            5788888876  3 89999999999999999888778999999999999999  44 45688999999999999999877


Q ss_pred             -CcccccCCcccEEeccCcccccccCcccc---cCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCC--ccEE
Q 017525           76 -PIEFKCLVNLKCLNLEYTYGISRIPPKVI---SNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEH--LSVF  149 (370)
Q Consensus        76 -p~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--L~~l  149 (370)
                       |..+..+++|+.|++++| .+..+|...+   ..+++|++|++++| .+..++           ...+..++.  ++.+
T Consensus       128 ~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~-----------~~~~~~l~~~~l~~l  194 (361)
T 2xot_A          128 DRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP-----------LTDLQKLPAWVKNGL  194 (361)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC-----------HHHHHHSCHHHHTTE
T ss_pred             CHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC-----------HHHhhhccHhhcceE
Confidence             457889999999999999 6777887655   67999999999999 777543           234455554  4778


Q ss_pred             EEEecchh
Q 017525          150 TITLNNFH  157 (370)
Q Consensus       150 ~l~~~~~~  157 (370)
                      ++.+|...
T Consensus       195 ~l~~N~~~  202 (361)
T 2xot_A          195 YLHNNPLE  202 (361)
T ss_dssp             ECCSSCEE
T ss_pred             EecCCCcc
Confidence            88887654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.45  E-value=4.3e-13  Score=113.48  Aligned_cols=119  Identities=20%  Similarity=0.269  Sum_probs=102.1

Q ss_pred             CcccccccCC---CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCccccc
Q 017525            2 TNHIENLVES---PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         2 ~n~l~~l~~~---~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +|.|+.++..   ..+++|+.|++++|.++.+++..+.++++|++|++++|.   ..+..+..+++|++|++++|.++.+
T Consensus        41 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  120 (220)
T 2v70_A           41 NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCV  120 (220)
T ss_dssp             SSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCB
T ss_pred             CCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeE
Confidence            5778888542   689999999999999999888779999999999999999   4455688999999999999999877


Q ss_pred             -CcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           76 -PIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        76 -p~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                       |..+..+++|+.|++++| .+..++...+..+++|+.|++++| .+.
T Consensus       121 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~  166 (220)
T 2v70_A          121 GNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLAN-PFN  166 (220)
T ss_dssp             CTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSC-CEE
T ss_pred             CHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCc-CCc
Confidence             557889999999999999 556664445999999999999999 553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.44  E-value=1.1e-12  Score=108.60  Aligned_cols=100  Identities=23%  Similarity=0.289  Sum_probs=48.3

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcc
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTY   94 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~   94 (370)
                      ++++++++.++.+|..+   .++|++|++++|.  .+|..+..+++|++|++++|.++.++. .+..+++|+.|++++| 
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-   88 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-
Confidence            34455555555444431   1345555555554  444445555555555555555544433 3445555555555555 


Q ss_pred             cccccCcccccCCCCCcEEEccccCCCc
Q 017525           95 GISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        95 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      .+..++...+.++++|++|++++| .+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N-~l~  115 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGN-DIS  115 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSS-CCC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCC-CCC
Confidence            333333333555555555555555 443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.44  E-value=2.1e-13  Score=110.29  Aligned_cols=120  Identities=23%  Similarity=0.203  Sum_probs=103.0

Q ss_pred             Ccccc--cccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCccccc
Q 017525            2 TNHIE--NLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         2 ~n~l~--~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +|.++  .+|.. ..+++|++|++++|.++.+ . .+..+++|++|++++|.  . +|..+..+++|++|++++|.++.+
T Consensus        33 ~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  110 (168)
T 2ell_A           33 NCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI  110 (168)
T ss_dssp             SCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSS
T ss_pred             CCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcc
Confidence            46777  78887 7899999999999999888 3 37999999999999999  4 777778899999999999999987


Q ss_pred             C--cccccCCcccEEeccCcccccccCc---ccccCCCCCcEEEccccCCCcccc
Q 017525           76 P--IEFKCLVNLKCLNLEYTYGISRIPP---KVISNLKILETLRMYECAALPQAR  125 (370)
Q Consensus        76 p--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~  125 (370)
                      |  ..++.+++|+.|++++| .+..++.   ..+..+++|++|++.+| ....++
T Consensus       111 ~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~  163 (168)
T 2ell_A          111 STLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAP  163 (168)
T ss_dssp             GGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCC
T ss_pred             hhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC-Chhhcc
Confidence            6  67889999999999999 5566665   45899999999999999 665444

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.43  E-value=2.3e-13  Score=110.96  Aligned_cols=139  Identities=14%  Similarity=0.164  Sum_probs=111.5

Q ss_pred             cCCCCCCCCCEEecCCCcCCCCChHHHhcC-CCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc-ccCCc
Q 017525            9 VESPVCPRLRTLFLSSNIFHRVNSDFFQSM-ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF-KCLVN   84 (370)
Q Consensus         9 ~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l-~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~-~~l~~   84 (370)
                      +...++++|+.|++++|.++.++.  +..+ ++|++|++++|.  .+ ..+..+++|++|++++|.++.+|..+ +.+++
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~--~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIEN--LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCC--GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhcCCcCCceEEEeeCCCCchhHH--hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            333678999999999999998865  4444 499999999999  44 68889999999999999999888765 89999


Q ss_pred             ccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhH
Q 017525           85 LKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQ  160 (370)
Q Consensus        85 L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~  160 (370)
                      |+.|++++| .++.++. ..+..+++|++|++++| .+..++        ......+..+++|+.++++.+......
T Consensus        90 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~--------~~~~~~~~~l~~L~~Ld~~~n~~~~~~  156 (176)
T 1a9n_A           90 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKK--------HYRLYVIYKVPQVRVLDFQKVKLKERQ  156 (176)
T ss_dssp             CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGST--------THHHHHHHHCTTCSEETTEECCHHHHH
T ss_pred             CCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCC-CCCCcH--------hHHHHHHHHCCccceeCCCcCCHHHHH
Confidence            999999999 5677765 23889999999999999 776433        011224678899999999988765543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=9.3e-13  Score=108.96  Aligned_cols=114  Identities=23%  Similarity=0.292  Sum_probs=60.7

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChH-HHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSD-FFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      |.++.+|.. -.++|+.|++++|.++.++.. ++..+++|++|++++|.   ..|..+..+++|++|++++|+++.++. 
T Consensus        18 ~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~   96 (192)
T 1w8a_A           18 RGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK   96 (192)
T ss_dssp             SCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred             CCcCcCccC-CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHH
Confidence            445555543 122566666666655555442 34556666666666665   234555556666666666666554443 


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      .++.+++|++|++++|. +..++...+..+++|++|++++|
T Consensus        97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           97 MFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTC
T ss_pred             HhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCC
Confidence            25555666666666652 33232222555666666666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=1.6e-13  Score=108.58  Aligned_cols=128  Identities=18%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             CCCCCCCEEecCCCcCC--CCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccc-cCcccccCCccc
Q 017525           12 PVCPRLRTLFLSSNIFH--RVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIES-LPIEFKCLVNLK   86 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~   86 (370)
                      ...++|+.|++++|.++  .++.. +..+++|++|++++|.  .+ ..++.+++|++|++++|.++. +|..++.+++|+
T Consensus        14 ~~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           14 RTPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CCGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            45688999999999988  67764 7899999999999998  44 778899999999999999986 777777899999


Q ss_pred             EEeccCcccccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEE
Q 017525           87 CLNLEYTYGISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTI  151 (370)
Q Consensus        87 ~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l  151 (370)
                      +|++++| .+..++ ...++.+++|++|++++| .+..++        ......+..+++|+.+++
T Consensus        92 ~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~--------~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           92 HLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNC-EVTNLN--------DYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EEECTTS-CCCSHHHHGGGGGCTTCCEEECTTC-GGGGST--------THHHHHHHHCTTCCEETT
T ss_pred             EEECCCC-cCCChHHHHHHhhCCCCCEEeCcCC-cccchH--------HHHHHHHHHCCCcccccC
Confidence            9999999 455543 133899999999999999 776432        011135666777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.41  E-value=2e-12  Score=105.42  Aligned_cols=114  Identities=22%  Similarity=0.313  Sum_probs=70.5

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE-   78 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-   78 (370)
                      +.++.+|.. -.++|+.|++++|.++.++...+..+++|++|++++|.  .++ ..+..+++|++|++++|.++.+|.. 
T Consensus        17 ~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   95 (177)
T 2o6r_A           17 KGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGV   95 (177)
T ss_dssp             SCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHH
Confidence            445555543 33566777777766666666555666677777777666  333 3346666677777777766655553 


Q ss_pred             cccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           79 FKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        79 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      ++.+++|+.|++++| .+..++...+.++++|++|++++|
T Consensus        96 ~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           96 FDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             hhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCC
Confidence            456666777777666 445555554566666777776666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=5.2e-13  Score=105.67  Aligned_cols=112  Identities=24%  Similarity=0.235  Sum_probs=96.8

Q ss_pred             Ccccc--cccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCccccc
Q 017525            2 TNHIE--NLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         2 ~n~l~--~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      +|.++  .+|.. ..+++|+.|++++|.++.+ . .+..+++|++|++++|.  . +|..+..+++|++|++++|.++.+
T Consensus        26 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~  103 (149)
T 2je0_A           26 NSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-A-NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL  103 (149)
T ss_dssp             TCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-T-TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSH
T ss_pred             CCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-h-hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCCh
Confidence            46677  77877 7899999999999999888 3 37999999999999999  4 788888899999999999999876


Q ss_pred             C--cccccCCcccEEeccCcccccccCc---ccccCCCCCcEEEcc
Q 017525           76 P--IEFKCLVNLKCLNLEYTYGISRIPP---KVISNLKILETLRMY  116 (370)
Q Consensus        76 p--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~  116 (370)
                      |  ..++.+++|++|++++| .+..++.   ..+..+++|+.|+++
T Consensus       104 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          104 STIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             HHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             HHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            5  67899999999999999 5566665   458899999999875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=3.1e-12  Score=105.83  Aligned_cols=116  Identities=23%  Similarity=0.323  Sum_probs=101.5

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc-
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      +|.++.+|.. -.++|+.|++++|.++.+|.. +.++++|++|++++|.   ..+..+.++++|++|++++|.++.++. 
T Consensus        19 ~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   96 (193)
T 2wfh_A           19 NKGLKVLPKG-IPRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPR   96 (193)
T ss_dssp             TSCCSSCCSC-CCTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CCCCCcCCCC-CCCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHH
Confidence            5678888875 347999999999999999865 8999999999999999   444678999999999999999998876 


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCC
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAAL  121 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  121 (370)
                      .+..+++|+.|++++| .+..++..++..+++|+.|++.+| .+
T Consensus        97 ~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~~  138 (193)
T 2wfh_A           97 TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN-PL  138 (193)
T ss_dssp             TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS-CE
T ss_pred             HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC-Ce
Confidence            6889999999999999 677788777999999999999999 44

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=2.7e-12  Score=106.18  Aligned_cols=124  Identities=19%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh--hhhccccCCEEeccCCccccc-CcccccCCcccEEeccC
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF--EISKVVSLQHLDLSHSRIESL-PIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~--~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~   92 (370)
                      +.++++++.++.+|..+   ..+|++|+++++.  .++.  .+..+++|++|++++|.++.+ |..++.+++|+.|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            78999999999998753   2389999999999  5554  388999999999999999876 56789999999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      | .+..++...+.++++|++|++++| .+..           ..+..+..+++|+.+++++|...
T Consensus        88 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           88 N-KIKEISNKMFLGLHQLKTLNLYDN-QISC-----------VMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCCEECSSSSTTCTTCCEEECCSS-CCCE-----------ECTTSSTTCTTCCEEECTTCCBC
T ss_pred             C-cCCccCHHHhcCCCCCCEEECCCC-cCCe-----------eCHHHhhcCCCCCEEEeCCCCcc
Confidence            9 566666656899999999999999 7763           22456778899999999988754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.36  E-value=4.6e-12  Score=113.98  Aligned_cols=98  Identities=10%  Similarity=0.091  Sum_probs=54.6

Q ss_pred             cCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCcc-EEeeccCcchHHhhhcc
Q 017525          195 LRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLK-RVEIDNCQDMKEIIDSE  271 (370)
Q Consensus       195 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~-~L~L~~~~~~~~~~~~~  271 (370)
                      +++|+.+++++|.++.++...+         ..+++|+.|++.++ ++.+  .++..+.+|+ .|++.+  .++.+.   
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF---------~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~---  289 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTF---------AQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIE---  289 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTT---------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEEC---
T ss_pred             cCCCeEEECCCCCcceecHhhh---------hCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEc---
Confidence            5667777777666666655444         45667777777665 4333  2355666676 676665  233331   


Q ss_pred             ccCCCcccccCCccccccccccccccccccccccCCCc-cCCCcceE
Q 017525          272 KFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKAL-PFPHLKEM  317 (370)
Q Consensus       272 ~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~-~~~~L~~L  317 (370)
                               ...+..+++|+.+.+.+. .++.|..... .+++|+.+
T Consensus       290 ---------~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          290 ---------FGAFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             ---------TTTTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEE
T ss_pred             ---------hhhhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhh
Confidence                     135566666776666543 4555544322 24444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=7.1e-11  Score=108.83  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~   93 (370)
                      +|+.+.+..+ ++.++..+|.++ +|+.+.+...-  .-...|.+|++|+.+++..++++.++.....+.+|+.+.+..+
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~  213 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT  213 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence            4555555443 444444444443 35555554422  2223444555555555555555555443333455555555432


Q ss_pred             ccccccCcccccCCCCCcEEEccc
Q 017525           94 YGISRIPPKVISNLKILETLRMYE  117 (370)
Q Consensus        94 ~~~~~~~~~~~~~l~~L~~L~l~~  117 (370)
                        +..++..+|.++++|+.+++..
T Consensus       214 --l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          214 --LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             --CCEECTTTTTTCTTCCCEECCT
T ss_pred             --hheehhhHhhCCCCCCEEecCC
Confidence              4444444455555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.33  E-value=3.2e-12  Score=126.82  Aligned_cols=107  Identities=25%  Similarity=0.237  Sum_probs=91.5

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..++.|+.|+|++|.+..++.. +..+++|++|+|++|.  .+|..++.+++|++|+|++|.++.+|..++.+++|++|+
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             ccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            6788899999999988888877 4588999999999988  788888889999999999998888888888899999999


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +++| .++.+|.. |+++++|++|++++| .+.
T Consensus       300 L~~N-~l~~lp~~-~~~l~~L~~L~L~~N-~l~  329 (727)
T 4b8c_D          300 FFDN-MVTTLPWE-FGNLCNLQFLGVEGN-PLE  329 (727)
T ss_dssp             CCSS-CCCCCCSS-TTSCTTCCCEECTTS-CCC
T ss_pred             CCCC-CCCccChh-hhcCCCccEEeCCCC-ccC
Confidence            9988 56788876 888999999999988 665

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=5.4e-12  Score=121.50  Aligned_cols=103  Identities=17%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYT   93 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~   93 (370)
                      .|+.|++++|.++.+|.  +..+++|++|++++|.  .+|..++.+++|++|++++|.++.+| .++.+++|+.|++++|
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN  518 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence            48888888888888875  7888888888888888  77888888888888888888888887 7888888888888888


Q ss_pred             cccccc--CcccccCCCCCcEEEccccCCCccc
Q 017525           94 YGISRI--PPKVISNLKILETLRMYECAALPQA  124 (370)
Q Consensus        94 ~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~  124 (370)
                       .+..+  |.. ++++++|+.|++++| .+...
T Consensus       519 -~l~~~~~p~~-l~~l~~L~~L~L~~N-~l~~~  548 (567)
T 1dce_A          519 -RLQQSAAIQP-LVSCPRLVLLNLQGN-SLCQE  548 (567)
T ss_dssp             -CCCSSSTTGG-GGGCTTCCEEECTTS-GGGGS
T ss_pred             -CCCCCCCcHH-HhcCCCCCEEEecCC-cCCCC
Confidence             45555  554 888888888888888 66543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.33  E-value=1.5e-12  Score=106.10  Aligned_cols=117  Identities=15%  Similarity=0.142  Sum_probs=98.6

Q ss_pred             CcccccccCCCCC-CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESPVC-PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l-~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      +|.++.++....+ ++|+.|++++|.++.++ . +..+++|++|++++|.  .+|.. +..+++|++|++++|.++.+|.
T Consensus        28 ~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~  105 (176)
T 1a9n_A           28 GYKIPVIENLGATLDQFDAIDFSDNEIRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGD  105 (176)
T ss_dssp             TSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGG
T ss_pred             CCCCchhHHhhhcCCCCCEEECCCCCCCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchh
Confidence            5778888766454 59999999999998873 3 7899999999999999  56644 4899999999999999998887


Q ss_pred             --ccccCCcccEEeccCcccccccCcc---cccCCCCCcEEEccccCCCc
Q 017525           78 --EFKCLVNLKCLNLEYTYGISRIPPK---VISNLKILETLRMYECAALP  122 (370)
Q Consensus        78 --~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~  122 (370)
                        .++.+++|+.|++++| .+..++..   ++..+++|+.|++++| ...
T Consensus       106 ~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~  153 (176)
T 1a9n_A          106 LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK  153 (176)
T ss_dssp             GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred             hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence              7889999999999999 55666653   4889999999999988 443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.28  E-value=2.5e-11  Score=98.88  Aligned_cols=125  Identities=22%  Similarity=0.218  Sum_probs=103.4

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcc-cccCCcccEEeccC
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEY   92 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~   92 (370)
                      .+.++++++.++.+|..   ..++|++|+++++.  .++ ..+..+++|++|++++|.++.+|.. ++.+++|+.|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            57899999999998864   34799999999998  444 4568899999999999999988764 68999999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      | .++.++...+.++++|++|++++| .+..++           ...+..+++|+.+++++|...
T Consensus        86 N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-----------~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           86 N-KLQSLPNGVFDKLTQLKELALDTN-QLKSVP-----------DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-----------TTTTTTCTTCCEEECCSSCBC
T ss_pred             C-CccccCHHHhhCCcccCEEECcCC-cceEeC-----------HHHhcCCcccCEEEecCCCee
Confidence            9 566777666899999999999999 776433           234567899999999988754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=1.4e-13  Score=114.54  Aligned_cols=128  Identities=17%  Similarity=0.197  Sum_probs=95.5

