Citrus Sinensis ID: 017527
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 370 | 2.2.26 [Sep-21-2011] | |||||||
| Q54PM7 | 319 | N-acetyl-D-glucosamine ki | yes | no | 0.770 | 0.893 | 0.358 | 5e-49 | |
| Q3SZM9 | 344 | N-acetyl-D-glucosamine ki | yes | no | 0.716 | 0.770 | 0.276 | 2e-12 | |
| Q9UJ70 | 344 | N-acetyl-D-glucosamine ki | yes | no | 0.675 | 0.726 | 0.275 | 2e-12 | |
| P81799 | 343 | N-acetyl-D-glucosamine ki | yes | no | 0.716 | 0.772 | 0.258 | 3e-11 | |
| Q9QZ08 | 343 | N-acetyl-D-glucosamine ki | yes | no | 0.716 | 0.772 | 0.262 | 5e-11 |
| >sp|Q54PM7|NAGK_DICDI N-acetyl-D-glucosamine kinase OS=Dictyostelium discoideum GN=nagk PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 172/310 (55%), Gaps = 25/310 (8%)
Query: 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE-- 78
+E+ +G+DGG T T + + LAR + CSN++SVGED A+ I
Sbjct: 3 KEIFIGIDGGGTKTSTVAVDSNGQE---------LARHTSPCSNYHSVGEDLAKAAINEG 53
Query: 79 -----KVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
+ + + + + V ++CL +SGV+ D+ + +W+ ++ ++ +HND
Sbjct: 54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113
Query: 134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALT 193
A+ AL+SGT GKL G V+I GTG I+ GF +G R+ G GP+LGD+GSGY I L
Sbjct: 114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173
Query: 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEA 250
V++A D GP T LT +L L+L+ ++LI W Y DP SW + A L P+ A+
Sbjct: 174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQKFAQLSPLAFEQAQL 232
Query: 251 GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310
GDE++N IL D+ L + +V+++L L D + FPLV GG +E R+ + +
Sbjct: 233 GDEISNLILVDAANALYDLINSVIKKLGL---DKEEKFPLVYTGGNIE--RKGILSDLLS 287
Query: 311 KCILRDYPGA 320
K I+ +YP A
Sbjct: 288 KKIMENYPNA 297
|
Converts N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, into GlcNAc 6-phosphate. Also has ManNAc kinase activity. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 5EC: 9 |
| >sp|Q3SZM9|NAGK_BOVIN N-acetyl-D-glucosamine kinase OS=Bos taurus GN=NAGK PE=2 SV=1 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 127/286 (44%), Gaps = 21/286 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R + L++SG + + ++ LRD FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRGLGLSLSGGDQEDAVRMLMEELRDRFPYLSESYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGP 204
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D P
Sbjct: 120 -GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 205 DTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
+ PD L + Y D +R A V A+ GD ++ I + +
Sbjct: 179 HDIGYVKQAMFNYFQVPDRLGILTHLYRDFDKSRFAGFCRKVAEGAQQGDPLSRCIFRKA 238
Query: 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E L V AV+ + G+ P++ VG V ++ W++ +E
Sbjct: 239 GEMLGRHVVAVLPEIDPVLFQGEMGLPILCVGSVWKS---WELLKE 281
|
Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q9UJ70|NAGK_HUMAN N-acetyl-D-glucosamine kinase OS=Homo sapiens GN=NAGK PE=1 SV=4 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/261 (27%), Positives = 119/261 (45%), Gaps = 11/261 (4%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+ DG ++
Sbjct: 86 ILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 AGAGPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IGW 227
G G ++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 287
Y D R A + A+ GD ++ I + + E L + AV+ + GK
Sbjct: 204 LYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIG 263
Query: 288 FPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 264 LPILCVGSVWKS---WELLKE 281
|
Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|P81799|NAGK_RAT N-acetyl-D-glucosamine kinase OS=Rattus norvegicus GN=Nagk PE=1 SV=4 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 128/286 (44%), Gaps = 21/286 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LRD FP + ++ DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLMEELRDRFPYLSESYFITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
++ + PD L + Y D ++ A + A+ GD ++ I + +
Sbjct: 179 HDIGHVKQAMFNYFQVPDRLGILTHLYRDFDKSKFAGFCQKIAEGAQQGDPLSRFIFRKA 238
Query: 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E L V AV+ + G+ P++ VG V ++ W++ +E
Sbjct: 239 GEMLGRHVVAVLPEIDPVLFQGELGLPILCVGSVWKS---WELLKE 281
|
Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity. May also play a role in sialic acid biosynthesis. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 5 EC: 9 |
| >sp|Q9QZ08|NAGK_MOUSE N-acetyl-D-glucosamine kinase OS=Mus musculus GN=Nagk PE=2 SV=3 | Back alignment and function description |
|---|
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 125/286 (43%), Gaps = 21/286 (7%)
Query: 29 GGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKS 88
GGT S V + L + +LA A +NH +G D E I +++ A K+
Sbjct: 11 GGTRSKVLL----------LSEDGQILAEADGLSTNHWLIGTDQCVERINEMVDRAKQKA 60
Query: 89 GSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY-VHNDALAALASGTMGKL 146
G + +R++ L++SG + ++ LR FP Y + DA ++A+ T
Sbjct: 61 GVDPLVPLRSLGLSLSGGEQEDAVRLLIEELRHRFPNLSENYLITTDAAGSIATATPDG- 119
Query: 147 HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT 206
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 120 -GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAP 178
Query: 207 MLTSNILSTL--ELSSPDEL--IGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDS 262
++ + PD L + Y D + A + A GD ++ I + +
Sbjct: 179 HDIGHVKQAMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKA 238
Query: 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGRE 308
E L V AV+ + G+ P++ VG V ++ W++ +E
Sbjct: 239 GEMLGRHVVAVLPEIDPVLFQGELGLPILCVGSVWKS---WELLKE 281
|
Converts endogenous N-acetylglucosamine (GlcNAc), a major component of complex carbohydrates, from lysosomal degradation or nutritional sources into GlcNAc 6-phosphate. Also has ManNAc kinase activity. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: . EC: 5 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 370 | ||||||
| 255561146 | 328 | N-acetylglucosamine kinase, putative [Ri | 0.883 | 0.996 | 0.862 | 1e-160 | |
| 224131396 | 354 | predicted protein [Populus trichocarpa] | 0.881 | 0.920 | 0.831 | 1e-155 | |
| 359485331 | 350 | PREDICTED: N-acetyl-D-glucosamine kinase | 0.883 | 0.934 | 0.827 | 1e-153 | |
| 356501411 | 370 | PREDICTED: N-acetyl-D-glucosamine kinase | 0.883 | 0.883 | 0.791 | 1e-146 | |
| 255648369 | 370 | unknown [Glycine max] | 0.883 | 0.883 | 0.782 | 1e-144 | |
| 357494027 | 355 | N-acetyl-D-glucosamine kinase [Medicago | 0.883 | 0.921 | 0.778 | 1e-142 | |
| 357494031 | 367 | N-acetyl-D-glucosamine kinase [Medicago | 0.883 | 0.891 | 0.778 | 1e-142 | |
| 356554098 | 369 | PREDICTED: LOW QUALITY PROTEIN: N-acetyl | 0.883 | 0.886 | 0.772 | 1e-139 | |
| 449463605 | 350 | PREDICTED: LOW QUALITY PROTEIN: N-acetyl | 0.872 | 0.922 | 0.764 | 1e-138 | |
| 449460020 | 355 | PREDICTED: N-acetyl-D-glucosamine kinase | 0.910 | 0.949 | 0.710 | 1e-136 |
| >gi|255561146|ref|XP_002521585.1| N-acetylglucosamine kinase, putative [Ricinus communis] gi|223539263|gb|EEF40856.1| N-acetylglucosamine kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 283/328 (86%), Positives = 299/328 (91%), Gaps = 1/328 (0%)
Query: 1 MKRYRNGEIWDFE-TAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA 59
MKRYRNGEIWDFE SG VILGLDGGTTSTVCICMP++ S LPDPLPVLARA
Sbjct: 1 MKRYRNGEIWDFEHEIPVSGNNPVILGLDGGTTSTVCICMPILPFSTPLPDPLPVLARAV 60
Query: 60 AGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLR 119
AGCSNHNSVGE AARET+E+VMADALLKSGSNRSAV+AVCLAVSGVNHP D QRILNWLR
Sbjct: 61 AGCSNHNSVGETAARETLEEVMADALLKSGSNRSAVQAVCLAVSGVNHPNDVQRILNWLR 120
Query: 120 DIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179
DIFP +V+LYV NDA+AALASGTMGKLHGCVLIAGTGTIAYGFTEDG++ARAAGAGPILG
Sbjct: 121 DIFPNHVKLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGKEARAAGAGPILG 180
Query: 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA 239
DWGSGYGIAAQALTAV+RAYDGRGP T+LTS+IL TL LSSPDELIGWTY DPSWARIAA
Sbjct: 181 DWGSGYGIAAQALTAVVRAYDGRGPQTILTSSILQTLGLSSPDELIGWTYADPSWARIAA 240
Query: 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEA 299
LVPVVVSCAEAGDEVANKILQ SVEELALSVKAVVQRL L GEDG SFPLVMVGGVLEA
Sbjct: 241 LVPVVVSCAEAGDEVANKILQVSVEELALSVKAVVQRLGLCGEDGNSSFPLVMVGGVLEA 300
Query: 300 NRRWDIGREVVKCILRDYPGAVPIRPKV 327
N+RWDIG+EVV CI RDYPGA+PIRPKV
Sbjct: 301 NKRWDIGKEVVNCIYRDYPGALPIRPKV 328
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131396|ref|XP_002321074.1| predicted protein [Populus trichocarpa] gi|222861847|gb|EEE99389.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 272/327 (83%), Positives = 295/327 (90%), Gaps = 1/327 (0%)
Query: 2 KRYRNGEIWDFE-TAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60
KRYRNGEIWDFE E G REVILGLDGGTTSTVCICMP+ SD PDPLPVLARA A
Sbjct: 3 KRYRNGEIWDFEHEIGELGNREVILGLDGGTTSTVCICMPIFPFSDPFPDPLPVLARAVA 62
Query: 61 GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRD 120
GCSNHNSVGE AARET+E+VMADALLKSGSNRSAVRAVCL+VSGVNH TD+ R+LNWLR+
Sbjct: 63 GCSNHNSVGETAARETLEQVMADALLKSGSNRSAVRAVCLSVSGVNHSTDELRVLNWLRE 122
Query: 121 IFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180
IFP +V+LYV NDA+AAL+SGTMGKLHGCVLIAGTGTIA+GFTEDGR ARAAGAGP+LGD
Sbjct: 123 IFPTHVKLYVQNDAVAALSSGTMGKLHGCVLIAGTGTIAFGFTEDGRQARAAGAGPVLGD 182
Query: 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240
WGSGYGIAAQALTA++RAYDGRGP T+L+SNIL TL LSSPDELIGWTY DPSWARIAAL
Sbjct: 183 WGSGYGIAAQALTAIVRAYDGRGPVTILSSNILQTLGLSSPDELIGWTYADPSWARIAAL 242
Query: 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300
VPVVVSCAEAGD VA++ILQDSVEELALSVKAVVQRL L GEDGK SFPLVMVGGVLEAN
Sbjct: 243 VPVVVSCAEAGDRVAHEILQDSVEELALSVKAVVQRLGLCGEDGKASFPLVMVGGVLEAN 302
Query: 301 RRWDIGREVVKCILRDYPGAVPIRPKV 327
+RWDIG+EVV I + YPG +PI PKV
Sbjct: 303 KRWDIGKEVVNHISKSYPGVLPIHPKV 329
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485331|ref|XP_002278295.2| PREDICTED: N-acetyl-D-glucosamine kinase-like [Vitis vinifera] gi|302143498|emb|CBI22059.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/330 (82%), Positives = 294/330 (89%), Gaps = 3/330 (0%)
Query: 1 MKRYRNGEIWDFETAE--ESGGREVILGLDGGTTSTVCICMPVISMSD-SLPDPLPVLAR 57
MKRYRNGEIWDFE G EV+LGLDGGTTSTVC+CMP +SD LPDP+PVLAR
Sbjct: 1 MKRYRNGEIWDFEDEMPVSPDGSEVVLGLDGGTTSTVCVCMPFFPLSDRPLPDPVPVLAR 60
Query: 58 AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
A AGCSNHNSVGE AARET+E+VMADAL KSGSNRSAVRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 61 AVAGCSNHNSVGETAARETLEQVMADALSKSGSNRSAVRAVCLAVSGVNHPTDQQRILSW 120
Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
LRDIF +V+LYV NDA+AALASGTMG+LHGCVLIAGTGTIAYGFTEDGR+ARAAGAGPI
Sbjct: 121 LRDIFSSHVKLYVQNDAVAALASGTMGELHGCVLIAGTGTIAYGFTEDGREARAAGAGPI 180
Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
LGDWGSGYGIAAQALTAV+RA+DGRGP T LT +IL L LSSPDELIGWTY DPSWARI
Sbjct: 181 LGDWGSGYGIAAQALTAVVRAHDGRGPQTALTYSILRALSLSSPDELIGWTYADPSWARI 240
Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297
AALVPVVVSCA+AGDEVANKIL +SVEELA SVKAVVQRL L GEDGK SFPLVMVGGVL
Sbjct: 241 AALVPVVVSCADAGDEVANKILLESVEELASSVKAVVQRLGLCGEDGKGSFPLVMVGGVL 300
Query: 298 EANRRWDIGREVVKCILRDYPGAVPIRPKV 327
EAN+ WDIG+EVV CI +DYPG +PIRPKV
Sbjct: 301 EANKTWDIGKEVVNCIYKDYPGTLPIRPKV 330
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356501411|ref|XP_003519518.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust.
Identities = 262/331 (79%), Positives = 289/331 (87%), Gaps = 4/331 (1%)
Query: 1 MKRYRNGEIWDFET---AEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR 57
MKRYRNGEIW+FE + G V+LGLDGGTTSTVCICMP+I S S LP+LAR
Sbjct: 19 MKRYRNGEIWEFEDDMGVSDGDGTGVLLGLDGGTTSTVCICMPMIPFSHSQLQSLPILAR 78
Query: 58 AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
A AGCSNHNSVGE AARETIE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL W
Sbjct: 79 AVAGCSNHNSVGEIAARETIEQVMADALSKCGSKRSLVQAVCLAVSGVNHPTDQQRILGW 138
Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
LRDIFP +VRLYV NDA+AALASGTMGKLHGCVLIAGTG+IAYGFTEDG++ARAAGAGP+
Sbjct: 139 LRDIFPSHVRLYVRNDAVAALASGTMGKLHGCVLIAGTGSIAYGFTEDGKEARAAGAGPV 198
Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
LGDWGSGYGIAAQALTAV+RA+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 199 LGDWGSGYGIAAQALTAVVRAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 258
Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297
AALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L G+DGK +FPLVMVGGVL
Sbjct: 259 AALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGQDGKSAFPLVMVGGVL 318
Query: 298 EAN-RRWDIGREVVKCILRDYPGAVPIRPKV 327
EAN RRWDIG+EV+ CI + + G +PIRPKV
Sbjct: 319 EANRRRWDIGKEVMNCISKYFSGVIPIRPKV 349
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255648369|gb|ACU24635.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1333), Expect = e-144, Method: Compositional matrix adjust.
Identities = 259/331 (78%), Positives = 287/331 (86%), Gaps = 4/331 (1%)
Query: 1 MKRYRNGEIWDFET---AEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR 57
MKRYRNGEIW+FE + G V+LGLDGGTTSTVCICMP+I S S LP+LAR
Sbjct: 19 MKRYRNGEIWEFEDDMGVSDGDGTGVLLGLDGGTTSTVCICMPMIPFSHSQLQSLPILAR 78
Query: 58 AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
A AGCSNHNSVGE AARE IE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL W
Sbjct: 79 AVAGCSNHNSVGEIAAREAIEQVMADALSKCGSKRSLVQAVCLAVSGVNHPTDQQRILGW 138
Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
LRDIFP +VRLYV NDA+AALASGTMGKLHGCVLIAGTG+IAYGFTEDG++ARAAGAGP+
Sbjct: 139 LRDIFPSHVRLYVRNDAVAALASGTMGKLHGCVLIAGTGSIAYGFTEDGKEARAAGAGPV 198
Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
LGDWGSGYGIAAQALTAV+RA+D RGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 199 LGDWGSGYGIAAQALTAVVRAHDDRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 258
Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297
AALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L G+DGK +FPLVMVGGVL
Sbjct: 259 AALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGQDGKSAFPLVMVGGVL 318
Query: 298 EAN-RRWDIGREVVKCILRDYPGAVPIRPKV 327
EAN RRWDIG+EV+ C+ + + G +PIRPKV
Sbjct: 319 EANRRRWDIGKEVMNCVSKYFSGVIPIRPKV 349
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494027|ref|XP_003617302.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] gi|355518637|gb|AET00261.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/330 (77%), Positives = 284/330 (86%), Gaps = 3/330 (0%)
Query: 1 MKRYRNGEIWDFET--AEESGGREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLAR 57
MKRYRNGE W+FE S V+LGLDGGTTSTVCICMP +I S S LP+L+R
Sbjct: 1 MKRYRNGETWEFENDINNVSVSDGVLLGLDGGTTSTVCICMPMIIHFSHSQLQSLPILSR 60
Query: 58 AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
A AGCSNHNSVGE AARET+E+VMADAL K GS RS+VRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 61 AVAGCSNHNSVGEIAARETLEQVMADALSKCGSKRSSVRAVCLAVSGVNHPTDQQRILSW 120
Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
LRDIFP NVRLYV NDA+AALASGT+GKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP+
Sbjct: 121 LRDIFPSNVRLYVQNDAVAALASGTIGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPV 180
Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
LGDWGSGYGI+AQALTAVI A+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 181 LGDWGSGYGISAQALTAVIEAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 240
Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297
AALVPVVVSCAEAGDEVANKIL S +ELA SVKAVV RL L G+D K +FPLVMVGGVL
Sbjct: 241 AALVPVVVSCAEAGDEVANKILLKSAQELASSVKAVVGRLGLCGQDEKGAFPLVMVGGVL 300
Query: 298 EANRRWDIGREVVKCILRDYPGAVPIRPKV 327
EAN +WD+G+EV+KCI + +P +PIRPKV
Sbjct: 301 EANTKWDVGKEVIKCISKYFPRVLPIRPKV 330
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357494031|ref|XP_003617304.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] gi|355518639|gb|AET00263.1| N-acetyl-D-glucosamine kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/330 (77%), Positives = 284/330 (86%), Gaps = 3/330 (0%)
Query: 1 MKRYRNGEIWDFET--AEESGGREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLAR 57
MKRYRNGE W+FE S V+LGLDGGTTSTVCICMP +I S S LP+L+R
Sbjct: 13 MKRYRNGETWEFENDINNVSVSDGVLLGLDGGTTSTVCICMPMIIHFSHSQLQSLPILSR 72
Query: 58 AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW 117
A AGCSNHNSVGE AARET+E+VMADAL K GS RS+VRAVCLAVSGVNHPTDQQRIL+W
Sbjct: 73 AVAGCSNHNSVGEIAARETLEQVMADALSKCGSKRSSVRAVCLAVSGVNHPTDQQRILSW 132
Query: 118 LRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177
LRDIFP NVRLYV NDA+AALASGT+GKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP+
Sbjct: 133 LRDIFPSNVRLYVQNDAVAALASGTIGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGPV 192
Query: 178 LGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237
LGDWGSGYGI+AQALTAVI A+DGRGP TMLTS+IL TL LSS +ELIGWTY DPSWARI
Sbjct: 193 LGDWGSGYGISAQALTAVIEAHDGRGPSTMLTSSILQTLGLSSAEELIGWTYADPSWARI 252
Query: 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297
AALVPVVVSCAEAGDEVANKIL S +ELA SVKAVV RL L G+D K +FPLVMVGGVL
Sbjct: 253 AALVPVVVSCAEAGDEVANKILLKSAQELASSVKAVVGRLGLCGQDEKGAFPLVMVGGVL 312
Query: 298 EANRRWDIGREVVKCILRDYPGAVPIRPKV 327
EAN +WD+G+EV+KCI + +P +PIRPKV
Sbjct: 313 EANTKWDVGKEVIKCISKYFPRVLPIRPKV 342
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554098|ref|XP_003545386.1| PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/330 (77%), Positives = 281/330 (85%), Gaps = 3/330 (0%)
Query: 1 MKRYRNGEIWDFE--TAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA 58
MKRYRNGEI ++E GG V+LGLDGGTTSTVCICMP+I S S LP+LARA
Sbjct: 19 MKRYRNGEIXEYEDDMGVSDGGTGVLLGLDGGTTSTVCICMPMIPFSHSQLXSLPILARA 78
Query: 59 AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWL 118
AGCSNHN VGE AARETIE+VMADAL K GS RS V+AVCLAVSGVNHPTDQQRIL WL
Sbjct: 79 VAGCSNHNGVGEIAARETIEQVMADALSKCGSKRSFVQAVCLAVSGVNHPTDQQRILGWL 138
Query: 119 RDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178
RDIFP +VRLYV NDA+AALASGTMGK+HGCVLIAGTG+IAYGFTEDG++ARAAGAGP+L
Sbjct: 139 RDIFPSHVRLYVRNDAVAALASGTMGKVHGCVLIAGTGSIAYGFTEDGKEARAAGAGPVL 198
Query: 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA 238
GDWGSGYGIAA LTAV+RA+DGRGP TMLTS+IL TL LSS + LIGWTY D WARIA
Sbjct: 199 GDWGSGYGIAAHGLTAVVRAHDGRGPSTMLTSSILQTLGLSSTEALIGWTYADFPWARIA 258
Query: 239 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298
ALVPVVV+CAEAGDEVANKIL DSV+ELA SVKAVV+RL L GEDGK +FPLVMVGGVLE
Sbjct: 259 ALVPVVVTCAEAGDEVANKILLDSVQELASSVKAVVERLGLCGEDGKSAFPLVMVGGVLE 318
Query: 299 AN-RRWDIGREVVKCILRDYPGAVPIRPKV 327
AN RRWDIG+EV+ CI + G +PIRPKV
Sbjct: 319 ANRRRWDIGKEVMNCISICFSGVIPIRPKV 348
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463605|ref|XP_004149522.1| PREDICTED: LOW QUALITY PROTEIN: N-acetyl-D-glucosamine kinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 253/331 (76%), Positives = 285/331 (86%), Gaps = 8/331 (2%)
Query: 1 MKRYRNGEIWDFETAEESGGREVILGLDGGTTSTVCICMPVISMSD----SLPDPLPVLA 56
MKR RN E+WDFE E GG ++ILG+DGGTTSTVC+C I +SD S P+LA
Sbjct: 1 MKRCRNDELWDFEH-EILGGDDIILGIDGGTTSTVCVC---IGLSDPRVVSPSMSCPMLA 56
Query: 57 RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILN 116
R GCSNHNSVGE AARET+E+VMA+AL KSGS RS+VRAVCLAVSGVNHPTDQQRIL+
Sbjct: 57 RVVGGCSNHNSVGETAARETLEQVMAEALSKSGSIRSSVRAVCLAVSGVNHPTDQQRILD 116
Query: 117 WLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGP 176
WLRDIFP +V LYV NDA+AALASGTMGKLHGCVLIAGTGTIAYGFTEDGR+ARAAGAGP
Sbjct: 117 WLRDIFPCHVNLYVQNDAVAALASGTMGKLHGCVLIAGTGTIAYGFTEDGREARAAGAGP 176
Query: 177 ILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR 236
ILGDWGSGYGIAAQALTA+IRA+DG GP T LT +IL TL+LSSPDELIGWTY DPSWAR
Sbjct: 177 ILGDWGSGYGIAAQALTAIIRAHDGXGPHTKLTYSILKTLDLSSPDELIGWTYADPSWAR 236
Query: 237 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 296
IAALVPVVV+CAEAGDEVAN IL DSVEELALSV+AV+QRL L+GEDG+ +FPLVMVGGV
Sbjct: 237 IAALVPVVVACAEAGDEVANNILLDSVEELALSVRAVIQRLGLAGEDGQEAFPLVMVGGV 296
Query: 297 LEANRRWDIGREVVKCILRDYPGAVPIRPKV 327
LEA RRWDI ++V+ I ++YPG +P+ PKV
Sbjct: 297 LEAKRRWDIAKKVINSISKEYPGILPVWPKV 327
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460020|ref|XP_004147744.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis sativus] gi|449516451|ref|XP_004165260.1| PREDICTED: N-acetyl-D-glucosamine kinase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 250/352 (71%), Positives = 286/352 (81%), Gaps = 15/352 (4%)
Query: 2 KRYRNGEIWDFE---TAEESGGR---EVILGLDGGTTSTVCICMPVIS-MSDSLPDPLPV 54
K++RNGEI +F+ +A +GGR +VILG+DGGTTST C+C+P + S LPD LP+
Sbjct: 3 KKHRNGEISEFDRELSAGTAGGRAVGDVILGIDGGTTSTTCVCLPFLHPHSLHLPDSLPL 62
Query: 55 LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRI 114
LAR AGCSNHNSVGE AARET+E+VMA+AL KSG + SAVRA+CL++SGVNHPTDQQRI
Sbjct: 63 LARVEAGCSNHNSVGETAARETLEQVMAEALSKSGLDLSAVRAICLSISGVNHPTDQQRI 122
Query: 115 LNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174
LNW RD FP +V+LYV NDA AALASGTMGKL GCVLIAGTG+IAYGFT+DGR+ARAAGA
Sbjct: 123 LNWFRDKFPSHVKLYVRNDAAAALASGTMGKLSGCVLIAGTGSIAYGFTDDGREARAAGA 182
Query: 175 GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234
GPILGDWGSGYGI+AQALTA+IRA+DGRGP T LT++IL TL LSS DELIGWTY D SW
Sbjct: 183 GPILGDWGSGYGISAQALTAIIRAHDGRGPQTKLTNSILQTLGLSSADELIGWTYADQSW 242
Query: 235 ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG 294
ARIAALVP VV+CAEAGDEVAN ILQDSV+ELALSV AVVQRL L G DGK SFPLVMVG
Sbjct: 243 ARIAALVPAVVACAEAGDEVANNILQDSVKELALSVTAVVQRLGLCGSDGKGSFPLVMVG 302
Query: 295 GVLEANRRWDIGREVVKCILRDYPGAVPIRPKV--------CIWPHWHSCDQ 338
GVLE N+ W I +EV+ CI +DYPG VPI PKV W C+Q
Sbjct: 303 GVLEGNKGWGIAQEVINCISKDYPGVVPIWPKVEPAIGAALLAWNFLKDCEQ 354
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 370 | ||||||
| TAIR|locus:2028135 | 351 | AT1G30540 [Arabidopsis thalian | 0.851 | 0.897 | 0.693 | 9.1e-116 | |
| DICTYBASE|DDB_G0284433 | 319 | DDB_G0284433 "N-acetyl-D-gluco | 0.770 | 0.893 | 0.358 | 6.4e-44 | |
| UNIPROTKB|Q8EBK6 | 300 | nagK "N-acetylglucosamine kina | 0.721 | 0.89 | 0.270 | 9.1e-13 | |
| TIGR_CMR|SO_3507 | 300 | SO_3507 "conserved hypothetica | 0.721 | 0.89 | 0.270 | 9.1e-13 | |
| UNIPROTKB|F1SLE3 | 360 | NAGK "Uncharacterized protein" | 0.762 | 0.783 | 0.270 | 4.6e-10 | |
| UNIPROTKB|Q3SZM9 | 344 | NAGK "N-acetyl-D-glucosamine k | 0.672 | 0.723 | 0.267 | 6.9e-10 | |
| UNIPROTKB|Q9UJ70 | 344 | NAGK "N-acetyl-D-glucosamine k | 0.672 | 0.723 | 0.274 | 8.9e-10 | |
| RGD|1305057 | 343 | Nagk "N-acetylglucosamine kina | 0.675 | 0.728 | 0.249 | 1.3e-08 | |
| UNIPROTKB|Q81QF9 | 303 | BAS2294 "Uncharacterized prote | 0.440 | 0.537 | 0.284 | 1.5e-08 | |
| TIGR_CMR|BA_2466 | 303 | BA_2466 "conserved hypothetica | 0.440 | 0.537 | 0.284 | 1.5e-08 |
| TAIR|locus:2028135 AT1G30540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 219/316 (69%), Positives = 257/316 (81%)
Query: 13 ETAEESGG-REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED 71
E EE+G VILGLDGG TSTVC+C+P S + PDPLP+L RA AGC+N NSVGE
Sbjct: 20 EATEENGFVNGVILGLDGGATSTVCVCVPFFSFGERFPDPLPILGRAVAGCTNRNSVGET 79
Query: 72 AARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVH 131
AAR+++E+V+++AL++SG ++S VR VCL VSGVNHP+DQ++I NW+RD+FP +V++YV
Sbjct: 80 AARDSLEQVISEALVQSGFDKSDVRGVCLGVSGVNHPSDQEKIENWIRDMFPSHVKVYVQ 139
Query: 132 NDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQA 191
NDA+ ALASGTMGKLHGCVLIAGTG IAYGF E PILGDWGSGYGIAAQA
Sbjct: 140 NDAIVALASGTMGKLHGCVLIAGTGCIAYGFDEDGKEARASGGGPILGDWGSGYGIAAQA 199
Query: 192 LTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAG 251
LTAVIRA+DGRGP TMLTS IL L LSSPDELIGWTY DPSWARIAALVP VVSCAEAG
Sbjct: 200 LTAVIRAHDGRGPQTMLTSTILKALGLSSPDELIGWTYADPSWARIAALVPQVVSCAEAG 259
Query: 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVK 311
DE+++KIL D+ E+LALSVKAVVQRL L G+DG SFP+VMVGGVL AN++WDIG+EV K
Sbjct: 260 DEISDKILVDAAEDLALSVKAVVQRLGLCGKDGTASFPVVMVGGVLNANQKWDIGKEVSK 319
Query: 312 CILRDYPGAVPIRPKV 327
I R +PGA I PKV
Sbjct: 320 RINRYFPGAQTIIPKV 335
|
|
| DICTYBASE|DDB_G0284433 DDB_G0284433 "N-acetyl-D-glucosamine kinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 463 (168.0 bits), Expect = 6.4e-44, P = 6.4e-44
Identities = 111/310 (35%), Positives = 169/310 (54%)
Query: 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKV 80
+E+ +G+DGG T T + + DS L AR + CSN++SVGED A+ I +
Sbjct: 3 KEIFIGIDGGGTKTSTVAV------DSNGQEL---ARHTSPCSNYHSVGEDLAKAAINEG 53
Query: 81 MADALLK------SGSNRSA-VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHND 133
+ + K N+ V ++CL +SGV+ D+ + +W+ ++ ++ +HND
Sbjct: 54 IKYVIRKVKETITDDDNKEVTVGSICLGMSGVDREKDKLLVKSWVTELLGESINYSIHND 113
Query: 134 ALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALT 193
A+ AL+SGT GKL G V+I GTG I+ GF P+LGD+GSGY I L
Sbjct: 114 AIVALSSGTQGKLFGVVIICGTGCISLGFNREGVSGRSGGWGPLLGDYGSGYQIGYDILR 173
Query: 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEA 250
V++A D GP T LT +L L+L+ ++LI W Y DP SW + A L P+ A+
Sbjct: 174 HVLKAKDQVGPKTSLTQVLLEKLQLTKEEDLISWAY-DPKTQSWQKFAQLSPLAFEQAQL 232
Query: 251 GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310
GDE++N IL D+ L + +V+++L L E+ FPLV GG +E R+ + +
Sbjct: 233 GDEISNLILVDAANALYDLINSVIKKLGLDKEE---KFPLVYTGGNIE--RKGILSDLLS 287
Query: 311 KCILRDYPGA 320
K I+ +YP A
Sbjct: 288 KKIMENYPNA 297
|
|
| UNIPROTKB|Q8EBK6 nagK "N-acetylglucosamine kinase NagK" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 80/296 (27%), Positives = 126/296 (42%)
Query: 17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76
++ +++ +G+DGG + C I +D VL AG +N G E+
Sbjct: 5 QTNDQQLFIGVDGGGSK----CRATIYTADGT-----VLGTGVAGRANPLH-GLAQTFES 54
Query: 77 IEKVMADALLKSG--SNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDA 134
IE ALL +G + S + L ++GVN P Q ++NW +YV D
Sbjct: 55 IEASAHQALLDAGMKATDSHLLVAGLGLAGVNVPRLYQDVVNWQHPF----AAMYVTTDL 110
Query: 135 LAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTA 194
A G G V+I GTG+ Y LGD GSG + +A
Sbjct: 111 HTACIGAHRGA-DGAVIITGTGSCGYAHVGDASLSIGGHGFA-LGDKGSGAWLGLKAAEH 168
Query: 195 VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254
V+ A DG T LT +LS L + ++ S + A L V+ CA AGD+V
Sbjct: 169 VLLALDGFATPTALTEMLLSHLGVKDALGIVEHL-AGKSSSCYAQLARNVLDCANAGDQV 227
Query: 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310
A I+Q+ + ++ + ++L + + M+GG+ E + W +G +VV
Sbjct: 228 AIAIVQEGADYIS----EMARKLFML-----NPVRFSMIGGLAEPLQAW-LGSDVV 273
|
|
| TIGR_CMR|SO_3507 SO_3507 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 189 (71.6 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 80/296 (27%), Positives = 126/296 (42%)
Query: 17 ESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET 76
++ +++ +G+DGG + C I +D VL AG +N G E+
Sbjct: 5 QTNDQQLFIGVDGGGSK----CRATIYTADGT-----VLGTGVAGRANPLH-GLAQTFES 54
Query: 77 IEKVMADALLKSG--SNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDA 134
IE ALL +G + S + L ++GVN P Q ++NW +YV D
Sbjct: 55 IEASAHQALLDAGMKATDSHLLVAGLGLAGVNVPRLYQDVVNWQHPF----AAMYVTTDL 110
Query: 135 LAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTA 194
A G G V+I GTG+ Y LGD GSG + +A
Sbjct: 111 HTACIGAHRGA-DGAVIITGTGSCGYAHVGDASLSIGGHGFA-LGDKGSGAWLGLKAAEH 168
Query: 195 VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254
V+ A DG T LT +LS L + ++ S + A L V+ CA AGD+V
Sbjct: 169 VLLALDGFATPTALTEMLLSHLGVKDALGIVEHL-AGKSSSCYAQLARNVLDCANAGDQV 227
Query: 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310
A I+Q+ + ++ + ++L + + M+GG+ E + W +G +VV
Sbjct: 228 AIAIVQEGADYIS----EMARKLFML-----NPVRFSMIGGLAEPLQAW-LGSDVV 273
|
|
| UNIPROTKB|F1SLE3 NAGK "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 82/303 (27%), Positives = 129/303 (42%)
Query: 20 GREVILGLDGGTTSTVCICMPVISMSDS------LPDPLPVLARAAAGCSNHNSVGEDAA 73
GRE G GG +S++ + + L + +LA A +NH +G D
Sbjct: 2 GREANGGTSGGGSSSMAALYGGVEGGGTRSKVLLLSEDGQILAEADGLSTNHWLIGTDKC 61
Query: 74 RETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQRIL-NWLRDIFPGNVRLY-V 130
E I +++ A K+G + +R++ L++SG + D RIL LRD FP Y +
Sbjct: 62 VERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE-DAVRILMEELRDRFPYLSESYLI 120
Query: 131 HNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQ 190
DA ++A+ T G VLI+GTG+ ++GD GS Y IA Q
Sbjct: 121 TTDAAGSIATATPDG--GIVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQ 178
Query: 191 ALTAVIRAYDG--RGP-DTMLTSNILSTLELSSPDEL--IGWTYVDPSWARIAALVPVVV 245
A+ V + D P D + PD L + Y D R A V
Sbjct: 179 AVKIVFDSIDNLEAAPHDIGYVKQAMFNY-FQVPDRLGILTHLYRDFDKCRFAGFCRKVA 237
Query: 246 SCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDI 305
A+ GD ++ I + + E L V AV+ + G+ P++ VG V ++ W++
Sbjct: 238 EGAQQGDPLSRYIFRKAGEMLGRHVVAVLPEIDPVLFQGEIGLPILCVGSVWKS---WEL 294
Query: 306 GRE 308
+E
Sbjct: 295 LKE 297
|
|
| UNIPROTKB|Q3SZM9 NAGK "N-acetyl-D-glucosamine kinase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 167 (63.8 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 70/262 (26%), Positives = 114/262 (43%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R + L++SG + +
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRGLGLSLSGGDQEDAVR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 86 MLMEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGP-DTMLTSNILSTLELSSPDEL--IG 226
++GD GS Y IA QA+ V + D P D + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFNY-FQVPDRLGILT 202
Query: 227 WTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKH 286
Y D +R A V A+ GD ++ I + + E L V AV+ + G+
Sbjct: 203 HLYRDFDKSRFAGFCRKVAEGAQQGDPLSRCIFRKAGEMLGRHVVAVLPEIDPVLFQGEM 262
Query: 287 SFPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 263 GLPILCVGSVWKS---WELLKE 281
|
|
| UNIPROTKB|Q9UJ70 NAGK "N-acetyl-D-glucosamine kinase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 8.9e-10, P = 8.9e-10
Identities = 72/262 (27%), Positives = 114/262 (43%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G D E I +++ A K+G + +R++ L++SG + D
Sbjct: 26 ILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSLGLSLSGGDQE-DAG 84
Query: 113 RIL-NWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXX 170
RIL LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 85 RILIEELRDRFPYLSESYLITTDAAGSIATATPDG--GVVLISGTGSNCRLINPDGSESG 142
Query: 171 XXXXXPILGDWGSGYGIAAQALTAVIRAYDG--RGPDTMLTSNILSTLELSSPDEL--IG 226
++GD GS Y IA QA+ V + D P + PD L +
Sbjct: 143 CGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILT 202
Query: 227 WTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKH 286
Y D R A + A+ GD ++ I + + E L + AV+ + GK
Sbjct: 203 HLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKI 262
Query: 287 SFPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 263 GLPILCVGSVWKS---WELLKE 281
|
|
| RGD|1305057 Nagk "N-acetylglucosamine kinase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 156 (60.0 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 65/261 (24%), Positives = 113/261 (43%)
Query: 54 VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQ 112
+LA A +NH +G E I +++ A K+G + +R++ L++SG +
Sbjct: 26 ILAEADGLSTNHWLIGTGTCVERINEMVDRAKRKAGVDPLVPLRSLGLSLSGGEQEDAVR 85
Query: 113 RILNWLRDIFPGNVRLY-VHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEXXXXXXX 171
++ LRD FP Y + DA ++A+ T G VLI+GTG+
Sbjct: 86 LLMEELRDRFPYLSESYFITTDAAGSIATATPDG--GIVLISGTGSNCRLINPDGSESGC 143
Query: 172 XXXXPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTL--ELSSPDEL--IGW 227
++GD GS Y IA QA+ V + D ++ + PD L +
Sbjct: 144 GGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVKQAMFNYFQVPDRLGILTH 203
Query: 228 TYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 287
Y D ++ A + A+ GD ++ I + + E L V AV+ + G+
Sbjct: 204 LYRDFDKSKFAGFCQKIAEGAQQGDPLSRFIFRKAGEMLGRHVVAVLPEIDPVLFQGELG 263
Query: 288 FPLVMVGGVLEANRRWDIGRE 308
P++ VG V ++ W++ +E
Sbjct: 264 LPILCVGSVWKS---WELLKE 281
|
|
| UNIPROTKB|Q81QF9 BAS2294 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/169 (28%), Positives = 80/169 (47%)
Query: 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGT 157
+CL ++G++ + L L+ + +++ V NDA+ A A+ GK G + I GTG
Sbjct: 66 ICLGLAGISGANTNELTLR-LKQKY--GIQIEVFNDAMIAHAAALKGK-DGILTIGGTGA 121
Query: 158 IAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217
I G + ILGD GSGY IA Q L + +D L+ I +
Sbjct: 122 ICLG-RKGEVYEYSGGWGHILGDEGSGYWIALQGLKRMANQFDQGVTLCPLSLRIQDEFQ 180
Query: 218 LSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEEL 266
L + + Y S ++AA+ P+V+ A G++ A++I+ + EL
Sbjct: 181 LLTSSHIKRLVY-SSSKDKVAAIAPLVIREARNGNDAAHEIMMQAGNEL 228
|
|
| TIGR_CMR|BA_2466 BA_2466 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 48/169 (28%), Positives = 80/169 (47%)
Query: 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGT 157
+CL ++G++ + L L+ + +++ V NDA+ A A+ GK G + I GTG
Sbjct: 66 ICLGLAGISGANTNELTLR-LKQKY--GIQIEVFNDAMIAHAAALKGK-DGILTIGGTGA 121
Query: 158 IAYGFTEXXXXXXXXXXXPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217
I G + ILGD GSGY IA Q L + +D L+ I +
Sbjct: 122 ICLG-RKGEVYEYSGGWGHILGDEGSGYWIALQGLKRMANQFDQGVTLCPLSLRIQDEFQ 180
Query: 218 LSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEEL 266
L + + Y S ++AA+ P+V+ A G++ A++I+ + EL
Sbjct: 181 LLTSSHIKRLVY-SSSKDKVAAIAPLVIREARNGNDAAHEIMMQAGNEL 228
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| gw1.XIV.3021.1 | hypothetical protein (319 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 370 | |||
| pfam01869 | 257 | pfam01869, BcrAD_BadFG, BadF/BadG/BcrA/BcrD ATPase | 4e-53 | |
| COG2971 | 301 | COG2971, COG2971, Predicted N-acetylglucosamine ki | 2e-40 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 1e-04 |
| >gnl|CDD|216750 pfam01869, BcrAD_BadFG, BadF/BadG/BcrA/BcrD ATPase family | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 4e-53
Identities = 88/277 (31%), Positives = 124/277 (44%), Gaps = 27/277 (9%)
Query: 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85
G+DGG+T T + M D VL RA +G +N SVG +AA + I + +AL
Sbjct: 1 GIDGGSTKTKAVLMDE--------DGE-VLGRAISGSANIESVGVEAAVKNIVDAINEAL 51
Query: 86 LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNW-LRDIFPGNVRLYVHNDALAALASGTMG 144
++G + + L G + +R+I + VH D ALA T G
Sbjct: 52 EEAGLDPEDIEYRGLT--GYGLAGLDGKFAKDIVREIL---EEISVHTDGAVALAPATRG 106
Query: 145 KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGP 204
+ G + I GTG+ G +DG+ R G G GD GS IAA+AL AV+R DG
Sbjct: 107 E-DGVIDIGGTGSKVIGL-DDGKVVRFGGNGFCAGDEGSFLWIAARALGAVLRELDGLAA 164
Query: 205 DTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQDSV 263
T L ++ L D+LI Y + A VV A +GD A IL +
Sbjct: 165 KTTLADVVMKALG---VDDLIAVAYRKGAINSDCAVFAEQVVEHALSGDPKAEDILAGAA 221
Query: 264 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300
E LAL V A+++RL +V+ GGV +
Sbjct: 222 ESLALRVAALLKRLGPVP------DQVVLTGGVAKNE 252
|
This family includes the BadF and BadG proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase. An uncharacterized protein from Aquifex aeolicus contains two copies of this region suggesting that the family may structurally dimerise. This family appears to be related to pfam00370. Length = 257 |
| >gnl|CDD|225518 COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 2e-40
Identities = 86/281 (30%), Positives = 136/281 (48%), Gaps = 23/281 (8%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
LG+DGG T T + ++D + VL R +G +N VG++ A I+ + +
Sbjct: 7 FLGVDGGGTKTRAV------LADEDGN---VLGRGKSGPANIQLVGKEEAVRNIKDAIRE 57
Query: 84 ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
AL ++G + A+ ++ ++ R F G V V ND L AL
Sbjct: 58 ALDEAGLKPDEIAAIVAGLALAGANVEEAREELERLLPFAGKVD--VENDGLIALRGALG 115
Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
G ++IAGTG+I YG + GR R G G +GD GSG I +AL +RA+DGR
Sbjct: 116 DD-DGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIGDEGSGAWIGREALQEALRAFDGRR 173
Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAALVPVVVSCAEAGDEVANKILQDS 262
T LT +++ L P++L+ + Y P +IAAL P V A GD VA +IL+++
Sbjct: 174 EATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRILKEA 232
Query: 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303
A + +++ LS+ K L ++GG+ + +
Sbjct: 233 ----AAYIATLLEALSIFNGSEK----LSLLGGLAPSYPYY 265
|
Length = 301 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 1e-04
Identities = 52/207 (25%), Positives = 78/207 (37%), Gaps = 44/207 (21%)
Query: 25 LGLDGGTTSTVCI-------CMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETI 77
LG+D G+TST +P + + P V E+A RE +
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRPGAVTDLDEL---------EEALRELL 51
Query: 78 EKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFP--------GNVRLY 129
++ + + + AV + G +++ I+ + P G V +
Sbjct: 52 KEALRQLKSE-------IDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPVA 104
Query: 130 VHNDA-LAALASGTMGKLH--GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYG 186
V NDA AALA G GK V+ GTGT EDG+ A +G
Sbjct: 105 VVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGKGGVGA----------AGEL 154
Query: 187 IAAQALTAVIRAYDGRGPDTMLTSNIL 213
A+AL AV+ DG +LT + L
Sbjct: 155 GIAEALAAVLNLLDGLPDAVVLTGSAL 181
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 370 | |||
| KOG1794 | 336 | consensus N-Acetylglucosamine kinase [Carbohydrate | 100.0 | |
| COG2971 | 301 | Predicted N-acetylglucosamine kinase [Carbohydrate | 100.0 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 100.0 | |
| PRK13310 | 303 | N-acetyl-D-glucosamine kinase; Provisional | 100.0 | |
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 100.0 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 100.0 | |
| PRK09557 | 301 | fructokinase; Reviewed | 100.0 | |
| PRK05082 | 291 | N-acetylmannosamine kinase; Provisional | 99.98 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 99.98 | |
| PRK12408 | 336 | glucokinase; Provisional | 99.97 | |
| PRK00292 | 316 | glk glucokinase; Provisional | 99.96 | |
| PRK13311 | 256 | N-acetyl-D-glucosamine kinase; Provisional | 99.96 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 99.95 | |
| TIGR00749 | 316 | glk glucokinase, proteobacterial type. This model | 99.94 | |
| PF00480 | 179 | ROK: ROK family; InterPro: IPR000600 A family of b | 99.82 | |
| TIGR02707 | 351 | butyr_kinase butyrate kinase. This model represent | 99.78 | |
| PTZ00288 | 405 | glucokinase 1; Provisional | 99.77 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 99.7 | |
| PF02685 | 316 | Glucokinase: Glucokinase; InterPro: IPR003836 Gluc | 99.55 | |
| COG0837 | 320 | Glk Glucokinase [Carbohydrate transport and metabo | 99.34 | |
| smart00732 | 99 | YqgFc Likely ribonuclease with RNase H fold. YqgF | 99.21 | |
| PLN02914 | 490 | hexokinase | 99.16 | |
| PTZ00107 | 464 | hexokinase; Provisional | 99.1 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 99.1 | |
| PLN02405 | 497 | hexokinase | 99.07 | |
| PLN02596 | 490 | hexokinase-like | 99.0 | |
| PLN02362 | 509 | hexokinase | 98.97 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 98.81 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.75 | |
| KOG1369 | 474 | consensus Hexokinase [Carbohydrate transport and m | 98.66 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 98.52 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 98.33 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 98.33 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 98.27 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 98.15 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 98.08 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 98.06 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.04 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 97.88 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 97.87 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 97.85 | |
| PRK04123 | 548 | ribulokinase; Provisional | 97.81 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 97.78 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 97.73 | |
| PF00349 | 206 | Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo | 97.7 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 97.64 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 97.63 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 97.61 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 97.58 | |
| PLN02295 | 512 | glycerol kinase | 97.58 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 97.57 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 97.57 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 97.55 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 97.43 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 97.39 | |
| PRK15027 | 484 | xylulokinase; Provisional | 97.37 | |
| PF00871 | 388 | Acetate_kinase: Acetokinase family; InterPro: IPR0 | 97.36 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 97.32 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.15 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 97.1 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 97.01 | |
| PF05378 | 176 | Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r | 96.98 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 96.93 | |
| PRK13324 | 258 | pantothenate kinase; Reviewed | 96.86 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 96.85 | |
| PLN02669 | 556 | xylulokinase | 96.84 | |
| PRK13326 | 262 | pantothenate kinase; Reviewed | 96.72 | |
| PRK12440 | 397 | acetate kinase; Reviewed | 96.6 | |
| PRK13320 | 244 | pantothenate kinase; Reviewed | 96.58 | |
| TIGR03722 | 322 | arch_KAE1 universal archaeal protein Kae1. This fa | 96.56 | |
| PRK09604 | 332 | UGMP family protein; Validated | 96.45 | |
| TIGR00016 | 404 | ackA acetate kinase. Acetate kinase is involved in | 96.33 | |
| TIGR00671 | 243 | baf pantothenate kinase, type III. This model desc | 96.31 | |
| PRK00180 | 402 | acetate kinase A/propionate kinase 2; Reviewed | 96.03 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 95.95 | |
| PRK07157 | 400 | acetate kinase; Provisional | 95.89 | |
| PRK12379 | 396 | propionate/acetate kinase; Provisional | 95.84 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 95.64 | |
| PRK12397 | 404 | propionate kinase; Reviewed | 95.54 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 95.43 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 95.17 | |
| COG4020 | 332 | Uncharacterized protein conserved in archaea [Func | 94.69 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 94.67 | |
| PRK13322 | 246 | pantothenate kinase; Reviewed | 94.45 | |
| TIGR03123 | 318 | one_C_unchar_1 probable H4MPT-linked C1 transfer p | 94.43 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 94.28 | |
| PF03652 | 135 | UPF0081: Uncharacterised protein family (UPF0081); | 94.21 | |
| PRK07058 | 396 | acetate kinase; Provisional | 94.08 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 93.76 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 93.7 | |
| PF03309 | 206 | Pan_kinase: Type III pantothenate kinase; InterPro | 93.7 | |
| COG0282 | 396 | ackA Acetate kinase [Energy production and convers | 93.64 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 93.57 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 93.42 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 93.29 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 93.27 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 93.2 | |
| PF03630 | 341 | Fumble: Fumble ; InterPro: IPR004567 Pantothenate | 93.04 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 92.96 | |
| PRK13331 | 251 | pantothenate kinase; Reviewed | 92.91 | |
| PLN02666 | 1275 | 5-oxoprolinase | 92.81 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 92.71 | |
| PLN02902 | 876 | pantothenate kinase | 92.61 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 92.38 | |
| PRK00109 | 138 | Holliday junction resolvase-like protein; Reviewed | 92.34 | |
| PF14639 | 150 | YqgF: Holliday-junction resolvase-like of SPT6 ; P | 92.3 | |
| PLN02920 | 398 | pantothenate kinase 1 | 92.24 | |
| TIGR03725 | 202 | bact_YeaZ universal bacterial protein YeaZ. This f | 91.9 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 91.61 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 91.47 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 90.95 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 90.69 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 90.59 | |
| COG0145 | 674 | HyuA N-methylhydantoinase A/acetone carboxylase, b | 90.53 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 90.37 | |
| KOG2707 | 405 | consensus Predicted metalloprotease with chaperone | 90.32 | |
| PF03727 | 243 | Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexo | 89.87 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 89.41 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 89.4 | |
| PRK13328 | 255 | pantothenate kinase; Reviewed | 88.94 | |
| COG0816 | 141 | Predicted endonuclease involved in recombination ( | 88.9 | |
| TIGR00250 | 130 | RNAse_H_YqgF RNAse H-fold protein YqgF. This prote | 88.2 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 87.49 | |
| COG5146 | 342 | PanK Pantothenate kinase, acetyl-CoA regulated [Co | 87.16 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 86.85 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 86.56 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 86.16 | |
| PF00814 | 268 | Peptidase_M22: Glycoprotease family; InterPro: IPR | 86.04 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 85.95 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 85.63 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 85.57 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 84.76 | |
| COG1214 | 220 | Inactive homolog of metal-dependent proteases, put | 83.33 | |
| PTZ00452 | 375 | actin; Provisional | 82.69 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 82.6 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 82.31 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 81.46 | |
| PF13941 | 457 | MutL: MutL protein | 81.4 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 81.32 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 80.05 |
| >KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=325.54 Aligned_cols=296 Identities=29% Similarity=0.439 Sum_probs=273.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC-cceEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-v~~Ig 99 (370)
.+++.|||+|.|.++++++|. +++++.+....++|+...+.+.+.+.|+++|+++..+.+.+++. ++++|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCccceee
Confidence 468999999999999999998 89999999999999998899999999999999999999999887 89999
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCc
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNV-RLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~ll 178 (370)
++++|.++++.+..|.+++++.||.+. .++|.||+..++++...|..+++++++|||+++.+++.||+..++|+|||++
T Consensus 73 L~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~i 152 (336)
T KOG1794|consen 73 LGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHMI 152 (336)
T ss_pred eecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCcc
Confidence 999999999999999999999999644 4999999999998888888999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCC----chhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHH
Q 017527 179 GDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254 (370)
Q Consensus 179 gd~Gs~~~iG~~~~~~~~~~~dg~~~~----~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~ 254 (370)
||+||+|||++++++-+++.+||..+. ..+.+.+.++|++.++.+++.+.|.++++.+++.+.+.+.+.|+.|||.
T Consensus 153 Gd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~~ 232 (336)
T KOG1794|consen 153 GDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDPL 232 (336)
T ss_pred CCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCHH
Confidence 999999999999999999999998876 5678899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh--CCCceeeCCCCC
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD--YPGAVPIRPKVC 328 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~--~p~~~~~~p~~~ 328 (370)
+.+||++++..||+.+.+++..++|+++++ -..+||+.|||+.+++.| .+-+...+... ||..+..+|+..
T Consensus 233 ~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-~~l~Iv~vG~V~~Sw~~l--~~Gfl~sls~~~~f~~~~l~~~k~s 305 (336)
T KOG1794|consen 233 SAEIFRNAGETLGRHVVAVLPQLPPTLKKG-KTLPIVCVGGVFDSWDLL--QEGFLDSLSDTRGFERVELYRPKES 305 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhccc-CcceEEEEcchhhHHHHH--HHHHHHHhhcccCccceEEEeeccc
Confidence 999999999999999999999999988876 358999999999999886 77787777663 577776666654
|
|
| >COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=294.21 Aligned_cols=272 Identities=31% Similarity=0.453 Sum_probs=234.7
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
++.|+||||.|||+|++++.|. +|+++.+...++.|.+..++++++++|.++|.+++.+++.+++++..++
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 4569999999999999999998 7999999999999998777799999999999999999999999998887
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcC
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llg 179 (370)
.|+.+...+... -...++..++..-.+.|+||+..|+.++. +.++++++++|||+++++. .+|+..|.|+|||++|
T Consensus 74 agla~ag~~~~~--~~~~~~~~l~~a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~Ig 149 (301)
T COG2971 74 AGLALAGANVEE--AREELERLLPFAGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIG 149 (301)
T ss_pred eeeeccCcchhH--HHHHHHHhcCccceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCcccc
Confidence 777777544321 12222444443138999999999999764 4579999999999999988 7899999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhhhHHHHHHHHhcCCHHHHHH
Q 017527 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKI 258 (370)
Q Consensus 180 d~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~i 258 (370)
|+||++|||+++++++++++||+.+.++|.+.++.+|+. +.++++.+.|... ....+++++|.|+++|.+||+.|++|
T Consensus 150 DegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~I 228 (301)
T COG2971 150 DEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRI 228 (301)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999996 8999999988543 44568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 259 l~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
+++++.++...+..+. .++ .+.++.+-||++...+.| .+.+++.+..
T Consensus 229 l~~aa~~i~~~~~~l~-~~~-------g~~~l~l~GG~~~~~~~~--~~~~~~~l~~ 275 (301)
T COG2971 229 LKEAAAYIATLLEALS-IFN-------GSEKLSLLGGLAPSYPYY--LSLFRRALLV 275 (301)
T ss_pred HHHHHHHHHHHHHHHh-ccc-------CCceEEEeccccccchhh--HHHHHHHhcC
Confidence 9999999888877775 333 278999999999999888 7777777644
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=279.36 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=213.0
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||||+|+|+++++++|. +|+++.+.+.+.. .+++++++.|.+.+++++++.+....++.+|||++||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPTD----TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 68999999999999999 8999988777653 2578899999999999999888777789999999999
Q ss_pred CCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccCCc
Q 017527 105 VNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 105 ~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~dG~ 167 (370)
++++. | +.+|++.|+++|+ +||+++||++++++++. + +.++++|+++|||+ |+|++.||+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~ 144 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGE 144 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCE
Confidence 87643 1 2479999999998 89999999999999874 2 35799999999998 678999999
Q ss_pred eEe-----eCCCCCCcCC-CC-chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 168 DAR-----AAGAGPILGD-WG-SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 168 l~~-----aGg~G~llgd-~G-s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
+++ +||+||+..+ .| ..|.||+.+|.+.+. +...+.+.+.+.+........+..... .. ...
T Consensus 145 ~~~G~~g~agEiGh~~v~~~g~~~C~cG~~gclE~~~------s~~al~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 213 (318)
T TIGR00744 145 IRHGHNGVGAEIGHIRMVPDGRLLCNCGKQGCIETYA------SATGLVRYAKRANAKPERAEVLLALGD----GD-GIS 213 (318)
T ss_pred EeecCCCCCcccCceEeCCCCCcccCCCCcchHHHHh------CHHHHHHHHHHHhccccccchhhcccc----cC-CCC
Confidence 976 7888888654 33 456666666543321 111232222222211010011100000 00 124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.+++++++++||+.|++++++++++||..++++++.|| |+.|||||++....+.| ++.+++.++++....
T Consensus 214 ~~~i~~~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~d--------P~~IvlgG~~~~~~~~~--~~~i~~~~~~~~~~~ 283 (318)
T TIGR00744 214 AKHVFVAARQGDPVAVDSYREVARWAGAGLADLASLFN--------PSAIVLGGGLSDAGDLL--LDPIRKSYKRWLFGG 283 (318)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEECChhhhCcHHH--HHHHHHHHHHHhhhc
Confidence 57899999999999999999999999999999999999 79999999999877766 999999998754221
Q ss_pred eeeCCCCCccccccccccc-ccccccceeEeeec
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQL 353 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (370)
..+...|..+..++ ++.+|||++++-++
T Consensus 284 -----~~~~~~i~~s~~~~~~~~~Gaa~~~~~~~ 312 (318)
T TIGR00744 284 -----ARQVADIIAAQLGNDAGLVGAADLARTYI 312 (318)
T ss_pred -----ccCCcEEEEcccCCchhhHHHHHHHHHhc
Confidence 12233455556554 67899998875443
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >PRK13310 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=273.07 Aligned_cols=266 Identities=16% Similarity=0.093 Sum_probs=198.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|+|+++++++|. +|+++.+.+.+++. .+++++++.|.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~ 64 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTPR---DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI 64 (303)
T ss_pred CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCCC---cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence 4799999999999999999 89999888776542 3688999999999988765432 245899999
Q ss_pred cCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++. +.+|+++|+++|+ +||+++||+|++++++. + +.++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv~~ 141 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVFN 141 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEEEC
Confidence 99976431 1489999999998 89999999999999874 3 34799999999998 6789999
Q ss_pred CceEe-----eCCCCCCcCCCC-----------chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc
Q 017527 166 GRDAR-----AAGAGPILGDWG-----------SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY 229 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~G-----------s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 229 (370)
|++++ +||+||+..+.. ..|.||+.+| +|.|. |...+.....
T Consensus 142 G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gc--------------------lE~~~--S~~al~~~~~ 199 (303)
T PRK13310 142 GKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGC--------------------IENYL--SGRGFEWLYQ 199 (303)
T ss_pred CEEeeCCCCccccccceeecccccccccccCCCccCCCCCcch--------------------HHHhh--cHHHHHHHHH
Confidence 99975 788888765432 1233333333 33332 2223322111
Q ss_pred cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHH
Q 017527 230 VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREV 309 (370)
Q Consensus 230 ~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v 309 (370)
..... ....+++++++++||+.|.+++++++++||..+++++++|| |+.|||||++.. .+.| ++.+
T Consensus 200 -~~~~~--~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ld--------P~~IvlgG~~~~-~~~~--~~~l 265 (303)
T PRK13310 200 -HYYGE--PLQAPEIIALYYQGDEQAVAHVERYLDLLAICLGNILTIVD--------PHLVVLGGGLSN-FDAI--YEQL 265 (303)
T ss_pred -HhccC--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEECCcccC-hHHH--HHHH
Confidence 00000 11357889999999999999999999999999999999999 799999999987 5665 7899
Q ss_pred HHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 310 VKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 310 ~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
++.++++... . .+...|..+..++ ++++|||.++
T Consensus 266 ~~~~~~~~~~-~-----~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 266 PKRLPRHLLP-V-----ARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHHhcc-c-----ccCceEEEcccCchHHHHhHHHHh
Confidence 9999875421 1 1244566667665 6688998876
|
|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=271.37 Aligned_cols=279 Identities=19% Similarity=0.177 Sum_probs=205.0
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
+..+++|||+|+|+++++++|. +|+++.+.+.+++... ..+.++++|.+.+++++.+.+ ...++.+||
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~~--~~~~~~~~i~~~i~~~~~~~~-~~~~~iGIg 71 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTPD--PEEAILEAILALVAELLKQAQ-GRVAIIGIG 71 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCCC--chhHHHHHHHHHHHHHHHhcC-CcCceEEEE
Confidence 3569999999999999999999 8999988888776543 446899999999999998775 334466666
Q ss_pred EeecCCCChh----------h--HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CCCeEEEEEcccceeeee
Q 017527 100 LAVSGVNHPT----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 100 IgvpG~~~~~----------~--~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~~~v~l~~GTGi~g~gi 162 (370)
++.||.++.. + ..+|++.|++.|+ +||+|+||+||++++|. +| .++++++++|||+ |+|+
T Consensus 72 i~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI-G~gi 148 (314)
T COG1940 72 IPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI-GGGI 148 (314)
T ss_pred eccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce-eEEE
Confidence 6666655432 1 1469999999998 89999999999999985 44 4789999999998 6689
Q ss_pred ccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH
Q 017527 163 TEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237 (370)
Q Consensus 163 i~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 237 (370)
+.||++++ +||+||+..+..+.|.||+.+|.+. +. |...+.++.+........
T Consensus 149 v~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~GclE~--------------------~a--s~~al~~~~~~~~~~~~~ 206 (314)
T COG1940 149 IVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRGCLET--------------------YA--SGRAILRRAAEALESEAG 206 (314)
T ss_pred EECCEEeecCCCccccccceEECCCCccCCCCCCchHH--------------------hc--cHHHHHHHHHhhcccccc
Confidence 99999987 7889998776544355665554322 21 222333221100000000
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEc-CcccCcccccchHHHHHHHHhh
Q 017527 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG-GVLEANRRWDIGREVVKCILRD 316 (370)
Q Consensus 238 a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgG-gv~~~~~~~~l~~~v~~~l~~~ 316 (370)
....+++++++.+||+.|++++++++.+|+.+++++++++| |+.||+|| +++...+.+ .+.+++.+.++
T Consensus 207 ~~~~~~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~--------P~~IvigG~g~~~~~~~~--~~~l~~~~~~~ 276 (314)
T COG1940 207 ELTAKDIFELAAAGDPLAKEVIERAADYLARGLANLINLLD--------PEVIVIGGGGVSALGDLL--LPRLRKLLAKY 276 (314)
T ss_pred CcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECcccccchhHH--HHHHHHHHHHh
Confidence 02468899999999999999999999999999999999999 79999999 888877776 88899888886
Q ss_pred CCCceeeCCCCCcccccccccccccccccceeE
Q 017527 317 YPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 317 ~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
... ....+.+..... ...++++.||+.+.
T Consensus 277 ~~~-~~~~~~~~~~~~---~~~~a~~~ga~~~~ 305 (314)
T COG1940 277 LFP-PVLRPRIVEAAL---GGNDAGLIGAALLA 305 (314)
T ss_pred hcc-hhcccchhhhhc---ccccccchhHHHHH
Confidence 654 211222221110 02346788888876
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=263.41 Aligned_cols=251 Identities=38% Similarity=0.555 Sum_probs=208.7
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||||+|||||+++++|. +|+++.+....+.|+...+.+.++++|.+++++++++.+.++.++..+++|.+|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999999 899999999999888766788999999999999999999988889999999999
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCch
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG 184 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~ 184 (370)
+..+.....+...+.. .++.+.||+..++.++.. +++|+++.|||++++++..+|+..|+|+|||+++|+||+
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg 144 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG 144 (271)
T ss_dssp EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence 9665544333332222 179999999998886644 689999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 017527 185 YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVE 264 (370)
Q Consensus 185 ~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~ 264 (370)
+|||+++++..++.+|++.+.+. |. ....+.+++.+++.++++|.+||+.|.+|++++++
T Consensus 145 ~~ig~~~L~~~~~~~d~~~~~~~--------~~------------~~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~ 204 (271)
T PF01869_consen 145 YWIGRRALRAVLRELDGRAEPTP--------YA------------KPASNARIAVFAPTVFEAAQQGDEVARDILAEAAD 204 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTSH--------HH------------HTT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhcCccccCc--------cc------------CCCChhheehhhHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999999877655 10 01124567889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 265 ELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 265 ~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
+|++.+..++..++. .++.|++.||++... .+ .+++++.|++..|..
T Consensus 205 ~la~~i~~~~~~~~~------~~~~v~l~GGv~~~~-~~--~~~l~~~l~~~~~~~ 251 (271)
T PF01869_consen 205 ELAELIKAVLKRLGP------EKEPVVLSGGVFKNS-PL--VKALRDALKEKLPKV 251 (271)
T ss_dssp HHHHHHHHHHHTCTC------CCCSEEEESGGGGCH-HH--HHHHGGGS-HHHHCC
T ss_pred HHHHHHHHHHHhcCC------CCCeEEEECCccCch-HH--HHHHHHHHHHhcCCC
Confidence 999999999999984 112399999999864 34 666766666655554
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=266.33 Aligned_cols=266 Identities=21% Similarity=0.136 Sum_probs=197.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|+|+++++++|. +|+++.+.+.+++. .+++++++.|.+.++++..+. ..+.+|||++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~----~~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTPR---DDYQQTIEAIATLVDMAEQAT----GQRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCCC---CCHHHHHHHHHHHHHHHHhhc----CCceEEEecC
Confidence 4799999999999999999 89999888776542 267888999999888877543 2467999999
Q ss_pred cCCCChh----------h--HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~----------~--~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++ | ..+|++.|+++|+ .||+++||++|+++++. + +.++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGi-G~giv~~ 141 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGC-GAGVAIN 141 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccce-EEEEEEC
Confidence 9997643 2 2579999999998 89999999999999874 2 34789999999998 6689999
Q ss_pred CceEe-----eCCCCCCcCCC----------CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 017527 166 GRDAR-----AAGAGPILGDW----------GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV 230 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~----------Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~ 230 (370)
|++++ +||+||+..++ |..|.||+.+| +|.+. |...+.+....
T Consensus 142 G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~Gc--------------------lE~~~--S~~al~~~~~~ 199 (301)
T PRK09557 142 GRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGC--------------------IETFI--SGTGFATDYRR 199 (301)
T ss_pred CEEEecCCCCCcccCceecccccccccccCCCCcCCCCCCCE--------------------EeEEE--cHHHHHHHHHH
Confidence 99976 78888875431 22333333322 22222 22233332110
Q ss_pred CCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHH
Q 017527 231 DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVV 310 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~ 310 (370)
... . ....+++++++++||+.|.+++++++++||.++.++++.|| |+.|||||+++.. +.| ++.++
T Consensus 200 ~~~-~--~~~~~~l~~~~~~gd~~a~~~l~~~~~~La~~l~~l~~~ld--------P~~IvlgG~~~~~-~~~--~~~l~ 265 (301)
T PRK09557 200 LSG-K--ALKGSEIIRLVEEGDPVAELAFRRYEDRLAKSLAHVINILD--------PDVIVLGGGMSNV-DRL--YPTLP 265 (301)
T ss_pred hcc-C--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccch-HHH--HHHHH
Confidence 000 0 11357889999999999999999999999999999999999 7999999999874 555 88899
Q ss_pred HHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 311 KCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 311 ~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
+.++++..... ...+|..+..++ ++++|||.++
T Consensus 266 ~~~~~~~~~~~------~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 266 ALLKQYVFGGE------CETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred HHHHHHhcccc------cCCeEEEcccCCchhhhhhhHhh
Confidence 99988653221 134455566555 6688988764
|
|
| >PRK05082 N-acetylmannosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=256.93 Aligned_cols=260 Identities=16% Similarity=0.128 Sum_probs=194.6
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+||||+|+|+++++++|. +|+++.+.+.+++.. .+++.+++.+.+.++++.. ++.+|||++|
T Consensus 3 ~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~p 64 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTPAS--QTPEALRQALSALVSPLQA-------QADRVAVAST 64 (291)
T ss_pred EEEEEECCCEEEEEEEcC---------CCcEEEEEEecCCCC--CCHHHHHHHHHHHHHHhhh-------cCcEEEEeCc
Confidence 799999999999999999 899998877665432 2577788888888877653 4679999999
Q ss_pred CCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C---CCCCeEEEEEcccceeeeeccCC
Q 017527 104 GVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M---GKLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 104 G~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~---g~~~~v~l~~GTGi~g~gii~dG 166 (370)
|+++.. | ..+|++.|+++|+ +||+++||++++++++. + +.++++++.+|||+ |+|++.||
T Consensus 65 G~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~G 141 (291)
T PRK05082 65 GIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLNG 141 (291)
T ss_pred ccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEECC
Confidence 986521 2 2479999999998 89999999999998874 2 34789999999998 66899999
Q ss_pred ceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 167 RDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 167 ~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
++++ +||+||+..+. |.-|.||+.+| +|.+. |...+.+...... . ...
T Consensus 142 ~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~Gc--------------------lE~~~--S~~al~~~~~~~~---~-~~~ 195 (291)
T PRK05082 142 KLLTGPGGLAGHIGHTLADPHGPVCGCGRRGC--------------------VEAIA--SGRAIAAAAQGWL---A-GCD 195 (291)
T ss_pred EEeeCCCCccccccceEecCCCCCCCCCCcCc--------------------hhhhc--CHHHHHHHHHHhh---c-CCC
Confidence 9865 88899986643 34444555443 22221 2223332111000 0 113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
...+++++.+||+.|.+++++++++||..+.+++++|| |+.|||||++.. .+.| ++.+++.+++. +..
T Consensus 196 ~~~i~~~~~~gd~~a~~~~~~~~~~la~~l~~l~~~~d--------pe~IvlgG~~~~-~~~~--~~~i~~~l~~~-~~~ 263 (291)
T PRK05082 196 AKTIFERAGQGDEQAQALINRSAQAIARLIADLKATLD--------CQCVVLGGSVGL-AEGY--LELVQAYLAQE-PAI 263 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccc-HHHH--HHHHHHHHHhc-ccc
Confidence 46789999999999999999999999999999999999 799999999875 4455 78899888873 221
Q ss_pred eeeCCCCCccccccccccc-ccccccceeE
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
....+..+..++ ++++|||.++
T Consensus 264 -------~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 264 -------YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred -------cCCeEEECccCCchhhhhHHHHh
Confidence 134566666655 6788999876
|
|
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=257.77 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=197.5
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|..+++|||+|+|+++++++|. +|+++.+.+.+++.. .+++. ++.+.+.+++++++.+ .++.+||
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gig 66 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGIV 66 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEEE
Confidence 4579999999999999999999 899999887766533 24554 9999999999998764 4799999
Q ss_pred EeecCCCChh--------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C---CCCCeEEEEEcccceee
Q 017527 100 LAVSGVNHPT--------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M---GKLHGCVLIAGTGTIAY 160 (370)
Q Consensus 100 IgvpG~~~~~--------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~---g~~~~v~l~~GTGi~g~ 160 (370)
|++||+++++ | ..+|++.|+++|+ +||+++||++++++++. . +..+++++++|||+ |+
T Consensus 67 ia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGI-G~ 143 (302)
T PRK09698 67 MGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGM-GF 143 (302)
T ss_pred EeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCce-EE
Confidence 9999986532 1 1379999999998 89999999999988774 2 34689999999998 66
Q ss_pred eeccCCceEe-----eCCCCCCcCC-CCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh
Q 017527 161 GFTEDGRDAR-----AAGAGPILGD-WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234 (370)
Q Consensus 161 gii~dG~l~~-----aGg~G~llgd-~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~ 234 (370)
|++.||++++ +||+||+..+ .+.-|.||+.+|. |.+. |...+.++......
T Consensus 144 giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~gcl--------------------E~~~--S~~al~~~~~~~~~- 200 (302)
T PRK09698 144 AVWMNGAPWTGAHGVAGELGHIPLGDMTQHCGCGNPGCL--------------------ETNC--SGMALRRWYEQQPR- 200 (302)
T ss_pred EEEECCEEeeCCCCCccccCceEeeCCCcccCCCCccch--------------------Hhhc--CHHHHHHHHHHhcC-
Confidence 8999999975 8888888653 3344555544432 2222 22233322110000
Q ss_pred HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 235 ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 235 ~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.....++++. .+|. .+++++.++||..|++++++|| |+.|||||++....+.+ .+.+++.++
T Consensus 201 ---~~~~~~l~~~--~~~~---~~~~~~~~~la~~l~~li~~ld--------P~~IvlgG~~~~~~~~~--~~~l~~~~~ 262 (302)
T PRK09698 201 ---DYPLSDLFVH--AGDH---PFIQSLLENLARAIATSINLFD--------PDAIILGGGVMDMPAFP--RETLIAMIQ 262 (302)
T ss_pred ---CCCHHHHHHH--cCCH---HHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCccccCchhH--HHHHHHHHH
Confidence 0123455554 3665 4788999999999999999999 79999999999877665 899999998
Q ss_pred hhCCCceeeCCCCCccccccccccc-ccccccceeEeeecc
Q 017527 315 RDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQLY 354 (370)
Q Consensus 315 ~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 354 (370)
++...+. .....+|..+..++ ++.+|||.+++-+++
T Consensus 263 ~~~~~~~----~~~~~~i~~~~~~~~a~~~GAa~~~~~~~~ 299 (302)
T PRK09698 263 KYLRKPL----PYEVVRFIYASSSDFNGAQGAAILAHQRFL 299 (302)
T ss_pred HHccCcc----ccCCcEEEECCcCCcccHHhHHHHHHHhhc
Confidence 8653322 12244555566555 668999988754443
|
|
| >PRK12408 glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=246.87 Aligned_cols=274 Identities=18% Similarity=0.119 Sum_probs=180.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC------eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~------il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.++|++||||||++++++|. ++. ++...+.++... +.+.+++++++++ . .+
T Consensus 15 ~~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~~-~---~~ 72 (336)
T PRK12408 15 PESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLAE-C---AP 72 (336)
T ss_pred cccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHhc-C---CC
Confidence 456899999999999999987 565 444444443322 2344555566654 1 35
Q ss_pred cceEEEeecCC-CChh-------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhc-C---------C----C-CCeEE
Q 017527 95 VRAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M---------G----K-LHGCV 150 (370)
Q Consensus 95 v~~IgIgvpG~-~~~~-------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~-~---------g----~-~~~v~ 150 (370)
+.+||||+||+ .+.. .|..+.+.|++.|+ + ||+++||+||+++++. + | . .++++
T Consensus 73 ~~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~ 150 (336)
T PRK12408 73 VRRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALV 150 (336)
T ss_pred cCEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEE
Confidence 88999999998 3210 12347799999998 7 5999999999999874 4 2 2 47899
Q ss_pred EEEcccceeeeeccCCc---eEeeCCCCCCcCCCCchHHH--HHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 151 LIAGTGTIAYGFTEDGR---DARAAGAGPILGDWGSGYGI--AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~---l~~aGg~G~llgd~Gs~~~i--G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
+++|||+ |+|+++||+ ...+||+||+..+..+.-+. -...| +... + .+.|.+. |...+.
T Consensus 151 i~~GTGi-Gggivi~g~~g~~~~agE~GH~~~~~~~~~~~~l~~~~~--------~~~~-~----~~~E~~~--Sg~gL~ 214 (336)
T PRK12408 151 LGPGTGL-GAALWIPNGGRPVVLPTEAGQAALAAASELEMQLLQHLL--------RTRT-H----VPIEHVL--SGPGLL 214 (336)
T ss_pred EECCCcc-eEEEEEcCCCceeeecCccccccCCCCCHHHHHHHHHHH--------hhCC-c----eeHhhee--cHHHHH
Confidence 9999998 557888886 34599999986543321110 01001 0000 0 0123332 222332
Q ss_pred HHhcc---CCChHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc-EEEEcCcccC-
Q 017527 226 GWTYV---DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEA- 299 (370)
Q Consensus 226 ~~~~~---~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~-VVlgGgv~~~- 299 (370)
+++.. ..........+++|++++++| |+.|++++++++++||..+.+++++|| |+. ||||||++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ld--------Pe~GIvIGGGIs~~~ 286 (336)
T PRK12408 215 NLYRALCALRGATPVHASPAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYG--------ARGGVYLAGGILPQI 286 (336)
T ss_pred HHHHHHHhhcCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCceEEEECchhHhH
Confidence 22110 000000012457899988886 999999999999999999999999999 799 9999999875
Q ss_pred cccccchHH--HHHHHHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 300 NRRWDIGRE--VVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 300 ~~~~~l~~~--v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+.+ .++ +++.+++ .+. .+..+.+.|..+.+++++++|||+++
T Consensus 287 ~~~l--~~~~f~~~~~~~-~~~----~~~~~~~~I~~~~~~~agl~GAa~~~ 331 (336)
T PRK12408 287 ADFL--ARSDFVERFLNK-GPM----RPALEQVPVKLVEHGQLGVLGAASWY 331 (336)
T ss_pred Hhhh--cCHHHHHHHhcc-Cch----hhHhcCCCEEEEeCCChHHHHHHHHH
Confidence 4444 444 5555554 322 22455777888888889999999765
|
|
| >PRK00292 glk glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=244.54 Aligned_cols=277 Identities=14% Similarity=0.015 Sum_probs=181.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHH-cCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgI 100 (370)
.++||+|+|||+++++++|.. .+.++.+.+.++.. .+.+.+.+.+++++ .+ .++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATAD---------YPSLEDAIRAYLADEHG---VQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCC---------CCCHHHHHHHHHHhccC---CCCceEEE
Confidence 379999999999999999951 35567666665432 12245555555554 22 36889999
Q ss_pred eecCCCChh--------hHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcC---------C------CCCeEEEEEccc
Q 017527 101 AVSGVNHPT--------DQQRILNWLRDIFPGNVR-LYVHNDALAALASGTM---------G------KLHGCVLIAGTG 156 (370)
Q Consensus 101 gvpG~~~~~--------~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~---------g------~~~~v~l~~GTG 156 (370)
|+||++++. |.. ..+.|+++|+ +| |+++||+||+++++.. | ..+++++++|||
T Consensus 62 g~pG~vd~~~i~~~n~~w~~-~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG 138 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAF-SIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG 138 (316)
T ss_pred EEeCcccCCEEEecCCCccc-CHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc
Confidence 999997642 222 3688999998 85 9999999999998742 2 267899999999
Q ss_pred ceeeeeccCC---ceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc---c
Q 017527 157 TIAYGFTEDG---RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---V 230 (370)
Q Consensus 157 i~g~gii~dG---~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~---~ 230 (370)
+ |+|+++|| ....+||+||+..+..+.-+.....+ ....-++ .++|.+. |...|.++.. .
T Consensus 139 i-G~giv~~g~~g~~g~agE~GH~~~~~~~~~~~~~~~~---~c~~~~~--------gclE~~~--Sg~~L~~~~~~~~~ 204 (316)
T PRK00292 139 L-GVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQY---LRAEFGH--------VSAERVL--SGPGLVNLYRAICK 204 (316)
T ss_pred c-eEEEEEecCCceEEccCCcccccCCCCChHHHHHHHH---HHHhcCC--------ceeEeee--cHHhHHHHHHHHHh
Confidence 8 66788886 22348999999765543221110000 0000011 0122222 2222222110 0
Q ss_pred CCChHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCccc-CcccccchH
Q 017527 231 DPSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLE-ANRRWDIGR 307 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~~-~~~~~~l~~ 307 (370)
......-....++|+++|++|| +.|++++++++++||..+++++++|| |+ .|||+||++. ..+.+ .+
T Consensus 205 ~~~~~~~~~~~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~--------P~~~vvi~Gg~~~~~~~~~--~~ 274 (316)
T PRK00292 205 ADGREPELLTPADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLG--------ARGGVYIAGGIVPRFLEFF--KA 274 (316)
T ss_pred hcCCCcccCCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEeCchHHhHHhhh--cc
Confidence 0000000014578999999998 99999999999999999999999999 78 9999999985 55554 55
Q ss_pred -HHHHHHHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 308 -EVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 308 -~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+++.+.++.+.+. ..+...++....++++++|||+++
T Consensus 275 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~agl~GAa~~~ 313 (316)
T PRK00292 275 SGFRAAFEDKGRFSA----YLADIPVYVITHPQPGLLGAGAYL 313 (316)
T ss_pred HHHHHHHhcCCChhh----HHhcCCEEEEcCCChHHHHHHHHH
Confidence 67888877443332 122334444556678899999876
|
|
| >PRK13311 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=228.41 Aligned_cols=212 Identities=15% Similarity=0.101 Sum_probs=158.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|+|+++++++|. +|+++.+.+.+++. .+++++++.+.++++++.... ..+.+|||++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~~---~~~~~~~~~i~~~i~~~~~~~----~~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTPR---EDYPQLLQILRDLTEEADTYC----GVQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCCC---cCHHHHHHHHHHHHHHHHhhc----CCCceEEEEe
Confidence 4799999999999999999 89999888877642 257788888888887765422 2346999999
Q ss_pred cCCCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++ | ..+|++.|+++|+ .||+++||+|++++++. +| .++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGi-G~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGV-GGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCe-EEEEEEC
Confidence 9986532 1 2489999999998 89999999999999884 33 4799999999998 6789999
Q ss_pred CceEe-----eCCCCCCcC--CC---------CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc
Q 017527 166 GRDAR-----AAGAGPILG--DW---------GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY 229 (370)
Q Consensus 166 G~l~~-----aGg~G~llg--d~---------Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~ 229 (370)
|++++ +||+||+.. +. +..|.||+.+| +|.+. |...+.+. +
T Consensus 142 G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~Gc--------------------lE~~~--S~~ai~~~-~ 198 (256)
T PRK13311 142 GSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGC--------------------IENYI--SGRGFEWM-Y 198 (256)
T ss_pred CEEecCCCCCCccceeEEeccCcccccccCCCCCcCCCCCccc--------------------hhhee--cHHHHHHH-H
Confidence 99976 788888753 21 22333333332 33332 33333221 1
Q ss_pred cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017527 230 VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLS 278 (370)
Q Consensus 230 ~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~ 278 (370)
.... .. ....+.|++++++||+.|++++++++++||..+++++++|+
T Consensus 199 ~~~~-~~-~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~ 245 (256)
T PRK13311 199 SHFY-QH-TLPATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLG 245 (256)
T ss_pred HHhc-cC-CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0000 00 12457899999999999999999999999999999999999
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=249.87 Aligned_cols=287 Identities=14% Similarity=0.007 Sum_probs=190.4
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
..+++||+||||||++++++|. +|+++.+.+.++... +.+.+++++++++.+. .++.+||
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~ig 75 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAA 75 (638)
T ss_pred CCCCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEE
Confidence 3457999999999999999987 789888877766432 3466677777766543 3589999
Q ss_pred EeecCCCChh--------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhh---------cCC----CCCeEEEEEccc-
Q 017527 100 LAVSGVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG---------TMG----KLHGCVLIAGTG- 156 (370)
Q Consensus 100 IgvpG~~~~~--------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~---------~~g----~~~~v~l~~GTG- 156 (370)
||+||+++.. |..++ +.|++.|+ + ||.++||++|+++++ ++| ..+++++++|||
T Consensus 76 ig~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g--~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGT 152 (638)
T PRK14101 76 IAIANPVDGDQVRMTNHDWSFSI-EATRRALG--FDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGT 152 (638)
T ss_pred EEEecCccCCeeeecCCCcEecH-HHHHHHcC--CCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCc
Confidence 9999997642 33455 88999998 6 589999999999983 233 367888887554
Q ss_pred -ceeeeec-cCCc-eEeeCCCCCCcCCCCchHHHHHHH--HHHH-HHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc
Q 017527 157 -TIAYGFT-EDGR-DARAAGAGPILGDWGSGYGIAAQA--LTAV-IRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV 230 (370)
Q Consensus 157 -i~g~gii-~dG~-l~~aGg~G~llgd~Gs~~~iG~~~--~~~~-~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~ 230 (370)
+++++++ .+|+ +...+|+||+..+....-+..... +... ..+.+...+.+++.+....... ...
