Citrus Sinensis ID: 017530

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGVIFSV
ccccccccccccccccccEEcccccEEEEEcccEEEEccccccccccccccEEEEEEEEEEEEEccccccEEEEccccccHHHcccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHccc
ccccccccccccccccccEcccccEEEEEcccEEEEEccccccccccccccEEEEEEEEEEEEccccccEEEEEEHHHEEEEcccHcccccccccccEEEEEccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHcccEEccHHHHHHHHHHHHHccccEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHccc
masnnfflpasvtssgrpvlvpnevecnllsnvdiehdqddavsfpplksghfiLTTHRLLFLSsscsstavaiplSAITHIFsskrslksvfhsprfrfqvsatpdnrifdsdpgrvtgLRSVVITVVVRGKGDWELFLSKMWECWRgrawawettpsetgpasasaSASLyasdgsvrmVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLagsssqsnsandeelgskEEMQDWLLSVgivspvtkesagALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFnrargtalispddlsqacslwekfdvpvmlrkfdsgvmaiqskshsdeeSMMERIRFLGVIFSV
masnnfflpasvtssgrpvlVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFrfqvsatpdnrifdsdpgrvtglrsVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLlagsssqsnsaNDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAiqskshsdeesmmERIRFLGVIFSV
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPasasasaslyasDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGVIFSV
*****************PVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET***********************RMVGVGGLL*****************************************************************DWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMA***************IRFLGVIF**
***NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIF***************************************SVVITVVVRGKGDWELFLSKMWECWRGRA********************************VG*******************AFQDLNALMNKAKEMVML****************************************************HQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGVIFS*
MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWE***************SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQ*********************EEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMA***********MMERIRFLGVIFSV
*******LPA*VTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPD******DPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETT********************SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAG****************E*MQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGVIFSV
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MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDxxxxxxxxxxxxxxxxxxxxxLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFLGVIFSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query370 2.2.26 [Sep-21-2011]
Q9FF81440 Vacuolar protein sorting- yes no 0.932 0.784 0.653 1e-131
Q91XD6386 Vacuolar protein-sorting- yes no 0.794 0.761 0.355 4e-48
Q7ZVK4382 Vacuolar protein-sorting- yes no 0.770 0.746 0.369 6e-48
P0C0A2386 Vacuolar protein-sorting- yes no 0.794 0.761 0.352 1e-47
A5PK00386 Vacuolar protein-sorting- yes no 0.794 0.761 0.348 2e-46
Q86VN1386 Vacuolar protein-sorting- yes no 0.794 0.761 0.348 2e-46
Q6DDF4388 Vacuolar protein-sorting- N/A no 0.743 0.708 0.373 4e-46
Q54T18611 Vacuolar protein-sorting- yes no 0.467 0.283 0.446 4e-36
Q9VU87399 Vacuolar protein-sorting- yes no 0.848 0.786 0.311 4e-31
O43038467 Vacuolar protein-sorting- yes no 0.570 0.451 0.217 2e-10
>sp|Q9FF81|VPS36_ARATH Vacuolar protein sorting-associated protein 36 OS=Arabidopsis thaliana GN=VPS36 PE=1 SV=1 Back     alignment and function desciption
 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 240/367 (65%), Positives = 287/367 (78%), Gaps = 22/367 (5%)

Query: 1   MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
           +A    F  A VT+SGRPVL  NEVEC LLS++DI+  +DD   F  L+SG+ ILTTHRL
Sbjct: 8   IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66

Query: 61  LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
           +++ S S  S   +IPLSA+THI+S K+S+KS+FHSPR RFQ           +DPG   
Sbjct: 67  IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112

Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASASASAS--LYASDG 177
              S+V+T+V RGKGD++ FLSK+WECWRGRAW  E         S S + +  LY +DG
Sbjct: 113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169

Query: 178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
           +VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+  SSQ
Sbjct: 170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229

Query: 238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
           + S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct: 230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289

Query: 298 NLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESM 357
           +L D+Y  FNRARGT LISPDDL QAC+LWEKFDVPVMLRKFDSGVM IQ+KSHSDEE +
Sbjct: 290 SLTDMYYHFNRARGTELISPDDLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEE-V 348