Q ss_pred             CCCEEecCCC--cCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           16 RLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      .++...+.+.  .++.+|.. +..+++|++|++++|.  .+| .+..+++|++|++++|.++.+|..+..+++|+.|+++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~  101 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS  101 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred             chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence            3444444443  34445444 7889999999998888  666 7888899999999999888888877778889999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      +| .+..++ . +.++++|++|++++| .+..++          ....+..+++|+.+++++|.....
T Consensus       102 ~N-~l~~l~-~-~~~l~~L~~L~l~~N-~i~~~~----------~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          102 YN-QIASLS-G-IEKLVNLRVLYMSNN-KITNWG----------EIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EE-ECCCHH-H-HHHHHHSSEEEESEE-ECCCHH----------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CC-cCCcCC-c-cccCCCCCEEECCCC-cCCchh----------HHHHHhcCCCCCEEEecCCccccc
Confidence            88 555565 3 788888999999888 665322          224677788899999988876543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.23  E-value=9.1e-12  Score=123.56  Aligned_cols=113  Identities=20%  Similarity=0.221  Sum_probs=95.6

Q ss_pred             CChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCC
Q 017525           30 VNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNL  107 (370)
Q Consensus        30 ~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l  107 (370)
                      +++..+..++.|++|+|++|.  .+|..+..+++|++|+|++|.++.+|..++.+++|+.|+|++| .+..+|.. ++++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l  292 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSC  292 (727)
T ss_dssp             -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCC
Confidence            345558899999999999999  7888888999999999999999999999999999999999999 56688887 9999


Q ss_pred             CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525          108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      ++|++|++++| .++.+            +..+..+++|+.|++++|.+.
T Consensus       293 ~~L~~L~L~~N-~l~~l------------p~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          293 FQLKYFYFFDN-MVTTL------------PWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             TTCSEEECCSS-CCCCC------------CSSTTSCTTCCCEECTTSCCC
T ss_pred             CCCCEEECCCC-CCCcc------------ChhhhcCCCccEEeCCCCccC
Confidence            99999999999 77744            345788899999999998765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=7.6e-11  Score=95.68  Aligned_cols=101  Identities=19%  Similarity=0.231  Sum_probs=86.6

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCcc-cccCCcccEEeccC
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLEY   92 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~   92 (370)
                      -+.++++++.++.+|..+   .++|++|++++|.   ..|..+.++++|++|++++|+++.+|.. +..+++|+.|++++
T Consensus        14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            378999999999998762   3899999999998   4467789999999999999999988875 57899999999999


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      | .+..++...+.++++|++|++++| .+.
T Consensus        91 N-~l~~l~~~~~~~l~~L~~L~L~~N-~~~  118 (174)
T 2r9u_A           91 N-HLKSIPRGAFDNLKSLTHIYLYNN-PWD  118 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCSEEECCSS-CBC
T ss_pred             C-ccceeCHHHhccccCCCEEEeCCC-Ccc
Confidence            8 667777766899999999999999 554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=7.6e-11  Score=95.33  Aligned_cols=102  Identities=22%  Similarity=0.248  Sum_probs=86.4

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCcc-cccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPIE-FKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~   91 (370)
                      ..+.++++++.++.+|..+   .++|++|++++|.  . .|..+..+++|++|++++|+++.+|.. +..+++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3578999999999998752   3889999999998  4 467788999999999999999988875 5789999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +| .+..++...+.++++|++|++++| .+.
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~~~  115 (170)
T 3g39_A           87 DN-QLKSIPRGAFDNLKSLTHIWLLNN-PWD  115 (170)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred             CC-ccCEeCHHHhcCCCCCCEEEeCCC-CCC
Confidence            98 667777766899999999999999 554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.15  E-value=1.7e-09  Score=99.60  Aligned_cols=134  Identities=11%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-
Q 017525            3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      +.++.++..  .+ .+|+.+.+.. .++.++...|.+|++|+.++++.+.  .++.....+.+|+.+.+..+ ++.++. 
T Consensus       144 ~~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~  220 (401)
T 4fdw_A          144 EGLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQ  220 (401)
T ss_dssp             TTCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTT
T ss_pred             CCccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhh
Confidence            346666665  33 4799999986 6888888889999999999999887  66655555789999999854 776665 


Q ss_pred             ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecc
Q 017525           78 EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~  155 (370)
                      .+..+++|+.+++..+  +..++..+|.+ .+|+.+.+..  .+..+           ....+..+++|+.+.+..+.
T Consensus       221 aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~--~i~~I-----------~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          221 AFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN--GVTNI-----------ASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             TTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET--TCCEE-----------CTTTTTTCTTCCEEEEESSC
T ss_pred             HhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC--CccEE-----------ChhHhhCCCCCCEEEeCCcc
Confidence            5788999999999874  67777777888 7899999954  34432           24567788999999887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.12  E-value=3.6e-12  Score=105.91  Aligned_cols=103  Identities=23%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..+++|+.|++++|.++.++ . +..+++|++|++++|.  .+|..+..+++|++|++++|.++.+| .++.+++|+.|+
T Consensus        45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            55666777777666666665 2 5666777777776666  55555566666777777777666655 456666677777


Q ss_pred             ccCcccccccCc-ccccCCCCCcEEEcccc
Q 017525           90 LEYTYGISRIPP-KVISNLKILETLRMYEC  118 (370)
Q Consensus        90 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~  118 (370)
                      +++| .+..++. ..+..+++|++|++++|
T Consensus       122 l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N  150 (198)
T 1ds9_A          122 MSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             ESEE-ECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred             CCCC-cCCchhHHHHHhcCCCCCEEEecCC
Confidence            7666 3343332 22566666777777666

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=3e-10  Score=92.13  Aligned_cols=92  Identities=18%  Similarity=0.322  Sum_probs=81.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhh-hhccccCCEEeccCCcccccCcc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFE-ISKVVSLQHLDLSHSRIESLPIE   78 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~-~~~l~~L~~L~l~~~~l~~lp~~   78 (370)
                      +|.++.+|... .++|+.|++++|.++.+++..+.++++|++|++++|.  .+|.. +..+++|++|++++|.++.+|..
T Consensus        21 ~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~   99 (174)
T 2r9u_A           21 NIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRG   99 (174)
T ss_dssp             SSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHH
Confidence            56788888863 4899999999999999977778999999999999999  66654 58899999999999999988875


Q ss_pred             -cccCCcccEEeccCcc
Q 017525           79 -FKCLVNLKCLNLEYTY   94 (370)
Q Consensus        79 -~~~l~~L~~L~l~~~~   94 (370)
                       +..+++|+.|++++|.
T Consensus       100 ~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          100 AFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTCTTCSEEECCSSC
T ss_pred             HhccccCCCEEEeCCCC
Confidence             8899999999999993

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.09  E-value=3.7e-10  Score=91.25  Aligned_cols=93  Identities=18%  Similarity=0.266  Sum_probs=81.2

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccCc-
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLPI-   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp~-   77 (370)
                      +|.++.+|... .++|+.|++++|.|+.+++..+.++++|++|++++|.  .+|. .+..+++|++|++++|.++.+|. 
T Consensus        18 ~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~   96 (170)
T 3g39_A           18 GKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG   96 (170)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHH
Confidence            57788888753 4899999999999999977778999999999999999  5554 46899999999999999998887 


Q ss_pred             ccccCCcccEEeccCccc
Q 017525           78 EFKCLVNLKCLNLEYTYG   95 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~   95 (370)
                      .+..+++|+.|++++|..
T Consensus        97 ~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           97 AFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             TTTTCTTCCEEECCSSCB
T ss_pred             HhcCCCCCCEEEeCCCCC
Confidence            488999999999999943

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.05  E-value=7.3e-10  Score=99.54  Aligned_cols=192  Identities=14%  Similarity=0.106  Sum_probs=100.3

Q ss_pred             CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcc----cccCc-ccccCCcc
Q 017525           14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRI----ESLPI-EFKCLVNL   85 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l----~~lp~-~~~~l~~L   85 (370)
                      +++|+.+++.+ .++.++..+|.+|++|+.|+++.+.   ..+..|..+.++.++.......    ..+.. .+..+.+|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            67777777766 5666666666777777777776665   3334455555555555444211    11111 12222233


Q ss_pred             c-EEeccCccc-----------------------ccccC-cccccCCCCCcEEEccccCCCcccccccccCCcchhhhhc
Q 017525           86 K-CLNLEYTYG-----------------------ISRIP-PKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEEL  140 (370)
Q Consensus        86 ~-~L~l~~~~~-----------------------~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l  140 (370)
                      + .+.+.....                       +.... ......+++|+.+++.+| .+..++           ...+
T Consensus       179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-----------~~aF  246 (329)
T 3sb4_A          179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIP-----------DFTF  246 (329)
T ss_dssp             EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-----------TTTT
T ss_pred             ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-Ccceec-----------Hhhh
Confidence            2 222211100                       00000 000013677888888877 565433           3456


Q ss_pred             ccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCc-EEEEecCCcccceeccCCCc
Q 017525          141 LGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQ-TLQLTYNDLDEIKIDNGGEV  219 (370)
Q Consensus       141 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~  219 (370)
                      ..+++|+.+++..+                             ++..+...|..+++|+ .+++.. .++.++...+   
T Consensus       247 ~~~~~L~~l~l~~n-----------------------------i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF---  293 (329)
T 3sb4_A          247 AQKKYLLKIKLPHN-----------------------------LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAF---  293 (329)
T ss_dssp             TTCTTCCEEECCTT-----------------------------CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTT---
T ss_pred             hCCCCCCEEECCcc-----------------------------cceehHHHhhCChhccEEEEEcc-cceEEchhhh---
Confidence            66677776655532                             1111112566667777 777766 5565554433   


Q ss_pred             cccccccccccCcEEEEecccccccC--cccCCCCccEEe
Q 017525          220 KRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVE  257 (370)
Q Consensus       220 ~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~  257 (370)
                            ..+++|+.|++.+++++.++  .+..+++|+.|+
T Consensus       294 ------~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          294 ------MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             ------TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ------hCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence                  55777777777766666653  456677777764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.92  E-value=2.8e-10  Score=103.84  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=16.6

Q ss_pred             ccccCCCcEEEEecCCcccceec
Q 017525          192 LASLRHLQTLQLTYNDLDEIKID  214 (370)
Q Consensus       192 l~~l~~L~~L~l~~~~l~~~~~~  214 (370)
                      +...++|++|++++|.+++.+..
T Consensus       235 L~~~~~L~~L~Ls~N~i~~~g~~  257 (372)
T 3un9_A          235 AREHPSLELLHLYFNELSSEGRQ  257 (372)
T ss_dssp             HHHCSSCCEEECTTSSCCHHHHH
T ss_pred             HHhCCCCCEEeccCCCCCHHHHH
Confidence            44567888888888888766543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.91  E-value=2e-08  Score=92.48  Aligned_cols=109  Identities=13%  Similarity=0.191  Sum_probs=66.6

Q ss_pred             cccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccC----
Q 017525            5 IENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLP----   76 (370)
Q Consensus         5 l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp----   76 (370)
                      ++.|...  .++.+|+.+.+..+ ++.++..+|.+|.+|+.+++..+-  .-...+.++.+|+.+.+..+ +..+.    
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF  136 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF  136 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceee
Confidence            4556655  57888999988754 777888778889999999887554  33445667777776665433 11111    


Q ss_pred             -------------------cccccCCcccEEeccCcccccccCcccccCCCCCcEEEccc
Q 017525           77 -------------------IEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYE  117 (370)
Q Consensus        77 -------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~  117 (370)
                                         ..+..+.+|+.+.+..+  +..++..+|.++.+|+.+.+..
T Consensus       137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             ecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence                               12344556666666543  3344444455666666555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.90  E-value=4e-09  Score=95.39  Aligned_cols=99  Identities=17%  Similarity=0.236  Sum_probs=77.7

Q ss_pred             EEecCCC-cCCCCChHHHhcCCCCcEEEccC-CC--cch-hhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccC
Q 017525           19 TLFLSSN-IFHRVNSDFFQSMASLRVLKWSY-SN--PLL-FEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEY   92 (370)
Q Consensus        19 ~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~   92 (370)
                      .++++++ .++.+|.  +..+++|++|+|++ |.  .++ ..|.++++|++|+|++|.++.++. .++.+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577777 7888887  78888899999986 66  444 668888999999999998887665 578889999999998


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      | .+..+|...+..++ |+.|++.+| .+.
T Consensus        90 N-~l~~~~~~~~~~~~-L~~l~l~~N-~~~  116 (347)
T 2ifg_A           90 N-ALESLSWKTVQGLS-LQELVLSGN-PLH  116 (347)
T ss_dssp             S-CCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred             C-ccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence            8 56677766566666 999999888 554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.85  E-value=1e-08  Score=92.69  Aligned_cols=91  Identities=20%  Similarity=0.186  Sum_probs=70.6

Q ss_pred             ccccccCCCCCCCCCEEecCC-CcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCccc
Q 017525            4 HIENLVESPVCPRLRTLFLSS-NIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         4 ~l~~l~~~~~l~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      .++.+|....+++|+.|+|++ |.++.+++..|.++++|++|+|++|.   ..|..|.++++|++|+|++|.++.+|..+
T Consensus        20 ~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~   99 (347)
T 2ifg_A           20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT   99 (347)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred             CCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHH
Confidence            677788766777888888886 88888887668888888888888888   44556788888888888888888887754


Q ss_pred             ccCCcccEEeccCcc
Q 017525           80 KCLVNLKCLNLEYTY   94 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~   94 (370)
                      .....|+.|++.+|.
T Consensus       100 ~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A          100 VQGLSLQELVLSGNP  114 (347)
T ss_dssp             TCSCCCCEEECCSSC
T ss_pred             cccCCceEEEeeCCC
Confidence            444448888888874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.83  E-value=3.4e-10  Score=103.30  Aligned_cols=18  Identities=33%  Similarity=0.540  Sum_probs=9.1

Q ss_pred             ccCCCcEEEEecCCcccc
Q 017525          194 SLRHLQTLQLTYNDLDEI  211 (370)
Q Consensus       194 ~l~~L~~L~l~~~~l~~~  211 (370)
                      ..++|++|++++|.+++.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~  226 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDT  226 (372)
T ss_dssp             GCSCCCEEECCSSCCCHH
T ss_pred             cCCCcCeEECCCCCCCHH
Confidence            334555555555555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.79  E-value=6.3e-08  Score=89.11  Aligned_cols=264  Identities=14%  Similarity=0.122  Sum_probs=147.1

Q ss_pred             cccccccCC--CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC------------------------cchhhh
Q 017525            3 NHIENLVES--PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN------------------------PLLFEI   56 (370)
Q Consensus         3 n~l~~l~~~--~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~------------------------~~~~~~   56 (370)
                      +.++.|+..  .++++|+.+++.++ ++.++...|.+|..|+.+.+...-                        .....|
T Consensus        80 ~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF  158 (394)
T 4fs7_A           80 STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAF  158 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTT
T ss_pred             CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhh
Confidence            346666665  67899999999765 777777778888888877665331                        112446


Q ss_pred             hccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcch
Q 017525           57 SKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRV  135 (370)
Q Consensus        57 ~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  135 (370)
                      .++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+  +..++..++.++..|+.+.+..+ ... +           
T Consensus       159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~-~~~-i-----------  222 (394)
T 4fs7_A          159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS-LYY-L-----------  222 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT-CCE-E-----------
T ss_pred             cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC-ceE-e-----------
Confidence            77889999998764 344444 5778999999999875  66677667889999988877654 211 1           


Q ss_pred             hhhhcccCCCccEEEEEecchhhhH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceec
Q 017525          136 LVEELLGLEHLSVFTITLNNFHAFQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID  214 (370)
Q Consensus       136 ~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  214 (370)
                       ........+|+.+.+......-.. .+....     .+..+.+...  ........+..+..++.+......+..   .
T Consensus       223 -~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~-----~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~~---~  291 (394)
T 4fs7_A          223 -GDFALSKTGVKNIIIPDSFTELGKSVFYGCT-----DLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVPE---K  291 (394)
T ss_dssp             -CTTTTTTCCCCEEEECTTCCEECSSTTTTCS-----SCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEECT---T
T ss_pred             -ehhhcccCCCceEEECCCceecccccccccc-----cceeEEcCCC--cceeeccccccccccceeccCceeecc---c
Confidence             011122345555555422110000 000111     2333333221  112222345556666666555432211   1


Q ss_pred             cCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccc
Q 017525          215 NGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLER  292 (370)
Q Consensus       215 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~  292 (370)
                      .+         ..+.+|+.+.+..+ ++.+  .++..+.+|+.++|...  ++.+.            ...+.++.+|+.
T Consensus       292 ~F---------~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~------------~~aF~~c~~L~~  347 (394)
T 4fs7_A          292 TF---------YGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIG------------KRSFRGCTSLSN  347 (394)
T ss_dssp             TT---------TTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEEC------------TTTTTTCTTCCE
T ss_pred             cc---------cccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEh------------HHhccCCCCCCE
Confidence            11         44667777776544 3222  24556677777777532  33231            135556677777


Q ss_pred             cccccccccccccCCCc-cCCCcceEeec
Q 017525          293 LILEELKNLKTVHSKAL-PFPHLKEMSVD  320 (370)
Q Consensus       293 L~l~~~~~l~~i~~~~~-~~~~L~~L~l~  320 (370)
                      +.+..  +++.|..... .+++|+.+.+.
T Consensus       348 i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          348 INFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             ECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             EEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            76643  2555544332 35566666663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.72  E-value=3.2e-07  Score=84.35  Aligned_cols=110  Identities=11%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             cccccCC--CCCC-CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-----c-chhhhhccccCCEEeccCCccccc
Q 017525            5 IENLVES--PVCP-RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-----P-LLFEISKVVSLQHLDLSHSRIESL   75 (370)
Q Consensus         5 l~~l~~~--~~l~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-----~-~~~~~~~l~~L~~L~l~~~~l~~l   75 (370)
                      ++.|+..  .++. .|+.+.+... ++.+...+|.+|.+|+.+.+..+.     . -...|.++.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            5566665  4554 5999999764 888888889999999999987652     2 2356677888887776653 4445