T Consensus 153 GlG~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~~~~~~~----------~~~ 222 (638)
T PRK14101 153 GLGVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARKKYPHVSFERVCAGPGMEIIYRALAA----------RDK 222 (638)
T ss_pred cceeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHHhcCcceeeeecchhhHHHHHHHHHh----------hcC
Confidence 5333353 6777 678899999865433211111000 0000 0001111122222221111100 000
Q ss_pred CCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccch-HHH
Q 017527 231 DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIG-REV 309 (370)
Q Consensus 231 ~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~-~~v 309 (370)
..... ...+++|+++|++||+.|++++++++++||..+.++++++|+ |+.||||||++.....+ +. ..|
T Consensus 223 ~~~~~--~~~~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~~-------p~~vvigGGIs~~~~~~-l~~~~f 292 (638)
T PRK14101 223 KRVAA--NVDTAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLGA-------LGGIYIGGGVVPKLGEL-FTRSSF 292 (638)
T ss_pred CCCcC--cCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCcEEEeCcHHHHHHHH-cChHHH
Confidence 00000 124688999999999999999999999999999999999985 79999999998654333 24 367
Q ss_pred HHHHHhhCCCceeeCCCCCcccccccccccccccccceeEeeec
Q 017527 310 VKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALCRIQL 353 (370)
Q Consensus 310 ~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (370)
++.+...-|... -++...+++-.+..++++|||+++.=||
T Consensus 293 ~~~f~~kg~~~~----~~~~ipv~~i~~~~~~l~Gaa~~~~~~~ 332 (638)
T PRK14101 293 RARFEAKGRFEA----YLANIPTYLITAEYPAFLGVSAILAEQL 332 (638)
T ss_pred HHHHHhCCChHH----HHhcCCEEEEeCCChhHHHHHHHHHHHh
Confidence 777766333333 5566777777788888999998776555
|
|
| >TIGR00749 glk glucokinase, proteobacterial type | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=218.56 Aligned_cols=282 Identities=13% Similarity=0.010 Sum_probs=173.3
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCC-ccCcceEEEeec
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS 103 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~-~~~v~~IgIgvp 103 (370)
|.+|+||||++++++|. ++.++.+....++ ...+.+.+.+++++++.+.. ...+.++|||+|
T Consensus 1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~--------~~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG--------LDFPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEec---------CCCceeeeEEEec--------CCCCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 57899999999999997 5665554332111 11355666777776654322 123678999999
Q ss_pred CCCChh--------hHHHHHHHHHhhCCCCc-eEEEeChHHHHHHhh--------c-C----CCCCeEEEEEccccee-e
Q 017527 104 GVNHPT--------DQQRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-M----GKLHGCVLIAGTGTIA-Y 160 (370)
Q Consensus 104 G~~~~~--------~~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~--------~-~----g~~~~v~l~~GTGi~g-~ 160 (370)
|+++.. |..++. .|++.|+ . ||.++||+||+++++ . + +.++++++++|||+++ .
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV 140 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence 986421 335775 8888898 6 699999999999986 3 2 3467888888666533 2
Q ss_pred eecc---CCceEe-eCCCCCCcCCCCchHHHH-HHHHHHH--HHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC
Q 017527 161 GFTE---DGRDAR-AAGAGPILGDWGSGYGIA-AQALTAV--IRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS 233 (370)
Q Consensus 161 gii~---dG~l~~-aGg~G~llgd~Gs~~~iG-~~~~~~~--~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~ 233 (370)
++++ ||+++. +||+||+.......-+.. .+.+... ..+.+...+.+.+.+.......... .. . .....
T Consensus 141 ~~vi~~~~g~l~~~agE~GH~~~~~~~~~~~~~~~~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~~~~-~~--~--~~~~~ 215 (316)
T TIGR00749 141 AHLIHQVDGRWVVLPGEGGHVDFAPNSELEAIILEYLRAKIGHVSAERVLSGPGLVNIYEALVKADP-ER--Q--FNKLP 215 (316)
T ss_pred eEEEEcCCCCEEECCCCcccccCCCCCHHHHHHHHHHHHhcCCceeeeeecHHHHHHHHHHHHhhcC-cc--c--ccccc
Confidence 2355 899865 999999865332210000 0000000 0011222223333332222211000 00 0 00000
Q ss_pred hHHHhhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcc-cCcccccchHHHH
Q 017527 234 WARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVL-EANRRWDIGREVV 310 (370)
Q Consensus 234 ~~~~a~~~~~v~~~A~~GD-~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~-~~~~~~~l~~~v~ 310 (370)
.. ...+++|+++|.+|| +.|++++++++++||..+.+++++|| |+ -|+++||++ +..+.+ ..+.++
T Consensus 216 ~~--~~~~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ld--------peggv~v~GG~~~~~~~~~-~~~~f~ 284 (316)
T TIGR00749 216 QE--NLKPKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLG--------TRGGVYIAGGIVPRFIEFF-KASGFR 284 (316)
T ss_pred cc--cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCcEEEECcHHHhHHhhh-CchHHH
Confidence 00 124688999999997 99999999999999999999999999 67 666666665 444444 222677
Q ss_pred HHHHhhCCCceeeCCCCCcccccccccccccccccc
Q 017527 311 KCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGA 346 (370)
Q Consensus 311 ~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 346 (370)
+.+.+.- ++.+-++...++.-.+.+.+++|||
T Consensus 285 ~~~~~~~----~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 285 AAFEDKG----RMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HHHhccC----ChhHHHhhCCEEEEcCCCccccCCC
Confidence 7775522 2333556777777778888899885
|
This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models. |
| >PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames [] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=167.45 Aligned_cols=146 Identities=19% Similarity=0.213 Sum_probs=120.4
Q ss_pred EEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCC
Q 017527 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (370)
Q Consensus 26 GVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~ 105 (370)
|||+|+|+++++++|. +|+++.+.+.+.+ .+++++++.+.+.+++++.+.+.. +|||++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999999 8999999887765 268999999999999999887542 999999999
Q ss_pred CChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccCCce
Q 017527 106 NHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 106 ~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
+++.. ..+|.+.|++.|+ +||+++||++++++++. + +.++++++.+|||+ |++++.||++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i 139 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI 139 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence 65432 2479999999998 89999999999999874 2 34799999999998 7789999999
Q ss_pred Ee-----eCCCCCCcCCC-CchHHHHHHHH
Q 017527 169 AR-----AAGAGPILGDW-GSGYGIAAQAL 192 (370)
Q Consensus 169 ~~-----aGg~G~llgd~-Gs~~~iG~~~~ 192 (370)
++ +|++||+..++ +-.|.||+.+|
T Consensus 140 ~~G~~~~aGeigh~~~~~~~~~c~cG~~GC 169 (179)
T PF00480_consen 140 YRGSNGFAGEIGHMPVDPNGEPCYCGNRGC 169 (179)
T ss_dssp ETTTTS-TTGGGGSBSSTTSSB-TTSSBSB
T ss_pred ccCCCccccceeeeeccCCCCcCCCCCcCc
Confidence 75 78899887654 34455555433
|
This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A .... |
| >TIGR02707 butyr_kinase butyrate kinase | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-17 Score=159.69 Aligned_cols=251 Identities=20% Similarity=0.197 Sum_probs=165.4
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHH---HHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~---~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+|.|..|+|+|++++++. +++++.+....+.... .+.+.+.+++. +.|.+++++.++..+++.+| .
T Consensus 2 il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av-~ 70 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV-V 70 (351)
T ss_pred EEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-E
Confidence 789999999999999998 7888877666552222 24557788888 88999999888777789999 7
Q ss_pred eecCCCChhh--------------------------HHHHHHHHHhhCCCCceEEEeCh---------HHHHHHhhc---
Q 017527 101 AVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT--- 142 (370)
Q Consensus 101 gvpG~~~~~~--------------------------~~~l~~~L~~~f~~~~pV~V~ND---------a~aa~~g~~--- 142 (370)
+-||++++.. ...+...+.+.++ +|.+|.|+ +++.++.++
T Consensus 71 ~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~Rr 148 (351)
T TIGR02707 71 GRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIERK 148 (351)
T ss_pred ECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhhh
Confidence 7888755321 1134445555665 89899999 665544221
Q ss_pred ------------------CCC----CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCch--HHHHHHHHH
Q 017527 143 ------------------MGK----LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSG--YGIAAQALT 193 (370)
Q Consensus 143 ------------------~g~----~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~--~~iG~~~~~ 193 (370)
.|. .+++++++|||+ |.+++.||+++. +||.+++.-..|.- ....+
T Consensus 149 ygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGi-g~~ai~~Gk~vdgs~G~agEg~~~~tr~G~id~~~~~~---- 223 (351)
T TIGR02707 149 SIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGI-SVAAHRKGRVIDVNNALDGEGPFSPERSGTLPLGDLVD---- 223 (351)
T ss_pred hchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCc-eeeeEECCEEEEcCCCCCCcCCcccCccCCCCchhHHH----
Confidence 222 389999999998 567889999964 44433432111110 00001
Q ss_pred HHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 017527 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAV 273 (370)
Q Consensus 194 ~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~v 273 (370)
.+.++..+ . ..+.+.+...+ .+... . . ....++|++++++||+.|+.++++++.+|++.|+++
T Consensus 224 ---~~~~~~~s--~--~el~~~l~~~s--Gl~~~-~------g-s~d~reI~~~a~~GD~~A~~a~d~~~~~la~~Ia~l 286 (351)
T TIGR02707 224 ---LCYSGKYT--K--EEMKKKIVGNG--GLVAY-L------G-TNDAREVEKRIEAGDEKAKLILDAMAYQIAKEIGKM 286 (351)
T ss_pred ---HHhcCCCC--H--HHHHHHHHhcc--Ccccc-c------C-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01111110 0 11111221111 11111 0 0 124688999999999999999999999999999999
Q ss_pred HHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 274 VQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 274 v~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
++.|++ +|+.||+|||+++. +.+ ++.+++.++...|
T Consensus 287 ~~~l~g------~pD~IV~gGGI~e~-~~l--~~~I~~~l~~~a~ 322 (351)
T TIGR02707 287 AVVLKG------KVDAIVLTGGLAYS-KYF--VSEIIKRVSFIAP 322 (351)
T ss_pred HHHhCC------CCCEEEEcchhhcC-HHH--HHHHHHHHHhhCC
Confidence 999931 27999999999974 555 7999999988433
|
This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism. |
| >PTZ00288 glucokinase 1; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-18 Score=170.65 Aligned_cols=307 Identities=14% Similarity=0.029 Sum_probs=174.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|++++|||||++|+++++..++.+ +.........+.+. .+..+.++.+.++++++.+... .-+.+...+|
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~i 96 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFAREVQHDD----SGVHIIYVRFNVTK---TDIRELLEFFDEVLQKLKKNLS-FIQRVAAGAI 96 (405)
T ss_pred CCeEEEEEecCCceEEEEEeccCCCC----CceeEEEEeccccc---ccHHHHHHHHHHHHHHHHhcCc-cccCcCeEEE
Confidence 35899999999999999998621111 12222332222011 2466777777777777665432 1146777899
Q ss_pred eecCCCChhhH-------H---HHHHHHHhhCCCCceEEEeChHHHHHHhhc----------------------------
Q 017527 101 AVSGVNHPTDQ-------Q---RILNWLRDIFPGNVRLYVHNDALAALASGT---------------------------- 142 (370)
Q Consensus 101 gvpG~~~~~~~-------~---~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~---------------------------- 142 (370)
++||++....- . .+-+.--..|+. .++.+.||-.|.++|-.
T Consensus 97 AvAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~ 175 (405)
T PTZ00288 97 SVPGPVTGGQLAGPFNNLKGIARLTDYPVELFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGK 175 (405)
T ss_pred EEeCceeCCEeeccccccccccccCCCCchhcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCC
Confidence 99999642211 0 111110112763 47999999998766421
Q ss_pred -----CCCCCeEEEEEcccceeeeeccCCce-----EeeCCCCCCcCC--CCchHHHHHHHHHHHHHHHcCCCCCchhHH
Q 017527 143 -----MGKLHGCVLIAGTGTIAYGFTEDGRD-----ARAAGAGPILGD--WGSGYGIAAQALTAVIRAYDGRGPDTMLTS 210 (370)
Q Consensus 143 -----~g~~~~v~l~~GTGi~g~gii~dG~l-----~~aGg~G~llgd--~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~ 210 (370)
.+..+.+++++|||++ .++++++++ ..+||.||+..+ .+..++++...+....+.....+..+. ..
T Consensus 176 ~~g~~~~~~~~~Vlg~GTGLG-~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~-~~ 253 (405)
T PTZ00288 176 PAGSVIGRGRCMVLAPGTGLG-SSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDST-VY 253 (405)
T ss_pred CCcccCCCCCEEEEEecccee-EEEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhhcccccccc-Cc
Confidence 0224568999999995 467777774 458999998663 334445655544332221100000000 00
Q ss_pred HHHHHcCCCChhhHHHHh--ccCC-ChHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Q 017527 211 NILSTLELSSPDELIGWT--YVDP-SWARIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKH 286 (370)
Q Consensus 211 ~~~~~~~~~s~~~l~~~~--~~~~-~~~~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~ 286 (370)
-..|.+. |...|...+ .... ....-.....+++++|. +||+.|.+++++++++||+.+.+++..++
T Consensus 254 vs~E~v~--SG~GL~~ly~~l~~~~~~~~~~~~~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~-------- 323 (405)
T PTZ00288 254 PIYEDIV--SGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFL-------- 323 (405)
T ss_pred eeEeEEe--cHHHHHHHHHHHhccCCCccCcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------
Confidence 0011111 222222111 0000 00000113467888887 58999999999999999999999999999
Q ss_pred CccEEEEcCcccCcccccchH-HHHHHHHhhCCCce-eeCCCCCcccccc-cccccccccccceeE
Q 017527 287 SFPLVMVGGVLEANRRWDIGR-EVVKCILRDYPGAV-PIRPKVCIWPHWH-SCDQASANCCGAALC 349 (370)
Q Consensus 287 P~~VVlgGgv~~~~~~~~l~~-~v~~~l~~~~p~~~-~~~p~~~~~~~~~-~~~~~~~~~~~~~~~ 349 (370)
|+.|||+||+......+ +.+ .+.+.++..+-..+ -+.+-++.+.++. ..+.+.+++|||..+
T Consensus 324 P~~VvIgGGi~~~~~~~-l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a 388 (405)
T PTZ00288 324 PLTVVLMGDNIVYNSFF-FDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFG 388 (405)
T ss_pred CCEEEEECccHHhhHHH-HhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHH
Confidence 78899988776554444 222 22223333211111 0133555666655 566778899998876
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=149.26 Aligned_cols=265 Identities=17% Similarity=0.158 Sum_probs=162.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHH---HHHHHHHHHHHcCCCccCcceEE
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET---IEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~---l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
.+|.|.-|.|+|++++++. .+.+.+....-+...-.....+.++ =.+.|.++++++++..+++.+|
T Consensus 3 ~il~inpgststk~a~~~~----------~~~~~~~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av- 71 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED----------EKPIFEETLRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDLSELDAV- 71 (358)
T ss_pred EEEEEcCCCchheEEEEcC----------CceeeeeccccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCChhcceEE-
Confidence 5899999999999999987 3434333221100000000011122 2356667777888877889988
Q ss_pred EeecCCCChh--h------------------------HHHHHHHHHhhCCCCceEEEeCh--------------------
Q 017527 100 LAVSGVNHPT--D------------------------QQRILNWLRDIFPGNVRLYVHND-------------------- 133 (370)
Q Consensus 100 IgvpG~~~~~--~------------------------~~~l~~~L~~~f~~~~pV~V~ND-------------------- 133 (370)
++-+|+.+|- . ...+...+.+.++ +|++|.|+
T Consensus 72 ~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~i~R 149 (358)
T PRK03011 72 VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPEIER 149 (358)
T ss_pred EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCCcce
Confidence 7887775531 0 0124455555666 89999999
Q ss_pred ------HHHHHHhh----cCC----CCCeEEEEEcccceeeeeccCCceEe-----eCC-------CCCCcCCCCchHHH
Q 017527 134 ------ALAALASG----TMG----KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAG-------AGPILGDWGSGYGI 187 (370)
Q Consensus 134 ------a~aa~~g~----~~g----~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg-------~G~llgd~Gs~~~i 187 (370)
.|..+.+. ..| ..++|++++|||+ |.+++.||++++ +|| +||+.. ..+
T Consensus 150 ~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~idgs~g~agEG~~~~~R~G~l~~-----~~~ 223 (358)
T PRK03011 150 KSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVIDVNNALDGEGPFSPERAGGLPV-----GDL 223 (358)
T ss_pred eecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEecCCccCCCCCcccCcccCcCc-----HHH
Confidence 45433332 123 3589999999998 667889999976 333 333211 000
Q ss_pred HHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 017527 188 AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267 (370)
Q Consensus 188 G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg 267 (370)
+. .+..+..+... +.+.+...+ .+... . . ....++|++++++||+.|..++++++.+|+
T Consensus 224 ~~-------~~~~g~~s~~~----l~~~l~~~~--Gl~~~-~------g-s~d~reV~~~a~~GD~~A~~ald~~~~~la 282 (358)
T PRK03011 224 VE-------LCFSGKYTKEE----LKKKLVGKG--GLVAY-L------G-TNDAREVEKRIEEGDEKAKLVYEAMAYQIA 282 (358)
T ss_pred HH-------HHhcCCCCHHH----HHHHHHhcc--Ccccc-c------C-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 11 01111111111 111111001 11100 0 0 124688999999999999999999999999
Q ss_pred HHHHHHHHHh--ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccc
Q 017527 268 LSVKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCC 344 (370)
Q Consensus 268 ~~l~~vv~~l--~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~ 344 (370)
+.|.++++.| | |+.||++||++. .+.+ ++.+++.++...| ..+..++++. +...|
T Consensus 283 k~I~~l~~~L~gd--------pD~IVlgGGI~~-~~~l--~~~I~~~l~~~~p-----------v~i~p~~~e~~A~a~G 340 (358)
T PRK03011 283 KEIGAMAAVLKGK--------VDAIVLTGGLAY-SKRL--VERIKERVSFIAP-----------VIVYPGEDEMEALAEG 340 (358)
T ss_pred HHHHHHHHHhCCC--------CCEEEEeCcccc-CHHH--HHHHHHHHHhhCC-----------eEEEeCCCHHHHHHHH
Confidence 9999999999 5 899999999998 5554 8899999986422 3344555553 44566
Q ss_pred cceeE
Q 017527 345 GAALC 349 (370)
Q Consensus 345 ~~~~~ 349 (370)
|+.+-
T Consensus 341 A~rvl 345 (358)
T PRK03011 341 ALRVL 345 (358)
T ss_pred HHHHH
Confidence 66553
|
|
| >PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-14 Score=135.87 Aligned_cols=281 Identities=16% Similarity=0.037 Sum_probs=160.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCC--eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|.-||||||+|+++++.. .+. ++...+.++.+.. .+.+++++++++......++..++|++
T Consensus 1 Lv~DIGGTn~Rlal~~~~--------~~~~~~~~~~~~~~~~~~---------s~~~~l~~~l~~~~~~~~~p~~~~iav 63 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPD--------GGPLQLIDIRRYPSADFP---------SFEDALADYLAELDAGGPEPDSACIAV 63 (316)
T ss_dssp EEEEEETTEEEEEEEECT--------CGG-EEEEEEEEEGCCCC---------HHHHHHHHHHHHTCHHHTCEEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcC--------CCCccccccEEEecCCcC---------CHHHHHHHHHHhcccCCCccceEEEEE
Confidence 467999999999999871 233 4666666665543 245555666664332334677899999
Q ss_pred cCCCChhh-------HHHHHHHHHhhCCCCceEEEeChHHHHHHhh-------c--------CCCCCeEEEEEcccceee
Q 017527 103 SGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG-------T--------MGKLHGCVLIAGTGTIAY 160 (370)
Q Consensus 103 pG~~~~~~-------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-------~--------~g~~~~v~l~~GTGi~g~ 160 (370)
+|+++... |.-=.+.|++.|+. .+|.+.||-.+.+++- . ......+++..|||.+.+
T Consensus 64 AGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a 142 (316)
T PF02685_consen 64 AGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVA 142 (316)
T ss_dssp SS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEE
T ss_pred ecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEE
Confidence 99964321 11125667778873 3799999999876641 0 112456789999999776
Q ss_pred eeccCCce--EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHH---HhccCCChH
Q 017527 161 GFTEDGRD--ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIG---WTYVDPSWA 235 (370)
Q Consensus 161 gii~dG~l--~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~---~~~~~~~~~ 235 (370)
.++.++.- .-.+|.||+--..-...+.- +...++..-++. . .|.+ -|...|.. .........
T Consensus 143 ~l~~~~~~~~v~~sEgGH~~fap~~~~e~~---l~~~l~~~~~~v---s-----~E~v--lSG~GL~~ly~~l~~~~~~~ 209 (316)
T PF02685_consen 143 LLVPDGDGYYVLPSEGGHVDFAPRTDEEAE---LLRFLRRRYGRV---S-----VERV--LSGRGLENLYRFLAGERGAE 209 (316)
T ss_dssp EEEEETTEEEEEEE-GGGSB---SSHHHHH---HHHHHHHHCTS----B-----HHHC--SSHHHHHHHHHHHHCCTT--
T ss_pred EEEecCCceEeCCCccccccCCCCCHHHHH---HHHHHHHhcCCc---e-----eEee--cchhhHHHHHHHHHhccCCC
Confidence 66655533 45789999743333222211 111122221211 0 1111 12222222 111111000
Q ss_pred HHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH--HHHHH
Q 017527 236 RIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR--EVVKC 312 (370)
Q Consensus 236 ~~a~~~~~v~~~A~-~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~--~v~~~ 312 (370)
.-...+++|.++|. .+|+.|++.++.+...||+...+++-.+.+ -.-|+|+||++.....+ ++ .|++.
T Consensus 210 ~~~~~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a-------~gGvyiaGGI~~~~~~~--l~~~~F~~~ 280 (316)
T PF02685_consen 210 PPLLSAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFLA-------RGGVYIAGGIAPRLLPL--LDESAFREA 280 (316)
T ss_dssp S----HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT--------TCEEEEE-TTGGGGHHH--HHCSSHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CeeEEEecchhhHHHHH--cChhHHHHH
Confidence 00134678888886 568999999999999999999999999984 23599999999876555 33 46666
Q ss_pred HHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 313 ILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 313 l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
+...-+ +.+-++...+++-.+.+.+++|||+.+
T Consensus 281 F~~kg~----~~~~l~~iPv~li~~~~~gL~Gaa~~a 313 (316)
T PF02685_consen 281 FEDKGR----MSDLLEDIPVYLITDPDAGLLGAAAYA 313 (316)
T ss_dssp HH--GG----GHHHHTT--EEEE--S-HHHHHHHHHH
T ss_pred HhccCC----cHHHHhcCcEEEEeCCCHHHHHHHHHH
Confidence 644222 233555666666667778899998764
|
7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B. |
| >COG0837 Glk Glucokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-10 Score=106.93 Aligned_cols=288 Identities=17% Similarity=0.074 Sum_probs=164.7
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|....|.-||||||.|++++... .+++....+..|.+. .+|+++|++++.+. ....+...+
T Consensus 4 ~~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dy---------psle~av~~yl~~~--~~~~~~~a~ 64 (320)
T COG0837 4 MGYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADY---------PSLEEAVQDYLSEH--TAVAPRSAC 64 (320)
T ss_pred CCCceEEEecCCcceEEEEeccC--------CCCccccceecccCc---------CCHHHHHHHHHHHh--hccCccceE
Confidence 33445555999999999998652 233333334444433 23556666677665 224567789
Q ss_pred EeecCCCChhh-------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc---------CC------CCCeEEEEEcccc
Q 017527 100 LAVSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASGT---------MG------KLHGCVLIAGTGT 157 (370)
Q Consensus 100 IgvpG~~~~~~-------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~---------~g------~~~~v~l~~GTGi 157 (370)
++++|+++.++ |.-=.+++++.++. ..|.+.||-.+-+++-. .| ...-+++--|||.
T Consensus 65 ~AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGL 143 (320)
T COG0837 65 FAIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGL 143 (320)
T ss_pred EEEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCc
Confidence 99999976432 22224566677774 57999999988655410 11 1456788899999
Q ss_pred eeeeeccCCceE--eeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChH
Q 017527 158 IAYGFTEDGRDA--RAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWA 235 (370)
Q Consensus 158 ~g~gii~dG~l~--~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (370)
+.++++..+.-. -.||=||+--...+.-++ .++..++...|+.+. ++.++-.....+.+...+.....
T Consensus 144 GVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~---~i~~~l~~~~GrVS~-------Er~LSG~GL~~iY~al~~~~~~~ 213 (320)
T COG0837 144 GVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF---QILEYLRARFGRVSA-------ERVLSGPGLVNLYRALCAADGRL 213 (320)
T ss_pred ceEEEEecCCeeEeccCCCccccCCCCCHHHH---HHHHHHHHhcCccch-------hhhcccccHHHHHHHHHHhhCCC
Confidence 888887765533 378888853333333332 122333333444321 01110000001111100000000
Q ss_pred HHhhhHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 236 RIAALVPVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 236 ~~a~~~~~v~~~A~~-GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
....+..+|.++|.+ +|+.|.+.++-++.+||....+++-+|.. ---|.|.||+....-.++....|++.+.
T Consensus 214 ~~~~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lga-------rGGVyiaGGI~pril~~l~~s~Fr~~Fe 286 (320)
T COG0837 214 PEDLTPAAITERALAGGDALARETLSLFCAILGRVAGDLALTLGA-------RGGVYIAGGIVPRILEALKASGFRARFE 286 (320)
T ss_pred cccCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhc-------cCcEEEcCCchHhHHHHHhcchHHHHhh
Confidence 001123578888888 79999999999999999999999999985 4589999999875433312334555555
Q ss_pred hhCCCceeeCCCCCccccccccccccccccccee
Q 017527 315 RDYPGAVPIRPKVCIWPHWHSCDQASANCCGAAL 348 (370)
Q Consensus 315 ~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 348 (370)
..-|-.- -+...-.++-.+...+++|||+-
T Consensus 287 dKGr~sa----~l~~IPV~vi~~~~~gL~Gaa~~ 316 (320)
T COG0837 287 DKGRMSA----YLADIPVYVILHPQPGLLGAAAA 316 (320)
T ss_pred hcCchHH----HHhhCCEEEEecCCchHHHHHHH
Confidence 4333222 22233333334444558887653
|
|
| >smart00732 YqgFc Likely ribonuclease with RNase H fold | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.8e-11 Score=94.95 Aligned_cols=92 Identities=12% Similarity=0.174 Sum_probs=70.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+||+|+|+|+++++++|. +|+++.....++.. +.+..++.|.+++++ . ++.+||||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~~----~~~~~~~~l~~~i~~----~-----~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPRT----NKEADAARLKKLIKK----Y-----QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEec----CcchHHHHHHHHHHH----h-----CCCEEEEeC
Confidence 4799999999999999998 79998776654421 234455555555544 2 467999999
Q ss_pred cCCCCh----hhHHHHHHHHHhhCCCCceEEEeChHHHHH
Q 017527 103 SGVNHP----TDQQRILNWLRDIFPGNVRLYVHNDALAAL 138 (370)
Q Consensus 103 pG~~~~----~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~ 138 (370)
||.++. .+..+|+++|++.++ +||+++||+++..
T Consensus 60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~ 97 (99)
T smart00732 60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATV 97 (99)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCcccc
Confidence 998643 234789999999998 8999999998753
|
YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions. |
| >PLN02914 hexokinase | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-08 Score=102.30 Aligned_cols=297 Identities=16% Similarity=0.108 Sum_probs=162.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeEE--EEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCC----
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA--RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGS---- 90 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il~--~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~---- 90 (370)
.+.++++|+|||+.|+.++.+ .| .+.. +...+ +......+.+++++-|.+.|.+++++...
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~ 164 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQL---------GGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHL 164 (490)
T ss_pred eeEEEEEecCCceEEEEEEEe---------cCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccC
Confidence 468999999999999999998 33 1222 11222 22222235789999999999999987642
Q ss_pred CccCcceEEEeecCCCCh---------hh----------H----HHHHHHHHhh-CCCCceEEEeChHHHHHHhhcC-CC
Q 017527 91 NRSAVRAVCLAVSGVNHP---------TD----------Q----QRILNWLRDI-FPGNVRLYVHNDALAALASGTM-GK 145 (370)
Q Consensus 91 ~~~~v~~IgIgvpG~~~~---------~~----------~----~~l~~~L~~~-f~~~~pV~V~NDa~aa~~g~~~-g~ 145 (370)
+..+...+|+..+=+... .| + ..|.+.|+++ ++ -..+.|.||+.+.++++.+ ..
T Consensus 165 ~~~~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~-v~v~AivNDTVGTL~a~aY~~~ 243 (490)
T PLN02914 165 PEGRKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLD-MRVSALVNDTVGTLAGARYWDD 243 (490)
T ss_pred CccccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHHHHHhhhcCCC
Confidence 111233455555444321 01 1 2345555443 22 1356789999999887654 33
Q ss_pred CCeEEEEEcccceeeeecc-------------CCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC-----
Q 017527 146 LHGCVLIAGTGTIAYGFTE-------------DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD----- 205 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~-------------dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~----- 205 (370)
...+.+|+|||++++-+-. +++..-.=|||.+ ++... .+..-...|... |.
T Consensus 244 ~~~iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~lp--------~T~~D~~lD~~S~nPG~Q~fE 314 (490)
T PLN02914 244 DVMVAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAF-SDGLP--------LTEFDREMDAASINPGEQIFE 314 (490)
T ss_pred CceEEEEEECCeeeEEEeecccccccccCCCCCceEEEecccccc-CCCCC--------CChHHHHHhhCCCCCCcchhh
Confidence 4578899999999875432 1222334567754 22110 011111112110 00
Q ss_pred --------chhHHHHHHHc-------------------CCCChhhHHHHhccCCChHHHhhhHHHHHHHH-hc----CC-
Q 017527 206 --------TMLTSNILSTL-------------------ELSSPDELIGWTYVDPSWARIAALVPVVVSCA-EA----GD- 252 (370)
Q Consensus 206 --------~~l~~~~~~~~-------------------~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A-~~----GD- 252 (370)
..+.+.++..+ .+.+ ..+.....+.. .++. .+..+++.. .- .|
T Consensus 315 KmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T--~~ls~i~~D~s-~~l~-~~~~~l~~~~~~~~~~~d~ 390 (490)
T PLN02914 315 KTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRT--PHLCAMQQDNS-DDLQ-AVGSILYDVLGVEASLSAR 390 (490)
T ss_pred hHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCcccc--HHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCHHHH
Confidence 01112111111 1111 11111111110 0110 111222110 00 11
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC
Q 017527 253 ----EVANKILQDSVEELALSVKAVVQRLSLSGE--DGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK 326 (370)
Q Consensus 253 ----~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~--~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~ 326 (370)
..|..+.+|+++..|-+|+.+++..+..+. ....+..|-+-||+.+.++.| .+.+++.+.+.++ .. .
T Consensus 391 ~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f--~~~l~~~l~ellg-~~----~ 463 (490)
T PLN02914 391 RRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQY--RRYMQDAVTELLG-LE----L 463 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccH--HHHHHHHHHHHhC-cc----c
Confidence 467778899999999999999998763110 011246899999999999998 9999999988552 11 2
Q ss_pred CCcccccccccccccccccceeE
Q 017527 327 VCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
-+...+..++++- -.|||-++
T Consensus 464 ~~~i~i~~a~DGS--GvGAAl~A 484 (490)
T PLN02914 464 SKNIAIEHTKDGS--GIGAALLA 484 (490)
T ss_pred CCcEEEEEccCch--HHHHHHHH
Confidence 2245666666665 67776544
|
|
| >PTZ00107 hexokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-08 Score=99.32 Aligned_cols=294 Identities=14% Similarity=0.096 Sum_probs=157.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--e-EEEEEecCC-Cccc---------cCHHHHHHHHHHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--V-LARAAAGCS-NHNS---------VGEDAARETIEKVMADALLK 87 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--i-l~~~~~~~~-n~~~---------~~~~~~~~~l~~~i~~~l~~ 87 (370)
.+.++++|+|||+.|+.++.+ .|. + +.+....-+ .... .+.+++++.|.+.|.+++++
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~ 143 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSL---------RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE 143 (464)
T ss_pred cceEEEEecCCceEEEEEEEe---------CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence 568999999999999999998 332 1 111111111 1111 15779999999999999987
Q ss_pred cCC--CccCcceEEEeecCCCC----------------------------hhhHHHHHHHHHhh-CCCCceEEEeChHHH
Q 017527 88 SGS--NRSAVRAVCLAVSGVNH----------------------------PTDQQRILNWLRDI-FPGNVRLYVHNDALA 136 (370)
Q Consensus 88 ~~~--~~~~v~~IgIgvpG~~~----------------------------~~~~~~l~~~L~~~-f~~~~pV~V~NDa~a 136 (370)
... +..+..-+|+..+=+.. .+-...|.+.|+++ ++ -..+.|.||+.+
T Consensus 144 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~-v~v~AivNDTVg 222 (464)
T PTZ00107 144 NGDPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVP-ANVVAVLNDTVG 222 (464)
T ss_pred ccccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCC-ceEEEEEEcCHH
Confidence 651 11122233333333321 11112344444443 22 136779999999
Q ss_pred HHHhhcC-C----CCCeEEEEEcccceeeeeccC------CceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--
Q 017527 137 ALASGTM-G----KLHGCVLIAGTGTIAYGFTED------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG-- 203 (370)
Q Consensus 137 a~~g~~~-g----~~~~v~l~~GTGi~g~gii~d------G~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~-- 203 (370)
.++++.+ . ....+.+|+|||++++-+... ....-.=|||.+ ++. +-. +..-...|...
T Consensus 223 TL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~~~~~~~iINtEwG~F-~~~-----lp~---T~~D~~lD~~S~n 293 (464)
T PTZ00107 223 TLISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSAYGYAGTPINMECGNF-DSK-----LPI---TPYDLEMDWYTPN 293 (464)
T ss_pred HHHHHHhcCcCCCCCceEEEEEeccccceeeehhhccCCCCcEEEEeecccc-CCC-----CCC---ChHHHHHhhcCCC
Confidence 9887753 2 345678999999998755421 112223567754 321 101 11111122111
Q ss_pred C----------C---chhHHHHH-HHcCCCChhhH----------HHHhccCCChHHHhhhHHHHHHH----------Hh
Q 017527 204 P----------D---TMLTSNIL-STLELSSPDEL----------IGWTYVDPSWARIAALVPVVVSC----------AE 249 (370)
Q Consensus 204 ~----------~---~~l~~~~~-~~~~~~s~~~l----------~~~~~~~~~~~~~a~~~~~v~~~----------A~ 249 (370)
+ . ..+.+.++ +.+....+..+ +.....+.. ..+. .+..++.. +.
T Consensus 294 pg~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~~~~~l~~~~~~~t~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~d~~ 371 (464)
T PTZ00107 294 RGRQQFEKMISGAYLGEISRRLIVHLLQLKAPPKMWQSGSFESEDASMILNDQS-PDLQ-FSRQVIKEAWDVDLTDEDLY 371 (464)
T ss_pred CCcCchhhHHhhhhHHHHHHHHHHHHHhcCCchhhcCCcccccHHHHhhhcCCC-chHH-HHHHHHHHhcCCCCCHHHHH
Confidence 0 0 11222222 22211111111 111111100 0100 11111111 00
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCc
Q 017527 250 AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCI 329 (370)
Q Consensus 250 ~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~ 329 (370)
.=-..|..+.+|+++..|-+|+.+++..+. ...+-.|-+-||+.+.++.| .+.+++.+++... |.-..
T Consensus 372 ~lr~i~~~V~~RAA~L~Aa~iaail~k~~~----~~~~~~VgvDGSv~~~~p~f--~~~~~~~l~~ll~------~~~~~ 439 (464)
T PTZ00107 372 TIRKICELVRGRAAQLAAAFIAAPAKKTRT----VQGKATVAIDGSVYVKNPWF--RRLLQEYINSILG------PDAGN 439 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCceEEEEeCcceecCccH--HHHHHHHHHHHhC------CCCCc
Confidence 001457779999999999999999998872 12357899999999999998 9999999988542 12223
Q ss_pred ccccccccccccccccceeE
Q 017527 330 WPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~ 349 (370)
..+..++++- -.|||-++
T Consensus 440 v~l~~a~DGS--g~GAAl~A 457 (464)
T PTZ00107 440 VVFYLADDGS--GKGAAIIA 457 (464)
T ss_pred EEEEEccCch--HHHHHHHH
Confidence 4455555554 67775443
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-08 Score=98.19 Aligned_cols=84 Identities=17% Similarity=0.144 Sum_probs=67.3
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG 319 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~ 319 (370)
..++++++|.+||+.|+++|++++++|+..++++++.+| |+.||||||++...++ ++.+.+++.+.. +
T Consensus 225 ~~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llD--------Pe~IVLGGGVS~~~e~-~L~~~I~e~l~~--~- 292 (326)
T PRK00976 225 TKEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNP--------EDNVVLAGSVGEMDEP-DVSERIKELLDK--K- 292 (326)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEcCccccCchh-HHHHHHHHHhcc--c-
Confidence 467899999999999999999999999999999999999 7999999999987644 235555555433 1
Q ss_pred ceeeCCCCCccccccccc-ccccccccceeE
Q 017527 320 AVPIRPKVCIWPHWHSCD-QASANCCGAALC 349 (370)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~ 349 (370)
.+.+ ++++++|||.++
T Consensus 293 --------------~a~LG~dAGaiGAA~iA 309 (326)
T PRK00976 293 --------------VLVLGKESAAIGLALIA 309 (326)
T ss_pred --------------ccccCCchHHHHHHHHH
Confidence 1222 347799999987
|
|
| >PLN02405 hexokinase | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.9e-08 Score=98.35 Aligned_cols=301 Identities=18% Similarity=0.118 Sum_probs=161.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeEE---EEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCC---
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVLA---RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN--- 91 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il~---~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~--- 91 (370)
.+.++++|+|||+.|+.++.+ .| .++. +....+......+.+++++-|.+.|.+++++.+..
T Consensus 94 ~G~flAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~ 164 (497)
T PLN02405 94 KGLFYALDLGGTNFRVLRVLL---------GGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHL 164 (497)
T ss_pred ceeEEEEecCCceEEEEEEEE---------cCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhccccccc
Confidence 568999999999999999998 33 2222 11222333333467899999999999999876522
Q ss_pred -ccCcceEEEeecCCCChh---------h----------HHHHHHHHHhhC---CCC-ceEEEeChHHHHHHhhcC-CCC
Q 017527 92 -RSAVRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF---PGN-VRLYVHNDALAALASGTM-GKL 146 (370)
Q Consensus 92 -~~~v~~IgIgvpG~~~~~---------~----------~~~l~~~L~~~f---~~~-~pV~V~NDa~aa~~g~~~-g~~ 146 (370)
..+..-+|+..+=+.+.. | +.++.+.|++.+ +.+ ..+.|.||+.+.++++.+ ...
T Consensus 165 ~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~~ 244 (497)
T PLN02405 165 PPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNPD 244 (497)
T ss_pred CcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCCC
Confidence 112344555555443211 1 123444444432 211 357799999999887754 334
Q ss_pred CeEEEEEcccceeeeecc-------------CCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC------
Q 017527 147 HGCVLIAGTGTIAYGFTE-------------DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD------ 205 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~-------------dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~------ 205 (370)
..+.+|+|||++++.+-. +++..-.=|||.+ +.. +...+..-...|... |.
T Consensus 245 ~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~fEK 316 (497)
T PLN02405 245 VVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNF-RSS-------HLPLTEYDHALDVESLNPGEQIFEK 316 (497)
T ss_pred ceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccC-CCC-------CCCCchHHHHHhhcCCCCCcchhhH
Confidence 568899999999875431 1122233567643 110 000111111122110 00
Q ss_pred -------chhHHHHHHHc-------CCCChhh----------HHHHhccCCChHHHhhhHHHHHHHH-h-c-C---C---
Q 017527 206 -------TMLTSNILSTL-------ELSSPDE----------LIGWTYVDPSWARIAALVPVVVSCA-E-A-G---D--- 252 (370)
Q Consensus 206 -------~~l~~~~~~~~-------~~~s~~~----------l~~~~~~~~~~~~~a~~~~~v~~~A-~-~-G---D--- 252 (370)
..+.+.++..+ +-..+.. .+.....+.. .++. .+..++... . . - |
T Consensus 317 miSG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s-~~l~-~~~~~l~~~l~~~~~~~~~~~~ 394 (497)
T PLN02405 317 IISGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTS-PDLK-VVGSKLKDILEIPNTSLKMRKV 394 (497)
T ss_pred HHhhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCC-chHH-HHHHHHHHHcCCCCCCHHHHHH
Confidence 01111111111 0000000 1111111110 0110 011111110 0 0 0 1
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCC
Q 017527 253 --EVANKILQDSVEELALSVKAVVQRLSLSGEDG--KHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVC 328 (370)
Q Consensus 253 --~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~--~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~ 328 (370)
..|..|.+|+++..|-+|+.+++..+...... ..+..|-+-||+.+.++.| .+.+++.+.+.++. . .-.
T Consensus 395 vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~ell~~-~----~~~ 467 (497)
T PLN02405 395 VVELCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEF--SKCMESTLKELLGE-E----VSE 467 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCH--HHHHHHHHHHHhCc-c----cCc
Confidence 34567899999999999999999987311000 1235789999999999998 99999999886532 1 123
Q ss_pred cccccccccccccccccceeE
Q 017527 329 IWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~ 349 (370)
...+..++++- -.|||-++
T Consensus 468 ~v~l~~a~DGS--GvGAAl~A 486 (497)
T PLN02405 468 SIEVEHSNDGS--GIGAALLA 486 (497)
T ss_pred eEEEEEecCch--HHHHHHHH
Confidence 45666666665 66775544
|
|
| >PLN02596 hexokinase-like | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.1e-07 Score=94.99 Aligned_cols=302 Identities=14% Similarity=0.048 Sum_probs=157.5
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEE--EEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc-
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRS- 93 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~--~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~- 93 (370)
.+.+|++|+|||+.|+.++.+ .|+ +... ...+ +........+++++-|.+.|.+++++.+....
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~ 165 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARL---------GGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEAD 165 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEE---------cCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 468899999999999999998 332 1211 1112 22222235788999999999999987643211
Q ss_pred ---CcceEEEeecCCCCh---------hh---------HHHHHHHHHhhC---C-CCceEEEeChHHHHHHhhcCC-CCC
Q 017527 94 ---AVRAVCLAVSGVNHP---------TD---------QQRILNWLRDIF---P-GNVRLYVHNDALAALASGTMG-KLH 147 (370)
Q Consensus 94 ---~v~~IgIgvpG~~~~---------~~---------~~~l~~~L~~~f---~-~~~pV~V~NDa~aa~~g~~~g-~~~ 147 (370)
+..-+|+..+=+... .| +.++.+.|++.+ + .-..+.|.||+.+.++++.+- .+.
T Consensus 166 ~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~~ 245 (490)
T PLN02596 166 TPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKDT 245 (490)
T ss_pred CcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCCe
Confidence 112233333322110 01 234444444433 2 113677999999998887543 345
Q ss_pred eEEEEEcccceeeeeccC-------------CceEeeCCCCCCcCCC-----------------C--------ch---HH
Q 017527 148 GCVLIAGTGTIAYGFTED-------------GRDARAAGAGPILGDW-----------------G--------SG---YG 186 (370)
Q Consensus 148 ~v~l~~GTGi~g~gii~d-------------G~l~~aGg~G~llgd~-----------------G--------s~---~~ 186 (370)
.+.+|+|||++++.+-.- ++..-.=|||.+-... | || +|
T Consensus 246 ~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiSG~YLGE 325 (490)
T PLN02596 246 VAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTSGMYLGE 325 (490)
T ss_pred EEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHhhhhHHH
Confidence 678999999998754321 1222335676431100 0 11 12
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHH-H----------hcCCHHH
Q 017527 187 IAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSC-A----------EAGDEVA 255 (370)
Q Consensus 187 iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~-A----------~~GD~~A 255 (370)
|.+..+...... +..-...+-..+.+.|.+.+ ..+.....+... +.. .+..++.. . ..=-..|
T Consensus 326 lvRlvl~~l~~~--~~lF~~~~~~~L~~~~~l~T--~~lS~i~~d~s~-~~~-~~~~~l~~~l~~~~~~~~d~~~lr~i~ 399 (490)
T PLN02596 326 IVRRVLLKMAEE--TALFGDTLPPKLTTPYLLRS--PDMAAMHQDTSE-DHE-VVNEKLKEIFGITDSTPMAREVVAEVC 399 (490)
T ss_pred HHHHHHHHHHHh--ccccCCCCcHhhcCCCcccc--HHHHHHhcCCCc-hHH-HHHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 222222111110 00000000001111111111 111111111100 000 01111110 0 0001357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccc
Q 017527 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHS 335 (370)
Q Consensus 256 ~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~ 335 (370)
..|.+|+++..|-+++.+++..+. ....+..|-+-|++.+.++.| .+.+++.+.+.++. . .-..+.+..+
T Consensus 400 ~~V~~RAArL~Aa~iaail~k~g~---~~~~~~~VavDGSvye~~p~f--~~~l~~al~ellg~-~----~~~~i~~~~s 469 (490)
T PLN02596 400 DIVAERGARLAGAGIVGIIKKLGR---IENKKSVVTVEGGLYEHYRVF--RNYLHSSVWEMLGS-E----LSDNVVIEHS 469 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCCCceEEEEeCcceeeCcCH--HHHHHHHHHHHhCc-c----cCCcEEEEEc
Confidence 788999999999999999999861 222346899999999999998 99999999886531 1 1224555556
Q ss_pred ccccccccccceeE
Q 017527 336 CDQASANCCGAALC 349 (370)
Q Consensus 336 ~~~~~~~~~~~~~~ 349 (370)
+++- =.|||-++
T Consensus 470 ~DGS--G~GAAl~A 481 (490)
T PLN02596 470 HGGS--GAGALFLA 481 (490)
T ss_pred cCch--hHHHHHHH
Confidence 6655 45655433
|
|
| >PLN02362 hexokinase | Back alignment and domain information |
|---|
Probab=98.97 E-value=3e-07 Score=94.43 Aligned_cols=297 Identities=13% Similarity=0.074 Sum_probs=159.2
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC---CeE----EEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL---PVL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR- 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g---~il----~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~- 92 (370)
.+.++++|+|||+.|+.++.+ .| .++ .+... +........+++++-|.+.|.+++++.....
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~I-p~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~ 163 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQL---------GGQRSSILSQDVERHPI-PQHLMNSTSEVLFDFIASSLKQFVEKEENGSE 163 (509)
T ss_pred ceeEEEEecCCceEEEEEEEe---------cCCCcceeeceeEEEec-ChhhccCCHHHHHHHHHHHHHHHHHhcCcccc
Confidence 568999999999999999998 33 222 12222 2233334578999999999999998865321
Q ss_pred ---cCcceEEEeecCCCChh---------h----------HHHHHHHHHhhC---CC-CceEEEeChHHHHHHhhcCCC-
Q 017527 93 ---SAVRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF---PG-NVRLYVHNDALAALASGTMGK- 145 (370)
Q Consensus 93 ---~~v~~IgIgvpG~~~~~---------~----------~~~l~~~L~~~f---~~-~~pV~V~NDa~aa~~g~~~g~- 145 (370)
.+..-+|+..+=+.... | +.++.+.|++.+ +. -..+.|.||+.+.++++.+-.
T Consensus 164 ~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~ 243 (509)
T PLN02362 164 FSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP 243 (509)
T ss_pred ccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC
Confidence 12233555544443210 1 124444444433 21 135678899999988775433
Q ss_pred CCeEEEEEcccceeeeeccC--------------CceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCC--CC----
Q 017527 146 LHGCVLIAGTGTIAYGFTED--------------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PD---- 205 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~d--------------G~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~--~~---- 205 (370)
...+.+|+|||++++-+ .+ ++..-.=|||-+ +.. +...+..-...|... |.
T Consensus 244 ~~~iG~IlGTGtNacY~-E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~f 314 (509)
T PLN02362 244 DTVAAVIIGTGTNACYL-ERTDAIIKCQGLLTTSGSMVVNMEWGNF-WSS-------HLPRTSYDIDLDAESPNPNDQGF 314 (509)
T ss_pred CceEEEEEECCccceEe-eehhhcccccccCCCCCcEEEEeeccCC-CCC-------CCCCchHHHHHhcCCCCcCcchH
Confidence 34578999999998744 32 112223456643 110 000111111122111 00
Q ss_pred ---------chhHHHHHH------------------HcCCCChhhHHHHhccCCChHHHhhhHHHHHHHH------hcCC
Q 017527 206 ---------TMLTSNILS------------------TLELSSPDELIGWTYVDPSWARIAALVPVVVSCA------EAGD 252 (370)
Q Consensus 206 ---------~~l~~~~~~------------------~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A------~~GD 252 (370)
..+.+.++- .|.+.+ ..+.....+.. ..+. .+..+++.. ...|
T Consensus 315 EKmiSG~YLGEivRlvL~~l~~~~~lF~~~~~~L~~~~~l~T--~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~~~ 390 (509)
T PLN02362 315 EKMISGMYLGDIVRRVILRMSQESDIFGPVSSRLSTPFVLRT--PSVAAMHEDDS-PELQ-EVARILKETLGISEVPLKV 390 (509)
T ss_pred HHHHhhccHHHHHHHHHHHHHhccccccCCcHhhcCCCcccc--HHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCCHHH
Confidence 011111111 111111 01111111110 0111 111122110 0011
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--C----------CCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 253 -----EVANKILQDSVEELALSVKAVVQRLSLSGED--G----------KHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 253 -----~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~--~----------~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
..|..|.+|+++..|-+|+.+++..+..... . ..+..|-+-||+.+.++.| .+.+++.+++
T Consensus 391 ~~~v~~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~e 468 (509)
T PLN02362 391 RKLVVKICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMF--REYLHEALNE 468 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCH--HHHHHHHHHH
Confidence 4577789999999999999999987621110 0 1135888999999999998 9999999988
Q ss_pred hCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 316 DYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 316 ~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.++. . .-..+.+..++++- -.|||-++
T Consensus 469 ll~~-~----~~~~v~i~~a~DGS--gvGAAl~A 495 (509)
T PLN02362 469 ILGE-D----VAQHVILKATEDGS--GIGSALLA 495 (509)
T ss_pred HhCc-c----cCceEEEEEccCch--HHHHHHHH
Confidence 6522 1 11345555566655 66776554
|
|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.9e-08 Score=92.39 Aligned_cols=126 Identities=18% Similarity=0.110 Sum_probs=82.1
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee-
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV- 102 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv- 102 (370)
+|+||+|+|++++++++. ++++.+.+.++.... +++++. +.+.++++..+.+..++.+|++|.
T Consensus 2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~~--~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSRR--TADEYG----VWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCCC--CHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence 799999999999999986 788887776664332 455544 445556666665556788999888
Q ss_pred -cCCCChhhHHHHHH----------HHHhhCCCCceEEEeCh--------HHHHHHhhcCCCCCeEEEEEcccceeeeec
Q 017527 103 -SGVNHPTDQQRILN----------WLRDIFPGNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 103 -pG~~~~~~~~~l~~----------~L~~~f~~~~pV~V~ND--------a~aa~~g~~~g~~~~v~l~~GTGi~g~gii 163 (370)
|+..+.- ...+.. ..+..++ +|+.++|+ ++|.++.+.+. .+.+++.+||++ ...++
T Consensus 66 vp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g--l~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~-t~d~v 140 (258)
T PRK13318 66 VPSVMHSL-ERMCRKYFNIEPLVVVGPGVKTG--INIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTAT-TFDVV 140 (258)
T ss_pred cCchHHHH-HHHHHHHhCCCCeEEECCCcCCC--CceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCce-EEEEE
Confidence 5443211 111111 1222333 78999999 66665555443 389999999998 44565
Q ss_pred -cCCceEe
Q 017527 164 -EDGRDAR 170 (370)
Q Consensus 164 -~dG~l~~ 170 (370)
.+|+...
T Consensus 141 ~~~g~~~G 148 (258)
T PRK13318 141 SAKGEYLG 148 (258)
T ss_pred cCCCcEEE
Confidence 6776543
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-06 Score=81.54 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=121.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|++|++++|. |+++.+....+.. ..+. +.+.+.+++++.+.++.++.+|++
T Consensus 1 ~~lGIDiGtts~K~vl~d~----------g~il~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~i~~i~~-- 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLMED----------GKVIGYKWLDTTP----VIEE----TARAILEALKEAGIGLEPIDKIVA-- 60 (248)
T ss_pred CEEEEEcChhheEEEEEcC----------CEEEEEEEecCCC----CHHH----HHHHHHHHHHHcCCChhheeEEEE--
Confidence 5799999999999999985 8999888764432 2333 455666667777776677877655
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh--cCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~--~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd 180 (370)
.|.....- . |. .+. .+...|-+.|. .++..+. ++-+|..-.-+-.+.+|++... ...+
T Consensus 61 Tg~~~~~v--~--------~~--~~~--~~ei~~~~~g~~~~~~~~~~-vidiGgqd~k~i~~~~g~~~~~-----~~n~ 120 (248)
T TIGR00241 61 TGYGRHKV--G--------FA--DKI--VTEISCHGKGANYLAPEARG-VIDIGGQDSKVIKIDDGKVDDF-----TMND 120 (248)
T ss_pred ECCCcccc--c--------cc--CCc--eEEhhHHHHHHHHHCCCCCE-EEEecCCeeEEEEECCCcEeee-----eecC
Confidence 45432110 1 22 222 33444433333 2444344 4445433323334446765410 0011
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh----hhH-HHHHHHHhcCCHHH
Q 017527 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA----ALV-PVVVSCAEAGDEVA 255 (370)
Q Consensus 181 ~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a----~~~-~~v~~~A~~GD~~A 255 (370)
..++ | ...+.+.+.+.+++ +.+++-...........++ .++ .+++....+|.+.
T Consensus 121 ~ca~----------------G---tg~f~e~~a~~l~~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~- 179 (248)
T TIGR00241 121 KCAA----------------G---TGRFLEVTARRLGV-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK- 179 (248)
T ss_pred cccc----------------c---ccHHHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH-
Confidence 1110 0 01234445555553 3444332222111111111 122 4566777777644
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcccCcccccchHHHHHHH
Q 017527 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 256 ~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~-~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
.+++..+.+.++..+..+++.++ ++ .|++.||++. ++.| .+.+.+.+
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~--------~~~~Vvl~GGva~-n~~l--~~~l~~~l 227 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLK--------IEAPIVFTGGVSK-NKGL--VKALEKKL 227 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC--------CCCCEEEECcccc-CHHH--HHHHHHHh
Confidence 47888888899999998888877 45 8999999986 4454 66666655
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-06 Score=84.85 Aligned_cols=301 Identities=14% Similarity=0.017 Sum_probs=161.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC---eEEE--EEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLAR--AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~---il~~--~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.+.++++|+|||+.|+.++.. .|. +... ....|.+...-+.++..+.|.+.+..++.+.+.....=
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L---------~g~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~ 155 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKL---------GGGRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASK 155 (474)
T ss_pred CCCEEEEecCCCceEEEEEEe---------cCCcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccccccc
Confidence 568999999999999999987 332 2222 22223333323578899999999999998876531110
Q ss_pred ceEEEeecCCCChh---------h----------HH----HHHHHHHhhCCC-CceEEEeChHHHHHHhhc-CCCCCeEE
Q 017527 96 RAVCLAVSGVNHPT---------D----------QQ----RILNWLRDIFPG-NVRLYVHNDALAALASGT-MGKLHGCV 150 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---------~----------~~----~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~-~g~~~~v~ 150 (370)
.-+|+..+=+.+.. | +. -|.+.|+++.-. -.-+.|.||+...++++. .+.+..+.
T Consensus 156 l~lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~ig 235 (474)
T KOG1369|consen 156 LPLGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIG 235 (474)
T ss_pred cccceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEE
Confidence 34455544443211 1 11 355666655421 123779999999888764 55678889
Q ss_pred EEEcccceeeeeccCCce------------EeeCCCCCCcCCCCchHHHHHH---HHHH-----HHHHHcCCCCCch---
Q 017527 151 LIAGTGTIAYGFTEDGRD------------ARAAGAGPILGDWGSGYGIAAQ---ALTA-----VIRAYDGRGPDTM--- 207 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~l------------~~aGg~G~llgd~Gs~~~iG~~---~~~~-----~~~~~dg~~~~~~--- 207 (370)
|+.|||++++-+...+++ +-.=|||-+ +|+ +...+.-+ .+.+ -..-+|...+...
T Consensus 236 vI~GTGtNacY~e~~~~i~k~~~~~~~~~miIN~EWG~F-~~~-~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGE 313 (474)
T KOG1369|consen 236 VIFGTGTNACYMEDMRNIEKVEGDAGRGPMCINTEWGAF-GDN-SLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGE 313 (474)
T ss_pred EEECCCccceeeeeccchhhcccccCCCceEEEccccCC-Ccc-ccccchhhHHHHHhhhcCCcchhHHHHHhccccHHH
Confidence 999999998765544432 223567654 222 11111000 0000 0000000001111
Q ss_pred hHHHHHHHcCCCC-----------hh----hHHHHhccCCChHHHhhhHHHHHHHHh-----cC-----CHHHHHHHHHH
Q 017527 208 LTSNILSTLELSS-----------PD----ELIGWTYVDPSWARIAALVPVVVSCAE-----AG-----DEVANKILQDS 262 (370)
Q Consensus 208 l~~~~~~~~~~~s-----------~~----~l~~~~~~~~~~~~~a~~~~~v~~~A~-----~G-----D~~A~~il~~a 262 (370)
+.+.++..+...+ +. .++.....+. ...+..... +.+... .. -+.|.-+-+|+
T Consensus 314 ivR~vLl~m~~~~~lf~~~~~~l~p~~~~T~~~S~i~~D~-~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~Ra 391 (474)
T KOG1369|consen 314 IVRLVLLDLLEEGLLFGGQSTKLTPFIFETKYVSAIEEDD-TGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRA 391 (474)
T ss_pred HHHHHHHHHhHhhhhhcccccccCcceeccchHHhHhcCC-chHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 1122221111000 00 0011111111 001111111 111110 01 14677888999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccccccc
Q 017527 263 VEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASAN 342 (370)
Q Consensus 263 ~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~ 342 (370)
++.-|.+|+.+++..+. ....--.|-+.|++.+.+|.| .+.+++.+++... + -.-+.+..++++. -
T Consensus 392 A~L~aagIaail~k~~~---~~~~~~~VgvdGsly~~yP~f--~~~m~~~l~eLlg-~------~~~v~i~~s~dgS--g 457 (474)
T KOG1369|consen 392 ARLAAAGIAAILNKTGE---LSRKRVTVGVDGSLYKNHPFF--REYLKEALRELLG-P------SIHVKLVLSEDGS--G 457 (474)
T ss_pred HHHHHhHHHHHHHHhcc---cccCceEEEeccchhHcCchH--HHHHHHHHHHHhC-C------CceEEEEECCCCc--c
Confidence 99999999999999872 122235688999999999998 9999999997654 1 1134555556555 5
Q ss_pred ccccee
Q 017527 343 CCGAAL 348 (370)
Q Consensus 343 ~~~~~~ 348 (370)
.|||-+
T Consensus 458 ~GAAL~ 463 (474)
T KOG1369|consen 458 RGAALI 463 (474)
T ss_pred ccHHHH
Confidence 666543
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=79.89 Aligned_cols=126 Identities=17% Similarity=0.067 Sum_probs=79.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|+||+|+|++++++++. ++++.+.+.++... .+++++.+.+.+.+ ++.+.+.+++.+|+++.
T Consensus 1 MiL~IDIGnT~ik~gl~~~----------~~i~~~~~~~T~~~--~~~~~~~~~l~~l~----~~~~~~~~~i~~i~vss 64 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDG----------DRLLRSFRLPTDKS--RTSDELGILLLSLF----RHAGLDPEDIRAVVISS 64 (256)
T ss_pred CEEEEEECCCeEEEEEEEC----------CEEEEEEEEecCCC--CCHHHHHHHHHHHH----HHcCCChhhCCeEEEEe
Confidence 3799999999999999997 47777666666543 25666555555544 44454455788888876
Q ss_pred cCCCChhhHHHHHHHHHh-------------------hCCCCceEEEeCh--HHHHHHhhcCCCCCeEEEEEcccceeee
Q 017527 103 SGVNHPTDQQRILNWLRD-------------------IFPGNVRLYVHND--ALAALASGTMGKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~-------------------~f~~~~pV~V~ND--a~aa~~g~~~g~~~~v~l~~GTGi~g~g 161 (370)
++ |.....+.+.+++ .+. .|..+.+| ++|.++.+.+..++.+++.+||=+----
T Consensus 65 --Vv-p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~--~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~T~d~ 139 (256)
T PRK13321 65 --VV-PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYD--NPREVGADRIVNAVAARRLYPDRNLIVVDFGTATTFDC 139 (256)
T ss_pred --ec-ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccC--ChhhccHHHHHHHHHHHHHcCCCCEEEEECCCceEEEE
Confidence 44 3333334333333 233 47778899 5555444444435899999999984432
Q ss_pred eccCCceE
Q 017527 162 FTEDGRDA 169 (370)
Q Consensus 162 ii~dG~l~ 169 (370)
+..+|+..
T Consensus 140 v~~~g~~~ 147 (256)
T PRK13321 140 VSGKGEYL 147 (256)
T ss_pred EcCCCcEE
Confidence 33444443
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00024 Score=67.69 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=88.4
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
..+++++|+|.|++++++.+. +++++.....+.... .-.+.+.+.+.|..+++.+-+..+. ++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~~ 90 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELTH 90 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcCe
Confidence 569999999999999999876 565655544432111 1123555556555555554434443 3777
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEee
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~a 171 (370)
+.+++|.--+......+.+.+++. +. .+..+.++..+++.+ ++..+.+++-+|.|+--..++.+|++...
T Consensus 91 v~~~vp~~~~~~~~~~~~~~~~~a-Gl-~~~~ii~e~~A~a~~--~~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 91 AATAIPPGTSEGDPRAIINVVESA-GL-EVTHVLDEPTAAAAV--LGIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHc-CC-ceEEEechHHHHHHH--hCCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 888999875544455666666655 32 356689999887654 23345678889988866677788887654
|
|
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00017 Score=71.73 Aligned_cols=138 Identities=16% Similarity=0.040 Sum_probs=84.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEE---EEec--CCCccccCHHHHHHHHHHHHHHHHHHcCCCc-cC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR---AAAG--CSNHNSVGEDAARETIEKVMADALLKSGSNR-SA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~---~~~~--~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~ 94 (370)
.+.+|.+|.|||++|+.++.+. ++|+.-.. ...| +... ..++++...|.+-+..++.++.... .+
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~-------g~gt~~~~~sks~lp~e~~~~--~~~~~l~~~iadrl~~fi~~~~~~~~~~ 144 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLG-------GDGTFDIEQSKSFLPVECRDS--ESRDELFGFIADRLAAFIKEQHPSGYGS 144 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeC-------CCCCcccccCcccCchhhccC--CChHHHHHHHHHHHHHHHHHhCchhccC
Confidence 4689999999999999999872 13332211 1111 2221 2578899999999999888765321 12
Q ss_pred cceEEEeecCCCChh---------h----------HH----HHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCCCCeEE
Q 017527 95 VRAVCLAVSGVNHPT---------D----------QQ----RILNWLRDIFPGNVRLYVHNDALAALASGT-MGKLHGCV 150 (370)
Q Consensus 95 v~~IgIgvpG~~~~~---------~----------~~----~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~~~~v~ 150 (370)
-.-+|+..+=+.++. | +. -|.+.|+++.-.-.-+.|.||+.+.+++.. .+.++.+.
T Consensus 145 ~l~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG 224 (466)
T COG5026 145 KLPIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIG 224 (466)
T ss_pred cceeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEE
Confidence 222444444332211 1 11 245555555421112568999999988764 46689999
Q ss_pred EEEcccceeeeeccCCc
Q 017527 151 LIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 151 l~~GTGi~g~gii~dG~ 167 (370)
++.|||.+|+-+..-|+
T Consensus 225 ~IfGTGtN~~y~e~~~~ 241 (466)
T COG5026 225 IIFGTGTNGCYCEPKGR 241 (466)
T ss_pred EEEecCccceEEeeccc
Confidence 99999999975554343
|
|
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=98.27 E-value=6.9e-07 Score=91.56 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=79.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
||||+|.|++|++++|. +|+++.+.+.+.+. ....++++.++.+.+++++++++++.++.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 68999999999999999 89999888766531 0124688999999999999999988887889999
Q ss_pred EEe--ecCCC--Chhh--------H--HHH---HHHHHhhCCCCceEEEeChHHH
Q 017527 99 CLA--VSGVN--HPTD--------Q--QRI---LNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 99 gIg--vpG~~--~~~~--------~--~~l---~~~L~~~f~~~~pV~V~NDa~a 136 (370)
|++ .||++ +... + .+. .+.|++.++ .|++++|+++.
T Consensus 72 gvs~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~--~~~~~~~~g~~ 124 (481)
T TIGR01312 72 GISGQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELG--DERVLEITGNL 124 (481)
T ss_pred EEecCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcC--HhHHHHHHCCC
Confidence 999 99986 5321 1 123 667777776 67878887764
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0013 Score=61.48 Aligned_cols=129 Identities=20% Similarity=0.155 Sum_probs=82.4
Q ss_pred EEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 26 GVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+|+|.|+++++..+. ++..++....+.. +..-.+.+.+...|..+.+.+-...+ .++..+.+++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g---~~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG---IELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhC---CCcCcEEEEE
Confidence 7899999999999887 4444444433221 11112345555545454444323333 3567888999
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
|..-++..+..+.+.++.. +. .++.+.|+..|++++ ++..+.+++-+|.|.--..++.+|++..
T Consensus 69 P~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~--~~~~~~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 69 PPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAV--LQIKNGAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred CCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHH--hcCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence 9876555555666666655 32 488999999998774 2334568888998876666777887654
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=82.53 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=63.0
Q ss_pred cCCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 18 ~~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
|.|..|+||||+|+|++|++++|. +|+++...+.+. +.....+++.+.+.+.+++++++++.+.+
T Consensus 1 ~~m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~ 71 (498)
T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGIS 71 (498)
T ss_pred CCccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCC
Confidence 345569999999999999999998 899998865332 11112478999999999999999988887
Q ss_pred ccCcceEEEeecCC
Q 017527 92 RSAVRAVCLAVSGV 105 (370)
Q Consensus 92 ~~~v~~IgIgvpG~ 105 (370)
+++|.+||++.-+.
T Consensus 72 ~~~I~~Igis~~~~ 85 (498)
T PRK00047 72 PDQIAAIGITNQRE 85 (498)
T ss_pred hhHeeEEEEecCcc
Confidence 77899888876543
|
|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.3e-05 Score=73.23 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||||+|.|++|++++|. +|+++...+.+.+. ....+++++.+.+.+++++++++.+..+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7999999999999999998 89999887654321 11257999999999999999999988888999
Q ss_pred eEEEeecCC
Q 017527 97 AVCLAVSGV 105 (370)
Q Consensus 97 ~IgIgvpG~ 105 (370)
+|+++.-+.
T Consensus 72 aI~is~~~~ 80 (245)
T PF00370_consen 72 AIGISGQGH 80 (245)
T ss_dssp EEEEEE-SS
T ss_pred EEEeccccC
Confidence 988876553
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0032 Score=60.46 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=45.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|.|.++++++|. ++++.....++... + .+...+++++++++.+....++..++.
T Consensus 33 ~~~GIDiGStt~K~Vlld~----------~~i~~~~~~~tg~~----~---~~~a~~~l~~~l~~~g~~~~~v~~~~~-- 93 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD----------GELYGYNSMRTGNN----S---PDSAKNALQGIMDKIGMKLEDINYVVG-- 93 (293)
T ss_pred EEEEEEeCchhEEEEEEeC----------CEEEEEEeecCCCC----H---HHHHHHHHHHHHHHcCCcccceEEEEE--
Confidence 8999999999999999996 57776666544321 2 234556667777777776667776654
Q ss_pred cCCC
Q 017527 103 SGVN 106 (370)
Q Consensus 103 pG~~ 106 (370)
.|..
T Consensus 94 TGyG 97 (293)
T TIGR03192 94 TGYG 97 (293)
T ss_pred ECcc
Confidence 4554
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=97.88 E-value=5.7e-05 Score=77.99 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=61.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.|+||||+|+|++|++++|. +|+++...+.+... ....+++.+.+.+.+++++++++++.++++|
T Consensus 1 ~~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 71 (493)
T TIGR01311 1 PYILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDI 71 (493)
T ss_pred CeEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 37999999999999999998 89999887764321 1124688999999999999999988777789
Q ss_pred ceEEEeecCC
Q 017527 96 RAVCLAVSGV 105 (370)
Q Consensus 96 ~~IgIgvpG~ 105 (370)
.+||++.-+.
T Consensus 72 ~aIgis~~~~ 81 (493)
T TIGR01311 72 AAIGITNQRE 81 (493)
T ss_pred eEEEEecCcc
Confidence 8888876543
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0013 Score=62.14 Aligned_cols=255 Identities=20% Similarity=0.192 Sum_probs=144.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHH---HHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETI---EKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l---~~~i~~~l~~~~~~~~~v~~ 97 (370)
+.-++-|.-|.|+|++++++. +-.+ ......-+-..-...+.+.+++ .+++.+.+.+.+.+.+.+.+
T Consensus 2 ~yriltINPGststKlaVfe~---------ek~i-fe~tlrhs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~~i~~~dA 71 (358)
T COG3426 2 MYRILTINPGSTSTKLAVFED---------EKEI-FEKTLRHSLEELEKFKRIPDQFEFRKDAILEFIDEQGYNISKFDA 71 (358)
T ss_pred ceeEEEecCCCccceEEEecC---------chHh-hHHHhhcCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCCCcCCccc
Confidence 445888999999999999976 2222 2211110000000012233332 36788888888887777776
Q ss_pred EEEeecCCCCh----------hh----------------HHHHHHHHHhhCCCCceEEEeChHH------HHHHhh----
Q 017527 98 VCLAVSGVNHP----------TD----------------QQRILNWLRDIFPGNVRLYVHNDAL------AALASG---- 141 (370)
Q Consensus 98 IgIgvpG~~~~----------~~----------------~~~l~~~L~~~f~~~~pV~V~NDa~------aa~~g~---- 141 (370)
|. |=-|+..| .. .-.+...+.+.++ +|.||..-+. .|-.++
T Consensus 72 vv-gRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~g--vPayIVDPvvVDEm~~~Ar~SG~p~i 148 (358)
T COG3426 72 VV-GRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALG--VPAYIVDPVVVDEMEDVARFSGIPEI 148 (358)
T ss_pred ee-ecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcC--CCeeeeCceehhhcchhhhhcCCccc
Confidence 52 33444332 11 1245556666666 6766544321 121110
Q ss_pred --------------------cCCC----CCeEEEEEcccceeeeeccCCceEe----eCCCCCCcCCCCchHHHHHHHHH
Q 017527 142 --------------------TMGK----LHGCVLIAGTGTIAYGFTEDGRDAR----AAGAGPILGDWGSGYGIAAQALT 193 (370)
Q Consensus 142 --------------------~~g~----~~~v~l~~GTGi~g~gii~dG~l~~----aGg~G~llgd~Gs~~~iG~~~~~ 193 (370)
..|+ -++|+..+|.|+ ..+-..+|+..- .-+=|.+ +.+-
T Consensus 149 ~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggi-SV~ah~~GrvIDvnnaldgeGPf-sper----------- 215 (358)
T COG3426 149 ERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGI-SVGAHKQGRVIDVNNALDGEGPF-SPER----------- 215 (358)
T ss_pred hhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCce-EEEEecCCcEEeccCCCCCCCCC-Cccc-----------
Confidence 0122 477888899997 556668898753 1111221 1111
Q ss_pred HHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC-hHHH-hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Q 017527 194 AVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARI-AALVPVVVSCAEAGDEVANKILQDSVEELALSVK 271 (370)
Q Consensus 194 ~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~-a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~ 271 (370)
.|..|...+.+.+.. +--+.++++........ -+-. ...+.+|...+++||..|+.+++-++..+++-|.
T Consensus 216 ------sG~lP~~dlv~lcfS--gk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaKeIG 287 (358)
T COG3426 216 ------SGTLPTGDLVRLCFS--GKYTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAKEIG 287 (358)
T ss_pred ------CCCCChHHHHHHHhc--CcccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 122222222222221 11134455544321110 0000 1235788899999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 272 AVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 272 ~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
.....|. -.|+.|||.||++.. +.| .+.+.+.+.--.|
T Consensus 288 ~~savL~------G~vDaIvLTGGiA~~-~~f--~~~I~~~v~~iap 325 (358)
T COG3426 288 AMSAVLK------GKVDAIVLTGGIAYE-KLF--VDAIEDRVSWIAP 325 (358)
T ss_pred hhhhhcC------CCCCEEEEecchhhH-HHH--HHHHHHHHhhhcc
Confidence 9999886 248999999999864 455 7778777766333
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.012 Score=58.84 Aligned_cols=65 Identities=25% Similarity=0.341 Sum_probs=48.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
++++|||+|+|.+++++++. ++++.....++.. + .+.+.+++++++++.+++..++..+++
T Consensus 144 g~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~~-----~---~~~a~~~l~~~l~~~Gl~~~di~~i~~- 204 (404)
T TIGR03286 144 GLTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTTK-----V---IESAEEAVERALEEAGVSLEDVEAIGT- 204 (404)
T ss_pred CEEEEEEcChhheeeEEEcC----------CeEEEEEEeeccc-----H---HHHHHHHHHHHHHHcCCCccceeEEEe-
Confidence 48999999999999999985 6888776654421 1 455777788888888887777776655
Q ss_pred ecCCC
Q 017527 102 VSGVN 106 (370)
Q Consensus 102 vpG~~ 106 (370)
.|.-
T Consensus 205 -TGyG 208 (404)
T TIGR03286 205 -TGYG 208 (404)
T ss_pred -eeec
Confidence 4554
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=8.5e-05 Score=77.69 Aligned_cols=75 Identities=20% Similarity=0.194 Sum_probs=60.5
Q ss_pred CCcEEEEEEcCccceEEEEEe-CCCCCCCCCCCCCeEEEEEecCCCc------------cccCHHHHHHHHHHHHHHHHH
Q 017527 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCSNH------------NSVGEDAARETIEKVMADALL 86 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d-~~~~~~~~~~~g~il~~~~~~~~n~------------~~~~~~~~~~~l~~~i~~~l~ 86 (370)
|+.|+||||+|+|++|++++| . +|+++.+...+.++. ..++++++.+.+.++++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999 6 799988875544311 124688899999999999999
Q ss_pred HcCCCccCcceEEEeec
Q 017527 87 KSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 87 ~~~~~~~~v~~IgIgvp 103 (370)
+++.++.+|.+||++--
T Consensus 72 ~~~~~~~~I~aIgis~~ 88 (548)
T PRK04123 72 EAGVDPAAVVGIGVDFT 88 (548)
T ss_pred HcCCChhhEEEEEEecc
Confidence 88887778998888754
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00013 Score=75.97 Aligned_cols=75 Identities=19% Similarity=0.168 Sum_probs=60.4
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNR 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 92 (370)
+.|+||||+|+|++|++++|. +|+++.....+.+ .....++++..+.+.+++++++++++.++
T Consensus 2 m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~ 72 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPA 72 (520)
T ss_pred CcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCc
Confidence 359999999999999999999 8999987754311 11224688999999999999998888777
Q ss_pred cCcceEEEeecC
Q 017527 93 SAVRAVCLAVSG 104 (370)
Q Consensus 93 ~~v~~IgIgvpG 104 (370)
.+|.+||++..+
T Consensus 73 ~~I~aI~~s~~~ 84 (520)
T PRK10939 73 SDIAAVSATSMR 84 (520)
T ss_pred cceEEEEEECCc
Confidence 789998887553
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=76.55 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=58.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++||||+|+|++|++++|. +|+++.+...+. +.....+++++.+.+.+++++++++.+..+.+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 3799999999999999998 899998765321 1122357899999999999999998887777899
Q ss_pred eEEEeec
Q 017527 97 AVCLAVS 103 (370)
Q Consensus 97 ~IgIgvp 103 (370)
+|||+.+
T Consensus 72 ~Igis~~ 78 (541)
T TIGR01315 72 GIGFDAT 78 (541)
T ss_pred EEEeccc
Confidence 9998864
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P) | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00046 Score=63.21 Aligned_cols=114 Identities=15% Similarity=0.054 Sum_probs=72.2
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--eE-EEEEecCC-CccccCHHHHHHHHHHHHHHHHHHcCC-CccCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VL-ARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGS-NRSAV 95 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il-~~~~~~~~-n~~~~~~~~~~~~l~~~i~~~l~~~~~-~~~~v 95 (370)
.+.+|++|+|||++|++++.+ .|. +. .+.....+ .......+++++-|.+.|.+++++... ...+.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L---------~g~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~ 132 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVEL---------SGNGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEK 132 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEE---------ESSSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSE
T ss_pred CceEEEEeecCcEEEEEEEEE---------cCCCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccc
Confidence 468999999999999999998 333 21 22222222 211123588999999999999998765 33455
Q ss_pred ceEEEeecCCCChh---------h--------------HHHHHHHHHhhCCC-CceEEEeChHHHHHHhhcC
Q 017527 96 RAVCLAVSGVNHPT---------D--------------QQRILNWLRDIFPG-NVRLYVHNDALAALASGTM 143 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---------~--------------~~~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~~ 143 (370)
..+|+..+=+.+.. | ...|.+.|+++--. ...+.|.||+.+.++++.+
T Consensus 133 l~lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 133 LPLGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp EEEEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cceEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 56777777663211 1 12455666555321 1357899999999887654
|
The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A .... |
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00022 Score=73.88 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=62.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCC-CCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHHHcCCCc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCSNH------NSVGEDAARETIEKVMADALLKSGSNR 92 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~-g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~~~~~~~ 92 (370)
|+.|+||||+|+|++|++++|. + ++++...+....-. ...++++..+.+.+++++++++..++.
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 3569999999999999999999 6 78887765543211 125799999999999999999988777
Q ss_pred cCcceEEEeecCC
Q 017527 93 SAVRAVCLAVSGV 105 (370)
Q Consensus 93 ~~v~~IgIgvpG~ 105 (370)
++|.+|+|+--|.
T Consensus 73 ~~I~aI~is~~~~ 85 (502)
T COG1070 73 DAIAAIGISGQGH 85 (502)
T ss_pred hhceEEEEecccc
Confidence 8899888876554
|
|
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0002 Score=74.69 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=58.4
Q ss_pred EEEEEEcCccceEEEEEe-CCCCCCCCCCCCCeEEEEEecCC-----------------CccccCHHHHHHHHHHHHHHH
Q 017527 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS-----------------NHNSVGEDAARETIEKVMADA 84 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d-~~~~~~~~~~~g~il~~~~~~~~-----------------n~~~~~~~~~~~~l~~~i~~~ 84 (370)
|+||||+|+|++|++++| . +|+++.....+.+ ....+++++..+.+.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 7 7999977654321 112356899999999999999
Q ss_pred HHHcCCCccCcceEEEeec
Q 017527 85 LLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 85 l~~~~~~~~~v~~IgIgvp 103 (370)
+++.+.++.+|.+||++--
T Consensus 73 ~~~~~~~~~~I~aI~~s~q 91 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFT 91 (536)
T ss_pred HHHcCCCHHHEEEEEEecC
Confidence 9998877777998887653
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00026 Score=73.27 Aligned_cols=72 Identities=15% Similarity=0.200 Sum_probs=58.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||||+|+|++|++++|. +|+++.+...+.+. ....+++++.+.+.+++++++++.+.. .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 5899999999999999998 89999888763321 122468899999999999999876655 6788
Q ss_pred eEEEeecC
Q 017527 97 AVCLAVSG 104 (370)
Q Consensus 97 ~IgIgvpG 104 (370)
+|||+.-+
T Consensus 71 ~Igis~~~ 78 (505)
T TIGR01314 71 FVSFSTQM 78 (505)
T ss_pred EEEEeccc
Confidence 88887654
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.048 Score=51.74 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.+|..+..+|-+.. .|+.-..+.+++-+.++++.++. .++.|++.||++.. +.+ .+.+++.+.
T Consensus 174 Sevi~~~~~G~~~e-dI~aGl~~sia~r~~~~~~~~~~------~~~~v~~~GGva~n-~~~--~~~le~~l~ 236 (262)
T TIGR02261 174 TDVINMVSRGISAP-NILKGIHESMADRLAKLLKSLGA------LDGTVLCTGGLALD-AGL--LEALKDAIQ 236 (262)
T ss_pred hhHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhccCC------CCCcEEEECccccc-HHH--HHHHHHHhc
Confidence 35666677776554 55666666777777777777752 13469999998764 343 666777664
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00028 Score=73.25 Aligned_cols=72 Identities=19% Similarity=0.169 Sum_probs=57.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC--
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~-- 94 (370)
++||||+|+|++|++++|. +|+++.....+.+ ....++++++.+.+.+++++++++++.++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999998 8999977655432 1122468999999999999999988877666
Q ss_pred --cceEEEeec
Q 017527 95 --VRAVCLAVS 103 (370)
Q Consensus 95 --v~~IgIgvp 103 (370)
|.+||++--
T Consensus 72 ~~i~aIg~s~q 82 (512)
T PLN02295 72 SGLKAIGITNQ 82 (512)
T ss_pred cceEEEEEecC
Confidence 577776653
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=56.11 Aligned_cols=115 Identities=17% Similarity=0.184 Sum_probs=64.1
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
++.+|||+|+|.+++++++. ++++..+. .. + ...+.+.+. +.+ ..++..|.+.
T Consensus 2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~-~~-~--------~~~~~~~~~----l~~----~~~~~~i~~T 54 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKT-EY-S--------AEGKKVIDW----LIN----LQDIEKICLT 54 (277)
T ss_pred CceEEEEeCcccEEEEEEcC---------CCeEEEEe-ec-c--------HHHHHHHHH----hhc----cCCceEEEEE
Confidence 48999999999999999997 56665443 11 1 112222222 221 1345555554
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh--cC-----CCCCeEEEEEcccceeeeeccCCceEeeCCC
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TM-----GKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~--~~-----g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~ 174 (370)
=.|-. .+.+.+ .++ .|+.=.....|...|. .. +..+++++..|||+ ..-.+.+++..|.++-
T Consensus 55 G~g~~------~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~-si~~~~g~~~~r~~Gt 123 (277)
T PRK13317 55 GGKAG------YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGT-SIHYVDGNSQRRVGGT 123 (277)
T ss_pred Ccchh------hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCce-EEEEEeCCceEEEccc
Confidence 33321 222222 233 5653244444443332 12 55789999999998 5556666667776654
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00038 Score=72.10 Aligned_cols=73 Identities=19% Similarity=0.161 Sum_probs=58.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc--C
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS--A 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~--~ 94 (370)
++||||+|+|++|++++|. +|+++...+.+.+ .....++++..+.+.+++++++++.+.++. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 8999999999999999998 8999887655432 112256889999999999999988876655 7
Q ss_pred cceEEEeecC
Q 017527 95 VRAVCLAVSG 104 (370)
Q Consensus 95 v~~IgIgvpG 104 (370)
|.+||++.-+
T Consensus 74 I~aIgis~q~ 83 (504)
T PTZ00294 74 IKAIGITNQR 83 (504)
T ss_pred eEEEEeecCc
Confidence 8888887654
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.058 Score=53.21 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=42.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++||||.|.|.|++++++. +..|...... ++.- .+. + ++.+++++++.+....+|. +++
T Consensus 135 ~~~LGID~GSTtTK~VLm~d---------~~~I~~~~~~-~t~g---~p~-~----~~~l~~~le~l~~~~~~I~--~~~ 194 (396)
T COG1924 135 MYTLGIDSGSTTTKAVLMED---------GKEILYGFYV-STKG---RPI-A----EKALKEALEELGEKLEEIL--GLG 194 (396)
T ss_pred cEEEEEecCCcceeEEEEeC---------CCeEEEEEEE-cCCC---Chh-H----HHHHHHHHHHcccChheee--eee
Confidence 58999999999999999997 4445555443 3322 122 2 4556666776666544555 555
Q ss_pred ecCCC
Q 017527 102 VSGVN 106 (370)
Q Consensus 102 vpG~~ 106 (370)
+.|+.