Query: 358 MERIRFL 364
           M RIR L
Sbjct: 349 MSRIRML 355
Component of the ESCRT-II complex (endosomal sorting complex required for transport II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q91XD6|VPS36_MOUSE Vacuolar protein-sorting-associated protein 36 OS=Mus musculus GN=Vps36 PE=1 SV=1 Back     alignment and function description
>sp|Q7ZVK4|VPS36_DANRE Vacuolar protein-sorting-associated protein 36 OS=Danio rerio GN=vps36 PE=2 SV=1 Back     alignment and function description
>sp|P0C0A2|VPS36_RAT Vacuolar protein-sorting-associated protein 36 OS=Rattus norvegicus GN=Vps36 PE=1 SV=1 Back     alignment and function description
>sp|A5PK00|VPS36_BOVIN Vacuolar protein-sorting-associated protein 36 OS=Bos taurus GN=VPS36 PE=2 SV=1 Back     alignment and function description
>sp|Q86VN1|VPS36_HUMAN Vacuolar protein-sorting-associated protein 36 OS=Homo sapiens GN=VPS36 PE=1 SV=1 Back     alignment and function description
>sp|Q6DDF4|VPS36_XENLA Vacuolar protein-sorting-associated protein 36 OS=Xenopus laevis GN=vps36 PE=2 SV=1 Back     alignment and function description
>sp|Q54T18|VPS36_DICDI Vacuolar protein-sorting-associated protein 36 OS=Dictyostelium discoideum GN=vps36 PE=3 SV=1 Back     alignment and function description
>sp|Q9VU87|VPS36_DROME Vacuolar protein-sorting-associated protein 36 OS=Drosophila melanogaster GN=Vps36 PE=2 SV=2 Back     alignment and function description
>sp|O43038|VPS36_SCHPO Vacuolar protein-sorting-associated protein 36 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps36 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
255554859439 Vacuolar protein sorting protein, putati 0.932 0.785 0.690 1e-138
449458079439 PREDICTED: vacuolar protein sorting-asso 0.935 0.788 0.665 1e-132
449521443345 PREDICTED: vacuolar protein sorting-asso 0.913 0.979 0.671 1e-131
15238374440 vacuolar protein sorting-associated prot 0.932 0.784 0.653 1e-129
359487067441 PREDICTED: vacuolar protein sorting-asso 0.943 0.791 0.659 1e-128
297810583436 vacuolar protein sorting 36 family prote 0.924 0.784 0.648 1e-128
224110074446 predicted protein [Populus trichocarpa] 0.918 0.762 0.658 1e-126
356526368449 PREDICTED: vacuolar protein sorting-asso 0.954 0.786 0.662 1e-126
359487001 532 PREDICTED: LOW QUALITY PROTEIN: vacuolar 0.943 0.656 0.651 1e-125
357515701442 Vacuolar protein sorting protein [Medica 0.918 0.769 0.651 1e-121
>gi|255554859|ref|XP_002518467.1| Vacuolar protein sorting protein, putative [Ricinus communis] gi|223542312|gb|EEF43854.1| Vacuolar protein sorting protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  496 bits (1276), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/372 (69%), Positives = 297/372 (79%), Gaps = 27/372 (7%)

Query: 2   ASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLL 61
            +NNFF  AS+TSSGRPVL+PNEVEC LLS VD+E D+D   +F PLKSG  ILTTHRLL
Sbjct: 3   GNNNFFPSASLTSSGRPVLLPNEVECQLLSAVDLE-DEDVNANFSPLKSGVLILTTHRLL 61

Query: 62  FLSSSC--SSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
           +L S+   +STA AIPLS IT IFSSK+S+KS+FHSPR RFQVS                
Sbjct: 62  WLPSNSISNSTATAIPLSFITCIFSSKKSIKSIFHSPRIRFQVSVHS------------- 108

Query: 120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPAS-------ASASASL 172
             +S+V+T+V+RGKGD + FL+K  E W GRAW  +T  S +G ++       +S S   
Sbjct: 109 --KSLVVTLVLRGKGDSDGFLAKFLESWNGRAWETDTGGSSSGDSAPTLVSGASSNSGGF 166

Query: 173 YASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLA 232
           Y+SDGSVRMVGV G+LRKEQ+MWESTD+SLQEAFQDLNALM+KAKEM+ LAEKMRQKLL+
Sbjct: 167 YSSDGSVRMVGVAGILRKEQQMWESTDKSLQEAFQDLNALMSKAKEMMTLAEKMRQKLLS 226

Query: 233 GSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLER 292
           GS+S S   N EE+GSKEEMQDWLLSVGI+SPVTKESAGALYHQQLSRQLADFVKIPLER
Sbjct: 227 GSNSHSADTN-EEMGSKEEMQDWLLSVGIISPVTKESAGALYHQQLSRQLADFVKIPLER 285

Query: 293 AGGMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHS 352
           AGGMINLID+YCLFNRARGT LISP+DL QAC+LWEKFDVPVMLRKFDSGVM IQ+KSHS
Sbjct: 286 AGGMINLIDIYCLFNRARGTELISPEDLLQACTLWEKFDVPVMLRKFDSGVMVIQNKSHS 345

Query: 353 DEESMMERIRFL 364
           DEE +  RI+ L
Sbjct: 346 DEE-IFARIKAL 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449458079|ref|XP_004146775.1| PREDICTED: vacuolar protein sorting-associated protein 36-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449521443|ref|XP_004167739.1| PREDICTED: vacuolar protein sorting-associated protein 36-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|15238374|ref|NP_196112.1| vacuolar protein sorting-associated protein 36 [Arabidopsis thaliana] gi|75170174|sp|Q9FF81.1|VPS36_ARATH RecName: Full=Vacuolar protein sorting-associated protein 36; Short=AtVPS36; AltName: Full=ESCRT-II complex subunit VPS36 gi|10178031|dbj|BAB11514.1| unnamed protein product [Arabidopsis thaliana] gi|18175694|gb|AAL59912.1| unknown protein [Arabidopsis thaliana] gi|20465997|gb|AAM20220.1| unknown protein [Arabidopsis thaliana] gi|332003421|gb|AED90804.1| vacuolar protein sorting-associated protein 36 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359487067|ref|XP_002270954.2| PREDICTED: vacuolar protein sorting-associated protein 36-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810583|ref|XP_002873175.1| vacuolar protein sorting 36 family protein [Arabidopsis lyrata subsp. lyrata] gi|297319012|gb|EFH49434.1| vacuolar protein sorting 36 family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224110074|ref|XP_002315405.1| predicted protein [Populus trichocarpa] gi|222864445|gb|EEF01576.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356526368|ref|XP_003531790.1| PREDICTED: vacuolar protein sorting-associated protein 36-like [Glycine max] Back     alignment and taxonomy information
>gi|359487001|ref|XP_003633505.1| PREDICTED: LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 36-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357515701|ref|XP_003628139.1| Vacuolar protein sorting protein [Medicago truncatula] gi|355522161|gb|AET02615.1| Vacuolar protein sorting protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query370
TAIR|locus:2175274440 AT5G04920 "AT5G04920" [Arabido 0.932 0.784 0.651 3.8e-117
DICTYBASE|DDB_G0282045611 vps36 "vacuolar protein sortin 0.470 0.284 0.459 1.6e-39
ZFIN|ZDB-GENE-030131-7753382 vps36 "vacuolar protein sortin 0.510 0.494 0.443 1.6e-38
MGI|MGI:1917410386 Vps36 "vacuolar protein sortin 0.656 0.629 0.376 4.3e-38
UNIPROTKB|Q86VN1386 VPS36 "Vacuolar protein-sortin 0.656 0.629 0.372 5.5e-38
UNIPROTKB|Q6DDF4388 vps36 "Vacuolar protein-sortin 0.662 0.631 0.372 8.9e-38
UNIPROTKB|F1RMD6386 VPS36 "Uncharacterized protein 0.656 0.629 0.372 1.5e-37
RGD|1309754386 Vps36 "vacuolar protein sortin 0.656 0.629 0.372 1.5e-37
UNIPROTKB|P0C0A2386 Vps36 "Vacuolar protein-sortin 0.656 0.629 0.372 1.5e-37
UNIPROTKB|F1MT69386 VPS36 "Vacuolar protein-sortin 0.656 0.629 0.372 2.4e-37
TAIR|locus:2175274 AT5G04920 "AT5G04920" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
 Identities = 239/367 (65%), Positives = 284/367 (77%)