Q ss_pred             Cc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           76 PI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        76 p~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +. .+..+.+|+.+.+...  +..++..++.++.+|+.+.+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence            44 4677888999888753  55566666888888888887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.65  E-value=8.5e-09  Score=82.55  Aligned_cols=86  Identities=19%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             CCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc-ccccc--CcccCC----CCccEEeeccCcchHHhhh
Q 017525          197 HLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRHA--TWLFLA----PNLKRVEIDNCQDMKEIID  269 (370)
Q Consensus       197 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~--~~l~~l----~~L~~L~L~~~~~~~~~~~  269 (370)
                      .|+.|+++++.+++.+....         ..+++|++|+|++| ++++.  ..+..+    ++|++|+|++|..+++..-
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L---------~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl  132 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM---------EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI  132 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG---------TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred             eEeEEeCcCCCccHHHHHHh---------cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence            45555555555544433222         34555555555555 44442  223322    2455555555554444321


Q ss_pred             ccccCCCcccccCCcccccccccccccccccccc
Q 017525          270 SEKFGEVPAEVMANLIPFARLERLILEELKNLKT  303 (370)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~  303 (370)
                                  ..+..+|+|+.|++++|+.+++
T Consensus       133 ------------~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          133 ------------IALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             ------------HHGGGCTTCCEEEEESCTTCCC
T ss_pred             ------------HHHhcCCCCCEEECCCCCCCCc
Confidence                        1233445555555555554444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.61  E-value=1e-08  Score=82.06  Aligned_cols=87  Identities=10%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             ccCcEEEEecccccc--cCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccc----cccccccccccccccc
Q 017525          229 HSLKNVYISRSKFRH--ATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP----FARLERLILEELKNLK  302 (370)
Q Consensus       229 ~~L~~L~l~~~~l~~--~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~L~~L~l~~~~~l~  302 (370)
                      .+|+.|++++|.+++  +..+..+++|++|+|++|..+++...            ..+..    .++|+.|+|++|..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL------------~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL------------ERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH------------HHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH------------HHHHhcccccCCCCEEEcCCCCcCC
Confidence            356666666665544  33455566666666666665555421            12222    3456666666666655


Q ss_pred             cccCC-CccCCCcceEeecCCCCCCC
Q 017525          303 TVHSK-ALPFPHLKEMSVDRCPLLKK  327 (370)
Q Consensus       303 ~i~~~-~~~~~~L~~L~l~~c~~L~~  327 (370)
                      +-... ...+++|+.|++++|++++.
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            53222 12466666666666666654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.50  E-value=7.8e-06  Score=74.57  Aligned_cols=76  Identities=11%  Similarity=0.047  Sum_probs=38.6

Q ss_pred             CCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cc-hhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           14 CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PL-LFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        14 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~-~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      ..+|+.+.+... ++.++..+|.+|.+|+.+.+..+- .+ ..+|.++ +|+.+.+.. +++.+........+|+.+.+.
T Consensus        45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp  121 (379)
T 4h09_A           45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFP  121 (379)
T ss_dssp             GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECC
T ss_pred             ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCC
Confidence            355666666543 566666667777777777775443 22 2333343 455555433 233333322222355555554


Q ss_pred             C
Q 017525           92 Y   92 (370)
Q Consensus        92 ~   92 (370)
                      .
T Consensus       122 ~  122 (379)
T 4h09_A          122 G  122 (379)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.48  E-value=2.5e-07  Score=83.72  Aligned_cols=63  Identities=13%  Similarity=0.077  Sum_probs=33.6

Q ss_pred             ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc------CcccCCCCccEEeeccCc
Q 017525          194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~L~~~~  262 (370)
                      .+|+|++|++++|.+.+.......      ....+++|++|+|+.|.+++.      ..+..+++|+.|+|++|.
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la------~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFL------ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHH------HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHH------hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            356777777776665532111110      002456777777766655442      122345667777776665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.44  E-value=6.9e-06  Score=75.39  Aligned_cols=256  Identities=12%  Similarity=0.138  Sum_probs=138.8

Q ss_pred             cccccCC--CCCCCCCEEecCCC---cCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc
Q 017525            5 IENLVES--PVCPRLRTLFLSSN---IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         5 l~~l~~~--~~l~~L~~L~l~~~---~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      ++.+...  .++++|+.+.+..+   .++.+...+|.+|.+|+.+.+..+-  .....+..+.+|+.+.+... ++.++.
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~  153 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHHCEELDTVTIPEG-VTSVAD  153 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhhhcccccccccce-eeeecc
Confidence            4555555  67899999998765   3777888888999999888876654  33345677888888888653 333333


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccC----------------Ccc------
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFG----------------DCR------  134 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~~~------  134 (370)
                       .+..+.+|+.+.+..+  +..+...+|.+ .+|+.+.+...  +..+......+                .+.      
T Consensus       154 ~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~  228 (394)
T 4gt6_A          154 GMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKS  228 (394)
T ss_dssp             TTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEEC
T ss_pred             cceecccccccccccce--eeEeccccccc-cceeEEEECCc--ccccccchhhhccccceecccccccccccceeeccc
Confidence             4556777777777653  44444443433 34555555432  11100000000                000      


Q ss_pred             ----hhhhhcccCCCccEEEEEecchhhhH-hhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcc
Q 017525          135 ----VLVEELLGLEHLSVFTITLNNFHAFQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLD  209 (370)
Q Consensus       135 ----~~~~~l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~  209 (370)
                          ...........+..+.+... ...+. ..+.  ...  .|+.+.+.+  .....+...+..++.|+.+.+. +.++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~--~c~--~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~-~~i~  300 (394)
T 4gt6_A          229 ANGDYALIRYPSQREDPAFKIPNG-VARIETHAFD--SCA--YLASVKMPD--SVVSIGTGAFMNCPALQDIEFS-SRIT  300 (394)
T ss_dssp             TTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTT--TCS--SCCEEECCT--TCCEECTTTTTTCTTCCEEECC-TTCC
T ss_pred             ccccccccccccccccceEEcCCc-ceEcccceee--ecc--cccEEeccc--ccceecCcccccccccccccCC-Cccc
Confidence                00000001111112211100 00000 0000  000  244444422  2222333467788889988886 3556


Q ss_pred             cceeccCCCccccccccccccCcEEEEeccccccc--CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccc
Q 017525          210 EIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPF  287 (370)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (370)
                      .++...+         ..+.+|+.+.|..+ ++.+  .++..+.+|+.+.|...  ++.+.            ...+.++
T Consensus       301 ~I~~~aF---------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~------------~~aF~~C  356 (394)
T 4gt6_A          301 ELPESVF---------AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIP------------ESAFSNC  356 (394)
T ss_dssp             EECTTTT---------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCC------------GGGGTTC
T ss_pred             ccCceee---------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEh------------HhHhhCC
Confidence            6654443         56888999988654 4433  35677889999998643  33332            1367788


Q ss_pred             ccccccccccc
Q 017525          288 ARLERLILEEL  298 (370)
Q Consensus       288 p~L~~L~l~~~  298 (370)
                      ++|+.+.+.+.
T Consensus       357 ~~L~~i~~~~~  367 (394)
T 4gt6_A          357 TALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEESSC
T ss_pred             CCCCEEEECCc
Confidence            99999988774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=5.1e-07  Score=73.69  Aligned_cols=115  Identities=17%  Similarity=0.101  Sum_probs=71.0

Q ss_pred             HHhcCCCCcEEEccCC-C-------cchhhhhccccCCEEeccCCccc-----ccCcccccCCcccEEeccCcccccc--
Q 017525           34 FFQSMASLRVLKWSYS-N-------PLLFEISKVVSLQHLDLSHSRIE-----SLPIEFKCLVNLKCLNLEYTYGISR--   98 (370)
Q Consensus        34 ~~~~l~~L~~L~l~~~-~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~--   98 (370)
                      ++...+.|++|++++| .       .+...+...++|++|++++|.++     .+...+...++|++|++++| .++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g  109 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG  109 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence            3556777777777777 4       23444555677778888877764     23344556677788888777 3332  


Q ss_pred             ---cCcccccCCCCCcEEEc--cccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh
Q 017525           99 ---IPPKVISNLKILETLRM--YECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA  158 (370)
Q Consensus        99 ---~~~~~~~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~  158 (370)
                         +... +...++|++|++  .+| .++...       .......+...+.|+.|+++.|.+..
T Consensus       110 ~~~l~~~-L~~n~~L~~L~L~~~~N-~i~~~g-------~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          110 ILALVEA-LQSNTSLIELRIDNQSQ-PLGNNV-------EMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHG-GGGCSSCCEEECCCCSS-CCCHHH-------HHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHH-HHhCCCceEEEecCCCC-CCCHHH-------HHHHHHHHHhCCCcCEEeccCCCCCh
Confidence               2222 566677888888  667 555211       11244556666778888887776644

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=6e-07  Score=73.23  Aligned_cols=108  Identities=11%  Similarity=0.062  Sum_probs=77.7

Q ss_pred             CCCCCCCEEecCCC-cCCCC----ChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----c
Q 017525           12 PVCPRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----S   74 (370)
Q Consensus        12 ~~l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~   74 (370)
                      ...+.|+.|++++| .++.-    -...+...++|++|++++|.       .+...+...++|++|++++|.++     .
T Consensus        33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            46788999999998 88632    11235667889999999998       23445566688999999999886     3


Q ss_pred             cCcccccCCcccEEec--cCcccccc-----cCcccccCCCCCcEEEccccCCCc
Q 017525           75 LPIEFKCLVNLKCLNL--EYTYGISR-----IPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l--~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +...+...++|++|++  ++| .++.     +.. .+...++|++|++++| .++
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n-~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFT-QQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCS-SHH
T ss_pred             HHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCC-CCC
Confidence            4556777888999999  767 4432     222 2556688999999888 554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=4.6e-06  Score=75.42  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             ccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccC-CCCccEEeeccCc
Q 017525          194 SLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFL-APNLKRVEIDNCQ  262 (370)
Q Consensus       194 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~-l~~L~~L~L~~~~  262 (370)
                      .+++|++|+++.|.+++.+...+..     ....+++|+.|++++|.+++.  ..+.. +  ...++++.+.
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~-----~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLD-----HVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHT-----THHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHh-----hcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            4678999999999888754322111     114678999999999877653  22222 2  3557777655

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.92  E-value=1.6e-05  Score=68.35  Aligned_cols=101  Identities=18%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             CCCCE--EecCCCcCCCC---ChHHHhcCCCCcEEEccCCC-----cchhhhhccccCCEEeccCCcccccCcccccCC-
Q 017525           15 PRLRT--LFLSSNIFHRV---NSDFFQSMASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLV-   83 (370)
Q Consensus        15 ~~L~~--L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~-   83 (370)
                      +.|+.  ++++.|....+   ......++++|++|+|++|.     .++..+..+++|++|+|++|.++.+. .+..+. 
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~  219 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKG  219 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTT
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhccc
Confidence            34444  55565533222   22223568899999999998     23456678999999999999887663 334444 


Q ss_pred             -cccEEeccCcccccccC------cccccCCCCCcEEEcc
Q 017525           84 -NLKCLNLEYTYGISRIP------PKVISNLKILETLRMY  116 (370)
Q Consensus        84 -~L~~L~l~~~~~~~~~~------~~~~~~l~~L~~L~l~  116 (370)
                       +|+.|++++|...+.++      ..++..+++|+.||-.
T Consensus       220 l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          220 LKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence             89999999985544343      2346788999988643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.82  E-value=1.9e-05  Score=67.82  Aligned_cols=108  Identities=20%  Similarity=0.146  Sum_probs=68.9

Q ss_pred             HhcCCCCcE--EEccCCC--cchh----hhhccccCCEEeccCCcccccC---cccccCCcccEEeccCcccccccCc-c
Q 017525           35 FQSMASLRV--LKWSYSN--PLLF----EISKVVSLQHLDLSHSRIESLP---IEFKCLVNLKCLNLEYTYGISRIPP-K  102 (370)
Q Consensus        35 ~~~l~~L~~--L~l~~~~--~~~~----~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~~~~-~  102 (370)
                      +...+.|..  ++++.+.  .++.    ...++++|+.|+|++|+++.++   ..+..+++|+.|+|++| .+..+.. .
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh
Confidence            344444554  5666665  3332    2256899999999999987554   55678999999999999 4444421 2


Q ss_pred             cccCCCCCcEEEccccCCCcc-cccccccCCcchhhhhcccCCCccEEE
Q 017525          103 VISNLKILETLRMYECAALPQ-ARDSILFGDCRVLVEELLGLEHLSVFT  150 (370)
Q Consensus       103 ~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~L~~l~  150 (370)
                      .+..+ +|++|++.+| .+.. ++     +........+..+++|+.|+
T Consensus       216 ~l~~l-~L~~L~L~~N-pl~~~~~-----~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGN-SLCDTFR-----DQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTS-CCSEEECTTS-TTGGGCS-----SHHHHHHHHHHHCTTCCEES
T ss_pred             hcccC-CcceEEccCC-cCccccC-----cchhHHHHHHHHCcccCeEC
Confidence            23444 8999999999 6642 21     00011123456677777765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.43  E-value=0.00032  Score=63.79  Aligned_cols=125  Identities=15%  Similarity=0.229  Sum_probs=81.0

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEE
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCL   88 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L   88 (370)
                      ..+.+|+.+.+..+ +..+....+.++..|+.+.+..+-  .-...+.++.+|+.+.+.. .++.++. .+..|.+|+.+
T Consensus       214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEE
T ss_pred             ccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhccccccc-cceeccccccccccccccc
Confidence            45677777777654 555666667788888888876654  3334566677788777754 3554544 46677888888


Q ss_pred             eccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525           89 NLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT  152 (370)
Q Consensus        89 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  152 (370)
                      .+.++ .+..++..+|.++.+|+.+.+..+  +..+           ...++..+++|+.+.+.
T Consensus       292 ~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I-----------~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          292 VMDNS-AIETLEPRVFMDCVKLSSVTLPTA--LKTI-----------QVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEE-----------CTTTTTTCTTCCCCCCC
T ss_pred             ccccc-ccceehhhhhcCCCCCCEEEcCcc--ccEE-----------HHHHhhCCCCCCEEEEC
Confidence            88765 566666666888888888877643  3322           23455666667666654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.28  E-value=0.0046  Score=50.17  Aligned_cols=114  Identities=11%  Similarity=0.087  Sum_probs=69.4

Q ss_pred             HhcCCCCcEEEccCC-C-------cchhhhhccccCCEEeccCCccc-----ccCcccccCCcccEEeccCcccccc---
Q 017525           35 FQSMASLRVLKWSYS-N-------PLLFEISKVVSLQHLDLSHSRIE-----SLPIEFKCLVNLKCLNLEYTYGISR---   98 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~-~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~---   98 (370)
                      ..+-+.|++|+|+++ .       .+...+..-+.|+.|+|++|.+.     .+...+..-+.|+.|+|++| .++.   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga  115 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL  115 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence            455677888888875 3       23344555677888888888775     34445566677888888887 4432   


Q ss_pred             --cCcccccCCCCCcEEEccccC--CCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           99 --IPPKVISNLKILETLRMYECA--ALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        99 --~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                        +... +..=+.|++|+++++.  .++..       ........+..-+.|+.+++..+...
T Consensus       116 ~ala~a-L~~N~tL~~L~L~n~~~~~ig~~-------g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          116 ARLLRS-TLVTQSIVEFKADNQRQSVLGNQ-------VEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHH-TTTTCCCSEEECCCCSSCCCCHH-------HHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHH-HhhCCceeEEECCCCcCcCcCHH-------HHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              1222 3444568888887551  12210       01134556666678888888776543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.19  E-value=0.0078  Score=45.43  Aligned_cols=43  Identities=14%  Similarity=0.209  Sum_probs=27.3

Q ss_pred             cccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC
Q 017525            7 NLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN   50 (370)
Q Consensus         7 ~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~   50 (370)
                      .+|.. -.++|+.|+|++|.|+.++..+|..+++|++|+|++|+
T Consensus        24 ~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           24 SLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             cCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            55542 22357777777777777766666666666666666665

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.96  E-value=0.012  Score=44.29  Aligned_cols=53  Identities=25%  Similarity=0.371  Sum_probs=43.2

Q ss_pred             CEEeccCCccc--ccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           63 QHLDLSHSRIE--SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        63 ~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      ..++.++.+++  .+|..+  -++|++|+|++| .+..++.++|..+++|+.|++.+|
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence            46788888887  888643  246899999998 778888887889999999999988

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.79  E-value=0.013  Score=47.54  Aligned_cols=79  Identities=9%  Similarity=0.021  Sum_probs=36.2

Q ss_pred             CCCCCEEecCCC-cCCCC----ChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----ccC
Q 017525           14 CPRLRTLFLSSN-IFHRV----NSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----SLP   76 (370)
Q Consensus        14 l~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~lp   76 (370)
                      -+.|+.|+|+++ .|..-    -...+..-..|+.|+|++|.       .+...+..-+.|++|+|++|.|+     .+-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345555555553 44321    11123444555555555555       22233333455555555555553     222


Q ss_pred             cccccCCcccEEeccC
Q 017525           77 IEFKCLVNLKCLNLEY   92 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~   92 (370)
                      ..+..-+.|+.|++++
T Consensus       120 ~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHTTTTCCCSEEECCC
T ss_pred             HHHhhCCceeEEECCC
Confidence            2333444455555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 16/115 (13%), Positives = 35/115 (30%), Gaps = 4/115 (3%)

Query: 3   NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSL 62
             +  L        +  L LS N    +            +     +   +  ++ +  L
Sbjct: 8   KDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRL 67

Query: 63  QHLDLSHSRIESLPI--EFKCLVNLKCLNLEYTY--GISRIPPKVISNLKILETL 113
           Q L L ++R++             L  LNL+         I  ++   L  + ++
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 5e-04
 Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 1   MTNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPL--LFEISK 58
             N +E++        L  L L  N    ++     S+  L+ L ++ +N +  +  ++ 
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFA-NNKVSDVSSLAN 349