T Consensus 195 ~TGYG 199 (396)
T COG1924 195 VTGYG 199 (396)
T ss_pred eeccc
Confidence 66765
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00068 Score=69.59 Aligned_cols=72 Identities=22% Similarity=0.249 Sum_probs=56.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------C--ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------N--HNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n--~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
.++||||+|+|++|++++|. +|+++...+.+.+ . ....+++++.+.+.+++++++++.. ..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~~--~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSELT--EC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCC--cc
Confidence 48999999999999999998 8999988766522 1 1224788899999999999987652 34
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+||++.-+
T Consensus 71 ~I~~I~is~~~ 81 (470)
T PRK10331 71 HIRGITVTTFG 81 (470)
T ss_pred ceEEEEEeccc
Confidence 68888776543
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00043 Score=70.67 Aligned_cols=76 Identities=21% Similarity=0.203 Sum_probs=62.9
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~------~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
|+.|+||||.|..+-|++++|. + +|+++++.+.+ .++.....+.+.++.++..++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~------~--~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDC------Q--TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEc------C--CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 4569999999999999999998 1 48888776554 23443357899999999999999999999999
Q ss_pred CcceEEEeec
Q 017527 94 AVRAVCLAVS 103 (370)
Q Consensus 94 ~v~~IgIgvp 103 (370)
+|.+||+-.-
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999988654
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0007 Score=69.77 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=54.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++||||+|+|++|++++|. +|++++..+.+.+ ....+++++..+.+.+++++++++. +.++|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 4899999999999999998 8999987644332 1222468889999999999999865 335788
Q ss_pred eEEEee
Q 017527 97 AVCLAV 102 (370)
Q Consensus 97 ~IgIgv 102 (370)
+||++.
T Consensus 70 aI~is~ 75 (484)
T PRK15027 70 ALGIAG 75 (484)
T ss_pred EEEEec
Confidence 888864
|
|
| >PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.031 Score=56.12 Aligned_cols=55 Identities=25% Similarity=0.258 Sum_probs=46.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCc
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~ 300 (370)
..++|.+.+++||+.|..+++-++..+++.|.++...|+ | ..+.||+.||+.+..
T Consensus 280 D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~--G----~vDaivfTGGige~~ 334 (388)
T PF00871_consen 280 DMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE--G----GVDAIVFTGGIGENS 334 (388)
T ss_dssp -HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT--S----S-SEEEEEHHHHHHT
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc--c----CCCEEEEccccccch
Confidence 468899999999999999999999999999999999994 0 269999999999864
|
The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A .... |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.001 Score=68.23 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=55.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~--------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
+++||||+|+|++|++++|. +|+++...+.+.+ .....+++++.+.+.+++++++.+ .++.
T Consensus 1 ~~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~ 69 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEK 69 (465)
T ss_pred CeEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChh
Confidence 37999999999999999998 8999987765421 111247889999999999999864 3446
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+|+++.-|
T Consensus 70 ~I~aI~~s~~~ 80 (465)
T TIGR02628 70 HIRGIAVTTFG 80 (465)
T ss_pred ceEEEEEeccc
Confidence 79988886543
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.083 Score=50.63 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=67.5
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
.+|||+|||-+|++..+. ++++.... .++. ..+++++-+. +..... +.+..|++.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~-~~~~-----~~~~~~~~l~----~~~~~~----~~~~~i~~T-- 56 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP---------KGRRKFKT-FETT-----NIDKFIEWLK----NQIHRH----SRITTLCAT-- 56 (279)
T ss_pred eEEEEeCcceEEEEEEcC---------CCcEEEEE-eecc-----cHHHHHHHHH----HHHHhh----cCceEEEEE--
Confidence 589999999999999987 67776554 3432 2344444443 333222 223444443
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh-c-------CCCCCeEEEEEcccceeeeeccCC-ceEeeCCC
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-------MGKLHGCVLIAGTGTIAYGFTEDG-RDARAAGA 174 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-~-------~g~~~~v~l~~GTGi~g~gii~dG-~l~~aGg~ 174 (370)
|- ....+.+.+...|+ +++.-.....|...|. . .+..+.+++.+|||+ ..-. .++ +..|.||-
T Consensus 57 Gg----Ga~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGv-Si~~-v~~~~~~Rv~Gt 128 (279)
T TIGR00555 57 GG----GAFKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGT-SILY-VDGDNYERVGGT 128 (279)
T ss_pred CC----cHHHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCe-EEEE-EcCccEEEEcCc
Confidence 22 22466777777775 5554444555544332 1 123467899999997 5433 343 55666654
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0015 Score=66.00 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=61.7
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.|++++|-|.|++|+.++|. +|+++++.+.+. +..-..+|.++.++...++.+++.++++++.+
T Consensus 4 ~~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~ 74 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGE 74 (499)
T ss_pred ccEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 469999999999999999999 899998765443 22223579999999999999999999999999
Q ss_pred cceEEEee
Q 017527 95 VRAVCLAV 102 (370)
Q Consensus 95 v~~IgIgv 102 (370)
|.+|||.-
T Consensus 75 iaaIGITN 82 (499)
T COG0554 75 IAAIGITN 82 (499)
T ss_pred eEEEEeec
Confidence 99999864
|
|
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.42 Score=49.92 Aligned_cols=103 Identities=19% Similarity=0.191 Sum_probs=70.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-ccccCHHH----HHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-~~~~~~~~----~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||||.-...+.+++++. +|+++......... ....-|+. =.++|..+++++++++++++.+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 6999999999999999986 56788766532110 01112333 3566888999999999999999999
Q ss_pred EEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 98 IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
|+++. ||.-.. .-.....+-|...++ +|+.-.|--.+
T Consensus 73 iav~~gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~a 111 (535)
T PRK09605 73 VAFSQGPGLGPCLRVVATAARALALSLD--VPLIGVNHCVA 111 (535)
T ss_pred EEECCCCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHHH
Confidence 99875 443211 123456777888887 89876665544
|
|
| >PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=57.51 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=49.2
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
||||+|||+|.++++|. +..++...+.++. ++....-+.+.+++++.+.+.++++|..|-+|.
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gT 64 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTT------PDDPAEGILEALDALLEESGIDPSDIDRVRHGT 64 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCC------CcCHHHHHHHHHHhhhcccCCChhhCcEEEecc
Confidence 89999999999999998 4478888887764 234456677777788877777677888888775
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.44 Score=46.25 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=78.9
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc--------cccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH--------NSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~--------~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||--...+.+++++. +++++...+...... .......=.++|..++++++++++.+++++.
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 57888888888999975 477887654321100 0012344567788899999999999999999
Q ss_pred eEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC--C--CCCeEEEEEcccc
Q 017527 97 AVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G--KLHGCVLIAGTGT 157 (370)
Q Consensus 97 ~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~--g--~~~~v~l~~GTGi 157 (370)
+|+++. ||.-.. .-.....+-|...++ +|++-.|.-.+-+++..+ + ...++++++..|.
T Consensus 72 ~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~ 136 (305)
T TIGR00329 72 LIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGH 136 (305)
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCc
Confidence 999987 664322 112356777777777 898877776654333322 3 3455555543365
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PRK13324 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.063 Score=50.92 Aligned_cols=127 Identities=15% Similarity=0.108 Sum_probs=78.1
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|.||+|-|++++++++. ++++...+.++.... ...++ +...+..++...+....++..+.+ +
T Consensus 2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de----~~~~l~~~~~~~~~~~~~i~~vii--s 64 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQ----MGVFLRQALRENSVDLGKIDGCGI--S 64 (258)
T ss_pred EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHH----HHHHHHHHHHhcCCCccCCCeEEE--E
Confidence 789999999999999986 456665555442221 23344 444555566655555556776555 4
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeCh-----------------HHHHHHhhc--CCCCCeEEEEEcccceeeeecc
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHND-----------------ALAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~ND-----------------a~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~ 164 (370)
.++ |+-...+.+.+.+.|+. .|++|..+ -.++++++. +...+.+++-+||=+---.+..
T Consensus 65 SVv-P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~T~d~v~~ 142 (258)
T PRK13324 65 SVV-PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTATTFDLVTK 142 (258)
T ss_pred eCc-chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcC
Confidence 666 76667787777777862 35555322 223344432 3235789999999874433445
Q ss_pred CCceE
Q 017527 165 DGRDA 169 (370)
Q Consensus 165 dG~l~ 169 (370)
+|+..
T Consensus 143 ~g~~~ 147 (258)
T PRK13324 143 DKKYL 147 (258)
T ss_pred CCeEE
Confidence 66554
|
|
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.46 Score=46.48 Aligned_cols=99 Identities=16% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc-cccCH----HHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH-NSVGE----DAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~-~~~~~----~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
||||--...+.+++++. ++++...+...... ....| ..-.+.|..+++++++++++++.++.+|+
T Consensus 1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia 70 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA 70 (323)
T ss_pred CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57887777788888875 55776554321110 00112 23346688999999999999999999999
Q ss_pred Eee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHH
Q 017527 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 100 Igv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
++. ||.... .-.....+.|...++ +|+.-.|=-.
T Consensus 71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~~ 106 (323)
T PRK14878 71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHCI 106 (323)
T ss_pred EecCCCcccchHHHHHHHHHHHHHhC--CCccccchHH
Confidence 987 664321 112355777777787 7876555443
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0046 Score=64.99 Aligned_cols=73 Identities=15% Similarity=0.112 Sum_probs=55.5
Q ss_pred CCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC----C-c----cccCHH----------HHHHHHHH
Q 017527 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----N-H----NSVGED----------AARETIEK 79 (370)
Q Consensus 19 ~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~----n-~----~~~~~~----------~~~~~l~~ 79 (370)
+...|+||||+|+|++|++++|. +|+++........ . . ...+++ ..++.+..
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~ 75 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDL 75 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHH
Confidence 34569999999999999999998 8999988766532 0 0 012333 56699999
Q ss_pred HHHHHHHHcCCCccCcceEEEe
Q 017527 80 VMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 80 ~i~~~l~~~~~~~~~v~~IgIg 101 (370)
+++++. +.+.+.++|.+|+++
T Consensus 76 ~l~~l~-~~~~~~~~I~aIs~s 96 (556)
T PLN02669 76 LLQKLA-KEKFPFHKVVAISGS 96 (556)
T ss_pred HHHHHH-HcCCChhhEEEEEec
Confidence 999987 566677789988887
|
|
| >PRK13326 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.085 Score=50.16 Aligned_cols=122 Identities=15% Similarity=0.115 Sum_probs=73.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+.|.||+|-|++++++++. ++++...+.++... .+.++....+.. +.+. ++..+.++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~~~--~t~de~~~~l~~---------~~~~-~i~~viis 63 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTKLD--LSFDELYSFLKE---------KFDF-KVNQVFVS 63 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccCCC--CCHHHHHHHHhc---------CCCC-CCCEEEEE
Confidence 36899999999999999997 56766555554332 355654444333 2332 46665544
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEE--------------------eChHHHHHHhhc--CCCCCeEEEEEccccee
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYV--------------------HNDALAALASGT--MGKLHGCVLIAGTGTIA 159 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V--------------------~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g 159 (370)
.++ |.....+.+.+++.|+. .|+++ -.|=.+++++++ ++..+.+++-+||=+--
T Consensus 64 --SVv-p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~T~ 139 (262)
T PRK13326 64 --SVV-PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTACTI 139 (262)
T ss_pred --eCc-ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCceEE
Confidence 555 55666777777776652 23333 234344555543 44357899999998743
Q ss_pred eeeccCCceE
Q 017527 160 YGFTEDGRDA 169 (370)
Q Consensus 160 ~gii~dG~l~ 169 (370)
--+..+|+..
T Consensus 140 D~V~~~g~~l 149 (262)
T PRK13326 140 FAVSRQDGIL 149 (262)
T ss_pred EEEcCCCcEE
Confidence 3333566553
|
|
| >PRK12440 acetate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.039 Score=55.19 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=89.1
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCCCCCCc----CCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCCh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPIL----GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSP 221 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg~G~ll----gd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~ 221 (370)
+.|++.+|.|+--+ -+.||+..- .-|++.+- +...+. .++ .+...+.+. + -+.
T Consensus 202 ~~Iv~HLG~G~Si~-Ai~~GksvDtsmG~tPl~GL~MgtRsG~------------------idp-~vv~~l~~~-~-~s~ 259 (397)
T PRK12440 202 SFISVHLGNGASVC-AIKNGQSVDTSMGFTPLSGLMMGTRCGD------------------LDP-GIIEFLLKK-G-WSQ 259 (397)
T ss_pred CEEEEEeCCCcEee-eeeCCEEEEcCCCCCCCCCCCCCCcCCC------------------CCH-HHHHHHHHc-C-CCH
Confidence 78999999998444 558999754 33444442 211111 111 122223332 3 244
Q ss_pred hhHHHHhccCCC---hHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 222 DELIGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 222 ~~l~~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+++....+++.. ...+....++|.+.+++||+.|+-+++-++..+.+.|.++...++- .+.||+.||+.+
T Consensus 260 ~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~g-------vDaiVFTgGIGe 332 (397)
T PRK12440 260 EKVFNSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALDS-------LDGIIFTGGIGE 332 (397)
T ss_pred HHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCcccc
Confidence 444444443220 0111224578888889999999999999999999999999999972 799999999998
Q ss_pred CcccccchHHHHHHHHh
Q 017527 299 ANRRWDIGREVVKCILR 315 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~~ 315 (370)
....+ .+.+.+.+.-
T Consensus 333 n~~~v--r~~i~~~l~~ 347 (397)
T PRK12440 333 NSLPI--RREILKNLKL 347 (397)
T ss_pred CcHHH--HHHHHhhhhh
Confidence 76544 7777777654
|
|
| >PRK13320 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.1 Score=49.08 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=66.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|.||+|.|++++++++. ++++...+.+ .++....+ .++++..+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l----~~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESL----EKLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHH----HHHHHHCC----CCCEEEEEe
Confidence 6999999999999999986 5666544432 12222223 33444332 466666655
Q ss_pred cCCCChhhHHHHHHHHHhhCC-------CCceEEEeC--------hHHHHHHhhc--CCCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPTDQQRILNWLRDIFP-------GNVRLYVHN--------DALAALASGT--MGKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~-------~~~pV~V~N--------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~d 165 (370)
-.+.. ...+.+.+++.|+ ...++.+.. |=.++++++. +...+.+++-+||-+----+..|
T Consensus 57 Vvp~~---~~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~Tid~v~~~ 133 (244)
T PRK13320 57 VVPLA---EEAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAITYDVLDSE 133 (244)
T ss_pred cccch---HHHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcCC
Confidence 44432 3456666666542 001222222 2224444432 33357899999999854434456
Q ss_pred CceE
Q 017527 166 GRDA 169 (370)
Q Consensus 166 G~l~ 169 (370)
|+..
T Consensus 134 g~~~ 137 (244)
T PRK13320 134 GVYL 137 (244)
T ss_pred CcEE
Confidence 6654
|
|
| >TIGR03722 arch_KAE1 universal archaeal protein Kae1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.86 Score=44.52 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=64.9
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC-CccccCHH----HHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGED----AARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~-n~~~~~~~----~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
||||--...+.+++++. +++++...+.... .....-|+ .=.++|-.+++++++++++++.++.+|+
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57888767788888885 4677765443211 11111122 3355688889999999999999999999
Q ss_pred Eee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 100 Igv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
++. ||.... .-...+.+.|...++ +|+.-.|=-.+
T Consensus 72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~a 108 (322)
T TIGR03722 72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHCVA 108 (322)
T ss_pred EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhHHH
Confidence 886 554321 112355777777887 78776654433
|
This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. |
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=1 Score=44.23 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc--------ccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--------SVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~--------~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+||||--...+.+++++. +++++........... ......-.+.|..++++++++++.++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 5899999877888999986 4578765542211000 0112345778899999999999999999
Q ss_pred cceEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeCh
Q 017527 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHND 133 (370)
Q Consensus 95 v~~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~ND 133 (370)
+.+|+++. ||.-.. .-.....+-|...++ +|++-.|=
T Consensus 73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h 111 (332)
T PRK09604 73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNH 111 (332)
T ss_pred CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecC
Confidence 99999987 665322 112356777777887 78765554
|
|
| >TIGR00016 ackA acetate kinase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.064 Score=53.83 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+++||+.|..+++-++..+.+.|.++...++ | .-+.||+.||+.+..+.+ .+.+.+.+.
T Consensus 287 D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~--G----~vDaiVFTGGIGEns~~v--r~~i~~~l~ 353 (404)
T TIGR00016 287 DLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLE--G----NLDAIVFTGGIGENAATV--RELVLEALE 353 (404)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEEcCccccCCHHH--HHHHHhhhh
Confidence 458888888899999999999999999999999999997 0 148999999999766554 666666664
|
Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate. |
| >TIGR00671 baf pantothenate kinase, type III | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.17 Score=47.45 Aligned_cols=118 Identities=18% Similarity=0.102 Sum_probs=70.5
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
|.||+|-|++++++++. ++++...+.++... .+.++....+...+.+ ++..+.+ +.
T Consensus 2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~~~--~t~de~~~~l~~~~~~----------~i~~v~v--sS 57 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATNLM--KTYDEHSEFLKELFGK----------SLNKAFI--SS 57 (243)
T ss_pred EEEEECCCcEEEEEEEC----------CEEEEEEEecCCCc--cChHHHHHHHHHHHHh----------hCCEEEE--EE
Confidence 68999999999999986 56666656555433 3556655555444433 2444433 45
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEE------------------EeChHHHHHHhhc--CCCCCeEEEEEcccceeeeecc
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLY------------------VHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~------------------V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~ 164 (370)
++ |+-...+++.+++.|+. .|++ +--|-.+++++++ ++ .+.+++-+||=+----+..
T Consensus 58 Vv-p~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~-~~~lViD~GTA~Tid~v~~ 134 (243)
T TIGR00671 58 VV-PELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYG-FNVVVVDAGTALTIDLVDQ 134 (243)
T ss_pred cc-CChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcC-CCEEEEEcCCceEEEEEcC
Confidence 55 55556777777777652 2332 2234444555543 43 4788999999874332333
Q ss_pred CCceE
Q 017527 165 DGRDA 169 (370)
Q Consensus 165 dG~l~ 169 (370)
+|+..
T Consensus 135 ~g~~~ 139 (243)
T TIGR00671 135 EGKFL 139 (243)
T ss_pred CCeEE
Confidence 66554
|
This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli. |
| >PRK00180 acetate kinase A/propionate kinase 2; Reviewed | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.1 Score=52.43 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=85.2
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCC----CCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCCh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAG----AGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSP 221 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg----~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~ 221 (370)
+.|+..+|.|+-- .-+.+|+..- .-+ =|.+.+... |..++..+... .+.-+ -+.
T Consensus 203 ~lIvaHLG~GaSi-~Ai~~GrsvDtsmG~tpleGl~m~tRs------------------G~ldp~~v~~l-~~~~~-~s~ 261 (402)
T PRK00180 203 NLITCHLGNGASI-AAIKNGKSVDTSMGFTPLEGLVMGTRS------------------GDIDPAIIPYL-MEKLG-MSV 261 (402)
T ss_pred CEEEEEeCCCcee-eeeeCCEEEEeCCCCCcccCCCCCCCC------------------CCCChHHHHHH-HHhcC-CCH
Confidence 7899999999844 4558999753 111 222222111 11112222111 11112 144
Q ss_pred hhHHHHhccCCCh---HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 222 DELIGWTYVDPSW---ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 222 ~~l~~~~~~~~~~---~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+++....+++... ..+....++|.+.+.+||+.|..+++-++..+++.|.++...|.- .-+.||+.||+.+
T Consensus 262 ~el~~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~g------~vDaiVfTGGIgE 335 (402)
T PRK00180 262 DEIDNLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALNG------RLDAIVFTAGIGE 335 (402)
T ss_pred HHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCEEEEcCcccc
Confidence 4555544432210 111224578888888999999999999999999999999999930 2689999999997
Q ss_pred CcccccchHHHHHHHH
Q 017527 299 ANRRWDIGREVVKCIL 314 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~ 314 (370)
..+.+ .+.+.+.+.
T Consensus 336 ~s~~l--r~~I~~~l~ 349 (402)
T PRK00180 336 NSALV--REKVLEGLE 349 (402)
T ss_pred CCHHH--HHHHHhhhh
Confidence 66554 666666653
|
|
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.029 Score=57.75 Aligned_cols=77 Identities=21% Similarity=0.243 Sum_probs=56.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
..+++|||+|.|++|++++|.. +++++..++.+.. .....+|.++++++.++|+++.+.....+..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3589999999999999999931 6777766554321 1222579999999999999999887766555
Q ss_pred cce-EEEeecCC
Q 017527 95 VRA-VCLAVSGV 105 (370)
Q Consensus 95 v~~-IgIgvpG~ 105 (370)
+.+ +|+|+.+-
T Consensus 77 ~~~~~~igv~~q 88 (516)
T KOG2517|consen 77 VVGATCIGVVNQ 88 (516)
T ss_pred ccccEEEEEEec
Confidence 544 66666653
|
|
| >PRK07157 acetate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.13 Score=51.67 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+.+.+||+.|.-+++-++..+++.|.++...++ | ..+.||+.||+.+....+ .+.+.+.+
T Consensus 280 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~--G----~vDaiVFTgGIGen~~~v--r~~i~~~l 345 (400)
T PRK07157 280 DLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIG--K----KIDAIVFTAGVGENSAFV--RELVINKI 345 (400)
T ss_pred cHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEECCccccCcHHH--HHHHHhhc
Confidence 457888888999999999999999999999999999997 0 148999999999876443 56666555
|
|
| >PRK12379 propionate/acetate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.13 Score=51.63 Aligned_cols=66 Identities=18% Similarity=0.198 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+++||+.|..+++-++..+.+.|.++...++ .-+.||+.||+.+..... ++.+.+.+.
T Consensus 278 D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~-------~vDaIVFTGGIGen~~~v--R~~i~~~L~ 343 (396)
T PRK12379 278 DLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLH-------RLDGIIFTGGIGENSSLI--RRLVMEHLA 343 (396)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCccccCcHHH--HHHHHhhhh
Confidence 457888888999999999999999999999999999987 279999999999876553 666666654
|
|
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.023 Score=56.65 Aligned_cols=73 Identities=18% Similarity=0.202 Sum_probs=48.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRL-SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l-~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.+|..+..+|-+.. .|+.-..+.++.-+.+++..+ .+ .+.|++.||+++. +-+ ...+++.+....+..
T Consensus 344 SEVIslla~G~~re-DIaAGL~~SIA~Rv~s~l~r~~~i-------~~~VvftGGvA~N-~gv--v~aLe~~L~~~~~~~ 412 (432)
T TIGR02259 344 AELRDRLALGDKRE-DILAGLHRAIILRAISIISRSGGI-------TDQFTFTGGVAKN-EAA--VKELRKLIKENYGEV 412 (432)
T ss_pred HHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHhcccCC-------CCCEEEECCcccc-HHH--HHHHHHHHccccCCC
Confidence 35777777886544 455555566666666676666 32 3589999999864 454 788888887655555
Q ss_pred eeeCC
Q 017527 321 VPIRP 325 (370)
Q Consensus 321 ~~~~p 325 (370)
++..|
T Consensus 413 ~V~Vp 417 (432)
T TIGR02259 413 QINID 417 (432)
T ss_pred eEecC
Confidence 54444
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PRK12397 propionate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.18 Score=50.57 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=55.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..++|.+.+.+||+.|+.+++-++..+.+.|.++...++ .-+.||+.||+.+..... ++.+.+.+.
T Consensus 282 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lg-------gvDaiVFTGGIGEns~~v--R~~ic~~L~ 347 (404)
T PRK12397 282 DYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMG-------GLDALVFTGGIGENSARA--RSAVCHNLQ 347 (404)
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCchhhCCHHH--HHHHHhhhh
Confidence 458888888999999999999999999999999998876 268999999999976553 666666664
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.4 Score=43.43 Aligned_cols=63 Identities=10% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC
Q 017527 243 VVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 243 ~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p 318 (370)
++.+.+.+ ++.+ .|+.+...+.+.++.+..... +|+.|+|.|.++... .| .+.+++.+.+.+|
T Consensus 227 e~~~~~~e-~~~~--a~ea~~E~i~k~V~~l~~~~~-------~~~~IilSGr~~~~~-~~--~~~l~~~l~~~~~ 289 (343)
T PF07318_consen 227 EFAKRLKE-DEKC--AWEAMIESIVKAVASLLASVP-------DPDEIILSGRFSRIP-EF--RKKLEDRLEDYFP 289 (343)
T ss_pred HHHHhhhc-chhH--HHHHHHHHHHHHHHHHhcccC-------CCCEEEEeccccccH-HH--HHHHHHHHHhhcc
Confidence 44444433 3333 677777778888777766652 378899999999654 44 8899999999888
|
The function of this family is unknown. |
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.7 Score=40.63 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=72.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc--c----cCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN--S----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~--~----~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.+||||--...+.+++++. +++++...+..-.... . .-...=.++|..+++++++++++...+|.
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did 72 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITPSDIS 72 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 5899999999999999996 5778876543111110 0 01233467788899999999999999999
Q ss_pred eEEEee-cCCCC-hhhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 97 AVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 97 ~IgIgv-pG~~~-~~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
+|+++. ||... -.-.....+-|...++ +|++=.|-..+
T Consensus 73 ~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~Hleg 112 (345)
T PTZ00340 73 LICYTKGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVA 112 (345)
T ss_pred EEEEecCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHH
Confidence 999876 55321 1123466777888887 89988887665
|
|
| >COG4020 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=3.9 Score=38.53 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=50.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
-.++.+.+.+|.. |+-.++..+...+.-|+.+.-... .-+.|+|+|++..-..++|+.+.+.+.+.+
T Consensus 231 rEEli~~~~k~ek-arlaldtlal~vamEIagL~~~~~-------~~d~v~laGsvg~~~ep~dv~~ri~~~v~~ 297 (332)
T COG4020 231 REELIQRYGKGEK-ARLALDTLALLVAMEIAGLLMVVY-------GCDGVVLAGSVGGDREPMDVLKRIKSKVFN 297 (332)
T ss_pred HHHHHHHhcCChh-hhHHHHHHHHHHHHHHhhhhceec-------CCceEEEecccccccchhhHHHHHHHHHHH
Confidence 3677888888777 888888888888888877663332 135699999999888787777777776655
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.2 Score=44.89 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=50.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
++|+|+|.|++++++.... .++.-+++.....++. +-.-.+.+.+.+.|.++++++-+.++. ++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~-----~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVD-----EDGEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSVYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEc-----CCCCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEEEE
Confidence 4799999999999998751 0012356666555432 111135678888888888887776665 4678889
Q ss_pred eecCCC
Q 017527 101 AVSGVN 106 (370)
Q Consensus 101 gvpG~~ 106 (370)
++||..
T Consensus 73 ~i~g~~ 78 (187)
T smart00842 73 GISGRH 78 (187)
T ss_pred EEcCCc
Confidence 999974
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >PRK13322 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.1 Score=42.13 Aligned_cols=117 Identities=15% Similarity=0.070 Sum_probs=66.0
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|.||+|-|++++++++. .++++.+.+ .. .+.++....+.. + +...+..+.++
T Consensus 2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~---~~---~t~~~~~~~l~~----~------~~~~i~~v~vs-- 54 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA---HL---DSPAELLLGLAN----L------ASLAPTRCRIV-- 54 (246)
T ss_pred EEEEEeCCCcEEEEEEcC---------CCchhhhcc---cc---CCHHHHHHHHHh----C------CccCCCEEEEE--
Confidence 789999999999999985 355443222 11 134444443321 1 22246665554
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeChHH-------------------HHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL-------------------AALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~-------------------aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
.++.++....+++.+++.|+. .|.++..+.. ++++++. ++ .+.+++-+||=+---.+
T Consensus 55 SV~p~~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~-~~~lViD~GTA~TiD~v 132 (246)
T PRK13322 55 SVLSEEETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAK-NACLVIDCGTAVTIDLV 132 (246)
T ss_pred eCCCHHHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcC-CCEEEEEcCCeeEEEEE
Confidence 555445566888888887762 2444544433 2333332 32 35778888888743323
Q ss_pred ccCCceE
Q 017527 163 TEDGRDA 169 (370)
Q Consensus 163 i~dG~l~ 169 (370)
..+|+..
T Consensus 133 ~~~g~~~ 139 (246)
T PRK13322 133 DADGQHL 139 (246)
T ss_pred cCCCcEe
Confidence 3466554
|
|
| >TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.21 Score=48.80 Aligned_cols=125 Identities=16% Similarity=0.122 Sum_probs=76.8
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||+||||-|+|+++++. +|.+.......++-.. +.+. |.+++.+++++.+ ....++|.+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~plW~--~~~~----L~~~l~~~~~~~~----~~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYCPLWK--GNDK----LAETLKEISQDLS----SADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecCcccC--CchH----HHHHHHHHHHhcC----ccceEEEEeeh
Confidence 68999999999999987 6888776666666442 5544 3444444444332 12567888888
Q ss_pred C-C----ChhhHH-HHHHHHHhhCCCCceEE-EeChHHHH------------HHhh------c--CCCCCeEEEEEcccc
Q 017527 105 V-N----HPTDQQ-RILNWLRDIFPGNVRLY-VHNDALAA------------LASG------T--MGKLHGCVLIAGTGT 157 (370)
Q Consensus 105 ~-~----~~~~~~-~l~~~L~~~f~~~~pV~-V~NDa~aa------------~~g~------~--~g~~~~v~l~~GTGi 157 (370)
= . +..+++ .+.+.+++.|+ .|++ +.+|.... +.++ + ....|.+++=+|.=+
T Consensus 62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT 139 (318)
T TIGR03123 62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT 139 (318)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence 4 2 233333 68899999997 4554 46665210 0111 1 124678888777333
Q ss_pred eeeeeccCCceEe
Q 017527 158 IAYGFTEDGRDAR 170 (370)
Q Consensus 158 ~g~gii~dG~l~~ 170 (370)
-=...+.||++..
T Consensus 140 tDi~~i~~G~p~~ 152 (318)
T TIGR03123 140 TDIIPIIDGEVAA 152 (318)
T ss_pred eeeEEecCCEeee
Confidence 2345677998754
|
This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. |
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=94.28 E-value=5.7 Score=38.71 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=44.5
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCC
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG 166 (370)
.+.+++|-..+......+.+.++. ++. ..+.+.|+..+|+++.... ....+++-+|.|.--..++..+
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~~-ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~ 170 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESALS-AGA-REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLG 170 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeC
Confidence 578899987665555556565544 442 3588999999998853221 2356788899887655565333
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.18 Score=42.98 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=55.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+||+|.|..+|=+++.|. .+.+ +.......+. +....++.|.+++++ .++..|-||+
T Consensus 2 riL~lD~G~kriGiAvsd~---------~~~~-a~pl~~i~~~---~~~~~~~~l~~li~~---------~~i~~iVvGl 59 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP---------LGII-ASPLETIPRR---NREKDIEELKKLIEE---------YQIDGIVVGL 59 (135)
T ss_dssp EEEEEEECSSEEEEEEEET---------TTSS-EEEEEEEEEC---CCCCCHHHHHHHHHH---------CCECEEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC---------CCCe-EeeeEEEECC---CCchHHHHHHHHHHH---------hCCCEEEEeC
Confidence 5899999999999999998 4443 3221111111 112334445444443 4578888999
Q ss_pred cCCC----Chhh--HHHHHHHHHhhCCCCceEEEeChHH
Q 017527 103 SGVN----HPTD--QQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 103 pG~~----~~~~--~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
|=-. .+.. -..+.+.|++.|+. +||+..+.-.
T Consensus 60 P~~~~G~~~~~~~~v~~f~~~L~~~~~~-ipV~~~DEr~ 97 (135)
T PF03652_consen 60 PLNMDGSESEQARRVRKFAEELKKRFPG-IPVILVDERL 97 (135)
T ss_dssp EBBCTSSC-CCHHHHHHHHHHHHHHH-T-SEEEEEECSC
T ss_pred CcccCCCccHHHHHHHHHHHHHHHhcCC-CcEEEECCCh
Confidence 8432 2222 24788999999932 8998877543
|
The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A. |
| >PRK07058 acetate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.12 Score=51.66 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.++|. +++|+.|+.+++-++..+.+.|.++...++- -+.||+.||+.+....+ .+.+.+.+.
T Consensus 283 ~R~l~---~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg~-------vDaiVfTGGIgEns~~v--r~~i~~~l~ 344 (396)
T PRK07058 283 TRDLL---ASDAPEAREALDLFALRIAGEIARLAATLGG-------LDAVVFTAGIGEHQPAI--RAAVCERLA 344 (396)
T ss_pred HHHHh---hcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCccccCcHHH--HHHHHhhhh
Confidence 45663 3469999999999999999999999999872 78999999999766554 666666664
|
|
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=93.76 E-value=2.3 Score=40.14 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=72.8
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
.|.+|+|-|++++++.+. +++....+..+... ...++ +...+..+.+.+ ...++.++.| +
T Consensus 2 ~L~iDiGNT~~~~a~~~~----------~~~~~~~r~~t~~~--~~~de----l~~~~~~l~~~~--~~~~~~~~~i--s 61 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG----------GKVVQTWRLATEDL--LTEDE----LGLQLHNLFDGN--SVRDIDGIVI--S 61 (251)
T ss_pred eEEEEeCCCeEEEEEecC----------CeEEEEEeeccccc--ccHHH----HHHHHHHHhccc--ccccccccee--e
Confidence 689999999999999986 77777776655332 23444 333444444433 3345665554 5
Q ss_pred CCCChhhHHHHHHHHHhhCCCCceEEEeC-------------------hHHHHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 104 G~~~~~~~~~l~~~L~~~f~~~~pV~V~N-------------------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
.++ |.-...++..+++.|.- .|.++.+ |-.+++++.. +|. ..++|-+||-+---.+
T Consensus 62 svv-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~-~~vVVD~GTA~Tid~v 138 (251)
T COG1521 62 SVV-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGK-AVVVVDFGTATTIDLV 138 (251)
T ss_pred ccC-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCC-cEEEEEcCCeEEEEEE
Confidence 555 66666777777777763 3433322 3334444432 443 4788999998754444
Q ss_pred ccCCce
Q 017527 163 TEDGRD 168 (370)
Q Consensus 163 i~dG~l 168 (370)
..+|+.
T Consensus 139 ~~~~~~ 144 (251)
T COG1521 139 DEGGRY 144 (251)
T ss_pred cCCCcE
Confidence 334434
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=7.5 Score=38.04 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=49.1
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCCCeEEEEEcccceeeeeccCCceE
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
.+-|++|...+...+..+.+.++. ++. ..+.+.|+..||+++... .....+++-+|.|+--..++..|...
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~ 173 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV 173 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE
Confidence 577899987776667778776654 442 358899999999886421 22456788899998666666455544
|
|
| >PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.7 Score=38.19 Aligned_cols=120 Identities=21% Similarity=0.176 Sum_probs=63.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEE-EEEe--cCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAA--GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~-~~~~--~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+|.||+|-|++++++++. .++.. ..+. .+... ...++.... +.+.+...+ +.. +
T Consensus 1 ~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~-----~~~--v 57 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG----------DKLIDPSGRISHSTALD--SSSDELLEL----LESLLPQPK-----IDA--V 57 (206)
T ss_dssp EEEEEE-SSEEEEEEEET----------TEEEE-EEEE-EEECTT--SSHHHHHHH----HHHHHHCTT-----CGE--E
T ss_pred CEEEEECCCeEEEEEEEC----------CEEEeeeeEEEeccccc--ccHHHHHHH----HHHHhcccc-----CCc--E
Confidence 578999999999999987 34443 2222 22221 234454444 444444322 223 3
Q ss_pred eecCCCChhhHHHHHHHHHhhCCCCceEEEeC-------------------hHHHHHHhhc--CCCCCeEEEEEccccee
Q 017527 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGT--MGKLHGCVLIAGTGTIA 159 (370)
Q Consensus 101 gvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N-------------------Da~aa~~g~~--~g~~~~v~l~~GTGi~g 159 (370)
-++.++. .....+.+.+.+.++ .|.++.+ |=.++++++. + ..+.+++-+||=+--
T Consensus 58 ~isSV~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~aa~~~~-~~~~lViD~GTA~Ti 133 (206)
T PF03309_consen 58 IISSVVP-EATEQLLEALLKRFG--RPHFVKSSASKLGLKNAYDNPSQLGVDRWAAAIAARKLY-GQPCLVIDAGTATTI 133 (206)
T ss_dssp EEEESSG-HHHHHHHHHHHHHCS----EEES-TTSCCSSEESSSSGGGS-HHHHHHHHHHHHHH-TSSEEEEEESSEEEE
T ss_pred EEEEcCC-HHHHHHHHHHHHHhC--CCEEEEccccccCccccCCChhHhhHHHHHHHHHHHHhc-CCCEEEEEcCCeEEE
Confidence 3445553 344455666666554 3444331 3344555442 3 468999999999854
Q ss_pred eeeccCCceEe
Q 017527 160 YGFTEDGRDAR 170 (370)
Q Consensus 160 ~gii~dG~l~~ 170 (370)
-.+..+|+...
T Consensus 134 d~v~~~g~~~G 144 (206)
T PF03309_consen 134 DVVDADGQHLG 144 (206)
T ss_dssp EEEETTSEEEE
T ss_pred EEEcCCCeEEE
Confidence 43334666543
|
CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A. |
| >COG0282 ackA Acetate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.31 Score=48.36 Aligned_cols=138 Identities=16% Similarity=0.143 Sum_probs=84.7
Q ss_pred CeEEEEEcccceeeeeccCCceEe-eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCC---chhHHHHHHHcCCCChh
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPD---TMLTSNILSTLELSSPD 222 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~~-aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~---~~l~~~~~~~~~~~s~~ 222 (370)
+.|...+|.|..-+ -+.+|+..- .=|+-.+-| .-+ |+++. .++...+.+..+ -+.+
T Consensus 201 ~~I~~HLGNGASic-AiknGkSvDTSMGfTPLeG-----l~M-------------GTRsGdiDP~ii~~l~~~~~-~s~~ 260 (396)
T COG0282 201 NLITCHLGNGASIC-AIKNGKSVDTSMGFTPLEG-----LMM-------------GTRSGDIDPGIILYLMEQEG-MSAE 260 (396)
T ss_pred CEEEEEecCchhhh-hhhCCeeeccCCCCCcccc-----eec-------------cCCCCCCChHHHHHHHHhcC-CCHH
Confidence 67888899997444 458998743 111111100 000 11111 123334444444 2455
Q ss_pred hHHHHhccCC---ChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccC
Q 017527 223 ELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEA 299 (370)
Q Consensus 223 ~l~~~~~~~~---~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~ 299 (370)
++....++.. .-..+....++|.+++.+|++ |+-.++-+...+++.|......++- .+.||+.||+.+.
T Consensus 261 ~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~g-------lDaiVFTaGIGEN 332 (396)
T COG0282 261 EIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGG-------LDALVFTAGIGEN 332 (396)
T ss_pred HHHHHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEEeCccccC
Confidence 5554444221 011123346889999999977 9999999999999999999999983 7999999999997
Q ss_pred cccccchHHHHHHHH
Q 017527 300 NRRWDIGREVVKCIL 314 (370)
Q Consensus 300 ~~~~~l~~~v~~~l~ 314 (370)
.... ++.+.+.+.
T Consensus 333 s~~i--R~~v~~~L~ 345 (396)
T COG0282 333 SALV--RELVCEGLA 345 (396)
T ss_pred cHHH--HHHHHhhhh
Confidence 6554 666666663
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.24 Score=50.03 Aligned_cols=71 Identities=23% Similarity=0.220 Sum_probs=46.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc-------------ccC-H----HHHHHHHHHHHHHH
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-------------SVG-E----DAARETIEKVMADA 84 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~-------------~~~-~----~~~~~~l~~~i~~~ 84 (370)
|-++||+|+|.+.+.++|+. +|+++.......+... +.+ . ..+++.|.++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l 73 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEEL 73 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECC--------CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999983 6999988765322210 001 1 23567777888888
Q ss_pred HHHcCCCccCcceEEEe
Q 017527 85 LLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 85 l~~~~~~~~~v~~IgIg 101 (370)
+.++++++++|..+.|.
T Consensus 74 ~~~~gi~~~~I~~i~i~ 90 (412)
T PF14574_consen 74 LEKAGISPEDIYEIVIV 90 (412)
T ss_dssp HHHHT--GGGEEEEEEE
T ss_pred HHHcCCCHHHeEEEEEE
Confidence 88889999999877664
|
|
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=93.42 E-value=8.2 Score=37.60 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=68.4
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC----cc----ccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN----HN----SVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n----~~----~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
+|+||--...+.+++++. +.+++........+ .. ......-.+.|..+|++++++++...++|
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 589999999999999986 33477664432100 00 01134456778899999999999999999
Q ss_pred ceEEEeecCCCChh---hHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 96 RAVCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 96 ~~IgIgvpG~~~~~---~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
.+|+++. ||-... -.....+-|...++ +|++-.|--.+
T Consensus 72 d~iav~~-GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~a 112 (314)
T TIGR03723 72 DAIAVTA-GPGLIGALLVGVSFAKALALALN--KPLIGVNHLEG 112 (314)
T ss_pred CEEEEec-CCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHH
Confidence 9999886 443221 13456677777776 89887766554
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.6 Score=47.37 Aligned_cols=76 Identities=16% Similarity=0.288 Sum_probs=51.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
.+++|+|||.|++++++.... .++.-+++.....++. +-.-.+.+++.+.|.++++++-..++. ++..|
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~-----~~~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~~v 79 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVL-----PDGMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QISSV 79 (420)
T ss_pred CEEEEEEcccceEEEEEEEEc-----CCCCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 489999999999999877641 0112356666665532 111235778888888888887766664 57778
Q ss_pred EEeecCC
Q 017527 99 CLAVSGV 105 (370)
Q Consensus 99 gIgvpG~ 105 (370)
.+++||.
T Consensus 80 ~v~i~g~ 86 (420)
T PRK09472 80 YLALSGK 86 (420)
T ss_pred EEEecCc
Confidence 8888887
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.6 Score=43.20 Aligned_cols=93 Identities=20% Similarity=0.281 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 74 ~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
.+.++.+++.++.+ .+..+.+ ..+-+..|-...+.....+.+.|-+.|+. ..+++.+++.+++++. |..++++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (373)
T smart00268 74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYAS--GRTTGLVID 149 (373)
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHhC--CCCEEEEEe
Confidence 44555666666652 3443322 34667788777666777888888888872 2488999999988753 567899999
Q ss_pred EcccceeeeeccCCceEe
Q 017527 153 AGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~~ 170 (370)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~v~pv~~G~~~~ 167 (373)
T smart00268 150 SGDGVTHVVPVVDGYVLP 167 (373)
T ss_pred cCCCcceEEEEECCEEch
Confidence 999976666677898753
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.20 E-value=9.3 Score=37.61 Aligned_cols=122 Identities=17% Similarity=0.219 Sum_probs=78.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec----CCCccccCHH----HHHHHHHHHHHHHHHHcCCCccC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG----CSNHNSVGED----AARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~----~~n~~~~~~~----~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+|||+.--..|-+++++. +. +++..... ......+-|+ .=.++|..+|++++++++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 5899999999999999986 23 55433221 1111111133 33677888999999999999889
Q ss_pred cceEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CC-CCCeEEEEEccc
Q 017527 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTG 156 (370)
Q Consensus 95 v~~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g-~~~~v~l~~GTG 156 (370)
|.+|++.. ||..-. .-.....+.|.-.++ .|++=.|-..+=+.+.. .+ ..+.+.+.+..|
T Consensus 72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGG 136 (342)
T COG0533 72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVSGG 136 (342)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEecC
Confidence 99999864 555421 123466777777776 89998888776443332 22 445665554434
|
|
| >PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway | Back alignment and domain information |
|---|
Probab=93.04 E-value=3 Score=41.21 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
-.|..++.-.+.-+|+.........+. ..||++|.....++.. +..+..++.-
T Consensus 262 Dia~sll~mv~~nIg~la~l~A~~~~~--------~~I~f~G~~~~~~~~~--~~~l~~a~~~ 314 (341)
T PF03630_consen 262 DIAKSLLNMVSNNIGQLAYLHAKIHGV--------KRIVFGGSFIRNNPIT--MRTLSYAINF 314 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEEESGGGTSSCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeccccCCHHH--HHHHHHHHHH
Confidence 457788888888888888888888885 8999999999877654 5666656544
|
CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D. |
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.56 Score=46.58 Aligned_cols=72 Identities=25% Similarity=0.358 Sum_probs=47.5
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
++|+|||.+++++++..... ++ +++.....++. +-.-.+.+.+.+.|.++++++-+.++. ++..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~-------~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~---~i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLE-------DGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGC---EIRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEcC-------CCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 68999999999999886510 23 45555554432 111234677777777777777666665 45667
Q ss_pred EEeecCC
Q 017527 99 CLAVSGV 105 (370)
Q Consensus 99 gIgvpG~ 105 (370)
.+++||.
T Consensus 72 ~~~v~g~ 78 (371)
T TIGR01174 72 IVSISGA 78 (371)
T ss_pred EEEEccc
Confidence 7888774
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK13331 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.91 E-value=4.8 Score=38.02 Aligned_cols=115 Identities=15% Similarity=-0.029 Sum_probs=66.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|.||+|-|++++++++. .+++...+ +... ...+ +..++...+....++..+.++
T Consensus 8 ~~L~iDiGNT~~~~g~f~~----------~~~~~~~r--t~~~--~t~d---------~~~~l~~~~~~~~~i~~~iis- 63 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG----------ETLVKTWD--TPHL--DESI---------IQLLLPGQTLLIVAPNPLVIA- 63 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC----------CEEEEEEE--cCCc--chHH---------HHHHHHHcCCCccccCEEEEE-
Confidence 6899999999999999986 45655433 2221 1222 555666666666677766544
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceE------------EEeChHHHHHHhhc--CCCCCeEEEEEcccceeeeeccCCce
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV------------~V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
.++. .-...+ ++.|+. .|+ .+--|=.++++++. ++ .+.+++-+||=+---.+..+|+.
T Consensus 64 -SVVP-~~~~~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~-~~~iVID~GTA~T~D~V~~~g~~ 135 (251)
T PRK13331 64 -SVVP-QQTELW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYG-FPCLVIDAGTALTFTGVDSDRTL 135 (251)
T ss_pred -ecCc-cHHHHH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhC-CCEEEEECCCceEEEEEcCCCcE
Confidence 3432 222222 333331 232 34445555555543 43 57888999998743333356665
Q ss_pred E
Q 017527 169 A 169 (370)
Q Consensus 169 ~ 169 (370)
.
T Consensus 136 ~ 136 (251)
T PRK13331 136 V 136 (251)
T ss_pred E
Confidence 4
|
|
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.46 Score=54.46 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=35.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l 85 (370)
..|.||||+|||.|.++++|. ++.-+...+.+++.+. ...+.+++-|.+++++++
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~ 62 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVT 62 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHh
Confidence 469999999999999999986 4442333444542222 123456666766666553
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=11 Score=36.91 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=48.2
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCCceEe
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
.+.|++|...+......+.+.++. ++. -.+.+.|+..||+++.... ....+++=+|.|+--..++..|.+..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~ 171 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQ-AGA-KKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVT 171 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEE
Confidence 577888887665555566666654 442 3578999999998864221 13456777898887777777776654
|
|
| >PLN02902 pantothenate kinase | Back alignment and domain information |
|---|
Probab=92.61 E-value=19 Score=39.69 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 252 D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
.-.|..++.-...-+|+.........+. ..||++|.....++.- ++.+..++.
T Consensus 320 eDiarSLL~mIs~NIGqiA~L~A~~~~i--------krIvF~G~fIr~h~~t--m~~ls~Ai~ 372 (876)
T PLN02902 320 EDISLSLLRMISYNIGQISYLNALRFGL--------KRIFFGGFFIRGHAYT--MDTISFAVH 372 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEecceecCCcch--HHHHHHHHH
Confidence 3567788888888888887777777775 8899999999888765 777877775
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.62 Score=43.94 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=51.2
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
..++|+||||.+++++..|. +-..+.....|-. . ..+. |.+.+.++..+ .++..+|+-
T Consensus 3 ~kilGiDIGGAntk~a~~DG---------~~~~~d~~YlPMW-k---~k~r----L~~~Lkei~~k-----~~~~~vgvv 60 (330)
T COG1548 3 MKILGIDIGGANTKIASSDG---------DNYKIDHIYLPMW-K---KKDR----LEETLKEIVHK-----DNVDYVGVV 60 (330)
T ss_pred ceEEEeeccCccchhhhccC---------CeeeeeEEEeccc-c---chhH----HHHHHHHHhcc-----CCcceeEEE
Confidence 36899999999999999765 2222333443322 1 2344 44444444332 245566666
Q ss_pred ecCC-CC----hh-hHHHHHHHHHhhCCCCceEEEeC
Q 017527 102 VSGV-NH----PT-DQQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 102 vpG~-~~----~~-~~~~l~~~L~~~f~~~~pV~V~N 132 (370)
+.|- .| .. .-..+.+..++.|+ +||++.|
T Consensus 61 MTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v~ 95 (330)
T COG1548 61 MTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVVD 95 (330)
T ss_pred eeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEEe
Confidence 6663 22 11 22468889999998 8977543
|
|
| >PRK00109 Holliday junction resolvase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.34 E-value=1.1 Score=38.41 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+||+|.|.-++=+++.|. .+.+..-. +....+ .....+.|.+ ++++ .++..|-||
T Consensus 5 ~iLalD~G~kriGvAv~d~---------~~~~a~pl~~i~~~~-----~~~~~~~l~~----~i~~-----~~i~~iVvG 61 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP---------LGGTAQPLETIKRNN-----GTPDWDRLEK----LIKE-----WQPDGLVVG 61 (138)
T ss_pred cEEEEEeCCCEEEEEEecC---------CCCEEcCEEEEEcCC-----CchHHHHHHH----HHHH-----hCCCEEEEe
Confidence 5999999999999999987 45443222 111111 1122444444 4443 357789999
Q ss_pred ecCCCC----hhh--HHHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 102 VSGVNH----PTD--QQRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 102 vpG~~~----~~~--~~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
+|=-.+ +.. -..+.+.|++.|+ +||+..+.-...
T Consensus 62 lP~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT 101 (138)
T PRK00109 62 LPLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLST 101 (138)
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCH
Confidence 986432 211 1378888988887 899888776543
|
|
| >PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.2 Score=38.73 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=48.0
Q ss_pred cEEEEEEcCcc----ceEEEEEeCCCCCCCCCCCCCeEEEEEe-cCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 22 EVILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAA-GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 22 ~~vlGVDiGgT----~i~~~l~d~~~~~~~~~~~g~il~~~~~-~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
..|+++.-|.. .+.++++|. +|+++...+. ...... ...++..++|.+.|.+ . +..
T Consensus 5 ~rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~-~~~~~~~~~l~~~i~~----~-----kP~ 65 (150)
T PF14639_consen 5 PRVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDR-ERKEEDMERLKKFIEK----H-----KPD 65 (150)
T ss_dssp --EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-S-S-SHHHHHHHHHHHHH----H-------S
T ss_pred CEEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccch-HHHHHHHHHHHHHHHH----c-----CCe
Confidence 36888888844 478999999 8999998876 222211 2234555555555543 2 345
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhC-----CCCceEEEeChHHHHHHh
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS 140 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f-----~~~~pV~V~NDa~aa~~g 140 (370)
.|+||-.+.....-...+++.+++.- + .+||.+.||..+-++.
T Consensus 66 vI~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 66 VIAVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS 113 (150)
T ss_dssp EEEE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence 56664222222222346667666543 2 3789999998887663
|
|
| >PLN02920 pantothenate kinase 1 | Back alignment and domain information |
|---|
Probab=92.24 E-value=14 Score=37.19 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh-hCCCceeeCCCCC---
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR-DYPGAVPIRPKVC--- 328 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~-~~p~~~~~~p~~~--- 328 (370)
-.|..++.-.+.-+|+.........+. ..||++|+.....+.. ++.+...+.- ..-..+...|..+
T Consensus 272 Dia~SLL~mVs~nIgqiA~L~A~~~~i--------k~Ivf~G~fir~~~~t--m~~ls~a~~fwS~g~~ka~FLrHeGYl 341 (398)
T PLN02920 272 DVARSLLRMISNNIGQISYLNALRFGL--------KRIFFGGFFIRGHSYT--MDTISVAVHFWSKGEAKAMFLRHEGFL 341 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeecccCcHHH--HHHHHHHHHHhccCceeEEEecCcchh
Confidence 457778888888888777777777774 8999999977665443 5544333321 1133444445544
Q ss_pred -cccccccc
Q 017527 329 -IWPHWHSC 336 (370)
Q Consensus 329 -~~~~~~~~ 336 (370)
+++.+++.
T Consensus 342 GAlGAfl~~ 350 (398)
T PLN02920 342 GALGAFMSY 350 (398)
T ss_pred HHHHHHHhc
Confidence 44444443
|
|
| >TIGR03725 bact_YeaZ universal bacterial protein YeaZ | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.1 Score=37.73 Aligned_cols=96 Identities=18% Similarity=0.140 Sum_probs=69.0
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|++|--+..+.+++.+. ++++.+..... ...--+.|..+|++++++++.+.+++..|+++.
T Consensus 1 iLaidTs~~~~sval~~~----------~~~~~~~~~~~-------~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~~- 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDD----------GEILAERSEEA-------GRNHSEILLPMIEELLAEAGLSLQDLDAIAVGV- 62 (202)
T ss_pred CEEEECCCcceEEEEEEC----------CEEEEEEeehh-------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-
Confidence 478999999999999986 67777654322 233467788889999999999999999988875
Q ss_pred CCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 104 G~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
|+.+-.. .....+-|...++ +|++-.+--.+.+.
T Consensus 63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~ 99 (202)
T TIGR03725 63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA 99 (202)
T ss_pred CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence 6654322 2345666766676 89887776665443
|
This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. |
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.16 Score=51.89 Aligned_cols=70 Identities=13% Similarity=0.054 Sum_probs=44.3
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeE-EEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il-~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||+|+|++|+++++. ++..++++ .....+.+ .....+++.+.+.+.++++++... ..+|.+
T Consensus 1 ~aiD~Gtt~~k~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~ 70 (454)
T TIGR02627 1 VAVDLGASSGRVMLASY------ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDS 70 (454)
T ss_pred CcEeccCCchheEEEEE------cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceE
Confidence 58999999999999998 11114665 23322211 111135677888888888887652 235777
Q ss_pred EEEeecC
Q 017527 98 VCLAVSG 104 (370)
Q Consensus 98 IgIgvpG 104 (370)
|||+.-|
T Consensus 71 Igis~q~ 77 (454)
T TIGR02627 71 IGIDTWG 77 (454)
T ss_pred EEEeccc
Confidence 7776544
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=91.47 E-value=23 Score=38.19 Aligned_cols=73 Identities=18% Similarity=0.016 Sum_probs=44.7
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeecc--CCce
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTE--DGRD 168 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~--dG~l 168 (370)
.+..+-|+||-.-+...+..+++..+.. +. -.+.+.|+..||+++-... ....+++=+|.|.--..++. +|.+
T Consensus 159 ~v~~aVITVPayF~~~qR~at~~Aa~~A-Gl-~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~ 236 (657)
T PTZ00186 159 KVSNAVVTCPAYFNDAQRQATKDAGTIA-GL-NVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVF 236 (657)
T ss_pred ccceEEEEECCCCChHHHHHHHHHHHHc-CC-CeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEE
Confidence 5777889999875544444555544433 32 2467999999998853211 24566777888865444433 5543
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=90.95 E-value=3.7 Score=40.59 Aligned_cols=93 Identities=20% Similarity=0.263 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHc-CCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 74 RETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 74 ~~~l~~~i~~~l~~~-~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
.+.++.+++.++.+. ..++ .-..+.+..|....+.....+.+.|-+.|+. ..|++.++..+++++. |..++++|-
T Consensus 74 ~~~~e~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~~--g~~~~lVVD 149 (371)
T cd00012 74 WDDMEKIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYAS--GRTTGLVVD 149 (371)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHhc--CCCeEEEEE
Confidence 344455555555432 2332 2345778888887766777888888888872 3589999999998853 557899999
Q ss_pred EcccceeeeeccCCceEe
Q 017527 153 AGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~~ 170 (370)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~i~pv~~G~~~~ 167 (371)
T cd00012 150 SGDGVTHVVPVYDGYVLP 167 (371)
T ss_pred CCCCeeEEEEEECCEEch
Confidence 999975555678888753
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.69 E-value=1.5 Score=44.43 Aligned_cols=73 Identities=25% Similarity=0.337 Sum_probs=51.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++.|+|+|.+|+++.+.... + +| +++.....++. .-.-.+.+.+.+.|.++++++-..++. ++..
T Consensus 7 ~iv~LDIGTskV~~lVge~~------~-~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~---~i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELR------P-DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGC---EIKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEc------C-CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCC---Ccce
Confidence 89999999999999888761 1 22 33333222221 111135788999999999999888886 5778
Q ss_pred EEEeecCC
Q 017527 98 VCLAVSGV 105 (370)
Q Consensus 98 IgIgvpG~ 105 (370)
+.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 99999994
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=90.59 E-value=6.2 Score=38.73 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCC
Q 017527 70 EDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKL 146 (370)
Q Consensus 70 ~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~ 146 (370)
.+.+..-|...++++.... ...-..+.+++|.-.+.-.+..+.+.+.+. +- ..|++.....+|++|... ...
T Consensus 71 ~~~~~~~l~~~l~k~~~~~---~~~~p~vvi~vP~~~T~verrA~~~a~~~a-Ga-~~V~li~ep~AaAiGaGl~i~~~~ 145 (326)
T PF06723_consen 71 YEAAEEMLRYFLKKALGRR---SFFRPRVVICVPSGITEVERRALIDAARQA-GA-RKVYLIEEPIAAAIGAGLDIFEPR 145 (326)
T ss_dssp HHHHHHHHHHHHHHHHTSS----SS--EEEEEE-SS--HHHHHHHHHHHHHT-T--SEEEEEEHHHHHHHHTT--TTSSS
T ss_pred HHHHHHHHHHHHHHhccCC---CCCCCeEEEEeCCCCCHHHHHHHHHHHHHc-CC-CEEEEecchHHHHhcCCCCCCCCC
Confidence 4444444444444444311 112335789999988877778888888764 32 689999999999997532 223
Q ss_pred CeEEEEEcccceeeeeccCCceE
Q 017527 147 HGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
..+++-+|.|+-=.+++..|.+.
T Consensus 146 g~miVDIG~GtTdiavislggiv 168 (326)
T PF06723_consen 146 GSMIVDIGGGTTDIAVISLGGIV 168 (326)
T ss_dssp -EEEEEE-SS-EEEEEEETTEEE
T ss_pred ceEEEEECCCeEEEEEEECCCEE
Confidence 44677788887666676666653
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.91 Score=48.80 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=35.9
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHH
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~ 83 (370)
.+.||||+|||.|.+++++. ++.++...+..+. +. .+..+..++.+.+..
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P~--~~~~~~~~~~~~~~~ 51 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-PD--LPSGIVNAGIRLALE 51 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-CC--chhhHHHHHHHHHhh
Confidence 48999999999999999998 4547777777665 43 455555555555444
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=90.37 E-value=18 Score=35.02 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=50.8
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeeccCCceEe
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
....+-+++|...+......+.+.++ .++. -.+++.|...||+++.... ...++++-+|.|+--..++.+|.+..
T Consensus 99 ~~~~vvit~P~~~~~~~r~~~~~~~e-~~g~-~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~ 176 (335)
T PRK13930 99 RKPRIVICVPSGITEVERRAVREAAE-HAGA-REVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY 176 (335)
T ss_pred CCCcEEEEECCCCCHHHHHHHHHHHH-HcCC-CeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe
Confidence 35567899998776655566666655 4552 3578999999988764221 13467888998886666667777654
|
|
| >KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.32 E-value=20 Score=35.47 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=69.8
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEE---------ecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAA---------AGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~---------~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+|||.-.=.-|.++++|. .+++++... .+.-.+. .-...=.++|..++++++++++..+++
T Consensus 34 VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~Hr~ni~~~iqral~aa~~~p~d 103 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLHRENIPRLIQRALDAAGLSPKD 103 (405)
T ss_pred eeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999988 566655421 1111221 123445678999999999999999999
Q ss_pred cceEEEee-cCCCC-hhhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 95 VRAVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 95 v~~IgIgv-pG~~~-~~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
+.+|++.+ ||..- -.-+..+..-|...+. .|..=..-..+
T Consensus 104 ldaIAVT~gPGl~lsL~vGl~fA~glA~~l~--kPlipVHHMeA 145 (405)
T KOG2707|consen 104 LDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ--KPLIPVHHMEA 145 (405)
T ss_pred ceeEEEecCCCceeehhhhHHHHHHHHHhcc--CCccchhHHHH
Confidence 99999876 66532 2345666777777776 56655555554
|
|
| >PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P) | Back alignment and domain information |
|---|
Probab=89.87 E-value=0.39 Score=45.04 Aligned_cols=86 Identities=12% Similarity=0.170 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..|-+++.+++.+.-.......+..|-+-|++.+.++.| .+.+++.+++..|.. -..+.+
T Consensus 152 ~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f--~~~l~~~l~~L~~~~------~~~v~~ 223 (243)
T PF03727_consen 152 RICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNF--RERLQEALDELLPEE------GCKVEF 223 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTH--HHHHHHHHHHHSTT-------CEEEEE
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHH--HHHHHHHHHHhcccc------cceEEE
Confidence 457789999999999999999999531111122356799999999999998 999999999977663 112555
Q ss_pred ccccccccccccccee
Q 017527 333 WHSCDQASANCCGAAL 348 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~ 348 (370)
..++++. ..|||-+
T Consensus 224 ~~~~dgs--g~GAAi~ 237 (243)
T PF03727_consen 224 VLSEDGS--GVGAAIA 237 (243)
T ss_dssp EE-SSTH--HHHHHHH
T ss_pred EEecCch--HHHHHHH
Confidence 5555555 7777644
|
The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A .... |
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=89.41 E-value=9.4 Score=36.79 Aligned_cols=136 Identities=14% Similarity=0.072 Sum_probs=80.6
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC-----CCccccCHHHHHHHHHHHHHHHHHHcC-CCccCcce
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC-----SNHNSVGEDAARETIEKVMADALLKSG-SNRSAVRA 97 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~-----~n~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~v~~ 97 (370)
+-.||+|..++|+.+++..+ ...+++.+.+.+. ......=.++.++.+.++++++.+... ...+ .-
T Consensus 2 ~AvIDiGSNsirl~I~~~~~------~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~--~i 73 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVE------GSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVD--EV 73 (300)
T ss_pred eEEEEecCCeeeEEEEEecC------CcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCC--eE
Confidence 46799999999999998620 0112322222111 001100124556666777776654432 1112 23
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--CCCCCeEEEEEcccceeeeeccCCceE
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--MGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~g~~~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
.+++.+.+=+..+...+.+.++++++ .++.|-+...=|.+ +.. ....+.+++-+|.|+.-..+..++++.
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 46777777555677889999999998 77877776654322 221 223456888899998776665566653
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.48 Score=39.33 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=43.7
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccc--cCHHHHH--HHHHHHHHHHHHHcCCC-ccCcceE
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS--VGEDAAR--ETIEKVMADALLKSGSN-RSAVRAV 98 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~--~~~~~~~--~~l~~~i~~~l~~~~~~-~~~v~~I 98 (370)
+++||+|++++++++... +........+.....+ .....+. +.+...++..++++... ..++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~----------~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED----------GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEEE-SSSEEEEEEET----------TEEEEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-HHHH--S
T ss_pred CEEEEcCCCcEEEEEEEe----------CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhCCeeeEE
Confidence 578999999999999987 3333333333220001 1133444 44444444444433211 1234444
Q ss_pred EEeecCCCChhhHHHHHHHHHhhCCCCceEEEeC
Q 017527 99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 99 gIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N 132 (370)
-++++ .+.-..+.+.+++.++ .|+.+.+
T Consensus 71 ~v~~g----~s~l~~i~~~~~~~~~--~~v~v~~ 98 (120)
T PF14450_consen 71 YVSIG----GSKLQNIEELIEKCGG--MPVRVAG 98 (120)
T ss_dssp --TTG----GGGSTTHHHHHHHHHT--S-EEE--
T ss_pred EecCc----hhHHHhHHHHHHHhCC--CcEEEcc
Confidence 44441 1222468888888887 7888888
|
|
| >PRK13328 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=88.94 E-value=17 Score=34.37 Aligned_cols=119 Identities=24% Similarity=0.207 Sum_probs=64.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|-||+|-|.+|+++++. .++++....... . ....... .+ .+. ..+..|. +
T Consensus 2 M~LliDiGNTriKwa~~~~---------~~~~~~~~~~~~--~---~~~~~~~-------~~-~~~----~~~~~i~--v 53 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADA---------GRPWVHSGAFAH--G---LDAALAP-------DW-SAL----PAPRGAW--I 53 (255)
T ss_pred cEEEEEeCccceeEEEEcC---------CCceeecchhcc--c---chHHHHH-------HH-HhC----CCCCeEE--E
Confidence 3899999999999999986 335544322111 0 0111111 11 111 1244443 4
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEe-Ch------------------HHHHHHhhc--CCCCCeEEEEEcccceeee
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVH-ND------------------ALAALASGT--MGKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~-ND------------------a~aa~~g~~--~g~~~~v~l~~GTGi~g~g 161 (370)
+.++.|+....+.+++++.|+.-.|.++. .+ =.++++++. +..++.+++-+||=+----
T Consensus 54 sSV~~p~~~~~l~~~l~~~~~~~~~~~v~~~~~~~gl~~~Y~~p~~LG~DR~~a~vaA~~~~~~~~~lViD~GTA~TiD~ 133 (255)
T PRK13328 54 SNVAGPAVAARLDALLAARWPGLPVTWVRSRAAQCGVRNGYREPAQLGSDRWAGLIGARAAFPGEHLLIATFGTATTLDA 133 (255)
T ss_pred EecCChhHHHHHHHHHHHHhCCCCeEEEecCccCCCceeCCCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEE
Confidence 56666777788899999888510244443 12 122344432 3335778888888874332
Q ss_pred eccCCceE
Q 017527 162 FTEDGRDA 169 (370)
Q Consensus 162 ii~dG~l~ 169 (370)
+..+|+..
T Consensus 134 v~~~g~~l 141 (255)
T PRK13328 134 LRADGRFA 141 (255)
T ss_pred EcCCCcEe
Confidence 33456543
|
|
| >COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B | Back alignment and domain information |
|---|
Probab=88.90 E-value=4.1 Score=35.04 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=56.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHH-HHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~-~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..+||+|.|.-+|=+++.|. .+ .+++.. .+....... ..+++|.+++++ .++..|-|
T Consensus 2 ~~ilalD~G~KrIGvA~sd~---------~~-~~A~pl---~~i~~~~~~~~~~~~l~~li~~---------~~~~~vVV 59 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDI---------LG-SLASPL---ETIKRKNGKPQDFNALLKLVKE---------YQVDTVVV 59 (141)
T ss_pred ceEEEEecCCceEEEEEecC---------CC-ccccch---hhheeccccHhhHHHHHHHHHH---------hCCCEEEE
Confidence 37999999999999999987 23 233221 111111111 345555555544 35778889
Q ss_pred eecCCCC----hhh--HHHHHHHHHhhCCCCceEEEeChHH
Q 017527 101 AVSGVNH----PTD--QQRILNWLRDIFPGNVRLYVHNDAL 135 (370)
Q Consensus 101 gvpG~~~----~~~--~~~l~~~L~~~f~~~~pV~V~NDa~ 135 (370)
|+|=--+ +.. -..+.+.|+++|+ +||.+...-.
T Consensus 60 GlP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERl 98 (141)
T COG0816 60 GLPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERL 98 (141)
T ss_pred ecCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCcc
Confidence 9987422 211 2468899999998 8988776544
|
subtilis) [DNA replication, recombination, and repair] |
| >TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF | Back alignment and domain information |
|---|
Probab=88.20 E-value=2.9 Score=35.37 Aligned_cols=89 Identities=20% Similarity=0.211 Sum_probs=53.7
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
||+|.|..++=+++.|. .+.+ ++....-... .....++.|.+ ++++ .++..|-||+|=
T Consensus 1 laiD~G~kriGvA~~d~---------~~~~-a~pl~~i~~~---~~~~~~~~l~~----~i~~-----~~~~~iVvGlP~ 58 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI---------TGWT-AQGIPTIKAQ---DGEPDWSRIEE----LLKE-----WTPDKIVVGLPL 58 (130)
T ss_pred CeEccCCCeEEEEEECC---------CCCE-EeceEEEEec---CCcHHHHHHHH----HHHH-----cCCCEEEEeccC
Confidence 68999999999998887 4533 2211100000 11233344444 4444 346788899886
Q ss_pred CCC----hhhH--HHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 105 VNH----PTDQ--QRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 105 ~~~----~~~~--~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
-.+ +... ..+.+.|++.|+ +||...+.-...
T Consensus 59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT 95 (130)
T TIGR00250 59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLST 95 (130)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCH
Confidence 532 2111 378888988887 899888776543
|
This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC. |
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=87.49 E-value=18 Score=35.90 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEE
Q 017527 75 ETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (370)
Q Consensus 75 ~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~ 153 (370)
+.++.+++.++.. ...++ .-..|-+..|-...+.....+.+.|=+.|+. --+++.+++.+++.+. |..++++|-+
T Consensus 74 ~~~e~i~~~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~-~~v~~~~~~~~a~~~~--g~~tglVVD~ 149 (393)
T PF00022_consen 74 DALEEIWDYIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGV-PSVYFIPSPLLALYAS--GRTTGLVVDI 149 (393)
T ss_dssp HHHHHHHHHHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS---SEEEEEEHHHHHHHHT--TBSSEEEEEE
T ss_pred ccccccccccccccccccc-ccceeeeeccccCCchhhhhhhhhhhccccc-ceeeeeeccccccccc--cccccccccc
Confidence 4456666666654 23333 3345777788777777778889999899983 3488999999988753 5678999999
Q ss_pred cccceeeeeccCCceEe
Q 017527 154 GTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 154 GTGi~g~gii~dG~l~~ 170 (370)
|.+..-.--+.||.+..
T Consensus 150 G~~~t~v~pV~dG~~~~ 166 (393)
T PF00022_consen 150 GYSSTSVVPVVDGYVLP 166 (393)
T ss_dssp SSS-EEEEEEETTEE-G
T ss_pred ceeeeeeeeeeeccccc
Confidence 99875455668997743
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.16 E-value=27 Score=32.90 Aligned_cols=131 Identities=15% Similarity=0.151 Sum_probs=65.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
-+-++||+|||-.+++..+. .-+-+.-.+..+. ..+++++-+..++++.-+..- ..+.-|.
T Consensus 18 ~~~vaiDiGGtLaKvv~sp~---------~snrl~F~t~eT~-----kId~~ve~l~~li~~h~k~C~---~~~~lia-- 78 (342)
T COG5146 18 VMKVAIDIGGTLAKVVQSPS---------QSNRLTFKTEETK-----KIDQVVEWLNNLIQQHEKLCL---TKITLIA-- 78 (342)
T ss_pred eEEEEEecCceeeeeeeCcc---------cccceeeehHhhh-----hHHHHHHHHHHHHHHHHhhhh---heeeEEe--
Confidence 47899999999999887543 1233333333332 355666655555554433221 1222222
Q ss_pred ecCC-----CChhhHHHH-------HHHHHh-------hCCCCceEEEeChHHHHHHhh-----cCCCCCeEEEEEcccc
Q 017527 102 VSGV-----NHPTDQQRI-------LNWLRD-------IFPGNVRLYVHNDALAALASG-----TMGKLHGCVLIAGTGT 157 (370)
Q Consensus 102 vpG~-----~~~~~~~~l-------~~~L~~-------~f~~~~pV~V~NDa~aa~~g~-----~~g~~~~v~l~~GTGi 157 (370)
.-|- +.-+.+.++ -+.|.. ..| ..|+|+||+.+-.++- ...-.+-+++.+|+|+
T Consensus 79 tGGga~kfyd~m~~~~~ikv~r~~eme~li~gl~~fv~~IP--~evFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGv 156 (342)
T COG5146 79 TGGGAYKFYDRMSKQLDIKVIRENEMEILINGLNYFVINIP--AEVFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGV 156 (342)
T ss_pred cCCcchhhHHHHhhhccceeeecchHHHHHhcccceeeecc--HHHeeeeccccchhhhhhhhccccccceeeEeccCCe
Confidence 2231 111111111 111211 122 4589999988754431 1222466789999997
Q ss_pred eeeeeccCCc--eEeeCCCC
Q 017527 158 IAYGFTEDGR--DARAAGAG 175 (370)
Q Consensus 158 ~g~gii~dG~--l~~aGg~G 175 (370)
.. .-.+|. ..|.||.+
T Consensus 157 -Si-lkvtgpsqf~RvGGss 174 (342)
T COG5146 157 -SI-LKVTGPSQFERVGGSS 174 (342)
T ss_pred -EE-EEecCcchhccccccc
Confidence 42 334554 34667654
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.85 E-value=19 Score=38.23 Aligned_cols=87 Identities=16% Similarity=0.027 Sum_probs=50.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CC-
Q 017527 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG- 144 (370)
Q Consensus 68 ~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g- 144 (370)
..++++...+..-+.+-.+..- ...+..+.|+||..-+...+...++.-+.. +. -++.+.|+..||+++-. .+
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~l--g~~v~~~VItVPayF~d~qR~at~~A~~ia-Gl-~vlrlinEPtAAAlayg~~~~~ 170 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAYL--GEKVTDAVITVPAYFNDAQRQATKDAARIA-GL-NVLRLINEPTAAALAYGLDKGK 170 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHhh--CCCcceEEEEeCCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhHhccCC
Confidence 3456555544444333332221 256889999999986554544555544433 32 47899999999988522 22
Q ss_pred CCCeEEEEEcccce
Q 017527 145 KLHGCVLIAGTGTI 158 (370)
Q Consensus 145 ~~~~v~l~~GTGi~ 158 (370)
....+|+=+|.|.-
T Consensus 171 ~~~vlV~DlGGGTf 184 (579)
T COG0443 171 EKTVLVYDLGGGTF 184 (579)
T ss_pred CcEEEEEEcCCCCE
Confidence 13444555776653
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=86.56 E-value=18 Score=37.68 Aligned_cols=137 Identities=12% Similarity=0.109 Sum_probs=83.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC--CC-ccccC--HHHHHHHHHHHHHHHHHHcC-CCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--SN-HNSVG--EDAARETIEKVMADALLKSG-SNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~--~n-~~~~~--~~~~~~~l~~~i~~~l~~~~-~~~~~v 95 (370)
..+-.||+|..++++.+++..+ ..-+++.+.+... .. ....+ .++.++...++++++.+... .+.+++
T Consensus 11 ~~~A~IDIGSNSirL~I~e~~~------~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~~~v~~v 84 (513)
T PRK10854 11 QEFAAVDLGSNSFHMVIARVVD------GAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQGFSPANV 84 (513)
T ss_pred CEEEEEEeccchheEEEEEecC------CcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 4789999999999999998611 0113332222111 00 00011 24556777777766654331 111233
Q ss_pred ceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--C-CCCCeEEEEEcccceeeeeccCCce
Q 017527 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 96 ~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~-g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
.+++.+-+=+..+...+.+.+++.++ .+|.|.+...=|.+ |.. . ...+.+++=+|.|+.-.-+..+|++
T Consensus 85 --~~vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~ 159 (513)
T PRK10854 85 --CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEP 159 (513)
T ss_pred --EEEehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCe
Confidence 46777777666677899999999998 89998887764433 221 1 1245788889999866655556653
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.16 E-value=18 Score=37.51 Aligned_cols=137 Identities=12% Similarity=0.087 Sum_probs=83.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec--C---CCcc-ccCHHHHHHHHHHHHHHHHHHcC-CCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG--C---SNHN-SVGEDAARETIEKVMADALLKSG-SNRS 93 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~--~---~n~~-~~~~~~~~~~l~~~i~~~l~~~~-~~~~ 93 (370)
+..+-.||+|..++++.+++..+ ..-+++.+.+.. . .... .. .++.++...++++++.+... .+.+
T Consensus 5 ~~~~A~IDIGSNSirL~I~~~~~------~~~~~l~~~k~~vrLg~g~~~~g~L-s~e~i~r~~~~L~~F~~~~~~~~v~ 77 (496)
T PRK11031 5 SSLYAAIDLGSNSFHMLVVREVA------GSIQTLARIKRKVRLAAGLDSDNAL-SNEAMERGWQCLRLFAERLQDIPPS 77 (496)
T ss_pred CCEEEEEEccccceeEEEEEecC------CceEEeecceeEEEccCCcCcCCCc-CHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34788999999999999998621 011222221111 0 1111 11 24556667777666654332 1112
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hhc--C-CCCCeEEEEEcccceeeeeccCCc
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGR 167 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~~--~-g~~~~v~l~~GTGi~g~gii~dG~ 167 (370)
++ .+++.+-+=+..+...+.+.+++.++ .+|-|.+...=|-+ |.. . ..++.+++=+|.|+--.-+..+++
T Consensus 78 ~i--~~vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~ 153 (496)
T PRK11031 78 QI--RVVATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQ 153 (496)
T ss_pred eE--EEEEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCc
Confidence 33 46677777666677899999999998 89998887764432 221 1 124578888999986665555666
Q ss_pred e
Q 017527 168 D 168 (370)
Q Consensus 168 l 168 (370)
+
T Consensus 154 ~ 154 (496)
T PRK11031 154 A 154 (496)
T ss_pred e
Confidence 5
|
|
| >PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.04 E-value=32 Score=32.66 Aligned_cols=212 Identities=16% Similarity=0.140 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCC--
Q 017527 72 AARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKL-- 146 (370)
Q Consensus 72 ~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~-- 146 (370)
.=.+.|..++++++++++++..++.+|+++. ||..... ...+.+-|...++ +|++=.|--.+-++.......
T Consensus 28 ~H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~~~~~~~~~ 104 (268)
T PF00814_consen 28 QHSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALSARLSEGLK 104 (268)
T ss_dssp HHHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHhHhhhcccc
Confidence 3467788999999999999999999999886 4433221 3466777888887 899988877664443321111
Q ss_pred --CeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhH
Q 017527 147 --HGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL 224 (370)
Q Consensus 147 --~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l 224 (370)
-.+.+..|++- -+ ...++.....|+ . .|.-.+-.+-+. -+..+-..+..+ ..+.+.... +.+
T Consensus 105 ~P~~~~isa~~~~-vy-~~~~~~~~~~~~---t-~d~~~ge~~dk~-----~~~l~l~~~~g~----~le~la~~~-~~~ 168 (268)
T PF00814_consen 105 FPLVLLISAGHTE-VY-LAEGGDYEILGE---T-LDDAIGEAFDKV-----ARLLGLPYPGGP----ALEKLASEG-EAF 168 (268)
T ss_dssp SEEEEEEECSTCE-EE-EEETTEEEEECC---B-SSSCHHHHHHHH-----HHHTT--SSHHH----HHHHHHCT--S--
T ss_pred CceEEEEECCCcc-EE-EEEeeEEEeecc---c-cccccHHHHhhH-----HHHhccccccCc----HHHHHHHhC-Ccc
Confidence 12334455554 22 222322222221 1 121111111111 111110011111 111111011 110
Q ss_pred H-HHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccc
Q 017527 225 I-GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303 (370)
Q Consensus 225 ~-~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~ 303 (370)
- .....+.+. .+..+...+....++ ...|..+-+...++|...+...++..+ +..|+++|||+.. +.+
T Consensus 169 ~~p~~~~~~~~-sFsG~~t~~~~~i~~-~~iA~s~q~~~~~~l~~~~~~a~~~~~--------~~~lv~~GGVaaN-~~l 237 (268)
T PF00814_consen 169 KFPRPLKNCDF-SFSGLKTAVYRLIEK-ADIAASFQEAIADHLAKKAPRALEKPR--------AKSLVVSGGVAAN-KYL 237 (268)
T ss_dssp ----SEETTEE-EEHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT--------CSEEEEESGGGGH-HHH
T ss_pred eeccceeeeeE-EEEcccHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchHHHHHHH-HHH
Confidence 0 000000000 001111122222222 556767766678899999888888877 6899999999863 343
Q ss_pred cchHHHHHHHHh
Q 017527 304 DIGREVVKCILR 315 (370)
Q Consensus 304 ~l~~~v~~~l~~ 315 (370)
.+.+++...+
T Consensus 238 --r~~l~~~~~~ 247 (268)
T PF00814_consen 238 --REGLRKLCSE 247 (268)
T ss_dssp --HHHHHHHHHH
T ss_pred --HHHHHHHHHc
Confidence 6666666555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A .... |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=85.95 E-value=36 Score=33.24 Aligned_cols=51 Identities=12% Similarity=0.128 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
....+++..+++.+.+........ +..++.|+|.||-+.-. .+ .+.+.+.+
T Consensus 248 l~~~~~~l~~EI~rsl~~y~~~~~-----~~~i~~I~L~Ggga~l~-gL--~~~l~~~l 298 (340)
T PF11104_consen 248 LRPFLEELAREIRRSLDFYQSQSG-----GESIERIYLSGGGARLP-GL--AEYLSEEL 298 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------SEEEEESGGGGST-TH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC-----CCCCCEEEEECCccchh-hH--HHHHHHHH
Confidence 345566666666666666555543 23578999999998642 22 44444444
|
|
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=8.8 Score=39.46 Aligned_cols=141 Identities=15% Similarity=0.203 Sum_probs=73.6
Q ss_pred EEEEEEcCccceEEEEEeCC--CCC-C-CCC----CCCCeEEEEEec-CC--CccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 23 VILGLDGGTTSTVCICMPVI--SMS-D-SLP----DPLPVLARAAAG-CS--NHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~--~~~-~-~~~----~~g~il~~~~~~-~~--n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.-+|+|||.|.|.+++..+. +.+ . +-| .+-+++.+...- ++ +....+ .+.|.+.|++-.++++++
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID----~~~i~~~V~~ey~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEID----EAAIKELIEEEYQKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCcccc----HHHHHHHHHHHHHHcCCC
Confidence 56899999999998877652 111 0 100 122344443221 21 111122 355777788888889999
Q ss_pred ccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEE------eCh----HHHHHHhhc-CCCC-CeEEEEEccccee
Q 017527 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYV------HND----ALAALASGT-MGKL-HGCVLIAGTGTIA 159 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V------~ND----a~aa~~g~~-~g~~-~~v~l~~GTGi~g 159 (370)
+++|..=..=+.|-.. ...++++.+++.-.. .-=+| +=+ ..++..+.. .-.+ -.+++=+|.|+--
T Consensus 83 ~~die~~ahIITg~~~--~~~Nl~~~v~~~~~~-~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 83 PESIDSGAVIITGETA--RKENAREVVMALSGS-AGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTAN 159 (475)
T ss_pred HHHccccEEEEEechh--HHHHHHHHHHHhccc-ccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceE
Confidence 8888753333444432 234666666652110 11111 001 111111111 1112 3345668999888
Q ss_pred eeeccCCceEe
Q 017527 160 YGFTEDGRDAR 170 (370)
Q Consensus 160 ~gii~dG~l~~ 170 (370)
..+..+|++..
T Consensus 160 iaVf~~G~l~~ 170 (475)
T PRK10719 160 YALFDAGKVID 170 (475)
T ss_pred EEEEECCEEEE
Confidence 88999998854
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=85.57 E-value=6.5 Score=40.36 Aligned_cols=141 Identities=16% Similarity=0.248 Sum_probs=76.9
Q ss_pred EEEEEEcCccceEEEEEeCC---CCCCCC-C----CCCCeEEEEEec-CC--CccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 23 VILGLDGGTTSTVCICMPVI---SMSDSL-P----DPLPVLARAAAG-CS--NHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~---~~~~~~-~----~~g~il~~~~~~-~~--n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.-+|||||.|.|.+++..+. .++... | .+-+++.+...- ++ +....+ .+.|.+.|++-.+++++.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID----~~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEID----AEALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccC----HHHHHHHHHHHHHHcCCC
Confidence 46899999999998887641 111100 0 122344443221 11 111122 355777788888899999
Q ss_pred ccCcceEEEeecCCCC-hhhHHHHHHHHHhhCCCCceEE--EeChHHHHHHhh---c--C-CCCCeEE--EEEcccceee
Q 017527 92 RSAVRAVCLAVSGVNH-PTDQQRILNWLRDIFPGNVRLY--VHNDALAALASG---T--M-GKLHGCV--LIAGTGTIAY 160 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~-~~~~~~l~~~L~~~f~~~~pV~--V~NDa~aa~~g~---~--~-g~~~~v~--l~~GTGi~g~ 160 (370)
+++|..=+|=+-|-.- .++-..+...|.+..++ =|. -.-|-..-++|- + + ...+..+ +=+|.|.-=.
T Consensus 80 p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aGD--FVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~ 157 (473)
T PF06277_consen 80 PEDIDTGAVIITGETARKENAREVLHALSGFAGD--FVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNI 157 (473)
T ss_pred HHHCccccEEEecchhhhhhHHHHHHHHHHhcCC--EEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeE
Confidence 9999865555666533 23345778888887763 222 223434333321 1 1 1123333 4467666445
Q ss_pred eeccCCceE
Q 017527 161 GFTEDGRDA 169 (370)
Q Consensus 161 gii~dG~l~ 169 (370)
.+..+|++.
T Consensus 158 avf~~G~v~ 166 (473)
T PF06277_consen 158 AVFDNGEVI 166 (473)
T ss_pred EEEECCEEE
Confidence 666777764
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=84.76 E-value=40 Score=32.75 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++|||+|.++++++.+... +..-++......+.+. ....+.-.-.+.+.+.+++++++.+. +...+.++
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~------~~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~---~~k~v~~a 74 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRS------GDRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGI---NTKKAATA 74 (348)
T ss_pred cEEEEEeccCeEEEEEEEec------CCceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCC---CcceEEEE
Confidence 68999999999999999741 0122444444433321 10111111134456666667666654 34567788
Q ss_pred ecCC
Q 017527 102 VSGV 105 (370)
Q Consensus 102 vpG~ 105 (370)
+||.
T Consensus 75 lp~~ 78 (348)
T TIGR01175 75 VPGS 78 (348)
T ss_pred ecCC
Confidence 8884
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.33 E-value=22 Score=32.73 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=72.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|++|-.+..+.+++.+.+ +++++.+........ --++|..++++++.+++....++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~r~-------hse~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLKRN-------HAERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeecC--------CCcEEEEEEEecccc-------HHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 58999998888887777651 688988887655322 246677888889999998888999998886
Q ss_pred cCCCChh---hHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 103 SGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 103 pG~~~~~---~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
|+.+-. -+.-+.+-|.-.++ +|++-.|--.+.+..
T Consensus 67 -GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~ 104 (220)
T COG1214 67 -GPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG 104 (220)
T ss_pred -CCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence 443322 23455666777776 899988877766554
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=82.69 E-value=32 Score=34.32 Aligned_cols=90 Identities=21% Similarity=0.317 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHH-HcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEEE
Q 017527 75 ETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLI 152 (370)
Q Consensus 75 ~~l~~~i~~~l~-~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l~ 152 (370)
+.++.+++.++. +..+.+++ ..|-+.-|-...+..+..+.+.|=+.|+ +| +++.+++.+++.+ .|..++++|-
T Consensus 80 d~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~--vp~~~~~~~~~lslya--~g~~tglVVD 154 (375)
T PTZ00452 80 DDIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFN--TPCLYISNEAVLSLYT--SGKTIGLVVD 154 (375)
T ss_pred HHHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccC--CceEEEechHHHHHHH--CCCceeeeec
Confidence 344455555442 33444433 3455555555666677889999989998 66 7889999999885 3667899999
Q ss_pred EcccceeeeeccCCceE
Q 017527 153 AGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 153 ~GTGi~g~gii~dG~l~ 169 (370)
+|.+..-.--+.||.+.
T Consensus 155 iG~~~t~v~PV~dG~~l 171 (375)
T PTZ00452 155 SGEGVTHCVPVFEGHQI 171 (375)
T ss_pred CCCCcceEEEEECCEEe
Confidence 99997444455788764
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.60 E-value=13 Score=38.64 Aligned_cols=130 Identities=17% Similarity=0.181 Sum_probs=77.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEe------cCCCccccCHHHHHHHHHHHHHHHHHHcC-CCccC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA------GCSNHNSVGEDAARETIEKVMADALLKSG-SNRSA 94 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~------~~~n~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~ 94 (370)
..+..||+|..++|+++++..+ +.-+++.+.+. ...+.... .++.+++..++++.+.+.+. .+..+
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~------~~~~~l~~~k~~vrLgegl~~~g~L-~~eai~R~~~aL~~f~e~~~~~~~~~ 75 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP------GSFQVLFREKRIVRLGEGLDATGNL-SEEAIERALSALKRFAELLDGFGAEE 75 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC------CccchhhhhhhheehhcCccccCCc-CHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 3688999999999999998621 01122221111 11111112 34556666666666654432 22233
Q ss_pred cceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeC---hHHHHHHhh--cCC-CCCeEEEEEcccceeeee
Q 017527 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN---DALAALASG--TMG-KLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 95 v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~N---Da~aa~~g~--~~g-~~~~v~l~~GTGi~g~gi 162 (370)
|. .++++-+=+..+...+...+++.++ .|+-|.. .|....+|. .++ ..+++++=+|.||-=..+
T Consensus 76 v~--~vATsA~R~A~N~~eFl~rv~~~~G--~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~ 145 (492)
T COG0248 76 VR--VVATSALRDAPNGDEFLARVEKELG--LPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVL 145 (492)
T ss_pred EE--EehhHHHHcCCCHHHHHHHHHHHhC--CceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEE
Confidence 33 5566665444566789999999998 7888743 344455553 244 678999999999854433
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.31 E-value=27 Score=34.89 Aligned_cols=91 Identities=22% Similarity=0.294 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcCCCCCeEEEEE
Q 017527 75 ETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVLIA 153 (370)
Q Consensus 75 ~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~g~~~~v~l~~ 153 (370)
+.++.+++.+.++.++++++ ..|-+.-|-...+..++.+.+.|=+.|+ +| +++.+++.+++.+. |..++++|-+
T Consensus 87 d~~e~iw~~~f~~l~v~~~~-~pvllte~~~~~~~~re~~~e~lFE~~~--~p~~~~~~~~~lsl~a~--g~~tglVVD~ 161 (380)
T PTZ00466 87 NDMENIWIHVYNSMKINSEE-HPVLLTEAPLNPQKNKEKIAEVFFETFN--VPALFISIQAILSLYSC--GKTNGTVLDC 161 (380)
T ss_pred HHHHHHHHHHHhhcccCCcc-CeEEEecCccccHHHHHHHHHHHhccCC--CCeEEEecchHHHHHhc--CCceEEEEeC
Confidence 34455555555445554433 2344555544555566788888888887 55 78899999998853 5678999999
Q ss_pred cccceeeeeccCCceEe
Q 017527 154 GTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 154 GTGi~g~gii~dG~l~~ 170 (370)
|.+..-.--+.||....
T Consensus 162 G~~~t~v~PV~~G~~~~ 178 (380)
T PTZ00466 162 GDGVCHCVSIYEGYSIT 178 (380)
T ss_pred CCCceEEEEEECCEEee
Confidence 99874433467887753
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=81.46 E-value=46 Score=36.01 Aligned_cols=87 Identities=16% Similarity=0.053 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CC
Q 017527 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GK 145 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~ 145 (370)
+|+++...+...+.+..+..- ...+..+.|+||-.-+......+++..+.. +. ..+.+.|+..||+++-.. ..
T Consensus 111 speel~a~iL~~lk~~ae~~l--g~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlayg~~~~~~ 186 (668)
T PRK13410 111 APEELSAMILRKLADDASRYL--GEPVTGAVITVPAYFNDSQRQATRDAGRIA-GL-EVERILNEPTAAALAYGLDRSSS 186 (668)
T ss_pred cHHHHHHHHHHHHHHHHHHHh--CCCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEecchHHHHHHhccccCCC
Confidence 455555554444443333221 135778889999986554445566655443 32 246799999999885321 12
Q ss_pred CCeEEEEEccccee
Q 017527 146 LHGCVLIAGTGTIA 159 (370)
Q Consensus 146 ~~~v~l~~GTGi~g 159 (370)
...+++=+|.|.--
T Consensus 187 ~~vlV~DlGgGT~D 200 (668)
T PRK13410 187 QTVLVFDLGGGTFD 200 (668)
T ss_pred CEEEEEECCCCeEE
Confidence 45566778877643
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=81.40 E-value=5.8 Score=40.74 Aligned_cols=57 Identities=12% Similarity=0.130 Sum_probs=42.2
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~ 90 (370)
+|.+|+|+|.|++.++|. ..++.+++.+...+++-. +..+..-+.++++++.+..+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~------~~~~~~~ig~a~apTTv~----~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDL------VDGEPRLIGQAEAPTTVE----PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEec------cCCccEEEEEEeCCCCcC----cccHHHHHHHHHHHHHHhcCC
Confidence 688999999999999993 122688999998887531 246677777777777666553
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.32 E-value=8.5 Score=35.26 Aligned_cols=131 Identities=18% Similarity=0.190 Sum_probs=64.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccc----cCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNS----VGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~----~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++..+|||+|..++...++|. +|..++-.. .....-. .+.-++++-+..+.+.+-++.++. +.
T Consensus 28 sk~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~-~~advVRDGiVvdf~eaveiVrrlkd~lEk~lGi~---~t 94 (277)
T COG4820 28 SKLWVGVDLGTCDIVSMVLDR---------DGQPVAGCL-DWADVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIR---FT 94 (277)
T ss_pred CceEEEeecccceEEEEEEcC---------CCCeEEEEe-hhhhhhccceEEehhhHHHHHHHHHHHHHHhhCeE---ee
Confidence 579999999999999999998 787765321 1110000 011122222222222322233321 21
Q ss_pred eEEEee-cCCCChhhHHHHHHHHHhhCCCCceE-EEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 97 AVCLAV-SGVNHPTDQQRILNWLRDIFPGNVRL-YVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 97 ~IgIgv-pG~~~~~~~~~l~~~L~~~f~~~~pV-~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
...-++ ||.... +.......|+.. + ..| ++...-.+++ ...+-.|+.++-+|.|.-|-.|+.+|++..
T Consensus 95 ha~taiPPGt~~~-~~ri~iNViESA-G--levl~vlDEPTAaa--~vL~l~dg~VVDiGGGTTGIsi~kkGkViy 164 (277)
T COG4820 95 HAATAIPPGTEQG-DPRISINVIESA-G--LEVLHVLDEPTAAA--DVLQLDDGGVVDIGGGTTGISIVKKGKVIY 164 (277)
T ss_pred eccccCCCCccCC-CceEEEEeeccc-C--ceeeeecCCchhHH--HHhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence 111122 343211 101112223332 2 222 2222222221 123557899999999988888999999853
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=80.05 E-value=60 Score=31.42 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=41.0
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---CCCeEEEEEcccceeeeec
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG---KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g---~~~~v~l~~GTGi~g~gii 163 (370)
.+.+++|...+......++..++ .++. ..+.+.|+..||+++.... ....+++-+|.|+--..++
T Consensus 98 ~~vi~vP~~~~~~~r~~~~~a~~-~ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 98 RVVICVPSGITEVERRAVRESAL-GAGA-REVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEE
Confidence 57788995444333444555554 4452 3588999999998863221 2345788899888655555
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 370 | ||||
| 2e2n_A | 299 | Crystal Structure Of Sulfolobus Tokodaii Hexokinase | 6e-13 | ||
| 2ch5_A | 347 | Crystal Structure Of Human N-Acetylglucosamine Kina | 9e-10 | ||
| 2ch6_A | 344 | Crystal Structure Of Human N-Acetylglucosamine Kina | 9e-10 |
| >pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The Apo Form Length = 299 | Back alignment and structure |
|
| >pdb|2CH5|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In Complex With N-Acetylglucosamine Length = 347 | Back alignment and structure |
|
| >pdb|2CH6|A Chain A, Crystal Structure Of Human N-Acetylglucosamine Kinase In Complex With Adp And Glucose Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 370 | |||
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 7e-66 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 1e-63 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 4e-57 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 3e-41 | |
| 1zxo_A | 291 | Conserved hypothetical protein Q8A1P1; NESG, BTR25 | 3e-31 |
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* Length = 347 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 7e-66
Identities = 72/310 (23%), Positives = 130/310 (41%), Gaps = 20/310 (6%)
Query: 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81
+ G++GG T + + + + +LA A +NH +G D E I +++
Sbjct: 6 AIYGGVEGGGTRSEVLL---------VSEDGKILAEADGLSTNHWLIGTDKCVERINEMV 56
Query: 82 ADALLKSGSNRS-AVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALA 139
A K+G + +R++ L++SG + + ++ LRD FP + + DA ++A
Sbjct: 57 NRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 116
Query: 140 SGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAY 199
+ T G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V +
Sbjct: 117 TATPD--GGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSI 174
Query: 200 DGRGPDTMLTS----NILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVA 255
D + ++ ++ Y D R A + A+ GD ++
Sbjct: 175 DNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLS 234
Query: 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315
I + + E L + AV+ + GK P++ VG V ++ W++ +E L
Sbjct: 235 RYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKS---WELLKEGFLLALT 291
Query: 316 DYPGAVPIRP 325
Sbjct: 292 QGREIQAQNF 301
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 204 bits (520), Expect = 1e-63
Identities = 72/305 (23%), Positives = 131/305 (42%), Gaps = 34/305 (11%)
Query: 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMA 82
+I+G+D G T T + + ++G N+++VG A E I++ +
Sbjct: 3 IIVGVDAGGTKTKAVA---------YDCEGNFIGEGSSGPGNYHNVGLTRAIENIKEAVK 53
Query: 83 DALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT 142
A + V + V+G++ D + I P ++ + +D + AL + T
Sbjct: 54 IAA------KGEADVVGMGVAGLDSKFDWENFTPLASLIAP---KVIIQHDGVIALFAET 104
Query: 143 MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGR 202
+G+ G V+IAGTG++ G+ R G G +L D GS Y + +AL V++ DG
Sbjct: 105 LGE-PGVVVIAGTGSVVEGYN-GKEFLRVGGRGWLLSDDGSAYWVGRKALRKVLKMMDGL 162
Query: 203 GPDTMLTSNILSTLELSSPDELIGWTYVDPSW-ARIAALVPVVVSCAEAGDEVANKILQD 261
T+L + +L T+ + DEL+ W+Y +A++ V A GD VA IL+
Sbjct: 163 ENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILKQ 222
Query: 262 SVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 321
E LA + +++ + + + GG+ +N ++ G +
Sbjct: 223 GAELLASQAVYLARKI--------GTNKVYLKGGMFRSNIYHKFFTLYLEK-----EGII 269
Query: 322 PIRPK 326
K
Sbjct: 270 SDLGK 274
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 Length = 305 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 4e-57
Identities = 69/282 (24%), Positives = 112/282 (39%), Gaps = 29/282 (10%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
++G+DGG T T LA A G S S G + + + +
Sbjct: 13 LIGVDGGGTGTRIRL---------HASDGTPLAMAEGGASAL-SQGIAKSWQAVLSTLEA 62
Query: 84 ALLKSGSNRSAVRA--VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG 141
A ++G + A + L +SGV++ + PG RL + D L
Sbjct: 63 AFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQ----APGFARLSLATDGYTTLLGA 118
Query: 142 TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG 201
G+ G ++ GTG+I DG A G G GD SG + +A A DG
Sbjct: 119 HGGQ-PGIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDG 177
Query: 202 RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQD 261
R + LT +L + ++ W + A+ A L P+V+S A D A+ +L+
Sbjct: 178 RHSHSPLTRAVLDFVGG-DWQAMMAWNG-RATPAQFARLAPLVLSAAR-VDPEADALLRQ 234
Query: 262 SVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303
+ E+ +A+ D + P+ + GG+ +A R W
Sbjct: 235 AGEDAWAIARAL---------DPQDELPVALCGGLGQALRDW 267
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 Length = 291 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 3e-41
Identities = 56/280 (20%), Positives = 90/280 (32%), Gaps = 30/280 (10%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
IL D G+T T + L R N + + +
Sbjct: 2 ILIGDSGSTKTDWC----------IAKEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLP 51
Query: 84 ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
A+ G S++RAV +G P + L + P R+ V D L A
Sbjct: 52 AI---GQKASSIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAAR-ALC 106
Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
G G I GTG+ + F A + G ILGD GSG + + ++++
Sbjct: 107 GDSEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFIGSLLKGQMP-- 164
Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
L L L+S D + +A P ++Q+S
Sbjct: 165 --EGLCEAFLQEYGLTSADIIESVYRKPFPNRFLAGFSP--FIAQHLDIPAVYSLVQNSF 220
Query: 264 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303
++ V+ V++ + PL +G V R
Sbjct: 221 DD--FLVRNVLRY-------NRPDLPLHFIGSVAFHYREV 251
|
| >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 Length = 291 | Back alignment and structure |
|---|
Score = 119 bits (298), Expect = 3e-31
Identities = 45/280 (16%), Positives = 87/280 (31%), Gaps = 32/280 (11%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
IL D G+T T + V+ R N E+ ++ + +
Sbjct: 2 ILIADSGSTKTDWCVV----------LNGAVIKRLGTKGINPFFQSEEEIQQKLTASLLP 51
Query: 84 ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143
L AV +G + + D P + ++D LAA
Sbjct: 52 QL-----PEGKFNAVYFYGAGCTPEKAPV-LRRAIADSLPVIGNIKANSDMLAAAHGLCG 105
Query: 144 GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG 203
K G I GTG+ + + + + G ILGD GSG + + +++
Sbjct: 106 QK-AGIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLVGDILKNQLP-- 162
Query: 204 PDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
L L +L+ P+ + +A+L P + +++ +S
Sbjct: 163 --ATLKEEFLKQFDLTPPEIIDRVYRQPFPNRFLASLSP--FIAQHLEEPAIRQLVMNSF 218
Query: 264 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303
+ V + +P+ +G + +
Sbjct: 219 IAF---FRRNVMQY------DYKQYPVHFIGSIAYCYKEI 249
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 370 | |||
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 100.0 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 100.0 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 100.0 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 100.0 | |
| 1zxo_A | 291 | Conserved hypothetical protein Q8A1P1; NESG, BTR25 | 100.0 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 100.0 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 100.0 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 100.0 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 100.0 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 100.0 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 100.0 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 100.0 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 100.0 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 100.0 | |
| 2aa4_A | 289 | Mannac kinase, putative N-acetylmannosamine kinase | 100.0 | |
| 3htv_A | 310 | D-allose kinase, allokinase; NP_418508.1, structur | 100.0 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 100.0 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 100.0 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 100.0 | |
| 3epq_A | 302 | Putative fructokinase; SCRK, ADP binding, PSI2, MC | 99.98 | |
| 3mcp_A | 366 | Glucokinase; structural genomics, joint center for | 99.97 | |
| 2q2r_A | 373 | Glucokinase 1, putative; ATPase hexose kinase fami | 99.97 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 99.97 | |
| 1saz_A | 381 | Probable butyrate kinase 2; askha (acetate and sug | 99.96 | |
| 1woq_A | 267 | Inorganic polyphosphate/ATP-glucomannokinase; tran | 99.95 | |
| 3lm2_A | 226 | Putative kinase; structural genomics, joint center | 99.94 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 99.91 | |
| 1bdg_A | 451 | Hexokinase; phosphotransferase; HET: GLC; 2.60A {S | 99.9 | |
| 1cza_N | 917 | Hexokinase type I; structurally homologous domains | 99.9 | |
| 1cza_N | 917 | Hexokinase type I; structurally homologous domains | 99.84 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 99.69 | |
| 3hm8_A | 445 | Hexokinase-3; glucose, glucose-6-phosphate, non-pr | 99.39 | |
| 3f9m_A | 470 | Glucokinase; hexokinase IV, ATP-binding, diabetes | 99.35 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.77 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 98.6 | |
| 4ijn_A | 398 | Acetate kinase, acetokinase; proprionate kinase, A | 98.44 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 98.39 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 98.38 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 98.31 | |
| 3djc_A | 266 | Type III pantothenate kinase; structural genomics, | 98.29 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 98.29 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 98.28 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 98.27 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 98.25 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 98.23 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 98.2 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 98.18 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 98.17 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 98.14 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 98.07 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 97.97 | |
| 3r9p_A | 391 | ACKA; ssgcid, seattle structural genomics center f | 97.94 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 97.94 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 97.82 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 97.81 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 97.72 | |
| 2h3g_X | 268 | Biosynthetic protein; pantothenate kinase, anthrax | 97.7 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 97.69 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 97.62 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 97.48 | |
| 2e1z_A | 415 | Propionate kinase; TDCD, native, acetate kinase, n | 97.17 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 97.09 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 96.93 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.65 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 96.65 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 96.47 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 96.44 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 96.24 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 95.99 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 95.82 | |
| 2iir_A | 403 | Acetate kinase; transferase; 3.30A {Thermotoga mar | 95.78 | |
| 1g99_A | 408 | Acetate kinase; alpha/beta, askha (acetate and sug | 95.58 | |
| 3khy_A | 384 | Propionate kinase; csgid, IDP01739, ATP-binding, n | 95.44 | |
| 1nu0_A | 138 | Hypothetical protein YQGF; structural genomics, st | 95.43 | |
| 2f9w_A | 271 | Pantothenate kinase; COAA, transferase; HET: PAU; | 95.28 | |
| 4h0o_A | 404 | Acetate kinase; askha (acetate and S kinase, HSC70 | 95.23 | |
| 1vhx_A | 150 | Putative holliday junction resolvase; structural g | 94.78 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 94.57 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 94.41 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 94.05 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 93.84 | |
| 1iv0_A | 98 | Hypothetical protein; rnaseh-like, YQGF, structura | 93.7 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 93.01 | |
| 3r6m_A | 213 | YEAZ, resuscitation promoting factor; actin/HSP70 | 92.89 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 92.73 | |
| 2a6a_A | 218 | Hypothetical protein TM0874; glycoprotein endopept | 92.25 | |
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 91.8 | |
| 3bzc_A | 785 | TEX; helix-turn-helix, helix-hairpin-helix, S1 dom | 91.35 | |
| 2gel_A | 231 | Putative GRAM negative resuscitation promoting FA; | 91.2 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 91.19 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 91.09 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 91.01 | |
| 3sk3_A | 415 | Acetate kinase, acetokinase; actin-like ATPase dom | 90.39 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 87.74 | |
| 3psf_A | 1030 | Transcription elongation factor SPT6; nucleus; 2.5 | 86.55 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 86.17 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 85.48 | |
| 3psi_A | 1219 | Transcription elongation factor SPT6; nucleus; 3.3 | 85.47 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 84.98 | |
| 3t69_A | 330 | Putative 2-dehydro-3-deoxygalactonokinase; structu | 84.04 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 83.92 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 82.76 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 82.17 |
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=328.18 Aligned_cols=261 Identities=25% Similarity=0.345 Sum_probs=220.2
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCc--ceEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV--RAVC 99 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v--~~Ig 99 (370)
.|+||||+|||+++++++|. +|+++.+.+.++.+.. .+++++++.+.+++++++++.+.+++++ .+||
T Consensus 11 ~~~lGiDiGgT~i~~~l~d~---------~G~il~~~~~~~~~~~-~~~~~~~~~l~~~i~~~l~~~~~~~~~i~~~~ig 80 (305)
T 1zc6_A 11 RYLIGVDGGGTGTRIRLHAS---------DGTPLAMAEGGASALS-QGIAKSWQAVLSTLEAAFQQAGLPAAPASACAIG 80 (305)
T ss_dssp CEEEEEEECSSCEEEEEEET---------TCCEEEEEEESCCCGG-GCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEE
T ss_pred CEEEEEEcCccceEEEEEcC---------CCCEEEEEeCCCCCcc-cCHHHHHHHHHHHHHHHHHhcCCChhhhccceEE
Confidence 49999999999999999998 7999998876554443 4789999999999999999888777776 7999
Q ss_pred EeecCCCChhhHHHHHHHHHhhCC-CCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCc
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFP-GNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~-~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~ll 178 (370)
||+||++++..+.. |++.|+ . .||+|+||+|+|++++. +..+++++++|||++|++++.||++.++|||||++
T Consensus 81 ig~pG~v~~~~~~~----l~~~~~~~-~pv~v~NDa~aaa~ge~-~~~~~v~v~~GTGigg~~i~~~G~~~~aGe~Gh~~ 154 (305)
T 1zc6_A 81 LGLSGVHNRQWAGE----FESQAPGF-ARLSLATDGYTTLLGAH-GGQPGIIVALGTGSIGEALYPDGSHREAGGWGYPS 154 (305)
T ss_dssp EEESCCCTTSHHHH----HHHTCCCC-SEEEEECHHHHHHHHHT-TTSSEEEEEESSSEEEEEECTTSCEEEESCCCTTT
T ss_pred EEecCCCchHHHHH----HHHhCCCC-ceEEEECCHHHHHHhhc-CCCCeEEEEecCCeEEEEEeCCCcEEEecCccccc
Confidence 99999988766543 666773 2 89999999999999874 45799999999999777776699999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHH
Q 017527 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKI 258 (370)
Q Consensus 179 gd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~i 258 (370)
+|+|+++||||++|.+.+++.||+.+.|++.++++++++ .+.+.++.+.+.. ...+++.+++.|+++| +||+.|+++
T Consensus 155 ~d~g~~~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-~~~~~~~~~~~v~~~a-~GD~~A~~i 231 (305)
T 1zc6_A 155 GDEASGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVG-GDWQAMMAWNGRA-TPAQFARLAPLVLSAA-RVDPEADAL 231 (305)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHT-SSHHHHHHHHHTC-CHHHHHTTHHHHHHHT-TTCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHC-cCHHHHHHHHhcc-CHHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 999999999999999998889999989999999888886 4667777765532 2234445678999999 999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHH
Q 017527 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVK 311 (370)
Q Consensus 259 l~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~ 311 (370)
+++++++|+.+++++++. | |+.||||||++.....+ |.+.+++
T Consensus 232 ~~~~~~~L~~~l~~l~~~-~--------p~~VvlgGgv~~~~~~~-l~~~l~~ 274 (305)
T 1zc6_A 232 LRQAGEDAWAIARALDPQ-D--------ELPVALCGGLGQALRDW-LPPGFRQ 274 (305)
T ss_dssp HHHHHHHHHHHHHHHCTT-C--------CSCEEEESHHHHHTGGG-SCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-C--------CCeEEEECCchHhHHHH-HHHHHHh
Confidence 999999999999999987 8 79999999998754333 3666655
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=328.55 Aligned_cols=304 Identities=23% Similarity=0.311 Sum_probs=250.9
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCcc-CcceE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS-AVRAV 98 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~-~v~~I 98 (370)
|..|+||||+|||+++++++|. +|+++.+.+.++.+....+++++++.|.+++++++++.+.++. ++.+|
T Consensus 4 M~~~~lgiDiGgt~~~~~l~d~---------~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~gi 74 (347)
T 2ch5_A 4 MAAIYGGVEGGGTRSEVLLVSE---------DGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSL 74 (347)
T ss_dssp SSCEEEEEEECTTCEEEEEEET---------TSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEE
T ss_pred cceEEEEEEcCccceEEEEEeC---------CCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCCcccceeEE
Confidence 4459999999999999999999 8999998887554432136899999999999999998877666 79999
Q ss_pred EEeecCCCChhhHHHHHHHHHhhCCC-CceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCC
Q 017527 99 CLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPI 177 (370)
Q Consensus 99 gIgvpG~~~~~~~~~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~l 177 (370)
|||+||++++..+.+|++.|++.|+. ..||+|+||+++++++. ++ .+++++++|||++++.+..+|+.+++|+|||+
T Consensus 75 gi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~~-~~~v~v~~GTGig~~~v~~~G~~c~cG~~G~l 152 (347)
T 2ch5_A 75 GLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-TP-DGGVVLISGTGSNCRLINPDGSESGCGGWGHM 152 (347)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-CS-SCEEEEEESSSEEEEEECTTSCEEEEECCCTT
T ss_pred EEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-CC-CCcEEEEEcCCceeEEEcCCCCEEecCCcCcc
Confidence 99999999988788999999999951 17999999999999884 54 68999999999977656569999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHHHHcCCCCC----chhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCH
Q 017527 178 LGDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDE 253 (370)
Q Consensus 178 lgd~Gs~~~iG~~~~~~~~~~~dg~~~~----~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~ 253 (370)
.+|++|+++++++++....+..|++.+. +++.+.+.+.+++.+..+++.+.|......+++.+++.|+++|++||+
T Consensus 153 ~~de~s~~~i~~~~~~~~~~~~dg~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~gD~ 232 (347)
T 2ch5_A 153 MGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDP 232 (347)
T ss_dssp TCCTTSHHHHHHHHHHHHHHHHHTSSCCSSCCHHHHHHHHHHHTCSSHHHHHTTTTTTCCHHHHHTTHHHHHHHHHTTCH
T ss_pred cCCCccHHHHHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHhCCCCHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999999998888888887753 467777777777666666666655332233444457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc--------cEEEEcCcccCcccccchHHHHHHHHhhC--CCceee
Q 017527 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF--------PLVMVGGVLEANRRWDIGREVVKCILRDY--PGAVPI 323 (370)
Q Consensus 254 ~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~--------~VVlgGgv~~~~~~~~l~~~v~~~l~~~~--p~~~~~ 323 (370)
.|++++++++++|+.++.++++.+| |+ .||||||++...+.| .+.+++.++++. |...
T Consensus 233 ~a~~il~~~~~~La~~i~~l~~~~~--------p~~~~~~~~~~IvlgGgv~~~~~~~--~~~~~~~l~~~~~~~~~~-- 300 (347)
T 2ch5_A 233 LSRYIFRKAGEMLGRHIVAVLPEID--------PVLFQGKIGLPILCVGSVWKSWELL--KEGFLLALTQGREIQAQN-- 300 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSC--------GGGGCSTTCEEEEEESGGGGGHHHH--HHHHHHHHHHHC---CCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--------ccccccCCCceEEEECCcccCcHHH--HHHHHHHHHhhccccccc--
Confidence 9999999999999999999999999 67 999999999887665 899999999875 3221
Q ss_pred CCCCCcccccccccccccccccceeEe
Q 017527 324 RPKVCIWPHWHSCDQASANCCGAALCR 350 (370)
Q Consensus 324 ~p~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (370)
....+..+..++++++|||.++.
T Consensus 301 ----~~~~i~~~~~~~a~~~GAa~la~ 323 (347)
T 2ch5_A 301 ----FFSSFTLMKLRHSSALGGASLGA 323 (347)
T ss_dssp ----SCSEEEEEEESSCTHHHHHHHHH
T ss_pred ----cCCceEEEecCCChHHHHHHHHH
Confidence 12345666666678899999874
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=318.92 Aligned_cols=276 Identities=21% Similarity=0.221 Sum_probs=221.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|||||+++++|. |+++.+.+.+++|+...++++++++|.+++++++ +.+..++.+||||+
T Consensus 1 ~~lgiDiGGT~~~~~l~d~----------g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~~~i~~igig~ 67 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAKE----------GKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAI---GQKASSIRAVYFYG 67 (291)
T ss_dssp CEEEEEECSSEEEEEEEET----------TEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHH---TTSTTTCCEEEEEE
T ss_pred CEEEEEeCccceEEEEEeC----------CeEEEEEECCCCCcccCCHHHHHHHHHHHHHHHh---CCCcccccEEEEEC
Confidence 4799999999999999984 8999988776655532478999999999888764 22345689999999
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWG 182 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~G 182 (370)
||++ +....++++.|+++|+...||+|+||+|+|++++. +.++++++++|||++|++++.||++.++|||||+++|+|
T Consensus 68 pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~-g~~~~v~v~~GTGigg~~i~~~G~~~~aGe~G~~~~d~g 145 (291)
T 1zbs_A 68 AGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALC-GDSEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEG 145 (291)
T ss_dssp TTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHT-TTSCEEEEEESSSEEEEEECSSSEEEECCCCHHHHCCTT
T ss_pred CCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhc-CCCCcEEEEecCChheEEECCCCcEEEeCCCccccCCCc
Confidence 9998 66667999999999971139999999999999874 678999999999997778888999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCC-hHHHhhhHHHHHHHHhcCCHHHHHHHHH
Q 017527 183 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARIAALVPVVVSCAEAGDEVANKILQD 261 (370)
Q Consensus 183 s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~-~~~~a~~~~~v~~~A~~GD~~A~~il~~ 261 (370)
+++|||++++...+.+ +. .+++.+.+.+.++.. .++++.+.|.... +.+++.+++.|++ ++||+.|++++++
T Consensus 146 ~~~~~G~~~~~~~~~~---~~-~~~l~~~~~~~~~~~-~~~l~~~~~~~~~~~~~ia~~a~~v~~--~~GD~~A~~i~~~ 218 (291)
T 1zbs_A 146 SGAVLGRLFIGSLLKG---QM-PEGLCEAFLQEYGLT-SADIIESVYRKPFPNRFLAGFSPFIAQ--HLDIPAVYSLVQN 218 (291)
T ss_dssp SHHHHHHHHHHHHHTT---CS-CTTHHHHHHHHTTCC-HHHHHHHHHHSSCHHHHHHTTHHHHHT--TTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---cC-CChHHHHHHHHhCcC-HHHHHHHHHcCCCCHHHHHHhhHHHHH--hCCCHHHHHHHHH
Confidence 9999999998765543 23 678888888888743 5566666553322 2455667788888 8999999999999
Q ss_pred HHHHHHHHHHHHHHHh-ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccccc
Q 017527 262 SVEELALSVKAVVQRL-SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQAS 340 (370)
Q Consensus 262 a~~~Lg~~l~~vv~~l-~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~ 340 (370)
++++|+..+ .++.+ | |+.||+|||++.+ | .+.+++.++++.+... . ..++
T Consensus 219 ~~~~La~~i--~~~~~~~--------p~~vvlgGGv~~~---~--~~~l~~~l~~~~~~i~--~------------~~~a 269 (291)
T 1zbs_A 219 SFDDFLVRN--VLRYNRP--------DLPLHFIGSVAFH---Y--REVLSSVIKKRGLTLG--S------------VLQS 269 (291)
T ss_dssp HHHHHHHHH--TGGGCCT--------TSCEEEESHHHHH---T--HHHHHHHHHHTTCCEE--E------------EESC
T ss_pred HHHHHHHHH--hcccCCC--------CceEEEECchHHh---h--HHHHHHHHHHcCCeec--c------------cCcC
Confidence 999999999 45555 6 8999999999875 4 7888899988654322 1 1145
Q ss_pred cccccceeE
Q 017527 341 ANCCGAALC 349 (370)
Q Consensus 341 ~~~~~~~~~ 349 (370)
++.||+.|+
T Consensus 270 ~~~GA~~la 278 (291)
T 1zbs_A 270 PMEGLIQYH 278 (291)
T ss_dssp SHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 688888877
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-40 Score=312.38 Aligned_cols=284 Identities=24% Similarity=0.365 Sum_probs=236.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|+++++++|. +|+++.+.+.++++....+++++++.+.+.+++++++. +.+||||+
T Consensus 3 ~~lgiDiGgt~~~~~l~d~---------~g~i~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~------~~~igi~~ 67 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDC---------EGNFIGEGSSGPGNYHNVGLTRAIENIKEAVKIAAKGE------ADVVGMGV 67 (299)
T ss_dssp CEEEEEECSSCEEEEEECT---------TSCEEEEEEESCCCHHHHCHHHHHHHHHHHHHHHHTSC------CSEEEEEE
T ss_pred EEEEEEeCCCcEEEEEEcC---------CCCEEEEEeCCCCCcccCCHHHHHHHHHHHHHHHHhcC------CCEEEEEc
Confidence 8999999999999999999 89999998887765312368999999999999987532 67999999
Q ss_pred cCCCChh-hHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCC
Q 017527 103 SGVNHPT-DQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDW 181 (370)
Q Consensus 103 pG~~~~~-~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~ 181 (370)
||+ ++. ...+|.+.|++ |+ .||+++||++++++++.. .++++++++|||++..|. ..|...++|||||+++|+
T Consensus 68 ~G~-~~~~~~~~l~~~l~~-~~--~pv~v~ND~~aaa~~e~~-~~~~v~l~~GTG~i~~g~-~~G~~~~aGE~Gh~~~~~ 141 (299)
T 2e2o_A 68 AGL-DSKFDWENFTPLASL-IA--PKVIIQHDGVIALFAETL-GEPGVVVIAGTGSVVEGY-NGKEFLRVGGRGWLLSDD 141 (299)
T ss_dssp TTC-CSHHHHHHHHHHHTT-SS--SEEEEEEHHHHHHHHHHT-TSCEEEEEESSSEEEEEE-CSSCEEEEECSCTTTCCT
T ss_pred CCC-CchhHHHHHHHHHHh-CC--CCEEEeCcHHHHHhhccC-CCCeEEEEecCCEEEEEE-cCCeEEecCCcCCCcCCC
Confidence 999 543 34689999999 98 899999999999998865 478999999999767776 588889999999999999
Q ss_pred CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccC-CChHHHhhhHHHHHHHHhcCCHHHHHHHH
Q 017527 182 GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAALVPVVVSCAEAGDEVANKILQ 260 (370)
Q Consensus 182 Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~-~~~~~~a~~~~~v~~~A~~GD~~A~~il~ 260 (370)
|++|+||+++++...++.|++.+.+.+.+.+.+.++..+...++.+.+.. ....+++.+++.|+++|++||+.|+++++
T Consensus 142 g~~c~cG~~gl~~~~~~le~~~s~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~gd~~a~~il~ 221 (299)
T 2e2o_A 142 GSAYWVGRKALRKVLKMMDGLENKTILYNKVLKTINVKDLDELVMWSYTSSCQIDLVASIAKAVDEAANEGDTVAMDILK 221 (299)
T ss_dssp TSHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHTTCCSHHHHHHHHHHHTTCHHHHHTTHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhCCCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999988889999999999998888888765666666665421 11233345678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccccc
Q 017527 261 DSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQAS 340 (370)
Q Consensus 261 ~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~ 340 (370)
+++++|+..+.++++.+| |+.||||||++.. +.| ++.+++.++++ .+..+...++
T Consensus 222 ~~~~~La~~i~~l~~~l~--------p~~IvlgGgv~~~-~~~--~~~l~~~~~~~--------------~i~~~~~~~~ 276 (299)
T 2e2o_A 222 QGAELLASQAVYLARKIG--------TNKVYLKGGMFRS-NIY--HKFFTLYLEKE--------------GIISDLGKRS 276 (299)
T ss_dssp HHHHHHHHHHHHHHHHHT--------CSEEEEESGGGGS-HHH--HHHHHHHHHHT--------------TCEEECCSCC
T ss_pred HHHHHHHHHHHHHHHhcC--------CCEEEEECCccCc-HHH--HHHHHHHCCCC--------------eEeccCCCCC
Confidence 999999999999999999 7999999999988 665 89999998874 2333442236
Q ss_pred cccccceeEeee
Q 017527 341 ANCCGAALCRIQ 352 (370)
Q Consensus 341 ~~~~~~~~~~~~ 352 (370)
+++|||.+++.+
T Consensus 277 ~~~GAa~la~~~ 288 (299)
T 2e2o_A 277 PEIGAVILAYKE 288 (299)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 689999988544
|
| >1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=324.36 Aligned_cols=274 Identities=19% Similarity=0.221 Sum_probs=206.6
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+||||++++++|. |+++.+.+.++.|+...++++++++|.+++++++. ..++.+||||+
T Consensus 1 ~~lgiDiGGT~i~~~l~d~----------g~il~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-----~~~i~~igig~ 65 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVLN----------GAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQLP-----EGKFNAVYFYG 65 (291)
T ss_dssp ---CEECCTTCEEEEEECS----------SSEEEEEEECCCCTTTSCSTTTTTTTTC------------------CEEEC
T ss_pred CEEEEEeccccEEEEEEcC----------CeEEEEEECCCCCcccCCHHHHHHHHHHHHHHhcC-----cccccEEEEEc
Confidence 4799999999999999984 89999888777655333677888888888887653 24688999999
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWG 182 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~G 182 (370)
||++ +....++++.|++.|+...||+|+||+|+|++++. +.++++++++|||++|+|++.||++.++|||||+++|+|
T Consensus 66 pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aalge~-g~~~~v~v~~GTGi~g~gi~~~G~~~~aGe~Gh~~~d~g 143 (291)
T 1zxo_A 66 AGCT-PEKAPVLRRAIADSLPVIGNIKANSDMLAAAHGLC-GQKAGIACILGTGSNSCFYNGKEIVSNISPLGFILGDEG 143 (291)
T ss_dssp TTCC-TTTTHHHHHHHHHHSCCCSCCEEECSHHHHHHHTT-TTSCBEEEEESSSEEEEEECSSSEEEECCCCCTTTSCCS
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCceEEEECcHHHHHHhhc-CCCCcEEEEeCCChheEEECCCCcEEEeCCCccccCCCc
Confidence 9998 66567999999999971039999999999999885 678999999999997788999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCC-ChHHHhhhHHHHHHHHhcCCHHHHHHHHH
Q 017527 183 SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQD 261 (370)
Q Consensus 183 s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~il~~ 261 (370)
++||||++++...+.. +. .+++.+.+.+.++. +.++++.+.|... .+.+++.+++.|++ ++||+.|++++++
T Consensus 144 ~~~~~G~~~~~~~~~~---~~-~~~l~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ia~~a~~v~~--~~GD~~A~~i~~~ 216 (291)
T 1zxo_A 144 SGAVLGKLLVGDILKN---QL-PATLKEEFLKQFDL-TPPEIIDRVYRQPFPNRFLASLSPFIAQ--HLEEPAIRQLVMN 216 (291)
T ss_dssp SHHHHHHHHHHHGGGT---CS-CSHHHHHHHHHHTC-CHHHHGGGTTTSSCSTTTSSTTTHHHHT--TTTSTTTTHHHHH
T ss_pred hHHHHHHHHHHHHHHc---cC-CChHHHHHHHHhCC-CHHHHHHHHhcCCCCHHHHHHhhHHHHH--hCCCHHHHHHHHH
Confidence 9999999998765433 33 67888888888874 3556666554321 12344556788888 8899999999999
Q ss_pred HHHHHHHHHHHHHHHh-ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccccc
Q 017527 262 SVEELALSVKAVVQRL-SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQAS 340 (370)
Q Consensus 262 a~~~Lg~~l~~vv~~l-~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~ 340 (370)
++++|+..+ .++.+ | |+.||||||++.+ | ++.+++.+++ |..+ +.. .+++
T Consensus 217 ~~~~La~~i--~~~~~~~--------p~~vvlgGGv~~~---l--~~~l~~~l~~--~~~~----------i~~--~~~a 267 (291)
T 1zxo_A 217 SFIAFFRRN--VMQYDYK--------QYPVHFIGSIAYC---Y--KEILQDAARQ--TGIQ----------IGK--ILQS 267 (291)
T ss_dssp HHHHHHTTT--GGGSCTT--------TSCEEECSHHHHH---T--HHHHHHHTTT--TTCC----------EEE--ECSC
T ss_pred HHHHHHHHH--hcccCCC--------CceEEEECcHHHH---H--HHHHHHHHhc--CCcE----------Eee--cCCC
Confidence 999999999 34555 6 8999999999876 5 7888888876 3222 222 2356
Q ss_pred cccccceeE
Q 017527 341 ANCCGAALC 349 (370)
Q Consensus 341 ~~~~~~~~~ 349 (370)
+++||+.|+
T Consensus 268 ~~~GAa~la 276 (291)
T 1zxo_A 268 PMEGLIQYH 276 (291)
T ss_dssp THHHHHTTS
T ss_pred HHHHHHHHH
Confidence 689999887
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=307.58 Aligned_cols=292 Identities=15% Similarity=0.054 Sum_probs=225.1
Q ss_pred CCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 19 ~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
+|+.|+||||+|+|+++++++|. +|+++.+.+.++++. .+++++++.+.+++++++++.+.++.++.+|
T Consensus 3 ~m~~~~lgiDiggt~~~~~l~d~---------~g~il~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~i 71 (326)
T 2qm1_A 3 AMDKKIIGIDLGGTTIKFAILTT---------DGVVQQKWSIETNIL--EDGKHIVPSIIESIRHRIDLYNMKKEDFVGI 71 (326)
T ss_dssp GGGCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCCT--TTTTTHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred CcccEEEEEEECCCEEEEEEECC---------CCCEEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHHHcCCCccceeEE
Confidence 45579999999999999999999 899999888776543 3678899999999999999888777789999
Q ss_pred EEeecCCCChhh------------HH-HHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceee
Q 017527 99 CLAVSGVNHPTD------------QQ-RILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAY 160 (370)
Q Consensus 99 gIgvpG~~~~~~------------~~-~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~ 160 (370)
|||+||++++.. .. +|++.|++.|+ .||+|+||++++++++. + +.++++++++|||+ |+
T Consensus 72 gi~~pG~vd~~~g~v~~~~~l~w~~~~~l~~~l~~~~~--~pv~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtGi-G~ 148 (326)
T 2qm1_A 72 GMGTPGSVDIEKGTVVGAYNLNWTTVQPVKEQIESALG--IPFALDNDANVAALGERWKGAGENNPDVIFITLGTGV-GG 148 (326)
T ss_dssp EEEESSEEETTTTEEECBGGGTBCSCBCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSE-EE
T ss_pred EEecccceeCCCCEEEecCCCCccCCchHHHHHHHHhC--CCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCce-EE
Confidence 999999864321 14 88999999998 89999999999999874 2 45789999999997 67
Q ss_pred eeccCCceEe-----eCCCCCCcCCCC-chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCCh
Q 017527 161 GFTEDGRDAR-----AAGAGPILGDWG-SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSW 234 (370)
Q Consensus 161 gii~dG~l~~-----aGg~G~llgd~G-s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~ 234 (370)
|++.||++++ +|||||+..+.+ ..|+||..+|.+.+. +.+++.+.+.+.+.......++.+.+.+..
T Consensus 149 giv~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~gcle~~~------s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 221 (326)
T 2qm1_A 149 GIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCTCGKRGCLETVS------SATGVVRVARHLSEEFAGDSELKQAIDDGQ- 221 (326)
T ss_dssp EEEETTEECCCSSSCTTCGGGSBSCTTSCBCTTSSBCBTHHHH------SHHHHHHHHHHHTTTCCSCCHHHHHHHHTC-
T ss_pred EEEECCEEeecCCCcccccCcEEECCCCCcCCCCCccchHhhh------CHHHHHHHHHHHhhcccccchhhhcccccc-
Confidence 8999999987 999999988764 456777655543321 223455555544432222233333321110
Q ss_pred HHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 235 ARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 235 ~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
...+++|+++|++||+.|.+++++++++|+..+.++++.+| |+.|||||+++...+.| .+.+++.++
T Consensus 222 ---~~~~~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~--------p~~IvlgGg~~~~~~~~--~~~l~~~l~ 288 (326)
T 2qm1_A 222 ---DVSSKDVFEFAEKGDHFALMVVDRVCFYLGLATGNLGNTLN--------PDSVVIGGGVSAAGEFL--RSRVEKYFQ 288 (326)
T ss_dssp ---CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEEESGGGGTHHH--HHHHHHHHH
T ss_pred ---CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEcChhhhchHHH--HHHHHHHHH
Confidence 12467899999999999999999999999999999999999 79999999999887776 899999998
Q ss_pred hhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 315 RDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 315 ~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
++.+... .....+..+..++ ++++|||.++
T Consensus 289 ~~~~~~~-----~~~~~i~~~~~~~~a~~~GAa~l~ 319 (326)
T 2qm1_A 289 EFTFPQV-----RNSTKIKLAELGNEAGVIGAASLA 319 (326)
T ss_dssp HTSCHHH-----HTTSEEEECSSGGGHHHHHHHHHG
T ss_pred Hhhhhcc-----CCCcEEEEcCcCchHHHHHHHHHH
Confidence 8643211 1233455555444 6789999887
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-38 Score=302.20 Aligned_cols=289 Identities=17% Similarity=0.088 Sum_probs=213.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
+|+||||+|+|+++++++|. +|+++.+.+.+++ .+++++++.|.+.+++++++ .++.+||||
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~---------~G~i~~~~~~~~~----~~~~~~~~~i~~~i~~~~~~-----~~i~gigi~ 63 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDE---------EGRILSTFKVATP----PTAEGIVDAICAAVAGASEG-----HDVEAVGIG 63 (321)
T ss_dssp CEEEEEEECSSEEEEEEECT---------TCCBCCCEEEECC----SSHHHHHHHHHHHHHHHHTT-----CCEEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECC---------CCCEEEEEEeeCC----CCHHHHHHHHHHHHHHHHhh-----cCceEEEEe
Confidence 48999999999999999999 8999988877662 36899999999999998753 368999999
Q ss_pred ecCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-----CCCCCeEEEEEcccceeeeecc
Q 017527 102 VSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 102 vpG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-----~g~~~~v~l~~GTGi~g~gii~ 164 (370)
+||++++.. ..+|++.|+++|+ +||+|+||+|++++++. .+.++++++++|||+ |+|++.
T Consensus 64 ~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGi-G~gii~ 140 (321)
T 3vgl_A 64 AAGYVDDKRATVLFAPNIDWRHEPLKDKVEQRVG--LPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGL-GGGIII 140 (321)
T ss_dssp ESSEECTTSSCEEECSSSCCEEECHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEEE
T ss_pred ccccEeCCCCEEEeCCCCCCcCCCHHHHHhhhhC--CCEEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcce-EEEEEE
Confidence 999976532 2479999999998 89999999999999874 245799999999997 678999
Q ss_pred CCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChh--hHHHHhccCCChHH
Q 017527 165 DGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPD--ELIGWTYVDPSWAR 236 (370)
Q Consensus 165 dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~--~l~~~~~~~~~~~~ 236 (370)
||++++ +||+||+..+. |..|.||..+|. +...+...+.+.+.+........ .++....... .
T Consensus 141 ~G~l~~G~~g~aGEiGh~~v~~~g~~c~cG~~gcl------E~~~S~~al~~~~~~~~~~~~~~~~~~~~~~~~~~--~- 211 (321)
T 3vgl_A 141 GNKLRRGRFGVAAEFGHIRVVPDGLLCGCGSQGCW------EQYASGRALVRYAKQRANATPENAAVLLGLGDGSV--D- 211 (321)
T ss_dssp TTEECCCTTSCCCCGGGSBSSTTCSBCTTSCBSBG------GGTSSHHHHHHHHHHHHHHCGGGCHHHHHTTTSSS--T-
T ss_pred CCEEecCCCCCCccccceEecCCCCCCCCCCcCcH------HHhcCHHHHHHHHHHHhhcCCcchhhhhhcccCcc--c-
Confidence 999875 89999987754 334555544331 22222223333222211100000 0000000000 0
Q ss_pred HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh
Q 017527 237 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 316 (370)
Q Consensus 237 ~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~ 316 (370)
....++|+++|++||+.|++++++++++||..++++++.|| |+.|||||+++...+.| ++.+++.++++
T Consensus 212 -~~~~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~l~--------p~~IvlgGgi~~~~~~l--~~~l~~~l~~~ 280 (321)
T 3vgl_A 212 -GIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFD--------PSAFIVGGGVSDEGELV--LDPIRKSFRRW 280 (321)
T ss_dssp -TCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGTHHH--HHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeChhhcchHHH--HHHHHHHHHHh
Confidence 12457899999999999999999999999999999999999 79999999999988776 89999999987
Q ss_pred CCCceeeCCCCCccccccccccc-ccccccceeEeeeccc
Q 017527 317 YPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQLYP 355 (370)
Q Consensus 317 ~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 355 (370)
.+... .....+|..+..++ ++++|||+++..|+.+
T Consensus 281 ~~~~~----~~~~~~i~~s~l~~~a~l~GAa~l~~~~~~~ 316 (321)
T 3vgl_A 281 LIGGE----WRPHAQVLAAQLGGKAGLVGAADLARQGLEH 316 (321)
T ss_dssp CTTGG----GSCCCEEEECTTGGGHHHHHHHHHHHTC---
T ss_pred ccccc----ccCCCEEEECCCCCcHHHHHHHHHHHhhhhh
Confidence 75322 22345666777655 7889999998766644
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=294.57 Aligned_cols=275 Identities=17% Similarity=0.119 Sum_probs=205.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+++.. .+++++++.+.+.++++++ ...++.+|||
T Consensus 18 ~~~~lgidiggt~i~~~l~d~---------~g~il~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~----~~~~i~gigi 82 (321)
T 3r8e_A 18 QGMILGIDVGGTSVKFGLVTP---------EGEIQNATRFMTADW--VNGIGFVESMKLEIGNFLK----QYPIVKGVGI 82 (321)
T ss_dssp -CCEEEEECCSSEEEEEEECT---------TCCEEEEEEEEHHHH--HTTTCHHHHHHHHHHHHHH----HCTTCCEEEE
T ss_pred CcEEEEEEECCCEEEEEEEcC---------CCcEEEEEEEeCCCC--CCHHHHHHHHHHHHHHHHh----ccCCeeEEEE
Confidence 459999999999999999999 899999887765422 3577889999999999886 2357999999
Q ss_pred eecCCCChh------------h-HHHHHHHHHhhC-CCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeee
Q 017527 101 AVSGVNHPT------------D-QQRILNWLRDIF-PGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 101 gvpG~~~~~------------~-~~~l~~~L~~~f-~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~g 161 (370)
|+||+++++ | ..+|++.|+++| + +||+|+||+||+++++. + +.++++++++|||+ |+|
T Consensus 83 ~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~~--~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~g 159 (321)
T 3r8e_A 83 GWPGLVSLDRTKVILLPNIPSVVNVPIVEILRSEFPH--IHFKIENDAKCAALGEYYFGENKRMQTFILLALGTGV-GSG 159 (321)
T ss_dssp EESSEECTTSCCEEEBTTBCCCCSCCHHHHHHHHCTT--SEEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEE
T ss_pred EecccEECCCCEEEeCCCCccccCCCHHHHHHHHcCC--CCEEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCce-EEE
Confidence 999997632 2 258999999999 7 89999999999999874 2 45899999999997 678
Q ss_pred eccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHH
Q 017527 162 FTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR 236 (370)
Q Consensus 162 ii~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (370)
++.||++++ +|||||+. +.+.+|+ +.+ .+...+.+.+.+.+.......+ .+. ..
T Consensus 160 ii~~G~l~~G~~g~aGEiGh~~-~~~~gcl-------E~~------~S~~al~~~~~~~~~~~~~~~~---~~~----~~ 218 (321)
T 3r8e_A 160 VMMNGKLFIGGRGNGTEVGHML-TTRGKSL-------ENQ------VGINHLIAYTHEQLALDVAKKS---SLH----TI 218 (321)
T ss_dssp EEETTEECCCTTSCCCCGGGCB-CTTSSBS-------HHH------HSHHHHHHHHHHHHHHCTTCCC---SGG----GC
T ss_pred EEECCEEecCCCCCCccccccc-CCCCCcH-------HHh------cCHHHHHHHHHHHhhccCcccc---ccc----cc
Confidence 999999976 99999998 7652211 000 0111222222211100000000 000 00
Q ss_pred HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh
Q 017527 237 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 316 (370)
Q Consensus 237 ~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~ 316 (370)
-....++|+++|++||+.|++++++++++||..+++++++|| |+.|||||+++...+.| ++.+++.++++
T Consensus 219 ~~~~~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~ld--------P~~IvlgG~i~~~~~~l--~~~l~~~l~~~ 288 (321)
T 3r8e_A 219 AELSPKVIADHAAQGDALALAVWADIGTIIGESLVNIVRVMD--------LNNILLGGGISGAFDYF--VPNLKKAMLEH 288 (321)
T ss_dssp SSCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEESGGGGGHHHH--HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEeChhcccchHH--HHHHHHHHHHh
Confidence 012457899999999999999999999999999999999999 79999999999887776 99999999987
Q ss_pred CCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 317 YPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 317 ~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
.+... ....+|..++.++ ++++|||+++
T Consensus 289 ~~~~~-----~~~~~i~~s~l~~~a~~~GAa~l~ 317 (321)
T 3r8e_A 289 LPTYY-----TDDMYIGKATLENDAGLLGAAGLI 317 (321)
T ss_dssp SCHHH-----HTTCEEEECSSGGGHHHHHHHHHH
T ss_pred ccccc-----CCCCEEEEcCCCCcHHHHHHHHHH
Confidence 64321 2234666777665 7789999887
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=291.15 Aligned_cols=278 Identities=15% Similarity=0.041 Sum_probs=206.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|+++++++|. +|+++.+.+.++++. +++++++.|.+.++++..+.+ .+.+|||++
T Consensus 25 ~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~----~~~gigi~~ 88 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNE---------KLERVATERVPTPTD---DYPLLLETIAGLVAKYDQEFA----CEGKIGLGL 88 (327)
T ss_dssp CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCTT---CHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE
T ss_pred EEEEEEECCCEEEEEEEeC---------CCcEEEEEEecCCCC---CHHHHHHHHHHHHHHHHHhcC----CccEEEEEe
Confidence 7999999999999999999 899999988776542 689999999999999887653 378999999
Q ss_pred cCCCChh----------h--HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT----------D--QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~----------~--~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~d 165 (370)
||+++++ | ..+|++.|+++|+ +||+|+||+||+++++. + +.++++++++|||+ |+|++.|
T Consensus 89 pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~--~pV~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtGi-G~gii~~ 165 (327)
T 4db3_A 89 PGMEDADDATVLTVNVPAAKGKPLRADLEAKIG--RSVKIENDANCFALSEAWDEELQDAPSVMGLILGTGF-GGGLIYE 165 (327)
T ss_dssp SEEECTTTCCEEESSSGGGTTSCHHHHHHHHHS--SCCEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSSE-EEEEEET
T ss_pred eccEeCCCCEEEcCCCccccCCCHHHHHHHHHC--CCEEEecchhHHHHHHHHhCCCCCCCcEEEEEeCccc-eEEEEEC
Confidence 9997643 2 2488999999998 89999999999999884 3 34789999999998 6689999
Q ss_pred CceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 166 GRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
|++++ +||+||+..+.....+++. ..+|+.|.|.-. .++|.+. |...+.+++... ......
T Consensus 166 G~l~~G~~g~aGEiGh~~v~~~~~~~~~~--------~~~g~~C~cG~~-gclE~~~--S~~al~~~~~~~---~~~~~~ 231 (327)
T 4db3_A 166 GKVFSGRNNVAGELGHMRLPLDAWFHLGD--------NAPLLGCGCGKK-GCLDSYL--SGRGFELLYAHY---YGEEKK 231 (327)
T ss_dssp TEECCCTTSCTTCGGGSBCCHHHHHHTCT--------TCCCCBCTTSCB-SBGGGTS--SHHHHHHHHHHH---HSCCCC
T ss_pred CEEeecCCCcCcccccEEecccccccccc--------ccCCCcCCCCCc-chhHhhh--CHHHHHHHHHHh---cCCCCC
Confidence 99865 7888887665311100000 002222222211 1233332 333443332100 000124
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.++|+++|++||+.|++++++++++|+..+.++++.|| |+.|||||+++.. +.| ++.+++.++++.+..
T Consensus 232 ~~~i~~~a~~gD~~a~~~~~~~~~~La~~i~~l~~~l~--------p~~IvlgGgi~~~-~~l--~~~l~~~l~~~~~~~ 300 (327)
T 4db3_A 232 AIDIIKANAAGDEKAAEHVERFMELLAICFGNIFTAND--------PHVVALGGGLSNF-ELI--YEEMPKRVPKYLLSV 300 (327)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGC-THH--HHHHHHHGGGGSCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeCcccch-HHH--HHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999999 7999999999986 454 889999998875422
Q ss_pred eeeCCCCCccccccccccc-ccccccceeEe
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALCR 350 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~ 350 (370)
....+|..+..++ ++++|||++++
T Consensus 301 ------~~~~~i~~s~lg~~a~~~GAa~l~l 325 (327)
T 4db3_A 301 ------AKCPKIIKAKHGDSGGVRGAAFLNI 325 (327)
T ss_dssp ------CCCCEEEECSCGGGHHHHHHHHTTC
T ss_pred ------cCCCEEEECCCCCcHHHHHHHHHHh
Confidence 1245677777665 77899998873
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=295.33 Aligned_cols=265 Identities=14% Similarity=0.111 Sum_probs=209.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+++.. .+++++++.+.+.+++++++.+.++.++.+|||
T Consensus 86 ~~~~lGIDiGgt~i~~~l~d~---------~G~vl~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi 154 (380)
T 2hoe_A 86 CAYVLGIEVTRDEIAACLIDA---------SMNILAHEAHPLPSQ--SDREETLNVMYRIIDRAKDMMEKLGSKLSALTV 154 (380)
T ss_dssp GCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEEECCCEEEEEEECC---------CCCEEEEEEEccCCC--CCHHHHHHHHHHHHHHHHHhcCCCcCcEEEEEE
Confidence 358999999999999999999 899999888776543 368999999999999999887666678999999
Q ss_pred eecCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC--CCeEEEEEcccceeeeeccC
Q 017527 101 AVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK--LHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 101 gvpG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~--~~~v~l~~GTGi~g~gii~d 165 (370)
|+||++++.. ..++++.|++.|+ +||+|+||+|++++++. +|. ++++++++|||+ |+|++.|
T Consensus 155 ~~pG~vd~~~g~v~~~~~l~w~~~~l~~~l~~~~~--~pV~v~NDanaaalaE~~~g~~~~~~v~l~~GtGi-G~giv~~ 231 (380)
T 2hoe_A 155 AAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYG--IEVWVENDADMGAVGEKWYTKRDDSFAWILTGKGI-GAGIIID 231 (380)
T ss_dssp EESSCEETTTTEECCCSSCTTBTSCHHHHHHHHHC--SEEEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSC-EEEEEET
T ss_pred EeeccEECCCCEEeccCCCCCcCCChHHHHHHHhC--CCEEEechHHHHHHHHHHhCCCCCcEEEEEeCCce-EEEEEEC
Confidence 9999976421 2478999999998 89999999999999884 454 799999999998 6789999
Q ss_pred CceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhh
Q 017527 166 GRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~ 240 (370)
|++++ +|||||+..+.+..|.||..+| ++.|. +...+.. .
T Consensus 232 G~l~~G~~g~aGEiGh~~v~~~~~c~cG~~gc--------------------lE~~~--s~~~l~~-------------~ 276 (380)
T 2hoe_A 232 GELYRGENGYAGEIGYTRVFNGNEYVFLEDVC--------------------NENVV--LKHVLSM-------------G 276 (380)
T ss_dssp TEECCCSSSCCCCGGGCEEECSSSEEEHHHHH--------------------CHHHH--HHHHHHH-------------C
T ss_pred CEEeccCCCccccccceEecCCCCCCCCCccH--------------------HHHHc--CHHHHHH-------------H
Confidence 99864 8889998765543344444433 22221 2222221 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 017527 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (370)
Q Consensus 241 ~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~ 320 (370)
.++++++|++||+.|.+++++++++|+..++++++.|| |+.|||||+++...+.| .+.+++.++++.+..
T Consensus 277 ~~~v~~~a~~gD~~a~~~l~~~~~~La~~i~~l~~~ld--------P~~IvlgG~~~~~~~~l--~~~l~~~l~~~~~~~ 346 (380)
T 2hoe_A 277 FSSLAEARDSGDVRVKEYFDDIARYFSIGLLNLIHLFG--------ISKIVIGGFFKELGENF--LKKIKIEVETHLLYK 346 (380)
T ss_dssp CC-TTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEEEGGGGGHHHH--HHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCchhhhhHHH--HHHHHHHHHHhcCCC
Confidence 34678889999999999999999999999999999999 79999999998877666 899999999876432
Q ss_pred eeeCCCCCccccccccccc-ccccccceeEee
Q 017527 321 VPIRPKVCIWPHWHSCDQA-SANCCGAALCRI 351 (370)
Q Consensus 321 ~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~ 351 (370)
....+..+..++ ++++|||++++.
T Consensus 347 -------~~~~i~~s~~~~~a~~~GAa~l~~~ 371 (380)
T 2hoe_A 347 -------HSVDMSFSKVQEPVIAFGAAVHALE 371 (380)
T ss_dssp -------CCCEEEECCCCSCHHHHHHHHHHHH
T ss_pred -------CCcEEEEcCCCCcHHHHHHHHHHHH
Confidence 234455555554 678999988743
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=282.98 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=194.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|+++++++|. +|+++.+.+.++++. +++++++.+.+.+ ++ ..++.+|||++
T Consensus 5 ~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~~---~~~~~~~~i~~~~----~~----~~~i~gigi~~ 64 (297)
T 4htl_A 5 KIAAFDIGGTALKMGVVLP---------HGEIILTKSAEISGS---DGDQILAEMKVFL----AE----NTDVTGIAVSA 64 (297)
T ss_dssp CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECSTT---CHHHHHHHHHHHH----HT----CTTCCEEEEEE
T ss_pred EEEEEEeCCCeEEEEEECC---------CCCEEEEEEecCCCC---CHHHHHHHHHHHH----hh----cCCeeEEEEec
Confidence 7999999999999999999 899999888776533 4566666655543 32 24699999999
Q ss_pred cCCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeecc
Q 017527 103 SGVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 103 pG~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~ 164 (370)
||++++. | ..+|+++|+++|+ +||+|+||+||+++++. + +.++++++++|||+ |+|++.
T Consensus 65 pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~--~pV~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGi-G~giv~ 141 (297)
T 4htl_A 65 PGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETG--LPVAIENDANCALLAEKWLGKGQDLDDFLCLTIGTGI-GGGIFS 141 (297)
T ss_dssp SSEECTTTCEEEECTTCGGGTTEEHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEEE
T ss_pred CcceeCCCCEEEeCCCCCCccCCCHHHHHHHHHC--cCEEEecHHHHHHHHHHHhCCCCCCCcEEEEEECcce-EEEEEE
Confidence 9986632 2 1478999999998 89999999999999874 2 45799999999998 668999
Q ss_pred CCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc--CCChHHH
Q 017527 165 DGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV--DPSWARI 237 (370)
Q Consensus 165 dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~--~~~~~~~ 237 (370)
||++++ +||+||+..+..+...+++. +++.+. +...+.+++.. .....
T Consensus 142 ~G~l~~G~~g~aGEiGh~~~~~~~~~~~~~~---------------------~le~~~--s~~~l~~~~~~~~~~~~~-- 196 (297)
T 4htl_A 142 NGELVRGGRFRAGEFGYMFSERPGAFRPGKY---------------------TLNETT--TMLVLRRQYAELTGRPLE-- 196 (297)
T ss_dssp TTEECCCTTSCCCCGGGSBSSCCCSSCGGGG---------------------BHHHHS--SHHHHHHHHHHHHCCCGG--
T ss_pred CCEEEecCCCCcccccceEecCCCCcCcccC---------------------cHHHhc--cHHHHHHHHHHHhcCCcc--
Confidence 999975 89999997764322111110 112222 22233322110 00000
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC
Q 017527 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY 317 (370)
Q Consensus 238 a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~ 317 (370)
....++|+++|++||+.|++++++++++||..+.++++.+| |+.|||||+++.. +.| ++.+++.++++.
T Consensus 197 ~~~~~~i~~~a~~gd~~a~~~~~~~~~~La~~i~~l~~~~~--------p~~IvlgGgi~~~-~~~--~~~l~~~l~~~~ 265 (297)
T 4htl_A 197 EITGEEIFANYDAHDAVSERLITEFYTGICTGLYNLIYLFD--------PTHIFIGGGITSR-PTF--IAELKHHMESFG 265 (297)
T ss_dssp GCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGS-TTH--HHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeCccccc-HHH--HHHHHHHHHHhc
Confidence 12357899999999999999999999999999999999999 7999999999985 555 899999997643
Q ss_pred CCceeeCCCCCccccccccccc-ccccccceeEee
Q 017527 318 PGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRI 351 (370)
Q Consensus 318 p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~ 351 (370)
+ ....|..+..++ ++++|||.+++.
T Consensus 266 ~---------~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 266 L---------RDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp C---------TTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred c---------CCCeEEECCcCChHHHHhHHHHHHH
Confidence 2 234566666665 778999998843
|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=290.85 Aligned_cols=284 Identities=15% Similarity=0.086 Sum_probs=211.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+++ .+++++++.+.+.+++++++.+....++.+|||
T Consensus 29 ~~~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi 95 (343)
T 2yhw_A 29 TLSALAVDLGGTNLRVAIVSM---------KGEIVKKYTQFNP----KTYEERINLILQMCVEAAAEAVKLNCRILGVGI 95 (343)
T ss_dssp EEEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECC----SSHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CcEEEEEEECCCEEEEEEECC---------CCcEEEEEEEcCC----CCHHHHHHHHHHHHHHHHHhcccccCceEEEEE
Confidence 359999999999999999999 8999998876653 257888999999999998776544567999999
Q ss_pred eecCCCChh-------------hH-HHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeee
Q 017527 101 AVSGVNHPT-------------DQ-QRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 101 gvpG~~~~~-------------~~-~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~g 161 (370)
|+||+++++ |. .+|++.|+++|+ .||+|+||+|++++++. + +.++++++++|||+ |+|
T Consensus 96 ~~pG~vd~~~g~v~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtGi-G~g 172 (343)
T 2yhw_A 96 STGGRVNPREGIVLHSTKLIQEWNSVDLRTPLSDTLH--LPVWVDNDGNCAALAERKFGQGKGLENFVTLITGTGI-GGG 172 (343)
T ss_dssp EESSEEETTTTEEEECCTTSSSCSSEECHHHHHHHHC--SCEEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSSE-EEE
T ss_pred ecccCEeCCCCEEEeCCcCCCCCcCCCHHHHHHHHHC--CCEEEechhHHHHHHHHHhCCCCCCCcEEEEEECCCE-EEE
Confidence 999985532 11 368899999998 89999999999999874 3 34789999999997 678
Q ss_pred eccCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChH
Q 017527 162 FTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWA 235 (370)
Q Consensus 162 ii~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (370)
++.||++++ +|||||+..++ |..|+||..+|.+.+. +.+++.+.+.+.+.. +...+ +......
T Consensus 173 ii~~G~l~~G~~g~aGEiGh~~~~~~g~~c~cG~~gclE~~~------s~~al~~~~~~~~~~-~~~~~----~~~~~~~ 241 (343)
T 2yhw_A 173 IIHQHELIHGSSFCAAELGHLVVSLXGPDCSCGSHGCIEAYA------SGMALQREAKKLHDE-DLLLV----EGMSVPK 241 (343)
T ss_dssp EEETTEECCCTTSCTTCGGGCBCCC--CBCTTSCBSBHHHHH------SHHHHHHHHHHHHHT-TCSCC----TTCCC--
T ss_pred EEECCEEecCCCCcccccCCEEEccCCCcCCCCCCCcHHHhc------CHHHHHHHHHHhhcc-ccccc----ccccccc
Confidence 999999865 89999998876 5678887765543321 122343333332210 00000 0000000
Q ss_pred HHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 236 RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 236 ~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
.-...+++|+++|++||+.|++++++++++|+..+.+++++|| |+.|||||++. +.| .+.+++.+++
T Consensus 242 ~~~~~~~~v~~~a~~gd~~a~~il~~~~~~La~~i~~l~~~l~--------P~~IvlgG~i~---~~~--~~~l~~~l~~ 308 (343)
T 2yhw_A 242 DEAVGALHLIQAAKLGNAKAQSILRTAGTALGLGVVNILHTMN--------PSLVILSGVLA---SHY--IHIVKDVIRQ 308 (343)
T ss_dssp --CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTC--------CSEEEEESTTH---HHH--HHHHHHHHHH
T ss_pred cccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeCCcH---HHH--HHHHHHHHHH
Confidence 0012468899999999999999999999999999999999999 79999999996 344 8899999988
Q ss_pred hCCCceeeCCCCCcccccccccccccccccceeEe
Q 017527 316 DYPGAVPIRPKVCIWPHWHSCDQASANCCGAALCR 350 (370)
Q Consensus 316 ~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (370)
+.+.. ....++..+..++.+++|||++++
T Consensus 309 ~~~~~------~~~~~i~~s~~~~~~~~GAa~l~~ 337 (343)
T 2yhw_A 309 QALSS------VQDVDVVVSDLVDPALLGAASMVL 337 (343)
T ss_dssp HSCGG------GTTCEEEECCCSCHHHHHHHHHHH
T ss_pred hcccc------cCCcEEEEccCCCchHHHHHHHHH
Confidence 65421 223455555555667899998873
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=282.18 Aligned_cols=270 Identities=18% Similarity=0.170 Sum_probs=203.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|+++++++|. + .++.+.+.+++.. ..+++++.|.+.+++++++. ..++.+||||+
T Consensus 2 ~~lgiDiGgt~i~~~l~d~---------~-~~l~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~---~~~i~gigi~~ 65 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDG---------K-RLLSKVVVPTPKE---GGERVAEALAEAAERAEREA---GVRGEAIGLGT 65 (302)
T ss_dssp CEEEEEECSSEEEEEEECS---------S-SBSCCEEEECCSS---CHHHHHHHHHHHHHHHHHHH---TCCCSSEEEEE
T ss_pred EEEEEEEcCCEEEEEEEeC---------C-CcEEEEEEcCCCC---ChHHHHHHHHHHHHHHHhhc---cCCceEEEEEe
Confidence 7999999999999999998 6 4556666665443 34889999999999998765 35799999999
Q ss_pred cCCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeecc
Q 017527 103 SGVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 103 pG~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii~ 164 (370)
||++++. | ..++++.|+++|+ +||+|+||+|++++++. + +.++++++++|||+ |+|++.
T Consensus 66 pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtGi-G~gii~ 142 (302)
T 3vov_A 66 PGPLDFRRGVIRFAPNIPGVQDFPIRRILEEATG--RPVFLENDANAAALAEHHLGAAQGEESSLYLTVSTGI-GGGVVL 142 (302)
T ss_dssp SSCEETTTTEEC---CCTTCTTCCHHHHHHHHHS--SCEEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSSE-EEEEEE
T ss_pred cccEeCCCCEEEcCCCCCCcCCCChHHHHHHhhC--CCEEEEechHHHHHHHHHhCCCCCCCCEEEEEECCce-eEEEEE
Confidence 9996542 2 2478999999998 89999999999999874 2 45799999999998 668999
Q ss_pred CCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHh
Q 017527 165 DGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA 238 (370)
Q Consensus 165 dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a 238 (370)
||++++ +||+||+..+. |..|.||+.+| +|.+. |...+.++.... ....
T Consensus 143 ~g~l~~G~~g~aGEiGh~~v~~~g~~c~cg~~gc--------------------lE~~~--s~~~l~~~~~~~---~~~~ 197 (302)
T 3vov_A 143 GGRVLRGERGQGGELGHLTLLPGGPACGCGLEGC--------------------LEALA--AGRALERDATYA---FQRP 197 (302)
T ss_dssp TTEECCCTTSCTTCGGGSBSSTTCCBCTTSCBSB--------------------HHHHH--SHHHHHHHHHHH---HTSC
T ss_pred CCEEeeCCCCCCccccceEecCCCCCCCCCCcch--------------------HHHHh--CHHHHHHHHHHh---hCCC
Confidence 999864 78888886543 33333333222 22221 223333321100 0001
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcc-cCcccccchHHHHHHHHhhC
Q 017527 239 ALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL-EANRRWDIGREVVKCILRDY 317 (370)
Q Consensus 239 ~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~-~~~~~~~l~~~v~~~l~~~~ 317 (370)
...++|++++++||+.|++++++++++|+..+.++++.|| |+.|||||+++ ...+.| ++.+++.++++.
T Consensus 198 ~~~~~i~~~a~~gd~~a~~~~~~~~~~l~~~i~~l~~~~~--------p~~ivlgG~i~~~~~~~l--~~~l~~~l~~~~ 267 (302)
T 3vov_A 198 VDTRELFRLFQAGDPKAERLVLQAARYVGIGLASLVKAFD--------PGVVVLGGGVALNAPEGY--WEALLEAYRRYL 267 (302)
T ss_dssp CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESHHHHTSCHHH--HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEeChhHhhhhHHH--HHHHHHHHHHhc
Confidence 2457899999999999999999999999999999999999 79999999999 877766 999999999876
Q ss_pred CCceeeCCCCCccccccccccc-ccccccceeEeeec
Q 017527 318 PGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQL 353 (370)
Q Consensus 318 p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (370)
+... .|. |..+..++ ++++|||++++.++
T Consensus 268 ~~~~--~~~-----i~~s~lg~~a~~~GAa~l~~~~~ 297 (302)
T 3vov_A 268 QGWE--APP-----LRRARLGAEAGLLGAALTAYLEV 297 (302)
T ss_dssp TTSC--CCC-----EEECSSGGGHHHHHHHHHHHHHH
T ss_pred chhc--CCc-----EEEcCCCCcHHHHHHHHHHHHHh
Confidence 4321 121 55666655 77899999885444
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=290.65 Aligned_cols=286 Identities=14% Similarity=0.112 Sum_probs=213.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+++. .+++++++.+.+.+++++++.+.++.++.+|||
T Consensus 107 ~~~~lGIDiGgt~i~~~l~d~---------~G~il~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi 174 (429)
T 1z05_A 107 GWQFLSMRLGRGYLTIALHEL---------GGEVLIDTKIDIHE---IDQDDVLARLLFEIEEFFQTYAAQLDRVTSIAI 174 (429)
T ss_dssp TEEEEEEEEETTEEEEEEEET---------TSCEEEEEEEECCC---CBHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred CCEEEEEEECCCEEEEEEECC---------CCCEEEEEEEcCCC---CCHHHHHHHHHHHHHHHHHhcCCCcCceEEEEE
Confidence 468999999999999999999 89999988776643 258999999999999999988877778999999
Q ss_pred eecCCCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeeec
Q 017527 101 AVSGVNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 101 gvpG~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gii 163 (370)
|+||++++. | ..+|++.|+++|+ +||+|+||+|++++++. + +.++++++++|||+ |+|++
T Consensus 175 ~~pG~vd~~~g~v~~~~~l~w~~~~l~~~L~~~~~--~pV~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~giv 251 (429)
T 1z05_A 175 TLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATG--LPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGL-GAGIV 251 (429)
T ss_dssp EESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEEE
T ss_pred eccCcEeCCCCeEeecCCCCCCCCCHHHHHHHHhC--CCEEEechhHHHHHHHHHhCCCCCCCcEEEEEECCcE-EEEEE
Confidence 999996543 1 2489999999998 89999999999999874 3 45799999999998 67899
Q ss_pred cCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH
Q 017527 164 EDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI 237 (370)
Q Consensus 164 ~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~ 237 (370)
.||++++ +|||||+..++ |..|.||+.+|.+.+. +...+.+.+.+.+.......+ + .. .
T Consensus 252 ~~G~l~~G~~g~AGEiGH~~v~~~g~~c~cG~~gclE~~~------S~~al~~~~~~~~~~~~~~~l----~-~~---~- 316 (429)
T 1z05_A 252 LDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGCLETVA------SSQAIRDQVTARIQAGEPSCL----A-TV---E- 316 (429)
T ss_dssp ETTEECCTTTTCTTBCTTSBCCTTCCBCTTSCBSBTHHHH------SHHHHHHHHHHHHHTTCCCTT----T-TC---S-
T ss_pred ECCEEeeCCCCcccccCceEEcCCCCCCCCCCCcchHHHh------CHHHHHHHHHHHhhccccccc----c-cc---c-
Confidence 9999865 89999998865 4456666544332211 111222222111100000000 0 00 0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC
Q 017527 238 AALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY 317 (370)
Q Consensus 238 a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~ 317 (370)
....++|+++|++||+.|++++++++++||.++++++++|| |+.|||||+++...+.| ++.+++.++++.
T Consensus 317 ~~~~~~i~~~a~~gD~~a~~il~~~~~~L~~~i~~l~~~ld--------P~~IvlgG~i~~~~~~l--~~~l~~~l~~~~ 386 (429)
T 1z05_A 317 EISIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFN--------PEKILIGGVINQAKSIL--YPSIEQCIREQS 386 (429)
T ss_dssp SCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGHHHH--HHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEeCccccchHHH--HHHHHHHHHHhc
Confidence 12457899999999999999999999999999999999999 79999999999877776 899999998863
Q ss_pred CCceeeCCCCCcccccccccccccccccceeEee
Q 017527 318 PGAVPIRPKVCIWPHWHSCDQASANCCGAALCRI 351 (370)
Q Consensus 318 p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (370)
.... .....|..+..++.+++|||++++.
T Consensus 387 ~~~~-----~~~~~I~~s~l~~~~~~GAa~l~~~ 415 (429)
T 1z05_A 387 LPVY-----HQDLKLVESRFYKQATMPGAALIKQ 415 (429)
T ss_dssp CHHH-----HTTCEEEECSCSSCTTHHHHHHHHH
T ss_pred cccc-----CCCcEEEEecCCCccHHHHHHHHHH
Confidence 2111 1123344444332258999988743
|
| >2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=278.91 Aligned_cols=261 Identities=16% Similarity=0.090 Sum_probs=198.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|+|+++++++|. +|+++.+.+.++++. .+++++++.|.+.+++++. ++.+||||+
T Consensus 2 ~~lgidiggt~~~~~l~d~---------~g~il~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~ 63 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGA---------DGQIRDRRELPTPAS--QTPEALRDALSALVSPLQA-------HAQRVAIAS 63 (289)
T ss_dssp CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHTTTGG-------GCSEEEEEE
T ss_pred eEEEEEeCCCEEEEEEECC---------CCCEEEEEEecCCCC--CCHHHHHHHHHHHHHHHHh-------hCCEEEEEe
Confidence 6899999999999999998 899999988777543 2688899998888887654 245899999
Q ss_pred cCCCChh------------hH-HHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCCC---CeEEEEEcccceeeeeccC
Q 017527 103 SGVNHPT------------DQ-QRILNWLRDIFPGNVRLYVHNDALAALASGT-MGKL---HGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 103 pG~~~~~------------~~-~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~~---~~v~l~~GTGi~g~gii~d 165 (370)
||++++. |. .+|++.|+++|+ .||+|+||+|++++++. +|.. +++++++|||+ |+|++.|
T Consensus 64 pG~vd~~~g~v~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~e~~~g~~~~~~~v~l~~GtGi-G~gii~~ 140 (289)
T 2aa4_A 64 TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTN--LPTIAINDAQAAAWAEFQALDGDITDMVFITVSTGV-GGGVVSG 140 (289)
T ss_dssp SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHTSCTTCCCEEEEEESSSE-EEEEEET
T ss_pred ccceeCCCCEEEeCCCCCcccCCChHHHHHHHHC--CCEEEechHHHHHHHHHHhCCCCCceEEEEEeCccE-EEEEEEC
Confidence 9986532 21 478999999998 89999999999999874 4321 89999999997 7789999
Q ss_pred CceEe-----eCCCCCCcCCCCc-hHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhh
Q 017527 166 GRDAR-----AAGAGPILGDWGS-GYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA 239 (370)
Q Consensus 166 G~l~~-----aGg~G~llgd~Gs-~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~ 239 (370)
|++++ +|||||+..|+++ .|+||+.+|. +.+. |...+.++... . . ...
T Consensus 141 G~l~~G~~g~aGE~Gh~~~~~~g~~c~cG~~gcl--------------------e~~~--s~~~l~~~~~~-~--~-~~~ 194 (289)
T 2aa4_A 141 CKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGCV--------------------EAIA--SGRGIAAAAQG-E--L-AGA 194 (289)
T ss_dssp TEEECCTTSCCCCGGGSBSCTTSCBCTTSCBSBH--------------------HHHH--SHHHHHHTCCG-G--G-TTC
T ss_pred CEEeeCCCCCCccCCcEEECCCCCcCCCCCchhH--------------------HHHh--CHHHHHHHHHH-h--c-cCC
Confidence 99975 9999999987654 3455543322 1121 22233322110 0 0 013
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG 319 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~ 319 (370)
..+++++++++||+.|++++++++++|+..+.+++++|| |+.|||||+++ ..+.| ++.+++.++++.+
T Consensus 195 ~~~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~--------p~~ivlgG~~~-~~~~~--~~~l~~~l~~~~~- 262 (289)
T 2aa4_A 195 DAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTD--------CQCVVVGGSVG-LAEGY--LALVETYLAQEPA- 262 (289)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEEHHHH-TSTTH--HHHHHHHHTTSCG-
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEeCccc-ccHHH--HHHHHHHHHHhcC-
Confidence 467899999999999999999999999999999999999 79999999999 55565 8999999987421
Q ss_pred ceeeCCCCCccccccccccc-ccccccceeE
Q 017527 320 AVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
. ....+..+..++ ++++|||+++
T Consensus 263 ~-------~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 263 A-------FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp G-------GCCEEEECSCSSCHHHHHHHHHH
T ss_pred c-------cCCEEEECCCCCchHHHHHHHHH
Confidence 1 123444555544 6789998875
|
| >3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=276.36 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=187.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.++++. .++.+++.+.+.+++++++.+ .++.+|||
T Consensus 6 ~~~~lgiDiGgt~i~~~l~d~---------~G~il~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~---~~i~gigi 70 (310)
T 3htv_A 6 HNVVAGVDMGATHIRFCLRTA---------EGETLHCEKKRTAEV---IAPGLVSGIGEMIDEQLRRFN---ARCHGLVM 70 (310)
T ss_dssp EEEEEEEEECSSEEEEEEEET---------TSCEEEEEEEEHHHH---HTTCHHHHHHHHHHHHHHHHT---EEEEEEEE
T ss_pred CCEEEEEEeCCCEEEEEEECC---------CCCEEEEEEecCccc---cHHHHHHHHHHHHHHHHHhcC---CCeeEEEE
Confidence 359999999999999999999 899998877654321 245678888888888876654 25899999
Q ss_pred eecCCCChh-----------h-H---HHHHHHHHhhCCCCceEEEeChHHHHHHhhc----CCCCCeEEEEEcccceeee
Q 017527 101 AVSGVNHPT-----------D-Q---QRILNWLRDIFPGNVRLYVHNDALAALASGT----MGKLHGCVLIAGTGTIAYG 161 (370)
Q Consensus 101 gvpG~~~~~-----------~-~---~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~----~g~~~~v~l~~GTGi~g~g 161 (370)
|+||+++++ | . .+|++.|+++|+ +||+|+||+|++++++. .+..+++++++|||+ |+|
T Consensus 71 ~~pG~vd~~~g~v~~~~~l~~~~~~~~~l~~~l~~~~~--~pv~v~NDanaaa~~e~~~~~~~~~~~~~v~~GtGi-G~g 147 (310)
T 3htv_A 71 GFPALVSKDKRTIISTPNLPLTAADLYDLADKLENTLN--CPVEFSRDVNLQLSWDVVENRLTQQLVLAAYLGTGM-GFA 147 (310)
T ss_dssp EESSCBCTTSSCBCSCCSSSCCHHHHTTHHHHHHHHHT--SCEEEEEHHHHHHHHHHHHTTCTTSCEEEEEESSSE-EEE
T ss_pred eccccEeCCCCEEEeCCCCCCccccCccHHHHHHHHhC--CCEEEeeHHHHHHHHHHhhcccCCceEEEEEeceeE-EEE
Confidence 999997642 1 1 478999999998 89999999999887652 345789999999998 668
Q ss_pred eccCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChH
Q 017527 162 FTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWA 235 (370)
Q Consensus 162 ii~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~ 235 (370)
++.||++++ +||+||+..+. |..|.||+.+| +|.|. |...+.++......
T Consensus 148 ii~~G~l~~G~~g~aGEiGh~~v~~~g~~C~cG~~Gc--------------------lE~~~--S~~al~~~~~~~~~-- 203 (310)
T 3htv_A 148 VWMNGAPWTGAHGVAGELGHIPLGDMTQHCACGNPGC--------------------LETNC--SGMALRRWYEQQPR-- 203 (310)
T ss_dssp EEETTEEECCSSSCCCC-----------------------------------------CCSS--SHHHHHHHHTTSCC--
T ss_pred EEECCEEeecCCCCceeCcceEeCCCCCcCCCCCCce--------------------ehhhh--CHHHHHHHHHhccC--
Confidence 999999975 78888876543 34555665544 22222 33333332211000
Q ss_pred HHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 236 RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 236 ~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
....+++++++ +||+.+.++++++ +..+++++++|| |+.|||||+++...+.+ .+.+++.+++
T Consensus 204 --~~~~~~~~~~~-~~d~~~~~~~~~~----a~~la~l~~~~d--------P~~IvlgG~v~~~~~~~--~~~l~~~l~~ 266 (310)
T 3htv_A 204 --NYPLRDLFVHA-ENAPFVQSLLENA----ARAIATSINLFD--------PDAVILGGGVMDMPAFP--RETLVAMTQK 266 (310)
T ss_dssp --SSCGGGHHHHH-TTCHHHHHHHHHH----HHHHHHHHHHHC--------CSEEEEECTTTTSTTCC--HHHHHHHHHH
T ss_pred --CCCHHHHHHHH-cCChHHHHHHHHH----HHHHHHHHHhhC--------CCEEEEeCchhccchhH--HHHHHHHHHH
Confidence 01234567766 5899988888765 556788899999 79999999999988776 8999999998
Q ss_pred hCCCceeeCCCCCccccccccccc-ccccccceeEeeeccc
Q 017527 316 DYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQLYP 355 (370)
Q Consensus 316 ~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 355 (370)
+...+. .....+|..+.+++ ++++|||+|++.++..
T Consensus 267 ~~~~~~----~~~~~~i~~s~lg~~ag~~GAa~la~~~~~~ 303 (310)
T 3htv_A 267 YLRRPL----PHQVVRFIAASSSDFNGAQGAAILAHQRFLP 303 (310)
T ss_dssp TSCTTT----TTTTCEEEECCCCTTHHHHHHHHHHHHHHCC
T ss_pred Hhhccc----ccCCcEEEEcCCCCcHHHHHHHHHHHHHhhc
Confidence 763221 23456777777766 7889999998655443
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-35 Score=289.61 Aligned_cols=281 Identities=11% Similarity=0.035 Sum_probs=209.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+++. .+++++++.+.+++++++++.+.++.++.+|||
T Consensus 84 ~~~~lgiDiG~t~i~~~l~d~---------~G~il~~~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gigi 151 (406)
T 1z6r_A 84 AWHYLSLRISRGEIFLALRDL---------SSKLVVEESQELAL---KDDLPLLDRIISHIDQFFIRHQKKLERLTSIAI 151 (406)
T ss_dssp TCEEEEEEEETTEEEEEEEET---------TCCEEEEEEEECCS---SCSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred ccEEEEEEEcCCEEEEEEEcC---------CCCEEEEEEecCCC---CCHHHHHHHHHHHHHHHHHhcCCCcCceeEEEE
Confidence 468999999999999999999 89999988776632 357888999999999999887766678999999
Q ss_pred eecCCCChh------------hH-HHHHHHHHhhCCCCceEEEeChHHHHHHhhc-C----CCCCeEEEEEcccceeeee
Q 017527 101 AVSGVNHPT------------DQ-QRILNWLRDIFPGNVRLYVHNDALAALASGT-M----GKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 101 gvpG~~~~~------------~~-~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~----g~~~~v~l~~GTGi~g~gi 162 (370)
++||++++. |. .+|++.|++.|+ +||+|+||+|++++++. + +.++++++++|||+ |+|+
T Consensus 152 ~~pG~vd~~~g~v~~~~~l~~w~~~~l~~~l~~~~~--~pv~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGi-G~gi 228 (406)
T 1z6r_A 152 TLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG--VPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNV-GAGV 228 (406)
T ss_dssp EESSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHS--SCEEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSE-EEEE
T ss_pred EeecCEeCCCCEEecCCCCCCccCCCHHHHHHHHHC--CCEEEechhHHHHHHHHHhcCCCCCCcEEEEEECCcE-EEEE
Confidence 999986532 22 479999999998 89999999999999874 3 45789999999998 6789
Q ss_pred ccCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHH
Q 017527 163 TEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR 236 (370)
Q Consensus 163 i~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 236 (370)
+.||++++ +|||||+..+. |..|+||..+|.+.+. +...+.+.+.+... ...... +.. .
T Consensus 229 v~~G~l~~G~~g~AGEiGh~~v~~~g~~c~cG~~gclE~~~------S~~al~~~~~~~~~-~~~~~~----~~~----~ 293 (406)
T 1z6r_A 229 ITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIA------SVDSILELAQLRLN-QSMSSM----LHG----Q 293 (406)
T ss_dssp EETTEETTTTSSCCBCGGGSBSCTTSCBCTTSCBSBTHHHH------SHHHHHHHHHHHHT-TCTTCG----GGS----S
T ss_pred EECCEEeecCCCcCccCCceEecCCCCCCCCCCccchHHHc------CHHHHHHHHHHhhh-cccccc----cCc----c
Confidence 99999864 89999998865 4556666544432211 11122222211100 000000 000 0
Q ss_pred HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh
Q 017527 237 IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD 316 (370)
Q Consensus 237 ~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~ 316 (370)
....++|+++|++||+.|.+++++++++|+..+++++++|| |+.|||||+++...+.| ++.+++.++++
T Consensus 294 -~~~~~~v~~~a~~gD~~a~~~l~~~~~~L~~~i~~l~~~ld--------P~~IvlgG~i~~~~~~l--~~~i~~~l~~~ 362 (406)
T 1z6r_A 294 -PLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN--------PQKILIGSPLSKAADIL--FPVISDSIRQQ 362 (406)
T ss_dssp -CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGHHHH--HHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEeCccchhhHHH--HHHHHHHHHHh
Confidence 12457899999999999999999999999999999999999 79999999999887666 89999999886
Q ss_pred CCCceeeCCCCCccccccccccc-ccccccce
Q 017527 317 YPGAVPIRPKVCIWPHWHSCDQA-SANCCGAA 347 (370)
Q Consensus 317 ~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 347 (370)
.... ......+..+..++ ++++|||.
T Consensus 363 ~~~~-----~~~~~~i~~s~l~~~a~~~GAa~ 389 (406)
T 1z6r_A 363 ALPA-----YSQHISVESTQFSNQGTMAGAAL 389 (406)
T ss_dssp SCHH-----HHTTCEEEECSCCCCTTTTHHHH
T ss_pred cccc-----cCCCcEEEEeCCCChHHHHHHHH
Confidence 4211 11234555555544 67899953
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=278.67 Aligned_cols=278 Identities=14% Similarity=0.069 Sum_probs=204.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++||||+|+|+++++++|. +|+++.+.+.++++. +.+++++.|.+.++++..+.+ .+.+||||
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~---------~g~il~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~----~i~~igi~ 87 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDS---------TRRLQWEKRVPTPHT---SYSAFLDAVCELVEEADQRFG----VKGSVGIG 87 (327)
T ss_dssp CEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCCS---CHHHHHHHHHHHHHHHHHHHT----SCCEEEEE
T ss_pred ceEEEEEECCCEEEEEEEeC---------CCCEEEEEEecCCCC---CHHHHHHHHHHHHHHHHHhcC----CccEEEEE
Confidence 48999999999999999999 899999888776542 578899999999998876543 47899999
Q ss_pred ecCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CCCeEEEEEcccceeeeecc
Q 017527 102 VSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 102 vpG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~~~v~l~~GTGi~g~gii~ 164 (370)
+||++++.. ..+|++.|++.|+ +||+|+||+|++++++. +| .++++++++|||+ |+|++.
T Consensus 88 ~pG~vd~~~g~v~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtGi-G~giv~ 164 (327)
T 2ap1_A 88 IPGMPETEDGTLYAANVPAASGKPLRADLSARLD--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVL 164 (327)
T ss_dssp ESSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHT--SCEEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSSE-EEEEEE
T ss_pred eeeeEECCCCEEEccCCCccCCCChHHHHHHHHC--CCEEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCcE-EEEEEE
Confidence 999976421 2478999999998 89999999999999874 43 4789999999998 678999
Q ss_pred CCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhh
Q 017527 165 DGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA 239 (370)
Q Consensus 165 dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~ 239 (370)
||++++ +|||||+..+.++.++.+.. ..+..|.|.-.. +++.+. |...+.++...... . ..
T Consensus 165 ~G~l~~G~~g~aGE~Gh~~~~~~~~~~~~~~--------~~g~~c~cG~~g-cle~~~--s~~~l~~~~~~~~~--~-~~ 230 (327)
T 2ap1_A 165 NGKPITGQSYITGEFGHMRLPVDALTLMGFD--------FPLRRCGCGQMG-CIENYL--SGRGFAWLYQHYYD--Q-SL 230 (327)
T ss_dssp TTEEECCTTSCTTCGGGSBCCHHHHHHHCTT--------SCCCBCTTSCBS-BTHHHH--SHHHHHHHHHHHHC--C-CC
T ss_pred CCEEeecCCCcccccccEEEecCcccccccc--------cCCCcCCCCchh-hHHHHh--CHHHHHHHHHHhcC--C-CC
Confidence 999875 89999988776543321110 012222222111 122222 33344433210000 0 12
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG 319 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~ 319 (370)
.+++|+++|++||+.|++++++++++|+..+.+++++|| |+.|||||+++...+ + +.++++.++++.+.
T Consensus 231 ~~~~i~~~a~~gd~~a~~il~~~~~~La~~i~~l~~~l~--------p~~IvlgG~i~~~~~-~--~~~l~~~l~~~~~~ 299 (327)
T 2ap1_A 231 QAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVD--------PDLLVIGGGLSNFTA-I--TTQLAERLPRHLLP 299 (327)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGSTH-H--HHSSGGGSGGGSCT
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeChhhcchh-H--HHHHHHHHHHhhcc
Confidence 468899999999999999999999999999999999999 799999999998753 3 44588877765431
Q ss_pred ceeeCCCCCccccccccccc-ccccccceeE
Q 017527 320 AVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 320 ~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
......+..+..++ ++++|||.++
T Consensus 300 ------~~~~~~i~~s~~~~~a~~~GAa~la 324 (327)
T 2ap1_A 300 ------VARAPRIERARHGDAGGMRGAAFLH 324 (327)
T ss_dssp ------TCCCCEEEECSCTTTHHHHHHHHTT
T ss_pred ------ccCCCEEEEcCCCCcHHHHHHHHHH
Confidence 12345566666554 6789999876
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=272.00 Aligned_cols=261 Identities=12% Similarity=0.057 Sum_probs=192.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|+|+++++++|. +|+++.+.+.+++ . +++++++.|.+.+++ .++.+||||+
T Consensus 5 ~~lgidiggt~i~~~l~d~---------~g~il~~~~~~~~--~--~~~~~~~~i~~~i~~---------~~i~gigi~~ 62 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTP---------DGKILDKTSISTP--E--NLEDLLAWLDQRLSE---------QDYSGIAMSV 62 (292)
T ss_dssp CEEEEEEETTEEEEEEECT---------TCCEEEEEEECCC--S--SHHHHHHHHHHHHTT---------SCCSEEEEEE
T ss_pred EEEEEEECCCEEEEEEECC---------CCCEEEEEEEeCC--C--CHHHHHHHHHHHHHh---------CCCcEEEEEe
Confidence 5899999999999999999 8999998887664 2 577777777666654 3688999999
Q ss_pred cCCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc---CCCCCeEEEEEcccceeeeeccCC
Q 017527 103 SGVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 103 pG~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~---~g~~~~v~l~~GTGi~g~gii~dG 166 (370)
||++++. | ..+|++.| ++|+ +||+|+||+|++++++. .+.++++++++|||+ |+|++.||
T Consensus 63 pG~vd~~~g~v~~~~~~~~~~~~~l~~~l-~~~~--~pv~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGi-G~giv~~G 138 (292)
T 2gup_A 63 PGAVNQETGVIDGFSAVPYIHGFSWYEAL-SSYQ--LPVHLENDANCVGLSELLAHPELENAACVVIGTGI-GGAMIING 138 (292)
T ss_dssp SSEECTTTCBEESCCSSGGGSSSBHHHHT-GGGC--CCEEEEEHHHHHHHHHHHHCTTCSSEEEEEESSSE-EEEEEETT
T ss_pred cCcccCCCCEEEecCCCCcccCCCHHHHH-HHcC--CCEEEechHHHHHHHHHHhcCCCCeEEEEEECCce-EEEEEECC
Confidence 9986532 1 24799999 9998 89999999999999875 366899999999998 67899999
Q ss_pred ceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhH
Q 017527 167 RDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV 241 (370)
Q Consensus 167 ~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~ 241 (370)
++++ +|||||+..+.++ + ++ .+ ++.+. |...+.++........ ....
T Consensus 139 ~l~~G~~g~aGEiGh~~~~~~~-~---------------~~---gc-----le~~~--s~~~l~~~~~~~~~~~--~~~~ 190 (292)
T 2gup_A 139 RLHRGRHGLGGEFGYMTTLAPA-E---------------KL---NN-----WSQLA--STGNMVRYVIEKSGHT--DWDG 190 (292)
T ss_dssp EEECCTTSCTTCGGGCBSSCCS-S---------------SC---CB-----HHHHH--SHHHHHHHHHHHHSSC--CCCH
T ss_pred EEEecCCCCCccceeEEeccCC-C---------------CC---Cc-----HHHhc--CHHHHHHHHHHhhCCC--CCCH
Confidence 9975 7889998876532 0 00 01 11221 2233333221000000 1145
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCce
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 321 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~ 321 (370)
++++++|++||+.|++++++++++|+..+.++++.|| |+.|||||++.. .+.| ++.+++.++++.+...
T Consensus 191 ~~v~~~a~~gd~~a~~i~~~~~~~L~~~i~~l~~~l~--------p~~IvlgG~i~~-~~~~--~~~l~~~l~~~~~~~~ 259 (292)
T 2gup_A 191 RKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLID--------PGVISLGGSISQ-NPDF--IQGVKKAVEDFVDAYE 259 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGG-CHHH--HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeCcccc-chHH--HHHHHHHHHHhhcccc
Confidence 7899999999999999999999999999999999999 799999999974 5555 8999999988643211
Q ss_pred eeCCCCCccccccccccc-ccccccceeEee
Q 017527 322 PIRPKVCIWPHWHSCDQA-SANCCGAALCRI 351 (370)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~ 351 (370)
. .....++..+..++ ++++|||++++.
T Consensus 260 ~---~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 260 E---YTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp T---CCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred c---ccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 0 00223455555544 678999988743
|
| >3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=264.78 Aligned_cols=236 Identities=17% Similarity=0.140 Sum_probs=180.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHH---HHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEK---VMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~---~i~~~l~~~~~~~~~v~ 96 (370)
..++||||+|+|+++++++|. |+++.+. +.++... +++++++.|.+ .+++++. .++.
T Consensus 8 ~~~~lgiDIGgt~i~~~l~d~----------G~il~~~~~~~~~~~---~~~~~l~~i~~~~~~i~~~~~------~~i~ 68 (366)
T 3mcp_A 8 NRIVMTLDAGGTNFVFSAIQG----------GKEIADPVVLPACAD---CLDKCLGNLVEGFKAIQAGLP------EAPV 68 (366)
T ss_dssp CCEEEEEECSSSEEEEEEEET----------TEECSCCEEEECCTT---CHHHHHHHHHHHHHHHHTTCS------SCCC
T ss_pred CCEEEEEEECcceEEEEEEEC----------CEEEEEEEEEECCCC---CHHHHHHHHHHHHHHHHHHhh------cCCe
Confidence 469999999999999999994 8888776 6665432 68889998888 5555432 5799
Q ss_pred eEEEeecCCCCh------------hhH--HHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC-----------------
Q 017527 97 AVCLAVSGVNHP------------TDQ--QRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----------------- 144 (370)
Q Consensus 97 ~IgIgvpG~~~~------------~~~--~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----------------- 144 (370)
+|||++||++++ .|. .+|++.|+++|+ +||+|+||+||++++|. +|
T Consensus 69 gIGIavPG~Vd~~~G~i~~~~nlp~w~~~~~l~~~L~~~~g--~PV~veNDanaaAlgE~~~G~~p~~~~~l~~~g~~~~ 146 (366)
T 3mcp_A 69 AISFAFPGPADYQAGIIGDLPNFPSFRGGVALGPFLEDIFG--IPVFINNDGSLFAYGEALTGVLPEINRRLREAGSTKR 146 (366)
T ss_dssp EEEEECCSSEETTTTEECCCTTCGGGTTCBCHHHHHHHHHC--SCEEEECHHHHHHHHHHHTSHHHHHHHHHHHTTCCCC
T ss_pred EEEEEecceEeCCCCEEEeCCCcccccCCCCHHHHHHHHHC--CCEEEechhhHHHHHHHHhCCCcccccccccccccCC
Confidence 999999999653 233 478999999998 89999999999999874 45
Q ss_pred CCCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCC
Q 017527 145 KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELS 219 (370)
Q Consensus 145 ~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~ 219 (370)
.++++++++|||+ |+|++.||++++ +||+||+. | .||+.+| +|.+.
T Consensus 147 ~~~~v~l~lGtGI-G~givi~G~l~~G~~g~AGEiGH~~-~-----~CG~~Gc--------------------lE~~~-- 197 (366)
T 3mcp_A 147 YKNLLGVTLGTGF-GAGVVIDGELLRGDNAAGGYVWCLR-N-----KKYPEYI--------------------VEESV-- 197 (366)
T ss_dssp CCEEEEEEESSSE-EEEEEETTEECCCTTSCTTCCTTSB-C-----SSCTTSB--------------------GGGTS--
T ss_pred CCcEEEEEECCcc-eEEEEECCEEecCCCCCCceeeccc-C-----CCCCCcc--------------------eeeee--
Confidence 4789999999998 668999999965 88999987 3 2222221 12221
Q ss_pred ChhhHHHHhccCCChHHHhhhHHHHHHHHh---cCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcC
Q 017527 220 SPDELIGWTYVDPSWARIAALVPVVVSCAE---AGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGG 295 (370)
Q Consensus 220 s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~---~GD-~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGg 295 (370)
|...+.+.........+ ....++|+++|+ +|| +.|++++++++++||..++++++++| | .|||||+
T Consensus 198 S~~al~~~~~~~~~~~~-~~~~~~i~~~a~~~~~gD~~~a~~~l~~~~~~Lg~~i~nl~~~ld--------P-~IviGGg 267 (366)
T 3mcp_A 198 SIRAVMRVYAERSGDAG-ARTPKEIFEIAEGIRPGNREAAIAAFEELGEMAGDALASAITLID--------G-LIVIGGG 267 (366)
T ss_dssp SHHHHHHHHHHHSSCCS-CCCHHHHHHHHHTSSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------S-EEEEESG
T ss_pred cHHHHHHHHHHhhCCCC-CCCHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------C-EEEEECh
Confidence 22233222110000000 123578899999 999 99999999999999999999999999 9 9999999
Q ss_pred cccCcccccchHHHHHHHHhhCC
Q 017527 296 VLEANRRWDIGREVVKCILRDYP 318 (370)
Q Consensus 296 v~~~~~~~~l~~~v~~~l~~~~p 318 (370)
++...+.| ++.+++.++++..
T Consensus 268 i~~~~~~~--~~~l~~~l~~~~~ 288 (366)
T 3mcp_A 268 LSGASKYI--LPVLLKEMNAQTG 288 (366)
T ss_dssp GGGGHHHH--HHHHHHHHHHHTT
T ss_pred hhhchHHH--HHHHHHHHHHhcc
Confidence 99988776 9999999998763
|
| >2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=267.32 Aligned_cols=286 Identities=13% Similarity=-0.015 Sum_probs=200.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+.|+||||+|||+++++++|.. .+++|+++.+.+..++ .+++.+++.|.+.++++.... +.++.+|||
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~-----~~~~g~il~~~~~~~~----~~~~~~~~~i~~~i~~~~~~~---~~~i~gigi 95 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREG-----KNDSVHACVTRYSMKR----KDITEIIEFFNEIIELMPASV---MKRVKAGVI 95 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEEC-----GGGCEEEEEEEEECTT----CBGGGHHHHHHHHHHHSCHHH---HTTEEEEEE
T ss_pred CCeEEEEEEccccEEEEEEecc-----cCCCccEEEEeeecCC----CCHHHHHHHHHHHHHHHhhcc---cccccEEEE
Confidence 3589999999999999999850 0002888887762222 146778888888887765432 246889999
Q ss_pred eecCCCCh--------hh-H-HHHHHHHHhhCCCCc-eEEEeChHHHHHHh---------------hc-C----------
Q 017527 101 AVSGVNHP--------TD-Q-QRILNWLRDIFPGNV-RLYVHNDALAALAS---------------GT-M---------- 143 (370)
Q Consensus 101 gvpG~~~~--------~~-~-~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g---------------~~-~---------- 143 (370)
|+||++++ .| + .++++.+++.|+ . ||+|+||++|++++ +. +
T Consensus 96 ~~pG~vd~g~v~~~~~~~~~~~~l~~~l~~~~~--~~pv~v~NDa~aaalge~~l~~~~~~~~~~~E~~~~~~~~~~~~~ 173 (373)
T 2q2r_A 96 NVPGPVTGGAVGGPFNNLKGIARLSDYPKALFP--PGHSAILNDLEAGGFGVLAVSDAHVFSEYFGVMWEGTQWRTCEQE 173 (373)
T ss_dssp EESSCEETTTEECCCSSSBSCEEGGGSCTTTSC--TTSEEEEEHHHHHHHHHHHHHHTTCHHHHEEEEECCTTTTTTCSS
T ss_pred EeeccccCCEEeccCCCCCCcCCHHHHHHHhcC--CCCEEEEccHhHHhccccccChhhhccccchhhcccccccccccC
Confidence 99999653 12 2 377888888888 7 99999999999998 44 3
Q ss_pred --C----CCCeEEEEEcccceeeeeccCCceE-----eeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHH
Q 017527 144 --G----KLHGCVLIAGTGTIAYGFTEDGRDA-----RAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNI 212 (370)
Q Consensus 144 --g----~~~~v~l~~GTGi~g~gii~dG~l~-----~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~ 212 (370)
| .++++++++|||+ |+|++.||+++ .+||+||+..+.++.|+||+..+... ..+ . +
T Consensus 174 ~~g~~~~~~~~~~v~~GTGi-G~gii~~g~l~~G~~~~aGE~Gh~~~~~~~~c~cg~~l~~~~----~~~----g----~ 240 (373)
T 2q2r_A 174 PAGSVIGRGRCLVLAPGTGL-GSSLIYYNPPMNQHIVVPLELGSQTLPMRKDIDYIQTLHAEL----KLF----P----N 240 (373)
T ss_dssp CTTSSCCSSCEEEEEESSSE-EEEEEEECC---CEEEEEECGGGSBCCCSSCHHHHHHHHHHH----TSC----C----B
T ss_pred CCcCcCCCCCEEEEEeCCce-eEEEEecCcccCCCcccccccceeecCCCCCcchhHHHHHHh----hcc----c----c
Confidence 4 3689999999998 66899999874 49999999887765599998654321 111 1 1
Q ss_pred HHHcCCCChhhHHHHhc---cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc
Q 017527 213 LSTLELSSPDELIGWTY---VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP 289 (370)
Q Consensus 213 ~~~~~~~s~~~l~~~~~---~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~ 289 (370)
+|.+. |...+...+. .... . ...+++|+++|.+||+.|++++++++++|+..+.++++++| |+.
T Consensus 241 lE~~~--S~~~l~~~~~~~~~~~~-~--~~~~~~i~~~a~~gD~~a~~~l~~~~~~L~~~i~~l~~~l~--------p~~ 307 (373)
T 2q2r_A 241 YENMV--SGAGLEFHYRQVVRGSR-P--PCSAGEIAKLASEGDANACKAMKKYHEYLMRVGSEASMALL--------PLT 307 (373)
T ss_dssp HHHHS--SHHHHHHHHHHHHTTSS-C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSE
T ss_pred HhHhc--CHHHHHHHHHHHhcCCC-C--CCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCE
Confidence 23332 3333332211 0000 0 12467899999999999999999999999999999999999 799
Q ss_pred EEEEcC-cccCcccccchH--HHHHHHHhhCCCce-eeCCCCCcccccccccc-cccccccceeE
Q 017527 290 LVMVGG-VLEANRRWDIGR--EVVKCILRDYPGAV-PIRPKVCIWPHWHSCDQ-ASANCCGAALC 349 (370)
Q Consensus 290 VVlgGg-v~~~~~~~~l~~--~v~~~l~~~~p~~~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~ 349 (370)
|||+|| +... +.| ++ .+++.+++++.... ...+..+...+..+..+ +++++|||+++
T Consensus 308 IvlgGG~~~~~-~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~a~l~GAa~l~ 369 (373)
T 2q2r_A 308 IVLVGDNIVNN-AFF--YRNPQNLKEMHHEALNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCG 369 (373)
T ss_dssp EEECSHHHHHT-HHH--HHSHHHHHHHHHHHTCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHH
T ss_pred EEEeCChHhCc-hhh--hcchhHHHHHHHHHhhcccchhhhhcCCcEEEEecCCchhHHHHHHHH
Confidence 999888 6555 665 78 88888887653221 01222345566666544 47899999876
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-31 Score=254.92 Aligned_cols=279 Identities=14% Similarity=0.010 Sum_probs=183.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+.|+||||+|||+++++++|.. +|+++.+.+.++... +.+.+.+++++++.+ .++.+|||
T Consensus 13 ~~~~lgiDiGGT~i~~~l~dl~--------~g~i~~~~~~~~~~~---------~~~~~~i~~~~~~~~---~~i~gigi 72 (332)
T 1sz2_A 13 TKYALVGDVGGTNARLALCDIA--------SGEISQAKTYSGLDY---------PSLEAVIRVYLEEHK---VEVKDGCI 72 (332)
T ss_dssp -CEEEEEEEETTEEEEEEEETT--------TCCEEEEEEEEGGGC---------SCHHHHHHHHHHHSC---CCCCEEEE
T ss_pred CCEEEEEEechhheEEEEEECC--------CCcEEEEEEecCCCc---------CCHHHHHHHHHHhcC---CCccEEEE
Confidence 4599999999999999999941 588887766655322 123344555555543 36889999
Q ss_pred eecCCCChh--------hHHHHHHHHHhhCCCCce-EEEeChHHHHHHhhc-C--------------CCCCeEEEEEccc
Q 017527 101 AVSGVNHPT--------DQQRILNWLRDIFPGNVR-LYVHNDALAALASGT-M--------------GKLHGCVLIAGTG 156 (370)
Q Consensus 101 gvpG~~~~~--------~~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~-~--------------g~~~~v~l~~GTG 156 (370)
|+||++++. |..+ .+.|+++|+ +| |+|+||+||+++++. + +.+++++|++|||
T Consensus 73 ~~pG~vd~~~~~~~nl~w~~~-~~~l~~~~~--~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTG 149 (332)
T 1sz2_A 73 AIACPITGDWVAMTNHTWAFS-IAEMKKNLG--FSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTG 149 (332)
T ss_dssp EESSCCCSSEECCSSSCCCEE-HHHHHHHHT--CSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSS
T ss_pred EEeCceeCCEEeeeCCCCcCC-HHHHHHHhC--CCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCcc
Confidence 999997642 2235 578999998 87 999999999999884 2 3378999999999
Q ss_pred ceeeeeccCCce---EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc---c
Q 017527 157 TIAYGFTEDGRD---ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---V 230 (370)
Q Consensus 157 i~g~gii~dG~l---~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~---~ 230 (370)
+ |+|+++||+. ..+||+||+..+..+..++.. |. ......|+. ++|.|. |...+...+. .
T Consensus 150 i-G~giv~~g~~G~~g~agE~GH~~v~~~~~~~~~l--~~-~~c~~~g~g--------clE~~~--S~~~l~~~~~~~~~ 215 (332)
T 1sz2_A 150 L-GVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAII--LE-ILRAEIGHV--------SAERVL--SGPGLVNLYRAIVK 215 (332)
T ss_dssp E-EEEEEEEETTEEEEEECCGGGSBCCCCSHHHHHH--HH-HHHHHSSSC--------BGGGTS--SHHHHHHHHHHHHH
T ss_pred c-eEEEEecCCCCeeeCCCCccccCcCCCChHHHHH--HH-HHHhccCCc--------chhhhc--cHHHHHHHHHHHhh
Confidence 8 6678888762 349999998776544321110 00 000011211 122332 3333322211 0
Q ss_pred -CCChHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc-EEEEcCcccCcccccch-
Q 017527 231 -DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEANRRWDIG- 306 (370)
Q Consensus 231 -~~~~~~~a~~~~~v~~~A~~G-D~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~-VVlgGgv~~~~~~~~l~- 306 (370)
.... .....+++|+++|++| |+.|++++++++++||..+++++++|| |+. ||||||++.....+ +.
T Consensus 216 ~~~~~-~~~~~~~~i~~~a~~G~D~~A~~~~~~~~~~Lg~~i~~l~~~l~--------P~~gvvigGGi~~~~~~~-l~~ 285 (332)
T 1sz2_A 216 ADNRL-PENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLG--------TFGGVFIAGGIVPRFLEF-FKA 285 (332)
T ss_dssp HTTCC-CCCCCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--------CTTEEEEECSSSGGGHHH-HHH
T ss_pred ccCCC-ccCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCeEEEEEChhhhhHHHH-hcc
Confidence 0000 0012467899999999 999999999999999999999999999 798 99999999764444 24
Q ss_pred HHHHHHHHhhCCCceeeCCCCCcccccccccccccccccceeEe
Q 017527 307 REVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALCR 350 (370)
Q Consensus 307 ~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (370)
+.+++.+++...... ..+...+..+..++++++|||++++
T Consensus 286 ~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~a~l~GAa~l~~ 325 (332)
T 1sz2_A 286 SGFRAAFEDKGRFKE----YVHDIPVYLIVHDNPGLLGSGAHLR 325 (332)
T ss_dssp SSHHHHHHCCGGGHH----HHTTCCEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCchhh----HHhCceEEEEECCchhHHHHHHHHH
Confidence 358888865211111 0112223333344577999998863
|
| >1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=248.83 Aligned_cols=270 Identities=15% Similarity=0.104 Sum_probs=195.5
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHH---HHHHHHHHHHcCCCccCcceE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETI---EKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l---~~~i~~~l~~~~~~~~~v~~I 98 (370)
.++||||+|+|+++++++|. + +++.+.+.+++.....+++.+++++ .+.+.+++++.+.+..++.+|
T Consensus 2 ~~vlgidiGgt~ik~al~d~---------~-~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~gI 71 (381)
T 1saz_A 2 FRILTINPGSTSTKLSIFED---------E-RMVKMQNFSHSPDELGRFQKILDQLEFREKIARQFVEETGYSLSSFSAF 71 (381)
T ss_dssp CEEEEEEECSSEEEEEEEET---------T-EEEEEEEEECCHHHHHTCSSGGGGHHHHHHHHHHHHHTTTCCGGGCSEE
T ss_pred CeEEEEECCccceeEEEEec---------c-hheeeeecccCcccccchhhHHHHHHHHHHHHHHHHHHcCCCccCceEE
Confidence 37999999999999999998 5 8888877665321000123345555 778888888777666789999
Q ss_pred EEeecCCCChhh--------------------------HHHHHHHHHhhCCCCceEEEeChHH---------HHHH----
Q 017527 99 CLAVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHNDAL---------AALA---- 139 (370)
Q Consensus 99 gIgvpG~~~~~~--------------------------~~~l~~~L~~~f~~~~pV~V~NDa~---------aa~~---- 139 (370)
|++||++++.. ..++++.|++.|+ +||+|+||+| ++++
T Consensus 72 -i~~pG~vd~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~~~l~~~l~~~~~--~Pv~v~NDan~~~~~~~a~aaalp~~~ 148 (381)
T 1saz_A 72 -VSRGGLLDPIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSETG--VPAYVVDPVVVDEMEDVARVSGHPNYQ 148 (381)
T ss_dssp -EEECCSCSCBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHHC--CCEEEESCTTBCCCCGGGTBCSSTTCB
T ss_pred -EecCCCCCCCCCceEecCHHHHHHHHhcccccChhhhhHHHHHHHHHhcC--CCEEEeCCCccccCcHHHHHcCCcchh
Confidence 99999865321 3578889999998 8999999999 8877
Q ss_pred -------------hh-c-C----CCC--CeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHHHHH--HH
Q 017527 140 -------------SG-T-M----GKL--HGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAA--QA 191 (370)
Q Consensus 140 -------------g~-~-~----g~~--~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~iG~--~~ 191 (370)
++ . + +.+ +++++++|||+ |+|++.||++++ +|| ||+..+..+.|.||. ..
T Consensus 149 r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGi-G~g~i~~G~~~~G~~g~agE-Gh~~~~~~g~c~cg~l~~g 226 (381)
T 1saz_A 149 RKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGI-SIAAHRKGRVIDVNNALDGD-GPFTPERSGTLPLTQLVDL 226 (381)
T ss_dssp CCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSE-EEEEEETTEEEEECCGGGTC-SSCCSSCCCSCCHHHHHHH
T ss_pred hhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCc-EEEEEECCEEEEecCCCCCC-cceeeccCCCCCCcHHHHH
Confidence 66 3 2 334 89999999998 667889999865 678 999876533366665 33
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHH--HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 017527 192 LTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWAR--IAALVPVVVSCAEAGDEVANKILQDSVEELALS 269 (370)
Q Consensus 192 ~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~--~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~ 269 (370)
|. +... |...+..+......... -....++|+++|++||+.|++++++++++|+..
T Consensus 227 c~------e~~~----------------S~~~l~~~~~~~~g~~~~~~~~~~~~i~~~a~~gd~~a~~~l~~~~~~la~~ 284 (381)
T 1saz_A 227 CF------SGKF----------------TYEEMKKRIVGNGGLVAYLGTSDAREVVRRIKQGDEWAKRVYRAMAYQIAKW 284 (381)
T ss_dssp HT------SSCC----------------CTTGGGSTTTTSCTHHHHHSCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH------HhCC----------------CHHHHHHHHHhccCccccccCCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 31 2111 22222221111000000 012467899999999999999999999999999
Q ss_pred HHHHHHHh--ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccc
Q 017527 270 VKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGA 346 (370)
Q Consensus 270 l~~vv~~l--~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~ 346 (370)
+.++++.| | |+.||||||++...+.+ .+.+++.+++..| ..+..++.++ ++++|||
T Consensus 285 i~~l~~~l~~~--------p~~IvlgGgi~~~~~~l--~~~i~~~l~~~~~-----------~~i~~~~~~~~a~~~GAa 343 (381)
T 1saz_A 285 IGKMAAVLKGE--------VDFIVLTGGLAHEKEFL--VPWITKRVSFIAP-----------VLVFPGSNEEKALALSAL 343 (381)
T ss_dssp HHHHHHHTTTC--------CSEEEEEEGGGGCTTTH--HHHHHHHHTTTSC-----------EEEEEBCCHHHHHHHHHH
T ss_pred HHHHHHHhcCC--------CCEEEEeCcCccChHHH--HHHHHHHHHhhcC-----------eEEEecCcchhHHHHHHH
Confidence 99999999 8 79999999999886555 8999999977431 2344455554 6789999
Q ss_pred eeE
Q 017527 347 ALC 349 (370)
Q Consensus 347 ~~~ 349 (370)
+++
T Consensus 344 ~l~ 346 (381)
T 1saz_A 344 RVL 346 (381)
T ss_dssp HHH
T ss_pred HHH
Confidence 886
|
| >1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=230.78 Aligned_cols=228 Identities=17% Similarity=0.075 Sum_probs=167.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCC-CCeEEE-EEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLAR-AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~-g~il~~-~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
.|+||||+|+|+++++++|. + |+++.+ .+.+++.. .+++++++.+.+.+++++++... ...+.+||
T Consensus 12 ~~~lgidiggt~i~~~l~dl---------~~g~i~~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~-~~~~~~ig 79 (267)
T 1woq_A 12 APLIGIDIGGTGIKGGIVDL---------KKGKLLGERFRVPTPQP--ATPESVAEAVALVVAELSARPEA-PAAGSPVG 79 (267)
T ss_dssp CCEEEEEECSSEEEEEEEET---------TTTEEEEEEEEEECCSS--CCHHHHHHHHHHHHHHHHTSTTC-CCTTCCEE
T ss_pred CEEEEEEECCCEEEEEEEEC---------CCCeEEEEEEecCCCcc--CCHHHHHHHHHHHHHHHHHhccc-cCccceEE
Confidence 37999999999999999998 5 677743 34444322 36889999999999998764431 13456899
Q ss_pred EeecCCCC-------h----hh-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CC----CC-CeEEEEEcccceeee
Q 017527 100 LAVSGVNH-------P----TD-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MG----KL-HGCVLIAGTGTIAYG 161 (370)
Q Consensus 100 IgvpG~~~-------~----~~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g----~~-~~v~l~~GTGi~g~g 161 (370)
||+||+++ | .| ..+|++.|+++|+ +||+++||+||++++|. +| .+ +++++++|||+ |+|
T Consensus 80 i~~pG~v~~g~v~~~~~l~~~w~~~~l~~~l~~~~~--~pV~v~NDanaaalaE~~~g~~~~~~~~~~~l~~GtGI-G~g 156 (267)
T 1woq_A 80 VTFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLG--RPVEVINDADAAGLAEARYGAGAGVKGTVLVITLGTGI-GSA 156 (267)
T ss_dssp EEESSCEETTEECCCTTSCGGGTTCBHHHHHHHHHT--SCEEEEEHHHHHHHHHHHHSTTTTCCSEEEEEEESSSE-EEE
T ss_pred EEccceEcCCEEEeCCCCCCCCCCCCHHHHHHHHHC--CCEEEeehhHHHHHHHHHhCCCCCCCCcEEEEEECcce-EEE
Confidence 99999853 1 23 2589999999998 89999999999999874 33 34 47899999997 778
Q ss_pred eccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhH
Q 017527 162 FTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV 241 (370)
Q Consensus 162 ii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~ 241 (370)
++.||++++.||+||+..+.. . +|.|. |...+.
T Consensus 157 iv~~G~l~~GgEiGh~~v~~~------------------------~-----lE~~~--S~~~l~---------------- 189 (267)
T 1woq_A 157 FIFDGKLVPNAELGHLEIDGH------------------------D-----AETKA--SAVARE---------------- 189 (267)
T ss_dssp EEETTEEETTCCGGGCEETTE------------------------E-----HHHHH--SHHHHH----------------
T ss_pred EEECCEEccCceeeeEEecCc------------------------c-----HHHHh--CHHHHh----------------
Confidence 999999999999999865421 0 12221 111110
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCce
Q 017527 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 321 (370)
Q Consensus 242 ~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~ 321 (370)
+ . ...+++++++|+..+++++++|| |+.|||||+++...+.| ++.++
T Consensus 190 ----~---~-----~~~~~~~~~~l~~~l~~l~~~ld--------P~~IvlgG~i~~~~~~~--~~~~~----------- 236 (267)
T 1woq_A 190 ----R---D-----GLSWDEYSVLLQRYFSHVEFLFS--------PELFIVGGGISKRADEY--LPNLR----------- 236 (267)
T ss_dssp ----H---T-----TCCHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGGGGT--GGGCC-----------
T ss_pred ----h---c-----chhHHHHHHHHHHHHHHHHHHcC--------CCEEEEeChhhcccHHH--HHhhc-----------
Confidence 0 0 12378899999999999999999 79999999999887665 55443
Q ss_pred eeCCCCCccccccccccc-ccccccceeEe
Q 017527 322 PIRPKVCIWPHWHSCDQA-SANCCGAALCR 350 (370)
Q Consensus 322 ~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~ 350 (370)
....+..+..++ ++++|||+++.
T Consensus 237 ------~~~~i~~s~l~~~a~~~GAa~l~~ 260 (267)
T 1woq_A 237 ------LRTPIVPAVLRNEAGIVGAAIEIA 260 (267)
T ss_dssp ------CSSCEEECSCSTTHHHHHHHHHHH
T ss_pred ------cCceEEECCcCCcHHHHHHHHHHH
Confidence 123455555544 67899998873
|
| >3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=214.88 Aligned_cols=195 Identities=12% Similarity=0.017 Sum_probs=142.1
Q ss_pred cCCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 18 ~~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
|.++++++|||+|||+++ ++|. +|++. .+.+++.. .+++++++.+.+.+++ . ++.+
T Consensus 2 m~~~~~~lgiDIGGT~i~--~~d~---------~g~~~--~~~~t~~~--~~~~~~~~~i~~~i~~----~-----~i~g 57 (226)
T 3lm2_A 2 MAEDQTVLAIDIGGSHVK--IGLS---------TDGEE--RKVESGKT--MTGPEMVAAVTAMAKD----M-----TYDV 57 (226)
T ss_dssp CGGGCCEEEEEECSSEEE--EEET---------TTCCE--EEEECCTT--CCHHHHHHHHHHHTTT----C-----CCSE
T ss_pred CCcCCEEEEEEECCCEEE--EEEC---------CCCEE--EEEECCCC--CCHHHHHHHHHHHHHh----C-----CCCE
Confidence 445669999999999999 4677 67773 33344322 3677777777665543 1 5889
Q ss_pred EEEeecCCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeecc
Q 017527 98 VCLAVSGVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 98 IgIgvpG~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~ 164 (370)
||||+||++++. | ..+| +++|+ .||+|+||+||+++++.+. .+++++++|||+ |+|++.
T Consensus 58 igi~~pG~Vd~~~~~~~~~nl~~~w~~~~l----~~~~~--~pv~v~NDanaaalge~~~-~~~~~l~~GtGi-G~gii~ 129 (226)
T 3lm2_A 58 IAMGYPGPVVHNKPLREPVNLGEGWVGYDY----EGAFG--RPVRIVNDALMQAIGSYNG-GRMLFLGLGTGL-GAAMIV 129 (226)
T ss_dssp EEEEESSCEETTEECSCCTTSCSCCTTCCH----HHHHT--SCEEEEEHHHHHHHHHCCS-SEEEEEEESSSE-EEEEEE
T ss_pred EEEEEEeEEECCeEEEECCcCCccccCCch----HHhcC--CeEEEEEHHHHHHHHHhhc-CcEEEEEeCCce-EEEEEE
Confidence 999999996532 1 1234 46777 8999999999999998654 589999999998 668999
Q ss_pred CCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHH
Q 017527 165 DGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVV 244 (370)
Q Consensus 165 dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v 244 (370)
||++++ ||+||+..+.+ .++|.|. |...+.+
T Consensus 130 ~G~l~~-GEiGH~~v~~~----------------------------gclE~~~--s~~al~~------------------ 160 (226)
T 3lm2_A 130 ENVAQP-MEIAHLPYRKG----------------------------KTYEHYV--SEAYREK------------------ 160 (226)
T ss_dssp TTEEEE-ECCTTSEEETT----------------------------EEHHHHT--CHHHHHH------------------
T ss_pred CCEEee-eeeeeEEecCC----------------------------CcHHHHh--CHHHHHH------------------
Confidence 999998 99999865432 0133343 3222211
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 245 VSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 245 ~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
.+ + ++++++|+.++++++++|| |+.|||||+++...+.| .+.+++.+++
T Consensus 161 --~~---~-------~~~~~~L~~~la~l~~~~d--------P~~IVlGG~~~~~~~~~--~~~i~~~~~~ 209 (226)
T 3lm2_A 161 --KG---N-------AKWQKRVQDVVERLSAALE--------PDEVVIGGGNVERLENL--PPKCRRGDNA 209 (226)
T ss_dssp --HC---H-------HHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGCCCC--CTTEEECCTT
T ss_pred --HH---H-------HHHHHHHHHHHHHHHHHHC--------CCEEEEeChhhhhhhHH--HHHHHHHHHH
Confidence 11 1 4677899999999999999 79999999999998876 6666655544
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=209.24 Aligned_cols=293 Identities=8% Similarity=-0.022 Sum_probs=186.5
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCe---EEEEEecCCCc-cccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV---LARAAAGCSNH-NSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i---l~~~~~~~~n~-~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.+.+||||+|||++|+++++. +|++ +.+.+.+.+.. ...+.+++++.|.++|++++++.+....+..
T Consensus 60 ~G~~laiDlGGTnirv~lV~~---------~G~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~~~~~~ 130 (457)
T 2yhx_A 60 AGSFLAIVMGGGDLEVILISL---------AGRQESSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSSXAGSV 130 (457)
T ss_dssp CEEEEEEEECSSEEEEEEEEE---------ETTEEEEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSSCSSCE
T ss_pred cceEEEEEeCCCeEEEEEEEe---------CCCeeEEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHhhccccccccc
Confidence 568899999999999999998 7888 44444444322 2236789999999999999987653323333
Q ss_pred eEEEeecCCCC---h------hh--HH------HHHHHHHhhC---CCCce---EEEeChHHHHHHhhc-CCCCCeEEEE
Q 017527 97 AVCLAVSGVNH---P------TD--QQ------RILNWLRDIF---PGNVR---LYVHNDALAALASGT-MGKLHGCVLI 152 (370)
Q Consensus 97 ~IgIgvpG~~~---~------~~--~~------~l~~~L~~~f---~~~~p---V~V~NDa~aa~~g~~-~g~~~~v~l~ 152 (370)
.+||++|++.+ . .| .+ ++.++|++.+ + .| |.|.||+|++++++. .+.++.+++|
T Consensus 131 ~lGi~fs~P~~q~~~~~g~l~~wtKgf~i~~~~~v~~~L~~~l~r~g--lpv~vval~NDa~~tll~e~~~~~~~~igli 208 (457)
T 2yhx_A 131 PLGFTFXEAGAKEXVIKGQITXQAXAFSLAXLXKLISAMXNAXFPAG--DXXXSVADIXDSHGILXXVNYTDAXIKMGII 208 (457)
T ss_dssp EEEEECCSCCCCSBTTCCBCSSCCTTCCCSSCSSBHHHHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHHCTTEEEEEE
T ss_pred ceeeEEEEEEEEeecCceEEEeeccCCCcchhHHHHHHHHHhHhhcC--CcceeEEEEecchhhccchhhcCCccEEEEE
Confidence 44555555432 1 13 22 7888888887 6 67 999999999999985 5678899999
Q ss_pred EcccceeeeeccCC----ce------------EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCch---------
Q 017527 153 AGTGTIAYGFTEDG----RD------------ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM--------- 207 (370)
Q Consensus 153 ~GTGi~g~gii~dG----~l------------~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~--------- 207 (370)
+|||++| +++.++ ++ .-++||||+ ++.+.-.- ++..-...|+..+.+.
T Consensus 209 lGTGvgg-~~i~~~~~i~kl~~~~~~~~~g~~~in~EwG~f-~~~~~~lp-----~t~~D~~lD~~s~~pGq~fEkm~SG 281 (457)
T 2yhx_A 209 FGSGVNA-AYWCDSTXIGDAADGGXXGGAGXMXICCDQSSF-RKAFPSLP-----QIXYLXTLNXXSPXAXKTFXKNSXA 281 (457)
T ss_dssp ESSSEEE-EEEECGGGSSCTTSCSSSCSSCCEEEECCCTTT-TTTCSSSC-----CCHHHHHHHHHSSCSCCHHHHHHCG
T ss_pred ECcEEEE-EEEECCCcccccccccccccCCceEEEEEcccC-CCCCCcCC-----ccccccccccccCchHHHHHHHhhh
Confidence 9999955 687877 32 348999998 43221100 0000011111111111
Q ss_pred --h---HHHHHHH-cC-----------------CCChhhHHHHhccCCChHHHhhhHHHHH-HHHh----cCC-----HH
Q 017527 208 --L---TSNILST-LE-----------------LSSPDELIGWTYVDPSWARIAALVPVVV-SCAE----AGD-----EV 254 (370)
Q Consensus 208 --l---~~~~~~~-~~-----------------~~s~~~l~~~~~~~~~~~~~a~~~~~v~-~~A~----~GD-----~~ 254 (370)
| .+.++.. +. +.+ .++.....+.. ..+ ..++.++ +.+. .+| +.
T Consensus 282 ~yLGel~R~il~~~~~~~~lf~~~~~~l~~~~~~~t--~~ls~i~~d~~-~~l-~~~~~il~~~~~~~~t~~D~~~v~~i 357 (457)
T 2yhx_A 282 KNXGQSLRDVLMXFKXXGQXHXXXAXSFXAANVENT--SYPAKIQKLPH-FDL-RXXXDLFXGDQGIAXKTXMKXVVRRX 357 (457)
T ss_dssp GGHHHHHHHHHHHHHHTTSSSSSCCCSCCSTTCSCT--HHHHHHHHCCS-SSC-HHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcccccccccchhcccccCcCh--HHHHHHhcCCc-hhh-hHHHHHHHHHhCCCccchhhHHHHHH
Confidence 1 1111111 00 000 00111110100 000 1145666 6666 778 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC--CCcccc
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK--VCIWPH 332 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~--~~~~~~ 332 (370)
|..+.+|+++.+|.+|+++++.+++ ++..|+++||+ +.++.| .+.+++.+++.++... |. -..+.+
T Consensus 358 a~~V~~RaA~l~A~~iaai~~~~~~------~~~~V~vdGsv-~~~p~f--~~~l~~~l~~l~~~~~---~~~~~~~v~~ 425 (457)
T 2yhx_A 358 LFLIAAYAFRLVVCXIXAICQKKGY------SSGHIAAXGSX-RSYSGF--SXNSATXNXNIYGWPQ---SAXXSKPIXI 425 (457)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTC------SSEEEEEESTT-TTSTTH--HHHHHHHHHHHHCCCC---SSGGGSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC------CcEEEEEECCc-ccCchH--HHHHHHHHHHhhCccc---ccccCcceEE
Confidence 9999999999999999999999992 23899999999 999887 9999999998653221 11 124555
Q ss_pred cccccccccccccceeE
Q 017527 333 WHSCDQASANCCGAALC 349 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (370)
..++++. ..|||-++
T Consensus 426 ~~~~dgs--g~GAAl~a 440 (457)
T 2yhx_A 426 TPAIDGX--GAASXVIX 440 (457)
T ss_dssp EECCCTT--THHHHHHH
T ss_pred EECCCch--hhhHHHHH
Confidence 5555555 78886655
|
| >1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=208.02 Aligned_cols=289 Identities=15% Similarity=0.122 Sum_probs=183.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC-C----e-EEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL-P----V-LARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g-~----i-l~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+++|+||+|||++|++++++ +| + + ..+...|+ +....+.+++++.|.++|++++++.+... +
T Consensus 67 ~G~~lalDlGGTn~Rv~~V~l---------~G~~~~~~i~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~~l~~~~~~~-~ 135 (451)
T 1bdg_A 67 TGNFLALDLGGTNYRVLSVTL---------EGKGKSPRIQERTYCIPA-EKMSGSGTELFKYIAETLADFLENNGMKD-K 135 (451)
T ss_dssp CEEEEEEEESSSSEEEEEEEE---------CC-CCCCEEEEEEECCCT-TTTTSBHHHHHHHHHHHHHHHHHHTTCCS-S
T ss_pred cceEEEEEeCCCeEEEEEEec---------CCCCcceEEEEEEEecCC-cccCCCHHHHHHHHHHHHHHHHHhcCCCc-c
Confidence 468999999999999999998 67 5 4 33444443 22234679999999999999999877543 3
Q ss_pred cceEEEeecCCCCh---h------h----------HHHHHHHHHhhC---CCCceE---EEeChHHHHHHhhc-CCCCCe
Q 017527 95 VRAVCLAVSGVNHP---T------D----------QQRILNWLRDIF---PGNVRL---YVHNDALAALASGT-MGKLHG 148 (370)
Q Consensus 95 v~~IgIgvpG~~~~---~------~----------~~~l~~~L~~~f---~~~~pV---~V~NDa~aa~~g~~-~g~~~~ 148 (370)
...+|++.|++.+. . | +.++.+.|++.+ + .|| .|.||++++++++. .+.++.
T Consensus 136 ~~~lG~tfsfPv~q~~~~~G~l~~wtKgf~~~~~~g~dv~~~L~~al~r~~--l~v~v~al~NDtv~tlla~~y~~~~~~ 213 (451)
T 1bdg_A 136 KFDLGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDKRE--LNVKCVAVVNDTVGTLASCALEDPKCA 213 (451)
T ss_dssp CEEEEEEECSCEEEETTTEEEECCCCTTCCCBTCTTSBHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHTTCTTEE
T ss_pred ccceEEEEeeEeccccCCCeEEeccccccCCCCCCCCcHHHHHHHHHHHcC--CCcceEEEEEchHHHHHHhcccCCCcE
Confidence 47899999999653 1 2 236777777777 5 677 99999999999875 566788
Q ss_pred EEEEEcccceeeeeccCCce------------EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcC---CC------CCch
Q 017527 149 CVLIAGTGTIAYGFTEDGRD------------ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG---RG------PDTM 207 (370)
Q Consensus 149 v~l~~GTGi~g~gii~dG~l------------~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg---~~------~~~~ 207 (370)
+++|+|||+++ +++.+++. .-..|||++ ++.+.- ..-+......+.+..+ .. +...
T Consensus 214 iglIlGTG~na-~yve~~~~i~~~~g~~~g~m~In~EwG~f-~~~~~~-~~p~t~~D~~lD~~s~~pg~q~~Ek~~SG~y 290 (451)
T 1bdg_A 214 VGLIVGTGTNV-AYIEDSSKVELMDGVKEPEVVINTEWGAF-GEKGEL-DCWRTQFDKSMDIDSLHPGKQLYEKMVSGMY 290 (451)
T ss_dssp EEEEESSSEEE-EEEEETTTCGGGCSCSSSEEEEECCGGGT-TTTSTT-TTTCCHHHHHHHHTSSSTTSCTTHHHHSHHH
T ss_pred EEEEEeCCcce-EEEEcCccccCcCCCccCcEEEecCcccC-CCcccc-cCCCCcchhhhhhcCCCCCcccchhhhhhhH
Confidence 99999999955 67788764 224556654 211100 0000000000000000 00 0001
Q ss_pred ---hHHHHHHHc-------------------CCCChhhHHHHhccCCChHHHhhhHHHHHHH-Hh-----cCC-----HH
Q 017527 208 ---LTSNILSTL-------------------ELSSPDELIGWTYVDPSWARIAALVPVVVSC-AE-----AGD-----EV 254 (370)
Q Consensus 208 ---l~~~~~~~~-------------------~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~-A~-----~GD-----~~ 254 (370)
+.+.++..+ .+++ ..+.....+.. ..+ ..++.+++. +. .+| +.
T Consensus 291 Lgel~R~~l~~~~~~~~lf~~~~~~~l~~~~~l~t--~~ls~i~~d~~-~~~-~~~~~i~~~~~~~~~~~~~d~~~~~~v 366 (451)
T 1bdg_A 291 LGELVRHIIVYLVEQKILFRGDLPERLKVRNSLLT--RYLTDVERDPA-HLL-YNTHYMLTDDLHVPVVEPIDNRIVRYA 366 (451)
T ss_dssp HHHHHHHHHHHHHHTTSSGGGCCCSGGGSTTCSCT--THHHHHTTCCT-TCC-HHHHHHHHHTSCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccccchHhhcCCCccch--HHHhhhhccCc-cch-HHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 111111111 1101 11111111110 000 123667766 54 678 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc--cEEEEcCcccCcccccchHHHHHHHHhhC-CCceeeCCCCCccc
Q 017527 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF--PLVMVGGVLEANRRWDIGREVVKCILRDY-PGAVPIRPKVCIWP 331 (370)
Q Consensus 255 A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~--~VVlgGgv~~~~~~~~l~~~v~~~l~~~~-p~~~~~~p~~~~~~ 331 (370)
|..+++++++++|.+++++++.++ |+ .|+++||+++.++.| .+.+++.+++.. |.+ +
T Consensus 367 a~~V~~RaA~lla~~ia~i~~~~~--------~~~~~V~i~Ggv~~~~~~~--~~~l~~~l~~~~~~~~----------~ 426 (451)
T 1bdg_A 367 CEMVVKRAAYLAGAGIACILRRIN--------RSEVTVGVDGSLYKFHPKF--CERMTDMVDKLKPKNT----------R 426 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEEEESHHHHHCTTH--HHHHHHHHHHHSCTTC----------E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--------CCceEEEEeCchhcCchhH--HHHHHHHHHHHhCCCC----------c
Confidence 999999999999999999999999 57 888999999999887 999999999874 311 2
Q ss_pred ccccccccccccccceeE
Q 017527 332 HWHSCDQASANCCGAALC 349 (370)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~ 349 (370)
|.....++.+.+|||.++
T Consensus 427 i~~~l~~dgs~iGAAllA 444 (451)
T 1bdg_A 427 FCLRLSEDGSGKGAAAIA 444 (451)
T ss_dssp EEEEECTTHHHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHH
Confidence 222222334488888766
|
| >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=225.00 Aligned_cols=291 Identities=16% Similarity=0.129 Sum_probs=185.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC----e-EEEEEecCCCc-cccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP----V-LARAAAGCSNH-NSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~----i-l~~~~~~~~n~-~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+.+||||+|||++|+++++. +|+ + +.+.+.+++.. ...+.+++++.|.++|++++++.+....
T Consensus 77 ~G~~laiDlGGTnirv~lv~~---------~G~~~~~i~~~~~~~~ip~~~~~~~~~~lf~~Ia~~i~~~l~~~~~~~~- 146 (917)
T 1cza_N 77 KGDFIALDLGGSSFRILRVQV---------NHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKDK- 146 (917)
T ss_dssp CEEEEEEEESSSSEEEEEEEE---------EEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCTTS-
T ss_pred cceEEEEEeCCCeEEEEEEEe---------cCCCcceEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHhcCCCCC-
Confidence 468999999999999999998 665 5 55555555421 1136789999999999999987765432
Q ss_pred cceEEEeecCCCCh---h------h----------HHHHHHHHHhhCC----C-CceEEEeChHHHHHHhhc-CCCCCeE
Q 017527 95 VRAVCLAVSGVNHP---T------D----------QQRILNWLRDIFP----G-NVRLYVHNDALAALASGT-MGKLHGC 149 (370)
Q Consensus 95 v~~IgIgvpG~~~~---~------~----------~~~l~~~L~~~f~----~-~~pV~V~NDa~aa~~g~~-~g~~~~v 149 (370)
...+||++|++.+. . | +.++.+.|++.+. . ..||.|.||++|++++++ .+.++.+
T Consensus 147 ~~~lGi~fs~P~~q~~~~~G~l~~wtkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~~~~~i 226 (917)
T 1cza_N 147 KLPVGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCEV 226 (917)
T ss_dssp CCCEEEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHCTTEEE
T ss_pred cccEEEEEccccccCcCCceEEEecccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccCCCcEE
Confidence 23677777777431 1 1 2367777777663 1 137999999999999885 6778999
Q ss_pred EEEEcccceeeeeccCCc-----------eEeeCCCCCCcCCCCc------hHHHHHHHHHHHHHHHcCCC---------
Q 017527 150 VLIAGTGTIAYGFTEDGR-----------DARAAGAGPILGDWGS------GYGIAAQALTAVIRAYDGRG--------- 203 (370)
Q Consensus 150 ~l~~GTGi~g~gii~dG~-----------l~~aGg~G~llgd~Gs------~~~iG~~~~~~~~~~~dg~~--------- 203 (370)
++|+|||++| +++.+|+ ...++||||+- +.+. .+.. .+.+..+..
T Consensus 227 glilGTGvng-g~i~~g~~i~~~~G~~g~~~in~E~G~f~-~~~~l~~~~t~~D~-------~~dc~~g~pg~g~~Ek~~ 297 (917)
T 1cza_N 227 GLIIGTGTNA-CYMEELRHIDLVEGDEGRMCINTEWGAFG-DDGSLEDIRTEFDR-------AIDAYSLNPGKQLFEKMV 297 (917)
T ss_dssp EEEESSSEEE-EEEEEGGGCTTSSCCSSEEEEECCGGGTT-TTTTTTTTCCHHHH-------HHHHTSSSTTSSTTHHHH
T ss_pred EEEEECCcce-EEEecCcccccccCCCCceEEeccccccC-CccccccCCCcccc-------ccccCCcCCCccHhHHHh
Confidence 9999999955 6888887 34578888862 1110 0000 000111110
Q ss_pred CCchhHH---HHHHHc-------------------CCCChhhHHHHhccCCChHHHhhhHHHHHHHH----hcCC-----
Q 017527 204 PDTMLTS---NILSTL-------------------ELSSPDELIGWTYVDPSWARIAALVPVVVSCA----EAGD----- 252 (370)
Q Consensus 204 ~~~~l~~---~~~~~~-------------------~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A----~~GD----- 252 (370)
+...+.+ .++..+ .+ +...+ .... +. ...+ ..+..|++.+ ..||
T Consensus 298 SG~yLgel~r~~l~~~~~~~~~~~~~~~~~l~~~~~l-~t~~v-s~~~-~~-~~~~-~~~~~i~~~~~~~~~~~D~~~~~ 372 (917)
T 1cza_N 298 SGMYLGELVRLILVKMAKEGLLFEGRITPELLTRGKF-NTSDV-SAIE-KN-KEGL-HNAKEILTRLGVEPSDDDCVSVQ 372 (917)
T ss_dssp SHHHHHHHHHHHHHHHHHTTSSGGGCCCTTTTSTTSS-CHHHH-HHHT-CT-TTHH-HHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhccccccccccchhhcccccc-ChHHH-HHHh-cc-cccH-HHHHHHHHHhCCCCCHHHHHHHH
Confidence 0011111 111000 00 00011 0011 00 0011 1234567666 4556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRL--SLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIW 330 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l--~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~ 330 (370)
+.|..+++++++++|.+|+++++.+ ||.. ...++.|++||||++.++.| .+.+++.+++..|. ...
T Consensus 373 ~~a~~v~~raa~llA~gia~ii~~l~~dp~~--~~~~~~IvigGgV~~~~~~~--~~~l~~~l~~~~~~--------~~~ 440 (917)
T 1cza_N 373 HVCTIVSFRSANLVAATLGAILNRLRDNKGT--PRLRTTVGVDGSLYKTHPQY--SRRFHKTLRRLVPD--------SDV 440 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--SSEEEEEEEECHHHHHCSSH--HHHHHHHHHHHCTT--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc--cCcceEEEECCchhhccHHH--HHHHHHHHHHhcCC--------Cce
Confidence 9999999999999999999999999 7200 00118999999999999887 99999999997643 234
Q ss_pred cccccccccccccccceeE
Q 017527 331 PHWHSCDQASANCCGAALC 349 (370)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~ 349 (370)
.+..++++ +..|||.++
T Consensus 441 ~i~~a~dg--s~~GAA~la 457 (917)
T 1cza_N 441 RFLLSESG--SGKGAAMVT 457 (917)
T ss_dssp EEEECTTC--HHHHHHHHH
T ss_pred EEEEeccc--hHHHHHHHH
Confidence 55555444 488988766
|
| >1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=204.65 Aligned_cols=300 Identities=15% Similarity=0.122 Sum_probs=185.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCC-CC--eE----EEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDP-LP--VL----ARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~-g~--il----~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
.+.+|+||+|||++|++++++ + |+ ++ .+...|. +....+.+++++.|.++|.+++++.+....
T Consensus 525 ~G~~lalDlGGTn~Rv~~V~l---------~~g~~~~~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~~l~~~~~~~~ 594 (917)
T 1cza_N 525 NGDFLALDLGGTNFRVLLVKI---------RSGKKRTVEMHNKIYAIPI-EIMQGTGEELFDHIVSCISDFLDYMGIKGP 594 (917)
T ss_dssp CEEEEEEEESSSSEEEEEEEE---------ECSTTCEEEEEEEEECCCH-HHHTSBHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred ceEEEEEEECCCcEEEEEEEe---------CCCcceeEEeeeeEEecCc-ccccCCHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 568999999999999999998 3 43 54 3333332 212235789999999999999998776544
Q ss_pred CcceEEEeecCCCCh---------hh----------HHHHHHHHHhhC----CC-CceEEEeChHHHHHHhhc-CCCCCe
Q 017527 94 AVRAVCLAVSGVNHP---------TD----------QQRILNWLRDIF----PG-NVRLYVHNDALAALASGT-MGKLHG 148 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~---------~~----------~~~l~~~L~~~f----~~-~~pV~V~NDa~aa~~g~~-~g~~~~ 148 (370)
.+ .+|++.|++.+. .| +.++.+.|++.+ +. ..||.|.||+++.++++. .+.++.
T Consensus 595 ~l-~lG~tfsfPv~q~~i~~~~L~~WtKgf~~~~~~g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~~~~~ 673 (917)
T 1cza_N 595 RM-PLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCE 673 (917)
T ss_dssp CC-EEEEEECSCEEEEETTEEEECCCCTTCCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTCTTEE
T ss_pred ce-eEEEEeeccccccccCccEECceecccccCCcCCCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCCCCcE
Confidence 44 899999999652 23 235666666655 31 128999999999999874 667788
Q ss_pred EEEEEcccceeeeeccCCceEe--eCCCCCCcCCCC-chHHHHHHHH-----HHHHHH------------HcCCCCCchh
Q 017527 149 CVLIAGTGTIAYGFTEDGRDAR--AAGAGPILGDWG-SGYGIAAQAL-----TAVIRA------------YDGRGPDTML 208 (370)
Q Consensus 149 v~l~~GTGi~g~gii~dG~l~~--aGg~G~llgd~G-s~~~iG~~~~-----~~~~~~------------~dg~~~~~~l 208 (370)
+.+|+|||+++ +++.+++... .|++||+..+.. ++ +|...+ +..-.. ++...+...|
T Consensus 674 iglIlGTG~na-~y~e~~~~i~~~~g~~g~m~In~EwG~--fg~~~~l~~~~T~~D~~~d~~s~~pG~q~~Ek~~SG~yL 750 (917)
T 1cza_N 674 VGLIVGTGSNA-CYMEEMKNVEMVEGDQGQMCINMEWGA--FGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYL 750 (917)
T ss_dssp EEEEESSSEEE-EEEEETTTCTTSSCCSSEEEEECCGGG--TTTTSTTTTTCCHHHHHHHHTSTTTTSCTTGGGTSTTTH
T ss_pred EEEEEeCCeeE-EEEEcCccccCcCCCcCcEEEeccccc--CCCcccccCCCCchhhhhhhcCCCCCCCchHHhhhHhHH
Confidence 99999999965 6778876421 245555433211 11 111000 000000 1111111222
Q ss_pred HH---HHHHHcCCCC-------hh----------hHHHHhccCCChHHHhhhHHHHHHHHh----cCC-----HHHHHHH
Q 017527 209 TS---NILSTLELSS-------PD----------ELIGWTYVDPSWARIAALVPVVVSCAE----AGD-----EVANKIL 259 (370)
Q Consensus 209 ~~---~~~~~~~~~s-------~~----------~l~~~~~~~~~~~~~a~~~~~v~~~A~----~GD-----~~A~~il 259 (370)
.+ .++..+.... ++ ..+.....+.. .. .....+++.+. .+| +.|..+.
T Consensus 751 gel~R~il~~~~~~~~lf~~~~~~~l~~~~~~~t~~ls~ie~d~~--~~-~~~~~i~~~~~~~~~~~D~~~~~~ia~~v~ 827 (917)
T 1cza_N 751 GEIVRNILIDFTKKGFLFRGQISETLKTRGIFETKFLSQIESDRL--AL-LQVRAILQQLGLNSTCDDSILVKTVCGVVS 827 (917)
T ss_dssp HHHHHHHHHHHHHTTSSGGGCCCTTTTSTTCSCHHHHHHHTCSSC--CH-HHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccccccchhhccCCccchHHhhhhhcCcc--hh-hHHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 11 1111110000 00 01111111110 00 01234777665 678 8999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc
Q 017527 260 QDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA 339 (370)
Q Consensus 260 ~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~ 339 (370)
+|+++++|.+|+++++.+++....+..+..|+++||+++.++.| .+.+++.+++..|..+ +.+..++++.
T Consensus 828 ~RaA~l~a~~iaai~~~~~~~~~~~~~~~~V~vdGsv~~~~p~f--~~~~~~~l~~l~~~~~--------v~~~~~~dgs 897 (917)
T 1cza_N 828 RRAAQLCGAGMAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHF--SRIMHQTVKELSPKCN--------VSFLLSEDGS 897 (917)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTTH--HHHHHHHHHHHSTTEE--------EEEEECSSCS
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCccceEEEECCHHHHcCcHH--HHHHHHHHHHhCCCCc--------eEEEEecCCh
Confidence 99999999999999999984111111126899999999999988 9999999999765432 3455555555
Q ss_pred ccccccceeE
Q 017527 340 SANCCGAALC 349 (370)
Q Consensus 340 ~~~~~~~~~~ 349 (370)
..|||-++
T Consensus 898 --g~GAAl~a 905 (917)
T 1cza_N 898 --GKGAALIT 905 (917)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 78887665
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-16 Score=155.67 Aligned_cols=292 Identities=11% Similarity=0.051 Sum_probs=173.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC-----eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-cC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP-----VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~-----il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~ 94 (370)
.+.+|++|+|||++|++++++ +|+ +..+...|. +....+.+++++.|.+.|.+++++..... .+
T Consensus 79 ~G~~LalDlGGTn~Rv~~V~l---------~g~~~~~~~~~~~~Ip~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~ 148 (485)
T 3o8m_A 79 TGDFLALDLGGTNLRVVLVKL---------GGNHDFDTTQNKYRLPD-HLRTGTSEQLWSFIAKCLKEFVDEWYPDGVSE 148 (485)
T ss_dssp EEEEEEEEESSSEEEEEEEEE---------ESSSCEEEEEEEEECCT-TGGGSBHHHHHHHHHHHHHHHHHHHCTTCCSS
T ss_pred ceEEEEEEecCCeEEEEEEEE---------CCCCceEEEEEEEecCc-hhccCCHHHHHHHHHHHHHHHHHHhccccccc
Confidence 468999999999999999998 565 433444433 23222478999999999999999876432 45
Q ss_pred cceEEEeecCCCChh---------h----------HHHHHHHHHhhC---CCCce---EEEeChHHHHHHhhc-CCCCCe
Q 017527 95 VRAVCLAVSGVNHPT---------D----------QQRILNWLRDIF---PGNVR---LYVHNDALAALASGT-MGKLHG 148 (370)
Q Consensus 95 v~~IgIgvpG~~~~~---------~----------~~~l~~~L~~~f---~~~~p---V~V~NDa~aa~~g~~-~g~~~~ 148 (370)
...+|++.|++.+.. | +.++.+.|++.+ + .| +.|.||++++++++. .+.++.
T Consensus 149 ~l~lGftfSfP~~q~~i~~g~li~wtKGF~i~~~~G~dv~~~L~~al~r~g--l~v~v~aivNDtv~tll~~~y~~~~~~ 226 (485)
T 3o8m_A 149 PLPLGFTFSYPASQKKINSGVLQRWTKGFDIEGVEGHDVVPMLQEQIEKLN--IPINVVALINDTTGTLVASLYTDPQTK 226 (485)
T ss_dssp CEEEEEEECSCEECSBTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTT--CCEEEEEEECHHHHHHHHHHHHCTTEE
T ss_pred ccceEEEEeeeEEEcccCCEEEeeccccccCCCcCCccHHHHHHHHHHhcC--CCceEEEEEEcHHHHHHHHhhCCCCcE
Confidence 678999999984311 2 235666666665 5 45 679999999999874 566778
Q ss_pred EEEEEcccceeeeeccC------------------CceEeeCCCCCCcCCCC-----chHHHHHHHHHHHHHHHcCCCC-
Q 017527 149 CVLIAGTGTIAYGFTED------------------GRDARAAGAGPILGDWG-----SGYGIAAQALTAVIRAYDGRGP- 204 (370)
Q Consensus 149 v~l~~GTGi~g~gii~d------------------G~l~~aGg~G~llgd~G-----s~~~iG~~~~~~~~~~~dg~~~- 204 (370)
+.+|+|||++++ ++.+ ++..-.=|||.+ ++.. .-|..- +.. ....++.
T Consensus 227 iglIlGTG~N~~-y~e~~~~i~k~~~~~~~~~~~~~~miINtEwG~F-~~~~~~lp~T~~D~~---lD~---~S~nPG~Q 298 (485)
T 3o8m_A 227 MGIIIGTGVNGA-YYDVVSGIEKLEGLLPEDIGPDSPMAINCEYGSF-DNEHLVLPRTKYDVI---IDE---ESPRPGQQ 298 (485)
T ss_dssp EEEEESSSEEEE-EEEEGGGCGGGTTTCCTTSCTTCEEEEECCGGGT-TTTCSSSCCCHHHHH---HHH---HSSSTTSC
T ss_pred EEEEEecCcceE-EEeeccccccccccccccCCCCCcEEEEcccccC-CCCcccCCCCchhhH---Hhh---cCCCCCce
Confidence 899999999775 5432 123334677765 3210 111110 000 0000000
Q ss_pred -------C---chhHHHHHHH-------------------cCCCChhhHHHHhccCCChHHHhhhHHHHHHH--------
Q 017527 205 -------D---TMLTSNILST-------------------LELSSPDELIGWTYVDPSWARIAALVPVVVSC-------- 247 (370)
Q Consensus 205 -------~---~~l~~~~~~~-------------------~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~-------- 247 (370)
. ..+.+.++-. |.+.+ .++.....++.. .+. .+..+++.
T Consensus 299 ~fEKmiSG~YLGEivRlil~~l~~~~~lF~~~~~~~L~~~~~l~T--~~ls~i~~d~~~-~l~-~~~~~l~~~l~~~~t~ 374 (485)
T 3o8m_A 299 AFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQDISKLKEAYVMDT--SYPSKIEDDPFE-NLE-DTDDLFKTNLNIETTV 374 (485)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTTSSSTTSCCGGGGSTTCSCT--HHHHHHHHCCCT-TCH-HHHHHHHHHHCCCCCH
T ss_pred eeccccccchHHHHHHHHHHHHHHcCcccCCCCcHHhcCCCCcCc--HHHHHHHcCCcc-hHH-HHHHHHHHHhCCCCCH
Confidence 0 0111211111 11111 111111111100 000 01111111
Q ss_pred --HhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEE--EcCcccCcccccchHHHHHHHHhhCCCceee
Q 017527 248 --AEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVM--VGGVLEANRRWDIGREVVKCILRDYPGAVPI 323 (370)
Q Consensus 248 --A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVl--gGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~ 323 (370)
+..=-..|..+.+|+++.+|.+++++++..+ |+.+++ .||+.+.++.| .+.+++.+++..+....
T Consensus 375 ~d~~~vr~i~~~V~~RAA~L~Aa~iaail~~~~--------~~~~~VgvdGSv~~~~P~f--~~~~~~~l~~ll~~~~~- 443 (485)
T 3o8m_A 375 VERKLIRKLAELVGTRAARLTVCGVSAICDKRG--------YKTAHIAADGSVFNRYPGY--KEKAAQALKDIYNWDVE- 443 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------CSSEEEEEESHHHHHSTTH--HHHHHHHHHHHHTCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCceEEEEecChhccCccH--HHHHHHHHHHHhccccc-
Confidence 0000145778899999999999999999999 466555 69999999998 99999999997653210
Q ss_pred CCCCCcccccccccccccccccceeE
Q 017527 324 RPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 324 ~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.|.-..+.+..++++. ..|||-++
T Consensus 444 ~~~~~~v~l~~a~DGS--g~GAAliA 467 (485)
T 3o8m_A 444 KMEDHPIQLVAAEDGS--GVGAAIIA 467 (485)
T ss_dssp SGGGCSEEEEECCCTT--THHHHHHH
T ss_pred cCCCceEEEEEcCCCh--HHHHHHHH
Confidence 0112345555666666 88887554
|
| >3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.9e-11 Score=119.64 Aligned_cols=295 Identities=17% Similarity=0.115 Sum_probs=164.7
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEE-EEecCC-CccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR-AAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~-~~~~~~-n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
.+.+|++|+|||++|+.++++ .|.+... .....+ .....+.+++++.|.+.|.+++++.+... +..-+
T Consensus 58 ~G~~LAlDlGGTn~RV~~V~l---------~g~~~~~~~~~~ip~~~~~g~~~~LFd~Ia~~i~~fl~~~~~~~-~~lpl 127 (445)
T 3hm8_A 58 RGDFLALDLGGTNFRVLLVRV---------TTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSG-QSLPL 127 (445)
T ss_dssp CEEEEEEEESSSSEEEEEEEE---------SSSEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCTT-CCCCE
T ss_pred eeEEEEEEecCCeEEEEEEEE---------CCceEEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHHhCccc-ccCcc
Confidence 468999999999999999998 5553321 122222 12222468899999999999998876542 33345
Q ss_pred EEeecCCCCh---------hh----------H----HHHHHHHHhhCCC-CceEEEeChHHHHHHhhc-CCCCCeEEEEE
Q 017527 99 CLAVSGVNHP---------TD----------Q----QRILNWLRDIFPG-NVRLYVHNDALAALASGT-MGKLHGCVLIA 153 (370)
Q Consensus 99 gIgvpG~~~~---------~~----------~----~~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~~-~g~~~~v~l~~ 153 (370)
|+..+-|... .| + ..|++.++++-.. ...+.|.||+++.++++. .+.+..+.+|+
T Consensus 128 GftFSFP~~Q~sl~~g~Li~wtKGF~~~~~~G~dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~~~~~iglIl 207 (445)
T 3hm8_A 128 GFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIV 207 (445)
T ss_dssp EEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTCTTEEEEEEE
T ss_pred eEEEeeeeEeccCCceEEEEeeccccCCCCCCCcHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCCCCceEEEEE
Confidence 5555554211 01 1 2355555544221 124889999999998864 45567789999
Q ss_pred cccceeeeecc-----------CCceEeeCCCCCCcCCCC-----------------------------chHHHH---HH
Q 017527 154 GTGTIAYGFTE-----------DGRDARAAGAGPILGDWG-----------------------------SGYGIA---AQ 190 (370)
Q Consensus 154 GTGi~g~gii~-----------dG~l~~aGg~G~llgd~G-----------------------------s~~~iG---~~ 190 (370)
|||++++ ++. .++..-.=|||.+ ++.+ ||.++| +.
T Consensus 208 GTGtNa~-y~e~~~~i~k~~~~~~~miINtEwG~F-g~~~~l~~~~T~~D~~lD~~S~~PG~q~fEKmiSG~YLGEivRl 285 (445)
T 3hm8_A 208 GTGTNAC-YMEELRNVAGVPGDSGRMCINMEWGAF-GDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRH 285 (445)
T ss_dssp SSSEEEE-EEEEGGGCTTSCCCSSEEEEECCGGGT-TTTTTTTTTCCHHHHHHHHTSSSTTSSTTGGGTSHHHHHHHHHH
T ss_pred eCCceEE-EEEecccccccCCCCCcEEEEcchhhc-CCCCCCcCCCCccchHHhcCCCCCCceEeeeecchhhHHHHHHH
Confidence 9999876 442 1334444677754 3322 222222 22
Q ss_pred HHHHHHHH---HcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHh---------cCCHHHHHH
Q 017527 191 ALTAVIRA---YDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAE---------AGDEVANKI 258 (370)
Q Consensus 191 ~~~~~~~~---~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~---------~GD~~A~~i 258 (370)
.+...... ..+..+. . +.+.+.+.+ .++.....+... .. .+..+++... .=-..|..+
T Consensus 286 iL~~l~~~~~lf~~~~~~-~----L~~~~~l~T--~~ls~ie~D~~~--~~-~~~~~l~~l~~~~t~~d~~~vr~i~~~V 355 (445)
T 3hm8_A 286 ILLHLTSLGVLFRGQQIQ-R----LQTRDIFKT--KFLSEIESDSLA--LR-QVRAILEDLGLPLTSDDALMVLEVCQAV 355 (445)
T ss_dssp HHHHHHHHTSSGGGCCCG-G----GGSTTCSCH--HHHHHHTCTTCC--HH-HHHHHHHTTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCcH-H----HcCCCCCCc--HHHHHHhcCCch--HH-HHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 22111110 0000000 0 000010000 111111111100 00 0111211100 001456678
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccc
Q 017527 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQ 338 (370)
Q Consensus 259 l~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~ 338 (370)
.+|+++..|-+|+++++..+.....+..+-.|-+-|++.+.++.| .+.+++.+.+..|.. .+.+..++++
T Consensus 356 ~~RaA~L~Aa~iaai~~k~~~~~~~~~~~~~VgvDGsvy~~~P~f--~~~l~~~l~~l~~~~--------~v~~~~s~DG 425 (445)
T 3hm8_A 356 SQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRF--SSLVAATVRELAPRC--------VVTFLQSEDG 425 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTTH--HHHHHHHHHHHCTTE--------EEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccCcEEEEeceehccChhH--HHHHHHHHHHhCCCC--------cEEEEECCCC
Confidence 999999999999999998852111111245888999999999998 999999999987753 3666666666
Q ss_pred cccccccceeE
Q 017527 339 ASANCCGAALC 349 (370)
Q Consensus 339 ~~~~~~~~~~~ 349 (370)
- -.|||-++
T Consensus 426 S--g~GAAl~A 434 (445)
T 3hm8_A 426 S--GKGAALVT 434 (445)
T ss_dssp H--HHHHHHHH
T ss_pred c--hHHHHHHH
Confidence 5 56665443
|
| >3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=6.2e-11 Score=119.05 Aligned_cols=295 Identities=14% Similarity=0.120 Sum_probs=168.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC-----eEE--EEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP-----VLA--RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNR 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~-----il~--~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~ 92 (370)
.+.+|++|+|||+.|+.++.+ .|+ ... +...+ +......+.+++++-|.+.|.+++++.+..
T Consensus 76 ~G~fLAlDlGGTNfRV~~V~L---------~g~~~~~~~~~~~~~~~~Ip~~l~~gt~~eLFd~IA~~i~~fl~~~~~~- 145 (470)
T 3f9m_A 76 VGDFLSLDLGGTNFRVMLVKV---------GEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMK- 145 (470)
T ss_dssp CEEEEEEEESSSEEEEEEEEE---------EC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCS-
T ss_pred ceEEEEEEecCceEEEEEEEE---------CCCCCCcceEEEEEEeecCChHhccCCHHHHHHHHHHHHHHHHhhcccc-
Confidence 458999999999999999988 332 111 11222 221122357899999999999999987654
Q ss_pred cCcceEEEeecCCCChh---------h--------------HHHHHHHHHhh--CCCCceEEEeChHHHHHHhhcC-CCC
Q 017527 93 SAVRAVCLAVSGVNHPT---------D--------------QQRILNWLRDI--FPGNVRLYVHNDALAALASGTM-GKL 146 (370)
Q Consensus 93 ~~v~~IgIgvpG~~~~~---------~--------------~~~l~~~L~~~--f~~~~pV~V~NDa~aa~~g~~~-g~~ 146 (370)
.+..-+|+..+=|.... | ...|++.|+++ ++ -..+.|.||+.+.++++.+ ..+
T Consensus 146 ~~~lpLGfTFSFP~~Q~sl~~g~Li~WTKGF~~~~v~G~DVv~lL~~al~r~g~~~-v~v~AlvNDTVgTL~s~aY~~~~ 224 (470)
T 3f9m_A 146 HKKLPLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFE-MDVVAMVNDTVATMISCYYEDHQ 224 (470)
T ss_dssp SSCCEEEEEECSCEEEEETTEEEECCCCTTCCCBTCBTSBHHHHHHHHHHHHCSCC-CEEEEEECHHHHHHHHHHTTCTT
T ss_pred ccccceEEEEeccccccCCCceEEEeccccccCCCcCCccHHHHHHHHHHhcCCCC-CcEEEEEEcCHHHHHhcccCCCC
Confidence 34455777777664310 1 23566777766 33 1357799999999888754 445
Q ss_pred CeEEEEEcccceeeeecc----------CCceEeeCCCCCCcCCCC-----------------------------chHHH
Q 017527 147 HGCVLIAGTGTIAYGFTE----------DGRDARAAGAGPILGDWG-----------------------------SGYGI 187 (370)
Q Consensus 147 ~~v~l~~GTGi~g~gii~----------dG~l~~aGg~G~llgd~G-----------------------------s~~~i 187 (370)
.-+.+|+|||++++-+-. .++.+-.=|||.+ ++.+ ||.++
T Consensus 225 ~~iGlI~GTGtNa~Y~E~~~~I~k~~~~~~~miINtEwG~F-g~~~~l~~~~T~~D~~lD~~S~nPG~Q~fEKmiSG~YL 303 (470)
T 3f9m_A 225 CEVGMIVGTGCNACYMEEMQNVELVEGDEGRMCVNTEWGAF-GDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYM 303 (470)
T ss_dssp EEEEEEESSSEEEEEEEEGGGCTTSSCCSSEEEEECCGGGT-TTTSTTGGGCCHHHHHHHHHSSSTTSCHHHHTTCHHHH
T ss_pred ceEEEEEecCCceEEeeeccccccccCCCCcEEEeechhhc-CCCcccCCCCCcccHHHhhcCCCCCceeeccccchhhH
Confidence 667899999999874431 2334445677764 4332 12221
Q ss_pred H---HHHHHHHHHH---HcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHH---------hcCC
Q 017527 188 A---AQALTAVIRA---YDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCA---------EAGD 252 (370)
Q Consensus 188 G---~~~~~~~~~~---~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A---------~~GD 252 (370)
| +..+...... ..+..+. . +.+.+.+.+ .++.....+.... ..+..+++.. ..=-
T Consensus 304 GEivRliL~~l~~~~~lf~~~~~~-~----L~~~~~l~T--~~ls~ie~d~~~~---~~~~~il~~l~~~~~~~d~~~vr 373 (470)
T 3f9m_A 304 GELVRLVLLRLVDENLLFHGEASE-Q----LRTRGAFET--RFVSQVESDTGDR---KQIYNILSTLGLRPSTTDCDIVR 373 (470)
T ss_dssp HHHHHHHHHHHHHTTCSGGGCCCT-T----TTSTTCSCH--HHHHHHHTCCSSC---HHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcCCCCcH-H----hcCCCCcCc--hHHhhhccCCCch---HHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 2221111100 0000000 0 000011100 1111111111000 0111222110 0001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..|-+|+++++..+-....+..+-.|-+-|++.+.++.| .+.+++.+++..|..+ +.+
T Consensus 374 ~i~~~V~~RaA~L~Aa~iaail~k~~~~~~~~~~~~~VgvDGsv~~~yp~f--~~~~~~~l~~l~~~~~--------v~l 443 (470)
T 3f9m_A 374 RACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSF--KERFHASVRRLTPSCE--------ITF 443 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSEEEEEEEECHHHHHCTTH--HHHHHHHHHHHCTTEE--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeccHHHhCchH--HHHHHHHHHHHcCCCe--------EEE
Confidence 456778999999999999999998863111112235788999999999998 9999999999775433 555
Q ss_pred cccccccccccccceeE
Q 017527 333 WHSCDQASANCCGAALC 349 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (370)
..++++. ..|||-++
T Consensus 444 ~~a~DGS--g~GAAliA 458 (470)
T 3f9m_A 444 IESEEGS--GRGAALVS 458 (470)
T ss_dssp EECSSHH--HHHHHHHH
T ss_pred EEcCCCc--HHHHHHHH
Confidence 5555555 67776544
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.3e-06 Score=81.75 Aligned_cols=225 Identities=14% Similarity=0.140 Sum_probs=118.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++||||+|+|+++++++|. +|+++.+...++... .. +.+.++++++.+ .+.+..++.++ +
T Consensus 3 ~~~lGiD~Gst~~k~~l~d~---------~g~i~~~~~~~~~~~---~~----~~~~~~l~~l~~-~~~~~~~i~~i--~ 63 (270)
T 1hux_A 3 IYTLGIDVGSTASKCIILKD---------GKEIVAKSLVAVGTG---TS----GPARSISEVLEN-AHMKKEDMAFT--L 63 (270)
T ss_dssp CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECCSS---CC----HHHHHHHHHHHH-HTCCGGGCSEE--E
T ss_pred cEEEEEEeccceEEEEEEeC---------CCCEEEEEEecCCCC---HH----HHHHHHHHHHHH-cCCChhHEEEE--E
Confidence 38999999999999999998 799999876655321 12 233344555543 34444566654 4
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh-cCCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCcCC
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-~~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd 180 (370)
++|.... .+.. +. .|+ .|+..|.+.+. +...+..+++-+|.+-.-.-.+.+|++... ...|
T Consensus 64 ~TG~g~~--------~~~~-~~--~~~--v~Ei~ah~~ga~~~~~~~~~vidiGGqd~k~i~~~~g~v~~~-----~mn~ 125 (270)
T 1hux_A 64 ATGYGRN--------SLEG-IA--DKQ--MSELSCHAMGASFIWPNVHTVIDIGGQDVKVIHVENGTMTNF-----QMND 125 (270)
T ss_dssp EESTTTT--------TTTT-TC--SEE--ECHHHHHHHHHHHHCTTCCEEEEEETTEEEEEEEETTEEEEE-----EEES
T ss_pred EeCcccc--------chhh-cC--CCC--cccHHHHHHHHHHhCCCCCEEEEECCCceEEEEEeCCceeee-----cccc
Confidence 5666321 1122 44 455 78888776554 222233356777766534444467765310 0122
Q ss_pred CCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhcc--CC--ChHHHhhhH-HHHHHHHhcCCHHH
Q 017527 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV--DP--SWARIAALV-PVVVSCAEAGDEVA 255 (370)
Q Consensus 181 ~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~--~~--~~~~~a~~~-~~v~~~A~~GD~~A 255 (370)
..++ ..|. +.+.+...+++ +.+++-+.... .+ ...+-..++ .+++....+|.+.
T Consensus 126 ~ca~-GtG~------------------~le~~a~~lg~-~~~el~~la~~~~~p~~~~~~c~vfa~s~v~~l~~~g~~~- 184 (270)
T 1hux_A 126 KCAA-GTGR------------------FLDVMANILEV-KVSDLAELGAKSTKRVAISSTCTVFAESEVISQLSKGTDK- 184 (270)
T ss_dssp SCCT-TSHH------------------HHHHHHHHHTC-CTTTHHHHHTTCCSCCCCCCCSHHHHHHHHHHHHHTTCCH-
T ss_pred ccch-hhHH------------------HHHHHHHHhCC-CHHHHHHHHhhCCCCCCcccccchhHhHHHHHHhhCCCCH-
Confidence 2111 0011 11111222221 11222111110 00 000000112 3456666677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHH
Q 017527 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (370)
Q Consensus 256 ~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~ 314 (370)
..|+....+.++..+..++...++ ++.|++.||++. ++.| .+.+.+.+.
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~-------~~~i~~~GG~a~-n~~~--~~~~~~~lg 233 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI-------VKDVVMTGGVAQ-NYGV--RGALEEGLG 233 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-------CSSEEEESGGGG-CHHH--HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-------CCeEEEeCcccc-CHHH--HHHHHHHHC
Confidence 577777777888877777766653 578999999875 4555 566655553
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.1e-05 Score=75.17 Aligned_cols=113 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
|+||||+|+|+++++++|. +++++........ ..++.+ .+++++++++++.....+..++.
T Consensus 2 ~~lGID~GsT~tk~av~d~---------~~~il~~~~~~~g----~~~e~a----~~vl~~~~~~a~~~~~~~~~~a~-- 62 (276)
T 4ehu_A 2 YTMGLDIGSTASKGVILKN---------GEDIVASETISSG----TGTTGP----SRVLEKLYGKTGLAREDIKKVVV-- 62 (276)
T ss_dssp EEEEEEECSSCEEEEEEET---------TTEEEEEEEESCC----TTSSHH----HHHHHHHHHHHCCCGGGEEEEEE--
T ss_pred eEEEEEcCccEEEEEEEEC---------CCeEEEEEEecCC----CCHHHH----HHHHHHHHHHCCCcchhcccccc--
Confidence 8999999999999999998 7888887765432 123332 33567777788877666665543
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CCCCCeEEEEEcccceeeeeccCCce
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
.|... ..+. .|....|...|.+++.. ....+.++...|.|.-..-+..+|..
T Consensus 63 t~~~~------------~a~~--~~~~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~~~g~~ 116 (276)
T 4ehu_A 63 TGYGR------------MNYS--DADKQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLDNNGRL 116 (276)
T ss_dssp ESTTG------------GGCC--SCSEECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEECTTSCE
T ss_pred CchHH------------HHhh--CCCcccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEEecCce
Confidence 33221 1233 57788899998777643 33345555554444323323356654
|
| >4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.6e-05 Score=74.51 Aligned_cols=249 Identities=18% Similarity=0.157 Sum_probs=137.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCc--cCcceE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDAARETIEKVMADALLKSGSNR--SAVRAV 98 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-~~~~~~~~~~~~l~~~i~~~l~~~~~~~--~~v~~I 98 (370)
..+|.|.-|.|++|+.+++.. +.+++.+.....-. ....+-.+.++.|.+. +.+.+... +++.+|
T Consensus 23 ~~ILviN~GSSS~K~~l~~~~--------~~~~l~~g~~e~ig~~~~~dh~~a~~~il~~----L~~~~~~~~~~~i~aV 90 (398)
T 4ijn_A 23 VTVLVVNSGSSSLKYAVVRPA--------SGEFLADGIIEEIGSGAVPDHDAALRAAFDE----LAAAGLHLEDLDLKAV 90 (398)
T ss_dssp CEEEEEEECSSCEEEEEECTT--------TCCEEEEEEECSTTBTTBCSHHHHHHHHHHH----HHHTTCCGGGSCEEEE
T ss_pred ccEEEEeCCchhheEEEEECC--------CCceeeeeeeeecCCCCccCHHHHHHHHHHH----HHHcCCCccccceeEE
Confidence 469999999999999999872 34466665433210 0011334455544443 33455433 578888
Q ss_pred EE-eecCC--------CChhhH---------------HHH--HHHHHhhCCCCce-EEEeChHH-------HHHHh----
Q 017527 99 CL-AVSGV--------NHPTDQ---------------QRI--LNWLRDIFPGNVR-LYVHNDAL-------AALAS---- 140 (370)
Q Consensus 99 gI-gvpG~--------~~~~~~---------------~~l--~~~L~~~f~~~~p-V~V~NDa~-------aa~~g---- 140 (370)
|. =|+|= +++.-- .+| ....++.||+ +| |.|-.-+. +...+
T Consensus 91 GhRvVhGG~~f~~~~~I~~~vl~~l~~~~~lAPLHnp~nL~gI~a~~~~~P~-~p~vavfDTafh~tmp~~A~~y~lP~~ 169 (398)
T 4ijn_A 91 GHRMVHGGKTFYKPSVVDDELIAKARELSPLAPLHNPPAIKGIEVARKLLPD-LPHIAVFDTAFFHDLPAPASTYAIDRE 169 (398)
T ss_dssp EEEESCCTTTCCSCEECCHHHHHHHHHTGGGSTTTHHHHHHHHHHHHHHCTT-SCEEEEETTGGGTTCCHHHHCCSSCHH
T ss_pred ecCCCCCCcCCCCCeEeCHHHHHHHHhcCcCCcccCHHHHHHHHHHHHHCCC-CCeEEecCChhhccCcHHHHHcCCCHH
Confidence 75 23442 122110 011 3444566874 77 54433221 11000
Q ss_pred -------------------------hcCCC----CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHH
Q 017527 141 -------------------------GTMGK----LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYG 186 (370)
Q Consensus 141 -------------------------~~~g~----~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~ 186 (370)
+..|. .+.|++.+|+|+.. ..+.+|+... .+--|.+.+...+...
T Consensus 170 ~~~~~giRryGFHGlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv-~Ai~~GksvDtsmG~tpleGl~mgtRsG~iD 248 (398)
T 4ijn_A 170 LAETWHIKRYGFHGTSHEYVSQQAAIFLDRPLESLNQIVLHLGNGASA-SAVAGGKAVDTSMGLTPMEGLVMGTRSGDID 248 (398)
T ss_dssp HHHHTTCCCCCSCHHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEE-EEEETTEEEEESCCSSTTSSSCCSSCCCSCC
T ss_pred HHHhcCceEeCccHHhHHHHHHHHHHHhCCChHHccEEEEEECCCcEE-EEEECCEEEEeCCCCCcccCCCCCCCCCCCC
Confidence 11132 37899999999854 5668999864 1212444332211111
Q ss_pred HHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH--hhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 017527 187 IAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI--AALVPVVVSCAEAGDEVANKILQDSVE 264 (370)
Q Consensus 187 iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~--a~~~~~v~~~A~~GD~~A~~il~~a~~ 264 (370)
.+ ..-.+.+..+ -+.+++...++++.....+ ....++|++++++||+.|+.+++.++.
T Consensus 249 p~-------------------~l~~l~~~~~-~s~~e~~~~Lnk~sGLlg~sG~~D~R~i~~~a~~Gd~~A~la~d~f~y 308 (398)
T 4ijn_A 249 PG-------------------VIMYLWRTAG-MSVDDIESMLNRRSGVLGLGGASDFRKLRELIESGDEHAKLAYDVYIH 308 (398)
T ss_dssp HH-------------------HHHHHHHTSC-CCHHHHHHHHHHSCHHHHHHCCSSHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hH-------------------HHHHHHHhcC-CCHHHHHHHHHhccCcceecCCCCHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11 0111111111 1333333333221100000 024588999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 265 ELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 265 ~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
.+++.|.++...|. +|+.||++||+.+..+.+ .+.+.+.+
T Consensus 309 riak~Iga~aa~LG-------~vDaIVfTGGIgEns~~v--r~~I~~~l 348 (398)
T 4ijn_A 309 RLRKYIGAYMAVLG-------RTDVISFTAGVGENVPPV--RRDALAGL 348 (398)
T ss_dssp HHHHHHHHHHHHHS-------SCCEEEEEHHHHHHCHHH--HHHHHTTC
T ss_pred HHHHHHHHHHHHhC-------CCcEEEECCccccccHHH--HHHHHHHH
Confidence 99999999999994 289999999999754433 44444443
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.8e-07 Score=91.07 Aligned_cols=78 Identities=22% Similarity=0.241 Sum_probs=64.7
Q ss_pred cCCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 18 ~~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
++.+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++++.+.+++++++++.+.+
T Consensus 3 ~~~~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~ 73 (508)
T 3ifr_A 3 LAQGRQVIGLDIGTTSTIAILVRL---------PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGES 73 (508)
T ss_dssp ----CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGG
T ss_pred cccCCEEEEEEecCcceEEEEECC---------CCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCC
Confidence 344569999999999999999998 89999987766532 123579999999999999999888877
Q ss_pred ccCcceEEEeecC
Q 017527 92 RSAVRAVCLAVSG 104 (370)
Q Consensus 92 ~~~v~~IgIgvpG 104 (370)
+.+|.+|||+.+|
T Consensus 74 ~~~I~~Igis~~~ 86 (508)
T 3ifr_A 74 DWRPGGICVTGML 86 (508)
T ss_dssp GCCEEEEEEEECS
T ss_pred hhheEEEEEECCC
Confidence 7899999999999
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=1.1e-06 Score=89.21 Aligned_cols=78 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred cCCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 18 ~~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.+|+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++++.+.+++++++++.+.+
T Consensus 2 ~aM~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~ 72 (501)
T 3g25_A 2 NAMEKYILSIDQGTTSSRAILFNQ---------KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVR 72 (501)
T ss_dssp -CCCCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccccEEEEEEeCccceEEEEEcC---------CCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCC
Confidence 457779999999999999999999 89999887765431 123579999999999999999988888
Q ss_pred ccCcceEEEeecC
Q 017527 92 RSAVRAVCLAVSG 104 (370)
Q Consensus 92 ~~~v~~IgIgvpG 104 (370)
+.+|.+|||+.++
T Consensus 73 ~~~I~~Igis~~~ 85 (501)
T 3g25_A 73 ADQIAGIGITNQR 85 (501)
T ss_dssp GGGEEEEEEEECS
T ss_pred cccEEEEEEECCc
Confidence 8899999999874
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=87.90 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=65.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
|+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++++.+.+++++++++.+.++.
T Consensus 24 M~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~~ 94 (520)
T 4e1j_A 24 MGGYILAIDQGTTSTRAIVFDG---------NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITAN 94 (520)
T ss_dssp CSCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred hhCeEEEEEeCCcceEEEEECC---------CCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4569999999999999999999 89999987665431 12357999999999999999998888888
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+|||+.+|
T Consensus 95 ~I~~Igis~~g 105 (520)
T 4e1j_A 95 DIAAIGITNQR 105 (520)
T ss_dssp GEEEEEEEECS
T ss_pred cEEEEEEeCCc
Confidence 99999999998
|
| >3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-05 Score=73.39 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=86.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|+||+|+|++++++++. ++++.+.+.++. . .+.++.. ..+.++++..+.++++|.+|+|+.
T Consensus 3 MlL~IDIGNT~iK~gl~d~----------~~l~~~~r~~T~-~--~t~de~~----~~l~~ll~~~~~~~~~I~~iiISS 65 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDG----------DEIKLRFRHTSK-V--STSDELG----IFLKSVLRENNCSPETIRKIAICS 65 (266)
T ss_dssp CEEEEEECSSEEEEEEEET----------TEEEEEEEEECS-C--CCHHHHH----HHHHHHHHTTTCCGGGCCEEEEEE
T ss_pred eEEEEEECCCeEEEEEEEC----------CEEEEEEEecCC-C--CCHHHHH----HHHHHHHHHcCCChhhceEEEEec
Confidence 6899999999999999997 688888877765 3 3566644 445556667777777899998888
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEE------------eC------hHHHHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYV------------HN------DALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V------------~N------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
+++ .-...+++.+++.|+. .|++| +| |-.+++++++ ++..+.+++-+||=+---.+
T Consensus 66 Vvp---~~~~~l~~~~~~~~~~-~~~~v~~~~~~g~~~~y~~P~~lG~DR~~~~vaA~~~~~~~~~iVVD~GTA~T~d~v 141 (266)
T 3djc_A 66 VVP---QVDYSLRSACVKYFSI-DPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCAI 141 (266)
T ss_dssp SCH---HHHHHHHHHHHHHTCC-CCEECCSSSCCCCEECCSSGGGSCHHHHHHHHHHHHHSTTSEEEEEEESSEEEEEEE
T ss_pred chH---hHHHHHHHHHHHHcCC-CeEEEcCCCCCCcccCCCChhhhHHHHHHHHHHHHHhcCCCCEEEEECCCeeEEEEE
Confidence 764 3455677777777752 23333 23 4444554432 44357899999998743334
Q ss_pred ccCCceEe
Q 017527 163 TEDGRDAR 170 (370)
Q Consensus 163 i~dG~l~~ 170 (370)
..+|+...
T Consensus 142 ~~~g~~lG 149 (266)
T 3djc_A 142 SHKKAYLG 149 (266)
T ss_dssp CTTSEEEE
T ss_pred cCCCcEEE
Confidence 45566543
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=98.29 E-value=9.5e-06 Score=75.11 Aligned_cols=126 Identities=20% Similarity=0.216 Sum_probs=84.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..+.|.||+|+|++++++++. ++++.+.+.++... .+.++....+.++++. ...++.+|.|
T Consensus 2 ~~M~L~IDIGNT~ik~gl~~~----------~~l~~~~r~~T~~~--~t~de~~~~l~~l~~~-------~~~~i~~i~I 62 (249)
T 3bex_A 2 DPMYLLVDVGNTHSVFSITED----------GKTFRRWRLSTGVF--QTEDELFSHLHPLLGD-------AMREIKGIGV 62 (249)
T ss_dssp CCEEEEEEECSSEEEEEEESS----------SSSCEEEEEECCTT--CCHHHHHHHHHHHHGG-------GGGGEEEEEE
T ss_pred CceEEEEEECCCeEEEEEEEC----------CEEEEEEEecCCCC--CCHHHHHHHHHHHHhh-------ccccCCEEEE
Confidence 347899999999999999986 67887777665432 3567766666555543 2246777777
Q ss_pred eecCCCChhhHHHHHHHHHhhCCC----------CceEEEeC------hHHHHHHhhc--CCCCCeEEEEEcccceeeee
Q 017527 101 AVSGVNHPTDQQRILNWLRDIFPG----------NVRLYVHN------DALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 101 gvpG~~~~~~~~~l~~~L~~~f~~----------~~pV~V~N------Da~aa~~g~~--~g~~~~v~l~~GTGi~g~gi 162 (370)
+.++ |.....+.+.+++.|+. .+++..+| |-.+++++++ ++ .+.+++-+||.+-. -+
T Consensus 63 sSVv---p~~~~~~~~~~~~~~~~~p~~v~~~~~gl~~~y~~P~~lG~DR~~~~~aa~~~~~-~~~iVvD~GTA~T~-d~ 137 (249)
T 3bex_A 63 ASVV---PTQNTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVAFVKEYG-KNGIIIDMGTATTV-DL 137 (249)
T ss_dssp EESC---HHHHHHHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHHHHHHTC-SCEEEEEESSEEEE-EE
T ss_pred EcCc---HHHHHHHHHHHHHhcCCCeEEEEccCCCceeccCChhhcCHHHHHHHHHHHHHcC-CCEEEEEcCCceEE-EE
Confidence 7664 44445566666665531 13444566 6666666653 44 58999999999844 45
Q ss_pred ccCCceEe
Q 017527 163 TEDGRDAR 170 (370)
Q Consensus 163 i~dG~l~~ 170 (370)
+.+|+...
T Consensus 138 v~~g~~lG 145 (249)
T 3bex_A 138 VVNGSYEG 145 (249)
T ss_dssp EETTEEEE
T ss_pred EeCCeEee
Confidence 47887654
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.6e-06 Score=86.45 Aligned_cols=76 Identities=16% Similarity=0.178 Sum_probs=65.0
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH------NSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
|+.|+||||+|+|++|++++|. +|+++.+.+.+.+.. ...+++++++.+.+++++++++.+.++.
T Consensus 1 M~~~~lgiDiGtt~~k~~l~d~---------~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~~ 71 (497)
T 2zf5_O 1 MEKFVLSLDEGTTSARAIIFDR---------ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEPN 71 (497)
T ss_dssp CCCEEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred CCcEEEEEecCCchhEEEEECC---------CCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 3468999999999999999998 899998887765421 1247899999999999999998887778
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+|||+.+|
T Consensus 72 ~i~~Igis~~~ 82 (497)
T 2zf5_O 72 QIAAIGVTNQR 82 (497)
T ss_dssp GEEEEEEEECS
T ss_pred cEEEEEEecCC
Confidence 89999999998
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=98.27 E-value=3.3e-06 Score=85.94 Aligned_cols=75 Identities=16% Similarity=0.266 Sum_probs=64.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++++.+.+++++++++.+.++.+
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDR---------NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEA 74 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CCEEEEEEcCCCceEEEEECC---------CCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 469999999999999999999 89999887665431 123579999999999999999988888889
Q ss_pred cceEEEeecC
Q 017527 95 VRAVCLAVSG 104 (370)
Q Consensus 95 v~~IgIgvpG 104 (370)
|.+|||+.++
T Consensus 75 I~~Igis~~~ 84 (506)
T 3h3n_X 75 IAGIGITNQR 84 (506)
T ss_dssp EEEEEEEECS
T ss_pred eEEEEeeCCc
Confidence 9999999875
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.4e-06 Score=86.84 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=62.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHHHc--CCCc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH------NSVGEDAARETIEKVMADALLKS--GSNR 92 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~~~--~~~~ 92 (370)
+.++||||+|+|++|++++|. +|+++.+.+.+.+.. ...+++++++.+.+++++++++. +.++
T Consensus 3 m~~~lgIDiGtT~~k~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~ 73 (503)
T 2w40_A 3 MNVILSIDQSTQSTKVFFYDE---------ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTS 73 (503)
T ss_dssp CEEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred ccEEEEEEeCCcceEEEEECC---------CCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 468999999999999999998 899999887765421 12479999999999999998876 5656
Q ss_pred cCcceEEEeecC
Q 017527 93 SAVRAVCLAVSG 104 (370)
Q Consensus 93 ~~v~~IgIgvpG 104 (370)
.+|.+|||+.+|
T Consensus 74 ~~i~~Igis~~~ 85 (503)
T 2w40_A 74 VIIKCIGITNQR 85 (503)
T ss_dssp CEEEEEEEEECS
T ss_pred cceEEEEEcCCc
Confidence 789999999996
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.20 E-value=3.7e-06 Score=85.26 Aligned_cols=74 Identities=22% Similarity=0.168 Sum_probs=63.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.|+||||+|+|++|++++|. +|+++.+.+.+.+. ....+++++++.+.+++++++++.+.++.+|
T Consensus 2 ~~~lgiDiGtT~~k~~l~d~---------~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 72 (495)
T 2dpn_A 2 AFLLALDQGTTSSRAILFTL---------EGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEV 72 (495)
T ss_dssp -CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred cEEEEEeeCCcceEEEEECC---------CCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCcccE
Confidence 48999999999999999998 89999887766532 1124799999999999999999888777889
Q ss_pred ceEEEeecC
Q 017527 96 RAVCLAVSG 104 (370)
Q Consensus 96 ~~IgIgvpG 104 (370)
.+|||+.+|
T Consensus 73 ~~Igis~~~ 81 (495)
T 2dpn_A 73 LALGITNQR 81 (495)
T ss_dssp CEEEEEECS
T ss_pred EEEEEeCCC
Confidence 999999996
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00055 Score=63.07 Aligned_cols=134 Identities=18% Similarity=0.062 Sum_probs=86.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
..+++|||+|++++|+++++. +++++.....++... .-.+.+.+.+.+..+++.+....+. .+..
T Consensus 27 ~~~~~gIDiGS~s~k~vi~~~---------~~~~l~~~~~~~~~l~~g~i~d~~~~~~~l~~~~~~~~~~~~~---~~~~ 94 (272)
T 3h1q_A 27 PPYKVGVDLGTADIVLVVTDQ---------EGIPVAGALKWASVVKDGLVVDYIGAIQIVRELKAKVERLLGS---ELFQ 94 (272)
T ss_dssp SCCEEEEECCSSEEEEEEECT---------TCCEEEEEEEECCCCBTTBCTTHHHHHHHHHHHHHHHHHHSSS---CCCE
T ss_pred CCEEEEEEcccceEEEEEECC---------CCcEEEEEeecccccCCCEEEcHHHHHHHHHHHHHHHHHhcCC---ccCe
Confidence 358999999999999999887 678887765443211 1122466667677777666655443 2345
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCceEe
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
+.+++|..........+.. ..+.++. ....+.++..|++.+. +..+.+++=+|.|+--..++.+|++..
T Consensus 95 ~v~tvp~~~~~~~~~~~~~-~~~~~g~-~~~~i~~e~~A~a~~~--~~~~~~viDiGggst~~~~~~~g~~~~ 163 (272)
T 3h1q_A 95 AATAIPPGTVGRNAEACGH-VVAGAGL-ELVTLVDEPVAAARAL--GINDGIVVDIGGGTTGIAVIEKGKITA 163 (272)
T ss_dssp EEEECCSCC---CTTHHHH-HHHHTTC-EEEEEECHHHHHHHHH--TCSSEEEEEECSSCEEEEEEETTEEEE
T ss_pred EEEEcCCCCCHHHHHHHHH-HHHHcCC-eeeecccHHHHHHHHH--cCCCEEEEEECCCcEEEEEEECCEEEE
Confidence 5677877543333333444 4455662 3477899999887643 445678888999986666667787653
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.3e-06 Score=83.74 Aligned_cols=74 Identities=16% Similarity=0.208 Sum_probs=63.9
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH------NSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.|+||||+|+|++|++++|. +|+++.+.+.+.+.. ...+++++++.+.+++++++++.+.++.+|
T Consensus 2 ~~~lgiDiGtts~k~~l~d~---------~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i 72 (504)
T 2d4w_A 2 DYVLAIDQGTTSSRAIVFDH---------SGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTHEDI 72 (504)
T ss_dssp CEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CEEEEEecCCcceEEEEECC---------CCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCcccE
Confidence 48999999999999999998 899998887665431 124799999999999999999888777889
Q ss_pred ceEEEeecC
Q 017527 96 RAVCLAVSG 104 (370)
Q Consensus 96 ~~IgIgvpG 104 (370)
.+|||+.+|
T Consensus 73 ~~Igis~~g 81 (504)
T 2d4w_A 73 AAVGITNQR 81 (504)
T ss_dssp EEEEEEECS
T ss_pred EEEEEeCCC
Confidence 999999998
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=7.5e-06 Score=83.39 Aligned_cols=76 Identities=13% Similarity=0.032 Sum_probs=63.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
|+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++++.+.+++++++ +.+.++.
T Consensus 3 mm~~~lgIDiGtts~k~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~~~ 72 (511)
T 3hz6_A 3 LAFYIATFDIGTTEVKAALADR---------DGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVDAR 72 (511)
T ss_dssp CCCEEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCCGG
T ss_pred cccEEEEEEeCCCceEEEEECC---------CCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCChh
Confidence 4569999999999999999999 89999887665431 123579999999999999999 7777778
Q ss_pred CcceEEEeecCC
Q 017527 94 AVRAVCLAVSGV 105 (370)
Q Consensus 94 ~v~~IgIgvpG~ 105 (370)
+|.+|||+..+.
T Consensus 73 ~I~~Igis~q~~ 84 (511)
T 3hz6_A 73 RVSAIVLSGQMQ 84 (511)
T ss_dssp GEEEEEEEECCS
T ss_pred HeEEEEEecccc
Confidence 899999997663
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=83.02 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=61.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
+.|+||||+|+|++|++++|. +|+++.+.+.+.. .....+++++++.+.+++++++++.+.++.+
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~---------~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~ 74 (554)
T 3l0q_A 4 ASYFIGVDVGTGSARAGVFDL---------QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINPIQ 74 (554)
T ss_dssp CCEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred CcEEEEEEECcccEEEEEECC---------CCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCHhH
Confidence 459999999999999999998 8999988766532 1123579999999999999999988888888
Q ss_pred cceEEEee
Q 017527 95 VRAVCLAV 102 (370)
Q Consensus 95 v~~IgIgv 102 (370)
|.+|||+-
T Consensus 75 I~~Igis~ 82 (554)
T 3l0q_A 75 VKGLGFDA 82 (554)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEcC
Confidence 99999853
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.5e-05 Score=79.81 Aligned_cols=75 Identities=16% Similarity=0.205 Sum_probs=62.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
.+|+||||+|+|++|++++|. +|+++...+.+.. ....++++++.+.+.+++++++++++.++.+
T Consensus 3 kkYvlgID~GTss~Ka~l~d~---------~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~~~ 73 (526)
T 3ezw_A 3 KKYIVALDQGTTSSRAVVMDH---------DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISSDQ 73 (526)
T ss_dssp CCEEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCGGG
T ss_pred ceEEEEEEccccceeeeEEcC---------CCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCChhh
Confidence 469999999999999999998 8999987655422 1122479999999999999999999999999
Q ss_pred cceEEEeecC
Q 017527 95 VRAVCLAVSG 104 (370)
Q Consensus 95 v~~IgIgvpG 104 (370)
|.+|||+--+
T Consensus 74 I~aIgis~q~ 83 (526)
T 3ezw_A 74 IAAIGITNQR 83 (526)
T ss_dssp EEEEEEEECS
T ss_pred EEEEEEeCCC
Confidence 9999987544
|
| >3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0038 Score=60.84 Aligned_cols=247 Identities=17% Similarity=0.149 Sum_probs=139.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC---CccccCHHHHHHHHHHHHHHHHHHcCCC--ccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVGEDAARETIEKVMADALLKSGSN--RSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~---n~~~~~~~~~~~~l~~~i~~~l~~~~~~--~~~v~~ 97 (370)
-+|.+..|.+++|+.+++.. +.+++.+.....- .....+-+++++.|.+.+. +.+.. .+++.+
T Consensus 13 ~iLviN~GSSSlK~~l~~~~--------~~~~l~~G~~e~ig~~~~~~~~h~~a~~~il~~L~----~~~~~~~~~~i~a 80 (391)
T 3r9p_A 13 RVLVINSGSSSLKFQLVDPE--------FGVAASTGIVERIGEESSPVPDHDAALRRAFDMLA----GDGVDLNTAGLVA 80 (391)
T ss_dssp EEEEEEECSSCEEEEEEETT--------TTEEEEEEEECCTTCTTCSCCSHHHHHHHHHHHHH----HTTCCTTTTTEEE
T ss_pred eEEEEecCchhheeEEEecC--------CCceEEEEEEeecCCCccCccCHHHHHHHHHHHHH----hcCCCCcccceeE
Confidence 48999999999999999862 3566666544321 1111234555665555443 44433 357888
Q ss_pred EEEe-ecCC--------CChhhH---------------HHH--HHHHHhhCCCCce-EEEeChHH-------HHHHh---
Q 017527 98 VCLA-VSGV--------NHPTDQ---------------QRI--LNWLRDIFPGNVR-LYVHNDAL-------AALAS--- 140 (370)
Q Consensus 98 IgIg-vpG~--------~~~~~~---------------~~l--~~~L~~~f~~~~p-V~V~NDa~-------aa~~g--- 140 (370)
||.= |.|= +++.-- .+| ....++.||+ +| |+|-.-+. +...+
T Consensus 81 VGhRvVhGG~~f~~~~~I~~~vl~~l~~~~~lAPLHnp~nL~gI~a~~~~~P~-~p~VavFDTaFh~tmp~~A~~y~lP~ 159 (391)
T 3r9p_A 81 VGHRVVHGGNTFYRPTVLDDAVIARLHELSELAPLHNPPALQGIEVARRLLPD-IAHVAVFDTGFFHDLPPAAATYAIDR 159 (391)
T ss_dssp EEEEESCCTTTCCSCEECCHHHHHHHHTTGGGSTTTHHHHHHHHHHHHHHCTT-SEEEEEETTGGGTTCCHHHHCCSSCH
T ss_pred EecCCCCCCCCCCCCEECcHHHHHHHHhcCcCCcccCHHHHHHHHHHHHHCCC-CCEEEEECChhhccccHHHHHcCCCH
Confidence 8752 3442 121110 011 2335677875 78 56554331 11000
Q ss_pred --------------------------hcCCC----CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchH
Q 017527 141 --------------------------GTMGK----LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGY 185 (370)
Q Consensus 141 --------------------------~~~g~----~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~ 185 (370)
+..|. .+.|++.+|.|+.. .-+.+|+... ...-|.+.+...+
T Consensus 160 e~~~~~giRryGFHGlS~~yva~r~a~~lgk~~~~~~lIv~HLGnGaSv-~Ai~~GksvDtsmG~tpleGl~mgtRsG-- 236 (391)
T 3r9p_A 160 ELADRWQIRRYGFHGTSHRYVSEQAAAFLDRPLRGLKQIVLHLGNGCSA-SAIAGTRPLDTSMGLTPLEGLVMGTRSG-- 236 (391)
T ss_dssp HHHHHTTCSCCCSCHHHHHHHHHHHHHHTTSCGGGCEEEEEEESSSEEE-EEEETTEEEEESCCSSTTSSSCCSSCCC--
T ss_pred HHHHhcCceEeceeHHhHHHHHHHHHHHhCCChHHcCEEEEEeCCCcEe-EEEECCEEEeeCCCCCcccCCCCCCCCC--
Confidence 11232 37899999999844 5568999863 1133444332211
Q ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHH--hhhHHHHHHHHhcCCHHHHHHHHHHH
Q 017527 186 GIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARI--AALVPVVVSCAEAGDEVANKILQDSV 263 (370)
Q Consensus 186 ~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~--a~~~~~v~~~A~~GD~~A~~il~~a~ 263 (370)
..++..+ -.+.+..+. +.+++...++++.....+ ....++|.+++++||+.|+.+++-++
T Consensus 237 ----------------diDp~~l-~~l~~~~g~-s~~ei~~~Lnk~SGLlglsG~~D~R~v~~~~~~gd~~A~lA~d~f~ 298 (391)
T 3r9p_A 237 ----------------DIDPSIV-SYLCHTAGM-GVDDVESMLNHRSGVVGLSGVRDFRRLRELIESGDGAAQLAYSVFT 298 (391)
T ss_dssp ----------------SCCTHHH-HHHHHHSCC-CHHHHHHHHHHSCHHHHHHSCSCSHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------CCChHHH-HHHHHhcCC-CHHHHHHHHHhccCceeecCCCCHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0111111 112222221 334444333321100000 02457899999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHH
Q 017527 264 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKC 312 (370)
Q Consensus 264 ~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~ 312 (370)
..+++.|.++...|+ .++.||+.||+.+..+.+ .+.+.+.
T Consensus 299 yri~k~Iga~aa~Lg-------~vDaIVfTGGIgens~~v--R~~i~~~ 338 (391)
T 3r9p_A 299 HRLRKYIGAYLAVLG-------HTDVISFTAGIGENDAAV--RRDAVSG 338 (391)
T ss_dssp HHHHHHHHHHHHHHS-------SCCEEEEEHHHHHHCHHH--HHHHHTT
T ss_pred HHHHHHHHHHHHHhC-------CCCEEEECcccccCCHHH--HHHHHHH
Confidence 999999999999995 279999999999854333 4444433
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=79.34 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=58.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
++||||+|+|++|++++|. +|+++.+.+.+.+. ....+++++++.+.+++++++++.. +.+|.
T Consensus 1 ~~lgiDiGtt~~k~~l~d~---------~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~--~~~i~ 69 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNE---------QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS--LQDVK 69 (484)
T ss_dssp CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC--CTTCC
T ss_pred CEEEEEecCcccEEEEECC---------CCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC--ccceE
Confidence 4799999999999999998 89999988665431 1124789999999999999987753 45799
Q ss_pred eEEEeecC
Q 017527 97 AVCLAVSG 104 (370)
Q Consensus 97 ~IgIgvpG 104 (370)
+|||+.+|
T Consensus 70 ~Igis~~~ 77 (484)
T 2itm_A 70 ALGIAGQM 77 (484)
T ss_dssp EEEEEECS
T ss_pred EEEEcCCc
Confidence 99999999
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.4e-05 Score=76.37 Aligned_cols=72 Identities=17% Similarity=0.217 Sum_probs=59.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n------~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
.|+||||+|+|++|++++|. +|+++.+.+.+.+. ....+++++.+.+.+++++++++.+ .+|
T Consensus 4 ~~~lgIDiGtts~K~~l~d~---------~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~---~~I 71 (504)
T 3ll3_A 4 KYIIGMDVGTTATKGVLYDI---------NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKID---GKI 71 (504)
T ss_dssp EEEEEEEECSSEEEEEEEET---------TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTCS---SEE
T ss_pred CEEEEEEecCCceEEEEEcC---------CCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhCC---CCe
Confidence 59999999999999999999 89999988765431 1235799999999999999988765 579
Q ss_pred ceEEEeecCC
Q 017527 96 RAVCLAVSGV 105 (370)
Q Consensus 96 ~~IgIgvpG~ 105 (370)
.+|||+.-+.
T Consensus 72 ~~Igis~q~~ 81 (504)
T 3ll3_A 72 AAISWSSQMH 81 (504)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEECCCC
Confidence 9999988654
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.6e-05 Score=76.44 Aligned_cols=71 Identities=11% Similarity=0.039 Sum_probs=54.3
Q ss_pred CCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCC-----ccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 017527 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-----HNSVGEDAARETIEKVMADALLKSGSNRS 93 (370)
Q Consensus 19 ~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n-----~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 93 (370)
+|+.|+||||+|+|++|++++|. +|+++.+.+.+... ....+++++.+.+.+++++++ + .
T Consensus 3 ~mm~~~lgIDiGTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~-~-----~ 67 (482)
T 3h6e_A 3 LSTGATIVIDLGKTLSKVSLWDL---------DGRMLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA-D-----H 67 (482)
T ss_dssp -----CEEEEECSSEEEEEEECT---------TSCEEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT-T-----S
T ss_pred hhhceEEEEEcCCCCeEEEEEEC---------CCcEEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH-h-----c
Confidence 35679999999999999999998 89999887766531 112478999999999988876 2 5
Q ss_pred CcceEEEeecC
Q 017527 94 AVRAVCLAVSG 104 (370)
Q Consensus 94 ~v~~IgIgvpG 104 (370)
+|.+|||+..+
T Consensus 68 ~I~aIgis~~~ 78 (482)
T 3h6e_A 68 PVTTIVPVGHG 78 (482)
T ss_dssp CCCEEEEEECS
T ss_pred CCCEEEEecCc
Confidence 79999999876
|
| >2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0012 Score=61.48 Aligned_cols=127 Identities=19% Similarity=0.123 Sum_probs=84.1
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|.||+|.|++++++++. ++++...+..+... .+.++.... +.++++..+.++.++.++.|+.
T Consensus 1 MlL~IDIGNT~ik~gl~~~----------~~l~~~~r~~T~~~--~t~de~~~~----l~~ll~~~~~~~~~i~~iiISS 64 (268)
T 2h3g_X 1 MIFVLDVGNTNAVLGVFEE----------GELRQHWRMETDRH--KTEDEYGML----VKQLLEHEGLSFEDVKGIIVSS 64 (268)
T ss_dssp CEEEEEECSSEEEEEEEET----------TEEEEEEEEECCTT--CCHHHHHHH----HHHHHHHTTCCGGGCCEEEEEE
T ss_pred CEEEEEECcCcEEEEEEEC----------CEEEEEEEecCCCc--CCHHHHHHH----HHHHHHHcCCCcccCcEEEEEc
Confidence 3689999999999999997 67887777665433 245655444 4556666677667788877765
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEe------------C------hHHHHHHhh--cCCCCCeEEEEEcccceeeee
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVH------------N------DALAALASG--TMGKLHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~------------N------Da~aa~~g~--~~g~~~~v~l~~GTGi~g~gi 162 (370)
+ + |.-...+.+.+++.|+. .|++|. | |-.++++++ .++ .+.++|-+||=+---.+
T Consensus 65 V--v-p~~~~~l~~~~~~~~~~-~~~~v~~~~~~gl~~~y~~P~~lG~DR~~~~vaA~~~~~-~~~iVVD~GTAtT~d~v 139 (268)
T 2h3g_X 65 V--V-PPIMFALERMCEKYFKI-KPLVVGPGIKTGLNIKYENPREVGADRIVNAVAGIHLYG-SPLIIVDFGTATTYCYI 139 (268)
T ss_dssp S--C-HHHHHHHHHHHHHHTCC-CCEECSTTCCCCCEECSSCGGGSCHHHHHHHHHHHHHHC-SSEEEEEESSEEEEEEE
T ss_pred c--C-hhHHHHHHHHHHHHhCC-CeEEEcCCCCCCccccCCChhhcCHHHHHHHHHHHHhcC-CCEEEEECCCceEEEEE
Confidence 4 4 65667788888888862 344431 1 223344443 245 58999999999854434
Q ss_pred ccCCceEe
Q 017527 163 TEDGRDAR 170 (370)
Q Consensus 163 i~dG~l~~ 170 (370)
..+|+...
T Consensus 140 ~~~g~~lG 147 (268)
T 2h3g_X 140 NEEKHYMG 147 (268)
T ss_dssp CTTSEEEE
T ss_pred CCCCcEEE
Confidence 45676543
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00012 Score=74.66 Aligned_cols=71 Identities=17% Similarity=0.130 Sum_probs=56.4
Q ss_pred CCcEEEEEEcCccceEEEEEe-CCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d-~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
.+.|+||||+|+|++|++++| . +|+++.+.+.+.+.....+++++.+.+.+++++ .+. ..+|.+|
T Consensus 3 ~~~~~lgIDiGtts~ka~l~d~~---------~G~i~~~~~~~~~g~~e~d~~~~~~~i~~~l~~----~~~-~~~I~~I 68 (515)
T 3i8b_A 3 LRTLVAGVDTSTQSCKVRVTDAE---------TGELVRFGQAKHPNGTSVDPSYWWSAFQEAAEQ----AGG-LDDVSAL 68 (515)
T ss_dssp CSCEEEEEEECSSEEEEEEEETT---------TCCEEEEEEEECCSSSEECTHHHHHHHHHHHHH----TTC-STTEEEE
T ss_pred CCcEEEEEEeccccEEEEEEECC---------CCeEEEEEEEeCCCCceECHHHHHHHHHHHHHh----cCC-ccCceEE
Confidence 356999999999999999999 7 799999887776543345788888887776654 343 4689999
Q ss_pred EEeecC
Q 017527 99 CLAVSG 104 (370)
Q Consensus 99 gIgvpG 104 (370)
||+..+
T Consensus 69 gis~q~ 74 (515)
T 3i8b_A 69 AVGGQQ 74 (515)
T ss_dssp EEEECS
T ss_pred EEeCCc
Confidence 999887
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.043 Score=52.34 Aligned_cols=120 Identities=13% Similarity=0.159 Sum_probs=76.6
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc-ccCHH----HHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-SVGED----AARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~-~~~~~----~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||||.+.+.+.+++++. ++++........... ...|+ .-.+.+..+|++++++++++.+++.+
T Consensus 2 ~iLgIdts~~~~~val~~~----------g~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~~did~ 71 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE----------DKVLANVFDTLTTEKGGIHPKEAAEHHARLMKPLLRKALSEAGVSLDDIDV 71 (330)
T ss_dssp CEEEEECSSSEEEEEEECS----------SCEEEEEEEECCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCE
T ss_pred EEEEEEccCCCeEEEEEEC----------CEEEEEEEEEeecccCCcCchhhHHHHHHHHHHHHHHHHHHcCCCHHHCcE
Confidence 5899999999999999986 688866543211110 11233 34566778999999999999999999
Q ss_pred EEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC-CC-CCeEEEEEc
Q 017527 98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM-GK-LHGCVLIAG 154 (370)
Q Consensus 98 IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~-g~-~~~v~l~~G 154 (370)
|+++. ||.... .-...+.+.|...++ .|++-.|--.|-+++..+ +. ...+++..|
T Consensus 72 Ia~~~GPG~~~~lrvg~~~ak~la~~~~--~pl~~v~h~~aHa~~a~~~~~~~~~~l~v~G 130 (330)
T 2ivn_A 72 IAFSQGPGLGPALRVVATAARALAVKYR--KPIVGVNHCIAHVEITKMFGVKDPVGLYVSG 130 (330)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHHGGGGGTCCSCEEEEECS
T ss_pred EEEECCCCchHHHHHHHHHHHHHHHHcC--CCEEeeCcHHHHHHHHhhcCCCCCeEEEEcC
Confidence 98752 543210 112345566666776 898877776665554433 21 234445555
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00012 Score=73.74 Aligned_cols=73 Identities=8% Similarity=-0.011 Sum_probs=53.5
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecC----------CCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC----------SNHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~----------~n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.++||||+|+|++|++++|. +|+++.....+. ......+++++++.+.++++++...
T Consensus 4 ~~~lgiDiGtts~k~~l~d~---------~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~---- 70 (489)
T 2uyt_A 4 RNCVAVDLGASSGRVMLARY---------ERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA---- 70 (489)
T ss_dssp EEEEEEEECSSEEEEEEEEE---------EGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT----
T ss_pred ceEEEEEecCCCceEEEEEe---------cCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC----
Confidence 47999999999999999998 688776543221 1111236889999999999887652
Q ss_pred ccCcceEEEee----cCCCC
Q 017527 92 RSAVRAVCLAV----SGVNH 107 (370)
Q Consensus 92 ~~~v~~IgIgv----pG~~~ 107 (370)
..+|.+|||+. +++.|
T Consensus 71 ~~~i~~Igis~q~~~~v~~D 90 (489)
T 2uyt_A 71 GIAIDSIGIDTWGVDFVLLD 90 (489)
T ss_dssp TCCCCEEEEEECSSCEEEEC
T ss_pred CCCceEEEEecCcccEEEEC
Confidence 24799999998 66544
|
| >2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.1 Score=51.17 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=54.0
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+++.+||+.|+.+++-++..+.+.|.++...++- .+.||+.||+.+..+.+ .+.+.+.+
T Consensus 291 D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~aa~Lgg-------vDaIVFTgGIGEns~~v--R~~i~~~l 355 (415)
T 2e1z_A 291 DLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHR-------LDGIIFTGGIGENSVLI--RQLVIEHL 355 (415)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCSS-------CCEEEEEHHHHHHCHHH--HHHHHHTT
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECccccccCHHH--HHHHHhhH
Confidence 4588888889999999999999999999999999998862 68999999999765443 55555544
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00072 Score=69.11 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=51.4
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC----C------cc-------ccCHH-HHHHHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----N------HN-------SVGED-AARETIEKVMA 82 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~----n------~~-------~~~~~-~~~~~l~~~i~ 82 (370)
+.|+||||+|+|++|++++|. +|+++.+...+.. . .. .++++ ...+.+..+.
T Consensus 9 ~~~~lgID~GTts~Ka~l~d~---------~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~- 78 (538)
T 4bc3_A 9 RRCCLGWDFSTQQVKVVAVDA---------ELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIIL- 78 (538)
T ss_dssp CCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHH-
T ss_pred CCEEEEEEEcCcCEEEEEECC---------CCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHH-
Confidence 359999999999999999998 8999998765431 0 00 01344 3445554444
Q ss_pred HHHHHcCCCccCcceEEEeec
Q 017527 83 DALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 83 ~~l~~~~~~~~~v~~IgIgvp 103 (370)
+.+.+.+.++.+|.+|||+--
T Consensus 79 ~~l~~~~~~~~~I~aIgis~q 99 (538)
T 4bc3_A 79 EKMKASGFDFSQVLALSGAGQ 99 (538)
T ss_dssp HHHHHTTCCGGGEEEEEEEEC
T ss_pred HHHHHcCCChHHeEEEEeccc
Confidence 455667777889999988754
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.15 Score=50.26 Aligned_cols=76 Identities=12% Similarity=0.114 Sum_probs=54.3
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
..+++|+|||.|++++++.... ++..+++.....++.-. .-.+.+.+.+.|.++++++-..++. ++..
T Consensus 7 ~~~ivglDIGts~I~~vv~~~~------~~~~~i~g~~~~~s~gv~~G~I~di~~~~~~I~~av~~ae~~~g~---~i~~ 77 (419)
T 4a2a_A 7 TVFYTSIDIGSRYIKGLVLGKR------DQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQK---SLRS 77 (419)
T ss_dssp CCEEEEEEECSSEEEEEEEEC----------CEEEEEEEEECCSEETTEESBHHHHHHHHHHHHHHHHHHHTS---CCCS
T ss_pred CCEEEEEEccCCEEEEEEEEEc------CCCCEEEEEEEeccCCeeCCEEEcHHHHHHHHHHHHHHHHHHcCC---CcCc
Confidence 5689999999999999999751 10127777766553211 1135788888888888888776764 5777
Q ss_pred -EEEeecCC
Q 017527 98 -VCLAVSGV 105 (370)
Q Consensus 98 -IgIgvpG~ 105 (370)
+.+++||-
T Consensus 78 ~v~v~i~g~ 86 (419)
T 4a2a_A 78 DFVISFSSV 86 (419)
T ss_dssp EEEEEECCT
T ss_pred eEEEEEcCC
Confidence 88888887
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.49 Score=45.12 Aligned_cols=135 Identities=16% Similarity=0.200 Sum_probs=80.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC-CccccCHH----HHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGED----AARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~-n~~~~~~~----~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
++||||--...+.+++++. ++++........ .....-|+ .-.+.+..+|++++++++++.++|.+
T Consensus 7 ~iLgIdts~~~~svAl~~~----------~~i~~~~~~~~~~~~gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~~did~ 76 (334)
T 3eno_A 7 IVLGLEGTAHTISCGIIDE----------SRILAMESSMYRPKTGGIRPLDAAVHHSEVIDTVISRALEKAKISIHDIDL 76 (334)
T ss_dssp EEEEEECSSSEEEEEEEES----------SCCCEEEEEECCCSSCSCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCCE
T ss_pred eEEEEECCCcCeEEEEEEC----------CEEEEEEEEeeccccCCcCcchHHHHHHHHHHHHHHHHHHHcCCCHHHCCE
Confidence 7999999988899999986 677775433211 11111233 23467888999999999999999999
Q ss_pred EEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CC-CCCeEEEEEcccceeeeeccCCceEe
Q 017527 98 VCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 98 IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g-~~~~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
|+++. ||.... .-.....+.|...++ .|++-.|--.+-+++.. .+ ....++++.|.++--+ ...+|+...
T Consensus 77 Iav~~gPG~~t~lrvg~~~ak~La~~~~--~Pl~~v~hl~aHa~sa~~~s~~~~pl~L~vsGg~t~l~-~~~~~~~~~ 151 (334)
T 3eno_A 77 IGFSMGPGLAPSLRVTATAARTISVLTG--KPIIGVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQVI-AHVNGRYRV 151 (334)
T ss_dssp EEEECSSSCHHHHHHHHHHHHHHHHHHT--CCCEEECHHHHHHHHHHHHHTCSSCEEEEESSSCEEEE-EECSSBEEE
T ss_pred EEEEcCCCCcchHHHHHHHHHHHhhccC--CCeEEeccHHHHHHHHHhcCCCCCCEEEEEECCCcEEE-EEeCCEEEE
Confidence 99986 443210 012344556666666 78776664443222221 12 1335555566664222 234455433
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.072 Score=49.94 Aligned_cols=106 Identities=17% Similarity=0.137 Sum_probs=60.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+.+|||+|+|.+++++++. ++++... .+.. ..+++++.+ + ..++..|.+
T Consensus 20 ~~~iGIDiGsTt~K~V~~~~----------~~i~~~~-~~~~-----~~~~~l~~l--------~-----~~~~~~i~~- 69 (287)
T 2ews_A 20 HMKVGIDAGGTLIKIVQEQD----------NQRTFKT-ELTK-----NIDQVVEWL--------N-----QQQIEKLCL- 69 (287)
T ss_dssp -CEEEEEECSSEEEEEEECS----------SCEEEEE-EEGG-----GHHHHHHHH--------H-----TSCCSEEEE-
T ss_pred CeEEEEEEChhhEEEEEEcC----------CEEEEEE-echH-----HHHHHHHHh--------c-----ccCceEEEE-
Confidence 48999999999999999964 7887663 2221 122322221 1 123444443
Q ss_pred ecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CCC-----CCeEEEEEcccceeeeeccC-CceEe
Q 017527 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGK-----LHGCVLIAGTGTIAYGFTED-GRDAR 170 (370)
Q Consensus 102 vpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g~-----~~~v~l~~GTGi~g~gii~d-G~l~~ 170 (370)
.|.-. ..+.+.++ .|....+...|-..|.. ... .+.+++-+|+|. .. +..+ +...|
T Consensus 70 -TG~G~--------~~~~~~l~--~~~~~v~Ei~~~~~Ga~~l~~~~~~~~~~~~vIdIGg~d-si-i~v~~~~f~r 133 (287)
T 2ews_A 70 -TGGNA--------GVIAENIN--IPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGT-SL-HYFDGQSQRR 133 (287)
T ss_dssp -ESTTH--------HHHHTTSS--SCCEECCHHHHHHHHHHHHHHHTTCCCSCEEEEEESSSE-EE-EEECSSCEEE
T ss_pred -EChhH--------HhHhHhhC--CCcceeehhHHHHHHHHHhcccCCCCcCCeEEEEeCCCe-EE-EEEcCCceEE
Confidence 44431 12233555 67777788877655432 121 357899999997 43 3344 44444
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.89 Score=46.01 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=67.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc-----ccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-----SVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~-----~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.++||||.....+.+++++. ++++++.......... ..-...-.+.+..++++++++ ++++++.
T Consensus 6 m~iL~i~ts~~~~~~al~~~---------~~~~~~~~~~~~~~~~gg~~p~~a~~~h~~~l~~~i~~~l~~--~~~~~id 74 (540)
T 3en9_A 6 MICLGLEGTAEKTGVGIVTS---------DGEVLFNKTIMYKPPKQGINPREAADHHAETFPKLIKEAFEV--VDKNEID 74 (540)
T ss_dssp CEEEEEECSSSEEEEEEEET---------TSCEEEEEEEECCCCCSSSSCCCHHHHHHHHHHHHHHHHHHH--SCGGGCC
T ss_pred ceEEEEEcCccceEEEEEEC---------CCeEEEEEEEeecCCCCCCChHHHHHHHHHHHHHHHHHHHHh--CCHhHCc
Confidence 38999999999999999987 5588877654322100 001134466788888999987 7778899
Q ss_pred eEEEee-cCCCCh-hhHHHHHHHHHhhCCCCceEEEeChHHH
Q 017527 97 AVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 97 ~IgIgv-pG~~~~-~~~~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
+|+++. ||.... .-.....+-|...++ +|++-.|--.+
T Consensus 75 ~ia~~~gPG~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~a 114 (540)
T 3en9_A 75 LIAFSQGPGLGPSLRVTATVARTLSLTLK--KPIIGVNHCIA 114 (540)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHHHHT--CCEEEEEHHHH
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCeeEeccHHH
Confidence 998876 664221 112345566766676 78886665443
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=96.44 E-value=0.71 Score=44.48 Aligned_cols=90 Identities=14% Similarity=0.073 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHHHHHHHc-CCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC----
Q 017527 69 GEDAARETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---- 143 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~-~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---- 143 (370)
.++++...+...+.+..+.. + ..+..+.|++|-.-++.....+++..+.. +. ..+.+.|+..||+++...
T Consensus 134 ~~~ei~a~~L~~l~~~a~~~~~---~~~~~~vitvPa~~~~~~r~~~~~a~~~A-Gl-~~~~li~Ep~AAa~~~~~~~~~ 208 (404)
T 3i33_A 134 FPEEISSMVLTKMKEIAEAYLG---GKVHSAVITVPAYFNDSQRQATKDAGTIT-GL-NVLRIINEPTAAAIAYGLDKKG 208 (404)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS---SCCCEEEEEECTTCCHHHHHHHHHHHHHH-TC-EEEEEEEHHHHHHHHTTTTSSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhc---cCCCcEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEeccHHHHHHHHHhhccc
Confidence 45555555544444443322 2 34677899999887666666777776654 32 468899999998875321
Q ss_pred ---CCCCeEEEEEcccceeeeec
Q 017527 144 ---GKLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 144 ---g~~~~v~l~~GTGi~g~gii 163 (370)
.....+++=+|.|+.-..++
T Consensus 209 ~~~~~~~vlV~D~GgGT~dvsv~ 231 (404)
T 3i33_A 209 CAGGEKNVLIFDLGGGTFDVSIL 231 (404)
T ss_dssp SSSSCCEEEEEEECSSCEEEEEE
T ss_pred ccCCCceEEEEECCCCcEEEEEE
Confidence 12344667788887554444
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.39 Score=45.85 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=76.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--eEEEEEecCCCc-----cccCHHHHHHHHHHHHHHHHHHcCCCccC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNH-----NSVGEDAARETIEKVMADALLKSGSNRSA 94 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il~~~~~~~~n~-----~~~~~~~~~~~l~~~i~~~l~~~~~~~~~ 94 (370)
..++|||+|.|+++++++.. ++ +......+.+.. .-.+++.+.+.|.+++.+ .+. +
T Consensus 13 ~~~vgiDiGt~~i~~~~~~~----------~~~~i~~~g~~~~ps~~~~~g~i~d~~~~~~~ik~~~~~----~~~---~ 75 (377)
T 2ych_A 13 VEALGLEIGASALKLVEVSG----------NPPALKALASRPTPPGLLMEGMVAEPAALAQEIKELLLE----ART---R 75 (377)
T ss_dssp CCCEEEEECSSEEEEEEEET----------TTTEEEEEEEEECCTTSEETTEESCHHHHHHHHHHHHHH----HTC---C
T ss_pred CceEEEEeCCCeEEEEEEeC----------CceEEEEEEeEECCCCcccCCCcCCHHHHHHHHHHHHHH----cCC---C
Confidence 46899999999999998864 33 433333332211 112466666666665554 443 4
Q ss_pred cceEEEeecCC-----------CChhhH--------------------------------------------------HH
Q 017527 95 VRAVCLAVSGV-----------NHPTDQ--------------------------------------------------QR 113 (370)
Q Consensus 95 v~~IgIgvpG~-----------~~~~~~--------------------------------------------------~~ 113 (370)
+..+.+++||- .++.+- ..
T Consensus 76 ~~~v~~~i~~~~~~~~~~~~~~v~~~el~~~i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v~~va~~~~~v~~ 155 (377)
T 2ych_A 76 KRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAG 155 (377)
T ss_dssp CCEEEEEECGGGCEEEEEEEECCCHHHHHHHHHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEEEEEEEEHHHHHH
T ss_pred cceEEEEecCCcEEEEEEECCCCCHHHHHHHHHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEEEEEEecHHHHHH
Confidence 55677888882 111110 22
Q ss_pred HHHHHHhhCCCCceEEEeChHHHHHHhh--c--CCCCC-eEEEEEcccceeeeeccCCceEe
Q 017527 114 ILNWLRDIFPGNVRLYVHNDALAALASG--T--MGKLH-GCVLIAGTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 114 l~~~L~~~f~~~~pV~V~NDa~aa~~g~--~--~g~~~-~v~l~~GTGi~g~gii~dG~l~~ 170 (370)
+.+.++. .+. .++.+.++..|++.+. . ..... .+++-+|.|+.-..++.+|++..
T Consensus 156 ~~~~~~~-aGl-~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~~ 215 (377)
T 2ych_A 156 VLEALRG-AGL-VPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA 215 (377)
T ss_dssp HHHHHHH-TTC-EEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEEE
T ss_pred HHHHHHH-CCC-ceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEEE
Confidence 3444433 342 4677888888776542 1 11223 46788998887777778888754
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=95.82 E-value=1.5 Score=42.41 Aligned_cols=67 Identities=9% Similarity=-0.061 Sum_probs=45.0
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC-----CC-CCeEEEEEcccceeeee
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM-----GK-LHGCVLIAGTGTIAYGF 162 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~-----g~-~~~v~l~~GTGi~g~gi 162 (370)
.+..+.|++|-.-+......+++..+.. +. ..+.+.|+..||+++... .. ...+++=+|.|+.-..+
T Consensus 149 ~~~~~vitvPa~~~~~~r~~~~~a~~~A-Gl-~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv 221 (409)
T 4gni_A 149 KVTSAVITIPTNFTEKQKAALIAAAAAA-DL-EVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTV 221 (409)
T ss_dssp CCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEE
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEE
Confidence 5677889999986665666777777665 32 467899999998875321 11 23556668888754444
|
| >2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.042 Score=53.81 Aligned_cols=65 Identities=18% Similarity=0.112 Sum_probs=53.8
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+++.+||+.|+.+++-++..+.+.|.++...++- .+.||+.||+.+..+.+ .+.+.+.+
T Consensus 283 D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~~a~Lgg-------vDaIVFTgGIGEns~~v--R~~i~~~l 347 (403)
T 2iir_A 283 DMRDIEEAALKGDEWCKLVLEIYDYRIAKYIGAYAAAMNG-------VDAIVFTAGVGENSPIT--REDVCSYL 347 (403)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CSEEEEEHHHHTTCHHH--HHHHHHTT
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECcccccCCHHH--HHHHHhhh
Confidence 4588888889999999999999999999999999999872 68999999999765443 55555444
|
| >1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.035 Score=54.46 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=83.6
Q ss_pred CCeEEEEEcccceeeeeccCCceEe-eCCC----CCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGA----GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~-aGg~----G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
.+.|++.+|.|+ ...-+.+|+..- .-|+ |.+.|... |..++..+ -.+.+..+ -+
T Consensus 202 ~~lIv~HLGnGa-Si~Ai~~GksVDTsMG~TpleGl~MgTRs------------------GdiDp~~l-~~l~~~~~-~s 260 (408)
T 1g99_A 202 TKIITCHLGNGS-SITAVEGGKSVETSMGFTPLEGLAMGTRC------------------GSIDPAIV-PFLMEKEG-LT 260 (408)
T ss_dssp CEEEEEEESSSE-EEEEEETTEEEEESCCSSTTSSSCCSSCC------------------CSCCTTHH-HHHHHHHT-CC
T ss_pred CCEEEEEeCCcc-chhheECCEEEEeCCCCCCCCCCCCCCCC------------------CCCCHHHH-HHHHHhcC-CC
Confidence 478899999998 444558999753 1221 22222211 11111111 22222222 24
Q ss_pred hhhHHHHhccCCChH---HHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcc
Q 017527 221 PDELIGWTYVDPSWA---RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297 (370)
Q Consensus 221 ~~~l~~~~~~~~~~~---~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~ 297 (370)
.+++...++++.... .+....++|.+++.+||+.|+.+++-++..+.+.|.++...++- .+.||+.||+.
T Consensus 261 ~~ei~~~Lnk~SGLlglsG~s~D~R~l~~~~~~Gd~~A~lA~d~f~yri~k~IGa~~a~Lgg-------vDaiVFTgGIG 333 (408)
T 1g99_A 261 TREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNG-------ADAVVFTAGIG 333 (408)
T ss_dssp HHHHHHHHHHSCHHHHHHSSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CSEEEEEHHHH
T ss_pred HHHHHHHHhhcCCceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC-------CCEEEECcccc
Confidence 444444443222100 11234588888889999999999999999999999999999972 68999999999
Q ss_pred cCcccccchHHHHHHH
Q 017527 298 EANRRWDIGREVVKCI 313 (370)
Q Consensus 298 ~~~~~~~l~~~v~~~l 313 (370)
+..+.+ .+.+.+.+
T Consensus 334 Ens~~v--R~~i~~~l 347 (408)
T 1g99_A 334 ENSASI--RKRILTGL 347 (408)
T ss_dssp HHCHHH--HHHHHTTC
T ss_pred ccCHHH--HHHHHhhh
Confidence 755443 44444333
|
| >3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.098 Score=50.75 Aligned_cols=65 Identities=18% Similarity=0.193 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+++++||+.|+.+++-++..+.+.|.++...++ ..+.||+.||+.+..+.+ .+.+.+.+
T Consensus 274 D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~aa~L~-------gvDaIVFTgGIgEns~~i--R~~i~~~l 338 (384)
T 3khy_A 274 DMREVSQLAAKGDSLAKLAIEIFSHRVAKFVASYMIYFN-------KLDALVFTGGIGENAANI--RKNIISKL 338 (384)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGCS-------SCCEEEEEHHHHHHCHHH--HHHHHHHT
T ss_pred cHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC-------CCCEEEECCccccCcHHH--HHHHHhhc
Confidence 457888899999999999999999999999999988886 279999999999765443 55555544
|
| >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.037 Score=46.24 Aligned_cols=89 Identities=15% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
|++.+||+|.|..+|=+++.|. .+.+..-. +....+. +..++.|.+++++ .++..|
T Consensus 1 ~~~~iLglD~G~kriGvAvsd~---------~~~~A~pl~ti~~~~~-----~~~~~~l~~li~e---------~~v~~i 57 (138)
T 1nu0_A 1 MSGTLMAFDFGTKSIGVAVGQR---------ITGTARPLPAIKAQDG-----TPDWNIIERLLKE---------WQPDEI 57 (138)
T ss_dssp CCCEEEEEECCSSEEEEEEEET---------TTTEEEEEEEEEEETT-----EECHHHHHHHHHH---------HCCSEE
T ss_pred CCCeEEEEEeCCCEEEEEEEcC---------CCCEEeeEEEEEcCCc-----chHHHHHHHHHHH---------cCCCEE
Confidence 4567999999999999999998 44432211 2111111 1124445444443 357889
Q ss_pred EEeec----CCCChhhH--HHHHHHHHhhCCCCceEEEeCh
Q 017527 99 CLAVS----GVNHPTDQ--QRILNWLRDIFPGNVRLYVHND 133 (370)
Q Consensus 99 gIgvp----G~~~~~~~--~~l~~~L~~~f~~~~pV~V~ND 133 (370)
-||+| |-..+... ..+.+.|+++|+ +||...+.
T Consensus 58 VvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~--lpV~~~DE 96 (138)
T 1nu0_A 58 IVGLPLNMDGTEQPLTARARKFANRIHGRFG--VEVKLHDE 96 (138)
T ss_dssp EEEEEECTTSCBCHHHHHHHHHHHHHHHHHC--CCEEEEEE
T ss_pred EEecccCCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcC
Confidence 99998 44443332 478888888887 89877654
|
| >2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.46 Score=44.03 Aligned_cols=121 Identities=23% Similarity=0.242 Sum_probs=73.3
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|..+.|.||+|-|++++++++. +++++...+..+ .++....+ . +.+..++..+.
T Consensus 21 ~~~M~L~IDiGNT~ik~g~~~~---------~~~~~~~~r~~t-------~de~~~~l----~------~~~~~~i~~vi 74 (271)
T 2f9w_A 21 MASMILELDCGNSLIKWRVIEG---------AARSVAGGLAES-------DDALVEQL----T------SQQALPVRACR 74 (271)
T ss_dssp --CEEEEEEECSSCEEEEEEET---------TTEEEEEEEESS-------HHHHHHHH----H------HTTTSCEEEEE
T ss_pred ccCcEEEEEeCCCeeEEEEEeC---------CCEEEEEEEecC-------HHHHHHHH----h------cCcccCCCEEE
Confidence 5568999999999999999993 267777766543 12222222 1 12334677665
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCceEEE---------eC----------hHHHHHHhhc--CCCCCeEEEEEcccce
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYV---------HN----------DALAALASGT--MGKLHGCVLIAGTGTI 158 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V---------~N----------Da~aa~~g~~--~g~~~~v~l~~GTGi~ 158 (370)
++ .+..|.-...|++.+++.|+. .|.+| .| |=.+++++++ ++ .+.+++-+||=+-
T Consensus 75 is--SV~vp~~~~~l~~~~~~~~~~-~p~~v~~~~~~~gl~~~Y~~P~~lGaDR~~~avaA~~~y~-~~~iVVD~GTAtT 150 (271)
T 2f9w_A 75 LV--SVRSEQETSQLVARLEQLFPV-SALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAAHHLAK-KACLVIDLGTAVT 150 (271)
T ss_dssp EE--ECSCHHHHHHHHHHHHHHSSC-CCEECCCCSEETTEECCSSSGGGSCHHHHHHHHHHHHHHS-SCEEEEEESSEEE
T ss_pred EE--ECCchHHHHHHHHHHHHHcCC-CeEEEeCCCccCCceecCCChhhccHHHHHHHHHHHHhcC-CCEEEEEcCCceE
Confidence 54 453566667888889888862 34444 12 2233344432 44 5899999999984
Q ss_pred eeeeccCCceEe
Q 017527 159 AYGFTEDGRDAR 170 (370)
Q Consensus 159 g~gii~dG~l~~ 170 (370)
--.+..+|+...
T Consensus 151 ~D~V~~~G~~lG 162 (271)
T 2f9w_A 151 SDLVAADGVHLG 162 (271)
T ss_dssp EEEECTTSBEEE
T ss_pred EEEECCCCeEEE
Confidence 443434676643
|
| >4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.11 Score=50.67 Aligned_cols=65 Identities=8% Similarity=0.027 Sum_probs=53.2
Q ss_pred hHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGD---EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD---~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+++++|| +.|+.+++-++..+.+.|.++...|+= .+.||+.||+.+..+.+ .+.+.+.+
T Consensus 284 D~R~i~~~~~~gd~~~~~A~lA~d~f~yri~k~IGa~aa~L~G-------vDaIVFTgGIGEns~~v--R~~i~~~l 351 (404)
T 4h0o_A 284 DMRDILHEIETRGPKAKTCQLAFDVYIKQLAKTIGGLMVEIGG-------LDLLVFTDQMGLEVWQV--RKAICDKM 351 (404)
T ss_dssp CHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------CSEEEEEHHHHHHCHHH--HHHHHHHT
T ss_pred CHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCEEEECCccccCcHHH--HHHHHhhh
Confidence 4578888899999 999999999999999999999988872 68999999998754443 55555544
|
| >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.076 Score=44.92 Aligned_cols=93 Identities=15% Similarity=0.153 Sum_probs=57.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEE-EEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~-~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+||||.|-.++-+++.|. .|.+.. ..+..+.+. ..+...+.| .+++++ .++..|.||
T Consensus 4 riLGiDpG~~riGvAv~d~---------~g~~a~p~~~I~~~~~---r~~~~~~~l----~~li~~-----~~~~~ivVG 62 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDE---------MGWTAQGIETIKINEA---EGDYGLSRL----SELIKD-----YTIDKIVLG 62 (150)
T ss_dssp EEEEEEECSSEEEEEEECT---------TSSSEEEEEEEECBGG---GTBCCHHHH----HHHHTT-----SEEEEEEEE
T ss_pred EEEEEEccCCEEEEEEEEC---------CCCEEeeEEEEEcCCc---chHHHHHHH----HHHHHH-----cCCCEEEEe
Confidence 5999999999999999998 676654 233332210 012223334 344443 468889999
Q ss_pred ecCC----CChhhH--HHHHHHHHhhCCCCceEEEeChHHHHH
Q 017527 102 VSGV----NHPTDQ--QRILNWLRDIFPGNVRLYVHNDALAAL 138 (370)
Q Consensus 102 vpG~----~~~~~~--~~l~~~L~~~f~~~~pV~V~NDa~aa~ 138 (370)
.|=- ..+... ..+...|.+.++ +||+..+......
T Consensus 63 lP~~~nGt~~~~~~~ar~f~~~L~~~~~--lpV~~vDEr~Ts~ 103 (150)
T 1vhx_A 63 FPKNMNGTVGPRGEASQTFAKVLETTYN--VPVVLWDERLTTM 103 (150)
T ss_dssp CCCCBTTBCCHHHHHHHHHHHHHHHHHC--SCEEEECCSSCHH
T ss_pred eeecCCcchhHHHHHHHHHHHHHHHhhC--CCEEEecCCCCHH
Confidence 9822 112221 356777777787 8999877765443
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=94.57 E-value=3 Score=39.02 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=51.3
Q ss_pred ceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---CCCCeEEEEEcccceeeeeccCCceE
Q 017527 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 96 ~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g~~~~v~l~~GTGi~g~gii~dG~l~ 169 (370)
..+.|++|-.-+...+..+++.++. ++. ..+.+.|+..||+++... .....+++=+|.|+--..++..|.+.
T Consensus 96 ~~~vitvP~~~~~~~r~~~~~a~~~-aG~-~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~ 170 (344)
T 1jce_A 96 PRVVIGVPIGITDVERRAILDAGLE-AGA-SKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIV 170 (344)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHH-TTC-SEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEE
Confidence 6688999987666666677777654 453 468899999998875322 12467788899888666676777664
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=94.41 E-value=0.52 Score=45.30 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHH-HcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCCCCCeEEEEE
Q 017527 75 ETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (370)
Q Consensus 75 ~~l~~~i~~~l~-~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~ 153 (370)
+.++.+++.++. ..+.++. -..+-|.+|-......+..+.+.+-+.|+. --+++.|++.+|+++. |...+++|-+
T Consensus 80 d~~e~i~~~~~~~~L~~~~~-~~~vvit~p~~~~~~~r~~~~e~~fe~~g~-~~~~~~~e~~aaa~a~--g~~~~lVvDi 155 (375)
T 2fxu_A 80 DDMEKIWHHTFYNELRVAPE-EHPTLLTEAPLNPKANREKMTQIMFETFNV-PAMYVAIQAVLSLYAS--GRTTGIVLDS 155 (375)
T ss_dssp HHHHHHHHHHHHTTSCCCGG-GSCEEEEECTTCCHHHHHHHHHHHHHTTCC-SEEEEEEHHHHHHHHT--TCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCc-CCcEEEEeCCCCcHHHHHHHHHHHHHhcCc-ceEEEccchheeeeec--CCCeEEEEEc
Confidence 445666666663 3444443 245788899887776777788888788872 2488999999998853 5568899999
Q ss_pred cccceeeeeccCCceEe
Q 017527 154 GTGTIAYGFTEDGRDAR 170 (370)
Q Consensus 154 GTGi~g~gii~dG~l~~ 170 (370)
|.|.--...+.+|....
T Consensus 156 G~gtt~v~~v~~G~~~~ 172 (375)
T 2fxu_A 156 GDGVTHNVPIYEGYALP 172 (375)
T ss_dssp CSSCEEEEEEETTEECG
T ss_pred CCCceEEeEeECCEEec
Confidence 99986655677886543
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.6 Score=45.42 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=63.8
Q ss_pred HHHHHHHHHHH-HcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-------CCCCC
Q 017527 76 TIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT-------MGKLH 147 (370)
Q Consensus 76 ~l~~~i~~~l~-~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-------~g~~~ 147 (370)
.++.+++.++. ..+.+++ ...+-|++|-...+..+..+.+.+-+.|+. -.+++.|++.+|+++.+ .+. .
T Consensus 88 ~~e~i~~~~~~~~L~~~~~-~~~vvit~p~~~~~~~r~~~~e~~fe~~g~-~~~~l~~ep~aa~~a~~~~~~~~~~~~-~ 164 (418)
T 1k8k_A 88 LMERFMEQVIFKYLRAEPE-DHYFLLTEPPLNTPENREYTAEIMFESFNV-PGLYIAVQAVLALAASWTSRQVGERTL-T 164 (418)
T ss_dssp HHHHHHHHHHHTTTCCCGG-GCCEEEEECTTCCHHHHHHHHHHHHHTSCC-SEEEEEEHHHHHHHHGGGSTTCCSCCC-C
T ss_pred HHHHHHHHHHHhccCCCCC-CCcEEEEeCCCCCHHHHHHHHHHHHHhcCC-CEEEEechHHHHhhhhhcccccCCCCC-e
Confidence 34455555553 2444433 456889999888777777888888777772 34889999999987632 344 7
Q ss_pred eEEEEEcccceeeeeccCCceE
Q 017527 148 GCVLIAGTGTIAYGFTEDGRDA 169 (370)
Q Consensus 148 ~v~l~~GTGi~g~gii~dG~l~ 169 (370)
++++-+|.|.--..++.+|...
T Consensus 165 glVvDiG~gtt~v~~v~~G~~~ 186 (418)
T 1k8k_A 165 GTVIDSGDGVTHVIPVAEGYVI 186 (418)
T ss_dssp EEEEEESSSCEEEEEEETTEEC
T ss_pred EEEEEcCCCceEEEEeECCEEc
Confidence 8999999998666667788754
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=93.84 E-value=0.13 Score=49.20 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=41.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||+||||-|+|+++.+. +|.+ .....+++-.. +.+. |.++++++.++ +...+|.+
T Consensus 1 ~iiG~DIGGAn~K~a~~~~---------~g~~-~~~~~~~PlW~--~~~~----L~~~l~~~~~~-------~~~~avtM 57 (334)
T 3cet_A 1 MILGIDIGGANTKITELHE---------NGEF-KVHHLYFPMWK--NNDK----LAEVLKTYSND-------VSHVALVT 57 (334)
T ss_dssp CEEEEEEC--CEEEEEECS---------TTCC-EEEEC----------------------------------CCEEEEEE
T ss_pred CeeEEEecccceeeeeecC---------CCce-EEEEEecCCcC--CchH----HHHHHHHHHhh-------hccEEEEe
Confidence 4899999999999999887 6887 55555555332 4333 44444444432 34566888
Q ss_pred cCC-C----ChhhHH-HHHHHHHhhCCCCceE
Q 017527 103 SGV-N----HPTDQQ-RILNWLRDIFPGNVRL 128 (370)
Q Consensus 103 pG~-~----~~~~~~-~l~~~L~~~f~~~~pV 128 (370)
.|= . +..+++ .+.+.+++.|+ .||
T Consensus 58 TgELaD~f~~k~eGV~~I~~~v~~~~~--~~v 87 (334)
T 3cet_A 58 TAELADSYETKKEGVDNILNAAESAFG--SNI 87 (334)
T ss_dssp CCC------CTTHHHHHHHHHHHHHHT--TCE
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHhcC--Cce
Confidence 884 2 233443 67888888897 676
|
| >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.24 Score=38.76 Aligned_cols=83 Identities=11% Similarity=0.085 Sum_probs=52.9
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEE-EEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~-~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+||+|.|..+|=+++.|. .+.+-. ..+.. .. ..+..++.|.+.+++ .++..|-||+
T Consensus 3 iLglD~G~kriGvAvsd~---------~~~~A~pl~ti~--~~---~~~~~~~~l~~li~e---------~~v~~iVvGl 59 (98)
T 1iv0_A 3 VGALDVGEARIGLAVGEE---------GVPLASGRGYLV--RK---TLEEDVEALLDFVRR---------EGLGKLVVGL 59 (98)
T ss_dssp EEEEEESSSEEEEEEECS---------CCSSCCCEEEEE--CC---CHHHHHHHHHHHHHH---------HTCCEEEEEC
T ss_pred EEEEEeCCCEEEEEEEeC---------CCCeeeeeEEEE--cc---CcHHHHHHHHHHHHH---------cCCCEEEEee
Confidence 899999999999999997 443311 11111 11 244555666555554 3578899999
Q ss_pred c----CCCChhh--HHHHHHHHHhhCCCCceEEEeC
Q 017527 103 S----GVNHPTD--QQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 103 p----G~~~~~~--~~~l~~~L~~~f~~~~pV~V~N 132 (370)
| |-..+.. -..+.+.|+++ + +||...+
T Consensus 60 P~~mdGt~~~~~~~~~~f~~~L~~~-~--lpV~~~D 92 (98)
T 1iv0_A 60 PLRTDLKESAQAGKVLPLVEALRAR-G--VEVELWD 92 (98)
T ss_dssp CCCCCSSSCCCSSTTHHHHHHHHHT-T--CEEEEEC
T ss_pred ccCCCCCcCHHHHHHHHHHHHHhcC-C--CCEEEEC
Confidence 8 3333332 24788888887 6 8987654
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=8.5 Score=38.90 Aligned_cols=95 Identities=14% Similarity=0.041 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG--- 144 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g--- 144 (370)
+++++...+..-+.+..+. .+ ..+..+.|++|-.-+......+++..+.. +. ..+.+.|+..||+++-...
T Consensus 115 sp~ei~a~~L~~lk~~ae~~lg---~~v~~~VitVPa~f~~~qr~a~~~A~~~A-Gl-~~~~li~EP~AAAlay~~~~~~ 189 (554)
T 1yuw_A 115 YPEEVSSMVLTKMKEIAEAYLG---KTVTNAVVTVPAYFNDSQRQATKDAGTIA-GL-NVLRIINEPTAAAIAYGLDKKV 189 (554)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS---SCCCEEEEEECTTCCHHHHHHHHHHHHTT-TC-EEEEEEEHHHHHHHHTTCSTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEeCcHHHHHHHHHhhccC
Confidence 3566555554444433222 22 35778899999886665566677766544 42 4688999999988753211
Q ss_pred --CCCeEEEEEcccceeeeecc--CCce
Q 017527 145 --KLHGCVLIAGTGTIAYGFTE--DGRD 168 (370)
Q Consensus 145 --~~~~v~l~~GTGi~g~gii~--dG~l 168 (370)
....+++=+|.|+--..++. +|.+
T Consensus 190 ~~~~~vlV~D~GgGT~Dvsv~~~~~g~~ 217 (554)
T 1yuw_A 190 GAERNVLIFDLGGGTFDVSILTIAAGIF 217 (554)
T ss_dssp SSCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred CCCcEEEEEEcCCCeEEEEEEEEcCCcE
Confidence 13456677888875444444 5654
|
| >3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=92.89 E-value=2.8 Score=37.21 Aligned_cols=96 Identities=16% Similarity=0.120 Sum_probs=69.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|+||.-...+.+++++. ++++.+......++ .+.|..+|++++++++++..++.+|+++.
T Consensus 3 ~iLaIdTS~~~~svAl~~~----------~~~~~~~~~~~~~H--------s~~L~p~i~~~L~~a~~~~~dld~Iav~~ 64 (213)
T 3r6m_A 3 KILAIDTATENCSVALLVN----------DQVISRSEVAPRDH--------TKKVLPMVDEVLKEAGLTLQDLDALAFGR 64 (213)
T ss_dssp CEEEEECSSSEEEEEEESS----------SCEEEEEEECCSCC--------HHHHHHHHHHHHHTTTCCTTTCSEEEEEE
T ss_pred EEEEEEccCcceEEEEEEC----------CEEEEEEEechHHH--------HHHHHHHHHHHHHHcCCCHHHccEEEEec
Confidence 5899999999999999976 78887764322222 35567788999999999999999999886
Q ss_pred cCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 103 pG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
||.+-.. ..-..+-|...++ +|++=.|--.+.+.
T Consensus 65 -GPGsfTglRig~~~AkgLa~~~~--iPl~gVstL~a~a~ 101 (213)
T 3r6m_A 65 -GPGSFTGVRIGIGIAQGLAFGAE--LPMIGVSTLAAMAQ 101 (213)
T ss_dssp -ESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHH
T ss_pred -CCCchhhHHHHHHHHHHHHHHhC--CCEEEEcCHHHHHH
Confidence 5543322 2345667777776 89887776554433
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=92.73 E-value=0.81 Score=43.22 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=82.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCCCcc------ccCHHHHHHHHHHHHHHHH---HHcCCC
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHN------SVGEDAARETIEKVMADAL---LKSGSN 91 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~n~~------~~~~~~~~~~l~~~i~~~l---~~~~~~ 91 (370)
.+.+||+|.+++|+.+++.. ++ +++.+.+.+..--. ..+ ++.++...++++++. +..++
T Consensus 13 ~~a~IDiGSns~rl~I~~~~--------~~~~~~i~~~k~~vrLg~g~~~~g~ls-~eai~r~~~~L~~f~~~~~~~~v- 82 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIK--------DGKLSIILERGRITSLGTKVKETGRLQ-EDRIEETIQVLKEYKKLIDEFKV- 82 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEE--------TTEEEEEEEEEEECCTTTTHHHHSSCC-HHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred EEEEEEECcCcEEEEEEEEc--------CCcEEEEeeeeEEeecCCCccccCCcC-HHHHHHHHHHHHHHHHHHHHCCC-
Confidence 67889999999999999871 23 33444433321000 011 344555556655554 33333
Q ss_pred ccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHH---hh--cCC-CCCeEEEEEcccceeeeeccC
Q 017527 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--TMG-KLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~---g~--~~g-~~~~v~l~~GTGi~g~gii~d 165 (370)
+++ .+++.+.+=+..+...+.+.+++.++ .++.|.+...=|.+ |. ..+ ..+++++=+|.|+--..+..+
T Consensus 83 -~~i--~~vATsA~R~A~N~~~fl~~v~~~~G--~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~ 157 (315)
T 1t6c_A 83 -ERV--KAVATEAIRRAKNAEEFLERVKREVG--LVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKG 157 (315)
T ss_dssp -SEE--EEEECHHHHTSTTHHHHHHHHHHHTC--CCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEET
T ss_pred -CeE--EEEEcHHHHcCcCHHHHHHHHHHHHC--CCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeC
Confidence 223 35677777555677889999999998 78888888764432 22 233 456888999999877666566
Q ss_pred Cce
Q 017527 166 GRD 168 (370)
Q Consensus 166 G~l 168 (370)
+++
T Consensus 158 ~~~ 160 (315)
T 1t6c_A 158 YKV 160 (315)
T ss_dssp TEE
T ss_pred Cce
Confidence 765
|
| >2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9 | Back alignment and structure |
|---|
Probab=92.25 E-value=1.6 Score=38.92 Aligned_cols=97 Identities=8% Similarity=-0.061 Sum_probs=70.3
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++|+||--...+.+++++. ++++ .......... .+.|..+|+++++++++...++.+|+++
T Consensus 12 ~~iLaidTS~~~~sval~~~----------~~~l-~~~~~~~r~H-------se~L~p~i~~~L~~a~~~~~dld~Iav~ 73 (218)
T 2a6a_A 12 HMNVLALDTSQRIRIGLRKG----------EDLF-EISYTGEKKH-------AEILPVVVKKLLDELDLKVKDLDVVGVG 73 (218)
T ss_dssp -CEEEEEECSSSEEEEEEET----------TEEE-EEEEESCGGG-------GGHHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred ceEEEEEcCCcCeEEEEEEC----------CEEE-EEEecchHHH-------HHHHHHHHHHHHHHcCCCHHHCCEEEEE
Confidence 57999999999999999986 6777 4433322221 4667788889999999999999999998
Q ss_pred ecCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 102 VSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 102 vpG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
. ||.+-.. ..-..+-|...++ +|++=.|--.+.+.
T Consensus 74 ~-GPGsfTGlRiG~~~Ak~La~~~~--iPl~gVs~l~a~a~ 111 (218)
T 2a6a_A 74 I-GPGGLTGLRVGIATVVGLVSPYD--IPVAPLNSFEMTAK 111 (218)
T ss_dssp C-CSSCHHHHHHHHHHHHHHHGGGT--CCEEEECHHHHHHH
T ss_pred c-CCCchHhHHHHHHHHHHHHHHcC--CCEEEeCcHHHHHh
Confidence 5 5544322 2345677777777 89998887665544
|
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=91.80 E-value=13 Score=38.08 Aligned_cols=90 Identities=14% Similarity=0.042 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHHHHHHHc-CCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---
Q 017527 69 GEDAARETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG--- 144 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~-~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g--- 144 (370)
+++++...+...+.+..+.. + ..+..+.|++|-.-+......+++..+.. +. ..+.+.|+..||+++-...
T Consensus 111 ~p~ei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qr~a~~~Aa~~A-Gl-~v~~li~EP~AAAlaygl~~~~ 185 (605)
T 4b9q_A 111 APPQISAEVLKKMKKTAEDYLG---EPVTEAVITVPAYFNDAQRQATKDAGRIA-GL-EVKRIINEPTAAALAYGLDKGT 185 (605)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT---SCCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEeCcHHHHHHHhhhhccC
Confidence 45565555444444433322 3 35778899999886655556677766654 32 3678999999988753211
Q ss_pred -CCCeEEEEEcccceeeeec
Q 017527 145 -KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 145 -~~~~v~l~~GTGi~g~gii 163 (370)
....+++=+|.|+.=..++
T Consensus 186 ~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 4b9q_A 186 GNRTIAVYDLGGGAFDISII 205 (605)
T ss_dssp SSEEEEEEEECSSCEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEE
Confidence 1345567788886544443
|
| >3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A | Back alignment and structure |
|---|
Probab=91.35 E-value=2.2 Score=45.29 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=61.3
Q ss_pred CcEEEEEEcC-ccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 21 REVILGLDGG-TTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiG-gT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
...+||+|-| .|.++++++|. +|+++...+.-+..+. ...+...+.|.+++ .++ ++..|+
T Consensus 328 ~~~vlg~dpg~r~g~k~a~vd~---------~G~~l~~~~iy~~~~~-~~~~~~~~~l~~li----~~~-----~~~~Ia 388 (785)
T 3bzc_A 328 PRATLGLDPGLRTGVKVAVVDA---------TGKLLDTATVYPHAPK-NQWDQTLAVLAALC----AKH-----QVELIA 388 (785)
T ss_dssp SCCEEEEECCSSSCEEEEEECT---------TSCEEEEEEECCSGGG-CCHHHHHHHHHHHH----HHH-----TCCEEE
T ss_pred CCeEEEECCCCcCceEEEEECC---------CCCEEEEEEEecCCch-hHHHHHHHHHHHHH----HHc-----CCCEEE
Confidence 4589999999 69999999999 8999988776443332 22344555555544 443 345566
Q ss_pred EeecCCCChhhHHHHHHHHHhhCC-CCceEEEeChHHHHHH
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFP-GNVRLYVHNDALAALA 139 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~-~~~pV~V~NDa~aa~~ 139 (370)
||- |-.+.+...-+.+.+++ ++ ..+|+.+.|++.+-+.
T Consensus 389 IGn-gtasret~~~v~~l~~~-~~~~~i~~v~v~e~gArvy 427 (785)
T 3bzc_A 389 IGN-GTASRETDKLAGELIKK-YPGMKLTKIMVSEAGASVY 427 (785)
T ss_dssp EES-STTHHHHHHHHHHHHHH-CGGGCCEEEEECCHHHHHH
T ss_pred ECC-CccCHHHHHHHHHHHHh-cccCCCCEEEEcCCcCCHH
Confidence 654 43333333334444443 32 1279999999887544
|
| >2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A | Back alignment and structure |
|---|
Probab=91.20 E-value=5.2 Score=35.79 Aligned_cols=96 Identities=16% Similarity=0.066 Sum_probs=66.8
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|+||.-...+.+++++. ++++.+.......+ .+.|..+|++++++++++..++.+|+++.
T Consensus 2 ~iL~idTs~~~~sval~~~----------~~~~~~~~~~~~~h--------~~~l~~~i~~~L~~a~~~~~did~Iav~~ 63 (231)
T 2gel_A 2 RILAIDTATEACSVALWNN----------GTINAHFELCPREH--------TQRILPMVQEILAASGASLNEIDALAFGR 63 (231)
T ss_dssp EEEEEECSSSEEEEEEEET----------TEEEEEEEECCSCC--------HHHHHHHHHHHHHHTTCCGGGCSEEEEEC
T ss_pred eEEEEECCCcCeEEEEEEC----------CEEEEEEhhhhHHH--------HHHHHHHHHHHHHHcCCCHHHCCEEEEEc
Confidence 6899999988899999986 67776443322222 24577888999999999999999999975
Q ss_pred cCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 103 pG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
|+..-.. .....+-|...++ +|++-.|--.+-+.
T Consensus 64 -GPGsftglRig~~~ak~la~~~~--~Pl~~V~~l~a~a~ 100 (231)
T 2gel_A 64 -GPGSFTGVRIGIGIAQGLALGAN--LPMIGVSTLATMAQ 100 (231)
T ss_dssp -CSSCHHHHHHHHHHHHHHHHTTT--CCEEEECHHHHHHH
T ss_pred -CCChhHhHHHHHHHHHHHHHHcC--CCEEEeccHHHHHH
Confidence 5543222 2244566666666 89887776555433
|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.57 Score=48.50 Aligned_cols=71 Identities=24% Similarity=0.292 Sum_probs=51.6
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc-c----------------cCHH----HHHHHHHH
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-S----------------VGED----AARETIEK 79 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~-~----------------~~~~----~~~~~l~~ 79 (370)
..|=|+||||.|.+.+.++|+. +|+++...... |++ . .+.+ .+++.|.+
T Consensus 205 ~~~GlAvDiGTTtv~~~LvdL~--------tG~~l~~~~~~--NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~ 274 (631)
T 3zyy_X 205 RVFGLAIDIGTTTVVVQLVDLV--------SGKVLGTKGNY--NKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINE 274 (631)
T ss_dssp CCEEEEEEECSSEEEEEEEETT--------TCCEEEEEEEE--CGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CceEEEEEecccceeEEEEECC--------CCCEEEeeccc--CCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 4588999999999999999983 79999876543 222 0 1111 24556667
Q ss_pred HHHHHHHHcCCCccCcceEEEe
Q 017527 80 VMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 80 ~i~~~l~~~~~~~~~v~~IgIg 101 (370)
++.++++++++++++|..+.|.
T Consensus 275 li~~l~~~~~i~~~~I~~~~v~ 296 (631)
T 3zyy_X 275 LIFQLCKEHGVEKKEIMAAVVA 296 (631)
T ss_dssp HHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHcCCCHHHeeEEEEE
Confidence 7777778889999988877664
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=91.09 E-value=10 Score=35.78 Aligned_cols=91 Identities=16% Similarity=0.046 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHHHHHH-HcCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---
Q 017527 69 GEDAARETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG--- 144 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~-~~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g--- 144 (370)
+++++...+...+.+..+ ..+ ..+..+.|++|-.-+......+++.++. .+. ..+.+.|+..||+++-...
T Consensus 111 ~~~~i~~~~L~~l~~~a~~~~~---~~~~~~vitvP~~~~~~~r~~~~~a~~~-aGl-~~~~li~Ep~Aaa~~~~~~~~~ 185 (383)
T 1dkg_D 111 APPQISAEVLKKMKKTAEDYLG---EPVTEAVITVPAYFNDAQRQATKDAGRI-AGL-EVKRIINEPTAAALAYGLDKGT 185 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS---SCCCEEEECBCTTCCHHHHHHHHHHHHH-TTC-EESCCCBHHHHHHHHHTCCC-C
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEeccHHHHHHHHHhccCC
Confidence 455555444433333222 222 2456788999997665556677776654 442 3567899999988753221
Q ss_pred -CCCeEEEEEcccceeeeecc
Q 017527 145 -KLHGCVLIAGTGTIAYGFTE 164 (370)
Q Consensus 145 -~~~~v~l~~GTGi~g~gii~ 164 (370)
....+++=+|.|+-=..++.
T Consensus 186 ~~~~~lVvD~Gggttdvsv~~ 206 (383)
T 1dkg_D 186 GNRTIAVYDLGGGTFDISIIE 206 (383)
T ss_dssp CEEEEEEEEECSSCEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEEE
Confidence 12456777888875444444
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=91.01 E-value=2 Score=40.46 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=83.0
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHH---HHcCC
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADAL---LKSGS 90 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l---~~~~~ 90 (370)
|+..+..||+|..++|+.+.+.. +..-+++.+.+.+.. ..... .++.++...++++++. +..++
T Consensus 2 m~~~~A~IDiGSNsirL~I~~~~------~~~~~~i~~~k~~vrLg~g~~~~g~l-s~eai~r~~~~L~~f~~~~~~~~v 74 (315)
T 3mdq_A 2 MSQRIGVIDMGTNTFHLLITDIV------NDRPHTLVNEKSAVGLGKGGITKGFI-TEEAMDRALDTLKKFRVILDEHAV 74 (315)
T ss_dssp --CEEEEEEECSSEEEEEEEEEE------TTEEEEEEEEEEECCSSTTTGGGTCC-CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEecCCcEEEEEEEEc------CCceEEeeeceeeeeccccccccCCc-CHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55678999999999999999861 111234444433321 00012 2344566666665554 44444
Q ss_pred CccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH---HHhh--cCC--CCCeEEEEEcccceeeeec
Q 017527 91 NRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASG--TMG--KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 91 ~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa---~~g~--~~g--~~~~v~l~~GTGi~g~gii 163 (370)
+++. +++.+.+=+..+...+.+.+++.++ .++.|.+...=| .+|. ... ..+.+++=+|.|+--..+.
T Consensus 75 --~~v~--~vATsA~R~A~N~~~fl~~i~~~tG--~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~ 148 (315)
T 3mdq_A 75 --VHVI--ATGTSAVRSGSNKQVLIDRIKKEVN--IDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIG 148 (315)
T ss_dssp --CEEE--EEECHHHHHCTTHHHHHHHHHHHHC--CCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEE
T ss_pred --CEEE--EEeeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEE
Confidence 2333 5666666444566789999999998 788887776533 2222 122 2568899999999776666
Q ss_pred cCCceE
Q 017527 164 EDGRDA 169 (370)
Q Consensus 164 ~dG~l~ 169 (370)
.++++.
T Consensus 149 ~~~~~~ 154 (315)
T 3mdq_A 149 NKNEIL 154 (315)
T ss_dssp CSSCEE
T ss_pred ECCeEe
Confidence 666653
|
| >3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A | Back alignment and structure |
|---|
Probab=90.39 E-value=0.18 Score=49.61 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=77.0
Q ss_pred CCeEEEEEcccceeeeeccCCceEee-CCC----CCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARA-AGA----GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~a-Gg~----G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
.+.|++.+|.|+-- .-+.+|+..-. =++ |.+.+.. .|..++. +.-.+.+..+. +
T Consensus 219 ~~lIv~HLGnGaSi-~Ai~~GksvDTsMG~TpleGl~mgtR------------------sGdiDp~-~l~~l~~~~g~-s 277 (415)
T 3sk3_A 219 LNIITCHLGNGGSV-SAIRNGKCVDTSMGLTPLEGLVMGTR------------------SGDIDPA-IIFHLHDTLGM-S 277 (415)
T ss_dssp CCEEEEECSSSCEE-EEEETTEEEEECCCCCCSCC-------------------------CCCCHH-HHHHHHHHHTC-C
T ss_pred CcEEEEEeCCCceE-EEEECCEEEEeCCCcCCCCCccCCCC------------------CCCCChH-HHHHHHHhcCC-C
Confidence 37899999999844 45589998541 111 2221111 1111111 12222333332 4
Q ss_pred hhhHHHHhccCCC---hHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcc
Q 017527 221 PDELIGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297 (370)
Q Consensus 221 ~~~l~~~~~~~~~---~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~ 297 (370)
.+++...++++.. -..+....++|. .+.+||+.|+.+++-++..+.+.|.++...++ | .-+.||+.||+.
T Consensus 278 ~~ei~~~Lnk~SGLlglsG~S~D~R~le-~~~~gd~~A~lA~d~f~yri~k~IGa~aa~L~--G----~vDaIVFTgGIG 350 (415)
T 3sk3_A 278 VDQINKMLTKESGLLGLTEVTSDCRYVE-DNYATKEDAKRAMDVYCHRLAKYIGSYTALMD--G----RLDAVVFTGGIG 350 (415)
T ss_dssp HHHHHHHC------CCSTTTTCGGGCSS-CCCCCHHHHHHHHHHHHHHHHHHHHHGGGGST--T----CCCEEEEEHHHH
T ss_pred HHHHHHHHhcCcCcccccCCcchHHHHH-HHHcCCHhHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEECCccc
Confidence 4555544442210 001111234443 34479999999999999999999999999985 0 138999999999
Q ss_pred cCcccccchHHHHHHH
Q 017527 298 EANRRWDIGREVVKCI 313 (370)
Q Consensus 298 ~~~~~~~l~~~v~~~l 313 (370)
+..+.+ ++.+.+.+
T Consensus 351 Ens~~v--R~~v~~~l 364 (415)
T 3sk3_A 351 ENAAMV--RELSLGKL 364 (415)
T ss_dssp TTCHHH--HHHHHHTC
T ss_pred cCCHHH--HHHHHhhc
Confidence 875443 44444444
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=87.74 E-value=7.7 Score=38.71 Aligned_cols=90 Identities=14% Similarity=0.006 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC---C
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---G 144 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~---g 144 (370)
+++++...+...+.+..++ .+ ..+..+.|++|-.-+......+++..+. .+. ..+.+.|+..||+++-.. .
T Consensus 85 ~~~ei~a~~L~~l~~~ae~~l~---~~~~~~VitvPa~~~~~qr~a~~~a~~~-AGl-~~~~li~Ep~AAAlay~~~~~~ 159 (509)
T 2v7y_A 85 TPQEISAIILQYLKSYAEDYLG---EPVTRAVITVPAYFNDAQRQATKDAGRI-AGL-EVERIINEPTAAALAYGLDKEE 159 (509)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT---SCCCEEEEEECTTCCHHHHHHHHHHHHH-TTC-EEEEEEEHHHHHHHHTTGGGSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecCHHHHHHHHhhccCC
Confidence 4666655554444333222 22 3467788999998665556667776644 452 357899999998875321 1
Q ss_pred CCCeEEEEEcccceeeeec
Q 017527 145 KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 145 ~~~~v~l~~GTGi~g~gii 163 (370)
....+++=+|.|+-=..++
T Consensus 160 ~~~vlV~D~GgGT~Dvsv~ 178 (509)
T 2v7y_A 160 DQTILVYDLGGGTFDVSIL 178 (509)
T ss_dssp SEEEEEEEECSSCEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEE
Confidence 2345677788887544443
|
| >3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.55 E-value=2.7 Score=45.94 Aligned_cols=101 Identities=10% Similarity=0.091 Sum_probs=58.4
Q ss_pred cEEEEEEcCc-c----ceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 22 EVILGLDGGT-T----STVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 22 ~~vlGVDiGg-T----~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
..++|+|-|- | .++++++|. +|+++...+..+..+.....+...+.| .+++.++ ++.
T Consensus 519 ~~VlaldpG~~~~~~~g~k~a~vd~---------~G~~l~~~~i~~~~~~~~~~~~~~~~l----~~li~~~-----~~~ 580 (1030)
T 3psf_A 519 PKILSLTCGQGRFGADAIIAVYVNR---------KGDFIRDYKIVDNPFDKTNPEKFEDTL----DNIIQSC-----QPN 580 (1030)
T ss_dssp CCEEEEECTTCCTTTSCEEEEEECT---------TSCEEEEEEECSCTTCSSCCHHHHHHH----HHHHHHH-----CCS
T ss_pred CeEEEecCCCCCCCCCCeEEEEECC---------CCCEEEEEEEcCCCCChhhHHHHHHHH----HHHHHHc-----CCc
Confidence 4799999983 2 799999999 899999887632111111233334444 4445444 355
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhh-C----CCCceEEEeChHHHHHHh
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDI-F----PGNVRLYVHNDALAALAS 140 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~-f----~~~~pV~V~NDa~aa~~g 140 (370)
.|+||-.......-...+.+.+.+. + ...++|.+.|++-|.+.+
T Consensus 581 ~IaIGn~s~et~~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~gAsvYs 629 (1030)
T 3psf_A 581 AIGINGPNPKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ 629 (1030)
T ss_dssp EEEECCSSTHHHHHHHHHHHHHHHTTCBCTTSCBCCEEECCCTTHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHhhccccccCCCccEEEecchHHHHHH
Confidence 6677642221111112455555542 1 113789999999886653
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=34 Score=35.44 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh-c-C--
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-- 143 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~-~-~-- 143 (370)
+++++...+..-+.+.... .+ ..+..+.|++|..-+......+++..+.. +. ..+.+.|+..||+++- . .
T Consensus 114 speei~a~~L~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~~~~li~EP~AAAlaygl~~~~ 188 (675)
T 3d2f_A 114 SATQLAAMFIDKVKDTVKQDTK---ANITDVCIAVPPWYTEEQRYNIADAARIA-GL-NPVRIVNDVTAAGVSYGIFKTD 188 (675)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHC---SCCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHHHHHHCSC
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEEcchHHHHHHHhhhccc
Confidence 4666655555444443322 23 35678899999886665556677766554 42 4688999999987753 1 1
Q ss_pred -----C-CCCeEEEEEcccceeeeecc--CCce
Q 017527 144 -----G-KLHGCVLIAGTGTIAYGFTE--DGRD 168 (370)
Q Consensus 144 -----g-~~~~v~l~~GTGi~g~gii~--dG~l 168 (370)
. ....+++=+|.|+--..++. +|.+
T Consensus 189 ~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~ 221 (675)
T 3d2f_A 189 LPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQL 221 (675)
T ss_dssp CCCSSSCCEEEEEEEECSSCEEEEEEEEETTEE
T ss_pred cccccCCCcEEEEEEcCCCcEEEEEEEecCCeE
Confidence 1 12456677888875544443 5654
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=85.48 E-value=8.4 Score=38.63 Aligned_cols=135 Identities=11% Similarity=0.058 Sum_probs=83.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC--Cc----cccCHHHHHHHHHHHHHHH---HHHcCCC
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--NH----NSVGEDAARETIEKVMADA---LLKSGSN 91 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~--n~----~~~~~~~~~~~l~~~i~~~---l~~~~~~ 91 (370)
...+-.||+|..++++.+++.. ++...++.+.+.... .. ... .++.++...++++++ ++..++
T Consensus 14 ~~~~AaIDiGSNS~rL~I~~~~------~~~~~~~~~~k~~vrLg~gl~~~g~L-s~eai~r~~~~L~~F~~~~~~~~v- 85 (508)
T 3hi0_A 14 LAPVSVIDIGSNSVRLVVYEGL------SRAPAVLFNEKVLCGLGKGLALTGRM-HEEGVTRALMALRRFHVLSEQAQA- 85 (508)
T ss_dssp CCCEEEEEECSSEEEEEEESCS------SSSCCEEEEEEEECCTTTTHHHHSSC-CHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCeEEEEEECCccEEEEEEEEc------CCCceEEEEEeEEeecccCccccCCc-CHHHHHHHHHHHHHHHHHHHhCCC-
Confidence 3578999999999999999871 112345555433221 00 001 234566666666665 444444
Q ss_pred ccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH---HHhhc--CCCCCeEEEEEcccceeeeeccCC
Q 017527 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASGT--MGKLHGCVLIAGTGTIAYGFTEDG 166 (370)
Q Consensus 92 ~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa---~~g~~--~g~~~~v~l~~GTGi~g~gii~dG 166 (370)
+++. .++.+.+=+..+...+.+.+++.++ .||.|.+--.=| .+|.. ....+++++=+|.|+--..+..++
T Consensus 86 -~~v~--~vATsA~R~A~N~~~fl~~i~~~tG--~~ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~~ 160 (508)
T 3hi0_A 86 -QKLY--VLATAAAREAENGPDFIREAEAILG--CEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDK 160 (508)
T ss_dssp -SEEE--EEECTHHHHSTTHHHHHHHHHHHHT--SCEEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEETT
T ss_pred -CeEE--EEeeHHHHcCcCHHHHHHHHHHHHC--CCeEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeCC
Confidence 2343 5666666444566789999999998 788887766533 22322 333567888899998766555566
Q ss_pred ce
Q 017527 167 RD 168 (370)
Q Consensus 167 ~l 168 (370)
++
T Consensus 161 ~~ 162 (508)
T 3hi0_A 161 SC 162 (508)
T ss_dssp EE
T ss_pred ee
Confidence 54
|
| >3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.47 E-value=3.2 Score=46.11 Aligned_cols=101 Identities=10% Similarity=0.101 Sum_probs=58.4
Q ss_pred cEEEEEEcCc-----cceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 22 EVILGLDGGT-----TSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 22 ~~vlGVDiGg-----T~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
..++|+|-|- |.++++++|. +|+++...+..+..+.....+...+.|. +++.++ ++.
T Consensus 516 ~~VlaldpG~r~~g~~g~k~a~vD~---------~G~vl~~~~i~~~~~~~~~~~~a~~~l~----~li~~~-----~~~ 577 (1219)
T 3psi_A 516 PKILSLTCGQGRFGADAIIAVYVNR---------KGDFIRDYKIVDNPFDKTNPEKFEDTLD----NIIQSC-----QPN 577 (1219)
T ss_dssp CCEEEEECTTCCTTTTCEEEEEECT---------TSCEEEEEEECSCTTCSSCSHHHHHHHH----HHHHHH-----CCS
T ss_pred CeEEEecCCCCCCCCCceEEEEECC---------CCCEEEEEEEcCCCCChhhHHHHHHHHH----HHHHHc-----CCc
Confidence 4799999983 2799999999 8999998877321101112333344444 445443 355
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhh-C----CCCceEEEeChHHHHHHh
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDI-F----PGNVRLYVHNDALAALAS 140 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~-f----~~~~pV~V~NDa~aa~~g 140 (370)
.|+||-.......-...+.+.+++. + ...++|.+.||+-|.+.+
T Consensus 578 vIaIGn~sret~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~gAsvYs 626 (1219)
T 3psi_A 578 AIGINGPNPKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDEVAIRYQ 626 (1219)
T ss_dssp EEEECCSSTHHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCTTHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHHHHhhccccccCCCccEEEECchHHHHHh
Confidence 6677642211111112455555542 1 113789999999887653
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.98 E-value=5.8 Score=40.66 Aligned_cols=90 Identities=16% Similarity=0.048 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC---
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMG--- 144 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g--- 144 (370)
+++++...+...+.+..+. .+ ..+..+.|++|-.-+......+++..+.. +. ..+.+.|+..||+++-...
T Consensus 111 ~~~ei~a~~L~~l~~~ae~~l~---~~v~~~VitVPa~f~d~qr~a~~~A~~~A-Gl-~v~~li~EP~AAAlay~l~~~~ 185 (605)
T 2kho_A 111 APPQISAEVLKKMKKTAEDYLG---EPVTEAVITVPAYFNDAQRQATKDAGRIA-GL-EVKRIINEPTAAALAYGLDKGT 185 (605)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---SCCCEEEEEECTTCCHHHHHHHHHHHHTT-TC-EEEEEEEHHHHHHHHTTTTSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEecCHHHHHHHhhhcccC
Confidence 4666555544444333322 22 34677889999976655556677766544 42 4688999999998853221
Q ss_pred -CCCeEEEEEcccceeeeec
Q 017527 145 -KLHGCVLIAGTGTIAYGFT 163 (370)
Q Consensus 145 -~~~~v~l~~GTGi~g~gii 163 (370)
....+++=+|.|+-=..++
T Consensus 186 ~~~~vlV~DlGGGT~Dvsi~ 205 (605)
T 2kho_A 186 GNRTIAVYDLGGGTFDISII 205 (605)
T ss_dssp SEEEEEEEEECSSCEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEE
Confidence 1235667788887544444
|
| >3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.04 E-value=1.4 Score=42.02 Aligned_cols=34 Identities=21% Similarity=0.055 Sum_probs=27.0
Q ss_pred CCCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEec
Q 017527 19 GGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (370)
Q Consensus 19 ~~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~ 61 (370)
.|..+.|+||-|.|++|+-+++. +|+++.+.+.+
T Consensus 4 ~~~~~~IavDWGTSnlRa~l~~~---------~g~vl~~~~~~ 37 (330)
T 3t69_A 4 TTAGYYAAVDWGTSSFRLWIIGE---------DGAVLAERRSA 37 (330)
T ss_dssp ----CEEEEEECSSCEEEEEECT---------TSCEEEEEEES
T ss_pred CCCCCEEEEEecchheehheecC---------CCCchhhhcCC
Confidence 44568999999999999999998 79999987654
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=83.92 E-value=2 Score=43.70 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=41.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN 91 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~ 91 (370)
.++.|+|||.|+|.+++.+. .+++-+++.....++.-.. +.-.=+..+.+.+++++++++..
T Consensus 2 ~~i~GiDIGnsttev~l~~~------~~g~i~~l~~g~~~ttGiK--Gt~~Ni~g~~~si~~a~~~a~~~ 63 (607)
T 1nbw_A 2 PLIAGIDIGNATTEVALASD------YPQARAFVASGIVATTGMK--GTRDNIAGTLAALEQALAKTPWS 63 (607)
T ss_dssp CEEEEEEECSSEEEEEEEEC------BTTBCCCCEEEEEECCSST--TSGGGHHHHHHHHHHHHTTSSCC
T ss_pred cEEEEEEecCceEEEEEEEE------cCCeEEEEEeecccCCccc--eeeeCHHHHHHHHHHHHHHhCCc
Confidence 58999999999999998876 1123477888877765442 32223445556667777666655
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=14 Score=37.08 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=85.1
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcC-CCccC
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSG-SNRSA 94 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~-~~~~~ 94 (370)
..+..||+|..++|+.+++.. ++.-+++.+.+.+.. ..... .++.++...++++++.+... ...++
T Consensus 11 ~~~AaIDiGSNSirL~I~~~~------~~~~~~l~~~k~~vrLg~g~~~~g~L-s~eai~r~~~~L~~f~~~~~~~~v~~ 83 (513)
T 1u6z_A 11 QEFAAVDLGSNSFHMVIARVV------DGAMQIIGRLKQRVHLADGLGPDNML-SEEAMTRGLNCLSLFAERLQGFSPAS 83 (513)
T ss_dssp -CEEEEEECSSCEEEEEEEEE------TTEEEEEEEEEECCCTGGGBCTTCCB-CHHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CeEEEEEeccccEEEEEEEEc------CCeeEEEEeeEEEEeccCcccccCCc-CHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence 368999999999999999861 001234444444321 00112 24667778888888876653 22233
Q ss_pred cceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH---HHhh--cCC-CCCeEEEEEcccceeeeeccCCce
Q 017527 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASG--TMG-KLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 95 v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa---~~g~--~~g-~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
+ ..++.+.+=+..+...+.+.+++.++ .+|.|.+-..=| .+|. ... ..+++++=+|.|+--..+..++++
T Consensus 84 v--~~vATsA~R~A~N~~~fl~~i~~~tG--~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~~~~~ 159 (513)
T 1u6z_A 84 V--CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEP 159 (513)
T ss_dssp E--EEEECHHHHHCTTHHHHHHHHTTTCS--SCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEETTEE
T ss_pred E--EEEecHHHHcCcCHHHHHHHHHHHHC--CCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEeCCee
Confidence 3 35666666444566789999999998 888888776533 2232 122 236889999999866655455654
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=82.17 E-value=13 Score=35.27 Aligned_cols=134 Identities=16% Similarity=0.082 Sum_probs=79.5
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCcc------ccCHHHHHHHHHHHHHHHHHHcCCCccCc
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN------SVGEDAARETIEKVMADALLKSGSNRSAV 95 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~------~~~~~~~~~~l~~~i~~~l~~~~~~~~~v 95 (370)
..+..||+|..++|+.+.+..+ ++.-+++.+.+.+..--. .. .++.++...++++++.+.... ..+
T Consensus 16 ~~~A~IDiGSNsiRL~I~~~~~-----~~~~~~i~~~k~~vrLg~g~~~~g~l-s~eai~r~~~aL~~f~~~~~~--~~v 87 (343)
T 3cer_A 16 VTVAGIDCGTNSIRLKIARVDA-----DGMHEVVPRILRVIRLGQDVDKTHRF-ADEALERAYVAAREFAGVIAE--HPI 87 (343)
T ss_dssp EEEEEEEECSSCEEEEEEEEET-----TEEEEEEEEEEECCCTTTTHHHHSSC-CHHHHHHHHHHHHHHHHHHTT--SCC
T ss_pred CeEEEEEcccceeEeEEEEEcC-----CCCEEEEEEEEEEeeCCCCccccCCc-CHHHHHHHHHHHHHHHHHHHH--CCC
Confidence 3688999999999999998610 001123444433321000 01 235677777777777655432 112
Q ss_pred c-eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH---HHhh--cCC----CCCeEEEEEcccceeeeeccC
Q 017527 96 R-AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA---LASG--TMG----KLHGCVLIAGTGTIAYGFTED 165 (370)
Q Consensus 96 ~-~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa---~~g~--~~g----~~~~v~l~~GTGi~g~gii~d 165 (370)
. -..++.+.+=+..+...+.+.+++.++ .++.|.+-..=| .+|. ..+ ..+.+++=+|.|+--..+..+
T Consensus 88 ~~v~~vATsA~R~A~N~~~fl~~v~~~tG--i~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~ 165 (343)
T 3cer_A 88 DGLRFVATSATRDAENREEFEDEIERILG--VRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGD 165 (343)
T ss_dssp SEEEEEECHHHHHCTTHHHHHHHHHHHHS--SCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCC
T ss_pred CeEEEEecHHHHcCcCHHHHHHHHHHHHC--CCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeec
Confidence 2 345667666444566789999999998 777777665433 3332 222 246888999999866544433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 370 | ||||
| d2ch5a1 | 227 | c.55.1.5 (A:118-344) N-acetylglucosamine kinase, N | 4e-33 | |
| d1zc6a2 | 171 | c.55.1.5 (A:122-292) Probable N-acetylglucosamine | 2e-31 | |
| d1zxoa2 | 174 | c.55.1.5 (A:107-280) Hypothetical protein BT3618 { | 5e-22 | |
| d1zbsa1 | 176 | c.55.1.5 (A:108-283) Hypothetical protein PG1100 { | 7e-22 | |
| d2ch5a2 | 117 | c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAG | 8e-18 | |
| d1zbsa2 | 107 | c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Po | 8e-12 | |
| d1zc6a1 | 114 | c.55.1.5 (A:8-121) Probable N-acetylglucosamine ki | 3e-08 |
| >d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Score = 121 bits (303), Expect = 4e-33
Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 10/189 (5%)
Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
G VLI+GTG+ DG ++ G G ++GD GS Y IA QA+ V + D
Sbjct: 3 GVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPH 62
Query: 208 LTS----NILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSV 263
+ ++ ++ Y D R A + A+ GD ++ I + +
Sbjct: 63 DIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAG 122
Query: 264 EELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANR------RWDIGREVVKCILRDY 317
E L + AV+ + GK P++ VG V ++ + + +
Sbjct: 123 EMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFF 182
Query: 318 PGAVPIRPK 326
++ +
Sbjct: 183 SSFTLMKLR 191
|
| >d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Score = 115 bits (288), Expect = 2e-31
Identities = 42/156 (26%), Positives = 67/156 (42%), Gaps = 12/156 (7%)
Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
G ++ GTG+I DG A G G GD SG + +A A DGR +
Sbjct: 3 GIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGRHSHSP 62
Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
LT +L + ++ W A+ A L P+V+S A D A+ +L+ + E+
Sbjct: 63 LTRAVLDFVGG-DWQAMMAWNGRAT-PAQFARLAPLVLSAAR-VDPEADALLRQAGEDAW 119
Query: 268 LSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW 303
+A+ D + P+ + GG+ +A R W
Sbjct: 120 AIARAL---------DPQDELPVALCGGLGQALRDW 146
|
| >d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein BT3618 species: Bacteroides thetaiotaomicron [TaxId: 818]
Score = 89.6 bits (222), Expect = 5e-22
Identities = 23/164 (14%), Positives = 50/164 (30%), Gaps = 17/164 (10%)
Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
G I GTG+ + + + + G ILGD GSG + +
Sbjct: 3 GIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLV----GDILKNQLPAT 58
Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
L L +L+ P+ + +A+L P + + +++ +S
Sbjct: 59 LKEEFLKQFDLTPPEIIDRVYRQPFPNRFLASLSPFI--AQHLEEPAIRQLVMNSFIAFF 116
Query: 268 LSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVK 311
+P+ +G + + ++ +
Sbjct: 117 RRNVMQ---------YDYKQYPVHFIGSIAYCYKEIL--QDAAR 149
|
| >d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Score = 89.3 bits (221), Expect = 7e-22
Identities = 31/180 (17%), Positives = 51/180 (28%), Gaps = 21/180 (11%)
Query: 148 GCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTM 207
G I GTG+ + F A + G ILGD GSG + + +
Sbjct: 4 GIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFI----GSLLKGQMPEG 59
Query: 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELA 267
L L L+S D + Y P + ++Q+S ++
Sbjct: 60 LCEAFLQEYGLTSADIIE-SVYRKP-FPNRFLAGFSPFIAQHLDIPAVYSLVQNSFDDFL 117
Query: 268 LSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRW------DIGREVVKCILRDYPGAV 321
+ + PL +G V R G + + G +
Sbjct: 118 VRNVL---------RYNRPDLPLHFIGSVAFHYREVLSSVIKKRGLTLGSVLQSPMEGLI 168
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.3 bits (187), Expect = 8e-18
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%)
Query: 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVM 81
+ G++GG T + + + + +LA A +NH +G D E I +++
Sbjct: 3 AIYGGVEGGGTRSEVLL---------VSEDGKILAEADGLSTNHWLIGTDKCVERINEMV 53
Query: 82 ADALLKSGSNRSA-VRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALA 139
A K+G + +R++ L++SG + + ++ LRD FP + + DA ++A
Sbjct: 54 NRAKRKAGVDPLVPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIA 113
Query: 140 SGT 142
+ T
Sbjct: 114 TAT 116
|
| >d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} Length = 107 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Score = 59.2 bits (143), Expect = 8e-12
Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
IL D G+T T L R N + + +
Sbjct: 2 ILIGDSGSTKTDWCIA----------KEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLP 51
Query: 84 ALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140
A+ + S++RAV +G P + L + P R+ V D L A +
Sbjct: 52 AIGQ---KASSIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARA 104
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Score = 48.9 bits (116), Expect = 3e-08
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 16/118 (13%)
Query: 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83
++G+DGG T T + + + LA A G S + + + + +
Sbjct: 6 LIGVDGGGTGTRIR---LHASDGT------PLAMAEGGASALSQGIAK-SWQAVLSTLEA 55
Query: 84 ALLKSGSNRSAVRA--VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA 139
A ++G + A + L +SGV++ + PG RL + D L
Sbjct: 56 AFQQAGLPAAPASACAIGLGLSGVHNRQWAGEFESQA----PGFARLSLATDGYTTLL 109
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 370 | |||
| d2ch5a1 | 227 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 99.96 | |
| d1zc6a2 | 171 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 99.92 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1zbsa1 | 176 | Hypothetical protein PG1100 {Porphyromonas gingiva | 99.82 | |
| d1z05a2 | 197 | Transcriptional regulator VC2007 {Vibrio cholerae | 99.8 | |
| d1zxoa2 | 174 | Hypothetical protein BT3618 {Bacteroides thetaiota | 99.78 | |
| d2ap1a2 | 117 | Putative regulator protein YcfX {Salmonella typhim | 99.78 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 99.78 | |
| d2gupa2 | 175 | Hypothetical protein SP2142 {Streptococcus pneumon | 99.77 | |
| d1z6ra3 | 196 | Mlc protein {Escherichia coli [TaxId: 562]} | 99.76 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 99.75 | |
| d2hoea3 | 128 | N-acetylglucosamine kinase {Thermotoga maritima [T | 99.75 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 99.75 | |
| d2ap1a1 | 186 | Putative regulator protein YcfX {Salmonella typhim | 99.75 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 99.75 | |
| d2aa4a1 | 119 | N-acetylmannosamine kinase NanK {Escherichia coli | 99.71 | |
| d1z05a3 | 128 | Transcriptional regulator VC2007 {Vibrio cholerae | 99.7 | |
| d1woqa1 | 129 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 99.69 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 99.68 | |
| d1xc3a2 | 176 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 99.66 | |
| d1xc3a1 | 118 | Putative fructokinase YhdR {Bacillus subtilis [Tax | 99.65 | |
| d2gupa1 | 114 | Hypothetical protein SP2142 {Streptococcus pneumon | 99.65 | |
| d1z6ra2 | 129 | Mlc protein {Escherichia coli [TaxId: 562]} | 99.64 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 99.58 | |
| d1woqa2 | 124 | Inorganic polyphosphate/ATP-glucomannokinase PPGMK | 99.43 | |
| d1q18a1 | 110 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 99.42 | |
| d1zbsa2 | 107 | Hypothetical protein PG1100 {Porphyromonas gingiva | 99.41 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 98.07 | |
| d1zxoa1 | 104 | Hypothetical protein BT3618 {Bacteroides thetaiota | 97.81 | |
| d1bdga1 | 208 | Hexokinase {Blood fluke (Schistosoma mansoni) [Tax | 97.8 | |
| d1v4sa1 | 205 | Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | 97.77 | |
| d1czan3 | 205 | Mammalian type I hexokinase {Human (Homo sapiens) | 97.76 | |
| d1czan1 | 207 | Mammalian type I hexokinase {Human (Homo sapiens) | 97.68 | |
| d1ig8a1 | 207 | Hexokinase {Baker's yeast (Saccharomyces cerevisia | 97.47 | |
| d1r59o1 | 252 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 97.43 | |
| d3bzka5 | 149 | Transcriptional accessory factor Tex {Pseudomonas | 97.16 | |
| d1g99a2 | 201 | Acetate kinase {Archaeon Methanosarcina thermophil | 97.0 | |
| d2e1za2 | 205 | Propionate kinase {Salmonella typhimurium [TaxId: | 96.79 | |
| d1saza2 | 203 | butyrate kinase 2 {Thermotoga maritima [TaxId: 233 | 96.76 | |
| d3bexa1 | 118 | Type III pantothenate kinase, CoaX {Thermotoga mar | 95.2 | |
| d1nu0a_ | 138 | Hypothetical protein YqgF (RuvX) {Escherichia coli | 94.75 | |
| d1v4sa2 | 243 | Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1okja1 | 106 | Hypothetical protein YeaZ {Escherichia coli [TaxId | 94.49 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 93.79 | |
| d1vhxa_ | 140 | Hypothetical protein YrrK (RuvX) {Bacillus subtili | 93.57 | |
| d1czan4 | 243 | Mammalian type I hexokinase {Human (Homo sapiens) | 93.09 | |
| d1czan2 | 243 | Mammalian type I hexokinase {Human (Homo sapiens) | 93.0 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 92.6 | |
| d2f9wa2 | 114 | Type III pantothenate kinase, CoaX {Pseudomonas ae | 92.41 | |
| d1nbwa2 | 239 | ATPase domain of the glycerol dehydratase reactiva | 91.42 | |
| d2d0oa2 | 241 | Diol dehydratase-reactivating factor large subunit | 90.56 | |
| d1ig8a2 | 262 | Hexokinase {Baker's yeast (Saccharomyces cerevisia | 89.93 | |
| d1bdga2 | 237 | Hexokinase {Blood fluke (Schistosoma mansoni) [Tax | 89.83 | |
| d1iv0a_ | 98 | Hypothetical protein, YqgF homologue {Thermus ther | 89.34 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 87.9 | |
| d2a6aa1 | 103 | Hypothetical protein TM0874 {Thermotoga maritima [ | 85.86 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 83.5 | |
| d1t6ca1 | 126 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 83.15 | |
| d1u6za2 | 124 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 82.47 | |
| d1saza1 | 172 | butyrate kinase 2 {Thermotoga maritima [TaxId: 233 | 81.15 |
| >d2ch5a1 c.55.1.5 (A:118-344) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.6e-29 Score=230.97 Aligned_cols=198 Identities=22% Similarity=0.275 Sum_probs=163.0
Q ss_pred CCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCc----hhHHHHHHHcCCCCh
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT----MLTSNILSTLELSSP 221 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~----~l~~~~~~~~~~~s~ 221 (370)
+.+|++++|||++++|+..||+..|+|||||++||+||++|||+++++.+.+..||+.+.+ .+.+.+.++++..+.
T Consensus 1 ~~Givvi~GTGsi~~g~~~~G~~~r~GGwG~~lGD~Gsg~~iG~~al~~~~~~~DG~~~~~~~~~~l~~~~~~~~~~~~~ 80 (227)
T d2ch5a1 1 DGGVVLISGTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVKQAMFHYFQVPDR 80 (227)
T ss_dssp SCEEEEEESSSEEEEEECTTSCEEEEECCCTTTCCTTSHHHHHHHHHHHHHHHHHTSSCCSSCCHHHHHHHHHHHTCSSH
T ss_pred CCCEEEEccCChhhEEEeCCCCEEecCCccccCCCCCcHhHHHHHHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCCCH
Confidence 3689999999998999999999999999999999999999999999999999999998776 467778888887777
Q ss_pred hhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcc
Q 017527 222 DELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANR 301 (370)
Q Consensus 222 ~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~ 301 (370)
.+++.+.|....+.+++.+++.|+++|++||+.|++|+++++++|++.+.++++.+||.....+++.+|+++||++++.+
T Consensus 81 ~~~~~~~~~~~~~~~iA~la~~V~~aA~~GD~~A~~Il~~aa~~La~~i~~~~~~l~~~~~~~~~~~~Vvl~Ggv~~~~~ 160 (227)
T d2ch5a1 81 LGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRHIVAVLPEIDPVLFQGKIGLPILCVGSVWKSWE 160 (227)
T ss_dssp HHHHTTTTTTCCHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHGGGSCGGGGCSTTCEEEEEESGGGGGHH
T ss_pred HHHHHHHHhcccHHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccccCCCeEEechHhhcch
Confidence 77787777666677888999999999999999999999999999999999999999975544555667999999999987
Q ss_pred cccchHHHHHHHHhhCCCceeeCCCCCcccccccccccccccccceeE
Q 017527 302 RWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALC 349 (370)
Q Consensus 302 ~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 349 (370)
.+ ++++++.|.++.+...-. ...... +....+.+.+||+.|+
T Consensus 161 ~l--~~~~~~~L~~~~~~~~~~--~~~~~~--~~~~~~~p~~GAa~LA 202 (227)
T d2ch5a1 161 LL--KEGFLLALTQGREIQAQN--FFSSFT--LMKLRHSSALGGASLG 202 (227)
T ss_dssp HH--HHHHHHHHHHHC---CCC--SCSEEE--EEEESSCTHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcchhhcc--cCCeeE--eecCCCccHHHHHHHH
Confidence 76 999999998876433211 111111 2233445588998887
|
| >d1zc6a2 c.55.1.5 (A:122-292) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=99.92 E-value=1.7e-24 Score=189.09 Aligned_cols=153 Identities=27% Similarity=0.378 Sum_probs=130.5
Q ss_pred CCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
++++++++|||++++++..+|+..|+|||||++||+||++|||+++++.+++..||+.+.++|.+.++++++. +...++
T Consensus 1 ~pGivviaGTGSi~~~~~~~g~~~r~GGwG~~lGD~GSg~wiG~~al~~~l~~~Dg~~~~t~L~~~~~~~~~~-~~~~~~ 79 (171)
T d1zc6a2 1 QPGIIVALGTGSIGEALYPDGSHREAGGWGYPSGDEASGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVGG-DWQAMM 79 (171)
T ss_dssp SSEEEEEESSSEEEEEECTTSCEEEESCCCTTTSCTTSHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHTS-SHHHHH
T ss_pred CCeEEEEecCCceeEEECCCCCEEEcCCCCcccCCCccHHHHHHHHHHHHHHHHHCCCCCcHHHHHHHHhcCC-CHHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999985 566777
Q ss_pred HHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccc
Q 017527 226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDI 305 (370)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l 305 (370)
.+.+. ..+.+++.+++.|+++| +||+.|++|+++++.+|+..+..+.. .++.+|++.||++.....+ +
T Consensus 80 ~~~~~-~~~~~iA~la~~V~~aa-~gD~~A~~Il~~a~~~l~~~~~~~~~---------~~~~~v~l~Ggl~~~~~~~-l 147 (171)
T d1zc6a2 80 AWNGR-ATPAQFARLAPLVLSAA-RVDPEADALLRQAGEDAWAIARALDP---------QDELPVALCGGLGQALRDW-L 147 (171)
T ss_dssp HHHHT-CCHHHHHTTHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHHHCT---------TCCSCEEEESHHHHHTGGG-S
T ss_pred HHHhc-CCHHHHHHhhHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHhcc---------cCCceEEEECchHHHHHHH-H
Confidence 77663 45778899999999876 69999999999999999988655432 2357899999998776555 4
Q ss_pred hHHHHH
Q 017527 306 GREVVK 311 (370)
Q Consensus 306 ~~~v~~ 311 (370)
.+.+..
T Consensus 148 ~~~~~~ 153 (171)
T d1zc6a2 148 PPGFRQ 153 (171)
T ss_dssp CHHHHH
T ss_pred HHHHHh
Confidence 444443
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=6.1e-23 Score=193.80 Aligned_cols=282 Identities=12% Similarity=-0.034 Sum_probs=169.1
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCC-eEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~-il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
+|.|++||||||+|++++|. ++. +....+.++.+. +++.++|++++++.+ .++.+|||
T Consensus 1 ~y~L~~DIGGT~ir~glvd~---------~~~~i~~~~~~~~~~~---------~~~~~~i~~~~~~~~---~~~~~igI 59 (319)
T d1sz2a1 1 KYALVGDVGGTNARLALCDI---------ASGEISQAKTYSGLDY---------PSLEAVIRVYLEEHK---VEVKDGCI 59 (319)
T ss_dssp CEEEEEEEETTEEEEEEEET---------TTCCEEEEEEEEGGGC---------SCHHHHHHHHHHHSC---CCCCEEEE
T ss_pred CEEEEEEEChhheeeEEEEC---------CCCEEEEEEEeCCCCH---------hHHHHHHHHHHHhcC---CCcceEEE
Confidence 48999999999999999997 444 444444444332 224556666777665 36899999
Q ss_pred eecCCCChhh--------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-------------CCCCCeEEEEEccccee
Q 017527 101 AVSGVNHPTD--------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-------------MGKLHGCVLIAGTGTIA 159 (370)
Q Consensus 101 gvpG~~~~~~--------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-------------~g~~~~v~l~~GTGi~g 159 (370)
|+||++++.. ..+....++..+. .+|.+.||.+++...+. .+..+.+++++|||++
T Consensus 60 ~~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~g~G- 136 (319)
T d1sz2a1 60 AIACPITGDWVAMTNHTWAFSIAEMKKNLGF--SHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTG- 136 (319)
T ss_dssp EESSCCCSSEECCSSSCCCEEHHHHHHHHTC--SEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSS-
T ss_pred EcccCCCCCcccccccccccChHHHHHhhcc--cceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEEEccccc-
Confidence 9999987542 2245666776665 79999999998866431 2345677777777763
Q ss_pred eeeccCCc-----eEeeCCCCCCcCCCCchHHH-HHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhc----
Q 017527 160 YGFTEDGR-----DARAAGAGPILGDWGSGYGI-AAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---- 229 (370)
Q Consensus 160 ~gii~dG~-----l~~aGg~G~llgd~Gs~~~i-G~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~---- 229 (370)
.|+..+++ ...+||+||+..+....... ....+. ..+.. . + .|.+. |...+...+.
T Consensus 137 ~g~~~~~~~~~g~~~~agE~G~~~~~~~~~~~~~~~~~~~-----~~g~~-g-~-----~E~~~--Sg~~l~~~~~~~~~ 202 (319)
T d1sz2a1 137 LGVAHLVHVDKRWVSLPGEGGHVDFAPNSEEEAIILEILR-----AEIGH-V-S-----AERVL--SGPGLVNLYRAIVK 202 (319)
T ss_dssp EEEEEEEEETTEEEEEECCGGGSBCCCCSHHHHHHHHHHH-----HHSSS-C-B-----GGGTS--SHHHHHHHHHHHHH
T ss_pred ceEEEEecccCCcccccccccccccCCcchhhccchhhhh-----hcCCc-c-e-----eeeec--cchhHHHHHHHHHh
Confidence 34555554 46699999987655432221 111110 00100 0 0 11111 1112111100
Q ss_pred cCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH-H
Q 017527 230 VDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR-E 308 (370)
Q Consensus 230 ~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~-~ 308 (370)
..............+.+.+.++|+.|.++++++..++...+..++..+.+ |+.+|++||++.....+ +.. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ivigGG~~~~~~~~-~~~~~ 274 (319)
T d1sz2a1 203 ADNRLPENLKPKDITERALADSCTDCRRALSLFCVIMGRFGGNLALNLGT-------FGGVFIAGGIVPRFLEF-FKASG 274 (319)
T ss_dssp HTTCCCCCCCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTC-------TTEEEEECSSSGGGHHH-HHHSS
T ss_pred hcCCCchhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhheecC-------CCCcEEecchhhhhhhh-hchHH
Confidence 00000000011234455677899999999999999999999998888885 78899999998876444 232 3
Q ss_pred HHHHHHhhCCCceeeCCCCCcccccccccccccccccceeEeeec
Q 017527 309 VVKCILRDYPGAVPIRPKVCIWPHWHSCDQASANCCGAALCRIQL 353 (370)
Q Consensus 309 v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (370)
+++.+.+...... .++...+..+..++++++|||+++..++
T Consensus 275 ~~~~~~~~~~~~~----~~~~~~v~~~~~~dagl~GAa~~a~~~l 315 (319)
T d1sz2a1 275 FRAAFEDKGRFKE----YVHDIPVYLIVHDNPGLLGSGAHLRQTL 315 (319)
T ss_dssp HHHHHHCCGGGHH----HHTTCCEEEECCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchhh----HhhCCcEEEEECCchhHHHHHHHHHHhh
Confidence 4555543211111 1223333444456688999999874433
|
| >d1zbsa1 c.55.1.5 (A:108-283) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Probab=99.82 E-value=1.2e-20 Score=165.13 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=121.6
Q ss_pred CCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
++++++++|||++++++..+|+..|+|||||++||+|||+|||+++++++.+ ..+.++|.+.++++|+.++. ..+
T Consensus 2 ~~Gi~~i~GTGSi~~~~~~~g~~~r~gGwG~llGDeGSG~wiG~~al~~~~~----~~~~~~L~~~~~~~~~~~~~-~~i 76 (176)
T d1zbsa1 2 SEGIACILGTGSNSCLFDGREIKANVSPLGYILGDEGSGAVLGRLFIGSLLK----GQMPEGLCEAFLQEYGLTSA-DII 76 (176)
T ss_dssp SCEEEEEESSSEEEEEECSSSEEEECCCCHHHHCCTTSHHHHHHHHHHHHHT----TCSCTTHHHHHHHHTTCCHH-HHH
T ss_pred CCcEEEEecCChheEEECCCCcEEEeCCCCccccCcccHHHHHHHHHHHHHH----hcccchHHHHHHHHhCCCch-HHH
Confidence 5899999999999999988899999999999999999999999999886544 44567899999999996443 434
Q ss_pred HHhccCC-ChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccccc
Q 017527 226 GWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWD 304 (370)
Q Consensus 226 ~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~ 304 (370)
.+.+... ....++.+++.|++ .+||+.|.+|+++++.++...+. ..+. ..+.+|++.||++. .+
T Consensus 77 ~~~~~~~~~~~~~A~~A~~v~~--~~~d~~a~~Ii~~aa~el~~~~~---~~~~------~~~~pv~l~Ggv~~---~~- 141 (176)
T d1zbsa1 77 ESVYRKPFPNRFLAGFSPFIAQ--HLDIPAVYSLVQNSFDDFLVRNV---LRYN------RPDLPLHFIGSVAF---HY- 141 (176)
T ss_dssp HHHHHSSCHHHHHHTTHHHHHT--TTTSHHHHHHHHHHHHHHHHHHT---GGGC------CTTSCEEEESHHHH---HT-
T ss_pred HHHHHcCCCchHHHhhchhhHH--hcCCHHHHHHHHHHHHHHHHHHH---Hhcc------cCCCeEEEECcHHH---HH-
Confidence 4444333 34567888888875 57999999999999999876532 2332 12457999999974 33
Q ss_pred chHHHHHHHHhhCCCc-eeeCCCCC
Q 017527 305 IGREVVKCILRDYPGA-VPIRPKVC 328 (370)
Q Consensus 305 l~~~v~~~l~~~~p~~-~~~~p~~~ 328 (370)
.+.+++.++++-..+ .+.+++++
T Consensus 142 -~~~l~~~l~~~~i~i~~i~~~Pi~ 165 (176)
T d1zbsa1 142 -REVLSSVIKKRGLTLGSVLQSPME 165 (176)
T ss_dssp -HHHHHHHHHHTTCCEEEEESCSHH
T ss_pred -HHHHHHHHHHcCCEeccccCCHhH
Confidence 667777777754333 33344444
|
| >d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=99.80 E-value=7.7e-21 Score=168.40 Aligned_cols=174 Identities=13% Similarity=0.098 Sum_probs=119.8
Q ss_pred CCCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCC
Q 017527 145 KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLEL 218 (370)
Q Consensus 145 ~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~ 218 (370)
.+|++|+++|||+ |+|++.||++++ +||+||+..+. +.-|.||+.+|.+.+. +..++.+.+.+.+..
T Consensus 2 ~~n~v~i~igtGi-G~giv~~g~l~~G~~g~AGEiGh~~v~~~g~~c~cG~~GclE~~~------S~~al~~~~~~~~~~ 74 (197)
T d1z05a2 2 VDNSVLISIHHGL-GAGIVLDGRVLQGRHGNIGELGHIQIDPQGKRCHCGNYGCLETVA------SSQAIRDQVTARIQA 74 (197)
T ss_dssp CSSEEEEEESSSE-EEEEEETTEECCTTTTCTTBCTTSBCCTTCCBCTTSCBSBTHHHH------SHHHHHHHHHHHHHT
T ss_pred CccEEEEEECCCE-EEEEEECCEEEeCCCCCCcccccCccccccccccCCCCCchHHHh------cHHHHHHHHHHHHhc
Confidence 4799999999998 678999999975 89999987654 3445555544332211 111222222221110
Q ss_pred CChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 219 SSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 219 ~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
..... .. .......++|+++|++||+.|++++++++++|+.++.+++++|| |+.|||||++..
T Consensus 75 ~~~~~--------~~-~~~~~~~~~l~~~a~~gd~~a~~~~~~~~~~la~~i~nl~~~ld--------P~~IviGG~~~~ 137 (197)
T d1z05a2 75 GEPSC--------LA-TVEEISIEDICAAAADGDPLAVDVIQQLGRYLGAAIAIVINLFN--------PEKILIGGVINQ 137 (197)
T ss_dssp TCCCT--------TT-TCSSCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGG
T ss_pred CCccc--------cc-cchhcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhHHHhcC--------CCEEEEecchHH
Confidence 00000 00 00012457899999999999999999999999999999999999 799999999998
Q ss_pred CcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 299 ANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
..+.| ++.+++.++++..... ....+|..++.++ ++++|||.|+
T Consensus 138 ~~~~~--~~~i~~~~~~~~~~~~-----~~~~~I~~s~lg~~a~~~GAA~l~ 182 (197)
T d1z05a2 138 AKSIL--YPSIEQCIREQSLPVY-----HQDLKLVESRFYKQATMPGAALIK 182 (197)
T ss_dssp GHHHH--HHHHHHHHHHHSCHHH-----HTTCEEEECSCSSCTTHHHHHHHH
T ss_pred hhHHH--HHHHHHHHHHhccccc-----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 87776 8999999988653221 1233455666555 7789998765
|
| >d1zxoa2 c.55.1.5 (A:107-280) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein BT3618 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.78 E-value=2.7e-20 Score=162.50 Aligned_cols=164 Identities=17% Similarity=0.241 Sum_probs=123.2
Q ss_pred CCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
+.++++++|||++++++..+|+..|+|+|||++||+|||+|||+++++.+++..+ ++.+.+.++++|+.+ .+.++
T Consensus 1 k~Giv~I~GTGS~~~~~~~~g~~~r~gG~G~~lGDeGSg~~iG~~al~~~~~~~~----~~~l~~~l~~~~~~~-~~~~i 75 (174)
T d1zxoa2 1 KAGIACILGTGSNSCFYNGKEIVSNISPLGFILGDEGSGAVLGKLLVGDILKNQL----PATLKEEFLKQFDLT-PPEII 75 (174)
T ss_dssp SCBEEEEESSSEEEEEECSSSEEEECCCCCTTTSCCSSHHHHHHHHHHHGGGTCS----CSHHHHHHHHHHTCC-HHHHG
T ss_pred CCeEEEEecCchheeEECCCCcEEEeCCCCccCCCCchHHHHHHHHHHHHHHhhC----CchHHHHHHHHHCCC-hHHHH
Confidence 3689999999999999988899999999999999999999999999987655433 457888899999864 45555
Q ss_pred HHhccCC-ChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccccc
Q 017527 226 GWTYVDP-SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWD 304 (370)
Q Consensus 226 ~~~~~~~-~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~ 304 (370)
...|..+ .+..++.+++.|++ .+||+.|.+|++++..++.+. ++..++ ..+.+|.+.|||+. .|
T Consensus 76 ~~~~~~~~~~~~iA~~A~~v~~--~~~d~~a~~ii~~~~~~l~~~---~~~~~~------~~~~~v~~vGsva~---~~- 140 (174)
T d1zxoa2 76 DRVYRQPFPNRFLASLSPFIAQ--HLEEPAIRQLVMNSFIAFFRR---NVMQYD------YKQYPVHFIGSIAY---CY- 140 (174)
T ss_dssp GGTTTSSCSTTTSSTTTHHHHT--TTTSTTTTHHHHHHHHHHHTT---TGGGSC------TTTSCEEECSHHHH---HT-
T ss_pred HHHHhCCCccHHHHhhchHHHH--cCCCHHHHHHHHHHHHHHHHH---HHHhcC------CCCceEEEEccHHH---HH-
Confidence 5555443 44567889998887 468999999999998888764 333443 12457999999964 33
Q ss_pred chHHHHHHHHhhCCCc-eeeCCCCCcc
Q 017527 305 IGREVVKCILRDYPGA-VPIRPKVCIW 330 (370)
Q Consensus 305 l~~~v~~~l~~~~p~~-~~~~p~~~~~ 330 (370)
.+.+++.++++-..+ .+..++++++
T Consensus 141 -~~~l~~~l~~~~l~i~~i~~~Pi~gl 166 (174)
T d1zxoa2 141 -KEILQDAARQTGIQIGKILQSPMEGL 166 (174)
T ss_dssp -HHHHHHHTTTTTCCEEEECSCTHHHH
T ss_pred -HHHHHHHHHHcCCeecCccCChhHHH
Confidence 778888887753333 3344555543
|
| >d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=99.78 E-value=6e-19 Score=143.25 Aligned_cols=104 Identities=14% Similarity=0.114 Sum_probs=90.0
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|||+++++++|. +|+++.+.+.+++. .+++.+++.|.++++++..+.+ .+.+||||+
T Consensus 1 MyiGiDiGgT~i~~~l~d~---------~g~i~~~~~~~t~~---~~~~~~~~~i~~~i~~~~~~~~----~~~~igi~~ 64 (117)
T d2ap1a2 1 MYYGFDIGGTKIALGVFDS---------TRRLQWEKRVPTPH---TSYSAFLDAVCELVEEADQRFG----VKGSVGIGI 64 (117)
T ss_dssp EEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCC---SCHHHHHHHHHHHHHHHHHHHT----SCCEEEEEE
T ss_pred CEEEEEECcceEEEEEEeC---------CCCEEEEEEEeecc---cCHHHHHHHHHHHHHHHHhhcC----cceeEEEec
Confidence 4699999999999999999 89999999887653 2688999999999999988764 467999999
Q ss_pred cCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhcCC
Q 017527 103 SGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGTMG 144 (370)
Q Consensus 103 pG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~g 144 (370)
||+++++. ..+|++.|+++|+ +||+++||+||+++||.++
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pv~l~NDan~aalaE~w~ 116 (117)
T d2ap1a2 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLD--RDVRLDNDANCFALSEAWD 116 (117)
T ss_dssp SSBSCCTTSCCBCTTCTTTTTSCHHHHHHHHHT--SCEEEEEHHHHHHHHHHTS
T ss_pred CCccccccceeeccCccccCCCcHHHHHHHHhC--CCEEEEeHHHhhHhhcccc
Confidence 99977543 2589999999998 8999999999999998754
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2.2e-18 Score=140.64 Aligned_cols=113 Identities=25% Similarity=0.363 Sum_probs=102.5
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-cCcceE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAVRAV 98 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~-~~v~~I 98 (370)
|+.+++|||+|||||+++++|. +|+++.+.+.++.|+...+.+++.++|.+++++++++++.+. .++.++
T Consensus 1 m~~~~~GIDgGGTkT~~~l~d~---------~G~~l~~~~~g~~N~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~~i~~i 71 (117)
T d2ch5a2 1 MAAIYGGVEGGGTRSEVLLVSE---------DGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVDPLVPLRSL 71 (117)
T ss_dssp SSCEEEEEEECTTCEEEEEEET---------TSCEEEEEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCCTTCCBSEE
T ss_pred CCcEEEEEEcChhhEEEEEECC---------CCCEEEEEEcCCCCcchhhHHHHHHHHHHHHHHHHHHhcCCCCccccEE
Confidence 6779999999999999999999 899999999999998778999999999999999999988765 479999
Q ss_pred EEeecCCCChhhHHHHHHHHHhhCCC-CceEEEeChHHHHHHhh
Q 017527 99 CLAVSGVNHPTDQQRILNWLRDIFPG-NVRLYVHNDALAALASG 141 (370)
Q Consensus 99 gIgvpG~~~~~~~~~l~~~L~~~f~~-~~pV~V~NDa~aa~~g~ 141 (370)
++|++|++++.+...|.+.|++.|+. ..+++|.||+.+|++++
T Consensus 72 ~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~~a 115 (117)
T d2ch5a2 72 GLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA 115 (117)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH
T ss_pred EEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHhhc
Confidence 99999999998888999999999974 14699999999998865
|
| >d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.77 E-value=2.4e-19 Score=155.56 Aligned_cols=165 Identities=12% Similarity=0.022 Sum_probs=110.8
Q ss_pred CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
+|+++|++|||+ |+|++.||++++ +||+||+..+... ..+. .+ +.+. +
T Consensus 2 ~n~~~vtlGtGi-G~giv~ng~l~~G~~g~AGEiGh~~v~~~~------------------~~~~-~~-----e~~~--s 54 (175)
T d2gupa2 2 ENAACVVIGTGI-GGAMIINGRLHRGRHGLGGEFGYMTTLAPA------------------EKLN-NW-----SQLA--S 54 (175)
T ss_dssp SSEEEEEESSSE-EEEEEETTEEECCTTSCTTCGGGCBSSCCS------------------SSCC-BH-----HHHH--S
T ss_pred ccEEEEEEecce-eEEEEECCEEEECCCCCcceeeeeeecccc------------------cccc-cc-----hhhc--c
Confidence 589999999998 668999999986 6888887653211 0111 11 1111 1
Q ss_pred hhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCc
Q 017527 221 PDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300 (370)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~ 300 (370)
...+.++........ ....+++++++.+||+.|.+++++++++|++.+++++++|| |+.|||||++++.
T Consensus 55 ~~~l~~~~~~~~~~~--~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~~~i~~ld--------p~~IvlGG~i~~~- 123 (175)
T d2gupa2 55 TGNMVRYVIEKSGHT--DWDGRKIYQEAAAGNILCQEAIERMNRNLAQGLLNIQYLID--------PGVISLGGSISQN- 123 (175)
T ss_dssp HHHHHHHHHHHHSSC--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGC-
T ss_pred chHHHHHHHhhcccc--chhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhc--------CceEEECCcccch-
Confidence 222222211000000 12357889999999999999999999999999999999999 7999999999875
Q ss_pred ccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeEeeec
Q 017527 301 RRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCRIQL 353 (370)
Q Consensus 301 ~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 353 (370)
+.| ++.+++.++++.+... +......+..++.++ ++++|||++.+.|-
T Consensus 124 ~~~--~~~l~~~l~~~~~~~~---~~~~~~~i~~s~~~~~a~l~GAa~l~l~~~ 172 (175)
T d2gupa2 124 PDF--IQGVKKAVEDFVDAYE---EYTVAPVIQACTYHADANLYGALVNWLQEE 172 (175)
T ss_dssp HHH--HHHHHHHHHHHHHHCT---TCCSCCCEEECSCSTTHHHHHHHHHHHHHT
T ss_pred HHH--HHHHHHHHHHHHhhcc---ccCCCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 445 7888888877532211 011123455566554 78999999875444
|
| >d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Mlc protein species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.6e-19 Score=159.50 Aligned_cols=172 Identities=12% Similarity=-0.003 Sum_probs=117.7
Q ss_pred CCCCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCC-CchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcC
Q 017527 144 GKLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDW-GSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217 (370)
Q Consensus 144 g~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~-Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~ 217 (370)
|.+|+++|++|||+ |+|++.||++++ +||+||+..+. |-.|.||+.+|.+.+. +...+.+...+...
T Consensus 1 G~~n~~~i~ig~Gi-G~gii~ng~l~~G~~g~aGEiGh~~v~~~g~~c~cG~~gcle~~~------s~~al~~~~~~~~~ 73 (196)
T d1z6ra3 1 GARDVIQVVIDHNV-GAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIA------SVDSILELAQLRLN 73 (196)
T ss_dssp TCSSEEEEEESSSE-EEEEEETTEETTTTSSCCBCGGGSBSCTTSCBCTTSCBSBTHHHH------SHHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCe-EEEEEECCEEEECCCCCCccccccccccccccccccccchHHHhc------CHHHHHHHHHHhhc
Confidence 56899999999998 778999999964 88999986543 4445555544332211 11122222221111
Q ss_pred CCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcc
Q 017527 218 LSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297 (370)
Q Consensus 218 ~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~ 297 (370)
. .... ... .-....+++++++++||+.|.+++++++++|+.++.+++++|| |+.|||||++.
T Consensus 74 ~-~~~~---~l~------~~~~~~~~~~~~~~~gd~~a~~i~~~~~~~la~~i~~l~~~ld--------P~~IvigG~~~ 135 (196)
T d1z6ra3 74 Q-SMSS---MLH------GQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN--------PQKILIGSPLS 135 (196)
T ss_dssp T-CTTC---GGG------SSCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGG
T ss_pred c-ccch---hcc------CCcCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEecchh
Confidence 0 0000 000 0012357899999999999999999999999999999999999 79999999999
Q ss_pred cCcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccce
Q 017527 298 EANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAA 347 (370)
Q Consensus 298 ~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~ 347 (370)
...+.| ++.+++.++++.+... ....+|..++.++ ++++|||.
T Consensus 136 ~~~~~~--~~~l~~~~~~~~~~~~-----~~~~~I~~s~l~~~a~~~GAAl 179 (196)
T d1z6ra3 136 KAADIL--FPVISDSIRQQALPAY-----SQHISVESTQFSNQGTMAGAAL 179 (196)
T ss_dssp GGHHHH--HHHHHHHHHHHSCHHH-----HTTCEEEECSCCCCTTTTHHHH
T ss_pred hhhHHH--HHHHHHHHHHhccccc-----CCCcEEEECCCCChHHHHHHHH
Confidence 877776 8999999988754322 1234566666655 66788753
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=99.75 E-value=1.9e-17 Score=133.78 Aligned_cols=110 Identities=23% Similarity=0.267 Sum_probs=91.5
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc--e
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR--A 97 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~--~ 97 (370)
+++|+||||+|||||+++++|. +|+++.+...++.|.. .+++++++++.+++++++++++....++. .
T Consensus 2 sm~y~lGID~GGT~tk~~l~d~---------~G~il~~~~~~~~~~~-~~~~~~~~~i~~~i~~~~~~ag~~~~~~~~~~ 71 (114)
T d1zc6a1 2 SIRYLIGVDGGGTGTRIRLHAS---------DGTPLAMAEGGASALS-QGIAKSWQAVLSTLEAAFQQAGLPAAPASACA 71 (114)
T ss_dssp CCCEEEEEEECSSCEEEEEEET---------TCCEEEEEEESCCCGG-GCHHHHHHHHHHHHHHHHHHTTCCCCCGGGEE
T ss_pred CccEEEEEEcCcceEEEEEEcC---------CCCEEEEEEccCCCcc-cCHHHHHHHHHHHHHHHHHHcCCChhhhceeE
Confidence 3569999999999999999999 8999999888888775 68999999999999999999988877654 6
Q ss_pred EEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhcC
Q 017527 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM 143 (370)
Q Consensus 98 IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~~ 143 (370)
+++|+||..++.....|.+ .++.-.||+|+||+++|+++++.
T Consensus 72 ~~~g~aG~~~~~~~~~l~~----~~~~~~~v~v~nDa~~A~~ga~~ 113 (114)
T d1zc6a1 72 IGLGLSGVHNRQWAGEFES----QAPGFARLSLATDGYTTLLGAHG 113 (114)
T ss_dssp EEEEESCCCTTSHHHHHHH----TCCCCSEEEEECHHHHHHHHHTT
T ss_pred EEEEecCCCcHHHHHHHHH----hCCCCCeEEEECHHHHHHHHhcC
Confidence 8889999988766544443 33311599999999999998643
|
| >d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.7e-18 Score=142.68 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=97.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
..|+||||+|+|+++++++|. +|+++.+.+.+.... .+++.+++.+.++++++++..+....++.+|||
T Consensus 3 ~~~~igidig~~~i~~~l~d~---------~G~il~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~~~~~~i~gigi 71 (128)
T d2hoea3 3 CAYVLGIEVTRDEIAACLIDA---------SMNILAHEAHPLPSQ--SDREETLNVMYRIIDRAKDMMEKLGSKLSALTV 71 (128)
T ss_dssp GCEEEEEEECSSEEEEEEEET---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred cEEEEEEEECCCEEEEEEEcC---------CCCEEEEEEEecccC--CCHHHHHHHHHHHHHHHHHHhccccCceEEEec
Confidence 469999999999999999999 899999888766433 378999999999999999888777789999999
Q ss_pred eecCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC
Q 017527 101 AVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK 145 (370)
Q Consensus 101 gvpG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~ 145 (370)
++||++++.. +.+|++.|+++|+ +||+++||++|++++|. ||.
T Consensus 72 ~~pG~vd~~~g~i~~~~~l~w~~~~l~~~l~~~~~--~pv~i~NDa~~~alaE~~fG~ 127 (128)
T d2hoea3 72 AAPGPIDTERGIIIDPRNFPLSQIPLANLLKEKYG--IEVWVENDADMGAVGEKWYTK 127 (128)
T ss_dssp EESSCEETTTTEECCCSSCTTBTSCHHHHHHHHHC--SEEEEEEHHHHHHHHHHHHTT
T ss_pred ceeeeEcCCCCEEEeeccccccCCchHHHHHHHcC--CCEEEEeHHHHHHHHHHHhcC
Confidence 9999965432 2479999999998 99999999999999985 664
|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=6.5e-19 Score=152.21 Aligned_cols=160 Identities=17% Similarity=0.111 Sum_probs=113.1
Q ss_pred CCCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCC-chHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCC
Q 017527 145 KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWG-SGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLEL 218 (370)
Q Consensus 145 ~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~G-s~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~ 218 (370)
.+|++++++|||+ |+|++.||++++ +||+||++.+.. ..+.||+.+| +|.+.
T Consensus 2 ~~n~~~i~~g~Gi-G~giv~ng~l~~G~~g~aGEiGh~~~~~~~~~~~cg~~gc--------------------lE~~~- 59 (170)
T d2aa4a2 2 ITDMVFITVSTGV-GGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCGCGRTGC--------------------VEAIA- 59 (170)
T ss_dssp CCCEEEEEESSSE-EEEEEETTEEECCTTSCCCCGGGSBSCTTSCBCTTSCBSB--------------------HHHHH-
T ss_pred CceEEEEEECCCE-EEEEEECCEEEECCCCCCCceeeeeecccccccCcCCccc--------------------hhhhh-
Confidence 3689999999998 678999999975 788888766432 2333332211 12221
Q ss_pred CChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 219 SSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 219 ~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+...+.+.... ..-....+++++++.+||+.|++++++++++|+..+.+++++|| |+.|||||++..
T Consensus 60 -s~~al~~~~~~----~~~~~~~~~l~~~~~~gd~~a~~i~~~~~~~la~~l~~l~~~ld--------P~~IvlgG~i~~ 126 (170)
T d2aa4a2 60 -SGRGIAAAAQG----ELAGADAKTIFTRAGQGDEQAQQLIHRSARTLARLIADIKATTD--------CQCVVVGGSVGL 126 (170)
T ss_dssp -SHHHHHHTCCG----GGTTCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEEHHHHT
T ss_pred -hcchHHHHHHh----hccCCCHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHhhhheEC--------CCEEEEeChhhh
Confidence 23333332211 01123457899999999999999999999999999999999999 799999999976
Q ss_pred CcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeEe
Q 017527 299 ANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCR 350 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~ 350 (370)
. +.| ++.+++.+.++ |... ..+|..++.++ ++++|||.|++
T Consensus 127 ~-~~~--~~~i~~~~~~~-~~~~-------~~~I~~s~l~~~a~~~GAA~lA~ 168 (170)
T d2aa4a2 127 A-EGY--LALVETYLAQE-PAAF-------HVDLLAAHYRHDAGLLGAALLAQ 168 (170)
T ss_dssp S-TTH--HHHHHHHHTTS-CGGG-------CCEEEECSCSSCHHHHHHHHHHH
T ss_pred h-hhH--HHHHHHHHHhc-cCCC-------CCeEEecCCCCcHHHHHHHHHHC
Confidence 4 455 77888777653 2221 23466666665 77899999874
|
| >d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative regulator protein YcfX species: Salmonella typhimurium [TaxId: 90371]
Probab=99.75 E-value=1.5e-19 Score=157.97 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=112.2
Q ss_pred CCCCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCC
Q 017527 144 GKLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLEL 218 (370)
Q Consensus 144 g~~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~ 218 (370)
..++++++++|||+ |+|++.||++++ +||+||+..+.......+. ......+.|.-.. +++.+.
T Consensus 4 ~y~~v~~l~~GtGi-G~giv~nG~l~~G~~g~AGEiGh~~v~~~~~~~~~~--------~~~~~~c~cg~~g-c~e~~~- 72 (186)
T d2ap1a1 4 QYPLVMGLILGTGV-GGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGF--------DFPLRRCGCGQMG-CIENYL- 72 (186)
T ss_dssp GCSEEEEEEESSSE-EEEEEETTEEECCTTSCTTCGGGSBCCHHHHHHHCT--------TSCCCBCTTSCBS-BTHHHH-
T ss_pred CCCEEEEEEEccCe-EEEEEECCEEEeCCCCCCceeEEEEECCCCcccccc--------cccccccccCchh-hHHhhh-
Confidence 34678999999998 678999999986 7888887664322110000 0000111111111 112221
Q ss_pred CChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCccc
Q 017527 219 SSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLE 298 (370)
Q Consensus 219 ~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~ 298 (370)
+...+...... ........+++++.+++||+.|++++++++++||.++.+++++|| |+.|||||++..
T Consensus 73 -s~~~~~~~~~~---~~~~~~~~~~~~~~~~~gd~~a~~i~~~~~~~la~~i~nl~~~ld--------Pe~IvlGG~i~~ 140 (186)
T d2ap1a1 73 -SGRGFAWLYQH---YYDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVD--------PDLLVIGGGLSN 140 (186)
T ss_dssp -SHHHHHHHHHH---HHCCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGG
T ss_pred -hhhhHHHHhhh---ccccccchhhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHcC--------cCEEEECCchhh
Confidence 11111111100 000012457889999999999999999999999999999999999 799999999987
Q ss_pred CcccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeE
Q 017527 299 ANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 299 ~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
.. .| ++++++.++++.... ....+|..+++++ ++++|||+|+
T Consensus 141 ~~-~~--~~~l~~~~~~~~~~~------~~~~~I~~s~lg~~a~~~GAA~la 183 (186)
T d2ap1a1 141 FT-AI--TTQLAERLPRHLLPV------ARAPRIERARHGDAGGMRGAAFLH 183 (186)
T ss_dssp ST-HH--HHSSGGGSGGGSCTT------CCCCEEEECSCTTTHHHHHHHHTT
T ss_pred hH-HH--HHHHHHHHHHHhcCc------CCCCEEEECCCCChHHHHHHHHHh
Confidence 54 44 788888887754221 1233566667666 7889999887
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=2.6e-19 Score=154.59 Aligned_cols=152 Identities=13% Similarity=0.065 Sum_probs=110.2
Q ss_pred CCeEEEEEcccceeeeeccCCceEe-----eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~-----aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
++++|+++|||+ |+|++.||++++ +||+||+...++..+.|+...+ +
T Consensus 2 ~~~~~i~~g~Gi-G~gii~~g~l~~G~~g~aGEiGh~~v~~~~~~~c~~~~~---------------------------s 53 (169)
T d2hoea2 2 DSFAWILTGKGI-GAGIIIDGELYRGENGYAGEIGYTRVFNGNEYVFLEDVC---------------------------N 53 (169)
T ss_dssp SCEEEEEESSSC-EEEEEETTEECCCSSSCCCCGGGCEEECSSSEEEHHHHH---------------------------C
T ss_pred CeEEEEEECCce-EEEEEECCEEEeCCCCCCcccccccccCCCCcccccccc---------------------------h
Confidence 689999999998 668999999865 7788887654443332222221 1
Q ss_pred hhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCc
Q 017527 221 PDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300 (370)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~ 300 (370)
...+.+... ....+++++++++||+.|.+++++++++|+.++.+++++|| |+.|||||++....
T Consensus 54 ~~~l~~~~~--------~~~~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~~d--------Pe~IvlgG~~~~~~ 117 (169)
T d2hoea2 54 ENVVLKHVL--------SMGFSSLAEARDSGDVRVKEYFDDIARYFSIGLLNLIHLFG--------ISKIVIGGFFKELG 117 (169)
T ss_dssp HHHHHHHHH--------HHCCC-TTHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEEEGGGGGH
T ss_pred HHHHHhhhc--------ccchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeChHHhch
Confidence 111111110 11224577889999999999999999999999999999999 79999999999877
Q ss_pred ccccchHHHHHHHHhhCCCceeeCCCCCccccccccccc-ccccccceeEe
Q 017527 301 RRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAALCR 350 (370)
Q Consensus 301 ~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~ 350 (370)
+.| ++.+++.++++.+... ..++..+..++ +.++|||.+++
T Consensus 118 ~~~--~~~i~~~~~~~~~~~~-------~~~i~~s~~~~~a~~~GAa~~~~ 159 (169)
T d2hoea2 118 ENF--LKKIKIEVETHLLYKH-------SVDMSFSKVQEPVIAFGAAVHAL 159 (169)
T ss_dssp HHH--HHHHHHHHHHHCSSSC-------CCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCCC-------CCEEEECCCCCCHHHHHHHHHHH
Confidence 776 9999999988654321 23445555544 77899999874
|
| >d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.4e-18 Score=138.17 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=82.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++||||+|||+++++++|. +|+++.+.+.+++.. .+++.+.+.+.++++++. .++.+|||++
T Consensus 2 ~~lgiDiGgT~i~~~l~d~---------~G~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~-------~~~~~igI~~ 63 (119)
T d2aa4a1 2 TTLAIDIGGTKLAAALIGA---------DGQIRDRRELPTPAS--QTPEALRDALSALVSPLQ-------AHAQRVAIAS 63 (119)
T ss_dssp CEEEEEECSSEEEEEEECT---------TCCEEEEEEEECCSS--CCHHHHHHHHHHHHTTTG-------GGCSEEEEEE
T ss_pred eEEEEEeCcCEEEEEEEcC---------CCCEEEeEEEecccc--CcHHHHHHHHHHHHHHhh-------ccCceEEEEe
Confidence 5899999999999999999 899999988876543 367877777776665542 3578999999
Q ss_pred cCCCChh------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc
Q 017527 103 SGVNHPT------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT 142 (370)
Q Consensus 103 pG~~~~~------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~ 142 (370)
||++++. | ..+|++.|+++|+ +||+++||+||++++|+
T Consensus 64 pG~v~~~~~~~~~~~~l~~w~~~~l~~~l~~~~~--~pv~i~NDanaaalgE~ 114 (119)
T d2aa4a1 64 TGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTN--LPTIAINDAQAAAWAEF 114 (119)
T ss_dssp SSEEETTEEECSSGGGGGGGTTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHH
T ss_pred eeeEcCCCcEEEccCccccccCCCHHHHHHHHhC--CCEEEEehHHHHHHHHH
Confidence 9986532 1 2489999999998 99999999999999985
|
| >d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Transcriptional regulator VC2007 species: Vibrio cholerae [TaxId: 666]
Probab=99.70 E-value=1.8e-17 Score=136.09 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=96.2
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
.-++||||+|+|+++++++|. +|+++.+.+.+.... +++++++.+.+.+++++++.+.+..++.+|||
T Consensus 3 g~~~lgi~ig~~~i~~~l~d~---------~G~il~~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~~~~~~i~gIgi 70 (128)
T d1z05a3 3 GWQFLSMRLGRGYLTIALHEL---------GGEVLIDTKIDIHEI---DQDDVLARLLFEIEEFFQTYAAQLDRVTSIAI 70 (128)
T ss_dssp TEEEEEEEEETTEEEEEEEET---------TSCEEEEEEEECCCC---BHHHHHHHHHHHHHHHHHHTTTTCCEEEEEEE
T ss_pred CCEEEEEEECCCEEEEEEEcC---------CCCEEEEEEeccccC---CHHHHHHHHHHHHHHHHHHcccccccceEEEe
Confidence 347899999999999999999 899999988776533 57889999999999999999988889999999
Q ss_pred eecCCCChhh------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC
Q 017527 101 AVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK 145 (370)
Q Consensus 101 gvpG~~~~~~------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~ 145 (370)
++||++++.. ..+|++.|+++|+ +||+++||+||++++|. +|.
T Consensus 71 ~~pG~vd~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~PV~l~NDana~a~aE~~~G~ 126 (128)
T d1z05a3 71 TLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKATG--LPVFVANDTRAWALAEKLFGH 126 (128)
T ss_dssp EESSEEETTTTEEEECSSSBCSSBCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHST
T ss_pred eeeeeeeccceeeeccccCCCCCcchHHHHHHhcC--CCEEEEehHHHHHHHHHhhCC
Confidence 9999965432 2479999999998 89999999999999985 553
|
| >d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=99.69 E-value=2.3e-17 Score=135.82 Aligned_cols=111 Identities=18% Similarity=0.119 Sum_probs=86.7
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEE-EEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR-AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~-~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgI 100 (370)
.++||||+|||+++++++|.. .++++.+ .+.+++.. .+++.+++.+.++++++.++.. ...++.+|||
T Consensus 2 ~~vlGiDiGgT~i~~~l~d~~--------~g~i~~~~~~~~t~~~--~~~~~~~~~i~~~~~~l~~~~~-~~~~~~gIGi 70 (129)
T d1woqa1 2 APLIGIDIGGTGIKGGIVDLK--------KGKLLGERFRVPTPQP--ATPESVAEAVALVVAELSARPE-APAAGSPVGV 70 (129)
T ss_dssp CCEEEEEECSSEEEEEEEETT--------TTEEEEEEEEEECCSS--CCHHHHHHHHHHHHHHHHTSTT-CCCTTCCEEE
T ss_pred CCEEEEEECcceEEEEEEECC--------CCEEEEEEeecccccC--CCHHHHHHHHHHHHHHHHhccc-cccccceeee
Confidence 369999999999999999971 3566654 34554433 3789999999999998765443 3356889999
Q ss_pred eecCCCChh-----------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC
Q 017527 101 AVSGVNHPT-----------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK 145 (370)
Q Consensus 101 gvpG~~~~~-----------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~ 145 (370)
++||++++. | +.+|+++|++.|+ +||+++||+|||+++|+ +|.
T Consensus 71 ~~pG~vd~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~i~NDan~aalgE~~~Ga 126 (129)
T d1woqa1 71 TFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLG--RPVEVINDADAAGLAEARYGA 126 (129)
T ss_dssp EESSCEETTEECCCTTSCGGGTTCBHHHHHHHHHT--SCEEEEEHHHHHHHHHHHHST
T ss_pred cceeeEecCeEEEecccCCCcccccchhhHHHhcC--CcEEEEEhHHHHHHHHHhhcc
Confidence 999996532 2 2489999999998 89999999999999985 553
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=99.68 E-value=5.6e-16 Score=140.24 Aligned_cols=249 Identities=13% Similarity=0.094 Sum_probs=153.0
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCc-ceEEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV-RAVCL 100 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v-~~IgI 100 (370)
.|+||||+|||+|+++++|. +|+++.+...++.. .++.+++.+.+.++ +.+...... ...+.
T Consensus 2 M~~lGIDiGGT~~k~~vvd~---------~g~il~~~~~~t~~----~~~~~~~~i~~~l~----~~~~~~~~~~~~~~~ 64 (259)
T d1huxa_ 2 IYTLGIDVGSTASKCIILKD---------GKEIVAKSLVAVGT----GTSGPARSISEVLE----NAHMKKEDMAFTLAT 64 (259)
T ss_dssp CEEEEEEECSSEEEEEEEET---------TTEEEEEEEEECCS----SCCHHHHHHHHHHH----HHTCCGGGCSEEEEE
T ss_pred cEEEEEEeCcceEEEEEEcC---------CCcEEEEEEecCCC----CHHHHHHHHHHHHH----Hcccccccceeeecc
Confidence 38999999999999999999 89999988776543 24455555555444 444332222 22222
Q ss_pred eecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhhc--CCCCCeEEEEEcccceeeeeccCCceEeeCCCCCCc
Q 017527 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (370)
Q Consensus 101 gvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~--~g~~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~ll 178 (370)
+.++.. ... .|....|+.++.+++.. .+..+++++..|++. .+....+|...+.++|++..
T Consensus 65 ~~~~~~--------------~~~--~~~~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~g~~~~~~~~~~~~ 127 (259)
T d1huxa_ 65 GYGRNS--------------LEG--IADKQMSELSCHAMGASFIWPNVHTVIDIGGQDV-KVIHVENGTMTNFQMNDKCA 127 (259)
T ss_dssp STTTTT--------------TTT--TCSEEECHHHHHHHHHHHHCTTCCEEEEEETTEE-EEEEEETTEEEEEEEESSCC
T ss_pred cccchh--------------hhh--cCCcccccHHHHHHHHHHhCCCCCEEEecCCCCc-EEEEEeCCcEEEEecCcccC
Confidence 222221 112 56777899998766542 444678888888887 44566899999999999887
Q ss_pred CCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHH
Q 017527 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKI 258 (370)
Q Consensus 179 gd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~i 258 (370)
+..|+.++.....+. . +...+.+ +... . ..... . ......+. -..+..++.++++.+..+
T Consensus 128 ~g~g~~~~~~~~~~~--------~-~~~e~~~-l~~~-~-~~~~~-----~-~~~~~~~~--~~~i~~~~~~~~~~~~i~ 187 (259)
T d1huxa_ 128 AGTGRFLDVMANILE--------V-KVSDLAE-LGAK-S-TKRVA-----I-SSTCTVFA--ESEVISQLSKGTDKIDII 187 (259)
T ss_dssp TTSHHHHHHHHHHHT--------C-CTTTHHH-HHTT-C-CSCCC-----C-CCCSHHHH--HHHHHHHHHTTCCHHHHH
T ss_pred CchHHHHHHHHHHcC--------C-CHHHHHH-HHhc-C-CCCcc-----c-CCCccchh--hhHHhHHhhCCCcHHHHH
Confidence 777766655544331 0 1111111 1000 0 00000 0 00001111 135778889999988888
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccccccccc
Q 017527 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQ 338 (370)
Q Consensus 259 l~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~ 338 (370)
...+...+...+..+.+.++ |+.||++||+++ ++.+ .+.+++.+. .++.+|. ..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~--------~~~Iv~gGGv~~-~~~~--~~~l~~~l~-----~~i~~~~---------~~~ 242 (259)
T d1huxa_ 188 AGIHRSVASRVIGLANRVGI--------VKDVVMTGGVAQ-NYGV--RGALEEGLG-----VEIKTSP---------LAQ 242 (259)
T ss_dssp HHHHHHHHHHHHHHHHTTCC--------CSSEEEESGGGG-CHHH--HHHHHHHHC-----SCEECCG---------GGG
T ss_pred HHHHHHHHHHHHHHHHhccC--------CCcEEEEccccc-cHHH--HHHHHHHHC-----CCEEcCC---------Ccc
Confidence 88777777777777777777 799999999995 3444 666666662 2333442 123
Q ss_pred cccccccceeE
Q 017527 339 ASANCCGAALC 349 (370)
Q Consensus 339 ~~~~~~~~~~~ 349 (370)
.++.+|||.|+
T Consensus 243 ~agaiGAA~lA 253 (259)
T d1huxa_ 243 YNGALGAALYA 253 (259)
T ss_dssp GHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36689998887
|
| >d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=99.66 E-value=2.1e-17 Score=143.46 Aligned_cols=160 Identities=12% Similarity=0.003 Sum_probs=105.0
Q ss_pred CCCCeEEEEEcccceeeeeccCCceEe---eCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 144 GKLHGCVLIAGTGTIAYGFTEDGRDAR---AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 144 g~~~~v~l~~GTGi~g~gii~dG~l~~---aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
|.+|++|+++|||+ |+|+++||++++ +||+||+..+.... +...+.|+....+++.+. +
T Consensus 1 G~~~~~~l~lGtGi-G~gii~ng~l~~G~~aGEiGh~~v~~~~~---------------~~~~~~~~~~~~~~e~~~--s 62 (176)
T d1xc3a2 1 GLDSCLYITIGTGI-GAGAIVEGRLLQGLSHPEMGHIYIRRHPD---------------DVYQGKCPYHGDCFEGLA--S 62 (176)
T ss_dssp TCSCEEEEEESSSE-EEEEEETTEECCSSSCCCGGGCBCCCCTT---------------CCCCCSBTTTBSBHHHHH--S
T ss_pred CcceEEEEEEccCe-EEEEEECCEEeeCCCCCccceeccccccc---------------CccccCcCCccchhhhhc--c
Confidence 45799999999998 668999999975 68899986643210 111122222111233332 2
Q ss_pred hhhHHHHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCc
Q 017527 221 PDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEAN 300 (370)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~ 300 (370)
...+.... ......++.+.++|++++++|+..+.+++++|| |+.|||||+++...
T Consensus 63 ~~~l~~~~-----------------~~~~~~~~~~~~i~~~~~~~la~~i~~~~~~~d--------P~~IviGGgi~~~~ 117 (176)
T d1xc3a2 63 GPAIEARW-----------------GKKAADLSDIAQVWELEGYYIAQALAQYILILA--------PKKIILGGGVMQQK 117 (176)
T ss_dssp HHHHHHHH-----------------SSCTTTTTTCHHHHHHHHHHHHHHHHHHHHHTC--------CSCEEEESGGGGST
T ss_pred HHHHHHHH-----------------hhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCEEEEcChhhccH
Confidence 22222211 111223455678999999999999999999999 79999999999875
Q ss_pred ccccchHHHHHHHHhhCCCceee--CCCCCccccccccccc-ccccccceeE
Q 017527 301 RRWDIGREVVKCILRDYPGAVPI--RPKVCIWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 301 ~~~~l~~~v~~~l~~~~p~~~~~--~p~~~~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
+ + ++.+++.+.+..+..... .+.....++..+++++ ++++|||.|+
T Consensus 118 ~-l--~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GAa~la 166 (176)
T d1xc3a2 118 Q-V--FSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGTLVLA 166 (176)
T ss_dssp H-H--HHHHHHHHHHHHTTSSCCGGGTTTGGGTEECCTTGGGHHHHHHHHHH
T ss_pred h-H--HHHHHHHHHHHHHHhhccccccccCCCeEEeCCCCCcHHHHHHHHHH
Confidence 4 3 677777777654333211 1223355677777766 8899999988
|
| >d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Putative fructokinase YhdR species: Bacillus subtilis [TaxId: 1423]
Probab=99.65 E-value=1.4e-16 Score=129.48 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=78.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+++|||+|||+++++++|. +|+++.+.+.+++ .++++++.+.+.+++ .++.+|||++
T Consensus 1 l~~giDiGgT~i~~~l~d~---------~g~i~~~~~~~t~-----~~~~~~~~i~~~~~~---------~~~~~igi~~ 57 (118)
T d1xc3a1 1 MLGGIEAGGTKFVCAVGRE---------DGTIIDRIEFPTK-----MPDETIEKVIQYFSQ---------FSLQAIGIGS 57 (118)
T ss_dssp CEEEEEECSSEEEEEEECT---------TSCEEEEEEEECC-----CHHHHHHHHHHHHTT---------SCCSEEEEEE
T ss_pred CEEEEEeccCEEEEEEEcC---------CCCEEEEEEecCC-----CHHHHHHHHHHHHhh---------ccceecceeE
Confidence 3799999999999999999 8999999887653 366666666554432 3578999999
Q ss_pred cCCCChh----------------h-HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC
Q 017527 103 SGVNHPT----------------D-QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK 145 (370)
Q Consensus 103 pG~~~~~----------------~-~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~ 145 (370)
||++++. | ..+|.+.|++.|+ +||+++||+||++++|+ +|.
T Consensus 58 ~G~v~~~~~~~~~g~v~~~~~~~w~~~~l~~~l~~~~~--~pv~i~NDana~algE~~~G~ 116 (118)
T d1xc3a1 58 FGPVDNDKTSQTYGTITATPKAGWRHYPFLQTVKNEMK--IPVGFSTDVNAAALGEFLFGE 116 (118)
T ss_dssp CSSBCCCTTSTTTTSBCCCSSTTTBTCCHHHHHHHHHC--SCEEEEEHHHHHHHHHHHHST
T ss_pred EeeeecCCCccceeEEEcCCcccccCcCHHHHHHHHHC--CCEEEeehHHHHHHHHHhhCC
Confidence 9986532 1 3589999999998 99999999999999985 553
|
| >d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Hypothetical protein SP2142 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.65 E-value=1.3e-16 Score=129.25 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=74.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+++||+|||+++++++|. +|+++.+.+.+++. ..+++ .+.+.+.+++ .++.+||||+
T Consensus 2 ~i~~iDiGgT~i~~~l~d~---------~g~i~~~~~~~t~~----~~~~~----~~~i~~~~~~-----~~i~gIGi~~ 59 (114)
T d2gupa1 2 TIATIDIGGTGIKFASLTP---------DGKILDKTSISTPE----NLEDL----LAWLDQRLSE-----QDYSGIAMSV 59 (114)
T ss_dssp CEEEEEEETTEEEEEEECT---------TCCEEEEEEECCCS----SHHHH----HHHHHHHHTT-----SCCSEEEEEE
T ss_pred eEEEEEeCcccEEEEEEcC---------CCCEEEEEEEcccc----cHHHH----HHHHHHHhhh-----cccceEEEec
Confidence 5889999999999999999 89999998877642 34444 4444455442 4689999999
Q ss_pred cCCCChhh-------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc
Q 017527 103 SGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT 142 (370)
Q Consensus 103 pG~~~~~~-------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~ 142 (370)
||+++++. ..++++.++ +|+ +||+++||+|||++||+
T Consensus 60 pG~vd~~~g~i~~~~~l~~~~~~~l~~~l~-~~~--~pV~veNDanaaalgE~ 109 (114)
T d2gupa1 60 PGAVNQETGVIDGFSAVPYIHGFSWYEALS-SYQ--LPVHLENDANCVGLSEL 109 (114)
T ss_dssp SSEECTTTCBEESCCSSGGGSSSBHHHHTG-GGC--CCEEEEEHHHHHHHHHH
T ss_pred cccccCCccEEEcccccCcccCCcHHHHHH-hCC--CCEEEEhHHHHHHHHHH
Confidence 99976542 237888885 587 89999999999999985
|
| >d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Mlc protein species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=8.3e-17 Score=132.48 Aligned_cols=110 Identities=9% Similarity=0.106 Sum_probs=94.6
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.++||||+|+|+++++++|. +|+++.+.+.+.... +++++++.|.+.|++++++.+.+..++.+|||+
T Consensus 4 ~~~l~i~i~~~~i~~~l~Dl---------~G~~l~~~~~~~~~~---~~~~~~~~l~~~i~~~l~~~~~~~~~i~gIgi~ 71 (129)
T d1z6ra2 4 WHYLSLRISRGEIFLALRDL---------SSKLVVEESQELALK---DDLPLLDRIISHIDQFFIRHQKKLERLTSIAIT 71 (129)
T ss_dssp CEEEEEEEETTEEEEEEEET---------TCCEEEEEEEECCSS---CSSCHHHHHHHHHHHHHHHTGGGCCCEEEEEEE
T ss_pred eEEEEEEECCCEEEEEEEcC---------CCCEEEEEEeecccc---chhHHHHHHHHHHHHHHHhcCcccccceeEEEe
Confidence 48999999999999999999 899999887765432 467789999999999999988777889999999
Q ss_pred ecCCCChhh-------------HHHHHHHHHhhCCCCceEEEeChHHHHHHhhc-CCC
Q 017527 102 VSGVNHPTD-------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-MGK 145 (370)
Q Consensus 102 vpG~~~~~~-------------~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~~-~g~ 145 (370)
+||+++++. ..++++.|++.|+ +||+++||++|++++|. +|.
T Consensus 72 ~pG~v~~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pV~~~NDa~a~alaE~~~G~ 127 (129)
T d1z6ra2 72 LPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTG--VPVYIQHDISAWTMAEALFGA 127 (129)
T ss_dssp ESSEEETTTTEEEECTTCTTCSSBCHHHHHHHHHS--SCEEEEEHHHHHHHHHHHHST
T ss_pred eeeeeeecccceeccCcchhccCcchHHHHHHhcC--CCEEEEehHHHHHHHHHhhCC
Confidence 999865331 2489999999998 89999999999999985 553
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=99.58 E-value=6.3e-17 Score=146.66 Aligned_cols=249 Identities=13% Similarity=0.017 Sum_probs=141.2
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
.||||+|||+|+++++|. +++++.+...+ +++.+++.| .+ ..+..|+++.|
T Consensus 2 kiGIDiGGT~ik~~lvd~---------~g~i~~~~~~~-------t~~~i~~~i--------~~-----~~~~~i~i~g~ 52 (267)
T d2ewsa1 2 KVGIDAGGTLIKIVQEQD---------NQRTFKTELTK-------NIDQVVEWL--------NQ-----QQIEKLCLTGG 52 (267)
T ss_dssp EEEEEECSSEEEEEEECS---------SCEEEEEEEGG-------GHHHHHHHH--------HT-----SCCSEEEEEST
T ss_pred EEEEEEChhhEEEEEEeC---------CCcEEEEEecc-------cHHHHHHHH--------HH-----hhhhheeeecc
Confidence 489999999999999998 79888765321 244433322 22 35678888888
Q ss_pred CCCChhh-----------HHH-HHH--HHHhhCC-CCceEEEeChHHHHHHhhcCCCCCeEEEEEcccceeeeeccCCce
Q 017527 104 GVNHPTD-----------QQR-ILN--WLRDIFP-GNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRD 168 (370)
Q Consensus 104 G~~~~~~-----------~~~-l~~--~L~~~f~-~~~pV~V~NDa~aa~~g~~~g~~~~v~l~~GTGi~g~gii~dG~l 168 (370)
|..++.. ... ... .....+. ...|+...||.....+. .+......++.|||+ |.|++.++..
T Consensus 53 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~g~-G~g~~~~~~~ 129 (267)
T d2ewsa1 53 NAGVIAENINIPAQIFVEFDAASQGLGILLKEQGHDLADYIFANVGTGTSLH--YFDGQSQRRVGGIGT-GGGMIQGLGY 129 (267)
T ss_dssp THHHHHTTSSSCCEECCHHHHHHHHHHHHHHHTTCCCSCEEEEEESSSEEEE--EECSSCEEEEEEESC-SHHHHHHHHH
T ss_pred cccccchheeccccccchHHHHHHHhhhhhhhcCCcccchHHHhcccceEEe--cccCceeEeeccccc-ccceehhhHH
Confidence 8743221 111 111 1111111 11467777776654432 233456678888887 4467777776
Q ss_pred EeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHHHHhccCCChHHHhhhHHHHHHHH
Q 017527 169 ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCA 248 (370)
Q Consensus 169 ~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~~~~~~~~~~~~~a~~~~~v~~~A 248 (370)
.+ +..+...++++.+.. .++....+................ ...... ..........
T Consensus 130 ~~--------~~~~~~ge~g~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~------~~~~~~~~~~ 186 (267)
T d2ewsa1 130 LL--------SQITDYKQLTDMAQH-----GDRNTIDLKVRHIYKDTEPPIPGD----LTAANF------GHVLHHLDAD 186 (267)
T ss_dssp HH--------HCCCCHHHHHHHHTT-----CCCTTTCEETTTC-------CCTT----SEEETT------TTGGGCTTSC
T ss_pred Hh--------cCCCChhHHHHhhcc-----CCCcccccccchhhcCCCccchhh----hhhhhh------cchhhhhhhh
Confidence 55 223345677775431 111111111100000000000000 000000 0011122333
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCC
Q 017527 249 EAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVC 328 (370)
Q Consensus 249 ~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~ 328 (370)
...|..+.++++.+.++|+..+.++.+.+| |+.||++||+....+.+ .+.+++.+++ ...++..|
T Consensus 187 ~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~--------~~~Iv~~GG~~~~~~~l--~~~i~~~~~~--~~~~i~~~--- 251 (267)
T d2ewsa1 187 FTPSNKLAAVIGVVGEVVTTMAITVAREFK--------TENIVYIGSSFHNNALL--RKVVEDYTVL--RGCKPYYV--- 251 (267)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CCEEEEESGGGTTCHHH--HHHHHHHHHH--TTCEEEEC---
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHhhcC--------CCCEEEECChhhcCHHH--HHHHHHHHHh--CCCEEEEC---
Confidence 456788889999999999999999999999 68899999998887665 8888888876 34444333
Q ss_pred ccccccccccc-ccccccceeE
Q 017527 329 IWPHWHSCDQA-SANCCGAALC 349 (370)
Q Consensus 329 ~~~~~~~~~~~-~~~~~~~~~~ 349 (370)
++.+ ++.+|||-|+
T Consensus 252 -------~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 252 -------ENGAFSGAIGALYLE 266 (267)
T ss_dssp -------TTGGGHHHHHHHHTC
T ss_pred -------CCccHHHHHHHHHhc
Confidence 3333 6688887553
|
| >d1woqa2 c.55.1.10 (A:140-263) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK species: Arthrobacter sp. KM [TaxId: 184230]
Probab=99.43 E-value=1.6e-14 Score=118.60 Aligned_cols=116 Identities=16% Similarity=0.016 Sum_probs=82.7
Q ss_pred CCeEEEEEcccceeeeeccCCceEeeCCCCCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCChhhHH
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~aGg~G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s~~~l~ 225 (370)
.+++++++|||+ |+|++.||++++.||+||+..+.+. .+.+. |...+.
T Consensus 3 g~v~~ltlGTGi-G~gii~nG~l~~ggEiGh~~~~~~~-----------------------------~e~~~--s~~~~~ 50 (124)
T d1woqa2 3 GTVLVITLGTGI-GSAFIFDGKLVPNAELGHLEIDGHD-----------------------------AETKA--SAVARE 50 (124)
T ss_dssp SEEEEEEESSSE-EEEEEETTEEETTCCGGGCEETTEE-----------------------------HHHHH--SHHHHH
T ss_pred cEEEEEEEcCCe-eEEEEECCEEccCCccccccccCCC-----------------------------hhhhh--ccchHH
Confidence 368899999998 6689999999999999998653321 11111 111100
Q ss_pred HHhccCCChHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccc
Q 017527 226 GWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDI 305 (370)
Q Consensus 226 ~~~~~~~~~~~~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l 305 (370)
+.. ..+++++++|++.+.++++.|| |+.||||||+++..+.|
T Consensus 51 --------------------~~~--------~~~~~~~~~la~~l~~~~~~~d--------Pe~IVlGGgi~~~~~~~-- 92 (124)
T d1woqa2 51 --------------------RDG--------LSWDEYSVLLQRYFSHVEFLFS--------PELFIVGGGISKRADEY-- 92 (124)
T ss_dssp --------------------HTT--------CCHHHHHHHHHHHHHHHHHHHC--------CSEEEEESGGGGGGGGT--
T ss_pred --------------------HHH--------HHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcchHhhChHHH--
Confidence 000 1267889999999999999999 79999999999988776
Q ss_pred hHHHHHHHHhhCCCceeeCCCCCccccccccccc-cccccccee
Q 017527 306 GREVVKCILRDYPGAVPIRPKVCIWPHWHSCDQA-SANCCGAAL 348 (370)
Q Consensus 306 ~~~v~~~l~~~~p~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~ 348 (370)
++.++ +.++|..+.+++ ++++|||-.
T Consensus 93 ~~~l~-----------------~~~~i~~a~l~~~AgliGAAl~ 119 (124)
T d1woqa2 93 LPNLR-----------------LRTPIVPAVLRNEAGIVGAAIE 119 (124)
T ss_dssp GGGCC-----------------CSSCEEECSCSTTHHHHHHHHH
T ss_pred hhhhh-----------------ccCeEEecCcCCcHHHHHHHHH
Confidence 44332 234577777776 788998643
|
| >d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=1.4e-13 Score=110.03 Aligned_cols=98 Identities=15% Similarity=0.054 Sum_probs=69.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
++|+|++||||||+|+++++. ++.++... +.++... .+ +.+++++++++.+. ++.++|
T Consensus 1 t~~~L~~DIGGTn~r~alv~~---------~~~~l~~~~~~~~~~~--~~-------~~~~i~~~~~~~~~---~~~~~~ 59 (110)
T d1q18a1 1 TKYALVGDVGGTNARLALCDI---------ASGEISQAKTYSGLDY--PS-------LEAVIRVYLEEHKV---EVKDGC 59 (110)
T ss_dssp CCEEEEEEECSSEEEEEEEET---------TTCCEEEEEEEEGGGC--SC-------HHHHHHHHHHHHTC---CCSEEE
T ss_pred CcEEEEEEECchhEEEEEEEc---------CCCeEEEEEeecccch--hh-------HHHHHHHHHhhccc---ccceEE
Confidence 369999999999999999997 55555444 3333332 23 33445555655543 578999
Q ss_pred EeecCCCChh-------hHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 100 LAVSGVNHPT-------DQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 100 IgvpG~~~~~-------~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
+|+||+++.. .+....+.|++.|+. .||.|+||++|+++|
T Consensus 60 i~~ag~~~~~~~~~~n~~w~~~~~~l~~~~~~-~~v~v~NDa~AaA~g 106 (110)
T d1q18a1 60 IAIACPITGDWVAMTNHTWAFSIAEMKKNLGF-SHLEIINDFTAVSMA 106 (110)
T ss_dssp EEESSCCCSSEECCSSGGGCEEHHHHHHHTTC-SEEEEEEHHHHHHHH
T ss_pred EcccccccCcEEeecccCCccCHHHHHHHhCC-CcEEEEehHHHHhcc
Confidence 9999997632 234566889999983 359999999999886
|
| >d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein PG1100 species: Porphyromonas gingivalis [TaxId: 837]
Probab=99.41 E-value=9.1e-13 Score=105.07 Aligned_cols=105 Identities=21% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
++|+||.|||||++++.|. |+++.+.+.++.|+...+.+++.+.|.+.+.+.+. ...++|..+.+|+
T Consensus 1 MilivDgGgTKT~~vl~d~----------g~~i~~~~t~g~Np~~~~~~~~~~~l~~~~~~~l~---~~~~~i~~i~~g~ 67 (107)
T d1zbsa2 1 MILIGDSGSTKTDWCIAKE----------GKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIG---QKASSIRAVYFYG 67 (107)
T ss_dssp CEEEEEECSSEEEEEEEET----------TEEEEEEEEECCCTTTSCHHHHHHHHTTTTHHHHT---TSTTTCCEEEEEE
T ss_pred CEEEEEeccccEEEEEECC----------CCeEEEEecCCcCcccCCHHHHHHHHHHHHHHHHh---ccccCCcEEEEEe
Confidence 4789999999999988875 89999988888998888999999999876655443 3447899999999
Q ss_pred cCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHhh
Q 017527 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG 141 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g~ 141 (370)
+|++.+ ....+.+.|.+.|+...++.|.||..+|+++.
T Consensus 68 AG~~~~-~~~~i~~~l~~~~~~~~~i~V~~D~~aA~~a~ 105 (107)
T d1zbsa2 68 AGCTPA-KAPMLNEALDSMLPHCDRIEVAGDMLGAARAL 105 (107)
T ss_dssp TTCCTT-THHHHHHHHHHHSTTCSEEEEECHHHHHHHHH
T ss_pred cCCCch-hhHHHHHHHHHHCCCCCEEEECChHHHHHHHh
Confidence 999754 45678888888887535799999999988753
|
| >d1zxoa1 c.55.1.5 (A:3-106) Hypothetical protein BT3618 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hypothetical protein BT3618 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.81 E-value=1.1e-05 Score=62.54 Aligned_cols=100 Identities=17% Similarity=0.072 Sum_probs=69.1
Q ss_pred EEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeecC
Q 017527 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (370)
Q Consensus 25 lGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvpG 104 (370)
|-+|.|+||+.+.++|. |+.+.+.+-...||.-.+.+.+.+.|.....-.+ ...+|..|-+-=+|
T Consensus 1 LIaDSGSTKtDW~l~~~----------g~~~~~~~T~G~NP~~~s~~~i~~~l~~~~~~~~-----~~~~v~~V~FYGAG 65 (104)
T d1zxoa1 1 LIADSGSTKTDWCVVLN----------GAVIKRLGTKGINPFFQSEEEIQQKLTASLLPQL-----PEGKFNAVYFYGAG 65 (104)
T ss_dssp -CEECCTTCEEEEEECS----------SSEEEEEEECCCCTTTSCSTTTTTTTTC------------------CEEECTT
T ss_pred CeeccCCCceeEEEEcC----------CCeEEEEEcCccCcccCCHHHHHHHHHhCcchhh-----hhccccEEEEEccC
Confidence 45799999999999975 7777766656667765667776666654433221 12568888888899
Q ss_pred CCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 105 ~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
+.++.....++..|+..|+. ..|.|+.|..+|+.+
T Consensus 66 C~~~~~~~~~~~~l~~~f~~-a~I~V~~DllaAa~A 100 (104)
T d1zxoa1 66 CTPEKAPVLRRAIADSLPVI-GNIKANSDMLAAAHG 100 (104)
T ss_dssp CCTTTTHHHHHHHHHHSCCC-SCCEEECSHHHHHHH
T ss_pred CCCccHHHHHHHHHHhCCCC-CEEEECchHHHHHHH
Confidence 98777777888888888874 789999999999875
|
| >d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]
Probab=97.80 E-value=0.00018 Score=62.47 Aligned_cols=114 Identities=19% Similarity=0.095 Sum_probs=73.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
.+.+|+||+|||+.|++++++. +++ ..+.+...+ +.+....+.+++++-|.+.|.+++++.+.... ..-
T Consensus 65 ~G~fLalDlGGTn~Rv~~V~L~-------g~~~~~~~~~~~~~ip~~~~~~~~~~lFd~iA~~i~~fl~~~~~~~~-~l~ 136 (208)
T d1bdga1 65 TGNFLALDLGGTNYRVLSVTLE-------GKGKSPRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMKDK-KFD 136 (208)
T ss_dssp CEEEEEEEESSSSEEEEEEEEC-------C-CCCCEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCCSS-CEE
T ss_pred cceEEEEEecCceEEEEEEEec-------CCCcceEEEEEEeeCCHHHccCCHHHHHHHHHHHHHHHHHhcCCCCC-ccc
Confidence 4689999999999999999981 012 233333333 33333345789999999999999998776533 334
Q ss_pred EEEeecCCCCh---------hh--------------HHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhcC
Q 017527 98 VCLAVSGVNHP---------TD--------------QQRILNWLRDIFPGNV-RLYVHNDALAALASGTM 143 (370)
Q Consensus 98 IgIgvpG~~~~---------~~--------------~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~~ 143 (370)
+|+..+=+... .| ...|.+.|+++ +.++ .+.|.||+.+.++++++
T Consensus 137 lGfTFSFP~~Q~s~~~g~Li~wtKgF~~~gv~g~dv~~lL~~al~r~-~~~v~v~aivNDTvgTL~a~ay 205 (208)
T d1bdga1 137 LGFTFSFPCVQKGLTHATLVRWTKGFSADGVEGHNVAELLQTELDKR-ELNVKCVAVVNDTVGTLASCAL 205 (208)
T ss_dssp EEEEECSCEEEETTTEEEECCCCTTCCCBTCTTSBHHHHHHHHHHTT-TCCEEEEEEECHHHHHHHHHHT
T ss_pred cEEEEcCccccCCCCcEEEEeccccccCCCccCCcHHHHHHHHHHhc-CCCceEEEEEEccHHHHHhhhc
Confidence 66665554320 01 12455666554 3113 57799999999887654
|
| >d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Glucokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=0.00016 Score=62.74 Aligned_cols=117 Identities=14% Similarity=-0.014 Sum_probs=73.0
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC--eE-EEEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP--VL-ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~--il-~~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.+.+++||+|||+.|++++++... ..++ +. .+...+ +.+....+.+++++.|.+.|.+++++..... +-.
T Consensus 58 ~G~flalDlGGTn~Rv~~V~L~~~-----~~~~~~~~~~~~~~~ip~~~~~~t~~~LFd~iA~~i~~fl~~~~~~~-~~l 131 (205)
T d1v4sa1 58 VGDFLSLDLGGTNFRVMLVKVGEG-----EEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMKH-KKL 131 (205)
T ss_dssp CEEEEEEEESSSEEEEEEEEECCC-----SSSCCEEEEEEEEEECCSTTTSSBHHHHHHHHHHHHHHHHHTTTCTT-CCC
T ss_pred cceEEEEecCCceEEEEEEEeCCC-----CCCCceeEEEeecccCChhhccCCHHHHHHHHHHHHHHHHHhhCCCC-Ccc
Confidence 568999999999999999987210 0122 11 112222 2233334578899999999999998876543 334
Q ss_pred eEEEeecCCCCh---------hh--------------HHHHHHHHHhhCCCCc-eEEEeChHHHHHHhhcC
Q 017527 97 AVCLAVSGVNHP---------TD--------------QQRILNWLRDIFPGNV-RLYVHNDALAALASGTM 143 (370)
Q Consensus 97 ~IgIgvpG~~~~---------~~--------------~~~l~~~L~~~f~~~~-pV~V~NDa~aa~~g~~~ 143 (370)
-+|+..+=+... .| ..-|.+.|.++...++ .+.|.||+.+.++++++
T Consensus 132 plGfTFSFP~~Q~sl~~g~Li~wtKgf~~~~~~g~dv~~lL~~al~r~~~~~v~v~aivNDTvgTL~s~ay 202 (205)
T d1v4sa1 132 PLGFTFSFPVRHEDIDKGILLNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYY 202 (205)
T ss_dssp EEEEEECSCEEEEETTEEEECCCCTTCCCBTCTTSBHHHHHHHHHTTTCSCCCEEEEEECHHHHHHHHHHT
T ss_pred ccEEEEcCccccCCCCcEEEEEcccccccCccccchHHHHHHHHHHhcCCCCceEEEEEEchHHHHHhhhc
Confidence 466666555321 01 2346666665532113 46688999999887754
|
| >d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=9.9e-05 Score=63.99 Aligned_cols=115 Identities=13% Similarity=0.019 Sum_probs=72.8
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC-eE--EEEEec-CCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL--ARAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~-il--~~~~~~-~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
.+.+|+||+|||+.|++++++.. +++ +. .....+ +.+....+.+++++.|.+.|.+++++.+.+.. -.
T Consensus 60 ~G~fLalDlGGTn~Rv~~V~L~g-------~~~~~~~~~~~~~~ip~~~~~~~~~eLFd~iA~~i~~fl~~~~~~~~-~~ 131 (205)
T d1czan3 60 NGDFLALDLGGTNFRVLLVKIRS-------GKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIKGP-RM 131 (205)
T ss_dssp CEEEEEEEESSSSEEEEEEEEEC-------STTCEEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCCSS-CC
T ss_pred cceEEEEEecCceEEEEEEEecC-------CCCceEEEEeeeecCCHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCC-cc
Confidence 46899999999999999998710 121 22 222222 22222234688999999999999998876543 33
Q ss_pred eEEEeecCCCCh---------hh--------------HHHHHHHHHhhCCCCce-EEEeChHHHHHHhhcC
Q 017527 97 AVCLAVSGVNHP---------TD--------------QQRILNWLRDIFPGNVR-LYVHNDALAALASGTM 143 (370)
Q Consensus 97 ~IgIgvpG~~~~---------~~--------------~~~l~~~L~~~f~~~~p-V~V~NDa~aa~~g~~~ 143 (370)
-+|+..+=+... .| ...|.+.|+++-..++. +.|.||+.+.++++.+
T Consensus 132 ~lGfTFSFP~~Q~s~~~g~Li~wtKgf~~~~~~g~dv~~lL~~al~~r~~~~v~v~aivNDTvgTL~s~ay 202 (205)
T d1czan3 132 PLGFTFSFPCQQTSLDAGILITWTKGFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAY 202 (205)
T ss_dssp EEEEEECSCEEEEETTEEEECCCCTTCCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHT
T ss_pred cceEEEeceeeccCCCcEEEEEeeCceecCCcccchHHHHHHHHHHhcCCCCceEEEEEEhhHHHHHhhcc
Confidence 466665554320 01 23567777765221244 5599999999887654
|
| >d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.68 E-value=0.0001 Score=64.12 Aligned_cols=114 Identities=13% Similarity=0.061 Sum_probs=71.9
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCC-eE-EEEEecCC-CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLP-VL-ARAAAGCS-NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~-il-~~~~~~~~-n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
.+.++++|+|||+.|++++.+.. +... +. .....+.+ +......+++++.|.+.|.+++++.+.... -.-
T Consensus 62 ~G~flalDlGGTn~Rv~~V~L~g------~~~~~~~~~~~~~~ip~~~~~~~~~~lFd~IA~~i~~fl~~~~~~~~-~l~ 134 (207)
T d1czan1 62 KGDFIALDLGGSSFRILRVQVNH------EKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIKDK-KLP 134 (207)
T ss_dssp CEEEEEEEESSSSEEEEEEEEEE------ETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCTTS-CCC
T ss_pred cceEEEEecCCceEEEEEEEeCC------CCCccEEEEEEeecCCHHHhcCCHHHHHHHHHHHHHHHHHhcCcCCC-CCc
Confidence 57999999999999999998710 0111 21 22222322 212234678999999999999988765533 334
Q ss_pred EEEeecCCCCh---------hh--------------HHHHHHHHHhh--CCCCceEEEeChHHHHHHhhc
Q 017527 98 VCLAVSGVNHP---------TD--------------QQRILNWLRDI--FPGNVRLYVHNDALAALASGT 142 (370)
Q Consensus 98 IgIgvpG~~~~---------~~--------------~~~l~~~L~~~--f~~~~pV~V~NDa~aa~~g~~ 142 (370)
+|+..+=|... .| ...|.+.|+++ ++ -..+.|.||+.+.++++.
T Consensus 135 lGfTFSFP~~Q~sl~~g~Li~wtKgF~~~~v~G~dv~~lL~~al~r~~~~~-v~v~aivNDTvgTL~s~a 203 (207)
T d1czan1 135 VGFTFSFPCQQSKIDEAILITWTKRFKASGVEGADVVKLLNKAIKKRGDYD-ANIVAVVNDTVGTMMTCG 203 (207)
T ss_dssp EEEEECSCEECSSTTCCEECCCCTTCCCBTCTTSBHHHHHHHHHHHHCSCC-CCEEEEECHHHHHHHHHH
T ss_pred cEEEEcCeeccCCCCcEEEEeccccCccCCCCCCcHHHHHHHHHHhcCCCC-ceEEEEEEchHHHHHHhh
Confidence 55555544220 01 23567777765 33 246789999999988764
|
| >d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]
Probab=97.47 E-value=0.00051 Score=59.44 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=69.1
Q ss_pred CcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCe-EEEEEe-cCCCc-cccCHHHHHHHHHHHHHHHHHHcCCC-ccCcc
Q 017527 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV-LARAAA-GCSNH-NSVGEDAARETIEKVMADALLKSGSN-RSAVR 96 (370)
Q Consensus 21 ~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~i-l~~~~~-~~~n~-~~~~~~~~~~~l~~~i~~~l~~~~~~-~~~v~ 96 (370)
.+.++++|+|||+.|++++.+. +++.. +.+... .+... ...+.+++++.|.+.|.+++++.... ..+..
T Consensus 62 ~G~flalDlGGTnlRv~~V~L~-------g~~~~~~~~~~~~ip~~~~~~~~~~~lFd~iA~~i~~f~~e~~~~~~~~~l 134 (207)
T d1ig8a1 62 SGDFLAIDLGGTNLRVVLVKLG-------GDRTFDTTQSKYRLPDAMRTTQNPDELWEFIADSLKAFIDEQFPQGISEPI 134 (207)
T ss_dssp EEEEEEEEECSSEEEEEEEEEE-------SSSCEEEEEEEEECCTTGGGCSCTHHHHHHHHHHHHHHHHHHCTTCCCSCE
T ss_pred cceEEEEEecCceEEEEEEEEc-------CCCceEEeeeeeeCCHHHhcCCcHHHHHHHHHHHHHHHHHHhcccccCCcc
Confidence 4689999999999999999981 01221 222222 22221 12356789999999999999876432 23344
Q ss_pred eEEEeecCCCC--h-------hh--------------HHHHHHHHHhh-CCCCceEEEeChHHHHHHhhc
Q 017527 97 AVCLAVSGVNH--P-------TD--------------QQRILNWLRDI-FPGNVRLYVHNDALAALASGT 142 (370)
Q Consensus 97 ~IgIgvpG~~~--~-------~~--------------~~~l~~~L~~~-f~~~~pV~V~NDa~aa~~g~~ 142 (370)
-+|+..+=+.. + .| ...|.+.|+++ ++ -..+.|.||+.+.++++.
T Consensus 135 ~lGfTFSFP~~Q~~i~~g~Li~wtKgF~~~~~~G~dv~~lL~~al~r~~~~-v~v~aivNDTvgtL~a~~ 203 (207)
T d1ig8a1 135 PLGFTFSFPASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRNIP-IEVVALINDTTGTLVASY 203 (207)
T ss_dssp EEEEECCSSEECSBTTCCEECCCCTTCCCTTCTTSBHHHHHHHHHHHTTCC-EEEEEEECHHHHHHHHHH
T ss_pred eeEEEEeceeecCCCCcEEEEeeeccccccCcCCCcHHHHHHHHHHHcCCC-ceEEEEEEhhHHHHHhhc
Confidence 45555544421 0 01 12455555544 22 124679999999888764
|
| >d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=97.43 E-value=7.4e-06 Score=73.28 Aligned_cols=73 Identities=16% Similarity=0.256 Sum_probs=58.3
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~ 96 (370)
|+||||+|+|++|++++|. +|+++.+.+.+.+ ....+++++..+.+.+++++++.+++.++.+|.
T Consensus 2 yvlgiDiGTtsvKa~l~D~---------~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~~~~~~~~i~ 72 (252)
T d1r59o1 2 YVMAIDQGTTSSRAIIFDR---------NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRPEAIA 72 (252)
T ss_dssp EEEEEBCCSSBCBCCEECS---------SSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTTTTCCTTSEE
T ss_pred EEEEEEecccceeeeEEeC---------CCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhhhhhcccccc
Confidence 8999999999999999998 7998876654322 112246888888899999999988888888999
Q ss_pred eEEEeecC
Q 017527 97 AVCLAVSG 104 (370)
Q Consensus 97 ~IgIgvpG 104 (370)
+|||..-+
T Consensus 73 aI~is~~~ 80 (252)
T d1r59o1 73 GIGITNQR 80 (252)
T ss_dssp EEEECCCS
T ss_pred eEEEeCCc
Confidence 98887643
|
| >d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Tex RuvX-like domain-like domain: Transcriptional accessory factor Tex species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.16 E-value=0.0025 Score=52.11 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=64.2
Q ss_pred CcEEEEEEcC-ccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 21 REVILGLDGG-TTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 21 ~~~vlGVDiG-gT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
.+.+||+|=| .|.++++++|. +|+++...+.-+.+.. ...+...+.|.+ ++++.. +..|+
T Consensus 4 ~~~vlg~DPg~r~gck~AvlD~---------~G~vld~~viyp~~~~-~~~~~a~~~l~~----li~k~~-----p~vIa 64 (149)
T d3bzka5 4 PRATLGLDPGLRTGVKVAVVDA---------TGKLLDTATVYPHAPK-NQWDQTLAVLAA----LCAKHQ-----VELIA 64 (149)
T ss_dssp SCCEEEEECCSTTCEEEEEECT---------TSCEEEEEEECCSTTT-CCHHHHHHHHHH----HHHHTT-----CCEEE
T ss_pred CceEEEECCCcccccEEEEECC---------CCCEEEEEEEecCCcH-HHHHHHHHHHHH----HHHHcC-----CeEEE
Confidence 4589999999 89999999999 8999998776443332 234555555544 454443 44555
Q ss_pred EeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 100 IgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
|| -|..+.+...-+.+++++.-..++++.+.||.-|.+.+
T Consensus 65 IG-NgTasre~~~~v~~l~~~~~~~~i~~~iV~e~gAsvYs 104 (149)
T d3bzka5 65 IG-NGTASRETDKLAGELIKKYPGMKLTKIMVSEAGASVYS 104 (149)
T ss_dssp EE-SSTTHHHHHHHHHHHHHHCGGGCCEEEEECCTTHHHHH
T ss_pred EC-CCccHHHHHHHHHHHHHhCCCCCcEEEEEeccchhhhh
Confidence 54 23333333345566665531113789999999887764
|
| >d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: Acetate kinase species: Archaeon Methanosarcina thermophila [TaxId: 2210]
Probab=97.00 E-value=0.002 Score=55.02 Aligned_cols=138 Identities=13% Similarity=0.112 Sum_probs=84.7
Q ss_pred CCeEEEEEcccceeeeeccCCceEee-CCC----CCCcCCCCchHHHHHHHHHHHHHHHcCCCCCchhHHHHHHHcCCCC
Q 017527 146 LHGCVLIAGTGTIAYGFTEDGRDARA-AGA----GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSS 220 (370)
Q Consensus 146 ~~~v~l~~GTGi~g~gii~dG~l~~a-Gg~----G~llgd~Gs~~~iG~~~~~~~~~~~dg~~~~~~l~~~~~~~~~~~s 220 (370)
.+.|++.+|.|+--+ -+.+|+..-. -++ |.+.+... |..++..+ -.+.+..+. +
T Consensus 5 ~~lIv~HLG~G~Sv~-Ai~~GksvDtsmG~tpleGl~m~tRs------------------Gdldp~~~-~~l~~~~g~-s 63 (201)
T d1g99a2 5 TKIITCHLGNGSSIT-AVEGGKSVETSMGFTPLEGLAMGTRC------------------GSIDPAIV-PFLMEKEGL-T 63 (201)
T ss_dssp CEEEEEEESSSEEEE-EEETTEEEEESCCSSTTSSSCCSSCC------------------CSCCTTHH-HHHHHHHTC-C
T ss_pred ccEEEEEeCCCceee-eeeCCEEEEeCCCCCCccCCCCCCCC------------------CCCChHHH-HHHHHHcCC-C
Confidence 468899999998444 5589998642 122 22222211 11112222 222223332 4
Q ss_pred hhhHHHHhccCCChHH---HhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcc
Q 017527 221 PDELIGWTYVDPSWAR---IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVL 297 (370)
Q Consensus 221 ~~~l~~~~~~~~~~~~---~a~~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~ 297 (370)
.+++....+++....- .....++|.+.+++||+.|+-+++-++..+.+.|.+....++- .+.||+.||+.
T Consensus 64 ~~ei~~~Ln~~sGL~g~sG~s~D~R~v~~~~~~Gd~~A~la~d~~~yri~k~Iga~~a~Lgg-------vDaiVfTGGig 136 (201)
T d1g99a2 64 TREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNG-------ADAVVFTAGIG 136 (201)
T ss_dssp HHHHHHHHHHSCHHHHHHSSCSCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTS-------CSEEEEEHHHH
T ss_pred HHHHHHHHhhccCcEeecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhccCC-------CCEEEEecccc
Confidence 4444444432210000 0124588999999999999999999999999999999999983 79999999999
Q ss_pred cCcccccchHHHHHHH
Q 017527 298 EANRRWDIGREVVKCI 313 (370)
Q Consensus 298 ~~~~~~~l~~~v~~~l 313 (370)
+..+.+ ++.+.+.+
T Consensus 137 en~~~v--R~~i~~~l 150 (201)
T d1g99a2 137 ENSASI--RKRILTGL 150 (201)
T ss_dssp HHCHHH--HHHHHTTC
T ss_pred cccHHH--HHHHHhHH
Confidence 865443 44444333
|
| >d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: Propionate kinase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.79 E-value=0.0025 Score=54.60 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=54.6
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHH
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCI 313 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l 313 (370)
..++|.+.+++||+.|.-+++-++..+.+.|.+....++ ..+.||+.||+.+....+ ++.+.+.+
T Consensus 86 D~R~l~~~~~~gd~~A~la~d~~~yri~k~Iga~~a~Lg-------gvDaiVFTgGIGEn~~~v--R~~i~~~l 150 (205)
T d2e1za2 86 DLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLH-------RLDGIIFTGGIGENSVLI--RQLVIEHL 150 (205)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCS-------SCCEEEEEHHHHHHCHHH--HHHHHHTT
T ss_pred hHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCEEEEeCccccccHHH--HHHHHHHh
Confidence 457889999999999999999999999999999999987 279999999999865443 45555444
|
| >d1saza2 c.55.1.2 (A:173-375) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: butyrate kinase 2 species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.0072 Score=51.59 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=58.4
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 017527 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (370)
Q Consensus 240 ~~~~v~~~A~~GD~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~ 315 (370)
..++|.+.+++||+.|+-+++-++..+.+.|.+....++ | ..+.||+.||+.+..+.+ .+.+.+.+.-
T Consensus 83 D~rev~~~~~~Gd~~A~lA~d~~~y~i~K~Iga~~a~L~--G----~vDaIvfTgGIgen~~~v--r~~I~~~l~~ 150 (203)
T d1saza2 83 DAREVVRRIKQGDEWAKRVYRAMAYQIAKWIGKMAAVLK--G----EVDFIVLTGGLAHEKEFL--VPWITKRVSF 150 (203)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTT--T----CCSEEEEEEGGGGCTTTH--HHHHHHHHTT
T ss_pred cHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--C----CCCEEEECCccccCcHHH--HHHHHHhccc
Confidence 458899999999999999999999999999999999996 1 158999999999876554 7888888755
|
| >d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: CoaX-like domain: Type III pantothenate kinase, CoaX species: Thermotoga maritima [TaxId: 2336]
Probab=95.20 E-value=0.051 Score=41.43 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=50.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+.|.||+|-|++++++++. ++++...+..+... ...++....+.... . .....+..+.+
T Consensus 1 M~L~IDIGNT~ik~~l~~~----------~~l~~~~~~~~~~~--~~~~~~~~~~~~~~----~---~~~~~i~~~~~-- 59 (118)
T d3bexa1 1 MYLLVDVGNTHSVFSITED----------GKTFRRWRLSTGVF--QTEDELFSHLHPLL----G---DAMREIKGIGV-- 59 (118)
T ss_dssp EEEEEEECSSEEEEEEESS----------SSSCEEEEEECCTT--CCHHHHHHHHHHHH----G---GGGGGEEEEEE--
T ss_pred CEEEEEECCCeEEEEEEEC----------CEEEEEEEEccCcc--ccHHHHHHHHHHHH----h---hhhccccccee--
Confidence 4789999999999999986 67777776665543 25666554443332 1 11234555444
Q ss_pred cCCCChhhHHHHHHHHHhhCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFP 123 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~ 123 (370)
+.++ |+....+.+.+++.|+
T Consensus 60 ssVv-p~~~~~~~~~~~~~~~ 79 (118)
T d3bexa1 60 ASVV-PTQNTVIERFSQKYFH 79 (118)
T ss_dssp EESC-HHHHHHHHHHHHHHHS
T ss_pred eccc-hhHHHHHHHHHHHhcc
Confidence 3444 5556678888888776
|
| >d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein YqgF (RuvX) species: Escherichia coli [TaxId: 562]
Probab=94.75 E-value=0.036 Score=44.24 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=54.7
Q ss_pred CCcEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 20 ~~~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
|++.+||||.|.-+|=+++.|. .+.+ +.......+. .....++.|.+.+. + .++..|-
T Consensus 1 m~griLgiD~G~kriGvAvsd~---------~~~~-a~pl~~i~~~---~~~~~~~~l~~i~~----e-----~~~~~iV 58 (138)
T d1nu0a_ 1 MSGTLMAFDFGTKSIGVAVGQR---------ITGT-ARPLPAIKAQ---DGTPDWNIIERLLK----E-----WQPDEII 58 (138)
T ss_dssp CCCEEEEEECCSSEEEEEEEET---------TTTE-EEEEEEEEEE---TTEECHHHHHHHHH----H-----HCCSEEE
T ss_pred CCCcEEEEEeCCCEEEEEEeCC---------CCCc-cccceeeecc---cchhhHHHHHHHhh----c-----cCccEEE
Confidence 5678999999999999999997 4433 3221111111 11223344444443 3 3578899
Q ss_pred EeecCCCC--hhh----HHHHHHHHHhhCCCCceEEEeC
Q 017527 100 LAVSGVNH--PTD----QQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 100 IgvpG~~~--~~~----~~~l~~~L~~~f~~~~pV~V~N 132 (370)
||.|=-.+ ++. -..+.+.|++.|+ +||+..+
T Consensus 59 vG~P~~~~g~~~~~~~~v~~f~~~L~~~~~--i~V~~~D 95 (138)
T d1nu0a_ 59 VGLPLNMDGTEQPLTARARKFANRIHGRFG--VEVKLHD 95 (138)
T ss_dssp EEEEECTTSCBCHHHHHHHHHHHHHHHHHC--CCEEEEE
T ss_pred eecccccccchHHHHHHHHHHHHHHhhccC--CCeEEEe
Confidence 99984322 221 2367888989998 8998654
|
| >d1v4sa2 c.55.1.3 (A:219-461) Glucokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Glucokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.017 Score=50.71 Aligned_cols=85 Identities=11% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..+-+++.+++..+.....+..+-.|-+-|++.+.++.| .+.+++.+++..|..+ +.+
T Consensus 151 ~i~~~v~~RaA~L~Aa~i~ail~~~~~~~~~~~~~~~V~~dGSv~~~~p~y--~~~l~~~l~~l~~~~~--------i~l 220 (243)
T d1v4sa2 151 RACESVSTRAAHMCSAGLAGVINRMRESRSEDVMRITVGVDGSVYKLHPSF--KERFHASVRRLTPSCE--------ITF 220 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSEEEEEEEECHHHHHSTTH--HHHHHHHHHHHCTTEE--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcceEEEecchhhhcCchH--HHHHHHHHHHhCCCCc--------EEE
Confidence 467789999999999999999999874222222245789999999999998 9999999999887544 445
Q ss_pred cccccccccccccceeE
Q 017527 333 WHSCDQASANCCGAALC 349 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (370)
..++++. ..|||-++
T Consensus 221 ~~~~DgS--g~GAAl~A 235 (243)
T d1v4sa2 221 IESEEGS--GRGAALVS 235 (243)
T ss_dssp EECSSHH--HHHHHHHH
T ss_pred EECCCcc--HHHHHHHH
Confidence 5555554 77776543
|
| >d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: YeaZ-like domain: Hypothetical protein YeaZ species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.38 Score=36.03 Aligned_cols=95 Identities=18% Similarity=0.094 Sum_probs=68.3
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEeec
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgvp 103 (370)
+|++|--+..+.+++++. ++++.+......++ -+.|..++++++++++++.+++..|.++.
T Consensus 2 iLaIdTS~~~~sval~~~----------~~i~~~~~~~~~~h--------~~~l~~~i~~~l~~~~~~~~di~~i~v~~- 62 (106)
T d1okja1 2 ILAIDTATEACSVALWND----------GTVNAHFELCPREH--------TQRILPMVQDILTTSGTSLTDINALAYGR- 62 (106)
T ss_dssp EEEEECSSSEEEEEEEET----------TEEEEEEEECCSST--------TTTHHHHHHHHHHHTTCCGGGCCEEEEEE-
T ss_pred EEEEECCCcceEEEEEEC----------CEEEEEEEEccHHH--------HHHHHHHHHHHHHhcCCcceeeeEEEEee-
Confidence 789999999999999986 78887655432222 23466778889999999999999988876
Q ss_pred CCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHHH
Q 017527 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (370)
Q Consensus 104 G~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~~ 139 (370)
||..-.. .....+-|...++ +|++=.|--.+.+.
T Consensus 63 GPGsfTglRig~s~akgla~~~~--ip~~~v~sl~~la~ 99 (106)
T d1okja1 63 GPGSFTGVRIGIGIAQGLALGAE--LPMIGVSTLMTMAQ 99 (106)
T ss_dssp ESSCHHHHHHHHHHHHHHHHHTT--CCEEEEEHHHHHHH
T ss_pred ccCccccchHHHHHHHHHHHHcC--CCEEEeCHHHHHHH
Confidence 5544322 2355677777776 89988876665443
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=93.79 E-value=0.12 Score=43.06 Aligned_cols=77 Identities=10% Similarity=0.072 Sum_probs=52.8
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccCcceE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~---~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~I 98 (370)
.|+.++|+|.+++++++... .+...+++.....++... .-.+.+.+.+.|.++++++-++++.+.. ..+
T Consensus 2 ~~~~aiDIGs~kI~~~v~~~------~~~~~~iig~~~~~s~Gi~~G~I~d~~~~~~~I~~~I~~aE~~a~~~i~--~~v 73 (193)
T d1e4ft1 2 VFYTSIDIGSRYIKGLVLGK------RDQEWEALAFSSVKSRGLDEGEIKDAIAFKESVNTLLKELEEQLQKSLR--SDF 73 (193)
T ss_dssp EEEEEEEECSSEEEEEEEEE------ETTEEEEEEEEEEECCSEETTEESCHHHHHHHHHHHHHHHHHHHTSCCC--SCE
T ss_pred cEEEEEEcCCCEEEEEEEEE------cCCcEEEEEEEEEecCCccCCeEEeHHHHHHHHHHHHHHHHHHcCCCee--eEE
Confidence 48999999999999998865 222356676666554321 1135788999999999999888886422 244
Q ss_pred EEeecCCC
Q 017527 99 CLAVSGVN 106 (370)
Q Consensus 99 gIgvpG~~ 106 (370)
-++++|..
T Consensus 74 ~v~~~~~~ 81 (193)
T d1e4ft1 74 VISFSSVS 81 (193)
T ss_dssp EEEECCTT
T ss_pred EEEEcCce
Confidence 55666653
|
| >d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein YrrK (RuvX) species: Bacillus subtilis [TaxId: 1423]
Probab=93.57 E-value=0.071 Score=42.51 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=55.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEE-EecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEe
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARA-AAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~-~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIg 101 (370)
.+||||.|..++=+++.|. .+.+..-. +....+. ..+..++.|.+ ++++ .++..|-||
T Consensus 3 riLgiD~G~kriGvAisd~---------~~~~a~pl~~i~~~~~---~~~~~~~~l~~----ii~e-----~~i~~iViG 61 (140)
T d1vhxa_ 3 RILGLDLGTKTLGVALSDE---------MGWTAQGIETIKINEA---EGDYGLSRLSE----LIKD-----YTIDKIVLG 61 (140)
T ss_dssp EEEEEEECSSEEEEEEECT---------TSSSEEEEEEEECBGG---GTBCCHHHHHH----HHTT-----SEEEEEEEE
T ss_pred eEEEEEeCCCEEEEEEecC---------CCCcccceeeEeeccc---ccchHHHHHHH----HHHh-----hccceEEEe
Confidence 4899999999999999987 44433222 1212111 12223344444 3332 468899999
Q ss_pred ecCC----CChhhH--HHHHHHHHhhCCCCceEEEeChHHH
Q 017527 102 VSGV----NHPTDQ--QRILNWLRDIFPGNVRLYVHNDALA 136 (370)
Q Consensus 102 vpG~----~~~~~~--~~l~~~L~~~f~~~~pV~V~NDa~a 136 (370)
.|=- ..+... ..+...|++.++ +||+..+....
T Consensus 62 lP~~~dg~~~~~~~~~~~f~~~l~~~~~--i~V~~~DEr~T 100 (140)
T d1vhxa_ 62 FPKNMNGTVGPRGEASQTFAKVLETTYN--VPVVLWDERLT 100 (140)
T ss_dssp CCCCBTTBCCHHHHHHHHHHHHHHHHHC--SCEEEECCSSC
T ss_pred cccccCCcchhHHHHHHHHHHHhccCCC--ccEEEeecccC
Confidence 9943 222222 367788888887 89988766543
|
| >d1czan4 c.55.1.3 (N:671-913) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.029 Score=49.22 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..|.+|+.+++..+.........-.|-+-|++.+.++.| .+.+++.+++..|..+ +.+
T Consensus 151 ~i~~~V~~RAA~L~Aa~iaail~~~~~~~~~~~~~~~V~~dGSv~~~~p~f--~~~~~~~l~~l~~~~~--------i~l 220 (243)
T d1czan4 151 TVCGVVSRRAAQLCGAGMAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHF--SRIMHQTVKELSPKCN--------VSF 220 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEECHHHHHCTTH--HHHHHHHHHHHSTTEE--------EEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCccEEEEECcceecCchH--HHHHHHHHHHhCCCCc--------EEE
Confidence 456678999999999999999998863111111123588899999999998 9999999999777543 555
Q ss_pred cccccccccccccceeE
Q 017527 333 WHSCDQASANCCGAALC 349 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~~ 349 (370)
..++++. ..|||-++
T Consensus 221 ~~~~DGS--g~GAAl~A 235 (243)
T d1czan4 221 LLSEDGS--GKGAALIT 235 (243)
T ss_dssp EECSSCS--HHHHHHHH
T ss_pred EEccCcc--HHHHHHHH
Confidence 5666555 77776543
|
| >d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Mammalian type I hexokinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.023 Score=49.86 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCccccc
Q 017527 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPHW 333 (370)
Q Consensus 254 ~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~~ 333 (370)
.|..+.+|+++..+-+++.+++.++........+-.|-+-|++.+.++.| .+.+++.+++..|..+ ..+.
T Consensus 152 i~~~v~~RAA~L~Aa~iaail~~~~~~~~~~~~~~~Va~dGSv~~~~p~f--~~~~~~~l~~l~~~~~--------v~~~ 221 (243)
T d1czan2 152 VCTIVSFRSANLVAATLGAILNRLRDNKGTPRLRTTVGVDGSLYKTHPQY--SRRFHKTLRRLVPDSD--------VRFL 221 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEECHHHHHCSSH--HHHHHHHHHHHCTTEE--------EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcceEEEEechhhhhCchH--HHHHHHHHHHHCCCCc--------eEEE
Confidence 57788899999999999999998852111111223688899999999998 9999999999887543 5555
Q ss_pred ccccccccccccceeE
Q 017527 334 HSCDQASANCCGAALC 349 (370)
Q Consensus 334 ~~~~~~~~~~~~~~~~ 349 (370)
.++++. ..|||-++
T Consensus 222 ~~~DGS--g~GAAl~A 235 (243)
T d1czan2 222 LSESGS--GKGAAMVT 235 (243)
T ss_dssp ECTTCH--HHHHHHHH
T ss_pred EccCCc--HHHHHHHH
Confidence 556554 66775443
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=92.60 E-value=0.66 Score=35.78 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=35.1
Q ss_pred cCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 93 SAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 93 ~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
..+..+.|++|-.-+...+..+++..+.. +. -.|.+.|...||++|
T Consensus 90 ~~~~~~VItVPa~f~~~qR~at~~Aa~~A-Gl-~vv~li~EPtAAAiG 135 (137)
T d1jcea1 90 LFKPRVVIGVPIGITDVERRAILDAGLEA-GA-SKVFLIEEPMAAAIG 135 (137)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-SEEEEEEHHHHHHHH
T ss_pred ccccceEEEeecccCHHHHHHHHHHHHHc-CC-CEEEEeCCHHHHHhC
Confidence 46778899999987666666666666555 32 479999999999986
|
| >d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: CoaX-like domain: Type III pantothenate kinase, CoaX species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.41 E-value=0.24 Score=37.20 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=46.5
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
+.|.||+|-|++++++++. .+++........ .....+.+ ..... ..+..+. +
T Consensus 1 M~LliDiGNT~iK~~~~~~----------~~~~~~~~~~~~------~~~~~~~~-------~~~~~---~~~~~v~--i 52 (114)
T d2f9wa2 1 MILELDCGNSLIKWRVIEG----------AARSVAGGLAES------DDALVEQL-------TSQQA---LPVRACR--L 52 (114)
T ss_dssp EEEEEEECSSCEEEEEEET----------TTEEEEEEEESS------HHHHHHHH-------HHTTT---SCEEEEE--E
T ss_pred CEEEEEECCCeEEEEEEEC----------CeEEEEeeeecC------hHHHHHHH-------hhhcc---CCCceEE--E
Confidence 4789999999999999987 556555544331 22222221 11111 2345443 5
Q ss_pred cCCCChhhHHHHHHHHHhhCC
Q 017527 103 SGVNHPTDQQRILNWLRDIFP 123 (370)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~f~ 123 (370)
+.++.|.....+.+.+++.|.
T Consensus 53 ssVv~~~~~~~l~~~~~~~~~ 73 (114)
T d2f9wa2 53 VSVRSEQETSQLVARLEQLFP 73 (114)
T ss_dssp EECSCHHHHHHHHHHHHHHSS
T ss_pred EEecCHHHHHHHHHHHHHhcC
Confidence 667777777888999999887
|
| >d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=91.42 E-value=0.25 Score=42.78 Aligned_cols=75 Identities=19% Similarity=0.205 Sum_probs=52.2
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+.|+|||.||+++++... .++.-+++.....++.-.. +.-.=++.+.+.|++++++++...+++..|-+.-
T Consensus 2 ii~glDIGtski~~~v~~~------~~~~~~ilg~g~~~s~GiK--G~I~ni~~~~~aI~~av~~A~~~~~~i~~i~in~ 73 (239)
T d1nbwa2 2 LIAGIDIGNATTEVALASD------YPQARAFVASGIVATTGMK--GTRDNIAGTLAALEQALAKTPWSMSDVSRIYLNE 73 (239)
T ss_dssp EEEEEEECSSEEEEEEEEC------BTTBCCCCEEEEEECCSST--TSGGGHHHHHHHHHHHHTTSSCCGGGEEEEEEEE
T ss_pred EEEEEEcCCCeEEEEEEEE------cCCCEEEEEEEeecCCCCc--ceEECHHHHHHHHHHHHHHhccccccceEEEecC
Confidence 6899999999999999976 2223478887777665442 3222355667778888888887777777776655
Q ss_pred cCC
Q 017527 103 SGV 105 (370)
Q Consensus 103 pG~ 105 (370)
+.+
T Consensus 74 a~~ 76 (239)
T d1nbwa2 74 AAP 76 (239)
T ss_dssp CCC
T ss_pred Ccc
Confidence 444
|
| >d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=90.56 E-value=0.39 Score=40.47 Aligned_cols=75 Identities=17% Similarity=0.092 Sum_probs=52.4
Q ss_pred cEEEEEEcCccceEEEEEeCCCCCCCCCCCC--CeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEE
Q 017527 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (370)
Q Consensus 22 ~~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g--~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~Ig 99 (370)
.|+.|||||-+.+.+++.... + .| +++++...++.-.. +-.+=+.-+.+.+++++++.+.+.+++.-|-
T Consensus 2 ~~IaGiDIGNstTEvala~v~-----~--~g~~~fl~S~i~~TTGiK--GT~~Ni~Gv~~aL~~al~k~g~~~~d~~lIr 72 (241)
T d2d0oa2 2 RYIAGIDIGNSSTEVALATLD-----E--AGALTITHSALAETTGIK--GTLRNVFGIQEALALVARGAGIAVSDISLIR 72 (241)
T ss_dssp EEEEEEEECSSEEEEEEEEEC-----T--TCCEEEEEEEEEECCSST--TSTTHHHHHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ceEEEEecCcchhhhheeeec-----C--CCcEEEEecccccccccc--ccHHHHHHHHHHHHHHHHHcCCCHHHhheee
Confidence 589999999999999998751 1 34 46666666665442 3223345566778888889999888888777
Q ss_pred EeecCC
Q 017527 100 LAVSGV 105 (370)
Q Consensus 100 IgvpG~ 105 (370)
|-=+-|
T Consensus 73 iNEAtP 78 (241)
T d2d0oa2 73 INEATP 78 (241)
T ss_dssp EEECCS
T ss_pred ecccCC
Confidence 654433
|
| >d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]
Probab=89.93 E-value=0.086 Score=46.54 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..+.+|+++..+-+++.+++..+. .+-.|-+.|++.+.++.| .+.+++.+++.........|. ..+.+
T Consensus 159 ~i~~~V~~RaA~L~Aa~iaai~~~~~~------~~~~VavDGSv~~~~p~f--~~~~~~~l~~l~~~~~~~~~~-~~v~l 229 (262)
T d1ig8a2 159 RLSELIGARAARLSVCGIAAICQKRGY------KTGHIAADGSVYNRYPGF--KEKAANALKDIYGWTQTSLDD-YPIKI 229 (262)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHTC------SSEEEEEESHHHHHSTTH--HHHHHHHHHHHHTCCCCSGGG-CSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC------CCcEEEEeeeeeecCccH--HHHHHHHHHHHhhhhhccCCC-ceEEE
Confidence 678889999999999999999999884 356788899999999998 899999998866443211111 13455
Q ss_pred ccccccccccccccee
Q 017527 333 WHSCDQASANCCGAAL 348 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~~ 348 (370)
..++++. ..|||-+
T Consensus 230 ~~a~DGS--g~GAAl~ 243 (262)
T d1ig8a2 230 VPAEDGS--GAGAAVI 243 (262)
T ss_dssp EECCCTT--THHHHHH
T ss_pred EEccCcc--HHHHHHH
Confidence 5556555 7787643
|
| >d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Hexokinase domain: Hexokinase species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]
Probab=89.83 E-value=0.15 Score=44.24 Aligned_cols=78 Identities=9% Similarity=0.106 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCCcccc
Q 017527 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVCIWPH 332 (370)
Q Consensus 253 ~~A~~il~~a~~~Lg~~l~~vv~~l~~~~~~~~~P~~VVlgGgv~~~~~~~~l~~~v~~~l~~~~p~~~~~~p~~~~~~~ 332 (370)
..|..|.+|+++..+-+++.+++..+. .+-.|-+-|++.+.++.| .+.+++.+++..+.- ..+.+
T Consensus 155 ~i~~~V~~RaA~L~Aa~iaai~~~~~~------~~~~Vg~dGS~~~~~p~y--~~~l~~~l~~l~~~~-------~~i~l 219 (237)
T d1bdga2 155 YACEMVVKRAAYLAGAGIACILRRINR------SEVTVGVDGSLYKFHPKF--CERMTDMVDKLKPKN-------TRFCL 219 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC------SEEEEEEESHHHHHCTTH--HHHHHHHHHHHSCTT-------CEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC------CceEEEEeCchhhcChhH--HHHHHHHHHHHcCCC-------ceEEE
Confidence 456688999999999999999999983 345778889999999998 999999998865432 13555
Q ss_pred cccccccccccccce
Q 017527 333 WHSCDQASANCCGAA 347 (370)
Q Consensus 333 ~~~~~~~~~~~~~~~ 347 (370)
..++++. ..|||-
T Consensus 220 ~~a~DGS--g~GAAl 232 (237)
T d1bdga2 220 RLSEDGS--GKGAAA 232 (237)
T ss_dssp EECTTHH--HHHHHH
T ss_pred EEccCCc--HHHHHH
Confidence 5566554 666653
|
| >d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: Putative Holliday junction resolvase RuvX domain: Hypothetical protein, YqgF homologue species: Thermus thermophilus [TaxId: 274]
Probab=89.34 E-value=0.84 Score=33.61 Aligned_cols=85 Identities=11% Similarity=0.057 Sum_probs=51.7
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+||+|.|..++=+++.|. .+.+ +.......+ .+.+..++.|.+.+++ .++..+-||.
T Consensus 2 riLglD~G~kriGiAisd~---------~~~~-a~pl~~i~~---~~~~~~~~~l~~ii~e---------~~i~~iVvGl 59 (98)
T d1iv0a_ 2 RVGALDVGEARIGLAVGEE---------GVPL-ASGRGYLVR---KTLEEDVEALLDFVRR---------EGLGKLVVGL 59 (98)
T ss_dssp CEEEEEESSSEEEEEEECS---------CCSS-CCCEEEEEC---CCHHHHHHHHHHHHHH---------HTCCEEEEEC
T ss_pred cEEEEEcCCCEEEEEEecC---------CCCe-EcceEEEEC---CCchHHHHHHHHHHHh---------hccceeEccc
Confidence 3899999999999999987 3332 211111111 1345556666655554 3578999999
Q ss_pred cCCCC----hh--hHHHHHHHHHhhCCCCceEEEeC
Q 017527 103 SGVNH----PT--DQQRILNWLRDIFPGNVRLYVHN 132 (370)
Q Consensus 103 pG~~~----~~--~~~~l~~~L~~~f~~~~pV~V~N 132 (370)
|=-.+ +. .-..+.+.|++ ++ +||+..+
T Consensus 60 P~~~dG~~~~~~~~v~~f~~~L~~-~~--lpv~~~D 92 (98)
T d1iv0a_ 60 PLRTDLKESAQAGKVLPLVEALRA-RG--VEVELWD 92 (98)
T ss_dssp CCCCCSSSCCCSSTTHHHHHHHHH-TT--CEEEEEC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhh-CC--CCEEEEc
Confidence 94322 11 12467777765 45 8988654
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.90 E-value=2.5 Score=34.05 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~-~~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
.++++...+...+.+..++ .+ .++..+.|++|-.-+...+..+++..+.. +. -.+.+.|+..||+++
T Consensus 112 s~~el~a~~l~~l~~~a~~~~~---~~~~~~VitvPa~f~~~qr~~~~~Aa~~A-Gl-~~~~li~EP~AAAl~ 179 (185)
T d1bupa1 112 YPEEVSSMVLTKMKEIAEAYLG---KTVTNAVVTVPAYFNDSQRQATKDAGTIA-GL-NVLRIINEPTAAAIA 179 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT---SCCCEEEEEECTTCCHHHHHHHHHHHHHT-TC-EEEEEEEHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcCcEEEEECCCCCHHHHHHHHHHHHHc-CC-CeEEEEcCHHHHHHH
Confidence 4566655555544444432 23 35677889999765554555666665544 42 357899999999884
|
| >d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: YeaZ-like domain: Hypothetical protein TM0874 species: Thermotoga maritima [TaxId: 2336]
Probab=85.86 E-value=4.9 Score=29.21 Aligned_cols=94 Identities=12% Similarity=-0.001 Sum_probs=62.9
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCccccCHHHHHHHHHHHHHHHHHHcCCCccCcceEEEee
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~IgIgv 102 (370)
.+|++|-- +++.+++.+. .++ ........+.+ .+.|...|++++++++...+++..|.++.
T Consensus 2 ~iLaidTS-~~~sval~~~----------~~~-~~~~~~~~~~h-------s~~l~~~i~~~l~~~~~~~~di~~i~v~~ 62 (103)
T d2a6aa1 2 NVLALDTS-QRIRIGLRKG----------EDL-FEISYTGEKKH-------AEILPVVVKKLLDELDLKVKDLDVVGVGI 62 (103)
T ss_dssp EEEEEECS-SSEEEEEEET----------TEE-EEEEEESCGGG-------GGHHHHHHHHHHHHHTCCGGGCSEEEEEC
T ss_pred cEEEEEcC-cccEEEEEEC----------CEE-EEEeccCchHH-------HHHHHHHHHHHHHHcCCCHHHhHHHhhcC
Confidence 48999975 7788888765 344 44333322221 24567778889999999999999998875
Q ss_pred cCCCChhh---HHHHHHHHHhhCCCCceEEEeChHHHHH
Q 017527 103 SGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAAL 138 (370)
Q Consensus 103 pG~~~~~~---~~~l~~~L~~~f~~~~pV~V~NDa~aa~ 138 (370)
||..-.. ...+.+-|...++ .|++=.|--.+.+
T Consensus 63 -GPGsfTglRig~s~akgla~~~~--ip~~gis~l~~lA 98 (103)
T d2a6aa1 63 -GPGGLTGLRVGIATVVGLVSPYD--IPVAPLNSFEMTA 98 (103)
T ss_dssp -CSSCHHHHHHHHHHHHHHHGGGT--CCEEEECHHHHHH
T ss_pred -CCCcchhHHHHHHHHHHHHHHcC--CCEEEeCHHHHHH
Confidence 6654332 2356667777776 8998777655433
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=83.50 E-value=2.6 Score=33.83 Aligned_cols=67 Identities=15% Similarity=0.035 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHHHHHc-CCCccCcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHHHHh
Q 017527 69 GEDAARETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (370)
Q Consensus 69 ~~~~~~~~l~~~i~~~l~~~-~~~~~~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa~~g 140 (370)
+++++...+...+.+..++. + .++..+.|++|-.-+......+++..+.. +. ..+.+.|+..||+++
T Consensus 109 s~~~l~a~~L~~l~~~a~~~~~---~~~~~~VitVPa~f~~~~r~~l~~Aa~~A-G~-~~~~li~EP~AAAl~ 176 (183)
T d1dkgd1 109 APPQISAEVLKKMKKTAEDYLG---EPVTEAVITVPAYFNDAQRQATKDAGRIA-GL-EVKRIINEPTAAALA 176 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS---SCCCEEEECBCTTCCHHHHHHHHHHHHHT-TC-EESCCCBHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHHc-CC-CEEEEecCHHHHHHH
Confidence 45555555555554443332 3 35778889999986665666677766654 42 245699999999885
|
| >d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=83.15 E-value=3 Score=31.76 Aligned_cols=102 Identities=10% Similarity=0.076 Sum_probs=63.6
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCCCc------cccCHHHHHHHHHHHHHHHHH---HcCCCcc
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH------NSVGEDAARETIEKVMADALL---KSGSNRS 93 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~n~------~~~~~~~~~~~l~~~i~~~l~---~~~~~~~ 93 (370)
-+-.||+|...+++.+++.. +..-+++.+.+.++.-. ...+ ++.++++.+++.++.+ +.++ +
T Consensus 4 riavIDIGSNsirl~I~~~~------~~~~~~l~~~~~~~~Lg~~~~~~g~ls-~~~i~~~~~~l~~f~~~~~~~~v--~ 74 (126)
T d1t6ca1 4 RVASIDIGSYSVRLTIAQIK------DGKLSIILERGRITSLGTKVKETGRLQ-EDRIEETIQVLKEYKKLIDEFKV--E 74 (126)
T ss_dssp EEEEEEECSSEEEEEEEEEE------TTEEEEEEEEEEECCTTTTHHHHSSCC-HHHHHHHHHHHHHHHHHHHHTTC--S
T ss_pred EEEEEEEccceEEEEEEEec------CCcceeeeeeeEEEEcccCccccCCCC-HHHHHHHHHHHHHHHHHHHhcCc--c
Confidence 36789999999999999871 11123444444333100 0012 2446666666665543 3443 2
Q ss_pred CcceEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 94 ~v~~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
+ -.+++.+.+=+..+...+.+.+++.++ .++.|-+.-.=|
T Consensus 75 ~--~~~vaTsA~R~A~N~~~~~~~i~~~tg--i~i~Iisg~eEa 114 (126)
T d1t6ca1 75 R--VKAVATEAIRRAKNAEEFLERVKREVG--LVVEVITPEQEG 114 (126)
T ss_dssp E--EEEEECHHHHTSTTHHHHHHHHHHHTC--CCEEECCHHHHH
T ss_pred c--eEEehhHHHHhCcCHHHHHHHHHHHHC--CCeEEeCHHHHH
Confidence 3 357777777555677889999999998 788888776644
|
| >d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=82.47 E-value=3.9 Score=30.95 Aligned_cols=103 Identities=10% Similarity=0.115 Sum_probs=64.3
Q ss_pred EEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccCc-c
Q 017527 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAV-R 96 (370)
Q Consensus 24 vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~------n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v-~ 96 (370)
+..||+|...+|+.+++.. +..-+++.+.+.++. ..... .++.++.+.+++.++.+.... ..+ .
T Consensus 2 ~A~IDiGSNsirl~I~~~~------~~~~~~l~~~~~~~rLg~~~~~~g~l-~~~~i~~~~~~l~~f~~~~~~--~~v~~ 72 (124)
T d1u6za2 2 FAAVDLGSNSFHMVIARVV------DGAMQIIGRLKQRVHLADGLGPDNML-SEEAMTRGLNCLSLFAERLQG--FSPAS 72 (124)
T ss_dssp EEEEEECSSCEEEEEEEEE------TTEEEEEEEEEECCCTGGGBCTTCCB-CHHHHHHHHHHHHHHHHHTTT--CCGGG
T ss_pred EEEEEEccceEEEEEEEec------CCCeeEeeeeeEEeehhhhccccCCc-CHHHHHHHHHHHHHHHHHHHh--cCcce
Confidence 4679999999999998861 111234444443321 11111 345577777777777665432 223 2
Q ss_pred eEEEeecCCCChhhHHHHHHHHHhhCCCCceEEEeChHHHH
Q 017527 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA 137 (370)
Q Consensus 97 ~IgIgvpG~~~~~~~~~l~~~L~~~f~~~~pV~V~NDa~aa 137 (370)
-.++|.+.+=+..+...+.+.+++.++ .++.|-+...=|
T Consensus 73 i~~vaTsA~R~A~N~~~~~~~i~~~~g--i~i~ilsg~eEa 111 (124)
T d1u6za2 73 VCIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEA 111 (124)
T ss_dssp EEEEECHHHHHCTTHHHHHHHHTTTCS--SCEEECCHHHHH
T ss_pred ehhhHHHHHHcCccHHHHHHHHHHHhC--CCEEEeCHHHHH
Confidence 346777666444567789999999998 888887766533
|
| >d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Acetokinase-like domain: butyrate kinase 2 species: Thermotoga maritima [TaxId: 2336]
Probab=81.15 E-value=0.63 Score=38.04 Aligned_cols=66 Identities=21% Similarity=0.155 Sum_probs=41.4
Q ss_pred EEEEEEcCccceEEEEEeCCCCCCCCCCCCCeEEEEEecCC-----CccccCHHHHHHHHHHHHHHHHHHcCCCccCcce
Q 017527 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-----NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (370)
Q Consensus 23 ~vlGVDiGgT~i~~~l~d~~~~~~~~~~~g~il~~~~~~~~-----n~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~v~~ 97 (370)
-+|.|..|.|++|+++++. .+.+.+....-. ..... .+ -.+...++|.+++++.+.+.+++.+
T Consensus 3 kILViN~GSSSlK~alf~~----------~~~~~~~~i~~~~~e~~~~~~i-~d-~~~~~~~~i~~~L~~~~~~~~~i~a 70 (172)
T d1saza1 3 RILTINPGSTSTKLSIFED----------ERMVKMQNFSHSPDELGRFQKI-LD-QLEFREKIARQFVEETGYSLSSFSA 70 (172)
T ss_dssp EEEEEEECSSEEEEEEEET----------TEEEEEEEEECCHHHHHTCSSG-GG-GHHHHHHHHHHHHHTTTCCGGGCSE
T ss_pred EEEEEcCChHhheEEEEeC----------CCceeEEEEEEccccccccCcc-cc-hHHHHHHHHHHHHHHcCCChhcCeE
Confidence 5899999999999999987 344444332110 00000 01 1233456677788888887788887
Q ss_pred EEE
Q 017527 98 VCL 100 (370)
Q Consensus 98 IgI 100 (370)
||-
T Consensus 71 vgh 73 (172)
T d1saza1 71 FVS 73 (172)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|