Query:     1 MASNNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRL 60
             +A    F  A VT+SGRPVL  NEVEC LLS++DI+  +DD   F  L+SG+ ILTTHRL
Sbjct:     8 IAIGGLFENAEVTTSGRPVLRRNEVECFLLSSIDID-SEDDPPRFTALRSGNLILTTHRL 66

Query:    61 LFL-SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVT 119
             +++ S S  S   +IPLSA+THI+S K+S+KS+FHSPR RFQ           +DPG   
Sbjct:    67 IWIPSQSNESVPSSIPLSAVTHIYSHKKSIKSMFHSPRIRFQ-----------ADPG--- 112

Query:   120 GLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWET-TPSETGPXXXXXXXXXXXX-DG 177
                S+V+T+V RGKGD++ FLSK+WECWRGRAW  E  + SET               DG
Sbjct:   113 ---SIVVTIVFRGKGDFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDG 169

Query:   178 SVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQ 237
             +VRMVG+ G+LRKEQE WESTD+SLQ+AFQDLNALM+KAKEMV LAEKMRQKLL+  SSQ
Sbjct:   170 TVRMVGLAGILRKEQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQ 229

Query:   238 SNSANDEELGSKEEMQDWLLSVGIVSPVTKESAGALYHQQLSRQLADFVKIPLERAGGMI 297
             + S +DEE+GSKEEMQ W+LSVGI+SPVTKESAGALYHQ+LSRQLADFV+IPLE+AGGMI
Sbjct:   230 NGSTDDEEMGSKEEMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMI 289

Query:   298 NLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESM 357
             +L D+Y  FNRARGT LISPDDL QAC+LWEKFDVPVMLRKFDSGVM IQ+KSHSDEE +
Sbjct:   290 SLTDMYYHFNRARGTELISPDDLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEE-V 348

Query:   358 MERIRFL 364
             M RIR L
Sbjct:   349 MSRIRML 355
GO:0005215 "transporter activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0000814 "ESCRT II complex" evidence=ISS
GO:0005515 "protein binding" evidence=IPI
DICTYBASE|DDB_G0282045 vps36 "vacuolar protein sorting 36" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-7753 vps36 "vacuolar protein sorting 36 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1917410 Vps36 "vacuolar protein sorting 36 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q86VN1 VPS36 "Vacuolar protein-sorting-associated protein 36" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DDF4 vps36 "Vacuolar protein-sorting-associated protein 36" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|F1RMD6 VPS36 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1309754 Vps36 "vacuolar protein sorting 36 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P0C0A2 Vps36 "Vacuolar protein-sorting-associated protein 36" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1MT69 VPS36 "Vacuolar protein-sorting-associated protein 36" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FF81VPS36_ARATHNo assigned EC number0.65390.93240.7840yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT5G04920
vacuolar protein sorting 36 family protein / VPS36 family protein; vacuolar protein sorting 36 family protein / VPS36 family protein; FUNCTIONS IN- transporter activity; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT II complex; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- EAP30 (InterPro-IPR007286); Has 235 Blast hits to 233 proteins in 112 species- Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 67; Plants - 24; Viruses - 0; Other Eukaryotes - 31 (source- NCBI BLink). ; Component of the ESCRT-II complex (endosomal sor [...] (440 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
VPS20.2
VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2); VACUOLAR PROTEIN SORTING-ASSOCIATED [...] (216 aa)
    ••• 0.999
VPS25
VPS25; VPS25; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- vesicle-mediated transport [...] (179 aa)
    ••• 0.998
VPS20.1
VPS20.1; VPS20.1; INVOLVED IN- vesicle-mediated transport, N-terminal protein myristoylation; L [...] (219 aa)
    ••• 0.998
VPS22
VPS22; VPS22; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- vesicle-mediated transport [...] (250 aa)
    ••• 0.997
VPS24.1
VPS24.1; VPS24.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRE [...] (229 aa)
     •• 0.991
VPS2.1
VPS2.1; VPS2.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRESS [...] (225 aa)
    ••• 0.991
VPS24.2
VPS24.2; VPS24.2; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; CONTA [...] (200 aa)
     •• 0.987
ELC
ELC; ubiquitin binding; Mutants of this gene were initially identified because of the trichome [...] (398 aa)
   •• • 0.983
SNF7.1
SNF7.1; SNF7.1; INVOLVED IN- vesicle-mediated transport; LOCATED IN- ESCRT III complex; EXPRESS [...] (219 aa)
     •• 0.976
ELC-Like
ELC-Like (ELCH-like); small conjugating protein ligase; ELCH-like (ELC-Like); FUNCTIONS IN- sma [...] (368 aa)
    • • 0.970