Query: 59  VVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY 92
           + ++  L   H++I  L      L  +  L L  
Sbjct: 350 LTNINWLSAGHNQISDL-TPLANLTRITQLGLND 382

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 5/101 (4%)

Query: 40  SLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRI--ESLPIEFKCLVNLKCLNLEYTYG 95
            +   +   S     L E      +QH+DLS+S I   +L         L+ L+LE    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-R 82

Query: 96  ISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVL 136
           +S      ++    L  L +  C+   +     L   C  L
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.9 bits (89), Expect = 6e-04
 Identities = 34/232 (14%), Positives = 79/232 (34%), Gaps = 9/232 (3%)

Query: 15  PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSR 71
           P    L L +N    +    F+++ +L  L    +          + +V L+ L LS ++
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 72  IESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFG 131
           ++ LP +    +    ++      I+++   V + L  +  + +          ++  F 
Sbjct: 91  LKELPEKMPKTLQELRVHENE---ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 132 DCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFS 191
             + L    +   +++  TI      +   L            +  L   NN   LG+  
Sbjct: 148 GMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNNLAKLGLSF 204

Query: 192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH 243
            +              L E+ ++N   VK    ++    ++ VY+  +    
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 14  CPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIE 73
            P L  L +S+N    + +        L  L  S+ N L        +L+ L + ++ + 
Sbjct: 283 PPSLEELNVSNNKLIELPA----LPPRLERLIASF-NHLAEVPELPQNLKQLHVEYNPLR 337

Query: 74  SLPIEFKCLVNLK 86
             P   + + +L+
Sbjct: 338 EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 21  FLSSNIFHRVNSDFFQSMASLRVLKWSYSNPLLFEISKVVSLQHLDLSHSRIESLPIEFK 80
               N              SL  L  S  N L+   +    L+ L  S + +  +P   +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPRLERLIASFNHLAEVP---E 321

Query: 81  CLVNLKCLNLEYTYGISRIP--PKVISNLKI 109
              NLK L++EY   +   P  P+ + +L++
Sbjct: 322 LPQNLKQLHVEYNP-LREFPDIPESVEDLRM 351

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.75
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.7
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.63
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.62
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.39
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.34
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.17
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.0
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.98
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.83
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.74
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.6
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.51
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.14
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.02

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=4.4e-21  Score=174.50  Aligned_cols=263  Identities=16%  Similarity=0.200  Sum_probs=165.6

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      .++.+|++|+++++.|+.+..  +..+++|++|++++|.  .++ .++++++|++|++++|.++.++ .++.+++|+.|+
T Consensus        41 ~~l~~l~~L~l~~~~I~~l~g--l~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~-~l~~l~~L~~L~  116 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLT  116 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             HHhCCCCEEECCCCCCCCccc--cccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc-cccccccccccc
Confidence            456677777777777776642  5677777777777777  443 4777777777777777776665 366777777777


Q ss_pred             ccCcccccc--------------------------------------------------------------cCcccccCC
Q 017525           90 LEYTYGISR--------------------------------------------------------------IPPKVISNL  107 (370)
Q Consensus        90 l~~~~~~~~--------------------------------------------------------------~~~~~~~~l  107 (370)
                      ++++...+.                                                              ........+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  196 (384)
T d2omza2         117 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  196 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccc
Confidence            765422110                                                              000124566


Q ss_pred             CCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCcc
Q 017525          108 KILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSL  187 (370)
Q Consensus       108 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~  187 (370)
                      ++++.+++++| .+..+             ......++|+.+++.++....++.+....+     ++.+.+.++.-..  
T Consensus       197 ~~~~~l~l~~n-~i~~~-------------~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~-----L~~L~l~~n~l~~--  255 (384)
T d2omza2         197 TNLESLIATNN-QISDI-------------TPLGILTNLDELSLNGNQLKDIGTLASLTN-----LTDLDLANNQISN--  255 (384)
T ss_dssp             TTCSEEECCSS-CCCCC-------------GGGGGCTTCCEEECCSSCCCCCGGGGGCTT-----CSEEECCSSCCCC--
T ss_pred             cccceeeccCC-ccCCC-------------CcccccCCCCEEECCCCCCCCcchhhcccc-----cchhccccCccCC--
Confidence            78888888887 55522             224556788888888887776655544443     6667766654322  


Q ss_pred             ccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHh
Q 017525          188 GVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEI  267 (370)
Q Consensus       188 ~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~  267 (370)
                       ...+..+++|++|+++++.+..++. +          ..++.++.+.+..|+++++..+..+++++.|++++|.. +++
T Consensus       256 -~~~~~~~~~L~~L~l~~~~l~~~~~-~----------~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l-~~l  322 (384)
T d2omza2         256 -LAPLSGLTKLTELKLGANQISNISP-L----------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDI  322 (384)
T ss_dssp             -CGGGTTCTTCSEEECCSSCCCCCGG-G----------TTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCC
T ss_pred             -CCcccccccCCEeeccCcccCCCCc-c----------ccccccccccccccccccccccchhcccCeEECCCCCC-CCC
Confidence             2357778889999998887776532 1          34566666666666666665566666777777766642 222


Q ss_pred             hhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCCCCCCC
Q 017525          268 IDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPLLKKLP  329 (370)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~L~~l~  329 (370)
                      .              .+..+|+|+.|++++| .+++++ ....+++|+.|+++++ +++.++
T Consensus       323 ~--------------~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         323 S--------------PVSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             G--------------GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS-CCCBCG
T ss_pred             c--------------ccccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC-cCCCCh
Confidence            1              3456667777777666 455554 2445666777777655 455543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=5e-21  Score=168.88  Aligned_cols=230  Identities=19%  Similarity=0.219  Sum_probs=158.9

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-chhhhhccccCCEEeccCCcccccCccc
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-LLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      +.++.+|+. -.+++++|++++|.|+.+++..|.++++|++|+++++.  . .|..+.++++|++|++++|+++.+|.. 
T Consensus        20 ~~L~~lP~~-l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~-   97 (305)
T d1xkua_          20 LGLEKVPKD-LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK-   97 (305)
T ss_dssp             SCCCSCCCS-CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS-
T ss_pred             CCCCccCCC-CCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccc-
Confidence            357888875 24789999999999999998768999999999999998  4 467789999999999999999988864 


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                       ....++.|++.++ .+..++...+.....+..++...+ ......         .....+..+++|+.+++..+....+
T Consensus        98 -~~~~l~~L~~~~n-~l~~l~~~~~~~~~~~~~l~~~~n-~~~~~~---------~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          98 -MPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTN-PLKSSG---------IENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             -CCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSS-CCCGGG---------BCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             -hhhhhhhhhcccc-chhhhhhhhhhccccccccccccc-cccccC---------CCccccccccccCccccccCCcccc
Confidence             4567899999988 566666655778888888888776 332111         2344566778888888887765443


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                      +...     .. +++.+.+.+....... ...+..++.+++|++++|.++.++..++         ..+++|++|+|++|
T Consensus       166 ~~~~-----~~-~L~~L~l~~n~~~~~~-~~~~~~~~~l~~L~~s~n~l~~~~~~~~---------~~l~~L~~L~L~~N  229 (305)
T d1xkua_         166 PQGL-----PP-SLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNSISAVDNGSL---------ANTPHLRELHLNNN  229 (305)
T ss_dssp             CSSC-----CT-TCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSCCCEECTTTG---------GGSTTCCEEECCSS
T ss_pred             Cccc-----CC-ccCEEECCCCcCCCCC-hhHhhccccccccccccccccccccccc---------cccccceeeecccc
Confidence            2111     11 3555555544332221 2345566666777776666666654433         45666777777766


Q ss_pred             cccccC-cccCCCCccEEeeccCc
Q 017525          240 KFRHAT-WLFLAPNLKRVEIDNCQ  262 (370)
Q Consensus       240 ~l~~~~-~l~~l~~L~~L~L~~~~  262 (370)
                      +++.++ ++..+++|+.|+|++|+
T Consensus       230 ~L~~lp~~l~~l~~L~~L~Ls~N~  253 (305)
T d1xkua_         230 KLVKVPGGLADHKYIQVVYLHNNN  253 (305)
T ss_dssp             CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cccccccccccccCCCEEECCCCc
Confidence            666553 45566677777776664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=2.7e-20  Score=169.28  Aligned_cols=264  Identities=17%  Similarity=0.239  Sum_probs=135.8

Q ss_pred             cccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccC-----
Q 017525            3 NHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLP-----   76 (370)
Q Consensus         3 n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp-----   76 (370)
                      +.|+.+.....+++|++|++++|.|+.+++  ++++++|++|++++|. .....++.+++|+.|+++++.++.++     
T Consensus        54 ~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~l~~l~~L~~L~~~~~~~~~~~~~~~~  131 (384)
T d2omza2          54 LGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL  131 (384)
T ss_dssp             SCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTC
T ss_pred             CCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence            345555433556666666666666666554  5666666666666666 21123556666666666554332110     


Q ss_pred             -----------------------------------------------------------cccccCCcccEEeccCccccc
Q 017525           77 -----------------------------------------------------------IEFKCLVNLKCLNLEYTYGIS   97 (370)
Q Consensus        77 -----------------------------------------------------------~~~~~l~~L~~L~l~~~~~~~   97 (370)
                                                                                 .....+++++.++++++ .+.
T Consensus       132 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n-~i~  210 (384)
T d2omza2         132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNN-QIS  210 (384)
T ss_dssp             TTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCC
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCC-ccC
Confidence                                                                       01223455555555555 233


Q ss_pred             ccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEE
Q 017525           98 RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLC  177 (370)
Q Consensus        98 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~  177 (370)
                      .++.  +..+++|+.|++.+| .+..             +..+..+++|+.+++..+....+..+....+     ++.+.
T Consensus       211 ~~~~--~~~~~~L~~L~l~~n-~l~~-------------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-----L~~L~  269 (384)
T d2omza2         211 DITP--LGILTNLDELSLNGN-QLKD-------------IGTLASLTNLTDLDLANNQISNLAPLSGLTK-----LTELK  269 (384)
T ss_dssp             CCGG--GGGCTTCCEEECCSS-CCCC-------------CGGGGGCTTCSEEECCSSCCCCCGGGTTCTT-----CSEEE
T ss_pred             CCCc--ccccCCCCEEECCCC-CCCC-------------cchhhcccccchhccccCccCCCCccccccc-----CCEee
Confidence            3322  344556666666666 4432             1234455566666666665554443333322     44444


Q ss_pred             ecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEe
Q 017525          178 LSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVE  257 (370)
Q Consensus       178 l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~  257 (370)
                      +..+.-..   ...+..++.++.+.++.+.++.+.. +          ..+++++.|++++|++++++.+..+++|++|+
T Consensus       270 l~~~~l~~---~~~~~~~~~l~~l~~~~n~l~~~~~-~----------~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~  335 (384)
T d2omza2         270 LGANQISN---ISPLAGLTALTNLELNENQLEDISP-I----------SNLKNLTYLTLYFNNISDISPVSSLTKLQRLF  335 (384)
T ss_dssp             CCSSCCCC---CGGGTTCTTCSEEECCSSCCSCCGG-G----------GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEE
T ss_pred             ccCcccCC---CCccccccccccccccccccccccc-c----------chhcccCeEECCCCCCCCCcccccCCCCCEEE
Confidence            44332211   1234555566666666655554321 1          44566666666666666655556666666666


Q ss_pred             eccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecC
Q 017525          258 IDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDR  321 (370)
Q Consensus       258 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~  321 (370)
                      +++|. ++++              ..+..+|+|++|+++++ .++++++ ...+++|+.|++++
T Consensus       336 L~~n~-l~~l--------------~~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~  382 (384)
T d2omza2         336 FANNK-VSDV--------------SSLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLND  382 (384)
T ss_dssp             CCSSC-CCCC--------------GGGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCC
T ss_pred             CCCCC-CCCC--------------hhHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCC
Confidence            66664 2222              13445666666666655 4555432 33455666666554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=5.2e-20  Score=162.92  Aligned_cols=242  Identities=17%  Similarity=0.132  Sum_probs=151.5

Q ss_pred             CCCCCEEecCCCcCC---CCChHHHhcCCCCcEEEccCC-C---cchhhhhccccCCEEeccCCccccc-CcccccCCcc
Q 017525           14 CPRLRTLFLSSNIFH---RVNSDFFQSMASLRVLKWSYS-N---PLLFEISKVVSLQHLDLSHSRIESL-PIEFKCLVNL   85 (370)
Q Consensus        14 l~~L~~L~l~~~~i~---~~~~~~~~~l~~L~~L~l~~~-~---~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L   85 (370)
                      -.+++.|+|+++.+.   .+|.. ++++++|++|+++++ .   .+|..++++++|++|++++|++..+ +..+..+.+|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~-l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             cEEEEEEECCCCCCCCCCCCChH-HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhh
Confidence            346888999998776   36666 889999999999874 4   6888999999999999999988754 4457889999


Q ss_pred             cEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCc-cEEEEEecchhhhH-hhh
Q 017525           86 KCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHL-SVFTITLNNFHAFQ-RLL  163 (370)
Q Consensus        86 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L-~~l~l~~~~~~~~~-~~~  163 (370)
                      +.+++++|.....+|.. +.++++|+++++++| .+..           ..+..+..+..+ +.+.+..+...... ...
T Consensus       128 ~~l~l~~N~~~~~~p~~-l~~l~~L~~l~l~~n-~l~~-----------~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~  194 (313)
T d1ogqa_         128 VTLDFSYNALSGTLPPS-ISSLPNLVGITFDGN-RISG-----------AIPDSYGSFSKLFTSMTISRNRLTGKIPPTF  194 (313)
T ss_dssp             CEEECCSSEEESCCCGG-GGGCTTCCEEECCSS-CCEE-----------ECCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred             cccccccccccccCchh-hccCcccceeecccc-cccc-----------ccccccccccccccccccccccccccccccc
Confidence            99999998777777776 899999999999988 5541           223344455444 55666555443211 111


Q ss_pred             cCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc
Q 017525          164 GSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH  243 (370)
Q Consensus       164 ~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  243 (370)
                      ...     ....+.+......... ...+..+++++.++++++.+......+          ..+++|++|++++|++++
T Consensus       195 ~~l-----~~~~l~l~~~~~~~~~-~~~~~~~~~l~~l~~~~~~l~~~~~~~----------~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         195 ANL-----NLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             GGC-----CCSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTCCEEECCSSCCEE
T ss_pred             ccc-----cccccccccccccccc-ccccccccccccccccccccccccccc----------ccccccccccCccCeecc
Confidence            000     1222333222111111 123445566667766666554433222          345667777777766653


Q ss_pred             -c-CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccccc
Q 017525          244 -A-TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       244 -~-~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                       + .+++.+++|++|+|++|.....++              ....+.+|+.+.++++.
T Consensus       259 ~iP~~l~~L~~L~~L~Ls~N~l~g~iP--------------~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         259 TLPQGLTQLKFLHSLNVSFNNLCGEIP--------------QGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECC--------------CSTTGGGSCGGGTCSSS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccCC--------------CcccCCCCCHHHhCCCc
Confidence             3 346666777777777665432221              33455666666666554

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=150.43  Aligned_cols=195  Identities=16%  Similarity=0.165  Sum_probs=133.6

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      +...+...+.+++.++.+|+. +.  +++++|+|++|.  .+| ..+.++++|++|++++|+++.+|. ++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~L~~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSCCSSCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCCCCeeCcC-cC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            445556667777778877765 21  468888888887  444 567788888888888888877764 46788888888


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +++| .+...+.. +.++++|+.|+++++ .+..++           ...+..+.+++.+++..+....+          
T Consensus        84 Ls~N-~l~~~~~~-~~~l~~L~~L~l~~~-~~~~~~-----------~~~~~~l~~l~~L~l~~n~l~~l----------  139 (266)
T d1p9ag_          84 LSHN-QLQSLPLL-GQTLPALTVLDVSFN-RLTSLP-----------LGALRGLGELQELYLKGNELKTL----------  139 (266)
T ss_dssp             CCSS-CCSSCCCC-TTTCTTCCEEECCSS-CCCCCC-----------SSTTTTCTTCCEEECTTSCCCCC----------
T ss_pred             cccc-cccccccc-ccccccccccccccc-ccceee-----------cccccccccccccccccccccee----------
Confidence            8887 45555553 778888888888877 444221           22334455565555554432111          


Q ss_pred             ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC-ccc
Q 017525          170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT-WLF  248 (370)
Q Consensus       170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~  248 (370)
                                        ....+..+++++.+++++|.++.++...+         ..+++|++|+|++|+++.++ .+.
T Consensus       140 ------------------~~~~~~~l~~l~~l~l~~N~l~~~~~~~~---------~~l~~L~~L~Ls~N~L~~lp~~~~  192 (266)
T d1p9ag_         140 ------------------PPGLLTPTPKLEKLSLANNNLTELPAGLL---------NGLENLDTLLLQENSLYTIPKGFF  192 (266)
T ss_dssp             ------------------CTTTTTTCTTCCEEECTTSCCSCCCTTTT---------TTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ------------------ccccccccccchhcccccccccccCcccc---------ccccccceeecccCCCcccChhHC
Confidence                              01235566788888888888887765544         56788888988888888774 466


Q ss_pred             CCCCccEEeeccCc
Q 017525          249 LAPNLKRVEIDNCQ  262 (370)
Q Consensus       249 ~l~~L~~L~L~~~~  262 (370)
                      .+++|+.|+|++|+
T Consensus       193 ~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         193 GSHLLPFAFLHGNP  206 (266)
T ss_dssp             TTCCCSEEECCSCC
T ss_pred             CCCCCCEEEecCCC
Confidence            78888889888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.77  E-value=1.3e-17  Score=146.62  Aligned_cols=99  Identities=23%  Similarity=0.296  Sum_probs=65.7

Q ss_pred             CCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccccC-cccccCCcccEEecc
Q 017525           16 RLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIESLP-IEFKCLVNLKCLNLE   91 (370)
Q Consensus        16 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~   91 (370)
                      ..+.++-++..++.+|..+   -+++++|++++|.  .+|. .|.++++|++|++++|.+..++ ..+..+++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            4566677766777777652   2567777887777  5553 5677777888888777777664 356777777777777


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +| .+..+|..   ....++.|+..+| .+.
T Consensus        88 ~n-~l~~l~~~---~~~~l~~L~~~~n-~l~  113 (305)
T d1xkua_          88 KN-QLKELPEK---MPKTLQELRVHEN-EIT  113 (305)
T ss_dssp             SS-CCSBCCSS---CCTTCCEEECCSS-CCC
T ss_pred             CC-ccCcCccc---hhhhhhhhhcccc-chh
Confidence            77 45556543   2345667777666 444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=6.1e-19  Score=155.89  Aligned_cols=250  Identities=18%  Similarity=0.123  Sum_probs=177.6

Q ss_pred             CCCCcEEEccCCC-----cchhhhhccccCCEEeccC-Cccc-ccCcccccCCcccEEeccCcccccccCcccccCCCCC
Q 017525           38 MASLRVLKWSYSN-----PLLFEISKVVSLQHLDLSH-SRIE-SLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKIL  110 (370)
Q Consensus        38 l~~L~~L~l~~~~-----~~~~~~~~l~~L~~L~l~~-~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L  110 (370)
                      -.+++.|+++++.     .+|..++++++|++|++++ |.++ .+|..++++++|++|++++|+..+ .+...+..+.+|
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~-~~~~~~~~~~~L  127 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTL  127 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTC
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccc-cccccccchhhh
Confidence            3478999999987     4789999999999999997 6775 899999999999999999995444 444448999999


Q ss_pred             cEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhh-hH-hhhcCCCCCccccCcEEecCcCCCCccc
Q 017525          111 ETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHA-FQ-RLLGSCMPQYVSTPSLCLSHFNNSKSLG  188 (370)
Q Consensus       111 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~L~~l~l~~~~~~~~~~  188 (370)
                      +.+++..| .+..           ..+..+..++.++.+++..+.... ++ .+.....+    +..+.+... ......
T Consensus       128 ~~l~l~~N-~~~~-----------~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l----~~~l~~~~n-~l~~~~  190 (313)
T d1ogqa_         128 VTLDFSYN-ALSG-----------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL----FTSMTISRN-RLTGKI  190 (313)
T ss_dssp             CEEECCSS-EEES-----------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT----CCEEECCSS-EEEEEC
T ss_pred             cccccccc-cccc-----------cCchhhccCcccceeecccccccccccccccccccc----ccccccccc-cccccc
Confidence            99999998 4431           345667888999999999887642 22 22222221    233333322 111111


Q ss_pred             cccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccc-cCcccCCCCccEEeeccCcchHHh
Q 017525          189 VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRH-ATWLFLAPNLKRVEIDNCQDMKEI  267 (370)
Q Consensus       189 ~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~l~~l~~L~~L~L~~~~~~~~~  267 (370)
                      ...+..+. ...++++.+..........         ..+++++.+++.+|.++. ++.++.+++|+.|+|++|+.... 
T Consensus       191 ~~~~~~l~-~~~l~l~~~~~~~~~~~~~---------~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~-  259 (313)
T d1ogqa_         191 PPTFANLN-LAFVDLSRNMLEGDASVLF---------GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT-  259 (313)
T ss_dssp             CGGGGGCC-CSEEECCSSEEEECCGGGC---------CTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC-
T ss_pred             cccccccc-ccccccccccccccccccc---------cccccccccccccccccccccccccccccccccCccCeeccc-
Confidence            12344443 4467777755544332222         568899999999997665 46677899999999999986433 


Q ss_pred             hhccccCCCcccccCCccccccccccccccccccc-cccCCCccCCCcceEeecCCCCCCCCCC
Q 017525          268 IDSEKFGEVPAEVMANLIPFARLERLILEELKNLK-TVHSKALPFPHLKEMSVDRCPLLKKLPL  330 (370)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~-~i~~~~~~~~~L~~L~l~~c~~L~~l~~  330 (370)
                                  +|..+..+++|++|+|+++ .++ .++ ..+.+++|+.+.+.+++.+...|.
T Consensus       260 ------------iP~~l~~L~~L~~L~Ls~N-~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         260 ------------LPQGLTQLKFLHSLNVSFN-NLCGEIP-QGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             ------------CCGGGGGCTTCCEEECCSS-EEEEECC-CSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             ------------CChHHhCCCCCCEEECcCC-cccccCC-CcccCCCCCHHHhCCCccccCCCC
Confidence                        3357889999999999998 455 454 455678888888888877776554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.4e-18  Score=146.25  Aligned_cols=209  Identities=20%  Similarity=0.264  Sum_probs=114.5

Q ss_pred             CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           12 PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ..+.++..+++..+.++++..  .+.+.+|+.|++.+|.  .+ ..+.++++|++|++++|.++.++. +..+++|+.++
T Consensus        16 ~~l~~~~~~~l~~~~~~d~~~--~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~   91 (227)
T d1h6ua2          16 PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELE   91 (227)
T ss_dssp             HHHHHHHHHHTTCSSTTSEEC--HHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEE
T ss_pred             HHHHHHHHHHhCCCCcCCcCC--HHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-ccccccccccc
Confidence            344444445555555554332  3556666666766666  33 356666677777777766665542 56666666776


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +++| .++.++.  +.++++|+.+++.++ ....             ...+...+.+..+.+..+..             
T Consensus        92 ~~~n-~~~~i~~--l~~l~~L~~l~l~~~-~~~~-------------~~~~~~~~~~~~l~~~~~~~-------------  141 (227)
T d1h6ua2          92 LSGN-PLKNVSA--IAGLQSIKTLDLTST-QITD-------------VTPLAGLSNLQVLYLDLNQI-------------  141 (227)
T ss_dssp             CCSC-CCSCCGG--GTTCTTCCEEECTTS-CCCC-------------CGGGTTCTTCCEEECCSSCC-------------
T ss_pred             cccc-ccccccc--ccccccccccccccc-cccc-------------cchhccccchhhhhchhhhh-------------
Confidence            6666 3344432  566666666666655 3221             11122233333333322211             


Q ss_pred             ccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccC
Q 017525          170 YVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFL  249 (370)
Q Consensus       170 ~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~  249 (370)
                                    ...   ..+..+++|+.|++++|.+..... +          ..+++|++|++++|++++++.++.
T Consensus       142 --------------~~~---~~~~~~~~L~~L~l~~n~~~~~~~-l----------~~l~~L~~L~Ls~n~l~~l~~l~~  193 (227)
T d1h6ua2         142 --------------TNI---SPLAGLTNLQYLSIGNAQVSDLTP-L----------ANLSKLTTLKADDNKISDISPLAS  193 (227)
T ss_dssp             --------------CCC---GGGGGCTTCCEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCCCGGGGG
T ss_pred             --------------chh---hhhccccccccccccccccccchh-h----------cccccceecccCCCccCCChhhcC
Confidence                          111   134455667777776665554321 1          456677777777776666666666


Q ss_pred             CCCccEEeeccCcchHHhhhccccCCCcccccCCcccccccccccccc
Q 017525          250 APNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEE  297 (370)
Q Consensus       250 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~  297 (370)
                      +++|++|+|++|+ ++++.              .+..+++|+.|++++
T Consensus       194 l~~L~~L~Ls~N~-lt~i~--------------~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         194 LPNLIEVHLKNNQ-ISDVS--------------PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CTTCCEEECTTSC-CCBCG--------------GGTTCTTCCEEEEEE
T ss_pred             CCCCCEEECcCCc-CCCCc--------------ccccCCCCCEEEeeC
Confidence            7777777777764 33331              355667777766653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.2e-17  Score=145.46  Aligned_cols=208  Identities=18%  Similarity=0.235  Sum_probs=120.1

Q ss_pred             cccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccC-CcccccCc-cc
Q 017525            5 IENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSH-SRIESLPI-EF   79 (370)
Q Consensus         5 l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~   79 (370)
                      ++.+|.. -.+++++|+|++|.|+.+++..|.++++|++|+++++.   ..+..+..+..++.+.... +.++.++. .+
T Consensus        23 L~~iP~~-ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~  101 (284)
T d1ozna_          23 LQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF  101 (284)
T ss_dssp             CSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTT
T ss_pred             CCccCCC-CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            4455442 12455666666666666665556666666666666665   2333344555566655432 34444432 45


Q ss_pred             ccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525           80 KCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      +.+++|+.|++++| .+..++...+..+++|+.+++.+| .++.++           ...+..+++|+.++++++.+.  
T Consensus       102 ~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~-----------~~~f~~~~~L~~L~l~~N~l~--  166 (284)
T d1ozna_         102 HGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDN-ALQALP-----------DDTFRDLGNLTHLFLHGNRIS--  166 (284)
T ss_dssp             TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCC-----------TTTTTTCTTCCEEECCSSCCC--
T ss_pred             cccccCCEEecCCc-ccccccccccchhcccchhhhccc-cccccC-----------hhHhccccchhhcccccCccc--
Confidence            55666666666665 333333333555666666666666 444322           122334445555544443321  


Q ss_pred             HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecc
Q 017525          160 QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS  239 (370)
Q Consensus       160 ~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  239 (370)
                                                ......+..+++|+.+++++|.+..+....+         ..+++|++|++++|
T Consensus       167 --------------------------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f---------~~l~~L~~L~l~~N  211 (284)
T d1ozna_         167 --------------------------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAF---------RDLGRLMTLYLFAN  211 (284)
T ss_dssp             --------------------------EECTTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSS
T ss_pred             --------------------------ccchhhhccccccchhhhhhccccccChhHh---------hhhhhccccccccc
Confidence                                      1112356677888888888888877755444         56788888888888


Q ss_pred             cccccC--cccCCCCccEEeeccCcc
Q 017525          240 KFRHAT--WLFLAPNLKRVEIDNCQD  263 (370)
Q Consensus       240 ~l~~~~--~l~~l~~L~~L~L~~~~~  263 (370)
                      +++.++  .++.+++|+.|++++|+.
T Consensus       212 ~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         212 NLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ccccccccccccccccCEEEecCCCC
Confidence            777664  466788888888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.9e-17  Score=139.99  Aligned_cols=195  Identities=18%  Similarity=0.164  Sum_probs=146.5

Q ss_pred             hcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525           36 QSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET  112 (370)
Q Consensus        36 ~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  112 (370)
                      .....+.+++.+++.  .+|..+.  +++++|++++|.++.+|. .+..+++|++|++++| .++.++.  ++.+++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~--~~~l~~L~~   81 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGT   81 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCE
T ss_pred             cccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccc--ccccccccc
Confidence            445666777888877  7776664  589999999999998875 5889999999999999 6677764  678999999


Q ss_pred             EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccc
Q 017525          113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL  192 (370)
Q Consensus       113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l  192 (370)
                      |++++| .+..            ....+..+++|+.++++.+....+                            ....+
T Consensus        82 L~Ls~N-~l~~------------~~~~~~~l~~L~~L~l~~~~~~~~----------------------------~~~~~  120 (266)
T d1p9ag_          82 LDLSHN-QLQS------------LPLLGQTLPALTVLDVSFNRLTSL----------------------------PLGAL  120 (266)
T ss_dssp             EECCSS-CCSS------------CCCCTTTCTTCCEEECCSSCCCCC----------------------------CSSTT
T ss_pred             cccccc-cccc------------ccccccccccccccccccccccee----------------------------ecccc
Confidence            999999 7662            233455667777777665532211                            01245


Q ss_pred             cccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccC--cccCCCCccEEeeccCcchHHhhhc
Q 017525          193 ASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHAT--WLFLAPNLKRVEIDNCQDMKEIIDS  270 (370)
Q Consensus       193 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~l~~l~~L~~L~L~~~~~~~~~~~~  270 (370)
                      ..+++++.|++++|.+..++...+         ..+++++.+++++|+++.++  .+..+++|++|+|++|.. +.+.  
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~---------~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L-~~lp--  188 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLL---------TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIP--  188 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTT---------TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC-CCCC--
T ss_pred             ccccccccccccccccceeccccc---------cccccchhcccccccccccCccccccccccceeecccCCC-cccC--
Confidence            567789999999999888876554         56789999999999888764  367789999999999873 4342  


Q ss_pred             cccCCCcccccCCcccccccccccccccc
Q 017525          271 EKFGEVPAEVMANLIPFARLERLILEELK  299 (370)
Q Consensus       271 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~  299 (370)
                                 ..+..+++|+.|+|++++
T Consensus       189 -----------~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         189 -----------KGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             -----------TTTTTTCCCSEEECCSCC
T ss_pred             -----------hhHCCCCCCCEEEecCCC
Confidence                       345567888899888753

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=3.8e-17  Score=135.52  Aligned_cols=183  Identities=20%  Similarity=0.257  Sum_probs=128.3

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCccc
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYG   95 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   95 (370)
                      +....+....++....  ...+..|++|+++++. .....+..+++|++|++++|.++.++ .++.+++|+.|++++| .
T Consensus        26 ~i~~~l~~~~~~~~~~--~~~L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n-~  101 (210)
T d1h6ta2          26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDEN-K  101 (210)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSS-C
T ss_pred             HHHHHhCcCccCCccC--HHHhcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccc-c
Confidence            3334555555654332  2457788999999888 33446788999999999999988877 4678999999999988 5


Q ss_pred             ccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCc
Q 017525           96 ISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPS  175 (370)
Q Consensus        96 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~  175 (370)
                      +..++.  +.++++|+.|++.+| .+..             +..+..+++++.+++..+....                 
T Consensus       102 i~~l~~--l~~l~~L~~L~l~~~-~~~~-------------~~~l~~l~~l~~l~~~~n~l~~-----------------  148 (210)
T d1h6ta2         102 VKDLSS--LKDLKKLKSLSLEHN-GISD-------------INGLVHLPQLESLYLGNNKITD-----------------  148 (210)
T ss_dssp             CCCGGG--GTTCTTCCEEECTTS-CCCC-------------CGGGGGCTTCCEEECCSSCCCC-----------------
T ss_pred             cccccc--ccccccccccccccc-cccc-------------cccccccccccccccccccccc-----------------
Confidence            666663  788999999999888 4432             2234555666665555443211                 


Q ss_pred             EEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccE
Q 017525          176 LCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKR  255 (370)
Q Consensus       176 l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~  255 (370)
                                   ...+..+++|+++++++|.+++++. +          ..+++|++|++++|++++++.+..+++|+.
T Consensus       149 -------------~~~~~~l~~L~~l~l~~n~l~~i~~-l----------~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~  204 (210)
T d1h6ta2         149 -------------ITVLSRLTKLDTLSLEDNQISDIVP-L----------AGLTKLQNLYLSKNHISDLRALAGLKNLDV  204 (210)
T ss_dssp             -------------CGGGGGCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCBCGGGTTCTTCSE
T ss_pred             -------------ccccccccccccccccccccccccc-c----------cCCCCCCEEECCCCCCCCChhhcCCCCCCE
Confidence                         1134556788888888887776532 1          567888888888888888877888888888


Q ss_pred             Eeecc
Q 017525          256 VEIDN  260 (370)
Q Consensus       256 L~L~~  260 (370)
                      |+|++
T Consensus       205 L~Ls~  209 (210)
T d1h6ta2         205 LELFS  209 (210)
T ss_dssp             EEEEE
T ss_pred             EEccC
Confidence            88864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=5.6e-17  Score=133.33  Aligned_cols=183  Identities=18%  Similarity=0.277  Sum_probs=115.5

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEecc
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~   91 (370)
                      .++++....+..+.++....  ...+.++++|+++++. .-...+..+++|++|++++|.++.++. ++.+++|++|+++
T Consensus        16 ~l~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~   92 (199)
T d2omxa2          16 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMN   92 (199)
T ss_dssp             HHHHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HHHHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc-ccCCccccccccc
Confidence            44444455666666665443  3567888888888888 333467888899999999988887764 7888899999998


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      +| .+..++.  +.++++|+.|+++++ ....             ...+..+++|+.++++.+....             
T Consensus        93 ~n-~~~~~~~--l~~l~~L~~L~l~~~-~~~~-------------~~~~~~l~~L~~L~l~~n~l~~-------------  142 (199)
T d2omxa2          93 NN-QIADITP--LANLTNLTGLTLFNN-QITD-------------IDPLKNLTNLNRLELSSNTISD-------------  142 (199)
T ss_dssp             SS-CCCCCGG--GTTCTTCSEEECCSS-CCCC-------------CGGGTTCTTCSEEECCSSCCCC-------------
T ss_pred             cc-ccccccc--ccccccccccccccc-cccc-------------ccccchhhhhHHhhhhhhhhcc-------------
Confidence            88 4455543  788888999988877 4431             1123344555555444332110             


Q ss_pred             ccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCC
Q 017525          172 STPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAP  251 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~  251 (370)
                                       ++.+..+++|+.|++++|.+++++. +          ..+++|++|++++|++++++.+++++
T Consensus       143 -----------------~~~l~~~~~L~~L~l~~n~l~~l~~-l----------~~l~~L~~L~ls~N~i~~i~~l~~L~  194 (199)
T d2omxa2         143 -----------------ISALSGLTSLQQLNFSSNQVTDLKP-L----------ANLTTLERLDISSNKVSDISVLAKLT  194 (199)
T ss_dssp             -----------------CGGGTTCTTCSEEECCSSCCCCCGG-G----------TTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             -----------------cccccccccccccccccccccCCcc-c----------cCCCCCCEEECCCCCCCCCccccCCC
Confidence                             1134445566666666666655431 1          44566666666666666665566666


Q ss_pred             CccEE
Q 017525          252 NLKRV  256 (370)
Q Consensus       252 ~L~~L  256 (370)
                      +|++|
T Consensus       195 ~L~~L  199 (199)
T d2omxa2         195 NLESL  199 (199)
T ss_dssp             TCSEE
T ss_pred             CCCcC
Confidence            66654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=2.5e-17  Score=138.39  Aligned_cols=204  Identities=20%  Similarity=0.274  Sum_probs=149.4