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
pfam04157219 pfam04157, EAP30, EAP30/Vps36 family 5e-50
pfam1160593 pfam11605, Vps36_ESCRT-II, Vacuolar protein sortin 3e-11
cd13227126 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like 1e-04
cd13226128 cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like 0.002
>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family Back     alignment and domain information 
 Score =  166 bits (423), Expect = 5e-50
 Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 13/185 (7%)

Query: 182 VGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSA 241
           VG+ G+ R  +E  +  D  LQ AF+DL ALM +AK+ V L E   +K  +   +     
Sbjct: 1   VGIAGIERSREEQRKYNDLGLQLAFEDLEALMKQAKDFVELLESFAKKHKSEIKANPEF- 59

Query: 242 NDEELGSKEEMQDWLLSVGIVSPVTKE----SAGALYHQQLSRQLADFVKIPLERAGGMI 297
                  + + Q    S+G+    +K+         ++ +L+ Q+ +     L+  GG+I
Sbjct: 60  -------RAQFQSMCASLGVDPLASKKGSVLGGVGDFYYELAVQIVEICLATLKENGGII 112

Query: 298 NLIDVYCLFNRAR-GTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEES 356
           +L D+Y L+NRAR GT L+SP+DL +AC   EK  +   L K  SGV+ +QS   S+   
Sbjct: 113 SLQDLYALYNRARGGTELVSPEDLLKACKKLEKLGLGFKLVKIGSGVLVVQSVPKSELSE 172

Query: 357 MMERI 361
              +I
Sbjct: 173 DQTKI 177

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219
>gnl|CDD|221148 pfam11605, Vps36_ESCRT-II, Vacuolar protein sorting protein 36 Vps36 Back     alignment and domain information
>gnl|CDD|241381 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain Back     alignment and domain information
>gnl|CDD|241380 cd13226, PH-like_Eap45_GLUE, Eap45 GLUE (GRAM-like ubiquitin-binding in Eap45) Pleckstrin homology-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 370
KOG2760432 consensus Vacuolar sorting protein VPS36 [Intracel 100.0
PF04157223 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP 100.0
PF1160589 Vps36_ESCRT-II: Vacuolar protein sorting protein 3 99.93
KOG3341249 consensus RNA polymerase II transcription factor c 99.86
KOG3294261 consensus WW domain binding protein WBP-2, contain 99.76
PF1447096 bPH_3: Bacterial PH domain 96.85
PF0289369 GRAM: GRAM domain; InterPro: IPR004182 The GRAM do 96.83
smart0068355 DM16 Repeats in sea squirt COS41.4, worm R01H10.6, 96.68
smart0056861 GRAM domain in glucosyltransferases, myotubularins 96.53
PF08000124 bPH_1: Bacterial PH domain; InterPro: IPR012544 Th 96.12
PF10349116 WWbp: WW-domain ligand protein; InterPro: IPR01882 95.47
PF0856779 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom 95.38
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 95.06
PF07289339 DUF1448: Protein of unknown function (DUF1448); In 94.1
PF03517135 Voldacs: Regulator of volume decrease after cellul 85.01
PF04283221 CheF-arch: Chemotaxis signal transduction system p 80.86
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-79  Score=593.55  Aligned_cols=339  Identities=37%  Similarity=0.592  Sum_probs=289.8

Q ss_pred             CCcccccCCCCceeeCCceEEEEecceEEeeCCCCC---------------------CCCCCCCceEEEEeeceeEEe--
Q 017530            7 FLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDA---------------------VSFPPLKSGHFILTTHRLLFL--   63 (370)
Q Consensus         7 ~~~~~lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~---------------------~~~~~~~~G~l~LTTHRIiw~--   63 (370)
                      |.-+++|++|.|+|.|+|..+++++.|.+|+|+++.                     .+++.|++|.++|||||+||.  
T Consensus         2 ~fy~ett~s~~~~~~~~e~~~~~~q~~~~~fg~~~~~~~~ne~l~lt~~~I~~~D~~~k~~~~~dg~~vltt~Rliw~~p   81 (432)
T KOG2760|consen    2 WFYVETTSSGQPLLSPGEEDIFIDQSVMLRFGWSKILRSQNETLLLTSQRIIIYDGDKKTTKFDDGTLVLTTHRLIWRSP   81 (432)
T ss_pred             ceEEEecCCCCCCCCCcccceeeecccchhcccchhhhccCceEEEeecceEEecCCCccccccchhhhhhhceeeecCc
Confidence            445677777777777766666665555444444221                     136899999999999999999  


Q ss_pred             -eCCCCCceEEeeccceeeecccCCCcccccCCCceeeeeccCCCCCCCCCCCCCccCCcccEEEEEEecCCChhhHHHH
Q 017530           64 -SSSCSSTAVAIPLSAITHIFSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSK  142 (370)
Q Consensus        64 -d~~~~~~slslpL~~V~~~~~~~~~~~~~f~s~kI~~~l~~~P~~~~~~~~pg~~~~s~~~~ikLSFr~~G~~~~F~~~  142 (370)
                       +..+...+.+||++.|++++.+..+-..+.+.++|..++++|+.+    ..|||...+.+.+|+||||++|+ .+||.+
T Consensus        82 ~~~~~~~~~~~~pls~vI~v~~~~~~~~~~g~~~~i~~~~~~~~~~----~~~gp~~a~~~~~iqLsFR~~g~-~~F~~~  156 (432)
T KOG2760|consen   82 TSSADVEVTWVCPLSMVINVGEPAKSELTFGKINRIVVILHKPNPR----FSPGPCPASTFAFIQLSFRGSGS-VDFLEA  156 (432)
T ss_pred             ccccccceeeeeceeEEEEecCccchhhcccccceEEEEeCCCCCc----CCCCCcccceeeEEEEEecCCCc-HHHHHH
Confidence             455677789999999999999888766678999999999877653    47888888999999999996665 889999