Q ss_pred             cEEEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCC
Q 017525           42 RVLKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAA  120 (370)
Q Consensus        42 ~~L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  120 (370)
                      ..++++.++ ........+.+|++|++.+|+++.++ .+..+++|++|++++| .+..+..  +.++++|+.+++.+| .
T Consensus        22 ~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~--l~~l~~l~~l~~~~n-~   96 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-P   96 (227)
T ss_dssp             HHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC-C
T ss_pred             HHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCc-eeecccc--ccccccccccccccc-c
Confidence            334555554 22335567889999999999998885 6889999999999998 4555543  788999999999988 5


Q ss_pred             CcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcE
Q 017525          121 LPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQT  200 (370)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~  200 (370)
                      ++.             +..+..+++|+.+.++.+.                           ...   ...+...+.+..
T Consensus        97 ~~~-------------i~~l~~l~~L~~l~l~~~~---------------------------~~~---~~~~~~~~~~~~  133 (227)
T d1h6ua2          97 LKN-------------VSAIAGLQSIKTLDLTSTQ---------------------------ITD---VTPLAGLSNLQV  133 (227)
T ss_dssp             CSC-------------CGGGTTCTTCCEEECTTSC---------------------------CCC---CGGGTTCTTCCE
T ss_pred             ccc-------------ccccccccccccccccccc---------------------------ccc---cchhccccchhh
Confidence            542             2234556666665544332                           111   124555678888


Q ss_pred             EEEecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccc
Q 017525          201 LQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEV  280 (370)
Q Consensus       201 L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~  280 (370)
                      +.++.+.+.....           ....++|++|++.+|++++...+..+++|++|++++|. ++++.            
T Consensus       134 l~~~~~~~~~~~~-----------~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~-l~~l~------------  189 (227)
T d1h6ua2         134 LYLDLNQITNISP-----------LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-ISDIS------------  189 (227)
T ss_dssp             EECCSSCCCCCGG-----------GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCCG------------
T ss_pred             hhchhhhhchhhh-----------hccccccccccccccccccchhhcccccceecccCCCc-cCCCh------------
Confidence            8888876654421           15678999999999988888788999999999999986 44442            


Q ss_pred             cCCccccccccccccccccccccccCCCccCCCcceEeecC
Q 017525          281 MANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDR  321 (370)
Q Consensus       281 ~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~  321 (370)
                        .+..+|+|++|++++| .+++++. ...+++|+.|++++
T Consensus       190 --~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 --PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             --GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             --hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence              4678999999999999 6888864 56799999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.6e-18  Score=138.28  Aligned_cols=164  Identities=22%  Similarity=0.296  Sum_probs=119.8

Q ss_pred             EEccCCC-cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCc
Q 017525           44 LKWSYSN-PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        44 L~l~~~~-~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +.++.+. ..+.....+.++++|++++++++.++ .+..+++|++|++++| .+..++.  ++++++|++|++++| .+.
T Consensus        23 ~~l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~--l~~l~~L~~L~l~~n-~~~   97 (199)
T d2omxa2          23 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITP--LKNLTKLVDILMNNN-QIA   97 (199)
T ss_dssp             HHTTCSSTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCC
T ss_pred             HHhCCCCCCCccCHHHhcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccCccc--ccCCccccccccccc-ccc
Confidence            3444444 22223456889999999999999885 5889999999999999 5666654  899999999999998 554


Q ss_pred             ccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEE
Q 017525          123 QARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQ  202 (370)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~  202 (370)
                      .+             ..+..+++|+.++++.+..                           ...   ..+..+++|+.|+
T Consensus        98 ~~-------------~~l~~l~~L~~L~l~~~~~---------------------------~~~---~~~~~l~~L~~L~  134 (199)
T d2omxa2          98 DI-------------TPLANLTNLTGLTLFNNQI---------------------------TDI---DPLKNLTNLNRLE  134 (199)
T ss_dssp             CC-------------GGGTTCTTCSEEECCSSCC---------------------------CCC---GGGTTCTTCSEEE
T ss_pred             cc-------------ccccccccccccccccccc---------------------------ccc---cccchhhhhHHhh
Confidence            22             2355666666665554321                           111   2456678899999


Q ss_pred             EecCCcccceeccCCCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHh
Q 017525          203 LTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEI  267 (370)
Q Consensus       203 l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~  267 (370)
                      +++|.+..++. +          ..+++|++|++.+|++++++.++.+++|++|++++|+ ++++
T Consensus       135 l~~n~l~~~~~-l----------~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~-i~~i  187 (199)
T d2omxa2         135 LSSNTISDISA-L----------SGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK-VSDI  187 (199)
T ss_dssp             CCSSCCCCCGG-G----------TTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCCC
T ss_pred             hhhhhhccccc-c----------cccccccccccccccccCCccccCCCCCCEEECCCCC-CCCC
Confidence            99988876531 1          5678999999999988888888889999999999886 4433

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.4e-17  Score=140.27  Aligned_cols=216  Identities=18%  Similarity=0.167  Sum_probs=159.6

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cch-hhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCc
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLL-FEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYT   93 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~   93 (370)
                      ..++.+++.++.+|..+   -+.+++|++++|+  .+| ..+.++++|++|+++++.+..++. .+..+..++.+.+..+
T Consensus        14 ~~v~c~~~~L~~iP~~i---p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCC---CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            34567777888888752   2568999999998  555 468889999999999999886665 4567888899888776


Q ss_pred             ccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcccc
Q 017525           94 YGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVST  173 (370)
Q Consensus        94 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L  173 (370)
                      ..+..++...++++++|++|++.+| .+..+           ....+....+|+.+++..+.+..++             
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n-~~~~~-----------~~~~~~~~~~L~~l~l~~N~l~~i~-------------  145 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQEL-----------GPGLFRGLAALQYLYLQDNALQALP-------------  145 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTS-CCCCC-----------CTTTTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             cccccccchhhcccccCCEEecCCc-ccccc-----------cccccchhcccchhhhccccccccC-------------
Confidence            6777777666899999999999988 55422           2334555677777777765432210             


Q ss_pred             CcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--CcccCCC
Q 017525          174 PSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TWLFLAP  251 (370)
Q Consensus       174 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~l~~l~  251 (370)
                                     ...+..+++|+.|++++|.++.++...+         ..+++|+++++++|+++++  ..+..++
T Consensus       146 ---------------~~~f~~~~~L~~L~l~~N~l~~l~~~~f---------~~l~~L~~l~l~~N~l~~i~~~~f~~l~  201 (284)
T d1ozna_         146 ---------------DDTFRDLGNLTHLFLHGNRISSVPERAF---------RGLHSLDRLLLHQNRVAHVHPHAFRDLG  201 (284)
T ss_dssp             ---------------TTTTTTCTTCCEEECCSSCCCEECTTTT---------TTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             ---------------hhHhccccchhhcccccCcccccchhhh---------ccccccchhhhhhccccccChhHhhhhh
Confidence                           1245667889999999999988866554         5688999999999977765  3577889


Q ss_pred             CccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccc
Q 017525          252 NLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEEL  298 (370)
Q Consensus       252 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~  298 (370)
                      +|++|++++|.... +.            +..+..+++|+.|+++++
T Consensus       202 ~L~~L~l~~N~i~~-~~------------~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         202 RLMTLYLFANNLSA-LP------------TEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TCCEEECCSSCCSC-CC------------HHHHTTCTTCCEEECCSS
T ss_pred             hccccccccccccc-cc------------ccccccccccCEEEecCC
Confidence            99999999887533 21            135667888999988875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.69  E-value=2.1e-15  Score=134.66  Aligned_cols=272  Identities=20%  Similarity=0.116  Sum_probs=154.9

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccC
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEY   92 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~   92 (370)
                      .++++|+++++.++.+|+    ..++|++|++++|.  .+|..+   .+|+.|++++|+++.++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            367888888888888875    25678888888887  666543   4788888888887766532   24588888888


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCcccccccc-------cCCcchhhhhcccCCCccEEEEEecchhhhHhhhcC
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALPQARDSIL-------FGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGS  165 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~  165 (370)
                      | .+..+|.  ++.+++|++|++.++ .+...+....       ..........+..++.++.+.+..+.......... 
T Consensus       108 n-~l~~lp~--~~~l~~L~~L~l~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~-  182 (353)
T d1jl5a_         108 N-QLEKLPE--LQNSSFLKIIDVDNN-SLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL-  182 (353)
T ss_dssp             S-CCSSCCC--CTTCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT-
T ss_pred             c-ccccccc--hhhhccceeeccccc-cccccccccccccchhhccccccccccccccccceecccccccccccccccc-
Confidence            7 5666765  577888888888877 5443332110       00011122334455666677666655433221110 


Q ss_pred             CCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccCCC-------ccccccccccccCcEEEEec
Q 017525          166 CMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNGGE-------VKRVLEISGFHSLKNVYISR  238 (370)
Q Consensus       166 ~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~-------~~~~~~~~~~~~L~~L~l~~  238 (370)
                            ....+...... ...  ...+..++.|+.++++++....++.....-       ....-.....+.+....+..
T Consensus       183 ------~~~~l~~~~~~-~~~--~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  253 (353)
T d1jl5a_         183 ------SLESIVAGNNI-LEE--LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSE  253 (353)
T ss_dssp             ------TCCEEECCSSC-CSS--CCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             ------ccccccccccc-ccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                  11222222111 111  124556677888887776555443211000       00000001223344444433


Q ss_pred             ccccc---c--------------Cc-ccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccc
Q 017525          239 SKFRH---A--------------TW-LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKN  300 (370)
Q Consensus       239 ~~l~~---~--------------~~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~  300 (370)
                      +.+..   +              .. ...+++|++|+|++|.. +.+                -..+++|+.|++++| .
T Consensus       254 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l-~~l----------------p~~~~~L~~L~L~~N-~  315 (353)
T d1jl5a_         254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL-IEL----------------PALPPRLERLIASFN-H  315 (353)
T ss_dssp             SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCC-SCC----------------CCCCTTCCEEECCSS-C
T ss_pred             ccccccccccchhcccccccCccccccccCCCCCEEECCCCcc-Ccc----------------ccccCCCCEEECCCC-c
Confidence            31111   1              11 12367899999999863 222                124789999999888 5


Q ss_pred             cccccCCCccCCCcceEeecCCCCCCCCCCCC
Q 017525          301 LKTVHSKALPFPHLKEMSVDRCPLLKKLPLDC  332 (370)
Q Consensus       301 l~~i~~~~~~~~~L~~L~l~~c~~L~~l~~~~  332 (370)
                      +++++.   .+++|++|++++|+ ++++|...
T Consensus       316 L~~l~~---~~~~L~~L~L~~N~-L~~lp~~~  343 (353)
T d1jl5a_         316 LAEVPE---LPQNLKQLHVEYNP-LREFPDIP  343 (353)
T ss_dssp             CSCCCC---CCTTCCEEECCSSC-CSSCCCCC
T ss_pred             CCcccc---ccCCCCEEECcCCc-CCCCCccc
Confidence            777753   35689999999986 99988643

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3e-17  Score=136.11  Aligned_cols=167  Identities=21%  Similarity=0.286  Sum_probs=126.0

Q ss_pred             hccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchh
Q 017525           57 SKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVL  136 (370)
Q Consensus        57 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  136 (370)
                      ..+.+|++|++++|.++.++ .+..+++|++|++++| .+..++.  ++++++|++|++++| .+..+            
T Consensus        43 ~~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~--~~~l~~L~~L~l~~n-~i~~l------------  105 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDL------------  105 (210)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCG------------
T ss_pred             HHhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccc--cccCccccccccccc-ccccc------------
Confidence            45789999999999998876 5889999999999999 5666664  789999999999999 67532            


Q ss_pred             hhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceeccC
Q 017525          137 VEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKIDNG  216 (370)
Q Consensus       137 ~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~  216 (370)
                       ..+..+++|+.+++..+...                           .   +..+..++.++.+++++|.+.+... . 
T Consensus       106 -~~l~~l~~L~~L~l~~~~~~---------------------------~---~~~l~~l~~l~~l~~~~n~l~~~~~-~-  152 (210)
T d1h6ta2         106 -SSLKDLKKLKSLSLEHNGIS---------------------------D---INGLVHLPQLESLYLGNNKITDITV-L-  152 (210)
T ss_dssp             -GGGTTCTTCCEEECTTSCCC---------------------------C---CGGGGGCTTCCEEECCSSCCCCCGG-G-
T ss_pred             -cccccccccccccccccccc---------------------------c---ccccccccccccccccccccccccc-c-
Confidence             23555666666655543211                           1   1246677889999998888776531 1 


Q ss_pred             CCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccc
Q 017525          217 GEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILE  296 (370)
Q Consensus       217 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~  296 (370)
                               ..+++|+++++++|++++++.+..+++|++|++++|. ++++              ..+..+++|++|+|+
T Consensus       153 ---------~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~-i~~l--------------~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         153 ---------SRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH-ISDL--------------RALAGLKNLDVLELF  208 (210)
T ss_dssp             ---------GGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC-CCBC--------------GGGTTCTTCSEEEEE
T ss_pred             ---------cccccccccccccccccccccccCCCCCCEEECCCCC-CCCC--------------hhhcCCCCCCEEEcc
Confidence                     5688999999999988888778889999999999886 3433              146677888888876


Q ss_pred             c
Q 017525          297 E  297 (370)
Q Consensus       297 ~  297 (370)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.4e-17  Score=140.98  Aligned_cols=246  Identities=20%  Similarity=0.212  Sum_probs=135.2

Q ss_pred             CEEecCCCcCCCCChHHHhcC--CCCcEEEccCCC--cchhhhhccccCCEEeccCCccc--ccCcccccCCcccEEecc
Q 017525           18 RTLFLSSNIFHRVNSDFFQSM--ASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIE--SLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l--~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~   91 (370)
                      +.+|++++.+.   +..+..+  ..+..+.++...  ..........+|++|++++|.++  .++..+.++++|++|+++
T Consensus         3 ~~lDLs~~~l~---~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~   79 (284)
T d2astb2           3 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE   79 (284)
T ss_dssp             SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             CEEECCCCCCC---chHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence            46788776553   2222222  234455555444  22222334567888888888764  355556778888888888


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCcc
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYV  171 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  171 (370)
                      +|........ .++++++|++|++++|..+++          .........+++|+.|+++++                 
T Consensus        80 ~~~l~~~~~~-~l~~~~~L~~L~Ls~c~~itd----------~~l~~l~~~~~~L~~L~ls~c-----------------  131 (284)
T d2astb2          80 GLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSE----------FALQTLLSSCSRLDELNLSWC-----------------  131 (284)
T ss_dssp             TCBCCHHHHH-HHTTCTTCSEEECTTCBSCCH----------HHHHHHHHHCTTCCEEECCCC-----------------
T ss_pred             ccCCCcHHHH-HHhcCCCCcCccccccccccc----------cccchhhHHHHhccccccccc-----------------
Confidence            8743223333 367788888888887644541          112222344566666655543                 


Q ss_pred             ccCcEEecCcCCCCccccc-ccc-ccCCCcEEEEecC--CcccceeccCCCccccccccccccCcEEEEecc-cccc--c
Q 017525          172 STPSLCLSHFNNSKSLGVF-SLA-SLRHLQTLQLTYN--DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRH--A  244 (370)
Q Consensus       172 ~L~~l~l~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~--~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~  244 (370)
                                ...++.... .+. .+++|+.|++++.  .+++.......        ..+++|++|++++| .+++  +
T Consensus       132 ----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~--------~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         132 ----------FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV--------RRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             ----------TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH--------HHCTTCSEEECTTCTTCCGGGG
T ss_pred             ----------cccccccchhhhcccccccchhhhcccccccccccccccc--------cccccccccccccccCCCchhh
Confidence                      333222111 122 2356777777652  23332211111        45677888888777 5654  4


Q ss_pred             CcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccccccccccccccccccccccCCCccCCCcceEeecCCCC
Q 017525          245 TWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIPFARLERLILEELKNLKTVHSKALPFPHLKEMSVDRCPL  324 (370)
Q Consensus       245 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~~c~~  324 (370)
                      ..+..+++|++|+|++|..+++..            ...+..+|+|+.|++++|-.-..+..-...+|+|+   + +|.+
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~------------l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~  257 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPET------------LLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSH  257 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGG------------GGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCC
T ss_pred             hhhcccCcCCEEECCCCCCCChHH------------HHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCcc
Confidence            556677888888888877665432            12456778888888877721111111112355654   3 4556


Q ss_pred             CCCC
Q 017525          325 LKKL  328 (370)
Q Consensus       325 L~~l  328 (370)
                      ++.+
T Consensus       258 ls~~  261 (284)
T d2astb2         258 FTTI  261 (284)
T ss_dssp             SCCT
T ss_pred             CCCC
Confidence            6543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.62  E-value=1.9e-14  Score=128.20  Aligned_cols=271  Identities=20%  Similarity=0.155  Sum_probs=159.8

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEF   79 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~   79 (370)
                      ++.++.+|+  .+++|++|++++|.|+.+|..    ..+|+.|+++++.  .++..   .+.|++|++++|.++.+|. +
T Consensus        47 ~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~  116 (353)
T d1jl5a_          47 NLGLSSLPE--LPPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-L  116 (353)
T ss_dssp             TSCCSCCCS--CCTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-C
T ss_pred             CCCCCCCCC--CCCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhh---ccccccccccccccccccc-h
Confidence            466778885  467999999999999999853    5689999999988  44321   1469999999999999985 6


Q ss_pred             ccCCcccEEeccCcccccccCc------------------ccccCCCCCcEEEccccCCCcccccccc-------cCCcc
Q 017525           80 KCLVNLKCLNLEYTYGISRIPP------------------KVISNLKILETLRMYECAALPQARDSIL-------FGDCR  134 (370)
Q Consensus        80 ~~l~~L~~L~l~~~~~~~~~~~------------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------~~~~~  134 (370)
                      +.+++|++|+++++.. ...+.                  ..+..++.++.+++..+ ....++....       .....
T Consensus       117 ~~l~~L~~L~l~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n-~~~~~~~~~~~~~~l~~~~~~~  194 (353)
T d1jl5a_         117 QNSSFLKIIDVDNNSL-KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNIL  194 (353)
T ss_dssp             TTCTTCCEEECCSSCC-SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCC
T ss_pred             hhhccceeeccccccc-cccccccccccchhhccccccccccccccccceecccccc-cccccccccccccccccccccc
Confidence            7899999999988743 21111                  12455667777877776 3332221100       00011