Q ss_pred             HHHHHhhcccccccCCCCC----CCCCccccccccCCCCcccccchhhhhccHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 017530          143 MWECWRGRAWAWETTPSET----GPASASASASLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKE  218 (370)
Q Consensus       143 L~~aL~~k~W~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~GI~gi~r~~~~~~~~~~~~l~~af~DL~~LM~~Ake  218 (370)
                      |++.+.++.|+.  ...+.    ...++++.+..++..++.|++||+||+|+.++|+++||.+|++||+||++||++|||
T Consensus       157 l~ee~~~r~we~--~~~s~s~~~~r~s~~~~e~~~~~~~t~r~vGI~giEr~~e~q~~~td~~i~~AFqDLskLMs~Ake  234 (432)
T KOG2760|consen  157 LLEEKNKRIWER--NSVSESGVDMRKSSPSHEYEVPFIGTLRMVGISGIERSLEEQLKKTDKTINNAFQDLSKLMSLAKE  234 (432)
T ss_pred             HHHHHHHHHHHh--ccccccccccccCcccccccccccceeeeechhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence            999999999994  33221    112222223345566778899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcccccccHHHHHHHHHhcCCcCccccCcch---hhhHHHHHHHHHHHhhchhcccCc
Q 017530          219 MVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLLSVGIVSPVTKESAG---ALYHQQLSRQLADFVKIPLERAGG  295 (370)
Q Consensus       219 mv~la~~~~~ki~~~~~~~~~~~~de~~~~~~~~~s~l~slGi~~pvt~~~~~---~~y~~eLarqlae~l~~~l~k~gG  295 (370)
                      ||.||+++++|+++.   ++.+++||++    .|.+++++|||.+|||++.++   +.||+|||+||+||+..+++++||
T Consensus       235 mv~Lsk~~~~Km~~~---~g~i~dDetv----~~ks~llsLGI~dpvt~~n~~~s~~~Y~~~Lakqlse~l~~~lee~gg  307 (432)
T KOG2760|consen  235 MVSLSKSIAEKMKSK---TGEIQDDETV----RFKSYLLSLGILDPVTKDNFGLSLSLYHQELAKQLSEFLRLPLEENGG  307 (432)
T ss_pred             HHHHHHHHHHHHHhh---cCCcCchhhh----hhHHhhhhhccCCcchhccccchHHHHHHHHHHHHHHHHhcchhhcCC
Confidence            999999999999976   5677899987    789999999999999999875   999999999999999999999999


Q ss_pred             eeehHHHHHHHHHhhcCCCCCHHHHHHHHHhhhhcCCCeEEEEeCCceEEEEcCCCChhHHHHH
Q 017530          296 MINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMME  359 (370)
Q Consensus       296 mitL~dl~~~~NRaRG~eLvSP~Dl~~Ac~~~~~l~lp~~lr~f~SG~~Vvq~~~~sde~~~~~  359 (370)
                      ||||+|+||+||||||++||||+||.+||++|+++++|++||+|+||++|||.++|+|+++|..
T Consensus       308 misLtdvY~~~NRaRG~eLiSPedl~~ACe~le~l~~pl~L~kf~SGvlvvqlKs~~~~e~l~~  371 (432)
T KOG2760|consen  308 MISLTDVYCRYNRARGTELISPEDLVNACELLEHLGVPLRLRKFNSGVLVVQLKSHSDEEKLVD  371 (432)
T ss_pred             EEEHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcCCceEEEEcCCceEEEEeeccchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999443

>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex Back     alignment and domain information
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes Back     alignment and domain information
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription] Back     alignment and domain information
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms] Back     alignment and domain information
>PF14470 bPH_3: Bacterial PH domain Back     alignment and domain information
>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>smart00683 DM16 Repeats in sea squirt COS41 Back     alignment and domain information
>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins Back     alignment and domain information
>PF08000 bPH_1: Bacterial PH domain; InterPro: IPR012544 This family contains many bacterial hypothetical proteins Back     alignment and domain information
>PF10349 WWbp: WW-domain ligand protein; InterPro: IPR018826 This entry represents a sequence domain found in WW domain-binding protein that is characterised by several short PY and PT-like motifs of the PPPPY form Back     alignment and domain information
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5) Back     alignment and domain information
>PF03517 Voldacs: Regulator of volume decrease after cellular swelling; InterPro: IPR003521 The nucleotide-sensitive chloride conductance regulatory protein (ICln) is found ubiquitously in mammalian (and other) cell types and is postulated to play a critical role in cell volume regulation Back     alignment and domain information
>PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
2zme_B238 Integrated Structural And Functional Model Of The H 4e-41
3cuq_B218 Integrated Structural And Functional Model Of The H 1e-36
1w7p_D566 The Crystal Structure Of Endosomal Complex Escrt-Ii 4e-04
>pdb|2ZME|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 238 Back     alignment and structure 
Iteration: 1

 Score =  165 bits (418), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 82/181 (45%), Positives = 122/181 (67%), Gaps = 9/181 (4%)
Query: 177 GSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSS 236
           G +R VG+ G+ RK +E  + TD+++ EAF+DL+ LM KAKEMV L++ +  K+      
Sbjct: 1   GRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSIANKI---KDK 57
Query: 237 QSNSANDEELGSKEEMQDWLLSVGIVSPVTKES--AGALYHQQLSRQLADFVKIPLERAG 294
           Q +   DE +      + +LLS+GI +PVT+E+  +G  YH QL++QLA  +++PLE  G
Sbjct: 58  QGDITEDETI----RFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERG 113
Query: 295 GMINLIDVYCLFNRARGTALISPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDE 354
           G+++L +VYCL NRARG  L+SP+DL  AC + E   +P+ LR FDSGVM I+ +SH +E
Sbjct: 114 GIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEE 173
Query: 355 E 355
           E
Sbjct: 174 E 174
>pdb|3CUQ|B Chain B, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 218 Back     alignment and structure
>pdb|1W7P|D Chain D, The Crystal Structure Of Endosomal Complex Escrt-Ii (Vps22VPS25VPS36) Length = 566 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query370
3cuq_B218 Vacuolar protein-sorting-associated protein 36; ES 3e-57
1w7p_D566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 3e-49
1w7p_D 566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 1e-08
1u5t_B169 Defective in vacuolar protein sorting; VPS36P; ESC 4e-27
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 1e-17
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 9e-16
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218 Back     alignment and structure
 Score =  185 bits (470), Expect = 3e-57
 Identities = 71/169 (42%), Positives = 108/169 (63%), Gaps = 9/169 (5%)

Query: 198 TDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKEEMQDWLL 257
           TD+++ EAF+DL+ LM KAKEMV L++ +  K+       +              + +LL
Sbjct: 2   TDKNISEAFEDLSKLMIKAKEMVELSKSIANKIKDKQGDITEDET-------IRFKSYLL 54

Query: 258 SVGIVSPVTKES--AGALYHQQLSRQLADFVKIPLERAGGMINLIDVYCLFNRARGTALI 315
           S+GI +PVT+E+  +G  YH QL++QLA  +++PLE  GG+++L +VYCL NRARG  L+
Sbjct: 55  SMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTEVYCLVNRARGMELL 114

Query: 316 SPDDLSQACSLWEKFDVPVMLRKFDSGVMAIQSKSHSDEESMMERIRFL 364
           SP+DL  AC + E   +P+ LR FDSGVM I+ +SH +EE +   +  +
Sbjct: 115 SPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETV 163
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 169 Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Length = 140 Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
1w7p_D566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 100.0
3cuq_B218 Vacuolar protein-sorting-associated protein 36; ES 100.0
2hth_B140 Vacuolar protein sorting protein 36; GLUE domain, 100.0
2cay_A145 VPS36 PH domain, vacuolar protein sorting protein 100.0
3cuq_A234 Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu 99.97
1u5t_A233 Appears to BE functionally related to SNF7; SNF8P; 99.96
1u5t_B169 Defective in vacuolar protein sorting; VPS36P; ESC 99.95
1lw3_A 657 Myotubularin-related protein 2; protein-phosphate 97.2
1zsq_A 528 Myotubularin-related protein 2; protein-phospholip 97.18
3hsa_A126 Pleckstrin homology domain; YP_926556.1, structura 96.51
1pfj_A108 TFIIH basal transcription factor complex P62 subun 96.26
1zyi_A171 Methylosome subunit picln; PH domain, cell volume 96.08
1y5o_A115 TFB1, RNA polymerase II transcription factor B 73 93.48
3b77_A193 Uncharacterized protein; pleckstrin-homology domai 91.37
2yf0_A 512 Myotubularin-related protein 6; hydrolase; 2.65A { 90.69
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
Probab=100.00  E-value=3e-77  Score=617.67  Aligned_cols=340  Identities=19%  Similarity=0.310  Sum_probs=91.1

Q ss_pred             CCCCCcccccCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCCC-CceEEeeccceeee
Q 017530            4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSCS-STAVAIPLSAITHI   82 (370)
Q Consensus         4 ~~~~~~~~lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~~-~~slslpL~~V~~~   82 (370)
                      |+||+++++|+|+||+|.+||++|+++|+|+||+|++|   +++||+|++|||||||||+|..++ +.+++|||+.|.++
T Consensus         1 m~~~~~~~~t~s~rp~L~~~E~~l~vqd~VgLY~Gk~K---i~~~q~G~~yLTShRiiyvD~~~p~~~s~~l~L~~I~~~   77 (566)
T 1w7p_D            1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV   77 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCccccccccccCCcccCCCceEEEeecccccccCCcC---CccccCceEEEEeeeEEEecCCCCcceEEEEEhHHccee
Confidence            68999999999999999999999999999999999985   899999999999999999999874 48999999999999


Q ss_pred             cccCCCcccccCCCceeeeeccCCCCC----------------C--------------CC--------------------
Q 017530           83 FSSKRSLKSVFHSPRFRFQVSATPDNR----------------I--------------FD--------------------  112 (370)
Q Consensus        83 ~~~~~~~~~~f~s~kI~~~l~~~P~~~----------------~--------------~~--------------------  112 (370)
                      +...+++   .+||||++++.+++.++                |              ++                    
T Consensus        78 e~~agfl---ksSpKI~L~l~~~~~~~~~~~~~~~~~~~~~~tWvC~ICsfsN~~~~~f~~~~~~~p~C~~CGi~p~~~~  154 (566)
T 1w7p_D           78 NYSSGFL---TRSPRLILFFKDPSSKDELGKSAETASADVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPADYEL  154 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeeccc---cCCCceEEeecCcccccccCCCCCCcccccccceeccccccCCCCCCCCCcccCCCCcccccCCCCchhh
Confidence            9998874   47999998776433111                0              00                    