Q ss_pred             hhhhhcccCCCccEEEEEecchhhhHhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccce--
Q 017525          135 VLVEELLGLEHLSVFTITLNNFHAFQRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIK--  212 (370)
Q Consensus       135 ~~~~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~--  212 (370)
                      ........++.|+.+++..+....++...  .     .+..+.+.........     ...+.+...++..+.+..+.  
T Consensus       195 ~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~-----~l~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~l~~l  262 (353)
T d1jl5a_         195 EELPELQNLPFLTTIYADNNLLKTLPDLP--P-----SLEALNVRDNYLTDLP-----ELPQSLTFLDVSENIFSGLSEL  262 (353)
T ss_dssp             SSCCCCTTCTTCCEEECCSSCCSSCCSCC--T-----TCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSEESCC
T ss_pred             ccccccccccccccccccccccccccccc--c-----cccccccccccccccc-----cccccccccccccccccccccc
Confidence            12233455677777777766544332211  1     1222222221111000     01123333333332221111  


Q ss_pred             -eccC-----CCccccccccccccCcEEEEecccccccCcccCCCCccEEeeccCcchHHhhhccccCCCcccccCCccc
Q 017525          213 -IDNG-----GEVKRVLEISGFHSLKNVYISRSKFRHATWLFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANLIP  286 (370)
Q Consensus       213 -~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (370)
                       ....     ......++ ..+++|++|++++|+++.++.  .+++|+.|++++|.. +.+.                ..
T Consensus       263 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L-~~l~----------------~~  322 (353)
T d1jl5a_         263 PPNLYYLNASSNEIRSLC-DLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHL-AEVP----------------EL  322 (353)
T ss_dssp             CTTCCEEECCSSCCSEEC-CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC-SCCC----------------CC
T ss_pred             cchhcccccccCcccccc-ccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcC-Cccc----------------cc
Confidence             0000     00000000 446899999999999888763  478999999999863 3331                13


Q ss_pred             cccccccccccccccccccCCCccCCCcceEeec
Q 017525          287 FARLERLILEELKNLKTVHSKALPFPHLKEMSVD  320 (370)
Q Consensus       287 ~p~L~~L~l~~~~~l~~i~~~~~~~~~L~~L~l~  320 (370)
                      .++|++|++++|+ ++.++..   .+.|+.|.+.
T Consensus       323 ~~~L~~L~L~~N~-L~~lp~~---~~~L~~L~~~  352 (353)
T d1jl5a_         323 PQNLKQLHVEYNP-LREFPDI---PESVEDLRMN  352 (353)
T ss_dssp             CTTCCEEECCSSC-CSSCCCC---CTTCCEEECC
T ss_pred             cCCCCEEECcCCc-CCCCCcc---ccccCeeECc
Confidence            4689999999995 8887642   3467777764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.5e-16  Score=135.82  Aligned_cols=199  Identities=17%  Similarity=0.144  Sum_probs=130.2

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC----cchhhhhccccCCEEeccCCccc-ccCcccccCCcccEEecc
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN----PLLFEISKVVSLQHLDLSHSRIE-SLPIEFKCLVNLKCLNLE   91 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~----~~~~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~   91 (370)
                      +..+.+....+...... ......|++|++++|.    .+...+.++++|++|++++|.++ ..+..++.+++|++|+++
T Consensus        25 ~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls  103 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS  103 (284)
T ss_dssp             CSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECT
T ss_pred             ceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccc
Confidence            45666666544432222 3456799999999987    34556788999999999999886 445567889999999999


Q ss_pred             CcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhccc-CCCccEEEEEecchhhhHhhhcCCCCC
Q 017525           92 YTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLG-LEHLSVFTITLNNFHAFQRLLGSCMPQ  169 (370)
Q Consensus        92 ~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~l~l~~~~~~~~~~~~~~~~~~  169 (370)
                      +|..+++... .+..++++|++|++++|..++.          ......+.. .++|+.+++.++.              
T Consensus       104 ~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~--------------  159 (284)
T d2astb2         104 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE----------KHVQVAVAHVSETITQLNLSGYR--------------  159 (284)
T ss_dssp             TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH----------HHHHHHHHHSCTTCCEEECCSCG--------------
T ss_pred             ccccccccccchhhHHHHhcccccccccccccc----------ccchhhhcccccccchhhhcccc--------------
Confidence            9866664321 2246799999999999844441          112222322 3566666655431              


Q ss_pred             ccccCcEEecCcCCCCcccccc-ccccCCCcEEEEecC-CcccceeccCCCccccccccccccCcEEEEecc-cccc--c
Q 017525          170 YVSTPSLCLSHFNNSKSLGVFS-LASLRHLQTLQLTYN-DLDEIKIDNGGEVKRVLEISGFHSLKNVYISRS-KFRH--A  244 (370)
Q Consensus       170 ~l~L~~l~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~  244 (370)
                                  ..+++.++.. ...+++|++|+++++ .+++.....+         ..+++|++|++++| .+++  +
T Consensus       160 ------------~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l---------~~~~~L~~L~L~~C~~i~~~~l  218 (284)
T d2astb2         160 ------------KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF---------FQLNYLQHLSLSRCYDIIPETL  218 (284)
T ss_dssp             ------------GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG---------GGCTTCCEEECTTCTTCCGGGG
T ss_pred             ------------cccccccccccccccccccccccccccCCCchhhhhh---------cccCcCCEEECCCCCCCChHHH
Confidence                        1122221222 235678888888773 4554433222         45788888888887 6655  3


Q ss_pred             CcccCCCCccEEeeccC
Q 017525          245 TWLFLAPNLKRVEIDNC  261 (370)
Q Consensus       245 ~~l~~l~~L~~L~L~~~  261 (370)
                      ..++.+|+|+.|++++|
T Consensus       219 ~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         219 LELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTS
T ss_pred             HHHhcCCCCCEEeeeCC
Confidence            45677899999999888

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=9.8e-15  Score=123.48  Aligned_cols=101  Identities=17%  Similarity=0.261  Sum_probs=63.1

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchh-hhhccccCCEEeccCCcccc-cCc-ccccCCcccEEeccC
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLF-EISKVVSLQHLDLSHSRIES-LPI-EFKCLVNLKCLNLEY   92 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~-~~~~l~~L~~L~l~~~~l~~-lp~-~~~~l~~L~~L~l~~   92 (370)
                      ++++.++..++.+|+.+   .+++++|+++++.  .+|. .|.++++|++|++++|.+.. ++. .+..+++++++.+..
T Consensus        11 ~~i~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCSSCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCCCcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56666666677777642   1467777777776  4443 45667777777777776643 333 455677777777665


Q ss_pred             cccccccCcccccCCCCCcEEEccccCCCc
Q 017525           93 TYGISRIPPKVISNLKILETLRMYECAALP  122 (370)
Q Consensus        93 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  122 (370)
                      +..+...+...+.++++|+++++.++ .+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~  116 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNT-GIK  116 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESC-CCC
T ss_pred             cccccccccccccccccccccccchh-hhc
Confidence            44555555555677777777777766 443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.6e-14  Score=120.81  Aligned_cols=103  Identities=17%  Similarity=0.229  Sum_probs=69.1

Q ss_pred             cEEEccCCC--cchhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           42 RVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        42 ~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      ++++.++.+  .+|..+.  +++++|++++|.++.+|. .+..+++|++|++++|.....++...+.++++++++.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            566666655  5665442  468888888888887776 46778888888888875555566655778888888877654


Q ss_pred             CCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525          119 AALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      ..+..           .....+..+++|+.+++..+...
T Consensus        89 n~l~~-----------~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          89 NNLLY-----------INPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             TTCCE-----------ECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccc-----------cccccccccccccccccchhhhc
Confidence            24432           22345667777888777766543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.4e-14  Score=104.81  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=86.1

Q ss_pred             CEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCccc
Q 017525           18 RTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYG   95 (370)
Q Consensus        18 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~   95 (370)
                      |+|++++|.++.++.  +..+++|++|++++|.  .+|..++.+++|++|++++|.++.+| .++.+++|++|++++| .
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N-~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN-R   76 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS-C
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCC-c
Confidence            689999999998875  7899999999999998  78888899999999999999999887 4889999999999998 5


Q ss_pred             ccccCc-ccccCCCCCcEEEccccCCCcc
Q 017525           96 ISRIPP-KVISNLKILETLRMYECAALPQ  123 (370)
Q Consensus        96 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~  123 (370)
                      +..++. ..+..+++|+.|++++| .+..
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N-~i~~  104 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQ  104 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTS-GGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCC-cCCc
Confidence            555542 34788999999999998 6653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=1.3e-13  Score=112.11  Aligned_cols=115  Identities=21%  Similarity=0.242  Sum_probs=84.4

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCC-CChHHHhcCCCCcEEEccCCC---cchhhhhccccCCEEeccCCcccccCc
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHR-VNSDFFQSMASLRVLKWSYSN---PLLFEISKVVSLQHLDLSHSRIESLPI   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~L~~L~l~~~~l~~lp~   77 (370)
                      +++++.+|+.. .++++.|+|++|.|+. ++...|.++++|++|+++++.   ..+..+..+++|++|++++|+++.+|+
T Consensus        17 ~~~L~~iP~~l-p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~   95 (192)
T d1w8aa_          17 GRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN   95 (192)
T ss_dssp             TSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS
T ss_pred             CCCcCccCCCC-CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCH
Confidence            45677777642 3678888888887764 555557778888888888777   445666777888888888888877765


Q ss_pred             -ccccCCcccEEeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           78 -EFKCLVNLKCLNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        78 -~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                       .+..+++|++|++++| .++.++.++|..+++|+++++++|
T Consensus        96 ~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             HHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccc
Confidence             4677888888888887 566676666778888888888777

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=7.3e-14  Score=110.11  Aligned_cols=135  Identities=15%  Similarity=0.147  Sum_probs=104.6

Q ss_pred             ccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcc-cccC
Q 017525            6 ENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIE-FKCL   82 (370)
Q Consensus         6 ~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l   82 (370)
                      ...|.-.++.++|.|++++|.|+.++.. +..+++|++|++++|.  .+ ..+..+++|++|++++|.++.++.. +..+
T Consensus         9 ~~~~~~~n~~~lr~L~L~~n~I~~i~~~-~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l   86 (162)
T d1a9na_           9 EQAAQYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL   86 (162)
T ss_dssp             HTSCEEECTTSCEEEECTTSCCCSCCCG-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred             hhhHhccCcCcCcEEECCCCCCCccCcc-ccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccc
Confidence            3444446788999999999999999753 6889999999999999  44 4688899999999999999988775 4679


Q ss_pred             CcccEEeccCcccccccCc-ccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEE
Q 017525           83 VNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTIT  152 (370)
Q Consensus        83 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~  152 (370)
                      ++|++|++++| .+..++. ..+.++++|++|++.+| .+...+        ......+..+++|+.|+..
T Consensus        87 ~~L~~L~L~~N-~i~~~~~l~~l~~l~~L~~L~l~~N-~i~~~~--------~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          87 PDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRN-PVTNKK--------HYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSS-GGGGST--------THHHHHHHHCTTCSEETTE
T ss_pred             cccccceeccc-cccccccccccccccccchhhcCCC-cccccc--------chHHHHHHHCCCcCeeCCC
Confidence            99999999999 5555543 34789999999999999 665432        0112345667788877643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=7.8e-13  Score=99.08  Aligned_cols=110  Identities=18%  Similarity=0.169  Sum_probs=91.9

Q ss_pred             CcccccccCCCCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCc--
Q 017525            2 TNHIENLVESPVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPI--   77 (370)
Q Consensus         2 ~n~l~~l~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~--   77 (370)
                      +|.|+.++...++++|+.|++++|.++.+|+. +..+++|++|++++|.  .+| .+..+++|++|++++|.++.++.  
T Consensus         7 ~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~-~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~   84 (124)
T d1dcea3           7 HKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQ   84 (124)
T ss_dssp             TSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTG
T ss_pred             CCCCCCCcccccCCCCCEEECCCCccCcchhh-hhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCch
Confidence            68899998878999999999999999999886 7899999999999999  554 68999999999999999987764  


Q ss_pred             ccccCCcccEEeccCcccc--cccCcccccCCCCCcEE
Q 017525           78 EFKCLVNLKCLNLEYTYGI--SRIPPKVISNLKILETL  113 (370)
Q Consensus        78 ~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~l~~L~~L  113 (370)
                      .++.+++|+.|++++|...  ..++...+..+++|+.+
T Consensus        85 ~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          85 PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            5789999999999998432  22334445567777665

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.39  E-value=1.7e-13  Score=111.40  Aligned_cols=125  Identities=17%  Similarity=0.195  Sum_probs=104.9

Q ss_pred             CCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--c-c-hhhhhccccCCEEeccCCcccccCc-ccccCCcccEEecc
Q 017525           17 LRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--P-L-LFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLE   91 (370)
Q Consensus        17 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~-~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~   91 (370)
                      .++++.+++.++.+|..+   -+++++|+|++|.  . . +..|.++++|++|++++|.+..++. .+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            468899999999999762   2689999999998  2 3 4567889999999999999986655 67789999999999


Q ss_pred             CcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           92 YTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      +| .+..++..+|.++++|++|++++| .+..++           ...+..+++|+.+++.++...
T Consensus        87 ~N-~l~~l~~~~F~~l~~L~~L~L~~N-~l~~i~-----------~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 EN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVM-----------PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SC-CCCEECSSSSTTCTTCCEEECCSS-CCCEEC-----------TTSSTTCTTCCEEECTTCCBC
T ss_pred             cc-cccccCHHHHhCCCcccccccCCc-cccccC-----------HHHhcCCcccccccccccccc
Confidence            99 778888777999999999999999 887543           445778899999999988654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.3e-13  Score=107.23  Aligned_cols=112  Identities=21%  Similarity=0.174  Sum_probs=92.7

Q ss_pred             HhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEeccCcccccccCcccccCCCCCcE
Q 017525           35 FQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLNLEYTYGISRIPPKVISNLKILET  112 (370)
Q Consensus        35 ~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~  112 (370)
                      +.++..+++|++++|.  .++..+..+++|++|++++|.++.++ .+..+++|++|++++| .+..++...+..+++|++
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCE
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccc-cccCCCcccccccccccc
Confidence            5678899999999999  66766678999999999999999885 5889999999999999 677777765678999999


Q ss_pred             EEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchhhh
Q 017525          113 LRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFHAF  159 (370)
Q Consensus       113 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~~~  159 (370)
                      |++.+| .+..++          ....+..+++|+.+++.+|.....
T Consensus        92 L~L~~N-~i~~~~----------~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          92 LILTNN-SLVELG----------DLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             EECCSC-CCCCGG----------GGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             ceeccc-cccccc----------cccccccccccchhhcCCCccccc
Confidence            999999 776443          245677889999999998876443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.2e-13  Score=127.40  Aligned_cols=139  Identities=19%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             cCcEEecCcCCCCccc---cccccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--Cc-
Q 017525          173 TPSLCLSHFNNSKSLG---VFSLASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--TW-  246 (370)
Q Consensus       173 L~~l~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~-  246 (370)
                      +..+.+.++.-.....   ...+...+.++.+++++|.+.+.+...++..   + ......|+.+++++|.++..  .. 
T Consensus       257 l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~---l-~~~~~~L~~l~l~~~~l~~~~~~~l  332 (460)
T d1z7xw1         257 LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET---L-LEPGCQLESLWVKSCSFTAACCSHF  332 (460)
T ss_dssp             CCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH---H-TSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhhcc---c-cccccccccccccccchhhhhhhhc
Confidence            5556655543322211   1123445677777777776654332211100   0 02345788888888865542  11 


Q ss_pred             ---ccCCCCccEEeeccCcchHHhhhccccCCCcccccCCc-ccccccccccccccccccccc-----CCCccCCCcceE
Q 017525          247 ---LFLAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVMANL-IPFARLERLILEELKNLKTVH-----SKALPFPHLKEM  317 (370)
Q Consensus       247 ---l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~l~~i~-----~~~~~~~~L~~L  317 (370)
                         +...++|++|+|++|....+... .        +...+ ...+.|++|++++| .+++..     ......++|++|
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~i~~~g~~-~--------l~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L  402 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNRLEDAGVR-E--------LCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLREL  402 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSBCHHHHHH-H--------HHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEE
T ss_pred             ccccccccchhhhheeeecccCcccc-h--------hhhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEE
Confidence               23467899999998864322110 0        11112 24567999999988 565422     112246888888


Q ss_pred             eecCCCCCC
Q 017525          318 SVDRCPLLK  326 (370)
Q Consensus       318 ~l~~c~~L~  326 (370)
                      +++++ +++
T Consensus       403 ~Ls~N-~i~  410 (460)
T d1z7xw1         403 DLSNN-CLG  410 (460)
T ss_dssp             ECCSS-SCC
T ss_pred             ECCCC-cCC
Confidence            88876 444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.7e-13  Score=111.74  Aligned_cols=128  Identities=17%  Similarity=0.210  Sum_probs=84.8

Q ss_pred             CCCCCEEecCCC--cCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCcccccCCcccEEe
Q 017525           14 CPRLRTLFLSSN--IFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKCLVNLKCLN   89 (370)
Q Consensus        14 l~~L~~L~l~~~--~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~   89 (370)
                      ...++.+++++.  .+..++.. +..+++|++|++++|.  .++ .+..+++|++|++++|.++.+|.....+++|+.|+
T Consensus        22 ~~~~~~~~l~~~~~~i~~l~~s-l~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          22 ATEAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW   99 (198)
T ss_dssp             CTTCSCEECCBCCTTCCCCHHH-HHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEE
T ss_pred             ccccceeeeecccCchhhhhhH-HhcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccc
Confidence            344555666554  34455554 6777888888887777  333 57777788888888887777776555566778888


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEEEEecchh
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFTITLNNFH  157 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~l~~~~~~  157 (370)
                      +++| .+..++.  +.++++|++|++++| .+..++          .+..+..+++|+.+++++|...
T Consensus       100 l~~N-~i~~l~~--~~~l~~L~~L~L~~N-~i~~~~----------~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         100 ISYN-QIASLSG--IEKLVNLRVLYMSNN-KITNWG----------EIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             CSEE-ECCCHHH--HHHHHHSSEEEESEE-ECCCHH----------HHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccc-ccccccc--ccccccccccccccc-hhcccc----------ccccccCCCccceeecCCCccc
Confidence            8777 4555432  667777888888777 665321          2345667777888888777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.17  E-value=4.5e-12  Score=112.59  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             ccccCCCcEEEEecCCcccceeccCCCccccccccccccCcEEEEeccccccc--C----ccc--CCCCccEEeeccCc
Q 017525          192 LASLRHLQTLQLTYNDLDEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA--T----WLF--LAPNLKRVEIDNCQ  262 (370)
Q Consensus       192 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~----~l~--~l~~L~~L~L~~~~  262 (370)
                      +..+++|+.|++++|.+++.+....+..     ...+++|++|+|++|.+++.  .    .+.  ..+.|++|++++|.
T Consensus       211 l~~~~~L~~L~Ls~N~i~~~g~~~L~~~-----l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNTFTHLGSSALAIA-----LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             GGGCTTCCEEECCSSCCHHHHHHHHHHH-----GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             hcchhhhccccccccccccccccccccc-----ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            4455667777776666544322111100     03456666777766655432  1    111  23456667776665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.09  E-value=7.4e-12  Score=101.82  Aligned_cols=110  Identities=25%  Similarity=0.278  Sum_probs=75.2

Q ss_pred             cccccCC-CCCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccCccccc
Q 017525            5 IENLVES-PVCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLPIEFKC   81 (370)
Q Consensus         5 l~~l~~~-~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~   81 (370)
                      ++.++.. ..+++|+.|++++|.|+.++.  +.++++|++|++++|.  .++.....+++|++|++++|.++.++ .+..
T Consensus        37 i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~  113 (198)
T d1m9la_          37 IEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHHHHHHTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred             hhhhhhHHhcccccceeECcccCCCCccc--ccCCccccChhhcccccccccccccccccccccccccccccccc-cccc
Confidence            3344433 567777888888777777753  6777888888887777  55555555667888888887777664 4667


Q ss_pred             CCcccEEeccCcccccccCc-ccccCCCCCcEEEcccc
Q 017525           82 LVNLKCLNLEYTYGISRIPP-KVISNLKILETLRMYEC  118 (370)
Q Consensus        82 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~  118 (370)
                      +++|+.|++++| .+..++. ..+..+++|+.|++++|
T Consensus       114 l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         114 LVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             HHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cccccccccccc-hhccccccccccCCCccceeecCCC
Confidence            777888888777 4444432 23677778888888777

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-09  Score=84.92  Aligned_cols=103  Identities=17%  Similarity=0.152  Sum_probs=77.2

Q ss_pred             CCCCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC---cc-hhhhhccccCCEEeccCCcccccCc-ccccCCcccE
Q 017525           13 VCPRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN---PL-LFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKC   87 (370)
Q Consensus        13 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~---~~-~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~   87 (370)
                      .+.....++.+++.+..+|.. +.++++|++|.+++++   .+ +..|.++++|++|++++|+++.++. .+..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            445556778887777777766 6778888888887654   33 4567788888888888888887754 5778888888


Q ss_pred             EeccCcccccccCcccccCCCCCcEEEcccc
Q 017525           88 LNLEYTYGISRIPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        88 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~  118 (370)
                      |++++| .+..++.+++..+ +|+.|++++|
T Consensus        85 L~Ls~N-~l~~l~~~~~~~~-~l~~L~L~~N  113 (156)
T d2ifga3          85 LNLSFN-ALESLSWKTVQGL-SLQELVLSGN  113 (156)
T ss_dssp             EECCSS-CCSCCCSTTTCSC-CCCEEECCSS
T ss_pred             eeccCC-CCcccChhhhccc-cccccccCCC
Confidence            888888 5677777645444 6888888888

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=5.1e-11  Score=109.29  Aligned_cols=163  Identities=17%  Similarity=0.062  Sum_probs=92.1

Q ss_pred             cccCCCccEEEEEecchhhhH------hhhcCCCCCccccCcEEecCcCCCCccccccc-----cccCCCcEEEEecCCc
Q 017525          140 LLGLEHLSVFTITLNNFHAFQ------RLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSL-----ASLRHLQTLQLTYNDL  208 (370)
Q Consensus       140 l~~l~~L~~l~l~~~~~~~~~------~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~l  208 (370)
                      ......++.++++.+......      .+....     .+..+.+.... +.+.+...+     ...+.|+.++++++.+
T Consensus       251 ~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~-----~l~~l~l~~n~-i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l  324 (460)
T d1z7xw1         251 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-----SLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCSF  324 (460)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-----TCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             ccccccccccccccccccccccccccccccccc-----ccccccccccc-ccccccchhhccccccccccccccccccch
Confidence            344578889998877653221      122222     25555554432 222222222     2335799999998877


Q ss_pred             ccceeccCCCccccccccccccCcEEEEeccccccc------Cccc-CCCCccEEeeccCcchHHhhhccccCCCccccc
Q 017525          209 DEIKIDNGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWLF-LAPNLKRVEIDNCQDMKEIIDSEKFGEVPAEVM  281 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~  281 (370)
                      .......++..     ....++|++|+|++|++++.      ..+. ..+.|+.|+|++|.....-..         .+.
T Consensus       325 ~~~~~~~l~~~-----~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~---------~l~  390 (460)
T d1z7xw1         325 TAACCSHFSSV-----LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCS---------SLA  390 (460)
T ss_dssp             BGGGHHHHHHH-----HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------HHH
T ss_pred             hhhhhhhcccc-----cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHH---------HHH
Confidence            65533222110     03456899999999977542      1233 356799999999964322111         011


Q ss_pred             CCccccccccccccccccccccccCC-----Cc-cCCCcceEeecCCC
Q 017525          282 ANLIPFARLERLILEELKNLKTVHSK-----AL-PFPHLKEMSVDRCP  323 (370)
Q Consensus       282 ~~~~~~p~L~~L~l~~~~~l~~i~~~-----~~-~~~~L~~L~l~~c~  323 (370)
                      ..+..+++|++|+|+++ .+++-...     .. ....|+.|.+.++.
T Consensus       391 ~~l~~~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         391 ATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHhcCCCCCEEECCCC-cCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence            24567789999999987 45442111     11 23368888887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9.4e-10  Score=85.44  Aligned_cols=94  Identities=18%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             CcccccccCC-CCCCCCCEEecCCC-cCCCCChHHHhcCCCCcEEEccCCC--cc-hhhhhccccCCEEeccCCcccccC
Q 017525            2 TNHIENLVES-PVCPRLRTLFLSSN-IFHRVNSDFFQSMASLRVLKWSYSN--PL-LFEISKVVSLQHLDLSHSRIESLP   76 (370)
Q Consensus         2 ~n~l~~l~~~-~~l~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~~~--~~-~~~~~~l~~L~~L~l~~~~l~~lp   76 (370)
                      ++.+.++|.. ..+++|+.|++.++ .++.++...|.++++|+.|++++|.  .+ +..|..+++|++|++++|+++.+|
T Consensus        17 ~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~   96 (156)
T d2ifga3          17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS   96 (156)
T ss_dssp             SSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC
T ss_pred             CCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccC
Confidence            3556666766 78899999999876 6999998889999999999999999  44 677899999999999999999999


Q ss_pred             cccccCCcccEEeccCccc
Q 017525           77 IEFKCLVNLKCLNLEYTYG   95 (370)
Q Consensus        77 ~~~~~l~~L~~L~l~~~~~   95 (370)
                      .......+|+.|++++|..
T Consensus        97 ~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          97 WKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             STTTCSCCCCEEECCSSCC
T ss_pred             hhhhccccccccccCCCcc
Confidence            8766667899999999843

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.83  E-value=6.2e-10  Score=98.46  Aligned_cols=215  Identities=18%  Similarity=0.154  Sum_probs=140.5

Q ss_pred             CCCCCCCEEecCCCcCCCC----Ch------HHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCcccc
Q 017525           12 PVCPRLRTLFLSSNIFHRV----NS------DFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIES   74 (370)
Q Consensus        12 ~~l~~L~~L~l~~~~i~~~----~~------~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~~   74 (370)
                      ...++|+.++++++.....    +.      ..+..+++|++|++++|.       .+...+..+++|++|++++|.++.
T Consensus        56 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~  135 (344)
T d2ca6a1          56 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  135 (344)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccc
Confidence            5789999999998754432    11      224568999999999997       244555678999999999997641


Q ss_pred             -----cCc---------ccccCCcccEEeccCccccc----ccCcccccCCCCCcEEEccccCCCcccccccccCCcchh
Q 017525           75 -----LPI---------EFKCLVNLKCLNLEYTYGIS----RIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVL  136 (370)
Q Consensus        75 -----lp~---------~~~~l~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  136 (370)
                           +..         .....+.|+.++++++....    .+.. .+...+.|+.|++++| .+....      .....
T Consensus       136 ~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~-~l~~~~~L~~L~L~~n-~i~~~g------~~~~l  207 (344)
T d2ca6a1         136 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK-TFQSHRLLHTVKMVQN-GIRPEG------IEHLL  207 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH-HHHHCTTCCEEECCSS-CCCHHH------HHHHH
T ss_pred             cccccccccccccccccccccCcccceeecccccccccccccccc-hhhhhhhhcccccccc-cccccc------cccch
Confidence                 111         12357789999999874322    1222 2567789999999999 665210      00012


Q ss_pred             hhhcccCCCccEEEEEecchhhh--HhhhcCCCCCccccCcEEecCcCCCCccccccccccCCCcEEEEecCCcccceec
Q 017525          137 VEELLGLEHLSVFTITLNNFHAF--QRLLGSCMPQYVSTPSLCLSHFNNSKSLGVFSLASLRHLQTLQLTYNDLDEIKID  214 (370)
Q Consensus       137 ~~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~L~~l~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~  214 (370)
                      ...+...++|+.|+++.|.+...  ..+.                          ..+..+++|++|++++|.+++.+..
T Consensus       208 ~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~--------------------------~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         208 LEGLAYCQELKVLDLQDNTFTHLGSSALA--------------------------IALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HTTGGGCTTCCEEECCSSCCHHHHHHHHH--------------------------HHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhcchhhhccccccccccccccccccc--------------------------ccccccccchhhhhhcCccCchhhH
Confidence            34467789999999998875432  1111                          1355567888888888887765433


Q ss_pred             cCCCccccccccccccCcEEEEeccccccc------Ccc-cCCCCccEEeeccCcc
Q 017525          215 NGGEVKRVLEISGFHSLKNVYISRSKFRHA------TWL-FLAPNLKRVEIDNCQD  263 (370)
Q Consensus       215 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------~~l-~~l~~L~~L~L~~~~~  263 (370)
                      .++..   +.....+.|++|++++|+++..      ..+ .+.++|+.|+|++|..
T Consensus       262 ~l~~~---l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         262 AVVDA---FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHH---HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHH---hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            32211   1112346788999988866542      123 2578899999998875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=4.5e-07  Score=70.33  Aligned_cols=126  Identities=18%  Similarity=0.032  Sum_probs=69.9

Q ss_pred             CCCCEEecCCCcCCCCChHHHhcCCCCcEEEccCCC--cchhhhhccccCCEEeccCCcccccC---cccccCCcccEEe
Q 017525           15 PRLRTLFLSSNIFHRVNSDFFQSMASLRVLKWSYSN--PLLFEISKVVSLQHLDLSHSRIESLP---IEFKCLVNLKCLN   89 (370)
Q Consensus        15 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~   89 (370)
                      ...+.|++++...  .+.  +..+..+..+....+.  .++.....+++|++|++++|+++.++   ..+..+++|+.|+
T Consensus        22 ~~~~~Ldls~l~~--~~~--l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          22 GSQQALDLKGLRS--DPD--LVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSSCCBCCCCCSS--CTT--TTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhhCeeecccCCC--Cch--hhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3456667665421  111  2333333333333222  33444456888888888888887554   3456788888888


Q ss_pred             ccCcccccccCcccccCCCCCcEEEccccCCCcccccccccCCcchhhhhcccCCCccEEE
Q 017525           90 LEYTYGISRIPPKVISNLKILETLRMYECAALPQARDSILFGDCRVLVEELLGLEHLSVFT  150 (370)
Q Consensus        90 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~l~  150 (370)
                      +++| .++.++.-...+..+|+.|++.+| .+.....    +........+..+++|+.||
T Consensus        98 Ls~N-~i~~l~~l~~l~~~~L~~L~L~~N-pl~~~~~----~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGN-ELKSERELDKIKGLKLEELWLDGN-SLSDTFR----DQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTS-CCCCGGGHHHHTTCCCSSCCCTTS-TTSSSSS----SHHHHHHHHHTTSTTCCEET
T ss_pred             cccC-ccccchhhhhhhccccceeecCCC-CcCcCcc----cchhHHHHHHHHCCCCCEEC
Confidence            8888 556555422334556888888888 5542110    00001123345567777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=8.9e-06  Score=62.72  Aligned_cols=82  Identities=17%  Similarity=0.072  Sum_probs=61.5

Q ss_pred             HHHhcCCCCcEEEccCCC--c---chhhhhccccCCEEeccCCcccccCc-ccccCCcccEEeccCcccccccC------
Q 017525           33 DFFQSMASLRVLKWSYSN--P---LLFEISKVVSLQHLDLSHSRIESLPI-EFKCLVNLKCLNLEYTYGISRIP------  100 (370)
Q Consensus        33 ~~~~~l~~L~~L~l~~~~--~---~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~~~~------  100 (370)
                      .++..+++|++|++++|.  .   ++..+..+++|++|++++|.++.++. ......+|+.+++++|.......      
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            345679999999999998  2   34556789999999999999988776 23345679999999984433221      


Q ss_pred             cccccCCCCCcEEE
Q 017525          101 PKVISNLKILETLR  114 (370)
Q Consensus       101 ~~~~~~l~~L~~L~  114 (370)
                      ..++..+|+|+.||
T Consensus       139 ~~i~~~~P~L~~LD  152 (162)
T d1koha1         139 SAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHTTSTTCCEET
T ss_pred             HHHHHHCCCCCEEC
Confidence            13467889999986

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.60  E-value=4.9e-05  Score=58.71  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=26.6

Q ss_pred             hccccCCEEeccCCccc-----ccCcccccCCcccEEeccCcccccc-----cCcccccCCCCCcEEEcccc
Q 017525           57 SKVVSLQHLDLSHSRIE-----SLPIEFKCLVNLKCLNLEYTYGISR-----IPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        57 ~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~  118 (370)
                      ...++|++|++++|.++     .+...+...+.|++|++++|. ++.     +.. ++..-++|++|++.+|
T Consensus        41 ~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l~~-aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          41 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARLLR-STLVTQSIVEFKADNQ  110 (167)
T ss_dssp             TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHHHH-HTTTTCCCSEEECCCC
T ss_pred             hhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHHHH-HHHhCCcCCEEECCCC
Confidence            33444555555555443     122233344555555555552 221     111 1344455556655554

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.51  E-value=3.7e-05  Score=59.38  Aligned_cols=106  Identities=9%  Similarity=0.014  Sum_probs=72.2

Q ss_pred             CCCCCCCEEecCCC-cCCC--CC--hHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----c
Q 017525           12 PVCPRLRTLFLSSN-IFHR--VN--SDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----S   74 (370)
Q Consensus        12 ~~l~~L~~L~l~~~-~i~~--~~--~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~   74 (370)
                      .+.+.|+.|+|+++ .++.  +.  ...+...++|++|++++|.       .+...+...+.|++|++++|.++     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            46789999999875 4652  11  1235677889999999997       33345566788999999999886     2


Q ss_pred             cCcccccCCcccEEeccCcccccccC-------cccccCCCCCcEEEcccc
Q 017525           75 LPIEFKCLVNLKCLNLEYTYGISRIP-------PKVISNLKILETLRMYEC  118 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~~~l~~L~~L~l~~~  118 (370)
                      +-..+...+.|++|++++++ ...+.       ..++..-++|+.|+++.+
T Consensus        92 l~~aL~~n~sL~~L~l~~n~-~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR-QSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS-SCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCCc-CCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            33457778899999998873 22221       112445567777777654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.14  E-value=0.00023  Score=54.61  Aligned_cols=20  Identities=15%  Similarity=0.115  Sum_probs=10.8

Q ss_pred             hhhhcccCCCccEEEEEecc
Q 017525          136 LVEELLGLEHLSVFTITLNN  155 (370)
Q Consensus       136 ~~~~l~~l~~L~~l~l~~~~  155 (370)
                      ....+...++|+.|++..+.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            33445555666666665544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.02  E-value=0.00023  Score=54.69  Aligned_cols=106  Identities=11%  Similarity=0.084  Sum_probs=71.0

Q ss_pred             CCCCCCCEEecCCC-cCCC--C--ChHHHhcCCCCcEEEccCCC-------cchhhhhccccCCEEeccCCccc-----c
Q 017525           12 PVCPRLRTLFLSSN-IFHR--V--NSDFFQSMASLRVLKWSYSN-------PLLFEISKVVSLQHLDLSHSRIE-----S   74 (370)
Q Consensus        12 ~~l~~L~~L~l~~~-~i~~--~--~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~L~~L~l~~~~l~-----~   74 (370)
                      .+.+.|+.|+++++ .++.  +  -...+..+++|++|++++|.       .+...+...+.++.+++++|.++     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            56789999999874 5652  1  11224578889999999987       33445566788999999988764     3


Q ss_pred             cCcccccCCcccEEeccCcc-cccc-----cCcccccCCCCCcEEEcccc
Q 017525           75 LPIEFKCLVNLKCLNLEYTY-GISR-----IPPKVISNLKILETLRMYEC  118 (370)
Q Consensus        75 lp~~~~~l~~L~~L~l~~~~-~~~~-----~~~~~~~~l~~L~~L~l~~~  118 (370)
                      +...+...++|+.+++..+. .++.     +.. ++...++|+.|++..+
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~-~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN-MLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH-HHHHCSSCCEEECCCS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHH-HHHhCCCcCEEeCcCC
Confidence            44466778888877765331 2322     222 2567788999988765