Q ss_pred             -----------------------------------------------------C--------------------------
Q 017530          113 -----------------------------------------------------S--------------------------  113 (370)
Q Consensus       113 -----------------------------------------------------~--------------------------  113 (370)
                                                                           .                          
T Consensus       155 ~k~~i~~~~~~~~~~~~~~~~~~~~~~~CP~CTF~NHPsl~~CEiCg~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (566)
T 1w7p_D          155 TKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGNCEICGHRLPNASKVRSKLNRLNFHDSRVHIELEKNSLA  234 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhhhhhccccCCCcccCccccccccCCCCCcccccCChhhhcccccCCcCCCcccccccccccccccccccccccccccc
Confidence                                                                 0                          


Q ss_pred             ---CCCCc------cCCcccEEEEEEecCCChhhHHHHHHHHHhhcccccccCCCCCCCCCcc------ccc--------
Q 017530          114 ---DPGRV------TGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWAWETTPSETGPASAS------ASA--------  170 (370)
Q Consensus       114 ---~pg~~------~~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~k~W~~~~~~~~~~~~~~~------~~~--------  170 (370)
                         .|+|.      ..+...+|||||| +||.+.||++|+++|.+|+|+  ..++..+.++..      ...        
T Consensus       235 ~~~sp~p~~~s~~~~~~~~~~iKLSFR-~gg~~~F~~~L~~aL~~~~W~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  311 (566)
T 1w7p_D          235 RNKSSHSALSSSSSTGSSTEFVQLSFR-KSDGVLFSQATERALENILTE--KNKHIFNQNVVSVNGVDMRKGASSHEYNN  311 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCcccccccCCCccCceEEEEEc-CCCchHHHHHHHHHHHHHHhh--hCCCccCCCcccccccccccccccccccc
Confidence               01111      0113469999999 555699999999999999998  555432211100      000        


Q ss_pred             cccCCCCcccccchhhhhccHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccHH
Q 017530          171 SLYASDGSVRMVGVGGLLRKEQEMWESTDRSLQEAFQDLNALMNKAKEMVMLAEKMRQKLLAGSSSQSNSANDEELGSKE  250 (370)
Q Consensus       171 ~~~~~~~~~~~~GI~gi~r~~~~~~~~~~~~l~~af~DL~~LM~~Akemv~la~~~~~ki~~~~~~~~~~~~de~~~~~~  250 (370)
                      ..+......+++||+||+|+.++++++++..|++||+||++||++|||||+||+++++++++++..   ++++++.....
T Consensus       312 ~~~~~~~~~~~~GI~gler~~e~~~~~~~~~i~~Af~DL~~LM~~AkemV~La~~~~~~~~~~~~~---~s~~~~~~e~~  388 (566)
T 1w7p_D          312 EVPFIETKLSRIGISSLEKSRENQLLNNDILFNNALTDLNKLMSLATSIERLYKNSNITMKTKTLN---LQDESTVNEPK  388 (566)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccCcccCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhcccC---CCCCccchhhH
Confidence            000022234679999999999999999999999999999999999999999999999999876432   22222211123


Q ss_pred             HHHHHHHhcCCcCccccCcc--hhhhHHHHHHHHHHHhhchh----cc-cCceeehHHHHHHHHHh-h-cCCCCCHHHHH
Q 017530          251 EMQDWLLSVGIVSPVTKESA--GALYHQQLSRQLADFVKIPL----ER-AGGMINLIDVYCLFNRA-R-GTALISPDDLS  321 (370)
Q Consensus       251 ~~~s~l~slGi~~pvt~~~~--~~~y~~eLarqlae~l~~~l----~k-~gGmitL~dl~~~~NRa-R-G~eLvSP~Dl~  321 (370)
                      +++++|       |||++++  +++||+||||||+|||....    ++ +||||+|+||||+|||| | |++||||+||+
T Consensus       389 ~~~s~L-------~Vtrd~~~s~~~f~~ELA~qI~E~c~~~~~~~l~~~nGGmItL~DL~~~~NRa~R~g~elISp~Dll  461 (566)
T 1w7p_D          389 TRRPLL-------ILDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLISPMEMR  461 (566)
T ss_dssp             --------------CCSSCCCCHHHHHHHHHHHHHHHHHHTTCCSSCSCCCCEEEHHHHHHHHHHHTTTTTCCCCHHHHH
T ss_pred             hhHhhc-------ccchhhcCChhHHHHHHHHHHHHHHHhhhcccchhcCcCeEEHHHHHHHHHHhccCCCCccCHHHHH
Confidence            566666       9999954  69999999999999998776    77 99999999999999999 9 89999999999


Q ss_pred             HHHHhhhhcCCCeE-EEEeCCceEEEEcCCCChhHHHHHHHhhhh
Q 017530          322 QACSLWEKFDVPVM-LRKFDSGVMAIQSKSHSDEESMMERIRFLG  365 (370)
Q Consensus       322 ~Ac~~~~~l~lp~~-lr~f~SG~~Vvq~~~~sde~~~~~r~~~l~  365 (370)
                      +||++|+.|++|++ |++|+||++|+ +.+++ +.+ ..+|.+++
T Consensus       462 ~A~~~le~Lg~~~~~L~~~~sgvlVv-s~~~~-~~~-~~~il~l~  503 (566)
T 1w7p_D          462 EACERFEHLGLNELKLVKVNKRILCV-TSEKF-DVV-KEKLVDLI  503 (566)
T ss_dssp             HHHTTGGGGTCTTCEEEECSSSCEEE-ESSCH-HHH-HHHHHHHH
T ss_pred             HHHHHHHHcCCCeEEEEEECCEEEEE-cCCCc-hHH-HHHHHHHH
Confidence            99999999999999 99999999998 88887 777 88888765
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Back     alignment and structure
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A Back     alignment and structure
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12 Back     alignment and structure
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A Back     alignment and structure
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A Back     alignment and structure
>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A* Back     alignment and structure
>3hsa_A Pleckstrin homology domain; YP_926556.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE MLY; 1.99A {Shewanella amazonensis SB2B} SCOP: b.55.1.13 PDB: 3dcx_A* Back     alignment and structure
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B Back     alignment and structure
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA splicing, translation; NMR {Canis lupus familiaris} Back     alignment and structure
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A* Back     alignment and structure
>3b77_A Uncharacterized protein; pleckstrin-homology domain, structural genomics, joint cente structural genomics, JCSG; 2.42A {Exiguobacterium sibiricum} SCOP: b.55.1.13 Back     alignment and structure
>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 370
d1u5tb194 a.4.5.54 (B:396-489) Vacuolar protein sorting-asso 1e-29
d2caya1130 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sort 4e-18
d2hthb1129 b.55.1.12 (B:3-131) Vacuolar protein sorting prote 4e-16
d1zsqa1125 b.55.1.8 (A:74-198) Myotubularin-related protein 2 0.002
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 94 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar protein sorting-associated protein VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (269), Expect = 1e-29
 Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 10/94 (10%)

Query: 265 VTKES--AGALYHQQLSRQLADFVKIPLERAGG-----MINLIDVYCLFNRAR--GTALI 315
           + +E      L+  +++R++ +F     +         +I L+D+Y ++N++   GT LI
Sbjct: 1   LDREKFLNKELFLDEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGTGLI 60

Query: 316 SPDDLSQACSLWEKFDV-PVMLRKFDSGVMAIQS 348
           SP ++ +AC  +E   +  + L K +  ++ + S
Sbjct: 61  SPMEMREACERFEHLGLNELKLVKVNKRILCVTS 94
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 130 Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Length = 129 Back     information, alignment and structure
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query370
d2caya1130 Vacuolar protein sorting protein 36, VPS36 {Baker' 100.0
d1u5tb194 Vacuolar protein sorting-associated protein VPS36 100.0
d2hthb1129 Vacuolar protein sorting protein 36, VPS36 {Human 99.97
d1u5ta1145 Vacuolar sorting protein SNF8 {Baker's yeast (Sacc 99.76
d1zsqa1125 Myotubularin-related protein 2, N-terminal domain 98.13
d2rnrb1108 TFIIH basal transcription factor complex p62 subun 96.62
d3dcxa1116 Uncharacterized protein Shew0819 {Shewanella loihi 95.76
d1y5oa1114 RNA polymerase II transcription factor B 73 kDa, T 85.11
>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=253.44  Aligned_cols=129  Identities=19%  Similarity=0.286  Sum_probs=116.0

Q ss_pred             CCCCCcccccCCCCceeeCCceEEEEecceEEeeCCCCCCCCCCCCceEEEEeeceeEEeeCCC-CCceEEeeccceeee
Q 017530            4 NNFFLPASVTSSGRPVLVPNEVECNLLSNVDIEHDQDDAVSFPPLKSGHFILTTHRLLFLSSSC-SSTAVAIPLSAITHI   82 (370)
Q Consensus         4 ~~~~~~~~lT~sgrpvL~~~E~~l~~~~~V~Ly~g~~~~~~~~~~~~G~l~LTTHRIiw~d~~~-~~~slslpL~~V~~~   82 (370)
                      |+||+++++|+||||+|++||++|+.+++|+||+|++|   .++|++|+||||||||||+|+.+ ...|+++||..|.++
T Consensus         1 ~~~w~~~~~t~sg~p~L~~~E~~l~~qd~V~Ly~g~~k---~~~~~~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~   77 (130)
T d2caya1           1 MEYWHYVETTSSGQPLLREGEKDIFIDQSVGLYHGKSK---ILQRQRGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYV   77 (130)
T ss_dssp             GGTCEECCBCTTSCBCCCTTCCEEEEEEEEEEEETTEE---CTTCSSEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEE
T ss_pred             CcccchhhcccCCCeEccCCeEEEEEeCCEEEEECCcc---CccccCceEEEEeeEEEEecCCCCceeEEEeEhhheeEe
Confidence            58999999999999999999999999999999999985   67999999999999999999765 466899999999999


Q ss_pred             cccCCCcccccCCCceeeeeccCCCCCCCCCCCCCccCCcccEEEEEEecCCChhhHHHHHHHHHhhcccc
Q 017530           83 FSSKRSLKSVFHSPRFRFQVSATPDNRIFDSDPGRVTGLRSVVITVVVRGKGDWELFLSKMWECWRGRAWA  153 (370)
Q Consensus        83 ~~~~~~~~~~f~s~kI~~~l~~~P~~~~~~~~pg~~~~s~~~~ikLSFr~~G~~~~F~~~L~~aL~~k~W~  153 (370)
                      +.+++++   .+||||++|+.+++.              .+.+|||||| +||..+|+++|+.+|.+++|+
T Consensus        78 e~~~~~~---~ss~KI~l~l~~~~~--------------~~~~vklsFr-~gg~~~F~~~~~~~~~~~~~~  130 (130)
T d2caya1          78 NYSSGFL---TRSPRLILFFKDPSS--------------STEFVQLSFR-KSDGVLFSQATERALENILTE  130 (130)
T ss_dssp             EEECSSS---SSSCEEEEEESSCSS--------------TTCCEEEEES-SSCCHHHHHHHHHHHHHHHHC
T ss_pred             EEEcccc---CCCCeEEEEeCCCCC--------------CCCEEEEEEc-CCChHHHHHHHHHHHHHHhcC
Confidence            9999974   479999999875432              3589999999 566699999999999999996
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dcxa1 b.55.1.13 (A:9-124) Uncharacterized protein Shew0819 {Shewanella loihica [TaxId: 359303]} Back     information, alignment and structure
>d1y5oa1 b.55.1.9 (A:2-115) RNA polymerase II transcription factor B 73 kDa, TFB1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure