Citrus Sinensis ID: 017535

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Protein Sequence
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccEEEEccccccccccccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccEHHEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccccccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
mapmtfmgipgwrISFHIVGLISVVVGTLVRlfandphfpdggtansdqvssksFRSDVKVLIQEAKSVIKIPSFQIIVAQgvtgsfpwsALSFAAMWLELTGFSHEKTAFLMALFVIASSlgglfggrmgdflsarfpnsGRIILAQISSLSAIPLAALLLLvlpddpstpvmhGLVLVVTGLfiswnapatnnpifaeivpeksrtsvyaMDRSFESilssfappvvGILAQhvygfkpipkgssateEIATDRANAASLAKALYTAIGIPMALCCFIYSFlystyprdRERARMEALIESEMQQLessnlpaaveyshvqfsesevlsvknrtviemdydyedgldlddndeKILLYRQLTFSNLGE
Flexible Loop (DISEMBL)
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHfpdggtansdqvsskSFRSDVKVLIQEAksvikipsFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVqfsesevlsvknrTVIEMDYDYEDGLDLDDNDEKILLYRQltfsnlge
Low Complexity Region (SEG)
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRiilaqisslsaiplaallllvlpddpstpVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMdydyedgldlddndeKILLYRQLTFSNLGE
Disordered region (IsUnstruct)
****TFMGIPGWRISFHIVGLISVVVGTLVRLFANDP********************DVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIP************RANAASLAKALYTAIGIPMALCCFIYSFLYSTYP***************************VEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTF*****
Disordered Region (DISOPRED)
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFAN*************************VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRE**********************************************MDYDYEDGLDLDDNDEKILLYR*********
Disordered Region (DISEMBL)
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGG*************SDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Disordered Region (DISPRO)
**PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPD*********SSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPK**SATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESS*********H*****SEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTF*****
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLTFSNLGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
255545694	526	carbohydrate transporter, putative [Rici	0.986	0.693	0.759	1e-161
225459330	522	PREDICTED: purine efflux pump PbuE [Viti	0.989	0.701	0.786	1e-158
449437244	521	PREDICTED: uncharacterized protein LOC10	0.986	0.700	0.758	1e-156
449502871	521	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.986	0.700	0.758	1e-156
356552876	503	PREDICTED: protein spinster-like [Glycin	0.945	0.695	0.730	1e-148
357489577	506	Quinolone resistance protein norA [Medic	0.951	0.695	0.720	1e-146
225439014	526	PREDICTED: uncharacterized protein LOC10	0.997	0.701	0.705	1e-146
296090607	521	unnamed protein product [Vitis vinifera]	0.997	0.708	0.705	1e-146
449451621	520	PREDICTED: protein spinster-like [Cucumi	0.989	0.703	0.678	1e-142
224099933	520	predicted protein [Populus trichocarpa]	0.994	0.707	0.716	1e-141

>gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis] gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/370 (75%), Positives = 317/370 (85%), Gaps = 5/370 (1%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           +AP+TFMGIPGWR+SFH+VG+ISV+VG LV LFANDPHF D    N +Q  SKSF S+VK
Sbjct: 153 IAPITFMGIPGWRLSFHLVGIISVMVGVLVYLFANDPHFSDASMKNRNQDVSKSFFSEVK 212

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L++EAKSVIKIPSFQIIVAQG+TGSFPWSAL+F+AMWLEL GFSHEKTA L+ALFVIA 
Sbjct: 213 DLVREAKSVIKIPSFQIIVAQGITGSFPWSALTFSAMWLELIGFSHEKTALLIALFVIAG 272

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           S GGLFGG+MGD LS RFPN+GRIILAQISS SAIPLAA+LLL LPDDPST  MHGLVLV
Sbjct: 273 SFGGLFGGKMGDILSTRFPNAGRIILAQISSASAIPLAAILLLGLPDDPSTAFMHGLVLV 332

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           V GLFI+WNAPATNNPIFAEIVPEKSRTSVYA+DRSFESILSSFAPP+VG+LAQ+VYG+K
Sbjct: 333 VMGLFITWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPIVGLLAQYVYGYK 392

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
           P+PKGSS +EEIATDR NAASLAKALYTAIGIPMALCCFIYSFLY TYPRDRERA MEAL
Sbjct: 393 PLPKGSSESEEIATDRRNAASLAKALYTAIGIPMALCCFIYSFLYRTYPRDRERAHMEAL 452

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           IE EM+QL   + P +     V+  E+E       +VIEM Y+ ED  DLDD++EK++ Y
Sbjct: 453 IELEMEQLILDDSPTSRGNCQVELVEAE-----EASVIEMVYEGEDCPDLDDDEEKMMPY 507

Query: 361 RQLTFSNLGE 370
           RQLTFSNL E
Sbjct: 508 RQLTFSNLSE 517

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459330|ref|XP_002285800.1| PREDICTED: purine efflux pump PbuE [Vitis vinifera] gi|302141945|emb|CBI19148.3| unnamed protein product [Vitis vinifera]

 Score =  564 bits (1453), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/366 (78%), Positives = 319/366 (87%)

Query: 5   TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQ 64
           TFMGI GWRISFH+VGL+SV+VG LVRLFANDPHFPDG    S+QV SKS  S+VK L+Q
Sbjct: 157 TFMGIAGWRISFHLVGLVSVIVGILVRLFANDPHFPDGAAKASNQVPSKSIWSEVKDLVQ 216

Query: 65  EAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGG 124
           EAKSVIKI SFQIIVAQGVTGSFPWSALSFA MWLEL GFSH+KTAFL++LFVIA+SLGG
Sbjct: 217 EAKSVIKITSFQIIVAQGVTGSFPWSALSFAPMWLELIGFSHKKTAFLISLFVIAASLGG 276

Query: 125 LFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGL 184
           LFGGRMGD LS   P+SGRIILAQISSLSAIPLAALLLLVLPD+PST  MHGLVL + GL
Sbjct: 277 LFGGRMGDILSRIRPDSGRIILAQISSLSAIPLAALLLLVLPDNPSTAAMHGLVLFIMGL 336

Query: 185 FISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPK 244
            ISWNAPATNNPIFAEIVPEKSRTS+YA+DRSFESILSSFAPPVVGILAQHVYG+KP+P+
Sbjct: 337 CISWNAPATNNPIFAEIVPEKSRTSIYALDRSFESILSSFAPPVVGILAQHVYGYKPVPE 396

Query: 245 GSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALIESE 304
           GSS +EEIATDR NAASLAKALYTAIGIPMALCC IYSFLYSTYPRD+ERA+MEALIESE
Sbjct: 397 GSSESEEIATDRGNAASLAKALYTAIGIPMALCCLIYSFLYSTYPRDKERAQMEALIESE 456

Query: 305 MQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLYRQLT 364
           MQQ+ES N+ A  EY   Q  ESE   V +R V E+DY+     D ++ND+K+LL+ QLT
Sbjct: 457 MQQMESDNICAGTEYPRAQLLESEDAYVNDRGVTEIDYEGRSSPDFEENDDKMLLHHQLT 516

Query: 365 FSNLGE 370
           FSNLGE
Sbjct: 517 FSNLGE 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437244|ref|XP_004136402.1| PREDICTED: uncharacterized protein LOC101220496 [Cucumis sativus]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 313/369 (84%), Gaps = 4/369 (1%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKS-FRSDV 59
           +AP+TFMGIPGWRI+FH+VGLISV+VG LVRLFA DPHF D G    + V  +S F S+V
Sbjct: 153 IAPITFMGIPGWRIAFHLVGLISVIVGILVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEV 212

Query: 60  KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIA 119
           KVL +EAKSV+KIPSFQIIVAQGVTGSFPWSALSFA MWLEL GFSH+KTAFLM +FVI 
Sbjct: 213 KVLAREAKSVMKIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHQKTAFLMGMFVIG 272

Query: 120 SSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL 179
           +SLGGLFGG+MGD LS RFPNSGRIILAQISS S IPLAA+LLL LPD PST V+HGLVL
Sbjct: 273 NSLGGLFGGKMGDILSTRFPNSGRIILAQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVL 332

Query: 180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF 239
           ++ G FISWNAPATNNPIFAEIVPEKSRTSVYA+DRSFESILSSFAPPVVGILAQHVYG+
Sbjct: 333 IIVGFFISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGY 392

Query: 240 KPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEA 299
           KP+ KGSS +EEIATDR NAASLA+ALYTAIGIP+ALCCFIYSFLY TYPRDRERARME 
Sbjct: 393 KPVQKGSSESEEIATDRENAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEV 452

Query: 300 LIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILL 359
           LIESEMQQ+ES   P+   YS V  + S+ L   +RTVI+MDY+ +      D+DEK  L
Sbjct: 453 LIESEMQQIESERSPSGAGYSQVHLAGSDDLYTTDRTVIDMDYEDD---LDFDDDEKTAL 509

Query: 360 YRQLTFSNL 368
           YRQLTFSN 
Sbjct: 510 YRQLTFSNF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502871|ref|XP_004161766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101220496 [Cucumis sativus]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 314/369 (85%), Gaps = 4/369 (1%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKS-FRSDV 59
           +AP+TFMGIPGWRI+FH+VGLISV+VG LVRLFA DPHF D G    + V  +S F S+V
Sbjct: 153 IAPITFMGIPGWRIAFHLVGLISVIVGILVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEV 212

Query: 60  KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIA 119
           KVL +EAKSV+KIPSFQIIVAQGVTGSFPWSALSFA MWLEL GFSH+KTAFLM +FVI 
Sbjct: 213 KVLAREAKSVMKIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHQKTAFLMGMFVIG 272

Query: 120 SSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL 179
           +SLGGLFGG+MGD LS RFPNSGRIILAQISS S IPLAA+LLL LPD PST V+HGLVL
Sbjct: 273 NSLGGLFGGKMGDILSTRFPNSGRIILAQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVL 332

Query: 180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF 239
           ++ G+FISWNAPATNNPIFAEIVPEKSRTSVYA+DRSFESILSSFAPPVVGILAQHVYG+
Sbjct: 333 IIXGVFISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGY 392

Query: 240 KPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEA 299
           KP+ KGSS +EEIATDR NAASLA+ALYTAIGIP+ALCCFIYSFLY TYPRDRERARME 
Sbjct: 393 KPVQKGSSESEEIATDRENAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEV 452

Query: 300 LIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILL 359
           LIESEMQQ+ES   P+   YS V  + S+ L   +RTVI+MDY+ +      D+DEK  L
Sbjct: 453 LIESEMQQIESERSPSGAGYSQVHLAGSDDLYTTDRTVIDMDYEDD---LDFDDDEKTAL 509

Query: 360 YRQLTFSNL 368
           YRQLTFSN 
Sbjct: 510 YRQLTFSNF 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552876|ref|XP_003544788.1| PREDICTED: protein spinster-like [Glycine max]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/367 (73%), Positives = 302/367 (82%), Gaps = 17/367 (4%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           +AP+T  GIPGWRISFHIVGLIS++VG LV LFANDPHF D GT +  Q  +K+F S+VK
Sbjct: 153 IAPITVFGIPGWRISFHIVGLISIIVGALVYLFANDPHFSDNGTNSRRQAPNKTFWSEVK 212

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L+QE+KSV+KI SFQIIVAQGVTGSFPWSALSFA MWLELTGFSHEKTAFLM LFV+AS
Sbjct: 213 DLVQESKSVLKISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHEKTAFLMGLFVVAS 272

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           S+GGLFGG+MGD LS R+PNSGRIILAQISS SAIPLAALLL+ LPDDPST + HGLVL+
Sbjct: 273 SIGGLFGGKMGDILSKRYPNSGRIILAQISSGSAIPLAALLLIGLPDDPSTIISHGLVLI 332

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           + GL ISWN PATNNPIFAEIVPE+SRTSVYAMDRSFESILSSFAPP VGILAQHVYG+K
Sbjct: 333 IMGLLISWNGPATNNPIFAEIVPERSRTSVYAMDRSFESILSSFAPPAVGILAQHVYGYK 392

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
           PIP+GSS ++EI TDR NAASLAK+LYTAIGIPMALCC IY+FLY TYPRDRERA+MEAL
Sbjct: 393 PIPEGSSESQEILTDRENAASLAKSLYTAIGIPMALCCIIYTFLYRTYPRDRERAKMEAL 452

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           IESEMQ +ES  L    E+      ESE LS+ +    ++           D+DE  LLY
Sbjct: 453 IESEMQLIESGGLAMDREF------ESEELSIVDYDDGDI-----------DDDENTLLY 495

Query: 361 RQLTFSN 367
           RQLT S 
Sbjct: 496 RQLTLSK 502

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357489577|ref|XP_003615076.1| Quinolone resistance protein norA [Medicago truncatula] gi|355516411|gb|AES98034.1| Quinolone resistance protein norA [Medicago truncatula]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/372 (72%), Positives = 302/372 (81%), Gaps = 20/372 (5%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGT--ANSDQVSSKSFRSD 58
           +AP+T  GI GWRISFH+VGLIS++VGTLV +FA DPHF D GT   +S+QV  ++F S 
Sbjct: 153 IAPITVFGIAGWRISFHVVGLISIIVGTLVFIFAKDPHFEDKGTLAKDSNQVPKETFWSG 212

Query: 59  VKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVI 118
           V+ L+QEAKSV +I SFQIIVAQGVTGSFPWSALSFA MWLELTGFSH KTAFL+ALFV+
Sbjct: 213 VRDLLQEAKSVSRISSFQIIVAQGVTGSFPWSALSFAPMWLELTGFSHAKTAFLVALFVV 272

Query: 119 ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLV 178
           ASS+GGLFGG+MGD LS   PNSGRIILAQISS SAIPLAA+LLL LPDDPST + HGL+
Sbjct: 273 ASSVGGLFGGKMGDILSRHLPNSGRIILAQISSGSAIPLAAILLLGLPDDPSTALSHGLM 332

Query: 179 LVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG 238
           LV+ GLFISWN PATNNPIFAEIVPE+SRTSVYA+DRSFESILSSFAPP VGIL+QHVYG
Sbjct: 333 LVILGLFISWNGPATNNPIFAEIVPERSRTSVYALDRSFESILSSFAPPAVGILSQHVYG 392

Query: 239 FKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARME 298
           +KPIPKGSSA++EI TDR NA+SLAK+LYTAIGIPMALCC IYSFLY TYPRDRERARME
Sbjct: 393 YKPIPKGSSASQEILTDRENASSLAKSLYTAIGIPMALCCLIYSFLYKTYPRDRERARME 452

Query: 299 ALIESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKIL 358
           ALIESEMQ +ES  L            +SE LS+ +      D D E         E IL
Sbjct: 453 ALIESEMQHIESDGLVV---------DKSEELSIGDYDGDGGDLDDE---------ENIL 494

Query: 359 LYRQLTFSNLGE 370
           LYRQLTFSNL +
Sbjct: 495 LYRQLTFSNLAD 506

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439014|ref|XP_002262789.1| PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 310/370 (83%), Gaps = 1/370 (0%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           +A  +FMGIPGWR++FH+VG+ISV+VG LVRLFA DPHF DG     D++ SK F S+VK
Sbjct: 158 IASTSFMGIPGWRVAFHLVGVISVIVGILVRLFATDPHFSDGNNLAKDKIPSKPFWSEVK 217

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L++EAKSVI+IPSFQIIVAQGV+GSFPWSALSFA MWLEL GFSH+KTAFLM LFVI+ 
Sbjct: 218 DLVKEAKSVIRIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHKKTAFLMTLFVISG 277

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           S+GGLFGG+MGD L+ R PNSGRIIL+QISS S +PLA +LLL+LPDDPST  MHGLVL 
Sbjct: 278 SIGGLFGGKMGDVLAKRLPNSGRIILSQISSASGVPLATVLLLLLPDDPSTAFMHGLVLF 337

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           + GL ISWN  ATNNPIFAEIVPEKSRTSVYA+DRSFESIL+SFAPPVVGIL+Q VYG+K
Sbjct: 338 IMGLCISWNPAATNNPIFAEIVPEKSRTSVYALDRSFESILASFAPPVVGILSQRVYGYK 397

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
           PIP+GS+ + +I TDR NAASLAKALYTAI IP  +CC IYSFLY TYPRDRERARM+AL
Sbjct: 398 PIPEGSTDSAQIETDRENAASLAKALYTAISIPFVVCCLIYSFLYRTYPRDRERARMQAL 457

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           I+SEMQQ++   LP+  EYS + FSE++  + K R+VIE++Y  E+ LD+DDND+K LL 
Sbjct: 458 IDSEMQQMDRDELPSGEEYSQLHFSETKEPNDKERSVIEIEYGDEN-LDVDDNDKKTLLP 516

Query: 361 RQLTFSNLGE 370
            Q  FS+LGE
Sbjct: 517 NQQKFSHLGE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090607|emb|CBI40991.3| unnamed protein product [Vitis vinifera]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/370 (70%), Positives = 310/370 (83%), Gaps = 1/370 (0%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           +A  +FMGIPGWR++FH+VG+ISV+VG LVRLFA DPHF DG     D++ SK F S+VK
Sbjct: 153 IASTSFMGIPGWRVAFHLVGVISVIVGILVRLFATDPHFSDGNNLAKDKIPSKPFWSEVK 212

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L++EAKSVI+IPSFQIIVAQGV+GSFPWSALSFA MWLEL GFSH+KTAFLM LFVI+ 
Sbjct: 213 DLVKEAKSVIRIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHKKTAFLMTLFVISG 272

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           S+GGLFGG+MGD L+ R PNSGRIIL+QISS S +PLA +LLL+LPDDPST  MHGLVL 
Sbjct: 273 SIGGLFGGKMGDVLAKRLPNSGRIILSQISSASGVPLATVLLLLLPDDPSTAFMHGLVLF 332

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           + GL ISWN  ATNNPIFAEIVPEKSRTSVYA+DRSFESIL+SFAPPVVGIL+Q VYG+K
Sbjct: 333 IMGLCISWNPAATNNPIFAEIVPEKSRTSVYALDRSFESILASFAPPVVGILSQRVYGYK 392

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
           PIP+GS+ + +I TDR NAASLAKALYTAI IP  +CC IYSFLY TYPRDRERARM+AL
Sbjct: 393 PIPEGSTDSAQIETDRENAASLAKALYTAISIPFVVCCLIYSFLYRTYPRDRERARMQAL 452

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           I+SEMQQ++   LP+  EYS + FSE++  + K R+VIE++Y  E+ LD+DDND+K LL 
Sbjct: 453 IDSEMQQMDRDELPSGEEYSQLHFSETKEPNDKERSVIEIEYGDEN-LDVDDNDKKTLLP 511

Query: 361 RQLTFSNLGE 370
            Q  FS+LGE
Sbjct: 512 NQQKFSHLGE 521

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451621|ref|XP_004143560.1| PREDICTED: protein spinster-like [Cucumis sativus] gi|449496531|ref|XP_004160158.1| PREDICTED: protein spinster-like [Cucumis sativus]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/367 (67%), Positives = 294/367 (80%), Gaps = 1/367 (0%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           MA  +FMGIPGWRI+FH+VGLISV+VG LV +FANDPHF +    + D    K F S++ 
Sbjct: 153 MASTSFMGIPGWRIAFHLVGLISVIVGLLVWVFANDPHFSEINGRDKDH-PRKPFWSEMM 211

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L++E+KSVI I SFQIIV+QGV GSFPWSALSFA MWLEL GFSHEKT FL  LF+IAS
Sbjct: 212 DLVKESKSVIGIQSFQIIVSQGVAGSFPWSALSFAPMWLELVGFSHEKTGFLWTLFIIAS 271

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           SLGG+FGGR+GD LS RFPNSGRI+L+QISS SA+PLAA+LLLVLPD+PST  +HGLVL 
Sbjct: 272 SLGGIFGGRLGDILSKRFPNSGRIVLSQISSASAVPLAAILLLVLPDNPSTTFLHGLVLF 331

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           + G  +SWNAPATNNPIFAEIVP+KSRTS+YA+DRSFESILSSFAPPVVGILAQHVYG+K
Sbjct: 332 IMGFSMSWNAPATNNPIFAEIVPKKSRTSIYALDRSFESILSSFAPPVVGILAQHVYGYK 391

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
           P  KGS+ + +I TDR NA SLA+ALY AIG PM+LCCFIYSFLY +YPRDRERARM AL
Sbjct: 392 PAAKGSTDSSQIETDRENAKSLARALYAAIGFPMSLCCFIYSFLYCSYPRDRERARMHAL 451

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           IESEM  LESS  P   + S    SE++    K++T +++ Y+ ED LD  D+DEK LL 
Sbjct: 452 IESEMLHLESSTSPLYEQDSQFHISEAKDFDDKDQTEVDLTYEIEDSLDFIDSDEKQLLN 511

Query: 361 RQLTFSN 367
            QL  S+
Sbjct: 512 HQLIDSD 518

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099933|ref|XP_002334427.1| predicted protein [Populus trichocarpa] gi|222872190|gb|EEF09321.1| predicted protein [Populus trichocarpa]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/370 (71%), Positives = 305/370 (82%), Gaps = 2/370 (0%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
           +A  TFMGIPGWR++FH+VG+ISV+VG +VRLFANDP F D  +   DQ S KSF S+VK
Sbjct: 153 IASRTFMGIPGWRVAFHLVGIISVIVGIMVRLFANDPRFSDTNSKAKDQ-SPKSFISEVK 211

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
            L++EAKSVIKIPSFQIIVAQGV+GSFPWSALSFA MWLEL GFSHEKTAFLM LFV+A 
Sbjct: 212 YLMKEAKSVIKIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHEKTAFLMTLFVVAG 271

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
           SLGGLFGG+MGD L+ RFPNSGRI L+QISS SAIPLAA+LLLVLPDDPST  +HGLVL 
Sbjct: 272 SLGGLFGGKMGDVLAKRFPNSGRIFLSQISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLF 331

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           + G  ISWN PATNNPIFAEIVP+KSR SVYA+DRSFES+LSSFAPP VGILAQHVYG+K
Sbjct: 332 IMGFCISWNGPATNNPIFAEIVPQKSRASVYALDRSFESVLSSFAPPTVGILAQHVYGYK 391

Query: 241 PIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEAL 300
             PK S  + ++ TDR NAASLAKALYTAIGIPMALCCFIYSFLY TYPRDR+RARM AL
Sbjct: 392 -TPKKSLDSVQVITDRENAASLAKALYTAIGIPMALCCFIYSFLYCTYPRDRDRARMTAL 450

Query: 301 IESEMQQLESSNLPAAVEYSHVQFSESEVLSVKNRTVIEMDYDYEDGLDLDDNDEKILLY 360
           IE EMQQLE+ + P   E++ +  SE+  L  + RT I+M     + +D DD+D+K LLY
Sbjct: 451 IELEMQQLEADDSPLREEHTRLNVSETNGLDGEERTEIDMKTGNNESIDFDDDDDKALLY 510

Query: 361 RQLTFSNLGE 370
           RQLTFSNL +
Sbjct: 511 RQLTFSNLAD 520

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	370
TAIR|locus:2194749	490	UNE2 "AT1G78130" [Arabidopsis	0.859	0.648	0.693	1e-114
TAIR|locus:2184163	488	AT5G10190 "AT5G10190" [Arabido	0.824	0.625	0.618	8.2e-99
TAIR|locus:2115430	489	AT4G36790 "AT4G36790" [Arabido	0.805	0.609	0.372	6.5e-51
TAIR|locus:2046313	473	AT2G18590 "AT2G18590" [Arabido	0.810	0.634	0.352	1.5e-42
GENEDB_PFALCIPARUM|PF14_0260	809	PF14_0260 "metabolite/drug tra	0.3	0.137	0.25	0.00011
UNIPROTKB|Q8ILI3	809	PF14_0260 "Metabolite/drug tra	0.3	0.137	0.25	0.00011

TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1131 (403.2 bits), Expect = 1.0e-114, P = 1.0e-114
 Identities = 224/323 (69%), Positives = 257/323 (79%)

Query:     1 MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSS-KSFRSDV 59
             +AP+TFMGIPGWR++FHIVG+ISV+VG LVR+FANDPHF   G   S+Q  S K F ++V
Sbjct:   153 IAPLTFMGIPGWRVAFHIVGVISVIVGVLVRVFANDPHFVKDGVDVSNQPGSRKPFCTEV 212

Query:    60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIA 119
             K L++EA +VIKI SFQIIVAQGVTGSFPWSALSFA MWLEL GFSH KTAFLM LFV A
Sbjct:   213 KDLVREADTVIKIRSFQIIVAQGVTGSFPWSALSFAPMWLELIGFSHGKTAFLMGLFVAA 272

Query:   120 SSLGGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVL 179
             SSLGGLFGG+MGDFLS R PNSGR                              +HGL+L
Sbjct:   273 SSLGGLFGGKMGDFLSTRLPNSGRIILAQISSASAIPLAAILLLVLPDDPSTAAIHGLIL 332

Query:   180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF 239
             V+ GLF+SWNAPATNNPIFAEIVPEKSRTSVYA+D+SFESILSSFAPP+VGILAQHVYG+
Sbjct:   333 VLLGLFVSWNAPATNNPIFAEIVPEKSRTSVYALDKSFESILSSFAPPIVGILAQHVYGY 392

Query:   240 KPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEA 299
             KPIP+GSS + EIATDR NAASLAKALYT+IG+PMA CCFIYSFLY +YP DR+RARMEA
Sbjct:   393 KPIPEGSSRSTEIATDRENAASLAKALYTSIGLPMAACCFIYSFLYRSYPLDRDRARMEA 452

Query:   300 LIESEMQQL--ESSNLPAAVEYS 320
              I+SEM++L  ESSN    +E+S
Sbjct:   453 FIDSEMRELLPESSNRD--IEFS 473

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)]

 Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
 Identities = 190/307 (61%), Positives = 231/307 (75%)

Query:     2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKV 61
             A  +F G+ GWRI+F +V ++SV+VG LVRLFA DPH+ D        V  K F SD++ 
Sbjct:   154 ASKSFNGVAGWRIAFLLVAVVSVIVGILVRLFATDPHYSDRKITK--HVKDKPFWSDIRD 211

Query:    62 LIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASS 121
             L++EAK VIKIPSFQI VAQGV+GSFPWSAL+FA +WLEL GFSH+ TA L+ LF I+ S
Sbjct:   212 LLKEAKMVIKIPSFQIFVAQGVSGSFPWSALAFAPLWLELIGFSHKTTAVLVTLFTISCS 271

Query:   122 LGGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVLVV 181
             LGGLFGG MGD L+ +FPN GR                               HGLVLV+
Sbjct:   272 LGGLFGGYMGDTLAKKFPNGGRIFLSQVSSGSAIPLAAILLIGLPDDPSTAFSHGLVLVI 331

Query:   182 TGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP 241
              GL ISWN  ATN PIFAEIVPE++RTS+YA+DRSFESIL+SFAPP+VG+LAQ++YG+KP
Sbjct:   332 MGLCISWNGAATNGPIFAEIVPERARTSIYALDRSFESILASFAPPIVGMLAQNIYGYKP 391

Query:   242 IPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEALI 301
             IP+GS+++ +I TDRANAASLAKALYT+IGIPM +CC IYSFLY TYPRDR+RA+M+ALI
Sbjct:   392 IPEGSTSSVKIDTDRANAASLAKALYTSIGIPMVICCTIYSFLYCTYPRDRDRAKMQALI 451

Query:   302 ESEMQQL 308
             ESEMQQL
Sbjct:   452 ESEMQQL 458

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
 Identities = 114/306 (37%), Positives = 171/306 (55%)

Query:     1 MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFP-DGGTANSDQVSSKSFRSDV 59
             MA   F GIPGWR +F ++  +S V+G LV LF  DP    +     + +++S S  +D 
Sbjct:   190 MAGSEFWGIPGWRCAFIMMAALSAVIGLLVFLFVVDPRKNIEREELMAHKMNSNSVWNDS 249

Query:    60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIA 119
                +  AKSV+K+ +FQIIVAQG+ GSFPW+A+ F  MW EL GF H +TA L+ +F   
Sbjct:   250 ---LAAAKSVVKVSTFQIIVAQGIIGSFPWTAMVFFTMWFELIGFDHNQTAALLGVFATG 306

Query:   120 SSLGGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMHGLVL 179
              ++G L GG + D +S  +PNSGR                              +  + L
Sbjct:   307 GAIGTLMGGIIADKMSRIYPNSGRVMCAQFSAFMGIPFSIILLKVIPQSTSSYSIFSITL 366

Query:   180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF 239
              + GL I+W   A N P+FAE+VP + RT +YA DR+FE   SSFA P+VGIL++ ++G+
Sbjct:   367 FLMGLTITWCGSAVNAPMFAEVVPPRHRTMIYAFDRAFEGSFSSFAAPLVGILSEKLFGY 426

Query:   240 KPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRDRERARMEA 299
                 +G    +  +   A+A  L+K L + + +P  LCC  Y+ L+  + +DRE A++ +
Sbjct:   427 DS--RGIDPLKGSSVREADA--LSKGLLSMMAVPFGLCCLCYTPLHFVFQKDRENAKIAS 482

Query:   300 LIESEM 305
               E+EM
Sbjct:   483 SKETEM 488

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 112/318 (35%), Positives = 154/318 (48%)

Query:     1 MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDP----------HFPDGGTA--NSD 48
             MA   F GI GWR +F +   +S +VG LV  F +DP          H  D      N+ 
Sbjct:   160 MAGHDFFGISGWRCAFILSATLSTIVGILVFFFVSDPREKKTSSVIVHHDDQHERDENNG 219

Query:    49 QVSSKSFRSDV-KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHE 107
                 +S  S V K      K V K+ +FQIIV QG+ GS PW+A+ F  MW EL GF H 
Sbjct:   220 GTMMESPSSSVWKESWVAIKDVTKLRTFQIIVLQGIVGSVPWNAMLFWTMWFELIGFDHN 279

Query:   108 KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRXXXXXXXXXXXXXXXXXXXXXXXX 167
             + A L  +F    ++G L GG + D +S  FPNSGR                        
Sbjct:   280 QAALLNGIFATGQAIGSLVGGIIADKMSRVFPNSGRLICAQFSVFMGAMFSIVLLRMIPQ 339

Query:   168 XXXXXVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP 227
                   +  + L + GL I+W  PA N+PI AEIVP K RT VYA DR+ E   SSF  P
Sbjct:   340 SVNSFYIFLVTLFLMGLTITWCGPAINSPILAEIVPAKHRTMVYAFDRALEVTFSSFGAP 399

Query:   228 VVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYST 287
             +VGI+++ ++GF    KG    + +      A +L K +   + +P  LCC  Y+ L+  
Sbjct:   400 LVGIMSEKLFGFDA--KG---IDHVNDSGREAEALGKGIMWMMALPFGLCCLCYTPLHFL 454

Query:   288 YPRDRERARMEALIESEM 305
             + +DR+  R  +  E EM
Sbjct:   455 FRKDRKIDRTTSSREVEM 472

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015706 "nitrate transport" evidence=RCA

GENEDB_PFALCIPARUM|PF14_0260 PF14_0260 "metabolite/drug transporter" [Plasmodium falciparum (taxid:5833)]

 Score = 87 (35.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 30/120 (25%), Positives = 54/120 (45%)

Query:   177 LVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG-ILAQH 235
             ++ +  G+   W    T+ PI  +IV ++    + A+  +FE+I SS    ++G  L  H
Sbjct:   689 IISLFMGILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSH 744

Query:   236 VYG-FKPIPKGSSATE-EIATDRANAASLAKALYTAIGIPMALC-CFIYSFLYSTYPRDR 292
             +   +  I K    T   +  ++ N   L+  L      P  L  C +Y+  Y TY +D+
Sbjct:   745 LLNKYDYIDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8ILI3 PF14_0260 "Metabolite/drug transporter, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 87 (35.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
 Identities = 30/120 (25%), Positives = 54/120 (45%)

Query:   177 LVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG-ILAQH 235
             ++ +  G+   W    T+ PI  +IV ++    + A+  +FE+I SS    ++G  L  H
Sbjct:   689 IISLFMGILSGWINIGTHKPIIIDIVKQRHTAFIMALMNAFENIGSS----IIGTFLLSH 744

Query:   236 VYG-FKPIPKGSSATE-EIATDRANAASLAKALYTAIGIPMALC-CFIYSFLYSTYPRDR 292
             +   +  I K    T   +  ++ N   L+  L      P  L  C +Y+  Y TY +D+
Sbjct:   745 LLNKYDYIDKKKIHTVVNVNVNKHNVNVLSDVLLMLTCFPWLLSFCLLYALKY-TYKKDK 803

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015246001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (522 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	370
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-10
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR00900	365	TIGR00900, 2A0121, H+ Antiporter protein	9e-04
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	0.002
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	0.002
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	0.004

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 41/221 (18%), Positives = 88/221 (39%), Gaps = 18/221 (8%)

Query: 6   FMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQE 65
              + GWR +F I+ +++++   L  L    P               K        L+  
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKR--------PKPAEEAPAPLVPA 195

Query: 66  AKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGL 125
            K +++ P   +++A  + G   ++ L++  ++ E+ G S      L+ L  +  ++G L
Sbjct: 196 WKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRL 255

Query: 126 FGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLF 185
             GR+ D L  R      ++L          + A L L L     + +   + L++ G  
Sbjct: 256 LLGRLSDRLGRRRRLLLALLLL---------ILAALGLALLSLTESSLWLLVALLLLGFG 306

Query: 186 ISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP 226
                PA N  + +++ P++ R +   +  +  S+  +  P
Sbjct: 307 AGLVFPALNA-LVSDLAPKEERGTASGLYNTAGSLGGALGP 346

Length = 346

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 29/143 (20%), Positives = 54/143 (37%), Gaps = 13/143 (9%)

Query: 94  FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS 153
                 E  G S  +   L+  F +  +L     GR+ D    R     R++L     + 
Sbjct: 19  LPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR-----RVLL-----IG 68

Query: 154 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM 213
            +  A  LLL+L       ++  ++ V+ GL      PA    + A+  P + R     +
Sbjct: 69  LLLFALGLLLLLFASSLWLLL--VLRVLQGLGGGALFPAAAA-LIADWFPPEERGRALGL 125

Query: 214 DRSFESILSSFAPPVVGILAQHV 236
             +   + ++  P + G+LA   
Sbjct: 126 LSAGFGLGAALGPLLGGLLASLF 148

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 14/167 (8%)

Query: 72  IPSFQIIVAQGVTGSFPWSALS--FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGR 129
           +    ++       SF +  L         E+ G S  +   L++LF +   LG L GG 
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233

Query: 130 MGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWN 189
           + D L       GR  L  +  L    L  LLL + P    +  +  + L++ G  + + 
Sbjct: 234 LSDRL-------GRRRLLLLIGLLLAALGLLLLALAP----SLALLLVALLLLGFGLGFA 282

Query: 190 APATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV 236
            PA      +E+ P ++R +   +  +F S+  +  P + G+L    
Sbjct: 283 FPALLTLA-SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG 328

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 18/129 (13%)

Query: 111 FLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS 170
           +++A F + + LG L  G +G +         R+ L       AI +  L +LV+   P 
Sbjct: 251 WVLAAFGLGALLGALLLGLLGRYF-------KRMALMTG----AIFVIGLAILVVGLTPP 299

Query: 171 TPVMHGLVLVVTGLFISWNAPATNNPI---FAEIVPEKSRTSVYAMDRSFESILSSFAPP 227
                  + +V    I       N P        VP +    V+    S           
Sbjct: 300 NF----PLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLI 355

Query: 228 VVGILAQHV 236
           + G LA H+
Sbjct: 356 LAGPLADHL 364

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 28/143 (19%), Positives = 51/143 (35%), Gaps = 13/143 (9%)

Query: 93  SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL 152
               +  E  G S  +   +++ F +  +LG L  G + D         GR  +  +  L
Sbjct: 20  PALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-------GRRRVLLLGLL 72

Query: 153 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYA 212
                + LL        S+  +  +   + GL      PA    + AE  P K R     
Sbjct: 73  LFALGSLLLAFA-----SSLWLLLVGRFLLGLGGGALYPAAAA-LIAEWFPPKERGRALG 126

Query: 213 MDRSFESILSSFAPPVVGILAQH 235
           +  +   + +   P + G+LA+ 
Sbjct: 127 LFSAGFGLGALLGPLLGGLLAES 149

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 39.5 bits (93), Expect = 0.002
 Identities = 32/154 (20%), Positives = 59/154 (38%), Gaps = 23/154 (14%)

Query: 11  GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVI 70
           GWR +F  + +++++   L+         P    + S        R+ +++L        
Sbjct: 165 GWRATFLAIAVLALLALLLLWKL-----LPPSEISGS---LPGPLRTLLRLL-----RRP 211

Query: 71  KIPSFQIIVAQGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGR 129
            +    +     +TG F  +  ++   +L  + GFS    + ++  F IA  +G L GGR
Sbjct: 212 GVLLGLLATFLFMTGHF--ALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGR 269

Query: 130 MGDFLSARFPNSGRIILAQISSLSAIPLAALLLL 163
           + D    R        L     L A+ L AL   
Sbjct: 270 LADRGPRR-------ALIAALLLLALALLALTFT 296

Length = 394

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 38/180 (21%), Positives = 59/180 (32%), Gaps = 26/180 (14%)

Query: 11  GWRISFHIVGLISVVVGTLVRLFANDP------------HFPDGGTANSDQVSSKSFRSD 58
           GWR  F++ G+  +++  L+  F  +                    A   Q  ++S   +
Sbjct: 169 GWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPE 228

Query: 59  VKVLIQEAKSVIKIPSFQIIVAQG-----VTGSFPWSALSFAAMWLEL----TGFSHEKT 109
            K      +SV K   FQ   A+      +        + F   WL       GFS    
Sbjct: 229 QKATQGTKRSVFKA-LFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA 287

Query: 110 AFLMALFVIASSLGGLFGGRMGDFLSAR----FPNSGRIILAQISSLSAIPLAALLLLVL 165
           A   ALF     +G +  G + D L  R        G +    + S    P   LLL  +
Sbjct: 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAI 347

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	370
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.89
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.84
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.82
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.82
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.8
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.8
PRK11663	434	regulatory protein UhpC; Provisional	99.8
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.79
TIGR00893	399	2A0114 d-galactonate transporter.	99.78
PLN00028	476	nitrate transmembrane transporter; Provisional	99.78
PRK03545	390	putative arabinose transporter; Provisional	99.78
PRK10642	490	proline/glycine betaine transporter; Provisional	99.78
KOG2532	466	consensus Permease of the major facilitator superf	99.78
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.77
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.77
PRK10489	417	enterobactin exporter EntS; Provisional	99.77
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.77
COG2211	467	MelB Na+/melibiose symporter and related transport	99.76
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.76
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.76
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.75
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.75
PRK10429	473	melibiose:sodium symporter; Provisional	99.75
PRK11010	491	ampG muropeptide transporter; Validated	99.75
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.75
PRK12307	426	putative sialic acid transporter; Provisional	99.75
PRK10504	471	putative transporter; Provisional	99.74
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.73
PRK09528	420	lacY galactoside permease; Reviewed	99.73
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.73
PRK09669	444	putative symporter YagG; Provisional	99.72
TIGR00900	365	2A0121 H+ Antiporter protein.	99.72
PRK15011	393	sugar efflux transporter B; Provisional	99.72
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.71
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.71
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.71
PRK11462	460	putative transporter; Provisional	99.71
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.71
PRK09705	393	cynX putative cyanate transporter; Provisional	99.71
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.7
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.7
PRK09952	438	shikimate transporter; Provisional	99.7
PRK03699	394	putative transporter; Provisional	99.7
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.7
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.69
PRK10091	382	MFS transport protein AraJ; Provisional	99.69
PRK15075	434	citrate-proton symporter; Provisional	99.68
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.68
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.67
PRK09874	408	drug efflux system protein MdtG; Provisional	99.67
PF13347	428	MFS_2: MFS/sugar transport protein	99.67
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.67
PRK11043	401	putative transporter; Provisional	99.67
PRK11902	402	ampG muropeptide transporter; Reviewed	99.67
PRK09848	448	glucuronide transporter; Provisional	99.67
PRK03893	496	putative sialic acid transporter; Provisional	99.65
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.65
TIGR00895	398	2A0115 benzoate transport.	99.65
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.65
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.65
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.64
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.64
TIGR00901	356	2A0125 AmpG-related permease.	99.64
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.64
TIGR00891	405	2A0112 putative sialic acid transporter.	99.63
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.63
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.63
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.63
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.63
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.62
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.62
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.62
KOG2533	495	consensus Permease of the major facilitator superf	99.61
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.61
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.6
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.6
PRK05122	399	major facilitator superfamily transporter; Provisi	99.6
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.59
PRK10133	438	L-fucose transporter; Provisional	99.57
PRK10054	395	putative transporter; Provisional	99.56
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.56
PRK03633	381	putative MFS family transporter protein; Provision	99.54
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.54
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.54
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.54
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.53
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.53
PRK12382	392	putative transporter; Provisional	99.53
KOG0569	485	consensus Permease of the major facilitator superf	99.53
PRK10489	417	enterobactin exporter EntS; Provisional	99.52
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.52
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.52
KOG3626	735	consensus Organic anion transporter [Secondary met	99.51
PRK10054	395	putative transporter; Provisional	99.51
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.49
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.49
TIGR00900	365	2A0121 H+ Antiporter protein.	99.48
TIGR00805	633	oat sodium-independent organic anion transporter.	99.48
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.48
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.47
TIGR00898	505	2A0119 cation transport protein.	99.46
PRK11663	434	regulatory protein UhpC; Provisional	99.45
TIGR00895	398	2A0115 benzoate transport.	99.44
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.43
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.43
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.43
PRK05122	399	major facilitator superfamily transporter; Provisi	99.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.43
PRK12382	392	putative transporter; Provisional	99.42
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.42
TIGR00891	405	2A0112 putative sialic acid transporter.	99.41
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.41
TIGR00893	399	2A0114 d-galactonate transporter.	99.4
PRK10504	471	putative transporter; Provisional	99.4
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.4
PRK03545	390	putative arabinose transporter; Provisional	99.4
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.4
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.39
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.37
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.37
PRK03699	394	putative transporter; Provisional	99.37
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.36
PLN00028	476	nitrate transmembrane transporter; Provisional	99.36
PRK10091	382	MFS transport protein AraJ; Provisional	99.35
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.35
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.35
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.35
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.34
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.34
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.34
PRK09874	408	drug efflux system protein MdtG; Provisional	99.33
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.33
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.33
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.33
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.33
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.33
PRK12307	426	putative sialic acid transporter; Provisional	99.32
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.32
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.32
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.31
PRK11043	401	putative transporter; Provisional	99.31
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.3
PRK09528	420	lacY galactoside permease; Reviewed	99.3
PRK03633	381	putative MFS family transporter protein; Provision	99.3
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.29
PRK09705	393	cynX putative cyanate transporter; Provisional	99.29
PRK03893	496	putative sialic acid transporter; Provisional	99.28
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.28
KOG2563	480	consensus Permease of the major facilitator superf	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.27
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.27
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.26
PRK11902	402	ampG muropeptide transporter; Reviewed	99.25
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.24
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.24
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.21
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.19
PTZ00207	591	hypothetical protein; Provisional	99.19
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.18
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.17
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.16
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.16
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.15
PRK10133	438	L-fucose transporter; Provisional	99.15
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.15
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.15
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.14
PRK15011	393	sugar efflux transporter B; Provisional	99.14
PRK11010	491	ampG muropeptide transporter; Validated	99.14
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.14
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.13
TIGR00901	356	2A0125 AmpG-related permease.	99.13
KOG2532	466	consensus Permease of the major facilitator superf	99.11
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.11
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.1
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.1
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.09
TIGR00898	505	2A0119 cation transport protein.	99.07
TIGR00805	633	oat sodium-independent organic anion transporter.	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.03
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.02
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.01
PRK10642	490	proline/glycine betaine transporter; Provisional	99.01
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.99
PRK10429	473	melibiose:sodium symporter; Provisional	98.96
PRK09952	438	shikimate transporter; Provisional	98.95
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.95
PRK15075	434	citrate-proton symporter; Provisional	98.94
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.92
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.88
PRK09669	444	putative symporter YagG; Provisional	98.88
KOG0569	485	consensus Permease of the major facilitator superf	98.87
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.85
PRK11462	460	putative transporter; Provisional	98.84
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.84
KOG2615	451	consensus Permease of the major facilitator superf	98.84
KOG0254	513	consensus Predicted transporter (major facilitator	98.82
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.8
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.75
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.74
PRK09848	448	glucuronide transporter; Provisional	98.73
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.72
PF13347	428	MFS_2: MFS/sugar transport protein	98.7
COG2211	467	MelB Na+/melibiose symporter and related transport	98.69
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.66
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.63
KOG3762	618	consensus Predicted transporter [General function	98.63
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.63
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.62
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.58
PTZ00207	591	hypothetical protein; Provisional	98.57
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.55
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.54
KOG2533	495	consensus Permease of the major facilitator superf	98.54
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.51
KOG0254	513	consensus Predicted transporter (major facilitator	98.51
KOG2615	451	consensus Permease of the major facilitator superf	98.48
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.48
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.47
PRK15462	493	dipeptide/tripeptide permease D; Provisional	98.46
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.41
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.4
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.37
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.34
PF12832	77	MFS_1_like: MFS_1 like family	98.31
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.21
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.17
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.15
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.02
KOG3098	461	consensus Uncharacterized conserved protein [Funct	97.96
PRK03612	521	spermidine synthase; Provisional	97.82
KOG2563	480	consensus Permease of the major facilitator superf	97.8
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.69
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.69
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	97.67
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.56
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.55
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.54
COG2270	438	Permeases of the major facilitator superfamily [Ge	97.45
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	97.42
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.42
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	97.31
COG0477	338	ProP Permeases of the major facilitator superfamil	97.24
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	97.24
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	97.17
KOG2325	488	consensus Predicted transporter/transmembrane prot	97.17
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	97.16
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.12
KOG3762	618	consensus Predicted transporter [General function	96.83
KOG3626	735	consensus Organic anion transporter [Secondary met	96.82
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.79
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	96.52
KOG0637	498	consensus Sucrose transporter and related proteins	96.48
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.21
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	96.05
KOG3810	433	consensus Micronutrient transporters (folate trans	95.88
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.87
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	95.79
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.57
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	94.87
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	94.74
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	94.72
PF02990	521	EMP70: Endomembrane protein 70; InterPro: IPR00424	94.39
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	94.07
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	93.89
COG3202	509	ATP/ADP translocase [Energy production and convers	92.67
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	92.55
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	92.49
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.05
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	90.35
COG4262	508	Predicted spermidine synthase with an N-terminal m	89.49
PF11947	153	DUF3464: Protein of unknown function (DUF3464); In	88.65
KOG3098	461	consensus Uncharacterized conserved protein [Funct	87.8
PRK10263	1355	DNA translocase FtsK; Provisional	86.66
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	86.43
KOG0637	498	consensus Sucrose transporter and related proteins	85.28
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	84.53
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	83.85
KOG3880	409	consensus Predicted small molecule transporter inv	83.78
KOG1277	593	consensus Endosomal membrane proteins, EMP70 [Intr	81.79
KOG2568	518	consensus Predicted membrane protein [Function unk	81.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	81.57
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	81.04

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.89  E-value=3.8e-22  Score=169.52  Aligned_cols=227  Identities=20%  Similarity=0.294  Sum_probs=159.2

Q ss_pred             ccccccCchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCc--cccC--cccchh--hhhhHHHHhhhccchHHHH
Q 017535            5 TFMGIPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSD--QVSS--KSFRSD--VKVLIQEAKSVIKIPSFQI   77 (370)
Q Consensus         5 ~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~--~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~   77 (370)
                      ++..+++||..|++.++++++++++.++..|| |+...-++.++-  +..+  ++..+.  ......-.+.+++||..|.
T Consensus       177 ~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~  256 (448)
T COG2271         177 FFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWL  256 (448)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHH
Confidence            45566799999999999999999999999998 433221111110  0000  000000  1112223457999999888


Q ss_pred             HHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--hhCCCchhHHHHHHHHHH
Q 017535           78 IVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS--ARFPNSGRIILAQISSLS  153 (370)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~--~~~~~~~~~~~~~~~~~~  153 (370)
                      +.+...+.+.. +++..|.|.|+ +..|+|...++...+.+-++++.|++++||++||+-  ||.+       ..+.+.+
T Consensus       257 la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p-------~~~i~~~  329 (448)
T COG2271         257 LALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP-------MALIFML  329 (448)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch-------HHHHHHH
Confidence            77777766666 88889999999 899999999999999999999999999999999975  4433       2222222


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHHH
Q 017535          154 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGIL  232 (370)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~l  232 (370)
                      .+.+....+...+.  .+.++..++++.+|+....... ..-....|..|++..|++.|+...+.++ |.+.+....|++
T Consensus       330 ~i~~~~~~~w~~~~--~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i  406 (448)
T COG2271         330 LITASLVLYWLAPN--GSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYI  406 (448)
T ss_pred             HHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceee
Confidence            22222233332222  2456677788888887654443 4556677999999999999999999999 778889999999


Q ss_pred             HHhhcCCCCC
Q 017535          233 AQHVYGFKPI  242 (370)
Q Consensus       233 ~~~~~g~~~~  242 (370)
                      .|.+ ||...
T Consensus       407 ~d~~-gW~g~  415 (448)
T COG2271         407 ADTW-GWDGG  415 (448)
T ss_pred             EecC-CCcch
Confidence            8885 65543

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.84  E-value=4.9e-19  Score=152.51  Aligned_cols=208  Identities=16%  Similarity=0.242  Sum_probs=143.9

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      +|.++.+.+|||++|++.++++++..+..+..+| |+..+...               ....++..+++|+|..+.....
T Consensus       156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~---------------~~~~~~~~~~l~~p~v~~~l~~  219 (394)
T COG2814         156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSL---------------PGPLRTLLRLLRRPGVLLGLLA  219 (394)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCC---------------CcchhHHHHHhcCchHHHHHHH
Confidence            3678899999999999999999999888888888 32222111               1122233468889996655544


Q ss_pred             H-hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           82 G-VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        82 ~-~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      . +.....|..++|+..++ +..|++....+++...++++.++|++++|+++|| +.|+.       ......+.. ...
T Consensus       220 t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-------l~~~~~l~a-~~~  290 (394)
T COG2814         220 TFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-------LIAALLLLA-LAL  290 (394)
T ss_pred             HHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-------HHHHHHHHH-HHH
Confidence            4 44444577778988888 7899999999999999999999999999999999 66544       122212221 222


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      +.+...+.   +.+...+..++.|+....... .......+ .-|+.+..+.+++....|+|.++|..++|.+.|+. ||
T Consensus       291 l~l~~~~~---~~~~~~~~~~~wg~a~~~~~~-~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~  364 (394)
T COG2814         291 LALTFTGA---SPALALALLFLWGFAFSPALQ-GLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GY  364 (394)
T ss_pred             HHHHHhcc---hHHHHHHHHHHHHHHhhhhhh-HHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ch
Confidence            22222222   233444455556665554333 33344444 33577999999999999999999999999999995 64


Q ss_pred             C
Q 017535          240 K  240 (370)
Q Consensus       240 ~  240 (370)
                      .
T Consensus       365 ~  365 (394)
T COG2814         365 A  365 (394)
T ss_pred             H
Confidence            4

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.82  E-value=6e-19  Score=160.87  Aligned_cols=228  Identities=16%  Similarity=0.139  Sum_probs=138.8

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC--Cc-c-c-cCcc-cchhhhhhHHHH--hhhccchHH
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN--SD-Q-V-SSKS-FRSDVKVLIQEA--KSVIKIPSF   75 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~-~-~-~~~~-~~~~~~~~~~~~--~~~~~~~~~   75 (370)
                      +.+.+.+|||++|++.+++.++..++.++..++++.....+.+  +. + . ...+ ..........+.  .+++++|.+
T Consensus       164 ~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (455)
T TIGR00892       164 QYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGF  243 (455)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchH
Confidence            4556778999999999988776655554444432211000000  00 0 0 0000 000000011111  247788887


Q ss_pred             HHHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH
Q 017535           76 QIIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA  154 (370)
Q Consensus        76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  154 (370)
                      +..+...+..... +...+++|.|+++.|++..+++++.++.+++.+++++++|+++||...+..   +......+.++.
T Consensus       244 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~~~  320 (455)
T TIGR00892       244 LVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPH---VQYLFSFALLFN  320 (455)
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHH---HHHHHHHHHHHH
Confidence            7665544433333 444578899997789999999999999999999999999999997321111   001111111111


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          155 IPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      . + ..++....  .. .+.+.+..++.|++.+...+ ...+++.+.+|+++++++.|+++...++|+++||.+.|.+.+
T Consensus       321 ~-l-~~ll~~~~--~~-~~~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~  394 (455)
T TIGR00892       321 G-L-THLLCALA--GD-YTGLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD  394 (455)
T ss_pred             H-H-HHHHHHHh--ch-HHHHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence            1 1 11111111  12 33345556667777666666 667888899999999999999999999999999999999999


Q ss_pred             hhcCCC
Q 017535          235 HVYGFK  240 (370)
Q Consensus       235 ~~~g~~  240 (370)
                      ..++|.
T Consensus       395 ~~g~~~  400 (455)
T TIGR00892       395 ATKNYK  400 (455)
T ss_pred             hcCCcc
Confidence            874544

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.82  E-value=2.1e-19  Score=154.42  Aligned_cols=236  Identities=36%  Similarity=0.587  Sum_probs=161.0

Q ss_pred             CccccccccC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHH---
Q 017535            2 APMTFMGIPG-WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQI---   77 (370)
Q Consensus         2 ~g~~~~~~~g-Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   77 (370)
                      .|..+....+ |||.|+..++++++++++.+++++||++...++.+...+..+    .....+++.+.+.|++.+..   
T Consensus       176 vgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~----~~ts~~kDl~~l~~~~v~v~~sl  251 (493)
T KOG1330|consen  176 VGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVK----PFTSVWKDLKVLAKIKVFVLSSL  251 (493)
T ss_pred             eeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCC----CccchHHHHHHHHccCceeeehH
Confidence            3555666555 999999999999999999999999998753322221111111    11567778888877776433   


Q ss_pred             --HHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q 017535           78 --IVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  155 (370)
Q Consensus        78 --~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  155 (370)
                        ....+..+...|....+.+..++-.|.+..+..++..+..+++.+|.+++|.++||+.++..+..+.+.-.+.+.+..
T Consensus       252 ~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~  331 (493)
T KOG1330|consen  252 GIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGA  331 (493)
T ss_pred             HHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhh
Confidence              333334444444333444444455666776777777778889999999999999998886665455555555555554


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh-chhhHHHHHHHH
Q 017535          156 PLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQ  234 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~g~l~~  234 (370)
                      +....++...+.....-....+.++++|....+...++..-+..+++|++.|.+++++...+..+.+ +-+|.+.|.+.|
T Consensus       332 ~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd  411 (493)
T KOG1330|consen  332 PLSIPFLFLFPAFTSSSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSD  411 (493)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHH
Confidence            4444333333333333344566677778777777765778888899999999999999988887776 555669999999


Q ss_pred             hhcCCCC
Q 017535          235 HVYGFKP  241 (370)
Q Consensus       235 ~~~g~~~  241 (370)
                      +..||.+
T Consensus       412 ~l~g~~~  418 (493)
T KOG1330|consen  412 KLRGYKP  418 (493)
T ss_pred             HhhCCCc
Confidence            9988775

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.80  E-value=1.2e-17  Score=152.58  Aligned_cols=223  Identities=16%  Similarity=0.209  Sum_probs=130.9

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC---ccccC--cccchhhhhhHHH-HhhhccchHHHHHHHHH
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANS---DQVSS--KSFRSDVKVLIQE-AKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   82 (370)
                      ..|||+.|++.++++++..++.++++||+++....++++   .+...  ....+......+. .+.++|++.++...+..
T Consensus       183 ~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  262 (452)
T PRK11273        183 FNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIAN  262 (452)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHH
Confidence            349999999999888887777777777743221100000   00000  0000000111111 12467888877655544


Q ss_pred             hh-hhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VT-GSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~-~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++ ....++...|+|.|+ +..|++..+++.+..+..++.+++.+++|+++||+++++...   . ......+.. +...
T Consensus       263 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~---~-~~~~~~l~~-~~~~  337 (452)
T PRK11273        263 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA---T-GVFFMTLVT-IATI  337 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcch---H-HHHHHHHHH-HHHH
Confidence            43 334456668999999 568999999999888889999999999999999995433210   0 111111111 1111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhch-hhHHHHHHHHhhcCC
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF-APPVVGILAQHVYGF  239 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~g~l~~~~~g~  239 (370)
                      .+...... . .+...+.++..|.......+ ....+..+.+|++.+|+++|+.++..++++.+ +|.+.|.+.|+. ||
T Consensus       338 ~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~  413 (452)
T PRK11273        338 VYWLNPAG-N-PTVDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GW  413 (452)
T ss_pred             HHHHhccc-C-hHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cc
Confidence            11111111 1 22222334444443322111 22345678899999999999999999998765 799999999987 54


Q ss_pred             C
Q 017535          240 K  240 (370)
Q Consensus       240 ~  240 (370)
                      .
T Consensus       414 ~  414 (452)
T PRK11273        414 D  414 (452)
T ss_pred             h
Confidence            3

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.80  E-value=2.8e-17  Score=150.77  Aligned_cols=213  Identities=19%  Similarity=0.190  Sum_probs=131.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCC--ccc---cCcccchhhhhhHHH-HhhhccchHHHHHHHHHh
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANS--DQV---SSKSFRSDVKVLIQE-AKSVIKIPSFQIIVAQGV   83 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (370)
                      +||..|.+.++++++++++.+++.++ |++....+.++  .+.   .+...........+. .+..+|+|.++...+..+
T Consensus       189 ~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  268 (467)
T PRK09556        189 HVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANI  268 (467)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHH
Confidence            69999999999888887777777665 43221111100  000   000000000011111 224788998776555444


Q ss_pred             hhh-hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           84 TGS-FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        84 ~~~-~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      +.. ..++...|+|.|+ +.+|++..++++......++.+++.+++|+++||+++|+.       .............+.
T Consensus       269 ~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~-------~~~~~~~~~~~~~~~  341 (467)
T PRK09556        269 FLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA-------LVACIALALIIFTLG  341 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch-------HHHHHHHHHHHHHHH
Confidence            433 3455568999999 7799999999999988999999999999999999998865       121111111111111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHHHHH
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQ  234 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~l~~  234 (370)
                      ....  ... ...+.+.++..|+....... .......+.+|++.+|++.|+.+.+.++ |++++|.+.|++.|
T Consensus       342 ~~~~--~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        342 VYQH--ATS-EYMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHHh--cCc-HHHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            1111  112 22333445555543221111 1134566899999999999999999997 66999999999999

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.80  E-value=9e-18  Score=152.56  Aligned_cols=225  Identities=16%  Similarity=0.141  Sum_probs=131.5

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCC---CCccccCcccchhhhhhHHH-H-hhhccchHHHH
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG-GTA---NSDQVSSKSFRSDVKVLIQE-A-KSVIKIPSFQI   77 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~   77 (370)
                      +++.+.+|||+.|++.++++++..++..+.+||++.... ...   +++........+..+...++ + +..++++.++.
T Consensus       168 ~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (434)
T PRK11663        168 GAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYIWL  247 (434)
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHHHH
Confidence            455667899999999988877766655556666332110 000   00000000000000001111 1 13667888666


Q ss_pred             HHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q 017535           78 IVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  155 (370)
Q Consensus        78 ~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  155 (370)
                      +.......... +.+.+|+|.|+ +.+|++..+++...+...++++++.+++|+++||+.+++..  ... .........
T Consensus       248 ~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~--~~~-~~~~~~~~~  324 (434)
T PRK11663        248 LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRG--PMN-LIFAAGILL  324 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcc--HHH-HHHHHHHHH
Confidence            55544443333 44557999999 77899999999999999999999999999999998543221  000 111111111


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          156 PLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                        ....+...+.. . ........+.+|++...... .......+..|++.+|++.|+.++..++|++++|.+.|++.|.
T Consensus       325 --~~~~~~~~~~~-~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~  399 (434)
T PRK11663        325 --SVGSLWLMPFA-S-YVMQAACFFTIGFFVFGPQM-LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI  399 (434)
T ss_pred             --HHHHHHHcccc-c-HHHHHHHHHHHHHHHhhHHH-HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh
Confidence              11111112222 2 22222333444443221111 1234557888889999999999999999999999999999998


Q ss_pred             h
Q 017535          236 V  236 (370)
Q Consensus       236 ~  236 (370)
                      .
T Consensus       400 ~  400 (434)
T PRK11663        400 W  400 (434)
T ss_pred             c
Confidence            7

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.79  E-value=2.9e-17  Score=149.80  Aligned_cols=209  Identities=13%  Similarity=0.139  Sum_probs=135.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhh
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF   87 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (370)
                      +..|||+.+++.+++++++.++.++..||+++.....  +  +.+       .+..+.++.+++||.++..+...++...
T Consensus       168 ~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~--~--~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~~~  236 (437)
T TIGR00792       168 DKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN--I--EKK-------LSLKQIFKALFKNDQLLILCLAYLFYNL  236 (437)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc--c--ccC-------CCHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3569999999999998888777777777643211100  0  000       1234556778899997766555554444


Q ss_pred             hHHHH-HHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           88 PWSAL-SFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        88 ~~~~~-~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      .+... .+.+.|.+ .++ ++...+.+.....++.+++.++.++++||+++|+.       ..++..+....... +...
T Consensus       237 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~-~~~~  307 (437)
T TIGR00792       237 AFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL-------FAGGILLMVLGYLI-FFFA  307 (437)
T ss_pred             HHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHH-HHHc
Confidence            43333 34444443 344 55667777777789999999999999999998865       23332222222112 2111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      +   ...+.+.+..++.|++.+...+ ..++++.|..+       ++.+|.+.|+.+++.+++..+++.+.|.+.+.. |
T Consensus       308 ~---~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~-G  382 (437)
T TIGR00792       308 G---SNLPLILVLIILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII-G  382 (437)
T ss_pred             c---hhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            1   1123334444555666555555 56777777754       566899999999999999999999999999987 7


Q ss_pred             CCC
Q 017535          239 FKP  241 (370)
Q Consensus       239 ~~~  241 (370)
                      |..
T Consensus       383 ~~~  385 (437)
T TIGR00792       383 YVA  385 (437)
T ss_pred             CCc
Confidence            753

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.78  E-value=2.3e-17  Score=148.23  Aligned_cols=227  Identities=16%  Similarity=0.176  Sum_probs=141.5

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCC-CCCCccc---c---CcccchhhhhhHHHHhhhccchHHH
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGG-TANSDQV---S---SKSFRSDVKVLIQEAKSVIKIPSFQ   76 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~~~~   76 (370)
                      +.+.+..+||+.|++.+++.++..++.++..+++++++.. .+++++.   .   +....+..+......++.+++|.++
T Consensus       139 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (399)
T TIGR00893       139 GWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVW  218 (399)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHH
Confidence            3455678999999999988888777776666664332211 1000000   0   0000000012233456788888866


Q ss_pred             HHHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH
Q 017535           77 IIVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA  154 (370)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  154 (370)
                      ......+..... .....+.|.|+ +.+|.++.+.+++.....++.+++.++.|+++||+++|+...   ..........
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~  295 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL---VFARKTAIIA  295 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch---hHHHHHHHHH
Confidence            655544444444 44557899999 778999999999999999999999999999999999986311   0001111111


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          155 IPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      .....+.......... .+.........+++.+ ..+ ...+++.+..|++.|+++.|+.+.+.++++.++|.+.|.+.|
T Consensus       296 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~  372 (399)
T TIGR00893       296 GLVLSLLMFATNYVNI-PYAALALVALGFFGLG-AGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAA  372 (399)
T ss_pred             HHHHHHHHHHhccchh-HHHHHHHHHHHHhchh-hhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhcc
Confidence            1111111111111111 2222222222222333 455 678899999999999999999999999999999999999998


Q ss_pred             hh
Q 017535          235 HV  236 (370)
Q Consensus       235 ~~  236 (370)
                      ..
T Consensus       373 ~~  374 (399)
T TIGR00893       373 TT  374 (399)
T ss_pred             CC
Confidence            76

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.78  E-value=2.7e-17  Score=150.84  Aligned_cols=207  Identities=15%  Similarity=0.147  Sum_probs=118.9

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhh-hhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT-GSF   87 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   87 (370)
                      ..|||++|++.+++++++.++.+++.+++++... ++..++ .+ ...   ....+.+++.++++.++.+.+.++. ...
T Consensus       194 ~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~-~~~~~~-~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (476)
T PLN00028        194 FTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNY-RELKKS-GT-MPK---DSFSKVLRYGVTNYRTWILALTYGYSFGV  267 (476)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCch-hhHHhc-Cc-ccc---ccHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence            3589999999999988877777666555322110 000000 00 000   1122345667788886554443333 333


Q ss_pred             hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 017535           88 PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  166 (370)
Q Consensus        88 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      .+...+++|.|+ +.+|++..+++.+.++..++.+++++++|+++||+++|+..+.+.....+...+...  ....+...
T Consensus       268 ~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i--~~~~~~~~  345 (476)
T PLN00028        268 ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGV--FCIWLGRA  345 (476)
T ss_pred             HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHH--HHHHhccc
Confidence            345557889998 778999999999999999999999999999999999885432222222222222111  11111111


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHH
Q 017535          167 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (370)
                        .. .....+.+++.+++.+...+ ..+++..+. .++.+|++.|+.+...++|+.++|.+
T Consensus       346 --~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~~~g~~~g~~~~~g~lg~~i~~~l  402 (476)
T PLN00028        346 --NS-LGAAIVVMILFSIFVQAACG-ATFGIVPFV-SRRSLGVISGLTGAGGNVGAVLTQLL  402 (476)
T ss_pred             --ch-HHHHHHHHHHHHHHHHHhhh-hhcccCccc-ChhhchhhhhhhhccccHHHHHHHHH
Confidence              11 22222333344444333333 445555564 45679999999866555555555443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.78  E-value=4.8e-17  Score=145.94  Aligned_cols=202  Identities=15%  Similarity=0.161  Sum_probs=134.3

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHH-HH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIV-AQ   81 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   81 (370)
                      ++.+.+++|||++|++.++++++..++.++..|++++++                  +...++.++++|+|.++... ..
T Consensus       153 ~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  214 (390)
T PRK03545        153 GRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH------------------SGSLKSLPLLFRRPALVSLYLLT  214 (390)
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC------------------cchHHHHHHHHhCcHHHHHHHHH
Confidence            345567789999999999888777666665555532110                  01123345688888865433 33


Q ss_pred             HhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++.....+...++++.++ +..|++..+++.+.....++.+++.++.|++.||+++|..        ..+..+..... .
T Consensus       215 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--------~~~~~~~~~~~-~  285 (390)
T PRK03545        215 VVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL--------LIAIALLLVCL-L  285 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--------HHHHHHHHHHH-H
Confidence            333333444557788888 6689999999999999999999999999999999876632        22222211111 1


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+....  + ..+.+.+..++.|++.+...+ ...+.+.+..| +.++++.|+.+...++|..+||.+.|++.|..
T Consensus       286 ~l~~~~--~-~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~  356 (390)
T PRK03545        286 LLLPAA--N-SEWHLSVLSIFWGIAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL  356 (390)
T ss_pred             HHHHHh--c-hHHHHHHHHHHHHHHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            111111  1 133344455666666555444 44566667655 57899999999999999999999999999987

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.78  E-value=3.4e-17  Score=151.00  Aligned_cols=141  Identities=12%  Similarity=0.162  Sum_probs=93.9

Q ss_pred             hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           86 SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      ...+....|+|.|+ +.+|++..+.++......++.+++.++.|+++||+|||+.       +.++.+.........+..
T Consensus       264 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~-------~~~~~~~~~~~~~~~~~~  336 (490)
T PRK10642        264 VTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF-------VILGSVALFVLAIPAFIL  336 (490)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHHH
Confidence            34456668999999 6789998888887777888999999999999999999865       222222111111111111


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .. ... ...+.+..++.+++.+.... ....++.+.+|++.|+++.|+.+.+..+++.++|.+.|++.+..
T Consensus       337 ~~-~~~-~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        337 IN-SNV-IGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST  405 (490)
T ss_pred             Hh-CCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11 111 22233334444444333333 44666778899999999999866667778889999999998865

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.78  E-value=3e-18  Score=153.80  Aligned_cols=229  Identities=20%  Similarity=0.205  Sum_probs=148.2

Q ss_pred             ccccccc-cCchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCccccCcccc--hhhhhhHHHHhhhccchHHHHH
Q 017535            3 PMTFMGI-PGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQVSSKSFR--SDVKVLIQEAKSVIKIPSFQII   78 (370)
Q Consensus         3 g~~~~~~-~gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (370)
                      ++++.+. +||+++|++.|++++++.++++++..| |.+++...+++.+.-.+...  ...+...-+++++++++.+|.+
T Consensus       184 sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai  263 (466)
T KOG2532|consen  184 SGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAI  263 (466)
T ss_pred             HHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHH
Confidence            4566676 999999999999999999999888887 65544433222211000000  0001123357789999997776


Q ss_pred             HHHH-hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           79 VAQG-VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        79 ~~~~-~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      +... +..+..+.+..|+|.|+ +.+|++..+.|++.++..+...+..+++|.++||+.+|.......+...-.......
T Consensus       264 ~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~  343 (466)
T KOG2532|consen  264 WISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGP  343 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHH
Confidence            6554 44555566779999999 889999999999999999999999999999999998763333333444443333333


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          157 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      ..+++.+.+......+..+.++.+..++. |...+ -.+....+. .|++.+..+|+.+++..+.+.++|.+.|.+..
T Consensus       344 ai~l~~l~~~~~~~~~~a~~~l~~~~~~~-g~~~~-Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~  418 (466)
T KOG2532|consen  344 AVFLLVLAFTSDEHRLLAVILLTIAIGLS-GFNIS-GFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT  418 (466)
T ss_pred             HHHHHeeeecCCCcchHHHHHHHHHHHHc-ccchh-hhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence            33333333333222222222222222221 11111 112222232 56779999999999999999999999998774

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.77  E-value=1.1e-16  Score=143.00  Aligned_cols=210  Identities=13%  Similarity=0.111  Sum_probs=139.3

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhh
Q 017535            7 MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS   86 (370)
Q Consensus         7 ~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (370)
                      .+..|||+.|++.++++++..++.++++++|++++..++.+.           .......++.+++|.++......+...
T Consensus       150 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       150 INLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEV-----------SVKDYTVWEMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCccc-----------chhhhhHHHHHcCccHHHHHHHHHHHh
Confidence            456799999999999988888777777776543221111000           011123446778888665544433333


Q ss_pred             hh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           87 FP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        87 ~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      .. .....+.+.|.+++|.+..+.+.+.+...++.++++++.|++.||++||+.       ..++..+....... +...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~~~-~~~~  290 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-------MSIVFGISAVGMAA-MLFI  290 (377)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-------hhHHHHHHHHHHHH-HHHc
Confidence            33 333355666777789999999999999999999999999999999998875       23332222222211 1111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      + ... ...+....++.+++.+...+ ...+++.+.+|+++++++.|+.+....+|+.++|.+.|.+.+.. ||
T Consensus       291 ~-~~~-~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~  360 (377)
T TIGR00890       291 P-MLN-DVLFLATVALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEI-GF  360 (377)
T ss_pred             c-cch-hHHHHHHHHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhh-ch
Confidence            2 111 22223334455665555555 56778889999999999999999999999999999999999876 53

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.77  E-value=5.4e-17  Score=144.99  Aligned_cols=228  Identities=18%  Similarity=0.241  Sum_probs=140.7

Q ss_pred             ccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCc--cc---cCcccchhhhhhHHHHhhhccchHHHHH
Q 017535            5 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA-NSD--QV---SSKSFRSDVKVLIQEAKSVIKIPSFQII   78 (370)
Q Consensus         5 ~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (370)
                      .+....+||+.|++.+++.++..++.+++.|++++.+...+ ++.  +.   ......+.........+.++++|.++.+
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       142 GIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHH
Confidence            34456799999999998888777777777676432211110 000  00   0000000001122234567888886665


Q ss_pred             HHHHhhhh-hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           79 VAQGVTGS-FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      ....+... .......+.|.|+ +.+|+++.+.+.+.....++.+++.++.|++.||..+++..      ..........
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~------~~~~~~~~~~  295 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG------PLAVFFMALI  295 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcch------HHHHHHHHHH
Confidence            44443333 3345557899999 77899999999999999999999999999999997554431      1111111111


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          157 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...+........ .......+..+..|+......+ ....+..+..|++.||++.|+.+.+.++++.++|.+.|.+.|..
T Consensus       296 ~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  373 (379)
T TIGR00881       296 IVSLLVYWLNPA-ANPLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF  373 (379)
T ss_pred             HHHHHHHhcCcc-hhHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhh
Confidence            111111111111 1122333444555554433333 44567788999999999999999999999999999999999987


Q ss_pred             cCCCC
Q 017535          237 YGFKP  241 (370)
Q Consensus       237 ~g~~~  241 (370)
                       ||..
T Consensus       374 -g~~~  377 (379)
T TIGR00881       374 -GWAG  377 (379)
T ss_pred             -cccc
Confidence             6553

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.77  E-value=5.5e-17  Score=146.89  Aligned_cols=209  Identities=12%  Similarity=0.120  Sum_probs=135.3

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+..|||+.|++.++..++..++. +.+|+++.++..+    +.    .   .++..+.++.++++|.++...+..
T Consensus       166 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~----~~----~---~~~~~~~~~~~~~~~~~~~~~~~~  233 (417)
T PRK10489        166 GGLLIAAGGVAWNYGLAAAGTFITLLPL-LRLPALPPPPQPR----EH----P---LRSLLAGFRFLLASPVVGGIALLG  233 (417)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhCCCCCCCCccc----cc----c---hHHHHHHHHHHHcChHHHHHHHHH
Confidence            4455667799999998877766554443 4445422111000    00    0   123344556678888865544433


Q ss_pred             hhhhhhHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFPWSALSFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      ++.........+.|.|++ .+|+++...+++.+...++.+++.++.+++.||.++++.       ...+.++.. +..+.
T Consensus       234 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-------l~~~~~~~~-~~~~~  305 (417)
T PRK10489        234 GLLTMASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-------MLLSTLGSF-LAVGL  305 (417)
T ss_pred             HHHHHHHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-------HHHHHHHHH-HHHHH
Confidence            333333444578899994 499999999999999999999999999999988544332       222222221 11111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      + ...  + .++...+..++.|++.+...+ ...+++.+..|++.||+++|+.+...++|..+||.+.|++.+..
T Consensus       306 ~-~~~--~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~  375 (417)
T PRK10489        306 F-GLM--P-MWILAVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM  375 (417)
T ss_pred             H-Hcc--c-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence            1 111  2 233344555666666665555 55678889999999999999999999999999999999999987

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.77  E-value=8.1e-17  Score=142.35  Aligned_cols=206  Identities=12%  Similarity=-0.029  Sum_probs=129.5

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      +..+.+++|||+.|++.++++++..++.++.+||+++.+.+.  .   ..       ++..+++++++|+|.++.+....
T Consensus       134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~--~---~~-------~~~~~~~~~ll~~~~~~~~~~~~  201 (368)
T TIGR00903       134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG--F---GF-------KDAVKEFGALAGRKDLWIIGAIL  201 (368)
T ss_pred             HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--c---ch-------HHHHHHHHHHHcChhHHHHHHHH
Confidence            455667889999999999998888887877888743221110  0   00       11223567899999976655544


Q ss_pred             -hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           83 -VTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        83 -~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                       +.....+++.+|+|.|+++.|++.. .+.......+.+.++   .++++||..||+.+.....   ....+.. .....
T Consensus       202 ~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~---~~~~~~a-~~~~~  273 (368)
T TIGR00903       202 GFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIR---AAALLIA-AFFLA  273 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHH---HHHHHHH-HHHHH
Confidence             4444456777999999977788865 555555555544444   5889999876643211111   1111111 11111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      + ......  . .......+.+++.....+ ..+++.+|.+|++.||++.|+.+..+++++..+|.+.+.+.
T Consensus       274 ~-~~~~~~--~-~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~  340 (368)
T TIGR00903       274 L-AFELNR--L-ALFAFIGIAGLLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI  340 (368)
T ss_pred             H-HHcccc--H-HHHHHHHHHHHhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence            1 111111  1 222333444454444444 56788899999999999999999999999999999988777

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.76  E-value=1.5e-15  Score=133.92  Aligned_cols=212  Identities=14%  Similarity=0.125  Sum_probs=154.3

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP   88 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (370)
                      ..||+...++.++++++..+++++..+|+..+....++.   .+       .+..+.+..+++||.+...++..++....
T Consensus       182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~---~~-------~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~  251 (467)
T COG2211         182 ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTG---VK-------LKLKDSFLLIFKNRPLLLLLLMNLLLFIA  251 (467)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCccc---cc-------ccHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            569999999999999999999999888854322211110   00       33445566789999988888877777776


Q ss_pred             HHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 017535           89 WSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  166 (370)
Q Consensus        89 ~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      +.+. +....|. ..+|.+.............+.+++.++..++.+|+|+|+.       ..++.++.++.....+ ..+
T Consensus       252 ~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~-------~~~~~~~~~i~~~~~~-f~~  323 (467)
T COG2211         252 FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL-------FLIGLLLLAVGYLLLY-FTP  323 (467)
T ss_pred             HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH-------HHHHHHHHHHHHHHHH-hhc
Confidence            5555 4445555 4678888888887777888888889999999999999986       4444444433333333 233


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          167 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                        ....+.+.+..++.+++.+...+ ..+++++|..+       .+..|..+|.+.++..+|.+++..+.|++++.. ||
T Consensus       324 --~~~~~l~~~~~~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~-Gy  399 (467)
T COG2211         324 --AGSVVLIVVALIIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI-GY  399 (467)
T ss_pred             --CcchHHHHHHHHHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence              22244455555666777777777 88999999765       566899999999999999999999999999998 88


Q ss_pred             CCC
Q 017535          240 KPI  242 (370)
Q Consensus       240 ~~~  242 (370)
                      .+.
T Consensus       400 v~~  402 (467)
T COG2211         400 VPN  402 (467)
T ss_pred             CCC
Confidence            865

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.76  E-value=2.2e-17  Score=151.62  Aligned_cols=226  Identities=14%  Similarity=0.033  Sum_probs=135.7

Q ss_pred             cccccc-cCchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCccc---c-CcccchhhhhhHHHHhhhccchHHHH
Q 017535            4 MTFMGI-PGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQV---S-SKSFRSDVKVLIQEAKSVIKIPSFQI   77 (370)
Q Consensus         4 ~~~~~~-~gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (370)
                      +.+.+. .|||++|++.++++++..++++++.+| |+.++...+++.+.   . +.+..+  ......++++++++.++.
T Consensus       188 ~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  265 (465)
T TIGR00894       188 GWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGS--TRQSLPIKAIPKSLPVWA  265 (465)
T ss_pred             HHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCC--CCCCCCHHHHhcCHHHHH
Confidence            345556 499999999999988887777777666 43222211111000   0 000000  011123567888988666


Q ss_pred             HHHHHhh-hhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH-HHHHHHHHH
Q 017535           78 IVAQGVT-GSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII-LAQISSLSA  154 (370)
Q Consensus        78 ~~~~~~~-~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~-~~~~~~~~~  154 (370)
                      .....+. ....+.+.+|+|.|+ +.+|++..+.+++.++..++.+++.+++|+++||+++|+....... .........
T Consensus       266 ~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  345 (465)
T TIGR00894       266 IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGL  345 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            5554444 444456668999999 7799999999999999999999999999999999987755322211 111111111


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          155 IPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      ...............  .....+.+.+.+.+.+...+ .......+..| +.+|.+.|+.++.+++++.++|.+.|.+.+
T Consensus       346 ~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~  421 (465)
T TIGR00894       346 GPGIFAYALPYLSAA--FYLTIIILTLANAVSSGPLA-GVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILS  421 (465)
T ss_pred             HHHHHHHHHHHcCCc--hHHHHHHHHHHHHHhhhhhh-hhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeC
Confidence            111111111111111  12222223333333333333 33445556555 479999999999999999999999998876


Q ss_pred             h
Q 017535          235 H  235 (370)
Q Consensus       235 ~  235 (370)
                      .
T Consensus       422 ~  422 (465)
T TIGR00894       422 Q  422 (465)
T ss_pred             C
Confidence            5

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.76  E-value=2.2e-16  Score=142.45  Aligned_cols=211  Identities=13%  Similarity=0.012  Sum_probs=135.5

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHh
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV   83 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
                      +.+.++.|||++|++.+++.++..+..++..||+++....+     .+       .++..++++.++++|.++.......
T Consensus       158 ~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  225 (406)
T PRK15402        158 AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK-----LS-------LKELGRDYKLVLKNRRFVAGALALG  225 (406)
T ss_pred             HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-----cc-------HHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            44556789999999988888776665555555532211100     00       0334556678899998766554443


Q ss_pred             hhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           84 TGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        84 ~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      +.... +...++.|.++ +.+|+++.+.+.......++.+++.++.|+++||+++|+.       ..++..+........
T Consensus       226 ~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-------~~~~~~~~~~g~~~~  298 (406)
T PRK15402        226 LVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-------IRMGLWPMVAGLLLA  298 (406)
T ss_pred             HHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHH
Confidence            33332 33345678888 7799999999988887888899999999999999988864       222222221111111


Q ss_pred             -HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          162 -LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       162 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       +....... ..+.+.+..++.|++.+...+ ........ .+++++|++.+++++...++..+|+.+.+++.+..
T Consensus       299 ~~~~~~~~~-~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        299 ALATVISSH-AYLWLTAGLSLYAFGIGLANA-GLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HHHHHcccc-cHHHHHHHHHHHHHHHHHHhh-hHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence             11111111 233344555666666665555 44444443 34578999999999999999999999999987765

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.75  E-value=9.9e-17  Score=144.79  Aligned_cols=210  Identities=16%  Similarity=0.140  Sum_probs=131.7

Q ss_pred             ccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHH-HHHHh
Q 017535            5 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQGV   83 (370)
Q Consensus         5 ~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   83 (370)
                      .+.+..+||+.|++.+++.++..++..+++||+++....+.+.+  .+       +...+...+..+.+..+.. ...++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  231 (406)
T PRK11551        161 LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK--QR-------APVLRALFGEGRATATLLLWISYFF  231 (406)
T ss_pred             HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch--hh-------hhhHHHHhhhhhhhHHHHHHHHHHH
Confidence            44567899999999887777666666666677432211110000  00       1111111111112222222 22222


Q ss_pred             hhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 017535           84 TGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL  163 (370)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (370)
                      .....+....|.|.|+++.|+++.+.+.+.....++.+++.++.|++.||+++|+.       .....+... .....+.
T Consensus       232 ~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~~~~~~~-~~~~~~~  303 (406)
T PRK11551        232 TLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV-------VLLIYAGIL-ASLAALA  303 (406)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHH-HHHHHHH
Confidence            22333455578899997789999999999999999999999999999999998865       222211111 1111111


Q ss_pred             hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          164 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       ..  +. .+.+.+..++.|++.+...+ ...++..+.+|++.|+++.|+.+.+..+++.++|.+.|.+.+..
T Consensus       304 -~~--~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        304 -AA--PS-FAGMLLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             -hc--Cc-HHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence             11  12 22333444555665544445 56788889999999999999999999999999999999999875

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.75  E-value=9e-17  Score=146.25  Aligned_cols=221  Identities=15%  Similarity=0.217  Sum_probs=130.4

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCC--Cccc-cC-cccchhhhhhHHH-HhhhccchHHHHHHHH
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG-GTAN--SDQV-SS-KSFRSDVKVLIQE-AKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~--~~~~-~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (370)
                      ...|||+.|++.++++++..++.++++||+++... .+.+  +.+. .. ....+...+..+. .+.++|++.++.....
T Consensus       180 ~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (438)
T TIGR00712       180 WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIA  259 (438)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHH
Confidence            35699999999999888877777777777432211 0000  0000 00 0000000001111 1247788887766544


Q ss_pred             Hhhh-hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH-HH-H
Q 017535           82 GVTG-SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA-IP-L  157 (370)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~-~~-~  157 (370)
                      ..+. ...++..+|+|.|+ +..|+++.+++++..+..++++++.+++|+++||+++++..       ..+.... .. .
T Consensus       260 ~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-------~~~~~~~~~~~~  332 (438)
T TIGR00712       260 NVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRG-------ATGVFFMTLVTI  332 (438)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCccc-------HHHHHHHHHHHH
Confidence            4333 33356668999999 56899999999999999999999999999999999765431       1111111 11 1


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh-chhhHHHHHHHHhh
Q 017535          158 AALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQHV  236 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~g~l~~~~  236 (370)
                      ....+...+. .. .+......+..|++...... .......+.+|++.+|+++|+.+...++++ +++|.+.|.+.|..
T Consensus       333 ~~~~~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~  409 (438)
T TIGR00712       333 AVIVYWMNPA-GN-PLVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  409 (438)
T ss_pred             HHHHHHhcCC-Cc-hHHHHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc
Confidence            1111111111 11 22222333444443221111 112345688899999999999999988875 68999999999987


Q ss_pred             cCC
Q 017535          237 YGF  239 (370)
Q Consensus       237 ~g~  239 (370)
                       ||
T Consensus       410 -g~  411 (438)
T TIGR00712       410 -GW  411 (438)
T ss_pred             -cc
Confidence             53

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.75  E-value=5e-16  Score=142.55  Aligned_cols=213  Identities=13%  Similarity=0.112  Sum_probs=131.5

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhH
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW   89 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (370)
                      .||++...+.+++.++..++.++..||+........++  +++       ....+.++.+++||.++.++...+......
T Consensus       177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~~-------~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~  247 (473)
T PRK10429        177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAE--GSH-------LTLKDIVALIYKNDQLSCLLGMALAYNIAS  247 (473)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCceecCCcccccccc--ccC-------CCHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            46888888888877776666666566632111100000  000       223445566789998777666555544444


Q ss_pred             HHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH-hCCC
Q 017535           90 SAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL-VLPD  167 (370)
Q Consensus        90 ~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  167 (370)
                      ... .+.+.|.+....+....+.+.....++.+++.++.++++||+|+|+.       ..++..+.++.....+. ....
T Consensus       248 ~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~-------~~~~~~~~~~~~~~~~~~~~~~  320 (473)
T PRK10429        248 NIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRIL-------WAGASIFPVLSCGVLLLMGLAA  320 (473)
T ss_pred             HHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-------HHHHHHHHHHHHHHHHHHhccC
Confidence            443 34443445544466667777776678889999999999999999975       23332222211111111 1111


Q ss_pred             CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          168 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                       +...+.+.+..++.|++.+...+ ..++++.|..+       .+..|..+|..+++..++.++++.+.|++.+.. ||+
T Consensus       321 -~~~~~~~~i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~-Gy~  397 (473)
T PRK10429        321 -PHNALLIVIAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI-GYV  397 (473)
T ss_pred             -chhHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence             12233344444555555555555 56788888855       556788999999999999999999999999988 776


Q ss_pred             C
Q 017535          241 P  241 (370)
Q Consensus       241 ~  241 (370)
                      .
T Consensus       398 ~  398 (473)
T PRK10429        398 P  398 (473)
T ss_pred             C
Confidence            4

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.75  E-value=3.7e-16  Score=143.67  Aligned_cols=212  Identities=14%  Similarity=0.168  Sum_probs=129.6

Q ss_pred             cccc-ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHH-HHHH
Q 017535            5 TFMG-IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-VAQG   82 (370)
Q Consensus         5 ~~~~-~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~   82 (370)
                      ++.+ ..|||.+|++.+++.++..+..+ +.|||++....+  +.  ..       +...++++++++++..+.. ....
T Consensus       165 ~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~--~~--~~-------~~~~~~l~~~~~~~~~~~~ll~~~  232 (491)
T PRK11010        165 WLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP--KT--LE-------QAVVAPLRDFFGRNNAWLILLLIV  232 (491)
T ss_pred             HHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc--cc--hh-------hhHHHHHHHHHcCcCHHHHHHHHH
Confidence            4445 46999999999988776655444 457754321100  00  00       1123345567766664433 3333


Q ss_pred             hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH-HHH
Q 017535           83 VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMA-LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP-LAA  159 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~-~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~  159 (370)
                      ++....+....+.+.|+ +.+|++..+.+.+.. ...++.++|.+++|+++||+++|+.       ..++.++... ...
T Consensus       233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~-------l~i~~~l~~l~~l~  305 (491)
T PRK11010        233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRA-------LMIFGILQGVSNAG  305 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHH
Confidence            33333334446778887 779999999999875 5567999999999999999998764       2222221111 111


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      ....... ... .+.+....++..+..+...+ ...++..+..+++..++..|+.+....+|..+++.+.|++.|.. ||
T Consensus       306 ~~~l~~~-~~~-~~~l~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~  381 (491)
T PRK11010        306 YWLLSIT-DKN-LYSMGAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GW  381 (491)
T ss_pred             HHHHHhc-ccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Ch
Confidence            1111111 122 22222233332222232233 44677788899999999999999999999999999999999987 53

>TIGR00897 2A0118 polyol permease family

Probab=99.75  E-value=8.5e-16  Score=138.34  Aligned_cols=213  Identities=12%  Similarity=0.081  Sum_probs=129.8

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH-
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG-   82 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (370)
                      +++.+.+||+..++......++..++.+++.+++++++..+  + +.    ..   .+..+.++.++|+|.++...... 
T Consensus       163 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~  232 (402)
T TIGR00897       163 SYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ--T-RE----KF---SELGKAATILFTNPNVLLGGMVRI  232 (402)
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc--C-Cc----ch---hhHHHHHHHHHcChhHHHHHHHHH
Confidence            45566788776666554443433444444445432211110  0 00    00   22334566788999876554433 


Q ss_pred             hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH-HHHHH
Q 017535           83 VTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP-LAALL  161 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  161 (370)
                      +.....++..+|.|.|++++|++..+.+.+.+...+++.++.++.|+++||+++|+..      .......... ...+.
T Consensus       233 ~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~------~~~~~l~~~~~~~~l~  306 (402)
T TIGR00897       233 INTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV------RWFGGVGCGIFTLALY  306 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH------HHHHHHHHHHHHHHHH
Confidence            3333445666899988877999999999988888999999999999999999987651      1111111111 11111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..... ....+...+..++.|++.+...+ . .+...+. ++++||++.|+.+...++++.++|.+.|.+.+..
T Consensus       307 ~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~-~-~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  377 (402)
T TIGR00897       307 YIPQHF-GHSFAVALIIAIALGIFLAGYVP-L-AAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF  377 (402)
T ss_pred             HHHHcc-CCcHHHHHHHHHHHHHHHHHHHH-H-HHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            111111 11233334445556665554433 2 3445554 5568999999999999999999999999999986

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.75  E-value=1.7e-16  Score=144.23  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=104.5

Q ss_pred             HHhhhccchHHHHHHHHHhhhh----hhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCC
Q 017535           65 EAKSVIKIPSFQIIVAQGVTGS----FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPN  140 (370)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  140 (370)
                      .++.+++++.++.....+....    ..+....++|.|++..|+++.+.+.+.+...++.+++.++.|++.||+++|+. 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-  298 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-  298 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence            4567788877544332222111    22234568899997789999999999888899999999999999999998864 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH
Q 017535          141 SGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI  220 (370)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  220 (370)
                            ...+..+....... +...+. .. ...+....+..++......+ ....++.+.+|++.+|++.|+.+.+..+
T Consensus       299 ------~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~  368 (426)
T PRK12307        299 ------FSIGLLMSFLFIFP-LFRIPQ-DN-YLLLGACLFGLMATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAAT  368 (426)
T ss_pred             ------HHHHHHHHHHHHHH-HHHHcc-cc-HHHHHHHHHHHHHhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhH
Confidence                  22222222221111 111121 11 12122222222222111122 3456778999999999999999999999


Q ss_pred             hhchhhHHHHHHHHhh
Q 017535          221 LSSFAPPVVGILAQHV  236 (370)
Q Consensus       221 ~~~~~~~~~g~l~~~~  236 (370)
                      ++.++|.+.|++.+..
T Consensus       369 ~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        369 SGTFNSMAATWLGITM  384 (426)
T ss_pred             HHHHHHHHHHHHHHcc
Confidence            9999999999999876

>PRK10504 putative transporter; Provisional

Probab=99.74  E-value=3.4e-16  Score=144.03  Aligned_cols=162  Identities=15%  Similarity=0.153  Sum_probs=114.7

Q ss_pred             hhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535           68 SVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII  145 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  145 (370)
                      +++|||.+...+...++....+... .+.|.|++ .+|.++.+.+++..+..++.+++.++.+++.||+++|+.      
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~------  329 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV------  329 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH------
Confidence            4788898777666555555554444 56788884 689999999999988888888999999999999998865      


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchh
Q 017535          146 LAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFA  225 (370)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  225 (370)
                       ...+..+..+... .+....... +.+.+.+..++.|++.+...+ ....+..+.+|++.+|.++|+.++..++|..+|
T Consensus       330 -~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig  405 (471)
T PRK10504        330 -LVATTLGLALVSL-LFMLVALLG-WYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIG  405 (471)
T ss_pred             -HHHHHHHHHHHHH-HHHhccccc-cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHH
Confidence             2333332222212 222122222 222233344555666655555 567777888999999999999999999999999


Q ss_pred             hHHHHHHHHhhcCCC
Q 017535          226 PPVVGILAQHVYGFK  240 (370)
Q Consensus       226 ~~~~g~l~~~~~g~~  240 (370)
                      +.+.|.+.+.. ||.
T Consensus       406 ~~i~g~ll~~~-g~~  419 (471)
T PRK10504        406 VTIAGLLLGLF-GQQ  419 (471)
T ss_pred             HHHHHHHHHHh-hhh
Confidence            99999999987 553

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.73  E-value=8.6e-16  Score=137.83  Aligned_cols=211  Identities=13%  Similarity=0.041  Sum_probs=130.5

Q ss_pred             ccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhh
Q 017535            5 TFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT   84 (370)
Q Consensus         5 ~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
                      ++.+++|||.+|++.+++.++..+..++..|++++++. .  +            +...+++++++|+|.++..+...++
T Consensus       155 ~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~-~--~------------~~~~~~~~~~l~~~~~~~~~~~~~l  219 (390)
T TIGR02718       155 VLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPE-A--P------------LARRASLFRFFRRPLAWSLLALALL  219 (390)
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccc-c--c------------hhhHHHHHHHHcCcCHHHHHHHHHH
Confidence            56678899999999998887766665454333221110 0  0            1112345678888886554443333


Q ss_pred             hhh-hHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHH
Q 017535           85 GSF-PWSALSFAAMWLELTGFSHEKTAFLMALFV-IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL  162 (370)
Q Consensus        85 ~~~-~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (370)
                      ... ......+.+.|+++.|+++.+.+.+..... +..+++.+++|++.||+++|+.       ...+..+........+
T Consensus       220 ~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-------l~~~~~~~~~~~~~~~  292 (390)
T TIGR02718       220 SAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRT-------FILGVGLAGSLALLWF  292 (390)
T ss_pred             HHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHH
Confidence            333 344557788888778999999999888776 4667889999999999998865       2222222211111111


Q ss_pred             H-hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC-CchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          163 L-VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE-KSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       163 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      . ...........+.....+.++..+...+ ...+...+..++ +.+|+.+++.+...++|..++|.+.|.+.|.. ||
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~  369 (390)
T TIGR02718       293 AQAAFWLAPGIAVAWSCSAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GY  369 (390)
T ss_pred             HHHHcccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc
Confidence            1 1111111111222222333333344433 445555555665 78999999999999999999999999999987 53

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.73  E-value=1.2e-16  Score=144.84  Aligned_cols=210  Identities=11%  Similarity=0.095  Sum_probs=128.4

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhH
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW   89 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (370)
                      .+|+++|++.++++++..++.++..++++++....+++....+       +...++.+..+|+|.++.+.+..+.....+
T Consensus       167 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~  239 (420)
T PRK09528        167 INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANAS-------AVSLKDALALLKLPKFWFLVLYVIGVACFY  239 (420)
T ss_pred             cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccc-------cccHHHHHHHccCCCeEeehHHHHHHHHHH
Confidence            4899999998888777666655554443222111110000000       223445567888888554443333333333


Q ss_pred             H-HHHHHHHHH-HH---hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           90 S-ALSFAAMWL-EL---TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        90 ~-~~~~~~~~~-~~---~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      . ...+.|.|+ +.   .+.+..+.+.+.+...++.+++.++.|++.||+++|+.       ..++..+.... ... ..
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~~~~l~~~~-~~l-~~  310 (420)
T PRK09528        240 DVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-------LLLAGTIMAVR-IIG-SG  310 (420)
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-------hHHHHHHHHHH-HHH-HH
Confidence            2 224567766 33   35677788898888888999999999999999999876       23322222211 111 11


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH-HHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      +..+   .+.+....++.++..+...+ ....++.+..|++.+++..++ .++...+|.+++|.+.|++.|.. ||.
T Consensus       311 ~~~~---~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~  382 (420)
T PRK09528        311 FATG---PLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQ  382 (420)
T ss_pred             hccc---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-Cch
Confidence            2222   22334445555555554444 445677888899988888766 67788899999999999999987 543

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.73  E-value=4.7e-16  Score=138.87  Aligned_cols=206  Identities=14%  Similarity=0.102  Sum_probs=131.6

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+.+|||++|++.+++.++..++.++++||+++....+  ..           +   .+.+..++++.++......
T Consensus       145 ~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~---~~~~~~~~~~~~~~~~~~~  208 (375)
T TIGR00899       145 AFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA--LT-----------R---LEVRGLLASRDTRLLFVAC  208 (375)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc--cC-----------c---chhhhhhcCcchHHHHHHH
Confidence            445667789999999999887777776666667633221110  00           0   0122356666655443333


Q ss_pred             hhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      +..... .....+.|.|+ +++|.++.+.+.+.....+..+++.++.|++.||+++|+.       ..++..+..... .
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~-~  280 (375)
T TIGR00899       209 TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL-------MLLAALAGVAFY-T  280 (375)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH-------HHHHHHHHHHHH-H
Confidence            322332 23345778888 7889999999988877777788889999999999998865       222222221111 1


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      .+. ..  + ..+.+.+..++.|++.+...+ ....+..+..|+ +++++.++.+...++|..++|.+.|.+.+.. ||
T Consensus       281 ~~~-~~--~-~~~~~~~~~~~~g~~~g~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~  352 (375)
T TIGR00899       281 GLA-AD--N-SLWALLMLQLLNAIFIGILAG-IGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SY  352 (375)
T ss_pred             HHH-HH--H-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc
Confidence            111 11  1 123334444555665555555 556777787765 4779999999999999999999999999876 53

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK09669 putative symporter YagG; Provisional

Probab=99.72  E-value=3.1e-15  Score=136.43  Aligned_cols=207  Identities=14%  Similarity=0.196  Sum_probs=132.8

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP   88 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (370)
                      ..||+..+.+.+++++++.+++++..||+..++.   ++    +       .+.++.++.++|||.++.++...++....
T Consensus       179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~---~~----~-------~~~~~~~~~~~~n~~~~~l~~~~~~~~~~  244 (444)
T PRK09669        179 QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEV---DN----S-------SSVWKDLKLLLGNSQWRIMFIFNVVLLTA  244 (444)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCC---cC----C-------CCHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence            4589999999998888777766666666322110   00    0       23456677899999987766655544444


Q ss_pred             HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 017535           89 WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  167 (370)
Q Consensus        89 ~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      .........|+ +....++...+.+.....+..+++.++.++++||+|+|+.       ...+..+..+.....+. .+.
T Consensus       245 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~~-~~~  316 (444)
T PRK09669        245 VVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRA-------FKWTIVAFVILSALIFF-IPP  316 (444)
T ss_pred             HHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHHHHH-hCc
Confidence            43333333444 4332234444555555677888899999999999998865       22222222211111221 221


Q ss_pred             CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          168 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                        ...+.+.+..++.|++.+...+ ..++++.|..+       .+..|..+|+.+++.++|.++++.+.|.+.+.. ||+
T Consensus       317 --~~~~~~~~~~~i~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~-Gy~  392 (444)
T PRK09669        317 --SNVWLIFALNILFNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV-DYV  392 (444)
T ss_pred             --chHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence              2233344455566776666666 77888888775       455788899999999999999999999999988 886


Q ss_pred             C
Q 017535          241 P  241 (370)
Q Consensus       241 ~  241 (370)
                      .
T Consensus       393 ~  393 (444)
T PRK09669        393 G  393 (444)
T ss_pred             C
Confidence            4

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.72  E-value=4.3e-16  Score=138.50  Aligned_cols=214  Identities=13%  Similarity=0.107  Sum_probs=141.9

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+..|||+.|++.++..++..++.++ .+.|+.++.++++.+    +   +..++..+.++.++|+|.++......
T Consensus       148 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (365)
T TIGR00900       148 GGLMYATLGIKWAIWVDAVGFAISALLIVS-VRIPELAASEIQALS----N---AVLRDTREGIKFVLKNPLLRTLLLLA  219 (365)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-cccccCCCccccccc----h---hHHHHHHhHHHHHHcCcHHHHHHHHH
Confidence            445567789999999887766555444333 333222111110000    0   01133445566788888866555444


Q ss_pred             hhhh-hhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           83 VTGS-FPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        83 ~~~~-~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      +... ...... .+.|.|. +.+|.+..+.+.+.....++.+++.++.+++.||+++++.       ...+..+..... 
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~-  291 (365)
T TIGR00900       220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-------MTGAIFVIGLAI-  291 (365)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-------HHHHHHHHHHHH-
Confidence            4333 334444 6778888 4589999999999999999999999999999999887754       222222221111 


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+. ....  +.+...+..++.|++.+...+ ...+++.+.+|++.|+++.|+.++..++++.++|.+.|.+.|..
T Consensus       292 ~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       292 LVVG-LTPP--NFPLFLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HHHH-hhch--hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            1111 1111  234455666777877777676 67888999999999999999999999999999999999999875

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.72  E-value=1.7e-15  Score=135.89  Aligned_cols=202  Identities=11%  Similarity=0.103  Sum_probs=122.6

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccc-hH-HHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKI-PS-FQIIVA   80 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~   80 (370)
                      ++.+.+++|||+.|++.++++++..++.+++.||+++.+....  .+  .       +.       ..++ +. ++.+..
T Consensus       163 ~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~-------~~-------~~~~~~~~~~~~~~  224 (393)
T PRK15011        163 AYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT--GT--L-------EA-------PRRNRRDTLLLFVI  224 (393)
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc--cc--c-------cc-------cccccccHHHHHHH
Confidence            4456678899999999998888877777776776432211100  00  0       00       0112 11 222222


Q ss_pred             HHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           81 QGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      ........+....+.|.|+ +.+|+++.+.+.+.+...++.+++.++.|+++||+++|+.       ...+....... .
T Consensus       225 ~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-------~~~~~~~~~~~-~  296 (393)
T PRK15011        225 CTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-------MRVAAVAGVCF-Y  296 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHH-H
Confidence            2222222233336789888 7789999999998887778888999999999999998864       22222222111 1


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .... ...  . .+...+..+..++..+...+ ....+..+..|+ .+|++.++++...++|+.++|.+.|.+.|..
T Consensus       297 ~~~~-~~~--~-~~~~l~~~~l~~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~  367 (393)
T PRK15011        297 AGML-MAH--S-PAILLGLQLLNAIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIW  367 (393)
T ss_pred             HHHH-HHh--h-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111 111  1 12222233333333333333 335566777775 5999999999999999999999999999876

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.2e-15  Score=130.48  Aligned_cols=208  Identities=18%  Similarity=0.147  Sum_probs=142.9

Q ss_pred             cccccC---chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhH-HHHhhhccchHHHHHHHH
Q 017535            6 FMGIPG---WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLI-QEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         6 ~~~~~g---Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   81 (370)
                      +....|   ||.+..+..+..++..++.++..+|.++++...               +... ..++.+++++..|.+.+.
T Consensus       162 v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~---------------~~~~~~~~~~v~~~~~~W~lsll  226 (417)
T COG2223         162 VAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV---------------KPQLPAQLKAVFSNKDTWLLSLL  226 (417)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc---------------cccchhHHHHHhcCcchHHHHHH
Confidence            344567   999999998888888888888888733322111               1111 445678888886655544


Q ss_pred             Hhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      ....+.. .++..++|.|+ +++|.++.+++.+.....+.+.+.++++|+++||+|.++.       .......+..+..
T Consensus       227 Y~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-------~~~~f~~~~~~~~  299 (417)
T COG2223         227 YFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-------TLAVFVGMALAAA  299 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-------HHHHHHHHHHHHH
Confidence            4444444 45558999999 8999999999999999999999999999999999999876       2333233322222


Q ss_pred             HHHHhCCCC--CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhc
Q 017535          160 LLLLVLPDD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVY  237 (370)
Q Consensus       160 ~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  237 (370)
                      +.....+..  ....+.....++..+++.+.-.. .++.++..++|+ +.|.+.|+...++.+|+..-|...|...+.++
T Consensus       300 ~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg  377 (417)
T COG2223         300 LLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTG  377 (417)
T ss_pred             HHHccccccccCcchHHHHHHHHHHHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcc
Confidence            222222111  12233333444445555554444 567777777765 59999999999999999999999999999884

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.71  E-value=9.2e-16  Score=141.63  Aligned_cols=225  Identities=14%  Similarity=0.043  Sum_probs=144.9

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc----------------ccCcccchhhh-----
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQ----------------VSSKSFRSDVK-----   60 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-----   60 (370)
                      +++++.+++||||.|++...++++..++.++++|+++.++..+.+...                ......+....     
T Consensus       150 lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (495)
T PRK14995        150 VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTL  229 (495)
T ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            466788899999999999888877777666666663222111100000                00000000000     


Q ss_pred             ---------hhHHHH--------hhhccchHHHHHHHHHhhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHH
Q 017535           61 ---------VLIQEA--------KSVIKIPSFQIIVAQGVTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASS  121 (370)
Q Consensus        61 ---------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~  121 (370)
                               ....+.        .+++|+|.+.......+.... .++...+.|.|+ ..+|+++.++++...+..++..
T Consensus       230 ~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~  309 (495)
T PRK14995        230 LTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASG  309 (495)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence                     000000        257788886555444433333 345557889999 6789999999999999999999


Q ss_pred             HhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccc
Q 017535          122 LGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEI  201 (370)
Q Consensus       122 ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  201 (370)
                      ++.++.|++.||+++|+.       ...+..+....... +........ .+......++.|++.+...+ .....+.+.
T Consensus       310 ~~~~~~g~l~~r~g~~~~-------~~~g~~~~~~~~~~-l~~~~~~~~-~~~~~~~~~l~G~g~g~~~~-~~~~~~~~~  379 (495)
T PRK14995        310 FSGPIAGILVSRLGLRLV-------ATGGMALSALSFYG-LAMTDFSTQ-QWQAWGLMALLGFSAASALL-ASTSAIMAA  379 (495)
T ss_pred             HHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHHH-HHHhcCCCc-hHHHHHHHHHHHHhHHHHHH-HHHHHHHhc
Confidence            999999999999998754       23332222211111 111121222 23344556677777777666 667777888


Q ss_pred             cCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          202 VPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +|+++++.+.++.++..++|+.+|+.+.|.+.+..
T Consensus       380 ~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~~  414 (495)
T PRK14995        380 APPEKAAAAGAIETMAYELGAGLGIAIFGLLLSRS  414 (495)
T ss_pred             CCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998753

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.71  E-value=3.9e-16  Score=140.79  Aligned_cols=221  Identities=15%  Similarity=0.149  Sum_probs=130.3

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC-CCCCCcc--------c-----cCccc-chhhhhhHHHHhhhccc
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDG-GTANSDQ--------V-----SSKSF-RSDVKVLIQEAKSVIKI   72 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~--------~-----~~~~~-~~~~~~~~~~~~~~~~~   72 (370)
                      +..|||+.|++.++++++..++.++++||+++... ..+++++        .     .++.. .+........++.++ +
T Consensus       163 ~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  241 (412)
T TIGR02332       163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T  241 (412)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhc-C
Confidence            35799999999999888877777777787443211 0000000        0     00000 000001112233444 4


Q ss_pred             hHHHHHHHHH-hhhhhhHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHH
Q 017535           73 PSFQIIVAQG-VTGSFPWSALSFAAMWLELT--GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQI  149 (370)
Q Consensus        73 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~  149 (370)
                      +.++.....+ +.....+.+.+|+|.|++++  |.+..+++.+.....++.++|.+++|+++||+++|+..      ...
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~------~~~  315 (412)
T TIGR02332       242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHH------TAL  315 (412)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHH------HHH
Confidence            6655544443 33444456668999999553  67888899999999999999999999999999876430      111


Q ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          150 SSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      ...+.... ..+.. .. ... .. ....+.+.+++.....+ ..+....+..|++.|++++|+.+...++|++++|.+.
T Consensus       316 ~~~~~~~~-~~~~~-~~-~~~-~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~  389 (412)
T TIGR02332       316 PYLFAAAG-WLLAS-AT-DHN-LI-QLLGIIMASMGSFSAMA-IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLI  389 (412)
T ss_pred             HHHHHHHH-HHHHH-hc-CCH-HH-HHHHHHHHHHHhhhhhh-HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            11111111 11111 11 111 11 11111222222222222 2334445678899999999999999999999999999


Q ss_pred             HHHHHhhcCCCC
Q 017535          230 GILAQHVYGFKP  241 (370)
Q Consensus       230 g~l~~~~~g~~~  241 (370)
                      |.+.|..++|..
T Consensus       390 g~i~~~~g~~~~  401 (412)
T TIGR02332       390 GILKDATGSFNS  401 (412)
T ss_pred             ccccccCCCCch
Confidence            999998756554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11462 putative transporter; Provisional

Probab=99.71  E-value=1.9e-14  Score=131.24  Aligned_cols=205  Identities=7%  Similarity=0.115  Sum_probs=124.8

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhH
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW   89 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (370)
                      .||+....+.+++++++..++++..||+.+.+..        +       ....+.++.+++||.++.++...++.....
T Consensus       180 ~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~--------~-------~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~  244 (460)
T PRK11462        180 LGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT--------T-------TSMREDLRDIWQNDQWRIVGLLTIFNILAV  244 (460)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc--------C-------CCHHHHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            4788888888888777776666655553221110        0       124456678899999877665555444443


Q ss_pred             HHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           90 SAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        90 ~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      ... .....|.+...-++...+.+.....++.+++.+++++++||+++|+.       ...+..+..+.... +...+..
T Consensus       245 ~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~-------~~~~~~~~~~~~~~-~~~~~~~  316 (460)
T PRK11462        245 CVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI-------FWWTNALLAVISLA-MFFVPMQ  316 (460)
T ss_pred             HHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-------HHHHHHHHHHHHHH-HHHhchh
Confidence            333 22333334333344445566667788889999999999999998854       12111211111111 1112222


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                      .  .+.+.+..++.|++.+...+ ..++++.|..+       .+..|..++..++..++|.++++.+.|++.+.. ||..
T Consensus       317 ~--~~~~~~~~~l~g~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~-Gy~~  392 (460)
T PRK11462        317 A--SITMFVFIFVIGVLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG-GYDA  392 (460)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence            1  11222333445555544444 55777787766       555677788888999999999999999999987 8864

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.71  E-value=6.5e-15  Score=133.26  Aligned_cols=219  Identities=19%  Similarity=0.214  Sum_probs=154.8

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHH-HHHHHHHhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSF-QIIVAQGVTGSF   87 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   87 (370)
                      ..+-|..+.+.++.-++..+..++++|+++.++..+..     ........++.++.+|++.|.|.. +.++..+++.-.
T Consensus       222 ~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-----~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg  296 (477)
T PF11700_consen  222 TWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG-----SSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDG  296 (477)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-----hhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            34568899999999888888888888875432111100     011112235566667777778884 445555666666


Q ss_pred             hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH---
Q 017535           88 PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL---  163 (370)
Q Consensus        88 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  163 (370)
                      ..+++.....|. +.+|++..+...+..+..+.+++|+++.|++.||+|.|..+   +  +.+..++...+....++   
T Consensus       297 ~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~---~--l~~~l~~~~~i~~~g~~G~~  371 (477)
T PF11700_consen  297 VNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR---T--LLISLILWIIIPLYGLFGFW  371 (477)
T ss_pred             HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---H--HHHHHHHHHHHHHHHHHHhh
Confidence            667778888888 79999999999999999999999999999999999998331   1  22222222111112121   


Q ss_pred             hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          164 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      .........+.+.+..++.|++.|...+ ...++.++..|+++.+..+|++.+.....+.+||.+.|.+.+.+++
T Consensus       372 ~~~~g~~~~~~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~  445 (477)
T PF11700_consen  372 PSFFGLKSPWEFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS  445 (477)
T ss_pred             hcccCcccHHHHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            1111122234466666778888888777 7899999999999999999999999999999999999999999843

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.71  E-value=1.1e-15  Score=137.01  Aligned_cols=158  Identities=16%  Similarity=0.115  Sum_probs=104.4

Q ss_pred             hhccchHHHHHHHHH-hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           68 SVIKIPSFQIIVAQG-VTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      +.++++..+...... +.....+...+|+|.|++++|++..+++.+.++..++.++++++.|++.||+++|+.       
T Consensus       200 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-------  272 (393)
T PRK09705        200 RVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-------  272 (393)
T ss_pred             ccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-------
Confidence            345566654443333 333333455689999996689999999999999999999999999999999988754       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-CCchhHHHHHHHHHHHHhhchh
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-EKSRTSVYAMDRSFESILSSFA  225 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~  225 (370)
                      ..++..+... ....+...+.. . .. +.  .++.|++.+...| .......+..+ ++.+|+.+|+.+.+.++++.++
T Consensus       273 ~~~~~~l~~~-~~~~~~~~~~~-~-~~-~~--~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~g  345 (393)
T PRK09705        273 LMLALVLQLV-GFCGFIWLPLQ-L-PV-LW--AMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLA  345 (393)
T ss_pred             HHHHHHHHHH-HHHHHHHccch-H-HH-HH--HHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222221 11211112221 1 11 21  2234555454445 44445555554 5679999999999999999999


Q ss_pred             hHHHHHHHHhhcCC
Q 017535          226 PPVVGILAQHVYGF  239 (370)
Q Consensus       226 ~~~~g~l~~~~~g~  239 (370)
                      |.+.|++.|..++|
T Consensus       346 p~~~G~l~~~~g~~  359 (393)
T PRK09705        346 PWFSGVLRSISGNY  359 (393)
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999999998543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.70  E-value=2.9e-15  Score=136.18  Aligned_cols=202  Identities=15%  Similarity=0.125  Sum_probs=116.7

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHH-HHhh-hh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA-QGVT-GS   86 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~   86 (370)
                      .+|||++|++.++++++.. .....+||+++.+.     ++          .....++++++|+|..+.... ..+. ..
T Consensus       194 ~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~~-----~~----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  257 (432)
T PRK10406        194 EWGWRIPFALGAVLAVVAL-WLRRQLDETSQQET-----RA----------LKEAGSLKGLWRNRRAFIMVLGFTAAGSL  257 (432)
T ss_pred             ccchHHHHHHHHHHHHHHH-HHHhcCCCCchHHH-----hh----------hcccccHHHHHhhHHHHHHHHHHHHHHHH
Confidence            6799999998777766543 22233344221100     00          000112456777877554433 3333 33


Q ss_pred             hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           87 FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        87 ~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ..+...+|+|.|+ +.+|++..+.+...++..++..++.++.|+++||++||+.       ..+...+........+...
T Consensus       258 ~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~-------~~~~~~~~~~~~~~~~~~~  330 (432)
T PRK10406        258 CFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS-------MLCFGSLAALFTVPILSAL  330 (432)
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHHHHHHHH
Confidence            4466668999999 6789999999988888888888889999999999998864       2222221111111111111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHHHHHhh
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQHV  236 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~l~~~~  236 (370)
                      ........ ....+....+..+...+ ..+.+..|.+|++.|+++.|+.+.+.++ .+...|.+.+. .+..
T Consensus       331 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~  399 (432)
T PRK10406        331 QNVSSPYA-AFGLVMCALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSI  399 (432)
T ss_pred             HcCCcHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHh
Confidence            11111111 11111212222222223 4467788999999999999999887765 34557777774 4554

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.70  E-value=2.2e-15  Score=134.66  Aligned_cols=207  Identities=14%  Similarity=0.003  Sum_probs=137.5

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+++|||+.|++.+++.+ +.++.+...|++++++..+  ++   +       ....+.+++++|+|.++......
T Consensus       148 ~g~l~~~~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~---~-------~~~~~~~~~~l~~~~~~~~l~~~  214 (382)
T TIGR00902       148 FGGLIGMFDEQNILAILTAGLA-FMLIGFLIKPTIPPKDAIP--ED---E-------SQGDSAFIALLKNPMNLRFLAAV  214 (382)
T ss_pred             HHHHHHHcChhHHHHHHHHHHH-HHHHHHHcCCCCCCCcccc--cc---c-------cccchhHHHHHcChHHHHHHHHH
Confidence            5667788999999988765533 2333333333322111100  00   0       11122356788999977665544


Q ss_pred             hhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      ++.... ....++.|.|+++.|.++.+.|.+.+...++.+++.++.+++.||++.|+.       +.++.+..... ...
T Consensus       215 ~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-------l~~~~~~~~~~-~~~  286 (382)
T TIGR00902       215 CLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-------LLISAIACVGR-WAI  286 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-------HHHHHHHHHHH-HHH
Confidence            443333 445578899997799999999999988888999999999999999988865       33333222211 111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHH-HHHHhhchhhHHHHHHHHhh
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRS-FESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~g~l~~~~  236 (370)
                      + ..   ....+.+....++.|+..+...+ ....++.+. |++.++++.++++. ...+|..++|.++|++.|..
T Consensus       287 ~-~~---~~~~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~  356 (382)
T TIGR00902       287 I-GA---IEAFPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL  356 (382)
T ss_pred             H-Hh---HhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            1 11   22234455667777877777777 667788876 88889999999874 56788899999999999987

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK09952 shikimate transporter; Provisional

Probab=99.70  E-value=2.3e-15  Score=136.93  Aligned_cols=210  Identities=13%  Similarity=0.071  Sum_probs=120.8

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHH-H-HHHhhh
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQII-V-AQGVTG   85 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~   85 (370)
                      ..+|||++|++.+++.++. +.....+||+++....+.+.++ .+ ..    ..   ..+.++++|..+.. . ..++..
T Consensus       194 ~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~-~~-~~----~~---~~~~l~~~~~~~~~~~~~~~~~~  263 (438)
T PRK09952        194 LSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAA-AK-KR----IP---VIEALLRHPGAFLKIIALRLCEL  263 (438)
T ss_pred             hccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhccc-cc-cc----CC---HHHHHHHchHHHHHHHHHHHHHH
Confidence            3589999999887765442 2222333442211000000000 00 00    01   11234566664333 2 223333


Q ss_pred             hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           86 SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      ...|...+|.|.|+ +.+|++......+....++..+++.++.|+++||++||+.       ...+.++........+..
T Consensus       264 ~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~-------~~~~~~~~~~~~~~~~~~  336 (438)
T PRK09952        264 LTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRV-------YITGALIGTLSAFPFFMA  336 (438)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-------HHHHHHHHHHHHHHHHHH
Confidence            34455668999998 7789988766666666677888899999999999998865       222222222111111111


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHH-HHhhchhhHHHHHHHHhh
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE-SILSSFAPPVVGILAQHV  236 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~g~l~~~~  236 (370)
                      ...... .+.+.+..++.+++.+...+ ..++++.|.+|.+.|+++.++.+... .+++.++|.+.|++.+..
T Consensus       337 ~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~  407 (438)
T PRK09952        337 LEAQSI-FWIVFFSIMLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF  407 (438)
T ss_pred             HHcCCh-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111111 22223333444555555455 56888899999999999999966554 488899999999999865

>PRK03699 putative transporter; Provisional

Probab=99.70  E-value=2e-15  Score=135.66  Aligned_cols=201  Identities=16%  Similarity=0.115  Sum_probs=123.9

Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHH-HHHhhh
Q 017535            7 MGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIV-AQGVTG   85 (370)
Q Consensus         7 ~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   85 (370)
                      .+..|||++|++.+++.++..++.++ .+.|+..+... ++  ..        ..    .+..+ ++.++... ..++..
T Consensus       156 ~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~-~~--~~--------~~----~~~~~-~~~~~~~~~~~~~~~  218 (394)
T PRK03699        156 ARSIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAP-KA--DK--------PV----AKEKW-GIGVLFLAIAALLYI  218 (394)
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCc-cc--cC--------cc----ccccC-ChHHHHHHHHHHHHH
Confidence            34679999999988877766554432 22232111100 00  00        00    01111 33433333 333333


Q ss_pred             hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           86 SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        86 ~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      ...+....|+|.|+ +.+|+++.+.+.+.+.+.++..+++++.|+++||+++|+.       ......+... ....+. 
T Consensus       219 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~-------l~~~~~~~~~-~~~~~~-  289 (394)
T PRK03699        219 LAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI-------LTVLAGLALV-LMYLFV-  289 (394)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH-------HHHHHHHHHH-HHHHHH-
Confidence            33455668999999 7789999999999999999999999999999999998865       2222222221 112221 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      ...+.   ..+.+..+..|++.+...+ ...+...+..| +.++...+....+.++|+.++|.+.|++.+.. |+
T Consensus       290 ~~~~~---~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~  358 (394)
T PRK03699        290 NTDDP---SHLLYAILGLGFFSSAIYT-TIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GL  358 (394)
T ss_pred             HcCCc---hHHHHHHHHHHHHHHHHHH-HHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-Cc
Confidence            12211   1233445566666655555 44555566555 44678888888899999999999999999987 53

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.70  E-value=3.1e-15  Score=134.03  Aligned_cols=207  Identities=15%  Similarity=0.102  Sum_probs=131.5

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+.+|||++|++.+++.++..++.++..||+++.+...      +       .+..++.+++++++|.++......
T Consensus       149 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~~~~~~~~~~~~~~~~  215 (385)
T TIGR00710       149 GGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI------Q-------ISTYFETFLLLLKSKMFWGYALIY  215 (385)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC------C-------HHHHHHHHHHHHcCchhHHHHHHH
Confidence            345566789999999998888777776666666543221110      0       023345566788888866554433


Q ss_pred             hhhh-hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGS-FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      .... ..+....+.|.++ +.+|+++.+.+.+.....++.+++.++.|++.||+++|+.       ...+..+.......
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-------~~~~~~~~~~~~~~  288 (385)
T TIGR00710       216 GASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL-------LRMGLILFAVSAVL  288 (385)
T ss_pred             HHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHH
Confidence            3333 3344456778888 6899999999999999999999999999999999998865       22222221111111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHH
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  231 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  231 (370)
                      ..............+....++.|++.+...+ .......+..| +.++++.++.+.....++.+.+.+.+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       289 LEITAILGLGSWAMIIGPMMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111111111233334445556666666566 55666677666 569999999999888777766666663

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.70  E-value=1.9e-15  Score=136.36  Aligned_cols=163  Identities=12%  Similarity=0.025  Sum_probs=110.0

Q ss_pred             HhhhccchHHHHHHHHHhhhhhh-HHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 017535           66 AKSVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELTGFSH--------EKTAFLMALFVIASSLGGLFGGRMGDFLSA  136 (370)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~--------~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  136 (370)
                      .+.++|+|.++.+....++.... .....+.|.|+++.|.++        ...+.+.++..+..+++.++.|+++||+|+
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            34678888865554444433333 233366788886666553        566888888899999999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHH-
Q 017535          137 RFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR-  215 (370)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-  215 (370)
                      |+.       +.++.++......+... ........+.+.+..++.|++.+...+ ....++.+.+|++.|+++.|+.+ 
T Consensus       281 r~~-------l~~~~~~~~v~~~l~~~-~~~~~~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~  351 (418)
T TIGR00889       281 KKV-------MLLSLVAWALRFGFFAY-GDPEYFGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTL  351 (418)
T ss_pred             HHH-------HHHHHHHHHHHHHHHHH-cCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHH
Confidence            875       33333332222112211 111111133344556666766666555 56778899999999999999997 


Q ss_pred             HHHHHhhchhhHHHHHHHHhhc
Q 017535          216 SFESILSSFAPPVVGILAQHVY  237 (370)
Q Consensus       216 ~~~~~~~~~~~~~~g~l~~~~~  237 (370)
                      +...+|.++||.+.|++.|..+
T Consensus       352 ~~~~lg~~iGp~l~G~l~~~~g  373 (418)
T TIGR00889       352 MCNGFGSLLGYILSGVMVEKMF  373 (418)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhc
Confidence            5678999999999999999873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.69  E-value=5.6e-15  Score=132.02  Aligned_cols=203  Identities=13%  Similarity=0.059  Sum_probs=125.3

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP   88 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (370)
                      ..+||.++++..++.++..++.+++.++++..                   +...++.+.++|+|..|.+.+..++.+..
T Consensus       207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~-------------------~~~~~~~~~vlk~~~~Wllslly~~tFG~  267 (462)
T PRK15034        207 VMSLANAAWIWVPLLAIATIAAWSGMNDIASS-------------------RASIADQLPVLQRLHLWLLSLLYLATFGS  267 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc-------------------ccCHHHHHHHhCCCchhHHHHHHHHHHHH
Confidence            45699999898888887777777665553221                   11234556789999966665555555555


Q ss_pred             HHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 017535           89 WSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  167 (370)
Q Consensus        89 ~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      |..+ .++|.|++. .++.........+..+...++++++|+++||+|+++.       ..++.+...+.....+...+.
T Consensus       268 fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v-------l~~~~i~~~i~~~~~~l~lp~  339 (462)
T PRK15034        268 FIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV-------TLINFIFMAIFSALLFLTLPG  339 (462)
T ss_pred             HHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence            4444 589999833 2333333333334467788899999999999999876       333333232222222222332


Q ss_pred             CC-ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC---------------------CchhHHHHHHHHHHHHhhchh
Q 017535          168 DP-STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE---------------------KSRTSVYAMDRSFESILSSFA  225 (370)
Q Consensus       168 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---------------------~~~g~~~~~~~~~~~~~~~~~  225 (370)
                      .. ...+...+.++.+.++.|.... .++-++...+|+                     ++.|.+.|+.+..+.+|+++-
T Consensus       340 ~~~~~~~~~~~~~~~l~~~~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~  418 (462)
T PRK15034        340 TGSGNFIAFYAVFMGLFLTAGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFI  418 (462)
T ss_pred             ccccHHHHHHHHHHHHHHHhcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchh
Confidence            21 2233333333333333333333 445556666653                     258899999999999999999


Q ss_pred             hHHHHHHHHhhcCC
Q 017535          226 PPVVGILAQHVYGF  239 (370)
Q Consensus       226 ~~~~g~l~~~~~g~  239 (370)
                      |.+.|...+..+++
T Consensus       419 p~~~g~~~~~~g~~  432 (462)
T PRK15034        419 PQAFGMSLNMTGSP  432 (462)
T ss_pred             hHHHHHHHHHcCCc
Confidence            99999999888553

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.69  E-value=6.6e-15  Score=131.68  Aligned_cols=207  Identities=13%  Similarity=0.165  Sum_probs=120.0

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+.+|||++|++.+++.++..+..++..|++++++  +  .             ...+.+ +.+|++..+......
T Consensus       147 ~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~--~--~-------------~~~~~~-~~~~~~~~~~~~~~~  208 (382)
T PRK10091        147 GTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA--K--G-------------GLREQF-HFLRSPAPWLIFAAT  208 (382)
T ss_pred             HHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc--c--c-------------CHHHHH-HHhcChHHHHHHHHH
Confidence            345667789999999999887776666656666642211  0  0             001111 345666655443333


Q ss_pred             hhhh-hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGS-FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      .+.. ..+...++.+.++ +.+|+++.+.+++.+...++.+++.++.|++.||+++|+.       ...+..+.......
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-------~~~~~~~~~i~~~~  281 (382)
T PRK10091        209 MFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-------AAVTDFIIVLALLM  281 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-------HHHHHHHHHHHHHH
Confidence            3322 2233446667777 6789999999999999999999999999999999998865       22222222111111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      ... ... ..  +...+..++.+++.....++.......+..+++..+.+  ..+...++|.++||.+.|++.|..++|.
T Consensus       282 ~~~-~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~  355 (382)
T PRK10091        282 LFF-FGG-MK--TASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYN  355 (382)
T ss_pred             HHH-HHh-hH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcc
Confidence            111 111 11  12222223333332222220222233343444444444  3467788999999999999999765654

>PRK15075 citrate-proton symporter; Provisional

Probab=99.68  E-value=4.1e-15  Score=135.27  Aligned_cols=140  Identities=15%  Similarity=0.126  Sum_probs=92.6

Q ss_pred             hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 017535           88 PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  166 (370)
Q Consensus        88 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      .+....|.|.|+ +.+|++..+.+++..+..++.+++.+++|+++||++||+.       ...+..+........+....
T Consensus       254 ~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~-------~~~~~~~~~~~~~~~~~~~~  326 (434)
T PRK15075        254 FYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPV-------LIAFTVLAILTAYPALSWLV  326 (434)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            345557899999 5689999999988888889999999999999999998865       22221111111111111111


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHHHHHhh
Q 017535          167 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQHV  236 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~l~~~~  236 (370)
                      ..+. ........++.+++.+...+ ..+.+..|.+|++.|+++.++.+.+... ++.++|.+.|++.|..
T Consensus       327 ~~~~-~~~~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        327 AAPS-FARMLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             cCCc-hHHHHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            1122 21122223333444444444 4567788999999999999997655554 5888999999999987

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.68  E-value=1.9e-15  Score=139.80  Aligned_cols=225  Identities=12%  Similarity=0.085  Sum_probs=142.1

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCc----------------cccCcccchhh------
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSD----------------QVSSKSFRSDV------   59 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~------   59 (370)
                      +++++.+++|||+.|++.++++++..++.++..|++++....+.+..                ...+...+...      
T Consensus       145 ~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (485)
T TIGR00711       145 LGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILIL  224 (485)
T ss_pred             cHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHH
Confidence            35667788999999999988887777766666665332211110000                00000000000      


Q ss_pred             ------------------hhhHHHHhhhccchHHHHHHHH-HhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH
Q 017535           60 ------------------KVLIQEAKSVIKIPSFQIIVAQ-GVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIA  119 (370)
Q Consensus        60 ------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~  119 (370)
                                        ++... -.+++++|.++..... ++.....+....++|.|+ +.+|+++.+++++..+..++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~  303 (485)
T TIGR00711       225 SITGLVAIIAFVVWELTDDNPLV-DLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLA  303 (485)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCcc-CHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence                              00000 1246778875554443 333444455567889999 67899999999999999999


Q ss_pred             HHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhc
Q 017535          120 SSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFA  199 (370)
Q Consensus       120 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  199 (370)
                      .+++.++.|++.||+++|+.       ..++..+............... ...+......++.|++.+...+ .......
T Consensus       304 ~~~~~~~~g~l~~r~~~~~~-------~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~~~~~~-~~~~~~~  374 (485)
T TIGR00711       304 PMLSSPIAGRMGDKIDPRKL-------VTIGLILYAVGFYWRAFTFTPD-TPFLAIALPQFIRGFGMGCFFM-PLTTIAL  374 (485)
T ss_pred             HHHHHHHHHHHHhhcCcHHH-------HHHHHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            99999999999999998864       2333222221111111111122 2233344445666776666554 4456666


Q ss_pred             cccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          200 EIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       200 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..|++++|+++|+.++.+++|+.+|+.+.|.+.+..
T Consensus       375 ~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       375 SGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             hcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999998754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.67  E-value=1.8e-14  Score=129.26  Aligned_cols=202  Identities=11%  Similarity=0.106  Sum_probs=128.0

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+.+|||+.|++.+++++++.+......||++.++  +                ...+..++.+|+|.++......
T Consensus       164 ~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~--~----------------~~~~~~~~~l~~~~~~~~~~~~  225 (394)
T PRK10213        164 GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP--S----------------HQKQNTFRLLQRPGVMAGMIAI  225 (394)
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc--c----------------cchhHHHHHhcCHHHHHHHHHH
Confidence            456677889999999988877765554444445432110  0                0011234677888866554433


Q ss_pred             -hhhhhhHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 -VTGSFPWSALSFA-AMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 -~~~~~~~~~~~~~-~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                       +.....+...++. |.|.+++|+++.+.+.+....+++.+++.++.+++.||.+++ .       ......+.......
T Consensus       226 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~-~-------l~~~~~~~~~~~~~  297 (394)
T PRK10213        226 FMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKL-A-------LAGAPLVLAVSALV  297 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchh-H-------HHHHHHHHHHHHHH
Confidence             3333334445665 555588899999999999999999999999999999984333 1       12221221111111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ... ...  . .+.+.+..++.|++.+...+ ...+.+.+..| +..+...++.....+++..+|+.+.|++.|..
T Consensus       298 l~~-~~~--~-~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~  367 (394)
T PRK10213        298 LTL-WGS--D-KIVATGVAIIWGLTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNI  367 (394)
T ss_pred             HHH-Hhh--h-HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            111 111  1 23344456666777666665 56667777776 44778888888888999999999999999976

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.67  E-value=7.4e-15  Score=132.70  Aligned_cols=206  Identities=11%  Similarity=0.143  Sum_probs=127.8

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHH-HHHHH
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQI-IVAQG   82 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   82 (370)
                      +.+.+.+|||+.|++.+++.++..+..+++.|++..+...+   +           ....++..+.++++.++. .+...
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~  228 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK---E-----------MLHMREVVTSLKNPKLVLSLFVTT  228 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch---h-----------hhHHHHHHHhCcCCchHHHHHHHH
Confidence            44556789999999999888777776666667643211100   0           111122334567776433 22222


Q ss_pred             hhhhhhH-HHHHHHHHHHHHhCCCHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHH
Q 017535           83 VTGSFPW-SALSFAAMWLELTGFSHE----KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL  157 (370)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~~g~s~~----~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  157 (370)
                      +...... ....+++.|..+.+.+..    ..+.+..+..++.+++.++.|++.||+++|+.       ...+..+....
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~-------~~~~~~~~~~~  301 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI-------LITALIFSVLL  301 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-------HHHHHHHHHHH
Confidence            2222222 233567777744333322    24555566678888899999999999998865       23322222211


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          158 AALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       .+.+. ...  . .+.+.+..++.|++.+...+ ...+.+.+..|++.+|+.+++.+.+..+|..+||.+.|.+.+..
T Consensus       302 -~~~~~-~~~--~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~  374 (408)
T PRK09874        302 -LIPMS-FVQ--T-PLQLGILRFLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY  374 (408)
T ss_pred             -HHHHH-Hhc--c-HHHHHHHHHHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc
Confidence             11111 111  1 23344555667777766666 56677778888899999999999999999999999999998876

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.67  E-value=2.3e-14  Score=130.09  Aligned_cols=207  Identities=16%  Similarity=0.263  Sum_probs=148.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhHH
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWS   90 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (370)
                      +|++..++.+++.++..++..+..||.+.....++     ++       .+.++.++.+++||.++.++...++....+.
T Consensus       175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-----~~-------~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~  242 (428)
T PF13347_consen  175 GYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-----KK-------ISLRDSLRSLFRNRPFRILLLAFFLQWLAFA  242 (428)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhheeeeccccccccc-----cc-------cccccchhhhcccchHHHHHHHHHHHHhhhh
Confidence            79999999999999988888888888211111110     00       3345567789999998877776666666655


Q ss_pred             HH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           91 AL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        91 ~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      .. ...+.|. ...|.+ ...+.+.....++.+++.++.++++||+|+|+.       ...+..+.........+ .+. 
T Consensus       243 ~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~-------~~~~~~~~~~~~~~~~~-~~~-  312 (428)
T PF13347_consen  243 LMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKV-------YIIGLLLAALGFLLLFF-LGP-  312 (428)
T ss_pred             hhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceee-------hhhhHHHHHHHHHHHHH-HHh-
Confidence            44 4556666 445655 567777778899999999999999999999987       34443333332222222 221 


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-------CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-------EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                       .+.+.+.+..++.|++.+.... ..+++++|..+       ++..|..+|+.++...++.++++.+.|.+.+.. ||++
T Consensus       313 -~~~~~~~i~~~l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~-Gy~~  389 (428)
T PF13347_consen  313 -GSPWLVLILFILAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV-GYDA  389 (428)
T ss_pred             -hhHHHHHHHHHHhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-CcCC
Confidence             2344566677777887777776 77999999876       355799999999999999999999999999988 8876


Q ss_pred             C
Q 017535          242 I  242 (370)
Q Consensus       242 ~  242 (370)
                      .
T Consensus       390 ~  390 (428)
T PF13347_consen  390 N  390 (428)
T ss_pred             C
Confidence            5

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.67  E-value=1.9e-15  Score=135.72  Aligned_cols=207  Identities=15%  Similarity=0.185  Sum_probs=126.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchH--HHHHHHHHhhh
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS--FQIIVAQGVTG   85 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   85 (370)
                      +.+|||++|++.+++.++... .....+|+++.+..+++.+ .           ..++.++.++++.  ++......+..
T Consensus       165 ~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (394)
T TIGR00883       165 LEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKAQEKHK-K-----------KRGPIRETLTKHRKPFLLGLGLVIAT  231 (394)
T ss_pred             hccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHHHhccc-c-----------ccCCHHHHHHhchHHHHHHHHHHHHH
Confidence            467999999987766554433 3333344221111100000 0           0111223444443  44443333333


Q ss_pred             h-hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 017535           86 S-FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL  163 (370)
Q Consensus        86 ~-~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (370)
                      . ..+....++|.|+ +.+|.+..+.+.+.....++.+++.++.|+++||+++|+.       ......+........+.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~~~~~~  304 (394)
T TIGR00883       232 TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV-------LIIFTVLAALLAVPLLM  304 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-------HHHHHHHHHHHHHHHHH
Confidence            3 3344557899999 7889999999999999999999999999999999998864       22121111111111111


Q ss_pred             hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHH-HHHHHHhhchhhHHHHHHHHhh
Q 017535          164 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD-RSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...... ..+......++.+++.+...+ ...+++.|.+|++.|+++.++. +....+++.++|.+.|++.+..
T Consensus       305 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       305 ALLDSG-SFTLFFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             HHhcCC-chHHHHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence            111111 223344445566666666666 6788999999999999999985 4555678889999999999987

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11043 putative transporter; Provisional

Probab=99.67  E-value=8e-15  Score=132.15  Aligned_cols=207  Identities=14%  Similarity=0.030  Sum_probs=129.8

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH-
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ-   81 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (370)
                      ++++.+.+|||+.|++.+++.++..++.++..+++++++  +               ++...++++++|+|.++..... 
T Consensus       150 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~~~~~~~~~~  212 (401)
T PRK11043        150 GAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKARK--Q---------------SQDALTFKQLLKSKTYLGNVLIF  212 (401)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCccc--c---------------chHHHHHHHHHcChhHHHHHHHH
Confidence            455667889999999998888776665554433322111  0               1112345677888886543332 


Q ss_pred             HhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      .+.....+...++.|.+++++|+++.+.++......++.++|.++.+++.||+++|+..    +...+...++.... ..
T Consensus       213 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~----~~~~~~~~~~~~~~-~~  287 (401)
T PRK11043        213 AACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL----PWLLVLFAVSVIAI-WL  287 (401)
T ss_pred             HHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH----HHHHHHHHHHHHHH-HH
Confidence            23333334455778888877899999999988878888899999999999999877541    11111111111111 11


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .. ....+. .+...+.....+++.+...+ ...+...+..| +.+|++.|+.+.....++.+++.+.|.+.+.
T Consensus       288 ~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        288 AS-LLSHPS-LVPLLIPFCVMAAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HH-HhccCc-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            11 111122 22333444555666666666 55555556555 5699999999999998999999999888764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.67  E-value=2.1e-14  Score=129.32  Aligned_cols=207  Identities=14%  Similarity=0.167  Sum_probs=117.1

Q ss_pred             cccc-cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhh
Q 017535            6 FMGI-PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVT   84 (370)
Q Consensus         6 ~~~~-~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (370)
                      +.+. +|||..|++.+++.++..+. .+..|||+..+..+  +  .    ..   ++..+++++++|||.++.++...++
T Consensus       153 l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~--~--~----~~---~~~~~~~~~l~~~~~~~~~l~~~~l  220 (402)
T PRK11902        153 LADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP--R--S----LG---EAVVGPLRDFFSRRGAWALLLLIVL  220 (402)
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc--c--h----hH---HHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            3443 59999999988877665443 34556654321111  0  0    00   2344567788999987655444333


Q ss_pred             hhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHH-HHH
Q 017535           85 GSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFV-IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL-AAL  160 (370)
Q Consensus        85 ~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~-~~~  160 (370)
                      .... .....+.+.++ +.+|+++.+.+++....+ ++.+++.+++|++.||+++|+.       ..++..+.... ...
T Consensus       221 ~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~-------l~~~~~~~~l~~l~~  293 (402)
T PRK11902        221 YKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS-------LMLFGVLQAVSNLGY  293 (402)
T ss_pred             HHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHH
Confidence            2222 22223445556 779999999999886654 4688999999999999998864       22222221111 111


Q ss_pred             HHHhCCCCCChhHHHHHHH----HHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVL----VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ........+  .+.+....    +..|+..+.... ....++.+..|    ++..++.+....++..+++.+.|.+.|..
T Consensus       294 ~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~~  366 (402)
T PRK11902        294 WVLAVTPKH--LWTMALAIGIENLCGGMGTAAFVA-LLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEAY  366 (402)
T ss_pred             HHHHhcCCc--HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111121111  22222222    233344433333 33444455444    44566666666777776777899999987


Q ss_pred             cCC
Q 017535          237 YGF  239 (370)
Q Consensus       237 ~g~  239 (370)
                       ||
T Consensus       367 -G~  368 (402)
T PRK11902        367 -GW  368 (402)
T ss_pred             -Ch
Confidence             53

>PRK09848 glucuronide transporter; Provisional

Probab=99.67  E-value=2.1e-14  Score=131.15  Aligned_cols=168  Identities=8%  Similarity=-0.000  Sum_probs=110.7

Q ss_pred             hHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           62 LIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      ..+.++.++|||.++...+..++....+... .+.|.|+ ..+|.++...++......++.+++.++.+++.||+++|+.
T Consensus       217 ~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~  296 (448)
T PRK09848        217 LKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT  296 (448)
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH
Confidence            3445678999999877666555555443333 4566666 5678776655555555567788899999999999998865


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC-------CchhHHHH
Q 017535          140 NSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE-------KSRTSVYA  212 (370)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~  212 (370)
                             ..++..+..... +.+...+.  ...+.+.+..++.+++.+...+ ...++..+..|.       +..|..+|
T Consensus       297 -------~~~g~~~~~i~~-~~~~~~~~--~~~~~~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~  365 (448)
T PRK09848        297 -------FLIGALLGTCGY-LLFFWVSV--WSLPVALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYS  365 (448)
T ss_pred             -------HHHHHHHHHHHH-HHHHHcCc--hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHH
Confidence                   333333322221 22221221  1233344445556666665555 667777777764       34699999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          213 MDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                      +.++...+|.++++.+.|.+.+.. ||+.
T Consensus       366 ~~~~~~klg~aig~~i~g~~l~~~-G~~~  393 (448)
T PRK09848        366 LFSFTRKCGQAIGGSIPAFILGLS-GYIA  393 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence            999999999999999999999987 7763

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.65  E-value=5.1e-15  Score=137.27  Aligned_cols=135  Identities=16%  Similarity=0.212  Sum_probs=95.1

Q ss_pred             HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017535           91 ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  169 (370)
Q Consensus        91 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (370)
                      ...++|.|+ +.+|++..+.+.+.+...++.+++.++.|+++||+++|+.       ..++..+..... +.+....  .
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~-~~~~~~~--~  363 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKA-------YVCSLLISQLLI-IPVFAIG--G  363 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHH-HHHhhcc--c
Confidence            346789999 6899999999999999999999999999999999998865       222222222111 1111111  1


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          170 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...+.+....++.++......+ ...+++.+.+|++.+|+++|+.+....+|+.++|.+.|.+.|..
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~  429 (496)
T PRK03893        364 ANVWVLGLLLFFQQMLGQGISG-LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL  429 (496)
T ss_pred             cHHHHHHHHHHHHHHHhcccch-hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC
Confidence            2222233333333332222233 55677889999999999999999999999999999999999986

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.65  E-value=3e-14  Score=128.51  Aligned_cols=212  Identities=14%  Similarity=0.058  Sum_probs=124.6

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      |+.+.+++|||+.|++.++++++..+..++..||++..+..   +  ..       .+..+++++.++|||.++...+..
T Consensus       160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~---~--~~-------~~~~~~~~~~ll~~~~~~~~~l~~  227 (413)
T PRK15403        160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAV---P--FS-------AKSVLRDFRNVFRNRLFLTGAATL  227 (413)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCC---C--CC-------hHHHHHHHHHHHcCHHHHHHHHHH
Confidence            45566678999999999988877766555556664221100   0  00       134456778899999977665554


Q ss_pred             hhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      .+.... +....+.|.++ +.+|+++.+.++.......+.+++..+.+++.++..+++.    ..........+......
T Consensus       228 ~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~~~~~ig~~l~~~  303 (413)
T PRK15403        228 SLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF----IWRAVPIQLVGLALLIV  303 (413)
T ss_pred             HHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH----HHHHHHHHHHHHHHHHH
Confidence            444433 44446779888 6679999999998877778888877777766543332222    00000011111111111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .....   ...++...+..++.+++.+...| ........ -.+..+|++.|+.++....+..+++...|++.+.
T Consensus       304 ~~~~~---~~~~~~~~~~~~l~~~G~~~~~p-~~~~~al~-~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        304 GNLLW---PHVWLWSVLGTSLYAFGIGLIFP-TLFRFTLF-SNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             HHHHc---cccHHHHHHHHHHHHHHHHHHhH-HHHHHHhc-cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11111   11122233444555565555555 33322211 1223479999999999999999999999887765

>TIGR00895 2A0115 benzoate transport

Probab=99.65  E-value=2.4e-15  Score=135.34  Aligned_cols=217  Identities=16%  Similarity=0.132  Sum_probs=131.0

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC-CCC----------------c-c-ccCcccchhhhhhH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGT-ANS----------------D-Q-VSSKSFRSDVKVLI   63 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~----------------~-~-~~~~~~~~~~~~~~   63 (370)
                      ++.+.+..|||+.|++.+++.++..++.+++.|++++....+ .++                . . ...+...+..+...
T Consensus       161 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (398)
T TIGR00895       161 AGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVF  240 (398)
T ss_pred             HHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHH
Confidence            345667789999999988777776666666667643210000 000                0 0 00000000001111


Q ss_pred             HHHhhhccchHHHHHHH-HHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCch
Q 017535           64 QEAKSVIKIPSFQIIVA-QGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSG  142 (370)
Q Consensus        64 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~  142 (370)
                      +.+++..+.+..+.+.. .++.....+....|.|.+.+++|+++.+.+.+.....++.+++.++.|+++||+++|+.   
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  317 (398)
T TIGR00895       241 KALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT---  317 (398)
T ss_pred             HHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH---
Confidence            11111111222222222 22222333444467885558899999999999999999999999999999999988722   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh
Q 017535          143 RIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS  222 (370)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  222 (370)
                           .....+........... .  .. .....+..++.|++.+...+ ...+++.+.+|++.|+++.|+.+.+..+++
T Consensus       318 -----~~~~~~~~~~~~~~~~~-~--~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  387 (398)
T TIGR00895       318 -----ALLLLLGAVFAVLVGST-L--FS-PTLLLLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGA  387 (398)
T ss_pred             -----HHHHHHHHHHHHHHHHH-h--hC-HHHHHHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Confidence                 22212221111111111 1  11 22344555667777666666 778899999999999999999999999999


Q ss_pred             chhhHHHHHH
Q 017535          223 SFAPPVVGIL  232 (370)
Q Consensus       223 ~~~~~~~g~l  232 (370)
                      .++|.+.|++
T Consensus       388 ~~g~~~~G~l  397 (398)
T TIGR00895       388 IIGPILAGYL  397 (398)
T ss_pred             HHHHHhHHhc
Confidence            9999999875

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.65  E-value=3.8e-14  Score=127.37  Aligned_cols=207  Identities=9%  Similarity=-0.028  Sum_probs=124.7

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++++. .+|||+.|++.+++.++..++..++.|+++.++  .   .           .+..+++++++++|.++......
T Consensus       155 ~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~--~---~-----------~~~~~~~~~~~~~~~~~~~~~~~  217 (400)
T PRK11646        155 GSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLST--V---R-----------TPVREGMTRVLRDKRFVTYVLTL  217 (400)
T ss_pred             HHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccc--c---c-----------hhhHHHHHHHHcCchHHHHHHHH
Confidence            34455 679999999988877776655555555422110  0   0           11223456778888865543332


Q ss_pred             hhhh-hhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGS-FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~-~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      .... .......++|.|+++.+.++.+.+.+.+...++..++....+++.|| ++.++.       ...+..+.. ....
T Consensus       218 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~-------~~~~~~~~~-~~~~  289 (400)
T PRK11646        218 TGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR-------LMAGLLIMS-LSMF  289 (400)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHHH-HHHH
Confidence            2222 22233467888886655577888888877776666555555555554 433321       122222221 1111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      .+. ..+  . .+.+.+..+..+.+.+...| ...+++.+..|++++|++.|+.++..++|..+||.+.|++.|..+++
T Consensus       290 ~l~-~~~--~-~~~~~~~~~l~~~g~~~~~p-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~  363 (400)
T PRK11646        290 PIG-MVS--N-LQQLFTLICLFYIGSIIAEP-ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKAL  363 (400)
T ss_pred             HHH-Hhh--h-HHHHHHHHHHHHHHHHHHHc-cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhc
Confidence            111 111  1 22233333445555555566 66788889999999999999999999999999999999999987443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.9e-14  Score=120.50  Aligned_cols=201  Identities=14%  Similarity=0.140  Sum_probs=134.8

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH-hhhhhh
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG-VTGSFP   88 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   88 (370)
                      .|||....+-++++++..+.++.-...++ ....+  .              ....-..++|+|.-|.+.+++ +.+...
T Consensus       162 ~gW~~aL~~WAl~allAl~~WlPq~~r~~-~~~~~--~--------------~~~~~~~vw~~~~aW~vtLfmGlqS~~~  224 (395)
T COG2807         162 GGWRGALGFWALLALLALLIWLPQALREQ-AASIA--T--------------KLVSVRKVWRSPLAWQVTLFMGLQSLLY  224 (395)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhhccccc-ccccc--c--------------ccccccccccCchhHHHHHHHHhhHHHH
Confidence            37999999999988876665543321110 11100  0              000112589999855555544 555556


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           89 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        89 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      |..+.|+|.++.+.|+|+.++|.+.+...+..+..++....+.+|...++.       ..+...++.......+...+..
T Consensus       225 Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~-------~~~~~~~~~l~G~~G~~~~P~~  297 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP-------LVVLALLLMLVGLVGLLLAPGQ  297 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHHHHHHHhhhh
Confidence            778899999999999999999999999999999999999999999655554       2222222222333333333333


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccc-cCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEI-VPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      ..   ...  .+++|++.|..+| ...+.+... .+++..+.-+|+.+.++++-.++||.+.|++.|.+|+|.
T Consensus       298 ~~---~lw--~~llG~G~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~  364 (395)
T COG2807         298 LP---ILW--ALLLGLGQGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWS  364 (395)
T ss_pred             HH---HHH--HHHHhCccchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChH
Confidence            22   122  3556666666666 445554443 456778888999999999999999999999999997754

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.64  E-value=2.9e-14  Score=127.42  Aligned_cols=203  Identities=12%  Similarity=0.083  Sum_probs=116.9

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+..|||+.|++.+++.++..++..++.||+++++..+    +.+       .+...+++++++++|.++......
T Consensus       135 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  203 (377)
T PRK11102        135 GGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQ----PFH-------LRTTIRNFASLFRHKRVLGYMLAS  203 (377)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccC----CCC-------hHHHHHHHHHHHcChHHHHHHHHH
Confidence            345566789999999998888777766666666642211100    000       022344566788888855544433


Q ss_pred             hhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH-
Q 017535           83 VTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA-  159 (370)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-  159 (370)
                      .+... .+....+.|.++ +.+|+++.+.+.+.....++.+++.++.|++.||+++|+.       ..++..+...... 
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~  276 (377)
T PRK11102        204 GFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNM-------LRFGLWIQFIMGIW  276 (377)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-------HHHHHHHHHHHHHH
Confidence            33322 344446677777 7789999999999999999999999999999999998865       2222221111111 


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHH-HhhchhhH
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES-ILSSFAPP  227 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~  227 (370)
                      ........ .. .+...+.....+.+.+...+ .....+.+..| +.+|++.++.+.... ++..+++.
T Consensus       277 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~  341 (377)
T PRK11102        277 LVVSALLD-LG-FWALVVGVAAFVGCVSMISS-NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGAL  341 (377)
T ss_pred             HHHHHHHh-hh-HHHHHHHHHHHHHHHHHhhH-HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHH
Confidence            11111111 11 22222222222222333233 33455566555 679999998877654 33344443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.64  E-value=4.1e-14  Score=127.23  Aligned_cols=214  Identities=8%  Similarity=0.033  Sum_probs=129.2

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHh
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV   83 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
                      +.+. ..+||++|++.++++++..++.+...+++++++...+..+.+.+       +...++.++++|||.++..+...+
T Consensus       154 g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~l~~~  225 (396)
T TIGR00882       154 GILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANAS-------AFSLKLALELFRQRKFWMFVLYVV  225 (396)
T ss_pred             hhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccC-------CCCHHHHHHHHcCCcHHHHHHHHH
Confidence            3443 35999999999888887776665554543221111000000000       112335667889998665544444


Q ss_pred             hhhhhHHHH-HHHHHHHH-Hh---CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH
Q 017535           84 TGSFPWSAL-SFAAMWLE-LT---GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  158 (370)
Q Consensus        84 ~~~~~~~~~-~~~~~~~~-~~---g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  158 (370)
                      .....+... .+.+.|++ .+   +.+....+.+.+...+...++.+..|++.||+++|+.       ..++..+... .
T Consensus       226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-------l~~~~~l~~l-~  297 (396)
T TIGR00882       226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-------LLIAGTIMSV-R  297 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-------HHHHHHHHHH-H
Confidence            333333333 56778873 33   5566778888888888889999999999999999976       2333222221 1


Q ss_pred             HHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH-HHHHHHHhhchhhHHHHHHHHhhc
Q 017535          159 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHVY  237 (370)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~~~~~  237 (370)
                      ...+. ...+   .+.+.+..++.|++...... ....+..+..+++.++++.++ .++...+|+.+++.+.|++.|.. 
T Consensus       298 ~~~~~-~~~~---~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-  371 (396)
T TIGR00882       298 IIGSS-FATT---ALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-  371 (396)
T ss_pred             HHHHH-hcCC---hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-
Confidence            11111 2211   22234445555555443332 234455666778888887766 67889999999999999999987 


Q ss_pred             CC
Q 017535          238 GF  239 (370)
Q Consensus       238 g~  239 (370)
                      ||
T Consensus       372 G~  373 (396)
T TIGR00882       372 GF  373 (396)
T ss_pred             cc
Confidence            53

>TIGR00901 2A0125 AmpG-related permease

Probab=99.64  E-value=1.3e-14  Score=128.66  Aligned_cols=190  Identities=13%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchH---HHHHHHH-Hhhhh
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPS---FQIIVAQ-GVTGS   86 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~   86 (370)
                      +||.+|++.+++.++..+..++..|||.+.+..+    +..       .++..+.++.++++|.   ++..... ++...
T Consensus       155 ~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (356)
T TIGR00901       155 LWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP----KPL-------TQAVLKPIREFFQRKNMIQALLLLLLIVLYKL  223 (356)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc----hhH-------HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            3999999998877775555555556653321110    000       0223345566777764   4444333 33333


Q ss_pred             hhHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           87 FPWSALSFAAMWLELTGFSHEKTAFLMALFV-IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        87 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~-~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ..+...++.|.|++++|+++.+.+.+....+ ++.+++.+++|++.||+++|+.       ..++.++.........+..
T Consensus       224 ~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-------l~~~~~~~~~~~~~~~~~~  296 (356)
T TIGR00901       224 GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-------LLLFGIVQALTNAGFVWLA  296 (356)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            3455557899999669999999998887765 5788999999999999998865       2222222221111111111


Q ss_pred             CCC------CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHH
Q 017535          166 PDD------PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  219 (370)
Q Consensus       166 ~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  219 (370)
                      ...      ....+.+....++.+++.+...+ ...+++.+.+|++++|+..|+.+...+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       297 SNGHHDGITFPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             hcCcccccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            111      01233445555566776666666 779999999999999999999887764

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.64  E-value=2.4e-14  Score=132.13  Aligned_cols=132  Identities=13%  Similarity=0.031  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      .+.|.+++..|++.....+.....++..+++.+++++++||++||+.       ...+.++..+....+...........
T Consensus       292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-------~i~~~~~~~v~~~~l~~~~~~~~~~~  364 (479)
T PRK10077        292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-------QIIGALGMAIGMFSLGTAFYTQAPGI  364 (479)
T ss_pred             HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-------HHHhHHHHHHHHHHHHHHHhcCcccH
Confidence            45677777889988777777777888999999999999999998865       23332222222111111111111111


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          173 VMHGLVLVVTGLFISW-NAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      + ....+++.+.+.+. ..| ..++++.|.+|++.|+++.|+.+...+++..+++.+.+.+.
T Consensus       365 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        365 V-ALLSMLFYVAAFAMSWGP-VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             H-HHHHHHHHHHHHhccccc-hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            1 22222333333332 234 66889999999999999999999999999999987776555

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.63  E-value=1.6e-14  Score=130.27  Aligned_cols=140  Identities=19%  Similarity=0.236  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 017535           89 WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  167 (370)
Q Consensus        89 ~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      +....++|.|+ +++|++..+.+.+.+...++.+++.++.|++.||+++|+.       ..++..+..... +...... 
T Consensus       255 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~-~~~~~~~-  325 (405)
T TIGR00891       255 HPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKA-------YVCSLLAGQLLI-IPVFAIG-  325 (405)
T ss_pred             hhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhh-------hHHHHHHHHHHH-HHHHHhC-
Confidence            34446788888 7789999999999999999999999999999999998875       232222221111 1111111 


Q ss_pred             CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          168 DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       168 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                       .. .+.+.+..++.++..+...+ ...+++.+.+|++.+|++.|+.+.+.++++.++|.+.|++.|..+.|.
T Consensus       326 -~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~  395 (405)
T TIGR00891       326 -AN-VAVLGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG  395 (405)
T ss_pred             -Cc-hHHHHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence             11 22333333445554444445 567788999999999999999999999999999999999999883354

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.63  E-value=2.2e-15  Score=133.31  Aligned_cols=208  Identities=26%  Similarity=0.367  Sum_probs=133.2

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHH-HHhhhccchHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQ-EAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (370)
                      ++.+.+.+|||+.|++.+++.++..++..++.++++..+..+.+.++..+      .+..+. .++.++++|.++..+..
T Consensus       141 ~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  141 GGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESK------KPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             HHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             hhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccccc------cccccccccccccccchhhhhhhh
Confidence            45666788999999999999888877554555543322222111111000      011111 24556666665533333


Q ss_pred             Hhhhh-hhHHHHHHHHHHH-HHhCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH
Q 017535           82 GVTGS-FPWSALSFAAMWL-ELTGFS-HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  158 (370)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~-~~~g~s-~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  158 (370)
                      .+... .......+.|.|+ +.+|++ ..+.+.+..+..+..+++.++.|++.||+++++.       ..+...... ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~-~~  286 (352)
T PF07690_consen  215 FFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR-------LLIAILLLI-LG  286 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-------HHHHHHHHH-HH
T ss_pred             hhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-------HHHHHHHHH-HH
Confidence            33333 3344557899997 899999 8999999999999999999999999999887644       122212111 11


Q ss_pred             HHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          159 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      ...+..... ........+..++.|++.+...+ ...+++.+.+|++++|++.|+.++..++++.++|
T Consensus       287 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  287 ALGLLLLPF-SSSPVWLIIALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHCCSHH-HCHHHHHHHHHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            222211111 11233344466667887777777 7899999999999999999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.63  E-value=1.4e-14  Score=133.50  Aligned_cols=140  Identities=11%  Similarity=0.037  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHH-HhCCCCC-
Q 017535           92 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL-LVLPDDP-  169 (370)
Q Consensus        92 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-  169 (370)
                      ..+.|.+++..|++..+.+....+..++.+++.+++|+++||+++|+.       ..++..+......... ....... 
T Consensus       304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  376 (481)
T TIGR00879       304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL-------LLIGAAGMAICLFVLGILGASFVTG  376 (481)
T ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHHHhhcccCC
Confidence            356777778889999888888888899999999999999999998865       2222222221111111 1111111 


Q ss_pred             -----ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          170 -----STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       170 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                           .........++..+++.+ ..+ ....++.+.+|++.|+++.|+.++..+++++++|.+.+.+.+.. ++..
T Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~  450 (481)
T TIGR00879       377 SSKSSGNVAIVFILLFIAFFAMG-WGP-VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGG  450 (481)
T ss_pred             cccchhHHHHHHHHHHHHHHHcc-ccC-eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccc
Confidence                 111222222222222222 234 56777789999999999999999999999999999999999876 5443

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.63  E-value=3.9e-14  Score=126.70  Aligned_cols=208  Identities=14%  Similarity=0.044  Sum_probs=131.3

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      +++++.+++|||..|++.++..++.. +..++.|+++++.  ++++   ..       ++..+++++++|+|.++.....
T Consensus       147 lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~---~~-------~~~~~~~~~i~~~~~~~~~~~~  213 (382)
T PRK11128        147 LTGKLVSWFGEQAILWILTAGVASML-LGQLLRPTIMPQG--ESRQ---QE-------SAGWPAWKALLKEPTVWRFLLC  213 (382)
T ss_pred             HHHHHHHHcChhHHHHHHHHHHHHHH-HHHHccCCCCCcc--cccc---cc-------ccccchHHHHHcChhHHHHHHH
Confidence            35667788999999998776544433 3333334432111  1000   00       1112345678999997765554


Q ss_pred             Hhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      .++.... ....++.|.|+++.|++..+.+.+.+...++.++..++.|++.||+++|+.       +.++...... ...
T Consensus       214 ~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------l~~~~~~~~~-~~~  285 (382)
T PRK11128        214 VSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-------LLLSAICGVV-RWG  285 (382)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-------HHHHHHHHHH-HHH
Confidence            4433333 344477888887799999999999888888888999999999999988865       2333222221 111


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHH-HHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF-ESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~g~l~~~~  236 (370)
                       .....  + ..+.+.+..++.|++.+...+ ....+..+. +++++++..++.+.. ..+|..+||.+.|.+.|..
T Consensus       286 -~~~~~--~-~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        286 -LMGST--T-ALPWLIVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             -HHHhh--h-hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence             11122  2 233445566667777666555 556666665 555578888888744 4566689999999999987

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.63  E-value=9.6e-14  Score=124.84  Aligned_cols=207  Identities=14%  Similarity=0.087  Sum_probs=129.3

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++.+.+..|||+.|++.+++.++..++..++.||++..+..+               .+..+.++.++++|.++..+...
T Consensus       152 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~  216 (394)
T PRK11652        152 GGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR---------------TRVLASYRTLLSNRRFNCYLLML  216 (394)
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch---------------hHHHHHHHHHHcChHHHHHHHHH
Confidence            345566789999999988877776666556666632211100               12345566788888866544433


Q ss_pred             hhhhhhHH-HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFPWS-ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~~~~~-~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      +....... +..+.+.++ +.+|+++.+.+++.....++.+++.++.+++.||.+++..      .......+....  .
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~------~~~~~~~~~~~~--~  288 (394)
T PRK11652        217 IGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW------QSVICCLLAGLL--M  288 (394)
T ss_pred             HHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH--H
Confidence            33332222 234567777 5689999999998888888888888999999998873321      111111111111  1


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .......... .+.+....++.+++.+...| ...+...+..| +.+|++.++.+....+|+.+++.+.+.+...
T Consensus       289 ~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        289 WIPGWFGVMN-VWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHhcccc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            1111111111 23344455666666676666 66777778776 5689999999999999999999888876543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.62  E-value=2.9e-14  Score=144.86  Aligned_cols=218  Identities=11%  Similarity=-0.011  Sum_probs=140.8

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      +|+++....||++.|++.+++.++ +++..+.+++++....... .    ...   ..+.....++.+.++|.++.+.+.
T Consensus       163 l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~  233 (1140)
T PRK06814        163 IGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNAAPDLK-I----DRN---IIRSTITLLKYAKADKRIWLAILG  233 (1140)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCCCCCCe-e----ccc---hHHHHHHHHHHHhcCchHHHHHHH
Confidence            456777889999999544444444 3444444454322111100 0    000   012344567788889987776665


Q ss_pred             Hhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      +...... ..+.+++|.|+ +.+|.++...+++.+...++.++|.++.|+++++..+++..      ....++.++....
T Consensus       234 ~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~------~~~~~~~~~~~~~  307 (1140)
T PRK06814        234 ISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYV------PIGALLMGLFGLD  307 (1140)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeee------hHHHHHHHHHHHH
Confidence            5444443 45558899999 67899999999999999999999999999999876655431      1111111111111


Q ss_pred             HHHH---------------hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhch
Q 017535          160 LLLL---------------VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF  224 (370)
Q Consensus       160 ~~~~---------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  224 (370)
                      +.+.               .+.. ....+.+.+..+++|++.+...+ ...+++++.+|++.+|+++|+.+++..++..+
T Consensus       308 l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~i  385 (1140)
T PRK06814        308 LAFASSSVPAEPAQLKSILVFLS-KRHGWRILIDLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVA  385 (1140)
T ss_pred             HHhcccccccccccccchhhhhc-ccccHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHH
Confidence            1110               0000 01233455566677777777776 67899999999999999999999999999999


Q ss_pred             hhHHHHHHHHhh
Q 017535          225 APPVVGILAQHV  236 (370)
Q Consensus       225 ~~~~~g~l~~~~  236 (370)
                      ++.+.|.+.+..
T Consensus       386 g~~~~g~l~~~~  397 (1140)
T PRK06814        386 GTIILALLQALG  397 (1140)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.62  E-value=4.1e-14  Score=129.46  Aligned_cols=211  Identities=20%  Similarity=0.210  Sum_probs=139.7

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      +||.+...+|-.++|++.++..++...+. ...+.+...+...       ++..   .+.....++.+.++|.+...+..
T Consensus       158 lgG~Lva~~G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~~-------~e~~---~~~l~~G~ryv~~~~~l~~~l~~  226 (524)
T PF05977_consen  158 LGGILVAFFGAAAAFLINALSFLISILAL-LRWKPPPPPSSLP-------RERF---FSALREGLRYVRSSPPLRSVLLR  226 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccccccccccc-------hhhh---hhhHHHHHHHHhcchHHHHHHHH
Confidence            35666677888899988877655543333 3333321111100       0011   14455667777778875544433


Q ss_pred             -HhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           82 -GVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                       ++++.........+|.+. +.+|.++...|++.+..++++++|.++.+++.+|+++++.       ...+.+... .. 
T Consensus       227 ~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-------v~~~~~~~a-~~-  297 (524)
T PF05977_consen  227 SFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-------VLLASLLFA-LA-  297 (524)
T ss_pred             HHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-------hHHHHHHHH-HH-
Confidence             333333333446678888 7899999999999999999999999999988887766543       222222221 11 


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...+.+   ..+.+...+.+++.|++...... ...+.++..+|++.+|++++++.++...+..+|..+.|.+.+..
T Consensus       298 ~~~lal---~~~~~~~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~  370 (524)
T PF05977_consen  298 LLLLAL---SPSFWLALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF  370 (524)
T ss_pred             HHHHhc---chHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            111111   12244556667777877766665 66788899999999999999999999999999999999999987

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR01272 gluP glucose/galactose transporter

Probab=99.62  E-value=8.8e-14  Score=120.09  Aligned_cols=199  Identities=15%  Similarity=0.129  Sum_probs=126.1

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHH-HHhhhhhh
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA-QGVTGSFP   88 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   88 (370)
                      ..||++|++.+++.+++.+++.+ .+-|+.++.+.++.  ..+ +     ..   +.++++++|.++...+ .+++...-
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~-~~~p~~~~~~~~~~--~~~-~-----~~---~~~~~~~~~~~~l~~~~~f~yvg~e  156 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAF-LPLPELQEADVARV--SSG-D-----TT---QKTSAFQFTHLVLGALGIFVYVGAE  156 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCccccccc--ccc-c-----cc---chhhHHhhHHHHHHHHHHHHHHHHH
Confidence            57999999887776665554433 33333221111100  000 0     00   1123566777555443 33433344


Q ss_pred             HHHHHHHHHHHH-H--hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           89 WSALSFAAMWLE-L--TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        89 ~~~~~~~~~~~~-~--~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      .+...|++.|++ .  +|+++.+.+...+.+..+.++|+++++++.||+++|+.       ..++..++.... +.+...
T Consensus       157 ~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-------l~~~~~l~~~~~-~l~~~~  228 (310)
T TIGR01272       157 VSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-------LAFNAFLAVLLS-IGAALT  228 (310)
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-------HHHHHHHHHHHH-HHHHHc
Confidence            566689999994 3  59999999999999999999999999999999998765       222222222222 222111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       +. . .  .....++.|++.+..+| ...+...+..|++ .+++.++. .+..+|+++.|.+.|.+.|..
T Consensus       229 -~~-~-~--~~~~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~  291 (310)
T TIGR01272       229 -HG-Y-V--AMWFVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL  291 (310)
T ss_pred             -CC-H-H--HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence             11 1 1  22344567788888888 7677777767654 67777775 567899999999999999987

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.61  E-value=3.5e-15  Score=134.47  Aligned_cols=126  Identities=22%  Similarity=0.323  Sum_probs=93.6

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCc-------c-ccCcccchhhhhhHHHHhhhccchHHHHH
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSD-------Q-VSSKSFRSDVKVLIQEAKSVIKIPSFQII   78 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (370)
                      ...||||.|++.|+++++.++++++++|+ |.+....+++++       + .......+  +..+..+++.+++|.+|.+
T Consensus       201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~dp~vw~~  278 (495)
T KOG2533|consen  201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIEN--KFKWKGFKEALKDPGVWPF  278 (495)
T ss_pred             CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCccc--ccCHHHHHHHHhchhHHHH
Confidence            45799999999999999999999999888 553322222210       0 01111111  1456778899999997766


Q ss_pred             HHHHhhhh-hhHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 017535           79 VAQGVTGS-FPWSALSFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS  135 (370)
Q Consensus        79 ~~~~~~~~-~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~  135 (370)
                      .+..++.. ..+++.+|+|.|++. .|++..+++.+..++.++++++.+++|+++||+.
T Consensus       279 ~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~  337 (495)
T KOG2533|consen  279 SLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK  337 (495)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh
Confidence            55554444 457788999999955 6799999999999999999999999999999953

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.61  E-value=7e-14  Score=125.64  Aligned_cols=201  Identities=15%  Similarity=0.119  Sum_probs=114.0

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHh
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGV   83 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
                      +.+.+..|||+.|++.++++++..++.++..||++.++..   ++           ....+..++.++++.++.......
T Consensus       148 ~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  213 (392)
T PRK10473        148 HLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAP---AA-----------SSKPRENSESLLNRFFLSRLVITT  213 (392)
T ss_pred             HHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccC---Cc-----------cchHHHHHHHHhCHHHHHHHHHHH
Confidence            3445678999999999988888777776666764322110   00           111223346677887554333322


Q ss_pred             hh-hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           84 TG-SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        84 ~~-~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      .. ........+.|.++ +.+|+++.+.+.+.+...++.+++.++.+++.||+++|+.       ..++..+........
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-------~~~~~~~~~~~~~~~  286 (392)
T PRK10473        214 LSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-------MLTSQVLFLAAGITL  286 (392)
T ss_pred             HHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-------HHHHHHHHHHHHHHH
Confidence            22 22233345667777 7789999999999999999999999999999999998865       233322222211111


Q ss_pred             HHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          162 LLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .. ..  ......+...++..|++.+.  +   .....+..|.++++   +..+....++..+++.+.+++.+..
T Consensus       287 ~~-~~--~~~~~~~~~~l~~~g~~~~~--~---~~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~  350 (392)
T PRK10473        287 AL-SP--SHAVSLFGITLICAGFSVGF--G---VAMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL  350 (392)
T ss_pred             HH-HH--HHHHHHHHHHHHHHHHHHHh--H---HHHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11 11  11122222333334443332  2   22223334433332   3333444566677777777888776

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.60  E-value=1.8e-13  Score=129.66  Aligned_cols=110  Identities=12%  Similarity=0.020  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCC
Q 017535          113 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA  192 (370)
Q Consensus       113 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (370)
                      ..+..++.++|.+++|+++||+|||+.       ++++.++..+..++..  +.  +. ...+.+..++.+++.+...+ 
T Consensus       601 ~~l~~l~~i~G~il~g~L~Dr~GRr~~-------l~~~~~lsai~~ll~~--~~--~s-~~~ll~~~~l~g~~~~~~~~-  667 (742)
T TIGR01299       601 NFLGTLAVLPGNIVSALLMDKIGRLRM-------LAGSMVLSCISCFFLS--FG--NS-ESAMIALLCLFGGLSIAAWN-  667 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHH-------HHHHHHHHHHHHHHHH--HH--cc-HHHHHHHHHHHHHHHHHHHH-
Confidence            445578889999999999999999976       3333333322222211  11  11 11233333455555544455 


Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ...+++.|.+|.+.|++++|+.+....+|++++|.++|.+.+.
T Consensus       668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~  710 (742)
T TIGR01299       668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI  710 (742)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6688899999999999999999999999999999999988765

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00896 CynX cyanate transporter

Probab=99.60  E-value=5.6e-14  Score=124.50  Aligned_cols=161  Identities=16%  Similarity=0.098  Sum_probs=106.6

Q ss_pred             hhhccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535           67 KSVIKIPSFQIIVAQGVTG-SFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII  145 (370)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  145 (370)
                      ++++|+|.++.......+. ...+...+|+|.|+++.|++..+.+.+.+...++.++++++.|++.||+++|+..     
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~-----  265 (355)
T TIGR00896       191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGI-----  265 (355)
T ss_pred             chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHH-----
Confidence            3567888866544443333 3345556899999977899999999999999999999999999999999655430     


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhhch
Q 017535          146 LAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSF  224 (370)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~  224 (370)
                       ..++..+..... +.+...+. .. .. .  ..++.|++.+...+ ...+.+.+.. +++.++...++.+.+.++++++
T Consensus       266 -~~~~~~~~~~~~-~~~~~~~~-~~-~~-~--~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  337 (355)
T TIGR00896       266 -VAVLAVLQLVGL-CGLLFAPM-HG-LW-A--WALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAAL  337 (355)
T ss_pred             -HHHHHHHHHHHH-HHHHHhhh-hH-HH-H--HHHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence             122222222111 11111111 11 11 1  23455666666565 4445554434 4566789999999999999999


Q ss_pred             hhHHHHHHHHhhcCCC
Q 017535          225 APPVVGILAQHVYGFK  240 (370)
Q Consensus       225 ~~~~~g~l~~~~~g~~  240 (370)
                      +|.+.|++.|+.++|.
T Consensus       338 gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       338 GPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHHHHHHHhcccC
Confidence            9999999999985554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.60  E-value=1.7e-13  Score=123.49  Aligned_cols=131  Identities=24%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           91 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        91 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      ...++|.|+.+.|++  ..+.......++.+++.++.|++.||+++|+.       ...+..+.... ...+. ..  +.
T Consensus       235 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------~~~~~~~~~~~-~~~~~-~~--~~  301 (399)
T PRK05122        235 IATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-------AIVSLLVEILG-LLLLW-LA--PS  301 (399)
T ss_pred             HHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHH-HHHHH-Hh--cc
Confidence            336778888656663  45566667788889999999999999987754       22222222111 11111 11  11


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       .+...+..++.|++.+...+ .......+..|++++|++.|+++...+++..+++.+.|++.+..
T Consensus       302 -~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  365 (399)
T PRK05122        302 -PWMALIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF  365 (399)
T ss_pred             -HHHHHHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence             22344455667776665555 44566678889999999999999999999999999999999876

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.59  E-value=3.6e-14  Score=129.21  Aligned_cols=165  Identities=19%  Similarity=0.273  Sum_probs=125.1

Q ss_pred             hhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535           67 KSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII  145 (370)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  145 (370)
                      .+++++|.++.+.....+....+... .++|.|.+..|++..+++.+.++.++..++++++.|+++|+...++..     
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~-----  366 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALV-----  366 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHH-----
Confidence            37889999888888877777775555 688999999999999999999999999999999999999997643320     


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchh
Q 017535          146 LAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFA  225 (370)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  225 (370)
                      ...++.+...  ...++  .+.... .+.+.....++|++.+.... .....+.+.++.++-..++|+...+..++..+|
T Consensus       367 ~~~~~ll~~g--l~~~~--~p~~~~-~~~l~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~g  440 (509)
T KOG2504|consen  367 LFLLTLLIAG--LARLF--LPFATT-YVGLIVFSILFGFCVGSFSS-LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVG  440 (509)
T ss_pred             HHHHHHHHHH--HHHHH--HHHhcc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcC
Confidence            1111111111  11112  122222 34566667777887777665 556688899999999999999999999999999


Q ss_pred             hHHHHHHHHhhcCCCCC
Q 017535          226 PPVVGILAQHVYGFKPI  242 (370)
Q Consensus       226 ~~~~g~l~~~~~g~~~~  242 (370)
                      |++.|++.|.+++|...
T Consensus       441 pPiag~~~d~tg~Y~~~  457 (509)
T KOG2504|consen  441 PPIAGLLYDITGNYDHA  457 (509)
T ss_pred             cccceeeeeccCCeeee
Confidence            99999999999666654

>PRK10133 L-fucose transporter; Provisional

Probab=99.57  E-value=4.6e-13  Score=121.56  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=109.3

Q ss_pred             HHHHhhhccchHHHHHHH-HHhhhhhhHHHHHHHHHHH-H-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           63 IQEAKSVIKIPSFQIIVA-QGVTGSFPWSALSFAAMWL-E-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      .+.+++++++|.++...+ .++.....++...|.+.|+ + .+|+++.++++.+....++.++|+++++++.||+++|+.
T Consensus       248 ~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~  327 (438)
T PRK10133        248 SASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV  327 (438)
T ss_pred             hhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            344567888998655433 3333333355557888886 4 589999999999999999999999999999999998865


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHH
Q 017535          140 NSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  219 (370)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  219 (370)
                             ...+..+......+. ...+ . . .  ....+.+.|++.+...| +.++...+..|++ .+++.++.. +..
T Consensus       328 -------l~~~~~~~~~~~~~~-~~~~-~-~-~--~~~~~~l~glg~~~i~P-~~~s~a~~~~~~~-~~~as~l~~-~~~  391 (438)
T PRK10133        328 -------LAAYALIAMALCLIS-AFAG-G-H-V--GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTI  391 (438)
T ss_pred             -------HHHHHHHHHHHHHHH-HHcC-C-h-H--HHHHHHHHHHHHHHHHH-HHHHHHHcccchh-hccchhHHh-HHh
Confidence                   233222222222121 1122 1 1 1  23345667788888888 7788888877654 778888886 455


Q ss_pred             HhhchhhHHHHHHHHhh
Q 017535          220 ILSSFAPPVVGILAQHV  236 (370)
Q Consensus       220 ~~~~~~~~~~g~l~~~~  236 (370)
                      +++.++|.+.|.+.|..
T Consensus       392 ~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        392 IGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             ccchHHHHHHHHHHHhc
Confidence            78899999999999876

>PRK10054 putative transporter; Provisional

Probab=99.56  E-value=8.5e-14  Score=124.88  Aligned_cols=200  Identities=11%  Similarity=0.141  Sum_probs=121.8

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP   88 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (370)
                      .+|||.+|++.+++.++..++..+.+++++.++..+   +           +.. .+.++++|+|.++......++....
T Consensus       157 ~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~---~-----------~~~-~~~~~~~~~~~~~~~~~~~~l~~~~  221 (395)
T PRK10054        157 MQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE---T-----------GSV-WSPSVLLQDKALLWFTCSGFLASFV  221 (395)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc---h-----------hhh-hhhhhhccCceehHHHHHHHHHHHH
Confidence            369999999988877766555555444432111100   0           000 1235678888865544433333332


Q ss_pred             -HHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           89 -WSALSFAAMWL-E--LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        89 -~~~~~~~~~~~-~--~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                       .....+.+.|+ .  +.+.+....+.+.....+.........|++.||.++|+.       ...+..+... ....+. 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------l~~~~~~~~~-~~~~~~-  292 (395)
T PRK10054        222 SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-------MTAGTLCFVI-GLVGFI-  292 (395)
T ss_pred             HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-------HHHHHHHHHH-HHHHHH-
Confidence             22334666666 2  345566667777777777667777888899998877754       2222222221 111111 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...  ...+.+.+..+..+++.+...| ...+.+.+..|++.+++..+..+ ...+|.++||.++|.+.|+.
T Consensus       293 ~~~--~~~~~~~~~~~~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~  360 (395)
T PRK10054        293 FSG--NSLLLWGMSAAVFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL  360 (395)
T ss_pred             Hcc--hHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            111  1233344455666776666666 66778888899999999998765 66789999999999999987

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.56  E-value=3.6e-13  Score=115.51  Aligned_cols=211  Identities=13%  Similarity=0.117  Sum_probs=153.5

Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHH-HHHHHHHhhhh
Q 017535            8 GIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSF-QIIVAQGVTGS   86 (370)
Q Consensus         8 ~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   86 (370)
                      +...=|..+.+.++..++..+..++.++++++...       ..++......++.+..++++.+++.+ ..++..+++.-
T Consensus       194 ~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~-------~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D  266 (438)
T COG2270         194 DGEDVRITGLLAALWWLLFALPMILNVHDAEKISS-------PPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYID  266 (438)
T ss_pred             ccccchhHHHHHHHHHHHHHhHHHhcccccccccc-------cchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence            34456888999999989988888888888654220       01112223346677778888888884 44555666666


Q ss_pred             hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           87 FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        87 ~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ...+.+++...|. ..+|++..+..++.....+.+++|+++.|++.+|++.|+.       ..++.++........+.  
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v-------l~~~lvi~~~~~~~~~~--  337 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV-------LMIGLVILSIAALYLIF--  337 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee-------ehHHHHHHHHHHHHHHH--
Confidence            6677778888888 6999999999999999999999999999999999999966       33333332222222222  


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      ...+.   .+.++..+.|++.|.... ..-++..+.+|+++.+..+|+++..+.....+||.+.+.+.+.++.
T Consensus       338 ~~~~~---~f~i~gll~g~s~G~~qA-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~  406 (438)
T COG2270         338 LEGEL---DFWILGLLVGTSLGGAQA-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGS  406 (438)
T ss_pred             ccccH---HHHHHHHHHHHhcchHHH-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcc
Confidence            11222   233344556666666565 6789999999999999999999999999999999999999998843

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.54  E-value=1.1e-12  Score=117.46  Aligned_cols=153  Identities=18%  Similarity=0.191  Sum_probs=102.9

Q ss_pred             hhccchHHHHHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           68 SVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      +.+++|.++......+..... ....+++|.|+++.|.++.+.+.+.+...++.++++++.|++.||+++|+.       
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-------  267 (381)
T PRK03633        195 PMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-------  267 (381)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-------
Confidence            456777755443333333222 233467899987789999999999998899999999999999999998864       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      ...+..+... ....+.  .  .. .  .....++.|++.....| ...+.+.+..|+++++...+..+...++|+.++|
T Consensus       268 l~~~~~~~~~-~~~~~~--~--~~-~--~~~~~~l~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp  338 (381)
T PRK03633        268 LRVQVFVVIL-GSIAML--S--QA-A--MAPALFILGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGP  338 (381)
T ss_pred             HHHHHHHHHH-HHHHHh--h--hH-H--HHHHHHHHHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222211 111111  1  11 1  12233344544444456 6677777888888788888888888999999999


Q ss_pred             HHHHHHHHhh
Q 017535          227 PVVGILAQHV  236 (370)
Q Consensus       227 ~~~g~l~~~~  236 (370)
                      .+.|++.|+.
T Consensus       339 ~~~G~l~~~~  348 (381)
T PRK03633        339 SFTAMLMQNY  348 (381)
T ss_pred             HHHHHHHHHh
Confidence            9999999987

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.54  E-value=5e-13  Score=118.99  Aligned_cols=201  Identities=16%  Similarity=0.102  Sum_probs=114.9

Q ss_pred             ccCchhHH-HHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhh
Q 017535            9 IPGWRISF-HIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGS   86 (370)
Q Consensus         9 ~~gWr~~f-~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (370)
                      +.+||+.| ++.+++.++..++.+++.++ |+..+...+...+......   .+...+..++.+++|.++..........
T Consensus       162 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (366)
T TIGR00886       162 HLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSV---GTGALGDQLKVFRDRHTWILALLYSVTF  238 (366)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccc---cchhHHHHHHHHhccchhhHHHHHHHHH
Confidence            45899999 44466655555555555554 3221111100000000000   0111224456778887655544443333


Q ss_pred             -hhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           87 -FPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        87 -~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                       ..+....+.|.|+ +.+|+++.+++.+.....+..+++.+++|+++||+++|+.       ...+..............
T Consensus       239 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~~~~~~~  311 (366)
T TIGR00886       239 GSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK-------LLMSFLGVAMGAFLVVLG  311 (366)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh-------HHHHHHHHHHHHHHHHhc
Confidence             3345557889999 6789999999998888899999999999999999998865       222222222122222211


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS  222 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  222 (370)
                      .. .........+..+..++..+...+ ..+++..+..| +++|+++|+.+...++|+
T Consensus       312 ~~-~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       312 LV-SPLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             CC-CcchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence            11 110233333333444444444444 55677777776 579999999999887763

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.54  E-value=4e-13  Score=124.54  Aligned_cols=140  Identities=11%  Similarity=-0.005  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q 017535           88 PWSALSFAAMWLELTGFSHEKTAF------------LMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  155 (370)
Q Consensus        88 ~~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  155 (370)
                      .|+...|.|.+++..|++....+.            ...+..++.+++.+++++++||+|||+.       .+++..+..
T Consensus       304 ~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~-------l~~~~~~~~  376 (502)
T TIGR00887       304 FYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI-------QLMGFFILT  376 (502)
T ss_pred             HHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH-------HHHHHHHHH
Confidence            345556788888778886542211            1223345667788999999999999975       222222222


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          156 PLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ....++............ +....+...++.....+ ..+.+..|.+|++.|+++.|+.+.+..++++++|.+.+.+.+.
T Consensus       377 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       377 VLFFVLGFAYNHLSTHGF-LAIYVLAQFFANFGPNA-TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             HHHHHHHHHHHhcchhHH-HHHHHHHHHHHhcCCCc-hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence            111111111111111111 11111111222222234 5577789999999999999999999999999999999999885


Q ss_pred             h
Q 017535          236 V  236 (370)
Q Consensus       236 ~  236 (370)
                      .
T Consensus       455 ~  455 (502)
T TIGR00887       455 G  455 (502)
T ss_pred             c
Confidence            3

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.54  E-value=1.8e-13  Score=117.18  Aligned_cols=129  Identities=17%  Similarity=0.238  Sum_probs=105.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHH
Q 017535           95 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  174 (370)
Q Consensus        95 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (370)
                      .|...++.++|..+.|.+.+.+.+...++..+.|.++||.+.|..       +.++++++.++..++  .+.   ...++
T Consensus        52 ~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-------m~~gLilsai~nil~--Gfs---~s~~~  119 (448)
T COG2271          52 MPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-------MAFGLILSAIVNILF--GFS---PSLFL  119 (448)
T ss_pred             cHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-------ehHHHHHHHHHHHHH--hhh---hHHHH
Confidence            455558888999999999999999999999999999999998876       344444443322221  121   24677


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH--HHHHHhh
Q 017535          175 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV--GILAQHV  236 (370)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--g~l~~~~  236 (370)
                      +.++.++.|++.|+..| ++...+...+|+++||+..|+.|...++|+++.|++.  +++.++.
T Consensus       120 ~~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         120 FAVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            88888999999999999 8889999999999999999999999999999999999  7777664

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.53  E-value=1.2e-12  Score=133.43  Aligned_cols=161  Identities=14%  Similarity=0.117  Sum_probs=113.1

Q ss_pred             hhHHHHhhhccchHHHHHHHHHhhh-hhhHHHHHHHHHHH-HHhCCCHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017535           61 VLIQEAKSVIKIPSFQIIVAQGVTG-SFPWSALSFAAMWL-ELTGFSHE-KTAFLMALFVIASSLGGLFGGRMGDFLSAR  137 (370)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~s~~-~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  137 (370)
                      ...+.++.+++++.++..++..++. ...+....++|.|+ +.+|++.. ..+++.+...++.+++.++.|++.||++++
T Consensus       220 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~  299 (1146)
T PRK08633        220 LLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL  299 (1146)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc
Confidence            3455677788888866655444333 33344557888888 78999998 999999999999999999999999998877


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHH
Q 017535          138 FPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF  217 (370)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  217 (370)
                      +.       ..++.++..+.. +.+. ..  . ..+.+.+..+++|++.+...+ ...+++.+..|++.||+++|+.+++
T Consensus       300 ~~-------~~~~~~~~~~~~-~~~~-~~--~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~  366 (1146)
T PRK08633        300 GL-------VPLGALGLALSL-FLLP-TA--P-SLASVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFL  366 (1146)
T ss_pred             cc-------hhHHHHHHHHHH-HHHH-Hh--h-hHHHHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHH
Confidence            65       222222222111 1111 11  1 233455566777777776666 6788888999999999999999999


Q ss_pred             HHHhhchhhHHHHHHHH
Q 017535          218 ESILSSFAPPVVGILAQ  234 (370)
Q Consensus       218 ~~~~~~~~~~~~g~l~~  234 (370)
                      .+++..+++.+++.+..
T Consensus       367 ~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        367 QNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99998888777665544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.53  E-value=1.3e-12  Score=117.13  Aligned_cols=210  Identities=12%  Similarity=0.082  Sum_probs=124.8

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      |+.+.+. .|+..+.+.+.+.++. .+..+.+|+++.++...+  .  +..   ...++.++..+.++++|.+.......
T Consensus       144 gG~l~~~-~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~--~--~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~  214 (393)
T PRK11195        144 GGALADP-HAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQS--W--NPI---ALLRDFFHACRVLWRDKLGRFSLAGT  214 (393)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccC--C--CHH---HHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            4445453 3777777766554333 333445565322111000  0  000   00123344456778888755443332


Q ss_pred             -hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           83 -VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 -~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                       +............|.|+ +.+|.++.+.|++.+...++.+++.++.+++.||.++++.       ...+..++..  ..
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~-------~~~g~~~~~~--~~  285 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV-------LPAGILMGLV--VL  285 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-------HHHHHHHHHH--HH
Confidence             22222233334567777 6789999999999999999999999999999988766643       2222222211  11


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc-hhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS-RTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+ ...  + ..+...+..++.|++.+...+ +..+.+++..|++. +|++.++.+...+++..++..+.+.+ +..
T Consensus       286 ~~-~~~--~-~~~~~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~  356 (393)
T PRK11195        286 LM-ALQ--H-SLLPAYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKL  356 (393)
T ss_pred             HH-HHH--h-HHHHHHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHc
Confidence            11 111  1 233344555667777776666 66777787666554 79999999999999999999998865 444

>PRK12382 putative transporter; Provisional

Probab=99.53  E-value=1.4e-12  Score=117.11  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           91 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        91 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      ...+.|.|+++.+++.  .+.......++.+++.++.|++.||+++|+.       ..++..+..... ..+. ..  +.
T Consensus       235 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-------~~~~~~~~~~~~-~~~~-~~--~~  301 (392)
T PRK12382        235 IGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-------AIVSLLVETVGL-LLLW-LA--PT  301 (392)
T ss_pred             HHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-------hHHHHHHHHHHH-HHHH-Hc--cc
Confidence            3467788886667654  4555666777888999999999999998876       233322222211 1121 11  11


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                       .+...+..++.|++.+...+ ...+.+.+..|+++||++.|+.++..+++..++|.+.|++.|.. ||
T Consensus       302 -~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~  367 (392)
T PRK12382        302 -AWVALAGAALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GY  367 (392)
T ss_pred             -HHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-Cc
Confidence             23344455666666665556 55677788899999999999999999999999999999999987 53

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.53  E-value=1.6e-12  Score=116.00  Aligned_cols=251  Identities=15%  Similarity=0.136  Sum_probs=148.4

Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCC--CCCCCcc---------cc-Cccc----chhh-----hhhH
Q 017535            6 FMGIPGWRISFHIVGLISVVVGTLVRLFAND-PHFPDG--GTANSDQ---------VS-SKSF----RSDV-----KVLI   63 (370)
Q Consensus         6 ~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~---------~~-~~~~----~~~~-----~~~~   63 (370)
                      +...-.|++.+.+..+++++..++..++ || |+.--.  .++++..         .+ ++..    .+..     +...
T Consensus       177 lGt~~~W~~l~~~~~i~~~~~l~~l~~~-PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~  255 (485)
T KOG0569|consen  177 LGTEDLWPYLLAFPLIPALLQLALLPFL-PESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQ  255 (485)
T ss_pred             cCCCcchHHHHHHHHHHHHHHHHHHhcC-CCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccC
Confidence            3455679999999988888877766555 55 652110  0000000         00 0000    0000     0012


Q ss_pred             HHHhhhccchHHHH-----HHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017535           64 QEAKSVIKIPSFQI-----IVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSAR  137 (370)
Q Consensus        64 ~~~~~~~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  137 (370)
                      ..++++++++....     +...+...... +....|...+++..|++..++.+.....++...+.++++.++.||+|||
T Consensus       256 ~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRR  335 (485)
T KOG0569|consen  256 ISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRR  335 (485)
T ss_pred             CcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            23567777765322     22233333333 3444566677799999999999999999999999999999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHH--hCCCCC-ChhH---HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHH
Q 017535          138 FPNSGRIILAQISSLSAIPLAALLLL--VLPDDP-STPV---MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY  211 (370)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~  211 (370)
                      ..       ++++..++.....++..  ...... .+..   +..++.+...+..| ..| +.+-+.+|.+|++.|+.+.
T Consensus       336 pL-------ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G-~gp-i~~fi~aELf~~~~R~aa~  406 (485)
T KOG0569|consen  336 PL-------LLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIG-PGP-IPWFIGAELFPQSARSAAQ  406 (485)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcC-CCc-hhHHHHHHhCCccchHHHH
Confidence            65       23322222221111111  111111 1111   12222233333333 245 7788999999999999999


Q ss_pred             HHHHHHHHHhhchhhHHHHHHHHhhcCCCCCCCCCCccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Q 017535          212 AMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYSTYPRD  291 (370)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (370)
                      ++..++..+..++-......+.+..|+|.                         +    .++.+.+++.....++..|++
T Consensus       407 s~~~~~~w~~~fiv~~~fp~l~~~~g~~~-------------------------f----ilF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  407 SVATAVNWLSNFIVGFAFPPLQNVIGPYV-------------------------F----ILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcchh-------------------------h----HHHHHHHHHHHHHHHHhCccc
Confidence            99999999999988888888888873311                         1    234455566666677777776


Q ss_pred             HHHH
Q 017535          292 RERA  295 (370)
Q Consensus       292 ~~~~  295 (370)
                      +.+.
T Consensus       458 kgr~  461 (485)
T KOG0569|consen  458 KGRT  461 (485)
T ss_pred             CCCC
Confidence            6543

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.52  E-value=7.5e-13  Score=119.93  Aligned_cols=166  Identities=14%  Similarity=0.090  Sum_probs=115.9

Q ss_pred             hHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCC
Q 017535           62 LIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPN  140 (370)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  140 (370)
                      ...+++.+.++|.+...+............. ..+|.+.++.+.++.+.|++.+...++..++.++.|+++||++||+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l   85 (417)
T PRK10489          6 WLLDLSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI   85 (417)
T ss_pred             HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence            3445556667888666555544444444444 567777777888999999999999999999999999999999999862


Q ss_pred             chhHHHHHHHHHHHHHHHH-HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHH
Q 017535          141 SGRIILAQISSLSAIPLAA-LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFES  219 (370)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  219 (370)
                             .++..+...... +....+...+ ..+.+.+..++.|++.+...+ ...+++.+.+|+++++++.++.+...+
T Consensus        86 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T PRK10489         86 -------LLARGTCGLGFIGLALNAFLPEP-SLLAIYLLGLWDGFFGSLGVT-ALLAATPALVGRENLMQAGAITMLTVR  156 (417)
T ss_pred             -------EehHHHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHH-HHhhhhhhccCHHHHHHHHHHHHHHHh
Confidence                   222111111111 1111111122 234455566666776666555 667788899999999999999999999


Q ss_pred             HhhchhhHHHHHHHHhh
Q 017535          220 ILSSFAPPVVGILAQHV  236 (370)
Q Consensus       220 ~~~~~~~~~~g~l~~~~  236 (370)
                      +|..+||.+.|.+.+..
T Consensus       157 ~g~~~g~~l~g~l~~~~  173 (417)
T PRK10489        157 LGSVISPALGGLLIAAG  173 (417)
T ss_pred             HHHHhHHHHHHHHHHHH
Confidence            99999999999998875

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.52  E-value=5.9e-12  Score=112.03  Aligned_cols=163  Identities=17%  Similarity=0.213  Sum_probs=111.2

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhhHHH-HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCch
Q 017535           65 EAKSVIKIPSFQIIVAQGVTGSFPWSA-LSFAAMWLELTG-FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSG  142 (370)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~  142 (370)
                      +..+++|+|.+..+++..++....... .+|.+.|+++.| .+....+.+.++..++-++...+.+++..|+|.++.   
T Consensus       199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l---  275 (400)
T PF03825_consen  199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL---  275 (400)
T ss_pred             HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH---
Confidence            345799999976666555555555444 478899998877 777888887777788888888888999999887754   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHH-HHH
Q 017535          143 RIILAQISSLSAIPLAALLLLVLPDDPSTP-VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF-ESI  220 (370)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~  220 (370)
                          +.++.+. ..+=..++....++.... +...+...+.|+..+.... ....++.+.+|++.|+++.++++.. ..+
T Consensus       276 ----l~~a~~~-~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Gl  349 (400)
T PF03825_consen  276 ----LLLALVA-YAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGL  349 (400)
T ss_pred             ----HHHHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhH
Confidence                3333222 222222222221221111 1111212346666665555 5678889999999999999998876 468


Q ss_pred             hhchhhHHHHHHHHhh
Q 017535          221 LSSFAPPVVGILAQHV  236 (370)
Q Consensus       221 ~~~~~~~~~g~l~~~~  236 (370)
                      |+.+|..++|++.|+.
T Consensus       350 g~~iG~~igG~l~~~~  365 (400)
T PF03825_consen  350 GGAIGSLIGGWLYDAF  365 (400)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999999998

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.52  E-value=1.6e-12  Score=116.95  Aligned_cols=198  Identities=13%  Similarity=0.138  Sum_probs=120.5

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHH-HHHhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIV-AQGVTGSF   87 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   87 (370)
                      ..+||++|++.+++.++..++.. +.+.|+.++.+.  ++           ....+..++++|+|.++... ..+++...
T Consensus       182 ~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~--~~-----------~~~~~~~~~~~~~~~~~~~~l~~f~yvg~  247 (410)
T TIGR00885       182 LASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA--KQ-----------ISFSASLSRLARIRHYREGVIAQFFYVGV  247 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc--cc-----------ccchhhHHHHHhChhHHHHHHHHHHHHHH
Confidence            35799999999987776654443 334443211110  00           01112334677888865543 34444333


Q ss_pred             hHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           88 PWSALSFAAMWLELT--GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        88 ~~~~~~~~~~~~~~~--g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      .....++++.|.++.  +.+....+...+....+..+|+++++++.||+++|+.       ..+..+++..+..+... .
T Consensus       248 e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~-------l~i~~~~~~~~~ll~~~-~  319 (410)
T TIGR00885       248 QIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV-------LMAYAIIGMALCLGSIF-A  319 (410)
T ss_pred             HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-------HHHHHHHHHHHHHHHHH-c
Confidence            345557889988543  4555555666666678889999999999999988865       23333333222222221 1


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      . . . .  ....+++.|++.+..+| ..++...+..+++.+..+.++...  .+|+++.|.+.|++.|..
T Consensus       320 ~-~-~-~--~~~~l~~~glf~s~~fp-~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       320 G-G-H-V--GLYCLTLCSAFMSLMFP-TIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             C-C-h-H--HHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHHHHHHh
Confidence            1 1 1 1  23455566677776777 788888888887754444444443  399999999999999964

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.51  E-value=2.6e-12  Score=118.47  Aligned_cols=265  Identities=15%  Similarity=0.196  Sum_probs=164.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCC------CCC-CCc---cccCcccchhhhhhHHHHhhhccchHHHHHHH
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFANDPHFPDG------GTA-NSD---QVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA   80 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~------~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
                      .|..-|++.+.+.++.++..++++++.++..+      .+. +.+   .+.........++..+.++++++||.+...++
T Consensus       320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l  399 (735)
T KOG3626|consen  320 AWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVL  399 (735)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHH
Confidence            38889999999999999999888777332211      000 000   01122222344677888899999999887766


Q ss_pred             HHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHH
Q 017535           81 QGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL  157 (370)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  157 (370)
                      ..++.... .++.+|+|.|+ +++|.++..+..+.+...+ +..+|.+++|++..|+.-+..  ......++..++.+.+
T Consensus       400 ~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r--~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  400 ASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSAR--GAAKFVIVCSVLSLLF  477 (735)
T ss_pred             HHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHH--HHHHHHHHHHHHHHHH
Confidence            66655555 56669999999 8999999999999987765 667899999999998754432  1222223333333322


Q ss_pred             HHHHHH-h------------------------------------------------------------------------
Q 017535          158 AALLLL-V------------------------------------------------------------------------  164 (370)
Q Consensus       158 ~~~~~~-~------------------------------------------------------------------------  164 (370)
                      ....++ .                                                                        
T Consensus       478 ~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~y  557 (735)
T KOG3626|consen  478 YSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIY  557 (735)
T ss_pred             HHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceee
Confidence            122211 1                                                                        


Q ss_pred             -----CC----CCC-----------ChhHHHHHHHHHHHH-HHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hh
Q 017535          165 -----LP----DDP-----------STPVMHGLVLVVTGL-FISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LS  222 (370)
Q Consensus       165 -----~~----~~~-----------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~  222 (370)
                           .+    ...           ....+.+++++.++. ..+...+ +.+.++.+.++++.|..+.|+..++..+ |.
T Consensus       558 tnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~-p~~~i~LR~V~~e~ks~AlG~~~~~irllg~  636 (735)
T KOG3626|consen  558 TNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAV-PGMLIVLRCVPPEEKSFALGFQWMLIRLLGF  636 (735)
T ss_pred             ccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccC-cceEEEEEccCchhchhhhHHHHHHHHHHhc
Confidence                 00    000           000122333333333 3333334 5677788899999999999998887665 55


Q ss_pred             chhhHHHHHHHHhhc-CCCCCCCCCCccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH
Q 017535          223 SFAPPVVGILAQHVY-GFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSF  283 (370)
Q Consensus       223 ~~~~~~~g~l~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (370)
                      +.+|++.|++.|..- -|...     =+....|..++.+.+++.++.+..+.-.+.++.+++
T Consensus       637 IPsPIifG~~ID~tCl~W~~~-----C~~~GsC~iYd~~~lr~~y~gl~~~~~~~~~i~~i~  693 (735)
T KOG3626|consen  637 IPSPIIFGAVIDTTCLLWGKS-----CGSRGSCLIYDNDSLRYRYLGLHIILKVIALILLII  693 (735)
T ss_pred             CCchHhhhhhHhhHHHHhhcc-----cCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999851 11110     012456788899999987665544443444433333

>PRK10054 putative transporter; Provisional

Probab=99.51  E-value=1.8e-12  Score=116.31  Aligned_cols=147  Identities=14%  Similarity=0.162  Sum_probs=103.1

Q ss_pred             HHHHHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 017535           75 FQIIVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL  152 (370)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  152 (370)
                      ++.++...++.... +....++|.|+ +++|++..+.+++.+...++.+++.++.|+++||+|+|+.       +.++..
T Consensus         9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-------~~~~~~   81 (395)
T PRK10054          9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-------MLLAIT   81 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-------HHHHHH
Confidence            44444444444444 44457889999 7899999999999999999999999999999999999875       233322


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          153 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      +... ..+.+. +.  +. .+.+.+..++.+.+.+...+ ...++..+..|+++|+++.|+.+...++|.+++|.+.+++
T Consensus        82 ~~~~-~~~~~~-~~--~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l  155 (395)
T PRK10054         82 AFAS-GFIAIP-LV--NN-VTLVVLFFALINCAYSVFST-VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLL  155 (395)
T ss_pred             HHHH-HHHHHH-HH--hH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2221 111111 11  11 22233334444555444455 5678888999999999999999999999999999999988


Q ss_pred             HH
Q 017535          233 AQ  234 (370)
Q Consensus       233 ~~  234 (370)
                      .+
T Consensus       156 ~~  157 (395)
T PRK10054        156 VM  157 (395)
T ss_pred             HH
Confidence            75

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.49  E-value=2.7e-12  Score=113.30  Aligned_cols=182  Identities=23%  Similarity=0.362  Sum_probs=131.3

Q ss_pred             cccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHH-HH
Q 017535            4 MTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA-QG   82 (370)
Q Consensus         4 ~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   82 (370)
                      +.+.+..+||+.|++.+++.++..++..+..                                      |.++.... .+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~  185 (352)
T cd06174         144 GLLAESLGWRWLFLILAILGLLLALLLLFLL--------------------------------------RLLLLLALAFF  185 (352)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHH
Confidence            3455667899999998887777666554442                                      22233333 33


Q ss_pred             hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhC-CCchhHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF-PNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      +..........+.|.++ +..|.+..+.+.+.....++..++.++.+++.||+++|+ .       ...+..+.......
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~  258 (352)
T cd06174         186 LLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL-------LLIGLLLAALGLLL  258 (352)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHHHHHHHHHHHH
Confidence            33333344457888888 555999999999999999999999999999999999987 4       23333322222221


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       +. ..  .. .+...+..++.|++.+...+ ...+++.+..|+++|++..|+.+...+++..+++.+.|.+.+..
T Consensus       259 -~~-~~--~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~  328 (352)
T cd06174         259 -LA-LA--PS-LALLLVALLLLGFGLGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG  328 (352)
T ss_pred             -HH-Hh--cc-HHHHHHHHHHHHHHHhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             11 11  11 34456667778888887777 88999999999999999999999999999999999999999865

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.49  E-value=2.3e-12  Score=116.66  Aligned_cols=150  Identities=13%  Similarity=0.093  Sum_probs=104.1

Q ss_pred             HHHHHH-HHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHHHH
Q 017535           75 FQIIVA-QGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISS  151 (370)
Q Consensus        75 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~  151 (370)
                      ++.++. ...-....|++..++|.|+ +.+|++..+++.+.+.+.+...++.+++|+++||+ |||+.       ..++.
T Consensus        11 l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-------iliG~   83 (493)
T PRK15462         11 IYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-------VMLGA   83 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-------HHHHH
Confidence            444333 3333444466668999999 77899999999999999999999999999999999 99875       33333


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCC--chhHHHHHHHHHHHHhhchhhHHH
Q 017535          152 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      ++...... .+ .........  +.+.+....++.+...+ +..+++.+.+|++  .|.++.++..+..++|+.++|.+.
T Consensus        84 il~~lg~l-ll-~~~~~~~~~--~~l~l~li~iG~G~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~  158 (493)
T PRK15462         84 LLMAIGHV-VL-GASEIHPSF--LYLSLAIIVCGYGLFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIAC  158 (493)
T ss_pred             HHHHHHHH-HH-HHhhcchhH--HHHHHHHHHHhcccccc-cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHH
Confidence            33322211 11 111111111  22222233344455555 6678899999875  699999999999999999999999


Q ss_pred             HHHHHhh
Q 017535          230 GILAQHV  236 (370)
Q Consensus       230 g~l~~~~  236 (370)
                      |++.+..
T Consensus       159 g~L~~~~  165 (493)
T PRK15462        159 GYAQEEY  165 (493)
T ss_pred             HHHHhhh
Confidence            9998876

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.49  E-value=1.8e-12  Score=118.77  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=112.6

Q ss_pred             hccchH-HHHHHHHHhhhhh-hHHHHHHHHHHH-HH--hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCch
Q 017535           69 VIKIPS-FQIIVAQGVTGSF-PWSALSFAAMWL-EL--TGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSG  142 (370)
Q Consensus        69 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~-~~--~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~  142 (370)
                      .+++|. ++.++...++... .|+...++|.|+ +.  +|++..+++.+.+.+.++..++.+++|+++|| +|||+.   
T Consensus         5 ~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~---   81 (475)
T TIGR00924         5 FFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT---   81 (475)
T ss_pred             ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH---
Confidence            345555 5555544444444 456668999999 55  89999999999999999999999999999999 799976   


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc---hhHHHHHHHHHHH
Q 017535          143 RIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS---RTSVYAMDRSFES  219 (370)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~  219 (370)
                          +.++..+..+.. ..+. ...  . .+.+.+..++.|++.+...| ...+++.+.+|++.   |+++.++.+...+
T Consensus        82 ----l~~~~~~~~~g~-~~~~-~~~--~-~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~n  151 (475)
T TIGR00924        82 ----MVLGGIVLMLGH-FMLA-MSI--Y-PDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFYMSIN  151 (475)
T ss_pred             ----HHHHHHHHHHHH-HHHH-hcc--c-HhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHHHHHH
Confidence                333333332222 2111 221  1 22344555667777777777 77888888887653   8889999999999


Q ss_pred             HhhchhhHHHHHHHHhh
Q 017535          220 ILSSFAPPVVGILAQHV  236 (370)
Q Consensus       220 ~~~~~~~~~~g~l~~~~  236 (370)
                      +|..+||.+.|++.+..
T Consensus       152 iG~~ig~~l~g~l~~~~  168 (475)
T TIGR00924       152 IGSFISPLLAGVIAENY  168 (475)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            99999999999998876

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.48  E-value=2e-12  Score=114.95  Aligned_cols=135  Identities=11%  Similarity=0.116  Sum_probs=103.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH-HHHhCCCCCCh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL-LLLVLPDDPST  171 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  171 (370)
                      ..+|.|..+.+.+..+.+++.+...++.+++.++.|+++||+|||+.       ...+..+....... .+..... ...
T Consensus        20 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~~~~~~-~~~   91 (365)
T TIGR00900        20 VALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKV-------MIGADLIRAVLVAVLPFVALLG-GLN   91 (365)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHH-------HHHHHHHHHHHHHHHHHHHHcC-CCc
Confidence            45677777789999999999999999999999999999999999976       23332222211111 1111111 123


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+.+..++.|++.+...+ ...+++.+.+|+++|+++.++.+....+|..++|.+.+.+.+..
T Consensus        92 ~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  155 (365)
T TIGR00900        92 IWQVYVLAGILAIAQAFFTP-AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATL  155 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45566677778888887777 77899999999999999999999999999999999999998876

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.48  E-value=1.6e-11  Score=115.99  Aligned_cols=269  Identities=15%  Similarity=0.183  Sum_probs=157.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCC--CCCccc----cC---cccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535           12 WRISFHIVGLISVVVGTLVRLFAND-PHFPDGGT--ANSDQV----SS---KSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus        12 Wr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~--~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      ||..|++.++++++.++++++++++ |+.....+  ..+.+.    ..   .......++..+.++.+++||.++...+.
T Consensus       259 Wwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~  338 (633)
T TIGR00805       259 WWIGFLICGGVALLTSIPFFFFPKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILA  338 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8888999998888877766655544 32211110  000000    00   00001123455677889999997776555


Q ss_pred             Hhhh-hhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH
Q 017535           82 GVTG-SFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA  158 (370)
Q Consensus        82 ~~~~-~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~  158 (370)
                      .++. ...+++.+|+|.|+ +.+|+++.+++++.++..+ +.++|.+++|+++||++.+...  .+...++..++.+...
T Consensus       339 ~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~--~~~~~~~~~~~~~~~~  416 (633)
T TIGR00805       339 QVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKK--AAYFAICLSTLSYLLC  416 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHH--HHHHHHHHHHHHHHHH
Confidence            4444 44466778999999 7899999999999888766 6789999999999998754321  1122222222221111


Q ss_pred             H-HHHHh----------------------CC---------CC--------------------------------------
Q 017535          159 A-LLLLV----------------------LP---------DD--------------------------------------  168 (370)
Q Consensus       159 ~-~~~~~----------------------~~---------~~--------------------------------------  168 (370)
                      . .+++.                      ..         ..                                      
T Consensus       417 ~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~~~y~~CsC  496 (633)
T TIGR00805       417 SPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSNMVYTNCSC  496 (633)
T ss_pred             HHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCcceeccccc
Confidence            1 00000                      00         00                                      


Q ss_pred             ----------------C-Ch-hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHh-hchhhHHH
Q 017535          169 ----------------P-ST-PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESIL-SSFAPPVV  229 (370)
Q Consensus       169 ----------------~-~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~  229 (370)
                                      . .. ...+.+.+++..+..+.... +....+.+.+|+++|+.+.|+..++..+- ...+|++.
T Consensus       497 i~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~-p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~f  575 (633)
T TIGR00805       497 VQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAV-PLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILF  575 (633)
T ss_pred             ccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccC-chheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHH
Confidence                            0 00 11222233333333333334 45667778899999999999988877654 58899999


Q ss_pred             HHHHHhhcC-CCCCCCCCCccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017535          230 GILAQHVYG-FKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYST  287 (370)
Q Consensus       230 g~l~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (370)
                      |++.|..-- |+..    .-+....|..++...+++.+..+....-+++.++++..++.
T Consensus       576 G~~iD~sC~~W~~~----~cg~~g~C~~Yd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  630 (633)
T TIGR00805       576 GLLIDVSCLHWQTL----CCGARGACRMYDNDNLRNIYLGLTIALRGSGLLLLFFILIL  630 (633)
T ss_pred             hhhhhchhheeccc----cCCCCCceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            999998611 1110    00234678888999998888766544444555444444443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.48  E-value=3.4e-12  Score=116.31  Aligned_cols=132  Identities=16%  Similarity=0.187  Sum_probs=94.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      ..| ++++.|+++.+.+++.+...++..++.++.|+++||+|+|+.       ..++.++....... ....+.......
T Consensus        49 ~~p-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~~~  119 (438)
T TIGR00712        49 AMP-YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILSAAVMLL-MGFVPWATSSIA  119 (438)
T ss_pred             hhH-HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-------hHHHHHHHHHHHHH-HhccccccchHH
Confidence            344 444469999999999999999999999999999999998876       23332222222111 111111112234


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .+.+..++.|++.+...+ .....+.+.+|+++|++++++.+....+++.+++.+.+.+.+.
T Consensus       120 ~l~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~  180 (438)
T TIGR00712       120 IMFVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW  180 (438)
T ss_pred             HHHHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            455556677777776666 5677888899999999999999999999999999888766554

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.47  E-value=6.6e-12  Score=112.90  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHH
Q 017535           73 PSFQIIVAQGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  151 (370)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~  151 (370)
                      ++.+.+...++.....+....++|.|+ +++|+++.+.|++.+...+...+..+++|+++||+++|+.       +..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-------l~~~~   83 (400)
T PRK11646         11 GKYFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-------IVTGM   83 (400)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-------HHHHH
Confidence            334444444454445556667888888 8899999999999999999999999999999999998865       33333


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHH
Q 017535          152 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  231 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  231 (370)
                      .+....... .. ..  + ..+.+.+..++.|++.+...| ...+++.+.+|+++|+++.|+.+...++|..+||.+.|+
T Consensus        84 ~~~~~~~~~-~~-~~--~-~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~  157 (400)
T PRK11646         84 LMRAAGFAT-MA-IA--H-EPWLLWLSCILSGLGGTLFDP-PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSW  157 (400)
T ss_pred             HHHHHHHHH-HH-Hh--c-cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333222222 21 11  2 244455666777877766666 667888899999999999999999999999999999999


Q ss_pred             HHH
Q 017535          232 LAQ  234 (370)
Q Consensus       232 l~~  234 (370)
                      +.+
T Consensus       158 l~~  160 (400)
T PRK11646        158 LLQ  160 (400)
T ss_pred             HHH
Confidence            983

>TIGR00898 2A0119 cation transport protein

Probab=99.46  E-value=5e-12  Score=117.53  Aligned_cols=152  Identities=17%  Similarity=0.046  Sum_probs=90.9

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchh
Q 017535           65 EAKSVIKIPSFQIIVAQGVTGSFPWSALSF-AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGR  143 (370)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  143 (370)
                      .++.++++|.++...+.....+.......+ ++.++...+.+.....   ...++..+++.++.+++.||+|||+.    
T Consensus       315 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~dr~grr~~----  387 (505)
T TIGR00898       315 SFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDL---FISGLVELPAKLITLLLIDRLGRRYT----  387 (505)
T ss_pred             cHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHH---HHHHHHHHHHHHHHHHHHHHhCCHHH----
Confidence            456788888865544433333333222222 2333355666543332   34466778889999999999998865    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhc
Q 017535          144 IILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  223 (370)
                         ..+..++..... +.+...+....  +......++.+++.+...+ ..+.+..|.+|++.|+++.|+.+++..+|+.
T Consensus       388 ---~~~~~~~~~~~~-l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~  460 (505)
T TIGR00898       388 ---MAASLLLAGVAL-LLLLFVPVDLY--FLRTALAVLGKFGITSAFQ-MVYLYTAELYPTVVRNLGVGVCSTMARVGSI  460 (505)
T ss_pred             ---HHHHHHHHHHHH-HHHHHcCCCch--HHHHHHHHHHHHHHHHHHH-HHHHHhcccccHHHHhhhHhHHHHHHHHHHH
Confidence               233222222221 22222222211  2222333333444444444 5678889999999999999999999999999


Q ss_pred             hhhHHHH
Q 017535          224 FAPPVVG  230 (370)
Q Consensus       224 ~~~~~~g  230 (370)
                      ++|.+.+
T Consensus       461 i~p~i~~  467 (505)
T TIGR00898       461 ISPFLVY  467 (505)
T ss_pred             HHhHHHH
Confidence            9999988

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.45  E-value=1.1e-11  Score=112.82  Aligned_cols=134  Identities=20%  Similarity=0.282  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017535           90 SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  169 (370)
Q Consensus        90 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (370)
                      ....++|.+.+++|++..+.+++.+...++..++.++.|++.||+|+|+.       ..++.++...... ... ..  +
T Consensus        41 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-------~~~~~~~~~~~~~-~~~-~~--~  109 (434)
T PRK11663         41 SFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-------MGIGLIATGIINI-LFG-FS--S  109 (434)
T ss_pred             hHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-------HHHHHHHHHHHHH-HHH-HH--h
Confidence            33456788888899999999999999999999999999999999999876       3333333222221 111 11  1


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          170 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       ..+.+.+..++.|++.+...+ ...+++.+.+|+++|+++.++.+...++|+.++|.+.+++.+..
T Consensus       110 -~~~~l~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  174 (434)
T PRK11663        110 -SLWAFALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY  174 (434)
T ss_pred             -HHHHHHHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence             234455556667777777667 77888899999999999999999999999999999999988765

>TIGR00895 2A0115 benzoate transport

Probab=99.44  E-value=6.9e-12  Score=112.85  Aligned_cols=134  Identities=19%  Similarity=0.164  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      .+.|.+.+++|.+..+.+++.+...++.+++.++.|+++||+|||+.       ..++..+....... .. ..  . ..
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~-~~-~~--~-~~  105 (398)
T TIGR00895        38 FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV-------LLWSILLFSVFTLL-CA-LA--T-NV  105 (398)
T ss_pred             hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH-------HHHHHHHHHHHHHH-HH-Hc--c-ch
Confidence            44566668899999999999999999999999999999999998865       23332222222111 11 11  1 23


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|++.|+++.++.+....+|..+++.+.+++.+.. ||.
T Consensus       106 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~  171 (398)
T TIGR00895       106 TQLLILRFLAGLGLGGLMP-NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVF-GWR  171 (398)
T ss_pred             HHHHHHHHHHhcccccchh-hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcc-cce
Confidence            4455667778887777777 77899999999999999999999999999999999999998876 544

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.43  E-value=7.2e-12  Score=114.96  Aligned_cols=150  Identities=13%  Similarity=0.081  Sum_probs=109.4

Q ss_pred             HHHHHHHH-hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCchhHHHHHHHH
Q 017535           75 FQIIVAQG-VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIILAQISS  151 (370)
Q Consensus        75 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~~~~~~  151 (370)
                      ++.++... .-....|+...+++.|+ +.+|++..+++++...+.....+..+++|+++|| +|||+.       ..++.
T Consensus        16 ~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-------~~~g~   88 (489)
T PRK10207         16 FFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-------IVLGA   88 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-------HHHHH
Confidence            44444333 33444466668899999 7899999999998888887788888899999999 999986       34443


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCC--chhHHHHHHHHHHHHhhchhhHHH
Q 017535          152 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      ++..+......+  ....  ...+.+..++.+++.+...| +..+++.+.+|++  +|+.++++..+..++|.+++|.++
T Consensus        89 ~~~~~g~~~~~~--~~~~--~~ll~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~  163 (489)
T PRK10207         89 IVLAIGYFMTGM--SLLK--PDLIFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLA  163 (489)
T ss_pred             HHHHHHHHHHHH--hccc--hhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHH
Confidence            333322222222  1111  12233456667888888787 7789999999876  457889999999999999999999


Q ss_pred             HHHHHhh
Q 017535          230 GILAQHV  236 (370)
Q Consensus       230 g~l~~~~  236 (370)
                      |++.+..
T Consensus       164 g~l~~~~  170 (489)
T PRK10207        164 PVIADKF  170 (489)
T ss_pred             HHHHHhh
Confidence            9998876

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.43  E-value=2.7e-11  Score=103.46  Aligned_cols=197  Identities=18%  Similarity=0.235  Sum_probs=134.2

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHH-HHHHHhhhhhhH
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQI-IVAQGVTGSFPW   89 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   89 (370)
                      .||++|.+.+.+.+++.+... ..|.|+.+...++..+.          ++.  ...+++++|.++. .+..+++...-.
T Consensus       187 ~v~~pYl~~~~~lvll~v~~~-~~k~p~~~~~~~~~~~~----------~~~--~~~~l~~~~~~~~gvl~~FlYVG~Ev  253 (422)
T COG0738         187 SVQFPYLILAGLLVLLAVLIL-LSKLPDLQVAAPSLGAS----------GSA--GLSSLFQNKHLRLGVLAIFLYVGAEV  253 (422)
T ss_pred             hhhhHHHHHHHHHHHHHHHHH-hccCCcCCccccccccc----------ccc--hHHHHHhChHHHHHHHHHHHHHhHHH
Confidence            499999998887776665543 33545433322211110          100  2347889999555 455666666666


Q ss_pred             HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           90 SALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        90 ~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      ...+|++.|+ +..|.+..+++...+.+.++.++|++++.++..|+...+.       ..+.......++....+ . .+
T Consensus       254 a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~-------Laf~a~~~ill~~~~~l-~-~g  324 (422)
T COG0738         254 AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKY-------LAFYALIAILLLLAVAL-I-GG  324 (422)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-------HHHHHHHHHHHHHHHHH-h-cC
Confidence            6678999999 5589999999999999999999999999999999877765       33333333322222221 1 11


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                          .......++.|++.+..+| +.++...+..| + .....|..-.+..+|+++.|++.|++.|..
T Consensus       325 ----~v~~~~l~~ig~F~simfP-TIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~  385 (422)
T COG0738         325 ----VVALYALFLIGLFNSIMFP-TIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMF  385 (422)
T ss_pred             ----hHHHHHHHHHHHHhHHHHH-HHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhh
Confidence                2244556778888888899 88888888888 3 344444555667889999999999999998

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.43  E-value=2e-11  Score=112.61  Aligned_cols=157  Identities=15%  Similarity=0.123  Sum_probs=107.3

Q ss_pred             hhccchH-HHHHHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCchh
Q 017535           68 SVIKIPS-FQIIVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGR  143 (370)
Q Consensus        68 ~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~  143 (370)
                      +.+++|. ++.++....+.... |....+++.|+ +++|++..+++.+.+.+........+++|+++|| +|+|+.    
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~----   90 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV----   90 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH----
Confidence            3556665 66555544444444 66668999999 8899999998888777665555666789999999 599875    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc--hhHHHHHHHHHHHHh
Q 017535          144 IILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS--RTSVYAMDRSFESIL  221 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~  221 (370)
                         ..++.++..... ..+. ....  ....+.+..++.|++.+...+ ...+++.+.+|++.  ++.+.++.++..++|
T Consensus        91 ---~~~g~~~~~ig~-~l~~-~~~~--~~~~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG  162 (500)
T PRK09584         91 ---IMLGAIVLAIGY-ALVA-WSGH--DAGIVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIG  162 (500)
T ss_pred             ---HHHHHHHHHHHH-HHHH-Hhcc--cHHHHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence               333333322221 1111 1111  122344555667777777777 67788899887643  456788889999999


Q ss_pred             hchhhHHHHHHHHhh
Q 017535          222 SSFAPPVVGILAQHV  236 (370)
Q Consensus       222 ~~~~~~~~g~l~~~~  236 (370)
                      ..++|.+.|++.+..
T Consensus       163 ~~~gp~i~g~l~~~~  177 (500)
T PRK09584        163 SFFSMLATPWLAAKY  177 (500)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999999876

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.43  E-value=5.1e-12  Score=113.85  Aligned_cols=157  Identities=15%  Similarity=0.027  Sum_probs=112.8

Q ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHH
Q 017535           72 IPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQI  149 (370)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~  149 (370)
                      ++++..+.+..+......++. ..+|.++ +++|.+..+.+++.+...++..++.++.|+++||+|||+.       +.+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~-------l~~   86 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA-------VVF   86 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch-------HHH
Confidence            344445555444444444444 5788887 7899999999999999999999999999999999999987       333


Q ss_pred             HHHHHHHHHHH-HHHhCCCCC--ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          150 SSLSAIPLAAL-LLLVLPDDP--STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       150 ~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      +.++....... .+.......  .....+.+..++.|++.+...+ ...+++.+.+|+++|+++.++......+|..+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~  165 (399)
T PRK05122         87 GLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGT-GSILWGIGRVGALHTGRVISWNGIATYGALAIGA  165 (399)
T ss_pred             HHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcc-hHHHHHHhhcChhhhccchhhhhhhhhHHHHHHH
Confidence            33322211111 111111111  1234456677788888887777 6677778889999999999999988899999999


Q ss_pred             HHHHHHHHhh
Q 017535          227 PVVGILAQHV  236 (370)
Q Consensus       227 ~~~g~l~~~~  236 (370)
                      .+++.+.+..
T Consensus       166 ~l~~~l~~~~  175 (399)
T PRK05122        166 PLGVLLYHWG  175 (399)
T ss_pred             HHHHHHHHcc
Confidence            9999988865

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.43  E-value=1.5e-11  Score=112.71  Aligned_cols=160  Identities=18%  Similarity=0.173  Sum_probs=121.5

Q ss_pred             hhccchHHHHHHHHHhhhhhhHHHHHH-HHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           68 SVIKIPSFQIIVAQGVTGSFPWSALSF-AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      ..+|||.|..++...+...++..+... ++-++.+..-|+...+++.....+..++..+++|.++||++||+.       
T Consensus         5 aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrri-------   77 (524)
T PF05977_consen    5 APLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRI-------   77 (524)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH-------
Confidence            467899988877777666666444433 344446667889999999999999999999999999999999987       


Q ss_pred             HHHHHHHHHHHHH-HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchh
Q 017535          147 AQISSLSAIPLAA-LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFA  225 (370)
Q Consensus       147 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  225 (370)
                      ++.+-++...+.. +.++.. ......+.++++.++.|++.....| ...+++.+.+|+++...++++.+...++...+|
T Consensus        78 li~~~~~~~~~~~~L~~l~~-~~~~~~~~Ll~~~fl~g~~~a~~~P-A~~A~ip~lV~~~~L~~A~al~s~~~niar~iG  155 (524)
T PF05977_consen   78 LILSQLLRALVALLLAVLAF-FGLLSPWLLLILTFLLGIGSAFFNP-AWQAIIPELVPKEDLPAANALNSISFNIARIIG  155 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhcc
Confidence            3333332222211 111111 2233356677788889998888888 899999999999999999999999999999999


Q ss_pred             hHHHHHHHHhh
Q 017535          226 PPVVGILAQHV  236 (370)
Q Consensus       226 ~~~~g~l~~~~  236 (370)
                      |.++|.+....
T Consensus       156 PalgG~Lva~~  166 (524)
T PF05977_consen  156 PALGGILVAFF  166 (524)
T ss_pred             chHHHHHHHHH
Confidence            99999999876

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK12382 putative transporter; Provisional

Probab=99.42  E-value=4.3e-12  Score=114.03  Aligned_cols=157  Identities=16%  Similarity=0.076  Sum_probs=109.2

Q ss_pred             chHHHHHHHHHhhhhhhHHH-HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHH
Q 017535           72 IPSFQIIVAQGVTGSFPWSA-LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQI  149 (370)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~  149 (370)
                      ++.++.+....+......++ ...+|.++ +++|.|..+.+++.+...++..++.++.|+++||+|||+.       +.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-------l~~   86 (392)
T PRK12382         14 NFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-------ALQ   86 (392)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-------HHH
Confidence            33333333333333333333 35677777 7899999999999999999999999999999999999976       333


Q ss_pred             HHHHHHHHHHHH-HH-hCCC-CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          150 SSLSAIPLAALL-LL-VLPD-DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       150 ~~~~~~~~~~~~-~~-~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      +.+......... .. ..+. ...+.+.+.+..++.|++.+...+ ...+++.+.+|+++|+++.++......++..++|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~  165 (392)
T PRK12382         87 GMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLT-GALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA  165 (392)
T ss_pred             HHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence            322222111111 11 1111 112345566677788887776666 5567778899999999999999998899999999


Q ss_pred             HHHHHHHHhh
Q 017535          227 PVVGILAQHV  236 (370)
Q Consensus       227 ~~~g~l~~~~  236 (370)
                      .+.+.+.+..
T Consensus       166 ~~~~~l~~~~  175 (392)
T PRK12382        166 PLGLLLHSHF  175 (392)
T ss_pred             HHHHHHHhcc
Confidence            9999888765

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.42  E-value=2e-11  Score=115.95  Aligned_cols=130  Identities=15%  Similarity=0.068  Sum_probs=100.9

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      .+|.+.+++|++..+.+++.+...++.+++.+++|+++||+|||+.       +++++++..+..++..+  .  + ..+
T Consensus       189 ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~-------lii~lil~~i~~ll~af--a--~-s~~  256 (742)
T TIGR01299       189 VLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC-------LLICLSVNGFFAFFSSF--V--Q-GYG  256 (742)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHH--H--h-hHH
Confidence            4555558899999999999999999999999999999999999976       23332222222222111  1  1 244


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+..++.|++.+...+ ...+++.+.+|++.||...++.+++..+|.++++.++..+....
T Consensus       257 ~llv~R~l~G~g~g~~~p-~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       257 FFLFCRLLSGFGIGGAIP-IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            566677888888887777 88999999999999999999999999999999999888877655

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.41  E-value=1.9e-11  Score=110.25  Aligned_cols=131  Identities=17%  Similarity=0.090  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.       +.++.++....... .. ..  + ..
T Consensus        33 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-------~~~~~~~~~~~~~~-~~-~~--~-~~  100 (405)
T TIGR00891        33 LVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP-------MVTSIVLFSAGTLA-CG-FA--P-GY  100 (405)
T ss_pred             HHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHH-HH-Hh--c-cH
Confidence            44566668899999999999999999999999999999999999976       33332222222111 11 11  2 24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus       101 ~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891       101 ITMFIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             HHHHHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677888888777777 67888899999999999999999999999999999999888765

>TIGR00788 fbt folate/biopterin transporter

Probab=99.41  E-value=1e-12  Score=120.11  Aligned_cols=225  Identities=12%  Similarity=-0.037  Sum_probs=131.2

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc----c-cCcccchhhhhhHHHHhhhccchHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQ----V-SSKSFRSDVKVLIQEAKSVIKIPSFQI   77 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (370)
                      ++.+.+.+|||..|++.+++.++..+ ..++.+|++.....+..+.+    . ......+..++..++.++.+++|.++.
T Consensus       178 ~G~l~~~~~~~~~f~~~a~l~ll~~~-~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~  256 (468)
T TIGR00788       178 GGPLLDKTLTRILFLITAALLLLQLF-VSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGAIQLLEIAK  256 (468)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHH-HHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHHHhcHHHHH
Confidence            44566778999999999888777643 44555765311111100000    0 000000011333455666788888655


Q ss_pred             HHHHHhh-hhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q 017535           78 IVAQGVT-GSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  155 (370)
Q Consensus        78 ~~~~~~~-~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  155 (370)
                      .+++.++ .....+.....-.+. +..|+++...|++..+.+++.+++..+.+++.+|++.|+.       ..++.++..
T Consensus       257 ~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-------l~~~~~l~~  329 (468)
T TIGR00788       257 PLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-------FGVTTLLYT  329 (468)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-------HHHHHHHHH
Confidence            3333222 111111110000122 5689999999999999999988898888888877776654       233222222


Q ss_pred             HHHHHHHHh---CC--CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          156 PLAALLLLV---LP--DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       156 ~~~~~~~~~---~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      .........   +.  ......+.+....++.+++.+.... +...++++..|++.+|+.+|+.+.+.++|..+++.++|
T Consensus       330 ~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg  408 (468)
T TIGR00788       330 LSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV  408 (468)
T ss_pred             HHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence            111110000   00  0001112233334455555555555 66889999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 017535          231 ILAQHV  236 (370)
Q Consensus       231 ~l~~~~  236 (370)
                      .+.+..
T Consensus       409 ~l~~~~  414 (468)
T TIGR00788       409 LLMETI  414 (468)
T ss_pred             HHHHHc
Confidence            999988

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.40  E-value=8.1e-12  Score=112.21  Aligned_cols=130  Identities=20%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      ..|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.       ..++..+.......... .   . +.+
T Consensus        16 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~~~~~~~~~~~~~~~-~---~-~~~   83 (399)
T TIGR00893        16 AAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-------LAVFIVIWGVFTGLQAF-A---G-AYV   83 (399)
T ss_pred             hHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-------eHHHHHHHHHHHHHHHH-H---c-CHH
Confidence            3455558899999999999999999999999999999999999976       23333222222222111 1   1 245


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus        84 ~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  145 (399)
T TIGR00893        84 SLYILRVLLGAAEAPFFP-GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF  145 (399)
T ss_pred             HHHHHHHHHHHHHHhhhh-HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC
Confidence            567777888888888777 78899999999999999999999999999999999999988776

>PRK10504 putative transporter; Provisional

Probab=99.40  E-value=1.5e-11  Score=113.24  Aligned_cols=149  Identities=14%  Similarity=0.046  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 017535           75 FQIIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS  153 (370)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  153 (370)
                      ++.+....++.... +....++|.+.+++|.++.+.+++.+.+.++..++.++.|+++||+|||+.       ...+..+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~~~~~   84 (471)
T PRK10504         12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI-------FFTAIVL   84 (471)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH-------HHHHHHH
Confidence            34443333333333 344467899888899999999999999899999999999999999999975       2222222


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          154 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      ..... +... ..  + ..+.+.+..++.|++.+...| ...+++.+.+|+++++++.++.+...+++..++|.+.|.+.
T Consensus        85 ~~~~~-~~~~-~~--~-~~~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~  158 (471)
T PRK10504         85 FTLGS-LFCA-LS--G-TLNELLLARVLQGVGGAMMVP-VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLV  158 (471)
T ss_pred             HHHHH-HHHH-Hh--C-CHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            22111 1111 21  2 234456667788888777777 67888889999999999999999999999999999999998


Q ss_pred             Hhh
Q 017535          234 QHV  236 (370)
Q Consensus       234 ~~~  236 (370)
                      +..
T Consensus       159 ~~~  161 (471)
T PRK10504        159 EYA  161 (471)
T ss_pred             hhc
Confidence            875

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.40  E-value=1.3e-11  Score=110.59  Aligned_cols=131  Identities=12%  Similarity=0.093  Sum_probs=100.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.       ...+..+..........  .  + ..
T Consensus        26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-------~~~~~~~~~~~~~~~~~--~--~-~~   93 (385)
T TIGR00710        26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-------LLLGLFIFALSSLGLAL--S--N-NI   93 (385)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-------HHHHHHHHHHHHHHHHH--H--c-cH
Confidence            35566668899999999999999999999999999999999999865       33333222222222111  1  1 23


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus        94 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~  156 (385)
T TIGR00710        94 ETLLVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL  156 (385)
T ss_pred             HHHHHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4456667777877776666 67888999999999999999999999999999999999888865

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK03545 putative arabinose transporter; Provisional

Probab=99.40  E-value=1.8e-11  Score=109.96  Aligned_cols=131  Identities=7%  Similarity=-0.017  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|.++.+.++..+.+.++..++.++.|++.||+|||+.       +..+..+.........  ..  + +.
T Consensus        30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~--~~--~-~~   97 (390)
T PRK03545         30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL-------LIGLFVLFIASHVLSA--LA--W-NF   97 (390)
T ss_pred             cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-------HHHHHHHHHHHHHHHH--Hh--c-cH
Confidence            34677778999999999999999999999999999999999999976       3333332222222211  11  2 24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.+..|+++|+.+.|+......++..++|.+.+.+.+..
T Consensus        98 ~~l~~~r~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~  160 (390)
T PRK03545         98 TVLLISRIGIAFAHAIFWS-ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL  160 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence            4456666777877766666 66788899999999999999999999999999999999988775

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.40  E-value=3e-11  Score=109.13  Aligned_cols=142  Identities=13%  Similarity=0.026  Sum_probs=103.6

Q ss_pred             HHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           81 QGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      .+.+.+.......+....+ +++|++..+.+++.+.+.++..++.++.|+++||+|||+.       +..+.++..... 
T Consensus        16 ~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~-------~~~~~~~~~~~~-   87 (412)
T TIGR02332        16 LFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW-------IAGIMVLWGIAS-   87 (412)
T ss_pred             HHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH-------HHHHHHHHHHHH-
Confidence            3333344333343333345 8999999999999999999999999999999999999976       233322222111 


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      +... +.  +. .+.+.+..++.|++.+...| ....++.+.+|+++|+.+.++.+....+|..+++.+.+++.+.
T Consensus        88 ~~~~-~~--~~-~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  158 (412)
T TIGR02332        88 TATM-FA--TG-PESLYLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILAL  158 (412)
T ss_pred             HHHH-Hh--cC-HHHHHHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            1111 11  11 34466677888888887777 6677889999999999999999999999999999999988753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.39  E-value=2.9e-11  Score=104.85  Aligned_cols=149  Identities=15%  Similarity=0.111  Sum_probs=120.1

Q ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH
Q 017535           75 FQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA  154 (370)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  154 (370)
                      +.+.+..|+.+...+.....+|...+++|.|...+|.+.+.+..+..++.++...+.+|+.||+.       ++....+.
T Consensus        16 ~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-------Ll~~l~lF   88 (394)
T COG2814          16 LALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-------LLGLLALF   88 (394)
T ss_pred             HHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-------HHHHHHHH
Confidence            44555666666666766678899999999999999999999999999999999999999999976       22222222


Q ss_pred             HHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          155 IPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      . ..-+....    ..++..+.+..++.|+..|...+ ...+...+.+|+++|+++.+++.....++..+|.+++.++-|
T Consensus        89 i-~~n~l~al----Ap~f~~Ll~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~  162 (394)
T COG2814          89 I-VSNLLSAL----APSFAVLLLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQ  162 (394)
T ss_pred             H-HHHHHHHH----hccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            1 22121111    22356688889999998888888 889999999999999999999999999999999999999999


Q ss_pred             hh
Q 017535          235 HV  236 (370)
Q Consensus       235 ~~  236 (370)
                      ..
T Consensus       163 ~~  164 (394)
T COG2814         163 LF  164 (394)
T ss_pred             Hh
Confidence            88

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.37  E-value=3.9e-11  Score=107.87  Aligned_cols=131  Identities=12%  Similarity=0.098  Sum_probs=98.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.       +.++..+....... .. ..  +. .
T Consensus        24 ~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-------l~~~~~~~~i~~~~-~~-~~--~~-~   91 (392)
T PRK10473         24 VGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-------AIPGAALFIIASLL-CS-LA--ET-S   91 (392)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-------HHHHHHHHHHHHHH-HH-Hh--Cc-H
Confidence            56777778899999999999999999999999999999999999865       33333222222211 11 11  12 3


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus        92 ~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473         92 SLFLAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            3345556667776666555 56788899999999999999999999999999999988877654

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.37  E-value=2.7e-11  Score=112.02  Aligned_cols=143  Identities=15%  Similarity=0.074  Sum_probs=104.1

Q ss_pred             HHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           81 QGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      ..+....-.+.. +-+|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+.       +.++..+..+...
T Consensus        14 ~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-------l~~~~~~~~~~~~   86 (495)
T PRK14995         14 VYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-------LMLGGTLFGLASL   86 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHH
Confidence            333333333334 45788889999999999999999999999999999999999999976       3333333322222


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...  ..  + +.+.+.+..++.|++.+...| .....+.+.+ |+++|+++.|+......+|..+||.++|++.+..
T Consensus        87 ~~~--~a--~-~~~~li~~r~l~G~g~~~~~~-~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~  158 (495)
T PRK14995         87 AAA--FS--P-TASWLIATRALLAIGAAMIVP-ATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHF  158 (495)
T ss_pred             HHH--Hc--C-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            211  11  2 244566677788888777666 4455555554 6788999999999999999999999999999876

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.37  E-value=3.5e-11  Score=108.01  Aligned_cols=135  Identities=13%  Similarity=0.099  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           89 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        89 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      +.....+|.+.+++|+++.+.++..+...++..++.++.|+++||+|||+.       ...+..+..... +... ..  
T Consensus        37 ~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~-------~~~~~~~~~~~~-~~~~-~~--  105 (394)
T PRK10213         37 FLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV-------VILFAVLLTLSC-LLVS-FA--  105 (394)
T ss_pred             HHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-------HHHHHHHHHHHH-HHHH-HH--
Confidence            333346677778999999999999999999999999999999999999975       333333332222 2211 11  


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       ...+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.....+++..++|.+.+.+.+..
T Consensus       106 -~~~~~l~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~  171 (394)
T PRK10213        106 -NSFSLLLIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELI  171 (394)
T ss_pred             -ChHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence             2244566777888888777777 77888899999999999999999999999999999999998875

>PRK03699 putative transporter; Provisional

Probab=99.37  E-value=1.3e-10  Score=104.47  Aligned_cols=130  Identities=11%  Similarity=0.104  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|++..+.+++.+...++..++.++.|++.||+|+|+.       +..+..+....... .. ..   ...
T Consensus        28 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~-------~~~~~~~~~i~~~l-~~-~~---~~~   95 (394)
T PRK03699         28 MVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ-------LIFGFALMILAVAG-LM-FS---HSL   95 (394)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHH-HH-Hc---chH
Confidence            56777778899999999999999999999999999999999999975       33332222221111 11 11   224


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+++.++|.+.+.+.+.
T Consensus        96 ~~~~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  157 (394)
T PRK03699         96 ALFSIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR  157 (394)
T ss_pred             HHHHHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4456667788887777776 6788888999988999999999888889999999998887764

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.36  E-value=9.1e-11  Score=105.24  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=105.0

Q ss_pred             hccchHHHHHHHHHhhhhhhHHHHHH-HHHHHH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           69 VIKIPSFQIIVAQGVTGSFPWSALSF-AAMWLE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      ...+|.++.....+..++..+....- .+.+-+ ++|+|..+.+++.++..+++.++++..|++.||+|.|+.       
T Consensus        30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-------  102 (462)
T PRK15034         30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-------  102 (462)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------
Confidence            33456666666666666666655543 344444 799999999999999999999999999999999999976       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      ..++..+..+..........+...+...+.++.++.|++ +...+ .....+.+.+|+++||++.|+....+++|..+++
T Consensus       103 ~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        103 TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            233323222222211111111112355677777788876 44555 6678888899999999999999777777776665


Q ss_pred             HHHHHH
Q 017535          227 PVVGIL  232 (370)
Q Consensus       227 ~~~g~l  232 (370)
                      .+...+
T Consensus       181 ~l~p~~  186 (462)
T PRK15034        181 LVAPLV  186 (462)
T ss_pred             HHHHHH
Confidence            555443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.36  E-value=2.1e-10  Score=105.59  Aligned_cols=129  Identities=9%  Similarity=0.047  Sum_probs=90.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      .+.|.+.+++|++..+.+++.+...++..++.++.|+++||+|+|+.       ...+.++..+.... .. ..  .. .
T Consensus        57 ~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-------~~~~~~~~~~~~~~-~~-~~--~s-~  124 (476)
T PLN00028         57 PLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-------SAFLLMLTAPAVFC-MS-LV--SS-A  124 (476)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------HHHHHHHHHHHHHH-HH-Hh--cC-H
Confidence            34556668999999999999888899999999999999999999965       22222222211111 11 11  12 3


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ..+.+..++.|++.+...+  ...++.+.+|+++||.+.|+.+...++|+.+++.+.+.+...
T Consensus       125 ~~l~~~r~l~G~~~~~~~~--~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~  185 (476)
T PLN00028        125 TGFIAVRFFIGFSLATFVS--CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHHHHHHhhHH--HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556677776654333  345678889999999999999998899998888877766554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.35  E-value=4.6e-11  Score=106.92  Aligned_cols=135  Identities=11%  Similarity=0.075  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           89 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        89 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      +.....+|.+.+++|++..+.+++.+...++..++.++.|++.||+|+|+.       ..++..+..... +... ..  
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~-~l~~-~~--   88 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-------LLFLVALCVIGN-AMFT-LS--   88 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-------HHHHHHHHHHHH-HHHH-Hh--
Confidence            444456777778999999999999999999999999999999999999876       333333322222 2221 11  


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      + +.+.+.+..++.|++.+...+ ...+.+.+..|+++|+.+.++......++..++|.+.+++.+..
T Consensus        89 ~-~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  154 (382)
T PRK10091         89 S-SYLMLAIGRLVSGFPHGAFFG-VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF  154 (382)
T ss_pred             C-cHHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc
Confidence            2 244566677788887766555 55677788888888999999999999999999999999887765

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.35  E-value=1.1e-10  Score=106.77  Aligned_cols=126  Identities=16%  Similarity=0.197  Sum_probs=88.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      .+|.+.++ |++..+.++..+...++..++.++.|+++||+|+|+.       +.++.++.......... .+......+
T Consensus        51 ~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-------l~~~~~~~~i~~~~~~~-~~~~~~~~~  121 (452)
T PRK11273         51 AMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILAAAVMLFMGF-VPWATSSIA  121 (452)
T ss_pred             hhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-------HHHHHHHHHHHHHHHHh-hhcccccHH
Confidence            44544465 9999999999999999999999999999999999976       33333332222221111 111122244


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .+.+..++.|++.+...+ .....+.+.+|+++|+++.|+.+....+|+.+.+.+.
T Consensus       122 ~~~~~~~l~gi~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~  176 (452)
T PRK11273        122 VMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF  176 (452)
T ss_pred             HHHHHHHHHHHHHhccch-HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            456666777887777666 5567778888999999999999999998875544443

>TIGR00897 2A0118 polyol permease family

Probab=99.35  E-value=4.1e-11  Score=107.98  Aligned_cols=150  Identities=13%  Similarity=0.013  Sum_probs=102.8

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHH
Q 017535           78 IVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL  157 (370)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~  157 (370)
                      .+..++.....+....+++.+++++|.++.+.+++.+.+.++..++.++.|++.||+|||+.       ...+..+....
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-------l~~~~~~~~~~   91 (402)
T TIGR00897        19 YIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-------MMIGLLLWCVG   91 (402)
T ss_pred             HHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-------HHHHHHHHHHH
Confidence            33333333333444467788888899999999999999999999999999999999999976       33333322222


Q ss_pred             HHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh-chhhHHHHHHHHhh
Q 017535          158 AALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQHV  236 (370)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~g~l~~~~  236 (370)
                      ...... .......++.+.+..++.|++.+...+ ...+.+.+.+|+++|++++|+.+...++|. .++|.+.+++.+..
T Consensus        92 ~~~~~~-~~~~~~~~~~l~~~~~i~G~g~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897        92 HAAFIV-FGLGHANYPLILLFYGIRGLGYPLFAY-SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HHHHHH-HhccCccHHHHHHHHHHHHcchHHHHh-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            111111 111111234445556666776665555 455667788899999999999999999986 57888888887765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.35  E-value=3.7e-11  Score=107.80  Aligned_cols=148  Identities=18%  Similarity=0.136  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHH
Q 017535           73 PSFQIIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  151 (370)
Q Consensus        73 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~  151 (370)
                      |.++.++...++.... .......+.+.++++.++.+.+++.+.+.+...+..++.|+++||++||+.       +.++.
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-------l~~~~   75 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-------MFIAN   75 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-------hHHHH
Confidence            4444444444444433 222334455568889999999999999999999999999999999999987       33333


Q ss_pred             HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHH
Q 017535          152 LSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  231 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  231 (370)
                      .+...........    .. .   .+..++.|++.+...| ...+++.+.+|+++|++++|+.+....++..+||.++|+
T Consensus        76 ~~~~~~~~~~~~~----~~-~---~~~r~l~G~~~a~~~p-a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         76 GIKLLGCLLMLFG----IH-P---LLAYGLVGIGAAAYSP-AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHHH----HH-H---HHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3222111111111    11 1   3445677888888888 889999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 017535          232 LAQHV  236 (370)
Q Consensus       232 l~~~~  236 (370)
                      +.+..
T Consensus       147 l~~~~  151 (393)
T PRK11195        147 LADPH  151 (393)
T ss_pred             HHHHH
Confidence            98853

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.35  E-value=5e-10  Score=102.82  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=98.2

Q ss_pred             hhccch-HHHHHH-HHHhhhhhhHHHHHHHHHHH-HHhCCCHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCc
Q 017535           68 SVIKIP-SFQIIV-AQGVTGSFPWSALSFAAMWL-ELTGFSHE---KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNS  141 (370)
Q Consensus        68 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~g~s~~---~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  141 (370)
                      +++|++ .+...+ ..++.+...+....+.|... ..++-++.   ..+++..+..++..+|.++.|.+..++++-|.  
T Consensus       304 ~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw--  381 (599)
T PF06609_consen  304 RLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKW--  381 (599)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhH--
Confidence            577774 455543 34444444555556666665 56665543   56777778888889999999999988765443  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHh
Q 017535          142 GRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESIL  221 (370)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  221 (370)
                          .++++..+.......+...-+++.. .  .....++.|++.++... +.....+-.+|++..|+++|+..+++.+|
T Consensus       382 ----~li~~~~~~ta~~Gama~~~~~n~~-~--~i~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~G  453 (599)
T PF06609_consen  382 ----QLIFGSVLMTAFCGAMAAVRPDNKN-A--AIAFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIG  453 (599)
T ss_pred             ----HHHHHHHHHHHHHHHHHHccCCCcc-h--HHHHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHh
Confidence                1223333332222222222222222 2  23344555666565554 45666677789999999999999999999


Q ss_pred             hchhhHHHHHHHH
Q 017535          222 SSFAPPVVGILAQ  234 (370)
Q Consensus       222 ~~~~~~~~g~l~~  234 (370)
                      +.+|..+...+..
T Consensus       454 GsIg~aIy~~I~~  466 (599)
T PF06609_consen  454 GSIGYAIYNAIFT  466 (599)
T ss_pred             hHHHHHHHHHHHH
Confidence            9999888766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.34  E-value=1.7e-11  Score=113.40  Aligned_cols=134  Identities=13%  Similarity=0.128  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+++|.+..+.+++.+.+.++.+++.++.|+++||+|||+.       ..++..+....... . ...  + ..
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~-~-~~~--~-~~   90 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-------FLISTFAFTLGSLL-C-GVA--P-NL   90 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-------HHHHHHHHHHHHHH-H-hCc--C-CH
Confidence            45677778999999999999999999999999999999999999975       33333332222211 1 121  2 24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      ..+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++......+|..++|.+.|++.+.. +|.
T Consensus        91 ~~l~~~~~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~  156 (485)
T TIGR00711        91 ELMIIFRVIQGFGGGPLIP-LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENY-HWR  156 (485)
T ss_pred             HHHHHHHHHHHhhhhhHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCc-Cce
Confidence            4566777888888877777 77889999999999999999999999999999999999998875 544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.34  E-value=6.8e-11  Score=106.83  Aligned_cols=131  Identities=13%  Similarity=0.042  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+++|+++.+.+++.+...++..++.++.|+++||+|+|+.       ..++..+....... .. ..  . +.
T Consensus        36 ~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~-~~-~~--~-~~  103 (406)
T PRK11551         36 VAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRI-------LIVSVALFGLFSLA-TA-QA--W-DF  103 (406)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHHHH-HH-Hh--c-cH
Confidence            44566668899999999999999999999999999999999999986       33333222222111 11 11  2 24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|+++|++++++.+....+|+.+++.+.+.+.+..
T Consensus       104 ~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  166 (406)
T PRK11551        104 PSLLVARLLTGVGLGGALP-NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA  166 (406)
T ss_pred             HHHHHHHHHHHhhHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            4456677788887777666 67888999999999999999999999999999988877665543

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.34  E-value=9.3e-12  Score=100.83  Aligned_cols=154  Identities=18%  Similarity=0.151  Sum_probs=108.5

Q ss_pred             hHHHHHHHHH-hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHH
Q 017535           73 PSFQIIVAQG-VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  150 (370)
Q Consensus        73 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~  150 (370)
                      |.+|.+.... ++....+.+++..|.++ +.+|+|+..++.+.+.....+.+.+++.|.++||.|++..       .+.+
T Consensus       264 ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~-------wv~~  336 (459)
T KOG4686|consen  264 PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLW-------WVAS  336 (459)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceeh-------hHHH
Confidence            4455544444 33334455667788888 8899999999999999988999999999999999999865       2322


Q ss_pred             HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          151 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      ..+.....-..+. +...+     -...+.++|+....... ..+.+++.++|.++.|+++|....+.++|-++.|++.|
T Consensus       337 a~~~tl~~H~~l~-Ft~ls-----Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  337 ACILTLLGHSGLF-FTFLS-----PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             HHHHHHHHhhhHH-hhhcc-----HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            2222222211111 11111     12333445555444433 46778888999999999999999999999999999999


Q ss_pred             HHHHhhcCCC
Q 017535          231 ILAQHVYGFK  240 (370)
Q Consensus       231 ~l~~~~~g~~  240 (370)
                      .+.|..++|.
T Consensus       410 ~i~d~~g~y~  419 (459)
T KOG4686|consen  410 FIADGDGSYD  419 (459)
T ss_pred             eeecCCCchh
Confidence            9999886665

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.33  E-value=1.5e-10  Score=104.61  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=99.6

Q ss_pred             HHHHHHhhhhhhHH-HHHHHHHHHHHhCCCHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHH
Q 017535           77 IIVAQGVTGSFPWS-ALSFAAMWLELTGFSHEK-----TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  150 (370)
Q Consensus        77 ~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~~-----~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~  150 (370)
                      .++...++....+. ...++|.+++++|.+..+     .+++.++..+...++.++.|+++||++||+.       +..+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~   90 (408)
T PRK09874         18 VAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-------LLRS   90 (408)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-------HHHH
Confidence            33333333344433 336788888888888554     4788888899999999999999999999865       2332


Q ss_pred             HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          151 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      .......... +. ..  . ..+.+.+..++.|++.+. .+ ....++.+..|+++|+.+.++.+....++..++|.+.+
T Consensus        91 ~~~~~~~~~~-~~-~~--~-~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  163 (408)
T PRK09874         91 ALGMGIVMVL-MG-LA--Q-NIWQFLILRALLGLLGGF-VP-NANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGG  163 (408)
T ss_pred             HHHHHHHHHH-HH-HH--h-hHHHHHHHHHHHHHhhhh-HH-hHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222221111 11 11  1 233455556666765443 45 55677788899999999999999999999999999999


Q ss_pred             HHHHhh
Q 017535          231 ILAQHV  236 (370)
Q Consensus       231 ~l~~~~  236 (370)
                      .+.+..
T Consensus       164 ~l~~~~  169 (408)
T PRK09874        164 LLADSY  169 (408)
T ss_pred             HHHHHh
Confidence            988865

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.33  E-value=5.3e-11  Score=105.95  Aligned_cols=147  Identities=14%  Similarity=0.085  Sum_probs=102.4

Q ss_pred             HHHHHHHhhhhhhH-HHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHH
Q 017535           76 QIIVAQGVTGSFPW-SALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS  153 (370)
Q Consensus        76 ~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~  153 (370)
                      +..+..++.....+ ....+.|.++ +++|+++.+.+++.+...++.+++.++.|+++||+|+|+.       ..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~   76 (366)
T TIGR00886         4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-------TTLSLLL   76 (366)
T ss_pred             HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-------HHHHHHH
Confidence            33344444444443 3336778656 8999999999999999999999999999999999999875       3333333


Q ss_pred             HHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          154 AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      .......... .   +...+.+.+..++.|++.+. .+ ...+++.+.+|+++|+.+.++.....++|..+++.+.+.+.
T Consensus        77 ~~i~~~~~~~-~---~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~  150 (366)
T TIGR00886        77 LAIPCLWAGL-A---VQSYSVLLLLRLFIGIAGGS-FA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPII  150 (366)
T ss_pred             HHHHHHHHHH-H---hhhHHHHHHHHHHHHHhchh-hH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3222222111 1   10234455566677776443 34 45778889999999999999999888899888888887776


Q ss_pred             Hh
Q 017535          234 QH  235 (370)
Q Consensus       234 ~~  235 (370)
                      ..
T Consensus       151 ~~  152 (366)
T TIGR00886       151 GS  152 (366)
T ss_pred             HH
Confidence            64

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.33  E-value=6.9e-11  Score=104.72  Aligned_cols=130  Identities=17%  Similarity=-0.023  Sum_probs=97.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|++..+.+++.+.+.++..++.+..|+++||+|||+.        .+.............. ..  . ..
T Consensus        12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~--------~~~~~~~~~~~~~~~~-~~--~-~~   79 (368)
T TIGR00903        12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF--------LFGSLATFAAAAGRLL-DP--F-NY   79 (368)
T ss_pred             hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HHHHHHHHHHHHHHHH-Hh--c-cH
Confidence            45577778999999999999999999999999999999999997754        2222221111111111 11  1 35


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+.+..++.|++.+.. + .....+.+.+|+++|+++.++.+....+|..+++.+.+++.+..
T Consensus        80 ~~l~~~R~l~G~g~~~~-~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~  141 (368)
T TIGR00903        80 EWLLACQLLAALGQPFL-L-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAG  141 (368)
T ss_pred             HHHHHHHHHHHhHhHHH-H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            56777788888887753 3 34556688899999999999999999999999999999988765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.33  E-value=4.8e-11  Score=106.69  Aligned_cols=131  Identities=16%  Similarity=0.149  Sum_probs=101.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|+++.+.+++.+...++..++.++.|+++||+|||+.       +..+..+..........  .  + ..
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~i~~~~~~~--~--~-~~   79 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-------ILGGTLVFALAAVACAL--A--Q-TI   79 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-------HHHHHHHHHHHHHHHHH--H--c-cH
Confidence            45677778899999999999999999999999999999999998865       33333332222222211  1  1 23


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.+..|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus        80 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  142 (377)
T PRK11102         80 DQLIYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF  142 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            4456667777887776666 66788899999999999999999999999999999999988865

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.33  E-value=1.2e-11  Score=109.40  Aligned_cols=131  Identities=21%  Similarity=0.249  Sum_probs=102.1

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCh
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  171 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (370)
                      ..+|.++ +++|.+..+.+++.+...++..++.++.|+++||+|+|+.       ..++.++......+..+.    .. 
T Consensus        17 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~~----~~-   84 (352)
T PF07690_consen   17 PALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-------LIIGLLLFALGSLLLAFA----SN-   84 (352)
T ss_dssp             HHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-------HHHHHHHHHHHHHHHHHH----CC-
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-------EeehhhhhhhHHHHhhhh----hh-
Confidence            4556445 7899999999999999999999999999999999999975       333333333221222211    22 


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+.+.+..
T Consensus        85 ~~~~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  148 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF  148 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred             HHHHhhhccccccccccccc-cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence            33677778888888877777 78999999999999999999999999999999999999988665

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.33  E-value=1.4e-10  Score=104.35  Aligned_cols=131  Identities=13%  Similarity=0.062  Sum_probs=96.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.       +.++..+..........  .  + ..
T Consensus        29 p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-------~~~~~~~~~~~~~~~~~--~--~-~~   96 (394)
T PRK11652         29 PAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-------ILVGMSIFILGTLVALF--A--H-SL   96 (394)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-------HHHHHHHHHHHHHHHHH--H--c-cH
Confidence            34667778999999999999999999999999999999999999875       33333322222222111  1  1 23


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ....+..+..++++++.+.++.+....++..++|.+.+.+.+..
T Consensus        97 ~~l~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  159 (394)
T PRK11652         97 TVLIAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLF  159 (394)
T ss_pred             HHHHHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4455666777776655444 45666778888888999999999999999999999999887765

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.32  E-value=6.5e-11  Score=107.69  Aligned_cols=130  Identities=18%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      ..|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.       +.++.++..+.......  .   ...+
T Consensus        40 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~--~---~~~~  107 (426)
T PRK12307         40 IMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-------MMWSIVAYSVGTGLSGL--A---SGVI  107 (426)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------HHHHHHHHHHHHHHHHH--H---hHHH
Confidence            3455558899999999999999999999999999999999999976       33333333222222111  1   1244


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+..++.|++.+...+ ....++.+..|+++|+++.++......+|..+++.+.+.+.+..
T Consensus       108 ~l~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307        108 MLTLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             HHHHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            566777888888777676 67888899999999999999999999999999988888776654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.32  E-value=1.2e-09  Score=95.92  Aligned_cols=162  Identities=11%  Similarity=0.156  Sum_probs=110.6

Q ss_pred             hHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 017535           62 LIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELT----GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSA  136 (370)
Q Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  136 (370)
                      ..++..+++|+|++|.+.+..+.....|... ...|.|+..+    +.+....|++.+...+..++...+..++.+|+|.
T Consensus       209 ~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~  288 (412)
T PF01306_consen  209 SLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGA  288 (412)
T ss_dssp             -HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             cHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            3566778999999888777666655555554 4567776443    3344667888888888889999999999999999


Q ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHH-H
Q 017535          137 RFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD-R  215 (370)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~  215 (370)
                      |+.       ++++..+. .+= +....+..+   ++.+.+.-.+-++-...... ...-++.+.+|++..++...+. +
T Consensus       289 k~~-------Lllag~i~-~iR-i~~~~~~~~---~~~i~~~klLH~~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~  355 (412)
T PF01306_consen  289 KNL-------LLLAGVIM-AIR-IIGSGFATN---PWVISLIKLLHALEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQ  355 (412)
T ss_dssp             HHH-------HHHHHHHH-HHH-HHHHHT--S---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHT
T ss_pred             HhH-------HHHHHHHH-HHH-HHHHhhhcc---hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHH
Confidence            975       23322222 121 222222222   34455666666665555444 5578888999999999999885 6


Q ss_pred             HHHHHhhchhhHHHHHHHHhh
Q 017535          216 SFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       216 ~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..+++..+.+.+.|.+.|+.
T Consensus       356 ~~~~~~~~i~s~~~G~lyd~~  376 (412)
T PF01306_consen  356 FAKQIGIIILSPLAGYLYDRI  376 (412)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHhhHhhc
Confidence            778899999999999999998

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.32  E-value=4.3e-11  Score=110.04  Aligned_cols=134  Identities=12%  Similarity=0.027  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH-HHHHHhCCCCCCh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA-ALLLLVLPDDPST  171 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  171 (370)
                      ...|.+.+++|++..+.|++.+.+.++..++.++.|+++||+|+|+.       +.++.++..... ...+.... ....
T Consensus        50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-------l~~~~~~~~~~~~~~~~~~~~-~~~~  121 (467)
T PRK09556         50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF-------LPFLLILSAICMLGFGASLGS-GSVS  121 (467)
T ss_pred             hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch-------HHHHHHHHHHHHHHHHHHHhc-ccch
Confidence            34676668999999999999999999999999999999999999986       232222221111 11111111 1223


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .+.+.+..++.|++.+...| ...+++.+.+|+++||.+.|+......+|.++++.+..++.+.
T Consensus       122 ~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        122 LGLMIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            55667777888888887777 7788999999999999999999999999999998887776654

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.31  E-value=2.2e-10  Score=101.13  Aligned_cols=133  Identities=20%  Similarity=0.195  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           91 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        91 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      .....|.+.++.|.+..+.+++.+...++..++.++.|+++||+|||+.       ..++..+..........  .   .
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-------~~~~~~~~~~~~~~~~~--~---~   85 (352)
T cd06174          18 LSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-------LLLGLLLFALGSLLLAF--A---S   85 (352)
T ss_pred             hHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-------hHHHHHHHHHHHHHHHH--h---c
Confidence            3356788888889999999999999999999999999999999999986       34433333322222221  1   2


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+.+.+..++.|++.+...+ ...+++.+..|+++|++..++.+....+|..++|.+.+.+.+..
T Consensus        86 ~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          86 SLWLLLVGRFLLGLGGGALYP-AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             cHHHHHHHHHHHHcccccccH-hHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            244566677788887777777 78899999999999999999999999999999999999998875

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK11043 putative transporter; Provisional

Probab=99.31  E-value=2.9e-10  Score=102.55  Aligned_cols=128  Identities=15%  Similarity=0.075  Sum_probs=93.7

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHH
Q 017535           96 AMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMH  175 (370)
Q Consensus        96 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (370)
                      |.+.+++|.++.+.+++.+...++..++.++.|+++||++||+.       +..+..+....... .. ..  +. .+.+
T Consensus        30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~-~~-~~--~~-~~~l   97 (401)
T PRK11043         30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-------LLAGLSLFALGSLG-ML-WV--ES-AAQL   97 (401)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-------HHHHHHHHHHHHHH-HH-Hh--cC-HHHH
Confidence            33448899999999999999999999999999999999999975       33332222211111 11 11  22 3345


Q ss_pred             HHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          176 GLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+..++.|++.+...+ ...+++.+.+|+++++...+..+....++..++|.+.+++.+..
T Consensus        98 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  157 (401)
T PRK11043         98 LVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHF  157 (401)
T ss_pred             HHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5556666766555444 45677888899888889999988888999999999999998875

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.30  E-value=7.9e-12  Score=111.63  Aligned_cols=130  Identities=15%  Similarity=0.177  Sum_probs=98.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.       ..++..+......+...  .  . ..
T Consensus        16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~--~--~-~~   83 (379)
T TIGR00881        16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-------LPIGLILCAIVNLFFGF--S--T-SL   83 (379)
T ss_pred             hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-------hHHHHHHHHHHHHHHHH--h--h-hH
Confidence            34565558899999999999999999999999999999999999976       33333332222222211  1  1 24


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhH-HHHHHHHh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP-VVGILAQH  235 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~g~l~~~  235 (370)
                      +.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|. +.+.+.+.
T Consensus        84 ~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881        84 WVMAALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             HHHHHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc
Confidence            4566677788888887777 78889999999999999999999999999999995 55544443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.30  E-value=5.7e-11  Score=107.78  Aligned_cols=159  Identities=18%  Similarity=0.206  Sum_probs=94.4

Q ss_pred             hhccchHHHHHHHHHhhhhhhHH-HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535           68 SVIKIPSFQIIVAQGVTGSFPWS-ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII  145 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  145 (370)
                      ..+++|.++.+....++....++ ...++|.|+ +++|+++.+.|++.+...++..++.++.|+++||+|+|+.      
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~------   78 (420)
T PRK09528          5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKH------   78 (420)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH------
Confidence            35667777776666655555544 457899999 6699999999999999999999999999999999999876      


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC--CCchhHHHHHHHHHHHHhhc
Q 017535          146 LAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP--EKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~  223 (370)
                       ..++..+........+.... ............+..++..+.... .......+..+  .+.++..+|......++|..
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~  155 (420)
T PRK09528         79 -LLWIISGLLVLFGPFFIYVF-APLLQYNILLGAIVGGIYLGFGFL-AGAGAIEAYIERVSRRSGFEYGRARMWGSLGWA  155 (420)
T ss_pred             -HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhc-cchhhhhhHHHHHHhhccccchhhHHhhhHHHH
Confidence             22221111111110110000 000000011111111222221111 11112222211  23467788888899999999


Q ss_pred             hhhHHHHHHHHh
Q 017535          224 FAPPVVGILAQH  235 (370)
Q Consensus       224 ~~~~~~g~l~~~  235 (370)
                      ++|.+.|.+.+.
T Consensus       156 i~~~~~g~l~~~  167 (420)
T PRK09528        156 LCAFIAGILFNI  167 (420)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.30  E-value=1.3e-10  Score=104.07  Aligned_cols=149  Identities=11%  Similarity=0.031  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 017535           74 SFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL  152 (370)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  152 (370)
                      .++.++...+......+.. .++|.+.+++|.|..++|++.+...++..++.++.|+++||+|+|+.       ..++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~-------~~~~~~   79 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS-------YYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-------HHHHHH
Confidence            3444444444444444444 78899998899999999999999999999999999999999999976       333333


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          153 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      +....... .. ..  + +.+.+.+..++.|++.+...+ ...+.+.+..++++|+++.+..+...++|..+||.+.+.+
T Consensus        80 ~~~~~~~~-~~-~~--~-~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l  153 (381)
T PRK03633         80 IFAAGCAG-LG-LM--V-GFWSWLAWRFVAGIGCAMIWV-VVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKV  153 (381)
T ss_pred             HHHHHHHH-HH-Hh--c-cHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            32222111 11 11  2 244556667788887776655 4455666778888899999999999999999999999887


Q ss_pred             HHh
Q 017535          233 AQH  235 (370)
Q Consensus       233 ~~~  235 (370)
                      .+.
T Consensus       154 ~~~  156 (381)
T PRK03633        154 STE  156 (381)
T ss_pred             ccc
Confidence            664

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.29  E-value=2.1e-10  Score=98.62  Aligned_cols=152  Identities=17%  Similarity=0.142  Sum_probs=111.7

Q ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHH
Q 017535           72 IPSFQIIVAQGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  150 (370)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~  150 (370)
                      .|+++.....+..++..+....-+...+ +++|+|+.|.+++.++..+.+.+.+++.|++.||+|.|+.       ..++
T Consensus        13 ~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~-------~~~s   85 (417)
T COG2223          13 RRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKW-------TILS   85 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHH-------HHHH
Confidence            3446666666666666666665555555 8999999999999999999999999999999999999976       3333


Q ss_pred             HHH-HHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          151 SLS-AIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       151 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .++ .+++....+.  ...+. .+.++++-++.|++.+. .. ...++++..+|++++|.+.|++. .+|+|..+...+.
T Consensus        86 ~~l~~IP~~~~~~a--~~~~~-~~~ll~~gll~G~~Gas-Fa-v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~  159 (417)
T COG2223          86 MLLLLIPCLGLAFA--VTYPS-TWQLLVIGLLLGLAGAS-FA-VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVA  159 (417)
T ss_pred             HHHHHHHHHHHHHH--ccCCc-hHHHHHHHHHHhcccce-eh-cccccccccCChhhhhHHHHHhc-cccccHHHHHHHH
Confidence            333 3333333322  22222 24566666667775443 33 55788899999999999999999 9999999988888


Q ss_pred             HHHHHhh
Q 017535          230 GILAQHV  236 (370)
Q Consensus       230 g~l~~~~  236 (370)
                      .++....
T Consensus       160 P~v~~~~  166 (417)
T COG2223         160 PLVAVAF  166 (417)
T ss_pred             HHHHHHH
Confidence            8888776

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.29  E-value=4.6e-10  Score=100.86  Aligned_cols=130  Identities=18%  Similarity=0.096  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|+|..+.+++.+.+.++..++.++.|+++||+|+|+.       ...+..+.........  +.  +. .
T Consensus        30 ~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~-------l~~~~~l~~~~~~~~~--~a--~~-~   97 (393)
T PRK09705         30 PLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS-------VAISLLLIAVGALMRE--LY--PQ-S   97 (393)
T ss_pred             hhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH-------HHHHHHHHHHHHHHHH--HC--cc-h
Confidence            56677778999999999999999999999999999999999999986       3444333332222221  22  22 3


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+.+.+.+| ++|+.+.++......+|..+++.+.+++.++.
T Consensus        98 ~~ll~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~  159 (393)
T PRK09705         98 ALLLSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS  159 (393)
T ss_pred             HHHHHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456677888888887776 66778888776 67999999999999999999999999888764

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.28  E-value=1.5e-10  Score=107.55  Aligned_cols=146  Identities=17%  Similarity=0.070  Sum_probs=106.1

Q ss_pred             HHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           78 IVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      +.+..+.....+... ...|.+.+++|.+..+.+++.+...++.+++.++.|+++||+|||+.       ..++.++...
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~   97 (496)
T PRK03893         25 AWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-------MVISIVLFSV   97 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHH
Confidence            333333333343344 34566668899999999999999999999999999999999999875       3333322222


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          157 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .......  .   .+.+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+.+.+..
T Consensus        98 ~~~~~~~--~---~~~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893         98 GTLACGF--A---PGYWTLFIARLVIGMGMAGEYG-SSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHH--H---hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            2211111  1   1244566677788887776666 66788899999999999999999999999999999999888754

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.28  E-value=4.7e-10  Score=101.07  Aligned_cols=148  Identities=13%  Similarity=0.041  Sum_probs=107.7

Q ss_pred             HHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           78 IVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      +...++.....+... ...|.+.+++|++..+.+++.+...++..+++++.|++.||+|+|+.       ..++..+...
T Consensus         8 ~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-------~~~g~~l~~~   80 (410)
T TIGR00885         8 ITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-------ILLGLFLYAL   80 (410)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-------HHHHHHHHHH
Confidence            333333333334444 56677778999999999999999999999999999999999999976       3433333322


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          157 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .. ..+..... ...++.+.+..++.|++.+...+ ..++++.+..|++++++..++.+.+.++|..++|.+.+.+...
T Consensus        81 g~-~l~~~~~~-~~~~~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885        81 GA-FLFWPAAE-IMNYTLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HH-HHHHHHHh-hccHHHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            22 22211111 12245566677788888887777 6778888888989999999999999999999999999988754

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.28  E-value=1.1e-10  Score=100.94  Aligned_cols=212  Identities=19%  Similarity=0.132  Sum_probs=137.2

Q ss_pred             ccCchh--HHHHHHHHHHHHHHHHHHhcCC-CCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhh
Q 017535            9 IPGWRI--SFHIVGLISVVVGTLVRLFAND-PHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTG   85 (370)
Q Consensus         9 ~~gWr~--~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (370)
                      ...|-.  .|+..+.++.+..++..+..++ |+.++...+...+  +       .+..+.+++.++|++|.+.......+
T Consensus       208 ~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~--~-------~~f~~si~~~~~n~~F~il~~~ygi~  278 (480)
T KOG2563|consen  208 DNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ--D-------ASFPKSIKSCFKNRQFIILAICYGIG  278 (480)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh--c-------CcHHHHHHHHHcCccHHHHHHHHhhh
Confidence            345655  3555555554444444444444 4433332221111  1       34677888999999977765555444


Q ss_pred             hhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           86 SFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        86 ~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      ... ++..+.+..-+...|++...+|.+.....++++++++++|.+.||.++-+.   .+   .+.....+.. .+.+..
T Consensus       279 ~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~---~~---~v~~~~~~v~-~~~l~~  351 (480)
T KOG2563|consen  279 LGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKL---TT---LVLYLFALVG-TLMLLT  351 (480)
T ss_pred             HHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHH---HH---HHHHHHHHHH-HHHHHH
Confidence            443 444444444455567777889999999999999999999999999766554   11   1111111111 122222


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhc
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVY  237 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  237 (370)
                      ........+++......+|++.....| +...+..|..-|...++..|+.+..+++.+.+-..+.+...+..+
T Consensus       352 ~t~~~~~~viv~~t~~~~g~~~~~~~P-ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~  423 (480)
T KOG2563|consen  352 CTLFLGDSVIVFTTCGLLGFFGTGYLP-IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG  423 (480)
T ss_pred             hhccCCceEehhhhHHHHHHhhcCCCC-cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence            222333334566667778888877788 889999999888889999999999999999998888888888764

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.27  E-value=3.1e-10  Score=102.50  Aligned_cols=130  Identities=13%  Similarity=0.060  Sum_probs=96.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhH
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPV  173 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (370)
                      .+|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.       ..++..+..........  .  + ..+
T Consensus        35 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~--~--~-~~~  102 (406)
T PRK15402         35 GMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV-------MLAGVAFFILTCLAILL--A--Q-SIE  102 (406)
T ss_pred             chHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-------HHHHHHHHHHHHHHHHH--H--c-cHH
Confidence            4555668899999999999999999999999999999999999975       33333222222222111  1  1 233


Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+..++.|++.+...+ ...+.+.+.+|++.++.+.++......++..++|.+.+.+.+..
T Consensus       103 ~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~  164 (406)
T PRK15402        103 QFTLLRFLQGIGLCFIGA-VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL  164 (406)
T ss_pred             HHHHHHHHHHhHhhhHHH-HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            455566777776665555 56778888899998999999988888888999999999888765

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.27  E-value=1.7e-10  Score=102.96  Aligned_cols=133  Identities=11%  Similarity=0.029  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           89 WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        89 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      +....+.|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.       ..++..+..........     
T Consensus        20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~-------~~~~~~~~~~~~~~~~~-----   87 (377)
T TIGR00890        20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAV-------AMLGGILYGLGFTFYAI-----   87 (377)
T ss_pred             hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccch-------hHHhHHHHHHHHHHHHH-----
Confidence            333345666668999999999999999999999999999999999999987       33333332222211111     


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ..+.+.+.+..++.|++.+...+ .....+.+..| ++|+.+.++......+|..+++++.+.+.+.
T Consensus        88 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  152 (377)
T TIGR00890        88 ADSLAALYLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL  152 (377)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence            11234455566677777766555 44556666666 5699999999998888887777676666554

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.27  E-value=2.8e-10  Score=95.80  Aligned_cols=101  Identities=19%  Similarity=0.132  Sum_probs=71.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCcc
Q 017535          116 FVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNN  195 (370)
Q Consensus       116 ~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (370)
                      ..+....|.++.+++.||+|||+.       +....++..++.+..+..  ....   ...+.++..-++....+. +.+
T Consensus       390 tslaefPGlLIt~~iverlGRKkT-------Mal~l~~f~iflfll~~c--~~rn---~~tvllf~arafisg~fq-vaY  456 (528)
T KOG0253|consen  390 TSLAEFPGLLITGVIVERLGRKKT-------MALSLILFGIFLFLLTTC--KTRN---AYTVLLFTARAFISGAFQ-VAY  456 (528)
T ss_pred             HHHhhCCchhHHHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHh--cCcc---hhHHHHHHHHHHHhchhe-EEE
Confidence            367788899999999999999987       344433333333332222  2221   133334444444444555 779


Q ss_pred             chhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          196 PIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .+..|++|...|+++.|..+.+..+|+.+.|.+.
T Consensus       457 vYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA  490 (528)
T KOG0253|consen  457 VYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA  490 (528)
T ss_pred             EecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence            9999999999999999999999999999999887

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.26  E-value=5.1e-10  Score=101.14  Aligned_cols=129  Identities=12%  Similarity=0.028  Sum_probs=96.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHH
Q 017535           95 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  174 (370)
Q Consensus        95 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (370)
                      +|.+.+++|.+..+.++..+.+.++..++.++.|+++||+|||+.       +..+..+..... +... ..  + +.+.
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-------l~~~~~~~~~~~-~~~~-~a--~-~~~~  106 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV-------LITGALIFTLAC-AATL-FT--T-SMTQ  106 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH-------HHHHHHHHHHHH-HHHH-Hc--C-CHHH
Confidence            445457899999999999999999999999999999999999976       333322222221 1111 11  2 2444


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          175 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+..++.|++.+...+ ...+++.+.+|+++++++.++.+....++..++|.+++.+.+..
T Consensus       107 l~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~  167 (413)
T PRK15403        107 FLIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV  167 (413)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            66677777877665444 45677788889988999999999999999999999999888764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.25  E-value=9e-10  Score=99.34  Aligned_cols=140  Identities=10%  Similarity=0.063  Sum_probs=96.3

Q ss_pred             hhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           86 SFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-----SARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      ...+++. .-+|.|+++.|++..+.|++......  .+..++.|+++||+     |||+.      .+.++.........
T Consensus        12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~------~l~~~~~~~~l~~~   83 (402)
T PRK11902         12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRG------WLLLTQVGLAASIA   83 (402)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchh------HHHHHHHHHHHHHH
Confidence            3344444 57899998899999999998666554  57889999999999     66654      12222222221222


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.. .+. ....+.+.+..++.++......+ ...+++.+..|+++|+.+.++......+|..+++.+.+.+.+..
T Consensus        84 ~l~~-~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~  157 (402)
T PRK11902         84 AMAF-CPP-HAALWPLAGLAVLVAFLSASQDI-VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV  157 (402)
T ss_pred             HHHh-cCc-cchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence            2121 222 22244445454555666666666 77899999999999999999999988999999999888887753

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.24  E-value=3.4e-10  Score=101.12  Aligned_cols=133  Identities=17%  Similarity=0.089  Sum_probs=90.0

Q ss_pred             HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           92 LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        92 ~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      ...+|.|+ +++|.+..+.+++.+...+...+..++.|+++||+|||+.       ..+.......+...... ..  +.
T Consensus        17 ~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~-------~~~~~~~~~~~~~~~~~-~~--~~   86 (375)
T TIGR00899        17 FPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKG-------LILFCCLLAALACLLFA-WN--RN   86 (375)
T ss_pred             hhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH-------HHHHHHHHHHHHHHHHH-hc--ch
Confidence            35678888 7899999999999999999999999999999999998875       22222221111111111 11  22


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHH--HHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSV--YAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       .+.+.+..++.+...+...| ...++..+..|++.|+.+  .+......++|..++|.+.+.+.+..
T Consensus        87 -~~~l~~~~~~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~  152 (375)
T TIGR00899        87 -YFLLLVLGVLLSSFASTANP-QLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF  152 (375)
T ss_pred             -HHHHHHHHHHHHhhhhhhHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc
Confidence             33334444555555444555 556666776776666544  57777888899999999999988765

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.24  E-value=1.3e-09  Score=100.20  Aligned_cols=163  Identities=9%  Similarity=-0.033  Sum_probs=95.3

Q ss_pred             hccchHHHHHHH--HHhhhhhhHHHH-HHHHHHHH-HhCCCH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCC
Q 017535           69 VIKIPSFQIIVA--QGVTGSFPWSAL-SFAAMWLE-LTGFSH----EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPN  140 (370)
Q Consensus        69 ~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~-~~g~s~----~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  140 (370)
                      .+|+|.+....+  .....+..+... +.++.+.+ ..+.+.    ...+.+.+...+..++..++.+++.||+++|+..
T Consensus       263 ~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~  342 (489)
T PRK10207        263 TGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKD  342 (489)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            455665443322  233333333333 45666663 232211    0123333444456667788889999999988642


Q ss_pred             chhHHHHHHHHHHHHHHHHHH----HHhC-CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHH
Q 017535          141 SGRIILAQISSLSAIPLAALL----LLVL-PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR  215 (370)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  215 (370)
                      ........++.++........    .... .+.....+.+....++.|++.+...| +..+++.+..|++.+|.++|+.+
T Consensus       343 ~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~-~g~~~~~~~aP~~~~g~~~g~~~  421 (489)
T PRK10207        343 LSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISA-LGLAMIAALVPQHLMGFILGMWF  421 (489)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhChHHHHHHHHHHHH
Confidence            222222333333322111111    1111 11122344455677788888888888 78888999999999999999999


Q ss_pred             HHHHHhhchhhHHHHHH
Q 017535          216 SFESILSSFAPPVVGIL  232 (370)
Q Consensus       216 ~~~~~~~~~~~~~~g~l  232 (370)
                      ....+|+.++..+....
T Consensus       422 l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        422 LTQAAAFLLGGYVATFT  438 (489)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999998887776644

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.21  E-value=1.4e-10  Score=106.65  Aligned_cols=131  Identities=14%  Similarity=0.138  Sum_probs=100.0

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017535          101 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  180 (370)
Q Consensus       101 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (370)
                      +++++..+.|++.+.+.++.+++.+++|+++||+|+|+.       +.++.++..+...+......  . ..+.+.+..+
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~~~~--~-~~~~l~~~r~  139 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-------IGIGMFLSSVISIVIPWAAG--G-GIALVVFCRV  139 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-------hHHHHHHHHHHHHHHHHHHH--c-CchHHHHHHH
Confidence            678999999999999999999999999999999999986       33333322222211111111  1 1334666778


Q ss_pred             HHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535          181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  242 (370)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~  242 (370)
                      +.|++.+...| ....++.+.+|+++|+++.|+.+....+|..+++.+.+.+.+...||...
T Consensus       140 ~~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~  200 (465)
T TIGR00894       140 IQGLAQGSVSP-ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI  200 (465)
T ss_pred             HHHHhcccchh-hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence            88888888888 78889999999999999999999999999999999999988763255443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=4e-10  Score=101.46  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=95.9

Q ss_pred             chHHHHHHHHHhhhhhhHHH-HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHH
Q 017535           72 IPSFQIIVAQGVTGSFPWSA-LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQI  149 (370)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~  149 (370)
                      ||.++.+....++.+..++. ..++|.|+ +++|+++.+.+++.+...++..++.++.|+++||+|||+.       ...
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~-------~~~   73 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKH-------LLW   73 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHH
Confidence            46666666555555555444 47889999 6799999999999999999999999999999999999976       222


Q ss_pred             HHHHHHHHHH-HHHHhCCCC-C-ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          150 SSLSAIPLAA-LLLLVLPDD-P-STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       150 ~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      +......... ......... . ..+....+..+..|++.+...+ ....+..+..+  .++...|......++|.+++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~  150 (396)
T TIGR00882        74 IISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAG-AIEAYIEKVSR--NSNFEYGKARMFGCVGWALCA  150 (396)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchh-hHHHHHHHhhh--hcccccchhhhhcccHHHHHH
Confidence            2111111111 111111110 0 0111223333445555555455 44444444322  244566778888899999999


Q ss_pred             HHHHHHHHh
Q 017535          227 PVVGILAQH  235 (370)
Q Consensus       227 ~~~g~l~~~  235 (370)
                      .++|.+.+.
T Consensus       151 ~~~g~l~~~  159 (396)
T TIGR00882       151 SIAGILFSI  159 (396)
T ss_pred             HHHhhhhcc
Confidence            998877653

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.19  E-value=3.6e-09  Score=98.24  Aligned_cols=124  Identities=17%  Similarity=0.064  Sum_probs=92.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC--hhHHHHHHHH
Q 017535          103 GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS--TPVMHGLVLV  180 (370)
Q Consensus       103 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  180 (370)
                      ..+..+.+++.+...++.+++.++.|+++||+|||+.       ..++.++..+...+... .+....  ....+.+..+
T Consensus        52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~-------~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~r~  123 (502)
T TIGR00887        52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV-------YGMELIIMIIATVASGL-SPGSSPKSVMATLCFWRF  123 (502)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-------HHHHHHHHHHHHHHHHH-ccCcccchHHHHHHHHHH
Confidence            3456677888999999999999999999999999976       23332222222222111 121111  1345777888


Q ss_pred             HHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      +.|++.+...+ ...+++.|.+|++.||++.++.+....+|..+++.+...+...
T Consensus       124 l~G~~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~  177 (502)
T TIGR00887       124 WLGVGIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAG  177 (502)
T ss_pred             HHHHHHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88998888887 7899999999999999999999999999999999888776653

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PTZ00207 hypothetical protein; Provisional

Probab=99.19  E-value=1.7e-09  Score=99.87  Aligned_cols=137  Identities=12%  Similarity=0.009  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 017535           87 FPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  166 (370)
Q Consensus        87 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      ..|.+..+.|.+.+++|++..+.+.+.+... ...++.++.|++.||+|+|+.       ..++.++......+..+...
T Consensus        42 ~~y~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~v-------llig~ll~~iG~ll~ala~~  113 (591)
T PTZ00207         42 FMYAFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPI-------FVLSMTVFCLGTLLFALTFQ  113 (591)
T ss_pred             HHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence            3345555666666899999999998887643 334566788999999999976       34443333322222222111


Q ss_pred             C-CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          167 D-DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       167 ~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      . .....+.+.+..++.|++.++..+ .....+.+.+| ++||.+.|+......+|+++.+.+...+.
T Consensus       114 ~~i~~s~~~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~  179 (591)
T PTZ00207        114 EVIEGSVVRLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF  179 (591)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 112355566677777887776655 45666677776 66999999999999999976544444333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.18  E-value=1.2e-09  Score=100.90  Aligned_cols=124  Identities=16%  Similarity=0.131  Sum_probs=91.4

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH----hC---CCCCChhHH
Q 017535          102 TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL----VL---PDDPSTPVM  174 (370)
Q Consensus       102 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~  174 (370)
                      ++.+..+.+++.+...++.+++.++.|+++||+|||+.       ..++..+..........    ..   ......+..
T Consensus        50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~-------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~  122 (479)
T PRK10077         50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-------LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPE  122 (479)
T ss_pred             ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHHHHHHHHHHHHHHhhccccccccccchhHHHH
Confidence            38899999999999999999999999999999999986       23332222211111110    00   011122344


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          175 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      +.+..++.|++.+...+ ...+++.|.+|+++||.+.++.+....+|..+++.+.+.+.
T Consensus       123 l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  180 (479)
T PRK10077        123 FVIYRIIGGIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA  180 (479)
T ss_pred             HHHHHHHHhhhHhHHhh-HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56777888999888888 88999999999999999999999988888888876665544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.17  E-value=7.4e-10  Score=113.27  Aligned_cols=158  Identities=18%  Similarity=0.127  Sum_probs=107.7

Q ss_pred             hhccchHHHHHHHHHhhhhhhH-HHHHHHHHHH-HHhCCCH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchh
Q 017535           68 SVIKIPSFQIIVAQGVTGSFPW-SALSFAAMWL-ELTGFSH--EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGR  143 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~s~--~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  143 (370)
                      .+++++.+..++...++..... .....+..++ ..++.+.  ...+++.+++.++.+++.+++|+++||+|||+.    
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~----   79 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRV----   79 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHH----
Confidence            3566677665555444443332 2222333333 5555543  446778888899999999999999999999975    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhc
Q 017535          144 IILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  223 (370)
                         +.++.++.++...+..+...  ....+.+++..++.|++.+...+ ...+++.+.+|+++|+.++|+......+|.+
T Consensus        80 ---l~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~  153 (1146)
T PRK08633         80 ---IRIVKLFEVGLTLLIVLAYY--LGWFWLAFAVTFLLGAQSAIYSP-AKYGIIPELVGKENLSRANGLLEAFTIVAIL  153 (1146)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHH--HccHHHHHHHHHHHHHHHHhhch-HHHhhhHHhcCcccchhhhhHHHHHHHHHHH
Confidence               23222222111111111110  11245567777888888888888 7889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHh
Q 017535          224 FAPPVVGILAQH  235 (370)
Q Consensus       224 ~~~~~~g~l~~~  235 (370)
                      +|+.+++++.+.
T Consensus       154 lg~~l~~~l~~~  165 (1146)
T PRK08633        154 AGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHh
Confidence            999999999876

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.16  E-value=2.2e-09  Score=95.16  Aligned_cols=132  Identities=16%  Similarity=0.128  Sum_probs=100.9

Q ss_pred             HHHHHHH-HHhCCCHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           93 SFAAMWL-ELTGFSHEK-TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      .+...++ +++|++..+ .|.+...+..+..++.+++|+++||+|.|+.       +.++.+...++.++..+     ..
T Consensus        46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-------L~l~~l~Wsl~t~L~~f-----a~  113 (511)
T TIGR00806        46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-------LVLQALSFVCVWLLLLL-----GT  113 (511)
T ss_pred             HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-------HHHHHHHHHHHHHHHHH-----HH
Confidence            3444556 899999999 9999999999999999999999999999975       33333322222222221     11


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      ....+.+..++.|++.+...  ....++...+|+++|++++|+.+....+|.++++++.++ .... ||.
T Consensus       114 Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~-gWr  179 (511)
T TIGR00806       114 SVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTL-GWI  179 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc-Cch
Confidence            25567788888999877665  458888899999999999999999999999999999999 4333 443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.16  E-value=3e-11  Score=104.76  Aligned_cols=151  Identities=11%  Similarity=0.066  Sum_probs=111.2

Q ss_pred             HHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHH
Q 017535           77 IIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAI  155 (370)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~  155 (370)
                      .+.+..+++..- |.+-...+-.-+.+|.+....|++.....+..+++++++|+++||++|++.       +.++..+-.
T Consensus        37 il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-------~~vG~~iW~  109 (493)
T KOG1330|consen   37 ILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-------IAVGIFIWT  109 (493)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-------EeeHHHHHH
Confidence            334444444443 222233333336789999999999999999999999999999999999986       233322222


Q ss_pred             HHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          156 PLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ...+.  ..+   ....|.+.++..+.|++-+...| +..++++|.+|..+|++++++.++...+|..+|-.+++.+.+.
T Consensus       110 ~Av~~--~~f---s~~Fwq~~l~R~~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~  183 (493)
T KOG1330|consen  110 LAVFA--SGF---SNHFWQVLLCRGFVGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASL  183 (493)
T ss_pred             HHHHH--HHH---HHHHHHHHHHHHHhccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccC
Confidence            11111  111   13467788889999999998888 9999999999999999999999999999999998888887777


Q ss_pred             hcCCC
Q 017535          236 VYGFK  240 (370)
Q Consensus       236 ~~g~~  240 (370)
                      .+.|+
T Consensus       184 ~~~Wr  188 (493)
T KOG1330|consen  184 TFWWR  188 (493)
T ss_pred             ccceE
Confidence            63333

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.15  E-value=9.7e-10  Score=112.15  Aligned_cols=120  Identities=12%  Similarity=0.107  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHH
Q 017535          107 EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI  186 (370)
Q Consensus       107 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (370)
                      ...++..+.+.+..++..+++|+++||++||+..    .......++......+.+. .    ..++.+++..++.|++.
T Consensus        52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~----~~~~~~~~~~~~~~~~~~~-~----~s~~~l~~~~~l~gi~~  122 (1140)
T PRK06814         52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA----KILKFAEIGIAALAIYGFH-L----NSVPLLFAALFLMGIHS  122 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH----HHHHHHHHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHH
Confidence            4567777788899999999999999999999741    0011111111111111111 1    22556778888999998


Q ss_pred             HhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          187 SWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ++..| ...+++.+.+|+++++.++|+.++...+|.++||.++|++.+..
T Consensus       123 a~~~p-~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~  171 (1140)
T PRK06814        123 ALFGP-IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG  171 (1140)
T ss_pred             Hhhch-HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888 88999999999999999999999999999999999999998865

>PRK10133 L-fucose transporter; Provisional

Probab=99.15  E-value=4.8e-09  Score=95.43  Aligned_cols=131  Identities=13%  Similarity=0.050  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+-+++|.++.+.++..+.+.++..++.++.|++.||+|+|+.       +..+..+......+... ... ..+.
T Consensus        47 ~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~-------l~~g~~~~~~~~~l~~~-~~~-a~~~  117 (438)
T PRK10133         47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-------IITGLFLYALGAALFWP-AAE-IMNY  117 (438)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHHHHHHHHHHH-HHh-cCCH
Confidence            56777768999999999999999999999999999999999999976       33333333222211110 111 2224


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      +.+.+..++.|++.+...+ ..++++.+..|++.++...++.+.+..+|..+++.+++.+.
T Consensus       118 ~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        118 TLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567778888888887777 77788888766666666899999999999999999887765

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.15  E-value=1.2e-09  Score=100.75  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHH
Q 017535          104 FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTG  183 (370)
Q Consensus       104 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  183 (370)
                      .+..+.+++.+...++..++.++.|+++||+|||+.       ..++.++......+... .. .....+.+.+..++.|
T Consensus        68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~r~l~G  138 (481)
T TIGR00879        68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-------LLIIALLFVIGAILMGL-AA-FALSVEMLIVGRVLLG  138 (481)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-------HHHHHHHHHHHHHHHHH-hc-cccchHHHHHHHHHHH
Confidence            348999999999999999999999999999999975       33333322222222111 12 2222345666778888


Q ss_pred             HHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          184 LFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      ++.+...+ ...+++.+.+|+++|+.+.++.+....+|..+++.+.
T Consensus       139 ~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       139 IGVGIASA-LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             hhhhHHHh-HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            88877777 7788999999999999999999999999999998887

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.15  E-value=1.8e-09  Score=98.84  Aligned_cols=130  Identities=13%  Similarity=0.101  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      .+.|.+.+++|.+..+.+++.+...+...++.++.|+++||+++|+.       ++.+.++....... .. ..  +. .
T Consensus        40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~-~~-~~--~~-~  107 (455)
T TIGR00892        40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV-------VIAGGLLASLGMIL-AS-FS--SN-V  107 (455)
T ss_pred             hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH-------HHhhHHHHHHHHHH-HH-Hh--hh-H
Confidence            46777778999999999999999888889999999999999999975       33332222221111 11 11  11 2


Q ss_pred             HHHH-HHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHG-LVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+. ...++.|++.+...+ ...+++.+.++ ++|+++.|+.+....++..++|.+.+.+.+..
T Consensus       108 ~~l~~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~  170 (455)
T TIGR00892       108 IELYLTAGFITGLGLAFNFQ-PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF  170 (455)
T ss_pred             HHHHHHHHHHHHhcchhhhh-HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            2222 223455666555444 44566677775 67999999999999999999999999998876

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.14  E-value=1.7e-09  Score=96.81  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCh
Q 017535           92 LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  171 (370)
Q Consensus        92 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (370)
                      ..++|.|++++|.|..++|++.+...+...++.++.|.++||++|+...   .+...+...+   . ...+...   ..+
T Consensus        24 ~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~---~~~~~~~~~~---~-~~~~~~~---~~~   93 (382)
T PRK11128         24 LPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPA---LRLLALLTLL---F-AVAFWFG---AHS   93 (382)
T ss_pred             hhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHH---HHHHHHHHHH---H-HHHHHHh---ccc
Confidence            3678899988999999999999999999999999999999999985321   1111111111   1 1111111   122


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+.+..++.|++.+...| ...++..+.  .++++.+.+.......+|.++||.++|++.++.
T Consensus        94 ~~~l~i~~~l~g~~~~~~~~-~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         94 FWLLFVAIGLFNLFFSPLVP-LTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             HHHHHHHHHHHHHHHccccc-HHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44455566667777666666 555565554  344788888888899999999999999999987

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.14  E-value=4.3e-09  Score=94.65  Aligned_cols=155  Identities=16%  Similarity=0.092  Sum_probs=89.6

Q ss_pred             hccchHHHHHHHHHhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           69 VIKIPSFQIIVAQGVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      .++.|....++..++...........+|.|+ +++|.++.+.|++.+...+ +..++.+++++ .||+|+|+.       
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~-------   83 (393)
T PRK15011         12 SFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKS-------   83 (393)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhH-------
Confidence            4445555444444444443344446788888 8899999999998776644 55566666666 999999875       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCch--hHHHHHHHHHHHHhhch
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR--TSVYAMDRSFESILSSF  224 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~  224 (370)
                      .++...+...+....+ ...  .. .+.+.+...+.+...+...| ...++..+..+++.|  +...++.+....+|..+
T Consensus        84 ~~~~~~~~~~~~~~~~-~~~--~~-~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~  158 (393)
T PRK15011         84 LIVFCCLLGVLACTLF-AWN--RN-YFVLLFVGVFLSSFGSTANP-QMFALAREHADKTGREAVMFSSFLRAQVSLAWVI  158 (393)
T ss_pred             HHHHHHHHHHHHHHHH-HHh--hH-HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence            2222111111111111 111  22 22222222223333333344 445555665555433  34457888888999999


Q ss_pred             hhHHHHHHHHhh
Q 017535          225 APPVVGILAQHV  236 (370)
Q Consensus       225 ~~~~~g~l~~~~  236 (370)
                      +|.+++.+.+..
T Consensus       159 g~~i~~~l~~~~  170 (393)
T PRK15011        159 GPPLAYALAMGF  170 (393)
T ss_pred             hhHHHHHHHHhc
Confidence            999999998876

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.14  E-value=8.5e-09  Score=95.21  Aligned_cols=154  Identities=12%  Similarity=0.082  Sum_probs=100.1

Q ss_pred             cchHHHHHHHHHhhhhhhHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hhhCCCchhH
Q 017535           71 KIPSFQIIVAQGVTGSFPWSA-LSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-----SARFPNSGRI  144 (370)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~~~~~~  144 (370)
                      ++|+...++...+........ ...+|.++++.|.+..+.+.+..+ .... ++.++.|.++||+     |||+.     
T Consensus        10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~-~~~~-~~~~l~gpl~Dr~~~~~~Grrr~-----   82 (491)
T PRK11010         10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLV-GQAY-VFKFLWSPLMDRYTPPFLGRRRG-----   82 (491)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHH-HHHHHHHHHHHcccccCCCCchH-----
Confidence            444544444333344444333 357889998889999999986332 2222 5789999999999     77764     


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhch
Q 017535          145 ILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSF  224 (370)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  224 (370)
                        .+..+.+............. .....+.+.+..++.+++.+...+ ...++..|.+|+++|+.+.++......+|..+
T Consensus        83 --~ll~~~i~~~~~~~~~a~~~-~~~~l~~l~~~~~l~~~~~a~~~i-~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ll  158 (491)
T PRK11010         83 --WLLATQLLLLVAIAAMGFLE-PGTQLRWLAALAVVIAFCSASQDI-VFDAWKTDVLPAEERGAGAAISVLGYRLAMLV  158 (491)
T ss_pred             --HHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHH
Confidence              22222222211111111122 122244455556666776666666 67888999999999999999999999999999


Q ss_pred             hhHHHHHHHHh
Q 017535          225 APPVVGILAQH  235 (370)
Q Consensus       225 ~~~~~g~l~~~  235 (370)
                      ++.+.+++.+.
T Consensus       159 g~~l~~~l~~~  169 (491)
T PRK11010        159 SGGLALWLADR  169 (491)
T ss_pred             HHHHHHHHHhc
Confidence            99999888873

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=2.6e-10  Score=97.04  Aligned_cols=210  Identities=15%  Similarity=0.126  Sum_probs=132.4

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ   81 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (370)
                      .|+.+-+..|.+.+|++++++.++-..+.++.++..+..+...                ..-..+++++++|..+.....
T Consensus       215 fGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~----------------~~~~~~~~Ll~dP~I~~~aga  278 (464)
T KOG3764|consen  215 FGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST----------------EQGTPMWSLLMDPYILLIAGA  278 (464)
T ss_pred             cccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc----------------ccCccHHHHHhCchHhhhhcc
Confidence            5778888999999999999999888877776655422222111                011124578889987766655


Q ss_pred             HhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA  159 (370)
Q Consensus        82 ~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (370)
                      ........++. -.++.+. +.+..+.-+.|+.+....+...++..+.|.++||++..+.      ++....+.... ..
T Consensus       279 i~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~w------l~~~~gl~~~G-~~  351 (464)
T KOG3764|consen  279 ITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRW------LLSLGGLATVG-VS  351 (464)
T ss_pred             hhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhH------HHHHHHHHHHH-HH
Confidence            55555554555 4567777 7777555589999999999999999999999999984432      11211111111 11


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHH----hcCCCCccchhccccCCC---chhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFIS----WNAPATNNPIFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      ...  .+.... +..+.+..+..+++.+    ...|  +..++.|....+   ..|.++++......++.++||.++|.+
T Consensus       352 ~~~--iP~~~~-~~~L~vp~~~l~~~i~~~dasl~P--~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~i  426 (464)
T KOG3764|consen  352 SGP--IPFATS-IAQLWVPNFGLGFGIGLADASLIP--TLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSL  426 (464)
T ss_pred             hch--hHhhhh-HHHHhhhhHHHHHHHHHHHHHHhh--hhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchh
Confidence            111  111111 2223333333333332    2233  244444443333   678999999999999999999999999


Q ss_pred             HHhhcCCC
Q 017535          233 AQHVYGFK  240 (370)
Q Consensus       233 ~~~~~g~~  240 (370)
                      .+.. ||.
T Consensus       427 v~~i-GF~  433 (464)
T KOG3764|consen  427 VEAI-GFE  433 (464)
T ss_pred             eeeh-hHH
Confidence            9988 643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.13  E-value=1.1e-08  Score=94.12  Aligned_cols=142  Identities=10%  Similarity=-0.014  Sum_probs=87.7

Q ss_pred             HHHHHHH-HHhCCCHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH--hC
Q 017535           93 SFAAMWL-ELTGFSHE----KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL--VL  165 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~----~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  165 (370)
                      +.++.+. +..+.+..    ..+++.++..+..++..++..++..|..+|...........++.++.........+  ..
T Consensus       293 s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~  372 (475)
T TIGR00924       293 TSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF  372 (475)
T ss_pred             hHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4456666 43333322    25667777777777777766666666666522111222223333322211111111  11


Q ss_pred             CC--CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          166 PD--DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       166 ~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ..  ...+.+.+....++.+++.....| ...+++.+..|++.||+.+|+......+|..+++.+.....+.
T Consensus       373 ~~~~~~~s~~~~i~~~~~~~~ge~~~~p-~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       373 ADAGGLTSPWFMVLIYLFQTLGELMISP-LGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             cCCCCccCHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            11  123455567777888888888888 8899999999999999999999999998888888877765544

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.13  E-value=3.5e-09  Score=93.94  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=90.1

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-----hhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-----SARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      .+|.++++.|+|..+.+++... .+...+ .++.|+++||+     |||+.     + +..+.++....... +..... 
T Consensus        10 ~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~-----~-l~~~~~~~~~~~~~-l~~~~~-   79 (356)
T TIGR00901        10 TLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRS-----W-LVLTQVLLLSLLLI-LSFLVP-   79 (356)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHH-----H-HHHHHHHHHHHHHH-HHcCCc-
Confidence            4577889999999999998654 444444 88999999998     55543     1 12222222111111 111222 


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ....+.+....++.+++.+...+ ...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  146 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDI-ALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE  146 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            22234444555555666665556 67888999999999999999999999999999999999888776

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.11  E-value=9.5e-10  Score=99.35  Aligned_cols=130  Identities=22%  Similarity=0.242  Sum_probs=104.3

Q ss_pred             HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017535          101 LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  180 (370)
Q Consensus       101 ~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (370)
                      .+.+++.+.+++++....+.+++.+.+|++.||+|.|+.       ...+.++......+.-+.....   .+.+.++.+
T Consensus        67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v-------~~~~~~~sa~~t~l~P~aa~~~---~~~~~~~R~  136 (466)
T KOG2532|consen   67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRV-------FFISGLISALLTLLTPLAASIG---FYLLLVLRF  136 (466)
T ss_pred             eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHH-------HHHHHHHHHHHHHHHHHHHHhc---chhhHHHHH
Confidence            478899999999999999999999999999999999976       3444333333333222221111   225688899


Q ss_pred             HHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                      +.|++.+...| ....+.....|+++|++..++.....++|..++-++.|.+.+...||..
T Consensus       137 lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~s  196 (466)
T KOG2532|consen  137 LQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPS  196 (466)
T ss_pred             HhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCch
Confidence            99999999999 8999999999999999999999999999999999999999998436443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.11  E-value=4.9e-08  Score=84.53  Aligned_cols=166  Identities=16%  Similarity=0.122  Sum_probs=117.9

Q ss_pred             hhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-Hhhh
Q 017535           61 VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSAR  137 (370)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~  137 (370)
                      .....+++++.+|....++.+.+.....+... ..+-+|- +.+|++..+...+......+..+|..+.|++..| .+++
T Consensus       196 ~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~  275 (403)
T PF03209_consen  196 PFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKK  275 (403)
T ss_pred             cHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence            34455667778888666666655566665555 4566777 8899999999999999999999999999988764 3322


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHH
Q 017535          138 FPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF  217 (370)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  217 (370)
                      +.       ..+++..+......+.......  +.+.+-...+++|++.|.... ...+.+.+..++++.|...|.....
T Consensus       276 ~~-------a~~G~~~~~~~f~lii~a~~~~--~~~~~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaa  345 (403)
T PF03209_consen  276 RT-------AALGCLLGALAFALIILAGPLG--SPWLFRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAA  345 (403)
T ss_pred             HH-------HHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHH
Confidence            22       2333333332222222211211  234566677788888777666 5677778888889999999999999


Q ss_pred             HHHhhchhhHHHHHHHHhh
Q 017535          218 ESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.++..++..++|.+.|..
T Consensus       346 QA~A~Glg~~~GG~~~D~~  364 (403)
T PF03209_consen  346 QAIARGLGTFLGGALRDLV  364 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999986

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.10  E-value=1.2e-11  Score=113.73  Aligned_cols=223  Identities=19%  Similarity=0.304  Sum_probs=0.0

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCC-CCCCCCC---C--C-CCcc---c---cC---cccchhhhhhHHHHhhhccchH
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFAND-PHFPDGG---T--A-NSDQ---V---SS---KSFRSDVKVLIQEAKSVIKIPS   74 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~-~~~~~~~---~--~-~~~~---~---~~---~~~~~~~~~~~~~~~~~~~~~~   74 (370)
                      .|...|++.+++.++.++..++++|+ |...+..   +  + +.++   .   ..   .......++.++.++++++||.
T Consensus       227 AWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~  306 (539)
T PF03137_consen  227 AWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPV  306 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChH
Confidence            38888999999999999888888776 4431100   0  0 0000   0   00   0011234667788899999999


Q ss_pred             HHHHHHHHhhhhhh-HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHH
Q 017535           75 FQIIVAQGVTGSFP-WSALSFAAMWL-ELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  151 (370)
Q Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~  151 (370)
                      +....+........ .++.+|+|.|+ .+++.++.+++++.....+ +.++|.+++|++.+|+.-+...  ..+..++..
T Consensus       307 f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~--~~~~~~v~~  384 (539)
T PF03137_consen  307 FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARG--AAKFCIVVS  384 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHH--HHHHHHHHH
Confidence            87776666555554 56668999999 8899999999999887755 7788999999999998654321  222222222


Q ss_pred             HHHHHH-HHHHHHhC----------CC----------------------------------C-CChhHHHHHHHHHHHHH
Q 017535          152 LSAIPL-AALLLLVL----------PD----------------------------------D-PSTPVMHGLVLVVTGLF  185 (370)
Q Consensus       152 ~~~~~~-~~~~~~~~----------~~----------------------------------~-~~~~~~~~~~~~~~g~~  185 (370)
                      ++.++. ...+++.-          +.                                  . ...+..+.+.+++..+.
T Consensus       385 ~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~  464 (539)
T PF03137_consen  385 IVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFF  464 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHH
Confidence            222222 11111110          00                                  0 00011222222333333


Q ss_pred             HHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHHHHHhh
Q 017535          186 ISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGILAQHV  236 (370)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~l~~~~  236 (370)
                      .+.... +......+.+|+++|+.+.|+..++..+ |...+|++.|.+.|..
T Consensus       465 ~~~~~~-p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  465 TFMSQV-PSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------------------------------
T ss_pred             HHhccc-chheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            333333 4456667889999999999998877665 5588999999999986

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.10  E-value=6.3e-09  Score=94.77  Aligned_cols=136  Identities=18%  Similarity=0.131  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHH-HHhC---CCHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH
Q 017535           89 WSALSFAAMWL-ELTG---FSHEKT---AFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL  161 (370)
Q Consensus        89 ~~~~~~~~~~~-~~~g---~s~~~~---~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (370)
                      ...+.+...++ ++++   .+..+.   +.+++...++..+|.+++|+++||+|||+.       +.++..+....... 
T Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~-------l~~~~~~~~~~~~~-  109 (432)
T PRK10406         38 FYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS-------MLISVCMMCFGSLV-  109 (432)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-------HHHHHHHHHHHHHH-
Confidence            34444444455 6663   455433   334444566667999999999999999986       33333322222211 


Q ss_pred             HHhCCCCC----ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          162 LLVLPDDP----STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       162 ~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      ....+...    .....+.+..++.|++.+...+ ...+++.|..|+++||...++.......|..+++.+...+.
T Consensus       110 ~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        110 IACLPGYETIGTWAPALLLLARLFQGLSVGGEYG-TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             HhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11112111    1123466778889998888888 78899999999999999999888777777777776655443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.09  E-value=3.1e-09  Score=95.11  Aligned_cols=139  Identities=18%  Similarity=0.161  Sum_probs=94.4

Q ss_pred             hhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           87 FPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        87 ~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ..+++. .++|.|++++|++..+.|++.+...+...++.++.|.++||++|+..   ..+...++..+.   . ..+...
T Consensus        18 ~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~---~~~~~~~~~~l~---~-~~~~~~   90 (382)
T TIGR00902        18 CAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIII---ALRLLALASAIF---A-AAFSAG   90 (382)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHH---H-HHHHHh
Confidence            333443 67889998899999999999999999999999999999999987532   111111111111   1 111111


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          166 PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       166 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                        .+ ..+.+.+..++.+.+.+...| ...++..+ . .++++..+|.......+|..++|.+.|.+.+.. ||
T Consensus        91 --~~-~~~~l~~~~~l~~~~~~~~~p-~~~al~~~-~-~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~-g~  157 (382)
T TIGR00902        91 --AH-NAWLLFIAIGLFALFFSAGMP-IGDALANT-W-QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMF-DE  157 (382)
T ss_pred             --hh-hHHHHHHHHHHHHHHHccchh-HHHHHHHH-H-HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHc-Ch
Confidence              12 234444455556665555556 55555544 2 466899999999999999999999999999987 53

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00898 2A0119 cation transport protein

Probab=99.07  E-value=2.1e-09  Score=100.01  Aligned_cols=126  Identities=17%  Similarity=0.146  Sum_probs=94.5

Q ss_pred             HHHHHHHhCCC---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCh
Q 017535           95 AAMWLELTGFS---HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  171 (370)
Q Consensus        95 ~~~~~~~~g~s---~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (370)
                      .|.+.++++++   ..+.++..+...++.+++.++.|+++||+|||+.       ..++.++..+......  +.  + .
T Consensus       112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~-------~~~~~~~~~i~~~~~~--~~--~-~  179 (505)
T TIGR00898       112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV-------LLLSTLVTAVSGVLTA--FS--P-N  179 (505)
T ss_pred             cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-------HHHHHHHHHHHHHHHH--Hc--c-c
Confidence            34444778898   8899999999999999999999999999999975       3333333222221111  11  2 2


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      .+.+.+..++.|++.+...+ ...+++.|.+|++.|+.+.++......+|..+++.+.+.+.
T Consensus       180 ~~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~  240 (505)
T TIGR00898       180 YTVFLVFRLLVGMGIGGIWV-QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP  240 (505)
T ss_pred             HHHHHHHHHHHHhhccchHH-HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45567777888888887777 78899999999999999999998888888888887765543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.06  E-value=8.8e-10  Score=104.23  Aligned_cols=133  Identities=13%  Similarity=0.022  Sum_probs=102.5

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC------
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD------  167 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  167 (370)
                      .++.+-++++++..+.|++.+.+.++..++.++.+++.||.+||+..       .++.++..+..++..  .++      
T Consensus        55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i-------~~g~ll~~lg~ll~a--lphf~~~~y  125 (633)
T TIGR00805        55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI-------GIGCAIMGLGSFLLS--LPHFLSGRY  125 (633)
T ss_pred             hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE-------EecHHHHHHHHHHHh--ChHHhcCCc
Confidence            44555588999999999999999999999999999999999988762       222222211111111  110      


Q ss_pred             ----------------------C--------------------CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCC
Q 017535          168 ----------------------D--------------------PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK  205 (370)
Q Consensus       168 ----------------------~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  205 (370)
                                            .                    ...+..+.+..++.|++.+...+ ...+++.|.+|++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d~~~~~  204 (633)
T TIGR00805       126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP-LGISYIDDFAKSK  204 (633)
T ss_pred             cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh-cCchhhhccCCcc
Confidence                                  0                    11244566788899998888888 8899999999999


Q ss_pred             chhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          206 SRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       206 ~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +|+...|+.+....+|.++|+.++|++.+.+
T Consensus       205 ~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       205 NSPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             ccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999998765

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=5.1e-09  Score=95.63  Aligned_cols=140  Identities=16%  Similarity=0.185  Sum_probs=91.5

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC-
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS-  170 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  170 (370)
                      .|++.|+ +.+|+++.++|++.++..+..++..++.|+++||.++|.-+++..  ++++.....+....+ ...+.... 
T Consensus        20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~--i~~~~~~~~i~~~~~-~~~~~~~~~   96 (437)
T TIGR00792        20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPW--LLIGAIPFSIVLVLL-FTTPDFSAT   96 (437)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchh--HHHhHHHHHHHHHHH-HhCCCCCcc
Confidence            6778888 789999999999999999999999999999999854332211111  222222222222222 22222211 


Q ss_pred             -hhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          171 -TPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       171 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       ..+.+.+..++.+.+.+...+ +..++..+.. ++++|+...++.+....+|+.+++.+.+.+....
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~  163 (437)
T TIGR00792        97 GKLVYAYITYILLGLFYSFVNI-PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYF  163 (437)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcc-cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             123334444555655555444 5567777766 4678999999999999999988888877777654

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00896 CynX cyanate transporter

Probab=99.03  E-value=2e-08  Score=89.01  Aligned_cols=129  Identities=13%  Similarity=0.017  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|++..+.+++.+...++..++.++.|+++||+|+|+.       ..++..+..... ... ..   +. .
T Consensus        21 ~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~-~~~-~~---~~-~   87 (355)
T TIGR00896        21 PLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-------VAAGLLLIAAGI-LIR-SA---PG-T   87 (355)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-------HHHHHHHHHHHH-HHH-Hh---cc-H
Confidence            45677779999999999999999999999999999999999999976       333332222111 111 11   22 3


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ .....+.+..| ++|+.+.++.+....+|..+++.+.+.+.+..
T Consensus        88 ~~l~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~  149 (355)
T TIGR00896        88 ALLFAGTALIGVGIAIINV-LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHS  149 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhc-cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3455666777777766555 55667777665 57999999999999999999999998887764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.02  E-value=1.5e-07  Score=85.31  Aligned_cols=219  Identities=10%  Similarity=0.013  Sum_probs=120.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCC--CCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhh
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFANDPHF-PDGGT--ANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF   87 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (370)
                      +.|+.|++.+++.++..++..+..||.+. .+.+.  ++.++..+.......++.++.++++  .|.++.++...++.+.
T Consensus       195 ~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~m--P~~m~~l~~vqffsW~  272 (477)
T TIGR01301       195 NLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKHGEEAFFGELFGAFKYL--PRPVWILLLVTCLNWI  272 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhcccccccchhhhHHHHHHHHHHC--CHHHHHHHHHHHHHHH
Confidence            56889999888888888888888888322 11111  0000000100111112333333332  3346666666666666


Q ss_pred             h-HHHHHHHHHHH-H-HhCCCHH------HH---HHHH-HHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH
Q 017535           88 P-WSALSFAAMWL-E-LTGFSHE------KT---AFLM-ALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA  154 (370)
Q Consensus        88 ~-~~~~~~~~~~~-~-~~g~s~~------~~---~~~~-~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  154 (370)
                      . +.+..|.+.|. + .++.++.      +.   |.+. ....+...+.+++..++.+|+|+|+.      ...++.++.
T Consensus       273 a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~------~~~~s~~~~  346 (477)
T TIGR01301       273 AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKR------LWGIVNIIL  346 (477)
T ss_pred             HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHH
Confidence            6 44557777877 3 4543321      11   2222 23345555666777778888875433      123332222


Q ss_pred             HHHHHHH-HHhC-CC--------------CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC--CchhHHHHHHHH
Q 017535          155 IPLAALL-LLVL-PD--------------DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE--KSRTSVYAMDRS  216 (370)
Q Consensus       155 ~~~~~~~-~~~~-~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~  216 (370)
                      ....... +... .+              .....+...+.+...|+..+.... ..++++++..++  +..|..+|+.|.
T Consensus       347 ~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s-iPfal~s~~~~~~~~~~G~~mgilN~  425 (477)
T TIGR01301       347 AICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS-IPFALASIRSSNLGAGQGLSMGVLNL  425 (477)
T ss_pred             HHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH-HhHHHHHHHccccCCCCcchhhHHHH
Confidence            2222211 1111 00              001023445555566665555444 459999998884  556999999999


Q ss_pred             HHHHhhchhhHHHHHHHHhhcC
Q 017535          217 FESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       217 ~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      +..+.+.+.....|.+.+..++
T Consensus       426 ~I~lpQii~sl~~g~~~~~~g~  447 (477)
T TIGR01301       426 AIVIPQIIVSLGSGPWDQLFGG  447 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999988887777643

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.01  E-value=1.7e-08  Score=91.45  Aligned_cols=136  Identities=13%  Similarity=0.123  Sum_probs=91.6

Q ss_pred             HHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HhhhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 017535           89 WSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF----LSARFPNSGRIILAQISSLSAIPLAALLLL  163 (370)
Q Consensus        89 ~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (370)
                      |... .+++.|++.+|.++...+++.....+.+++..++.|+++||    +|||++       .++.......+...++.
T Consensus        20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-------~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-------FIAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-------HHHHHHHHHHHHHHHHH
Confidence            4444 67788889999999999999999999999999999999994    888876       22221222211111111


Q ss_pred             hCCC-----------CCCh--hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCch--hHHHHHHHHHHHHhhchhhHH
Q 017535          164 VLPD-----------DPST--PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSR--TSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       164 ~~~~-----------~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~  228 (370)
                      ....           ....  .+...+.+.+..++.....+ +..+++.|.+|+++|  +.+.++.+.+.++|+.+|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~  171 (477)
T TIGR01301        93 FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAA  171 (477)
T ss_pred             hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111           0000  12222333333445554455 568899999998765  689999999999999999998


Q ss_pred             HHHH
Q 017535          229 VGIL  232 (370)
Q Consensus       229 ~g~l  232 (370)
                      ++..
T Consensus       172 g~~~  175 (477)
T TIGR01301       172 GAYS  175 (477)
T ss_pred             HHHH
Confidence            8865

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.01  E-value=1.5e-08  Score=93.85  Aligned_cols=113  Identities=17%  Similarity=0.170  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHHHHHh
Q 017535          113 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS----TPVMHGLVLVVTGLFISW  188 (370)
Q Consensus       113 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~  188 (370)
                      .+...++..+|.++.|+++||+|||+.       +.++.++..+.... ....++...    ....+.+..++.|++.+.
T Consensus        63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~-------l~~~~~l~~i~~~~-~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~  134 (490)
T PRK10642         63 FSVPFLIRPLGGLFFGMLGDKYGRQKI-------LAITIVIMSISTFC-IGLIPSYATIGIWAPILLLLCKMAQGFSVGG  134 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHhHhHh
Confidence            355678899999999999999999976       33333333222222 111221110    012356777888998888


Q ss_pred             cCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          189 NAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      ..+ ...+++.|.+|+++||...++......+|..+++.+...+..
T Consensus       135 ~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~  179 (490)
T PRK10642        135 EYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIST  179 (490)
T ss_pred             hHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            887 788999999999999999999888877888777766655443

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.99  E-value=2.1e-09  Score=81.37  Aligned_cols=109  Identities=14%  Similarity=0.204  Sum_probs=79.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCc
Q 017535          115 LFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATN  194 (370)
Q Consensus       115 ~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  194 (370)
                      ...++..++.++.|++.||++||+.       ...+............  ..  . ..+.+.+..++.|++.+...+ ..
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~-------~~~~~~~~~~~~~~~~--~~--~-~~~~~~~~~~~~g~~~~~~~~-~~   72 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPV-------LLVGLFIFVLSTAMFA--LS--S-NITVLIIARFLQGFGAAFALV-AG   72 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHH-------HHHHHHHHHHHHHHHH--Hh--c-cHHHHHHHHHHHHHHHHHHHH-hH
Confidence            4567888899999999999998875       2332222222211111  11  1 234455566777777776666 77


Q ss_pred             cchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          195 NPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+++.+..|+++|+++.++.+....++..++|.+.+.+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  114 (141)
T TIGR00880        73 AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL  114 (141)
T ss_pred             HHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc
Confidence            888999999999999999999999999999999999988764

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.96  E-value=5e-08  Score=89.90  Aligned_cols=138  Identities=12%  Similarity=0.101  Sum_probs=91.1

Q ss_pred             HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           91 ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL----SARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        91 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ...|++.|+ +..|+++..+|.++.+.-+..++..++.|+++||.    |||++.      +.++..... +...+++..
T Consensus        25 ~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~------il~g~i~~~-i~~~llf~~   97 (473)
T PRK10429         25 VYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPW------ILIGTLANS-VVLFLLFSA   97 (473)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchh------HhhhhHHHH-HHHHHHHcC
Confidence            346788888 77899999999999999999999999999999954    776651      222322222 222222222


Q ss_pred             CCCCC--hhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          166 PDDPS--TPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       166 ~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..+.  ..+.+.+..++.+++...... +..++..+.. ++++|...++....+.++++.+.+.+...+.+..
T Consensus        98 p~~~~~~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429         98 HLFEGTAQYVFVCVTYILWGMTYTIMDI-PFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHcc-hHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            21111  122333334444555555555 6678888877 5788999999888888888777776666555544

>PRK09952 shikimate transporter; Provisional

Probab=98.95  E-value=3.4e-08  Score=90.10  Aligned_cols=145  Identities=14%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             HHhhhhhhHHHHH-HHHHHH-HHh--CCCHHHHHHHH-----HHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHH
Q 017535           81 QGVTGSFPWSALS-FAAMWL-ELT--GFSHEKTAFLM-----ALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISS  151 (370)
Q Consensus        81 ~~~~~~~~~~~~~-~~~~~~-~~~--g~s~~~~~~~~-----~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~  151 (370)
                      ..++.+.-..... ..|.+. +++  +.++. .+.+.     +...++..+|.++.|+++||+|||+.       +.++.
T Consensus        30 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~-------l~~~~  101 (438)
T PRK09952         30 GAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM-------LMLTV  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH-------HHHHH
Confidence            3333333333343 334455 444  66665 34432     23345667888999999999999976       33333


Q ss_pred             HHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhH
Q 017535          152 LSAIPLAALLLLVLPDDPS----TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP  227 (370)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  227 (370)
                      .+..... +.....++...    ..+.+.+..++.|++.+...+ ....++.|..|+++|+...+..+....+|..+++.
T Consensus       102 ~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~  179 (438)
T PRK09952        102 WMMGIAT-ALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTG  179 (438)
T ss_pred             HHHHHHH-HHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            2222221 11111111111    012355667888998887777 66889999999999999999988888888888877


Q ss_pred             HHHHHHHh
Q 017535          228 VVGILAQH  235 (370)
Q Consensus       228 ~~g~l~~~  235 (370)
                      +.+.+...
T Consensus       180 ~~~~l~~~  187 (438)
T PRK09952        180 LVSLISMM  187 (438)
T ss_pred             HHHHHHHh
Confidence            77766544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.95  E-value=1.1e-08  Score=90.19  Aligned_cols=160  Identities=16%  Similarity=0.179  Sum_probs=110.0

Q ss_pred             hhccchH-HHHHHHHHhhh-hhhHHHHHHHHHHH-HHhC----CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCC
Q 017535           68 SVIKIPS-FQIIVAQGVTG-SFPWSALSFAAMWL-ELTG----FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFP  139 (370)
Q Consensus        68 ~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g----~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~  139 (370)
                      ..+++|+ ++.++..-+.- +..|++-..+..|+ ...+    ++.+++.-+++.+....-+..+++||++||+ |+|+.
T Consensus        15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t   94 (498)
T COG3104          15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT   94 (498)
T ss_pred             ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence            3566665 44444433333 34466666777777 6666    9999998888888777778899999999995 77765


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCC--chhHHHHHHHHH
Q 017535          140 NSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK--SRTSVYAMDRSF  217 (370)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~  217 (370)
                             ++++.++..+.-.+  +..+... ....+.+.+..++++.|..=+ +..+++.+.+|++  +|-.++++..+.
T Consensus        95 -------I~lGail~~iGh~~--L~~~~~~-~~~gl~i~L~~I~iG~Gl~K~-NiS~llg~ly~~~DprrD~gFt~fY~~  163 (498)
T COG3104          95 -------IVLGAILMAIGHLV--LAISSVS-GPGGLYIGLALIIVGTGLFKP-NISSLLGELYPKDDPRRDGGFTLFYMG  163 (498)
T ss_pred             -------HHHHHHHHHHHHHH--Hhccccc-cccHHHHHHHHHHhccccccc-cHHHHHHHhcCCCCcccCCCccEEEEE
Confidence                   34443333322222  2222201 122355666667788888888 8889999988753  377788888899


Q ss_pred             HHHhhchhhHHHHHHHHhhcCC
Q 017535          218 ESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       218 ~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      .++|+.++|.+.+++.+.+ ||
T Consensus       164 iNiGsl~~p~i~~~~~~~~-g~  184 (498)
T COG3104         164 INIGSLIAPIITGLLAINY-GW  184 (498)
T ss_pred             eehHHHHHHHHHHHHHHhh-CH
Confidence            9999999999999999988 53

>PRK15075 citrate-proton symporter; Provisional

Probab=98.94  E-value=4e-08  Score=89.60  Aligned_cols=133  Identities=15%  Similarity=0.075  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHH-HHHH-----HHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCC
Q 017535           93 SFAAMWLELTGFSHEKTAFL-MALF-----VIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLP  166 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~-~~~~-----~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (370)
                      ...|.+.++++.+..+.+.+ .+..     .+...++.++.|+++||+|||+.       ...+..+....... .. +.
T Consensus        36 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-------l~~~~~~~~~~~~l-~~-~~  106 (434)
T PRK15075         36 FYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG-------LIVTLSIMASGTLL-IA-FV  106 (434)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH-------HHHHHHHHHHHHHH-HH-hC
Confidence            45566668888877664433 2221     22334788999999999999976       33333332222222 11 22


Q ss_pred             CCCCh-----hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          167 DDPST-----PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       167 ~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .+...     ...+.+..++.|++.+...+ ....++.|.+|+++|+.+.++.+...+++..+++.+++.+...
T Consensus       107 ~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~  179 (434)
T PRK15075        107 PGYATIGLAAPLLVLLGRLLQGFSAGVELG-GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQW  179 (434)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            11110     01245566778887776666 5678899999999999999999999999888888887776543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.92  E-value=1.1e-07  Score=85.56  Aligned_cols=147  Identities=14%  Similarity=-0.035  Sum_probs=86.7

Q ss_pred             HHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHH--HHHHHHHHHhHHHH-HHHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           81 QGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLM--ALFVIASSLGGLFG-GRMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~--~~~~~~~~ig~~~~-g~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      ..+.....+++. .++|.++++.|.+..+.|++.  ....+...+..++. ++..||.|||+.       .++.+.+...
T Consensus         9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~-------~i~~~~~~~~   81 (390)
T TIGR02718         9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRS-------WVLPMQCLVS   81 (390)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchh-------HHHHHHHHHH
Confidence            334445554444 688999999999999999973  45567776666666 557888887765       2222222111


Q ss_pred             HHHHHHHhC-CCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          157 LAALLLLVL-PDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .....+... +......+ .....+..++......+ ...++..+..+++.++...+.......+|..+++...+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~d~-~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~  159 (390)
T TIGR02718        82 ACLASLALVGPDVAGAGW-AVGLLACASLASATQDI-ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK  159 (390)
T ss_pred             HHHHHHHcCCcchhhHHH-HHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111111 11111122 22233334444444434 4455566666667677777777777788888888888888887


Q ss_pred             h
Q 017535          236 V  236 (370)
Q Consensus       236 ~  236 (370)
                      .
T Consensus       160 ~  160 (390)
T TIGR02718       160 F  160 (390)
T ss_pred             h
Confidence            6

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.92  E-value=1.1e-07  Score=88.10  Aligned_cols=116  Identities=11%  Similarity=-0.079  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh--CC--CCCChhHHHHHHHHHHHH
Q 017535          109 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV--LP--DDPSTPVMHGLVLVVTGL  184 (370)
Q Consensus       109 ~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~g~  184 (370)
                      .+++.++..+..++..++.+++-+|.++|...   .....++.++.......+...  ..  +...+.+......++.++
T Consensus       318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~---~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~  394 (500)
T PRK09584        318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPM---PHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSI  394 (500)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHH
Confidence            45555666666677777777777777666432   222333323222221111111  11  111223456667788888


Q ss_pred             HHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHH
Q 017535          185 FISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (370)
                      +.....| ...+++.+..|++.||+.+|+......++..++..+
T Consensus       395 ge~~~~p-~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~  437 (500)
T PRK09584        395 GELMISG-LGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYV  437 (500)
T ss_pred             HHHHHhH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888 889999999999999999997665555444444333

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.90  E-value=2.2e-07  Score=79.94  Aligned_cols=133  Identities=12%  Similarity=0.053  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...|.+.+.++++..+++++......+..++++..|++.+|+|.|+.       ++++..+.. +.+.+++..+... .+
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-------i~lgL~l~a-vg~~lF~pAa~~~-~y  104 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-------IVLGLLLYA-VGAALFWPAASSK-SY  104 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-------HHHHHHHHH-HHHHHHhhhhhhh-hH
Confidence            45566669999999999999999999999999999999999999976       444444333 3334443223322 35


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ..+++.++..+.+.+..-. ..+.++....+++....-..+...+..+|+.++|.+++.+..+
T Consensus       105 ~~FL~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738         105 GFFLVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence            5567777888888888777 7889999999998888889999999999999999999999885

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.88  E-value=1.1e-08  Score=89.83  Aligned_cols=157  Identities=18%  Similarity=0.195  Sum_probs=89.5

Q ss_pred             ccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHH
Q 017535           70 IKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILA  147 (370)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~  147 (370)
                      +||+.++.+....+..+..++.. .+.|.|+ +..|++..++|.+++...+..++.+++.|.++||++.||.   .++.+
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~---Ll~~i   80 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKH---LLWFI   80 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSH---HHHHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHH---HHHHH
Confidence            45677666655555555556555 7889999 5699999999999999999999999999999999998876   11111


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCC---CccchhccccCCCchhHHHHHHHHHHHHhhch
Q 017535          148 QISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA---TNNPIFAEIVPEKSRTSVYAMDRSFESILSSF  224 (370)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  224 (370)
                      .+..++..+.....+....+.+.  +   +..+..++..+...++   ..-+++.+ . .++.+.-+|=..+.+.+|.++
T Consensus        81 ~~l~~l~~pff~~v~~pll~~n~--~---lg~iig~i~l~~~f~~~~~~~Ea~~er-~-sr~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   81 AILLLLFGPFFIYVFGPLLQSNF--W---LGAIIGGIYLGLVFNAGVPLSEAYAER-V-SRRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             HHHHHTCHHHHHHTHHHHHHTT---H---HHHHHTTTTTTTTTTTHHHHHHHHHHH-H-HHHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHcccchHHHHHHHH-H-HHHhcCCcchHHHHhhHHHHH
Confidence            11111111111111110001111  1   1111111111221210   11122211 2 234666788889999999999


Q ss_pred             hhHHHHHHHHhh
Q 017535          225 APPVVGILAQHV  236 (370)
Q Consensus       225 ~~~~~g~l~~~~  236 (370)
                      +..++|.+.+..
T Consensus       154 ~s~~~G~L~~i~  165 (412)
T PF01306_consen  154 ASLLAGILFNIN  165 (412)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHhheeeeeC
Confidence            999999998854

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK09669 putative symporter YagG; Provisional

Probab=98.88  E-value=8.1e-08  Score=87.87  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=90.0

Q ss_pred             HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hhhCCCchhHHHHHHHHHHHHHHHHHHHHhC
Q 017535           91 ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL----SARFPNSGRIILAQISSLSAIPLAALLLLVL  165 (370)
Q Consensus        91 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (370)
                      ...|++.|+ +.+|+++..+|.++.+..+...+..++.|+++||.    |||++    .  ++.+.+...+...+.+ ..
T Consensus        28 ~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp----~--il~~~~~~~i~~~l~f-~~  100 (444)
T PRK09669         28 VMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP----Y--LLWFAIPFGVVCLLTF-YT  100 (444)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch----h--HHHHHHHHHHHHHHHH-hC
Confidence            346788888 88999999999999999999999999999999994    44444    1  2222222222222222 23


Q ss_pred             CCCC--ChhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          166 PDDP--STPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       166 ~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..+  ...+.+.+..++.+.+...... +..++..+.. ++++|+...+......++|+.+++.+...+....
T Consensus       101 p~~~~~~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669        101 PDFGATGKIIYACVTYILLSLVYTAINV-PYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhhcc-hHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3211  1122333333344444444444 4567777766 4577999999999999999988888777666655

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.87  E-value=2.2e-08  Score=89.90  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhc
Q 017535          110 AFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWN  189 (370)
Q Consensus       110 ~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  189 (370)
                      +.+.+++.+++++|+++.++++||+|||..       +.+..++.+..........  .......+.+..++.|+..+..
T Consensus        63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~-------l~~~~~l~~~~~~~~~~s~--~~~~~e~li~GR~i~Gl~~gl~  133 (485)
T KOG0569|consen   63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNA-------LLLSNLLAVLAALLMGLSK--SAPSFEMLILGRLIVGLACGLS  133 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHH-------HHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHhHHH
Confidence            445667789999999999999999999965       2333333222222222111  1222455777888889888877


Q ss_pred             CCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          190 APATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .. ....++.|+.|.+.||....+......+|..++..++
T Consensus       134 ~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~  172 (485)
T KOG0569|consen  134 TG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG  172 (485)
T ss_pred             HH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence            77 7889999999999999999999998888888775543

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.85  E-value=3.4e-09  Score=92.05  Aligned_cols=148  Identities=12%  Similarity=0.082  Sum_probs=85.9

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHH--------HHHHHHH-HHHHhHHHHHHHHHHHhhhCCCchhHHHHH
Q 017535           78 IVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAF--------LMALFVI-ASSLGGLFGGRMGDFLSARFPNSGRIILAQ  148 (370)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~--------~~~~~~~-~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~  148 (370)
                      ....+++....|+...+...+++..|+.+.....        ...+... +.+.|..+...++|++||++.       .+
T Consensus       310 ~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i-------q~  382 (538)
T KOG0252|consen  310 AGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI-------QL  382 (538)
T ss_pred             HHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH-------HH
Confidence            3444555555566556667777767765433322        2223333 334477788889999999976       33


Q ss_pred             HHHHHHHHHHHHHHHhCCCC-CChhHHHHHHHHHHHHHHHhcCC-CCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          149 ISSLSAIPLAALLLLVLPDD-PSTPVMHGLVLVVTGLFISWNAP-ATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      .+..+..++.+++  ..+.+ ........++..+..++ +-..| ++...+.+|.+|.+.||++.|+....+.+|+.++.
T Consensus       383 ~GF~~~~i~~~~~--~~~y~~~~~~~Gf~v~y~l~~ff-~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~  459 (538)
T KOG0252|consen  383 MGFFIMTIFFFVI--AGPYNQLENTIGFVVLYSLTFFF-GNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGA  459 (538)
T ss_pred             hhHHHHHHHHHHH--cCCcccccccCceeehHHHHHHH-HhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHH
Confidence            3333333222222  22222 11111111111112221 11222 14566778999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q 017535          227 PVVGILAQH  235 (370)
Q Consensus       227 ~~~g~l~~~  235 (370)
                      ....++.++
T Consensus       460 ~~F~~~t~~  468 (538)
T KOG0252|consen  460 FGFLYLTDH  468 (538)
T ss_pred             HHhhHhhhc
Confidence            998888884

>PRK11462 putative transporter; Provisional

Probab=98.84  E-value=2e-07  Score=85.42  Aligned_cols=140  Identities=9%  Similarity=0.068  Sum_probs=92.1

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC-C
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP-S  170 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  170 (370)
                      +|+..|+ +..|+++..+|.++.+.-+...+.-++.|+++||...|.-+++..  ++++.+...+...+ ++..+..+ .
T Consensus        30 ~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~--il~g~i~~~i~~~l-lf~~p~~s~~  106 (460)
T PRK11462         30 LYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPW--VLFGALPFGIVCVL-AYSTPDLSMN  106 (460)
T ss_pred             HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchh--HhHHHHHHHHHHHH-HHhCCCCCcc
Confidence            6788888 889999999999999999999999999999999854332211111  22222222222222 22233211 1


Q ss_pred             h-hHHHHHHHHHHHHHHHhcCCCCccchhccccC-CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          171 T-PVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-EKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       171 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      . .+.+.+..+++..+...... +..++..+..+ +++|++.++......++|+.+++.+...+....
T Consensus       107 ~~~~y~~~~~~~~~~~~t~~~i-py~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~  173 (460)
T PRK11462        107 GKMIYAAITYTLLTLLYTVVNI-PYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLI  173 (460)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1 22334444444555555454 56777777765 678999999999999999888888877777665

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.84  E-value=2.3e-08  Score=85.42  Aligned_cols=127  Identities=19%  Similarity=0.222  Sum_probs=101.8

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 017535          102 TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVV  181 (370)
Q Consensus       102 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (370)
                      .+-+..++|++++...+..++.+++.|.+.||+|+|.+       ++++.++......++.  +.  . ..+.+.+...+
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-------m~~Gl~vmf~sTilFa--fg--~-sy~~l~vAR~L  168 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-------MVAGLFVMFLSTILFA--FG--N-SYPMLFVARSL  168 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-------HHHHHHHHHHHHHHHH--Hc--c-hhHHHHHHHHH
Confidence            45567889999999999999999999999999999977       5555555443333322  21  2 24467788888


Q ss_pred             HHHHHHhcCCCCccchhccccCCCc-hhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535          182 TGLFISWNAPATNNPIFAEIVPEKS-RTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  242 (370)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~  242 (370)
                      .|++.+.... ...+++++.+|.+. |++++|+.-.+..+|-.+||+++|.+.+.. |+...
T Consensus       169 QgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~-Gk~aP  228 (464)
T KOG3764|consen  169 QGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFA-GKSAP  228 (464)
T ss_pred             hhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhc-CCcCc
Confidence            9998877777 77999999998765 699999999999999999999999999998 76655

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.84  E-value=1.6e-08  Score=85.91  Aligned_cols=119  Identities=21%  Similarity=0.184  Sum_probs=89.6

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 017535          102 TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVV  181 (370)
Q Consensus       102 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (370)
                      .+.+....|++.+.+.++..+.++..|.++||+|||..       +.+++ ++..+ ....+..   ..+...+.+..+.
T Consensus        63 ~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-------ll~c~-~~va~-s~ll~~~---S~~F~afv~aR~l  130 (451)
T KOG2615|consen   63 DGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-------LLACL-IGVAL-SYLLWAL---SRNFAAFVLARFL  130 (451)
T ss_pred             ccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-------HHHHH-HHHHH-HHHHHHH---HHHHHHHHHHHHh
Confidence            34456778899999999999999999999999999965       23332 22222 2222211   1223334445788


Q ss_pred             HHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          182 TGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      .|++-+...  +..++++|+++++.|+.+++.++....+|-.+||.++|++..
T Consensus       131 ~Gi~kgnl~--v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  131 GGIFKGNLS--VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             hhhccCchH--HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            888776544  468999999999999999999999999999999999999887

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.82  E-value=1.8e-07  Score=87.07  Aligned_cols=149  Identities=11%  Similarity=0.060  Sum_probs=86.8

Q ss_pred             HHHHHHhhhhhh-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHH---
Q 017535           77 IIVAQGVTGSFP-WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL---  152 (370)
Q Consensus        77 ~~~~~~~~~~~~-~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~---  152 (370)
                      .+.+..+..... +....|.+.+++..|.+... .....+.++..+++.+++.++.||+|||+.       ++.+..   
T Consensus       299 ~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-------ll~s~~~m~  370 (513)
T KOG0254|consen  299 GLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL-------LLFGAAGMS  370 (513)
T ss_pred             HHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH-------HHHhHHHHH
Confidence            344444444444 33336788888887877543 444445577788888888999999999976       222222   


Q ss_pred             HHHHHHHHHHHhCCCC-----C-ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhh
Q 017535          153 SAIPLAALLLLVLPDD-----P-STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAP  226 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (370)
                      ++..............     . ..+.+...+++...+.. ...| +.+.+..|.+|.+.|+.+.++...+..+...+-.
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~-g~g~-v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~  448 (513)
T KOG0254|consen  371 ICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAI-GWGP-VPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLIS  448 (513)
T ss_pred             HHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhc-cccc-chhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHH
Confidence            2221111221111111     1 11222233333333333 3344 6678889999999999999999999888876655


Q ss_pred             HHHHHHHHh
Q 017535          227 PVVGILAQH  235 (370)
Q Consensus       227 ~~~g~l~~~  235 (370)
                      ...-.+.+.
T Consensus       449 ~~~~~~~~~  457 (513)
T KOG0254|consen  449 FFFPFITEA  457 (513)
T ss_pred             HHHHHHHHh
Confidence            544444444

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.80  E-value=1.1e-07  Score=88.79  Aligned_cols=121  Identities=21%  Similarity=0.198  Sum_probs=95.2

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  179 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (370)
                      +....+.....+..+++.++.++|.++.|.++||+|||+.       ...+..+..+.. +... +   ..+++.+.+..
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~-------~~~~~~~~~i~~-~~~a-~---a~~~~~~~~~R  178 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPV-------LLVSLLLFIIFG-ILTA-F---APNYWMFLIFR  178 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHH-------HHHHHHHHHHHH-HHHH-H---hCcHHHHHHHH
Confidence            4456677788888889999999999999999999999976       333333333222 2111 1   22366788899


Q ss_pred             HHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      ++.|++.+.... +...++.|.++++.|+.+..+ ..+...++.+++...+++..
T Consensus       179 fl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~  231 (521)
T KOG0255|consen  179 FLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR  231 (521)
T ss_pred             HHHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            999999888777 889999999999999999999 88888889888888888776

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.75  E-value=2.5e-07  Score=85.40  Aligned_cols=149  Identities=18%  Similarity=0.168  Sum_probs=87.1

Q ss_pred             hccchHHHHHHHHHhhhhhh-HHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchh
Q 017535           69 VIKIPSFQIIVAQGVTGSFP-WSAL----SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGR  143 (370)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~  143 (370)
                      .+++++++..+..+++.... |..+    ..++....+.|-+ ....++.....++..++.++.|+++|.+|||..    
T Consensus        36 ~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~----  110 (599)
T PF06609_consen   36 YYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF----  110 (599)
T ss_pred             ceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH----
Confidence            34566655555444443332 2221    2234444778876 456677777888999999999999999999976    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhc
Q 017535          144 IILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  223 (370)
                         .+++.++.++ ..+... ..   .+...+.....+.|++.|...  .....++|..|.+.|+.+.++.....-....
T Consensus       111 ---~i~g~~l~vv-G~Iv~a-tA---~~~~~~iag~~l~GvgaG~~~--~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~  180 (599)
T PF06609_consen  111 ---FIIGSLLGVV-GSIVCA-TA---QNMNTFIAGMVLYGVGAGVQE--LAALAISELVPNKWRGLGLAIASIPFIITTW  180 (599)
T ss_pred             ---HHHHHHHHHh-HHHHhh-cC---CcHHHHHHHHHHHHHhhHHHH--HHHHHHHHhcccchhhhHhHHHHHHHHhhhc
Confidence               3333333332 222211 11   123335555666666655544  3355679999999998877766654444444


Q ss_pred             hhhHHHHHH
Q 017535          224 FAPPVVGIL  232 (370)
Q Consensus       224 ~~~~~~g~l  232 (370)
                      +++.+...+
T Consensus       181 ~~~~ia~~~  189 (599)
T PF06609_consen  181 ISPLIAQLF  189 (599)
T ss_pred             ccHHHHHHh
Confidence            555554433

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.74  E-value=2.7e-07  Score=75.95  Aligned_cols=140  Identities=15%  Similarity=0.180  Sum_probs=92.5

Q ss_pred             hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHH
Q 017535           83 VTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL  162 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (370)
                      ......|.+..|.|.+-+.+|+|.++...+.....++..+| ++.|.+.|+++.+..       +.++.+..........
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~-------l~iG~~~~~~GY~~~~   84 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVV-------LLIGAVLGFVGYGLLW   84 (250)
T ss_pred             HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHH-------HHHHHHHHHHHHHHHH
Confidence            33344466667778877999999999999999989988875 888999999998854       4455444443333333


Q ss_pred             HhCCCC--CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          163 LVLPDD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       163 ~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      ......  ....|.+.+..++.+.+..+... .......+.+|. +||++.|+.-....+++++-..+...+
T Consensus        85 l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~t-a~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~  154 (250)
T PF06813_consen   85 LAVSGRIPSLPVWLMCLFLFLGGNSSCWFNT-ASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF  154 (250)
T ss_pred             HHHhCccCccchHHHHHHHHHHcccHHHhhh-HHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence            322222  13355566666666665555443 223334456774 699999999998888887765554433

>PRK09848 glucuronide transporter; Provisional

Probab=98.73  E-value=7.9e-07  Score=81.50  Aligned_cols=126  Identities=17%  Similarity=0.233  Sum_probs=73.1

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC--C
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD--P  169 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  169 (370)
                      .|++.|+ +..|+++.++|.+..+..+..++..++.|+++||.++|+.++...  +..+.+........++. .+..  .
T Consensus        29 ~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~  105 (448)
T PRK09848         29 LFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF--LLFGTAPLMIFSVLVFW-VPTDWSH  105 (448)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH--HHHHHHHHHHHHHHHHh-CcCCCCc
Confidence            5677788 678999999999999999999999999999999986554322111  12222222212222221 2211  1


Q ss_pred             -ChhHHHHHHHHHHHHHHHhcCCCCccchhcccc-CCCchhHHHHHHHHHHHHhh
Q 017535          170 -STPVMHGLVLVVTGLFISWNAPATNNPIFAEIV-PEKSRTSVYAMDRSFESILS  222 (370)
Q Consensus       170 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~  222 (370)
                       ...+...+..++.+.+.+...+ +..++..+.. ++++|....+......++++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~  159 (448)
T PRK09848        106 SSKVVYAYLTYMGLGLCYSLVNI-PYGSLATAMTQQPQSRARLGAARGIAASLTF  159 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHHhcc-cHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence             1122233344455655555555 4555555544 34567777666655444443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.72  E-value=5e-07  Score=81.12  Aligned_cols=108  Identities=20%  Similarity=0.204  Sum_probs=73.9

Q ss_pred             HHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC----hhHHHHHHHHHHHHHHHhcCCCC
Q 017535          118 IASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS----TPVMHGLVLVVTGLFISWNAPAT  193 (370)
Q Consensus       118 ~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~  193 (370)
                      ++..++.++.|+++||+|||+.       ..++.++..... ......++...    ..+.+.+..++.|++.+...+ .
T Consensus        46 ~~~~i~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~-~  116 (394)
T TIGR00883        46 LARPLGAIVFGHFGDRIGRKKT-------LVITLLMMGIGT-LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWG-G  116 (394)
T ss_pred             HHhhhHHHHhhhhhhhhhhHHH-------HHHHHHHHHHHH-HHHhhCCChhhhHHHHHHHHHHHHHHHHhhcccccc-c
Confidence            3445788999999999999976       333333332222 22211221111    012345566777887777777 7


Q ss_pred             ccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          194 NNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       194 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      ..+++.+..|+++|+...++.+....+|..+++.+.+.+..
T Consensus       117 ~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~  157 (394)
T TIGR00883       117 AALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY  157 (394)
T ss_pred             cHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999888776654

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.70  E-value=9.5e-08  Score=86.95  Aligned_cols=137  Identities=18%  Similarity=0.181  Sum_probs=95.9

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGD----FLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD  167 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (370)
                      .|++.|+ +..|+++...|++..+..+..++..++.|+++|    |+|||++.      +.++.....+...+++...+.
T Consensus        22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~------~l~g~i~~~~~~~llf~~~p~   95 (428)
T PF13347_consen   22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW------ILIGAILLALSFFLLFSPPPA   95 (428)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE------eehhhHHHHHHHHHhhccccc
Confidence            5777777 888999999999999999999999999999999    78888772      233333333222222211121


Q ss_pred             CC---ChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          168 DP---STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-EKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       168 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..   .....+.+..+++.++...... +..++..+..+ +++|....+....+..+|..+...+.+.+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~l~~~~~t~~~i-~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~  167 (428)
T PF13347_consen   96 GLSFTAKLVWLFVFYILFDIAYTFVQI-PYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF  167 (428)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhhhhccC-chhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            11   1122234444555666666555 66888888886 468999999999999999988888888888766

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.69  E-value=1.5e-06  Score=77.54  Aligned_cols=144  Identities=15%  Similarity=0.170  Sum_probs=101.5

Q ss_pred             HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC-
Q 017535           91 ALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD-  168 (370)
Q Consensus        91 ~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  168 (370)
                      ...|+..|+ +..|+++..+|.++.+.=+..++.-++.|.++||..+|+-+++...  +.+.+... +.+.+.+..++. 
T Consensus        31 ~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~l--L~g~ip~~-i~~~l~F~~p~~~  107 (467)
T COG2211          31 VVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWL--LWGAIPFA-IVAVLLFITPDFS  107 (467)
T ss_pred             HHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHH--HHHhHHHH-HHHHHHHcCCCcc
Confidence            336888888 8899999999999999999999999999999998665544322221  22212222 222222223321 


Q ss_pred             -CChhHHHHHHHHHHHHHHHhcCCCCccchhccccC-CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          169 -PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP-EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       169 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                       ...+...++..++.+++...... +..++..+..+ +++|.+..+.-..+.++|+.+...+.+.+....++
T Consensus       108 ~~~k~~ya~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~  178 (467)
T COG2211         108 MTGKLIYALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGG  178 (467)
T ss_pred             cCcchHHHHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             23345566667777777776665 66777777654 57899999999999999999999999999888733

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.66  E-value=3.3e-06  Score=75.37  Aligned_cols=156  Identities=15%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             HHHHhhhccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCch
Q 017535           63 IQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSG  142 (370)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~  142 (370)
                      .++++..++++.+...+...++.....++-..+..|+...|+++...|.+-+...+.++.|.++..++.+|+|..+.   
T Consensus       249 ~~~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~---  325 (432)
T PF06963_consen  249 IRGWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA---  325 (432)
T ss_pred             hccHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh---
Confidence            34455667777766655555444443333456678887779999999999999999999999999999999997765   


Q ss_pred             hHHHHHHHHH---HHHHHHHHHHHhCCCCC---ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHH
Q 017535          143 RIILAQISSL---SAIPLAALLLLVLPDDP---STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRS  216 (370)
Q Consensus       143 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  216 (370)
                          ...+..   .++......+ ..+..+   .....+.....+.=++.-..-. ...-+++|.+|+++||+..|+.+.
T Consensus       326 ----G~~~l~~q~~~L~~~v~~~-~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL-~~~qi~Qe~V~~~~Rg~v~gvq~s  399 (432)
T PF06963_consen  326 ----GLWSLWWQWVCLALCVVSF-WAPGSPFSSISAYLLLGGIALSRIGLWSFDL-AVTQIMQENVPESERGAVSGVQNS  399 (432)
T ss_pred             ----HHHHHHHHHHHHHHHHHHH-hcCCCCchhhHHHHHHHHHHHHHHHHHhhhH-HHHHhhcccCCHHHhhHHHHHHHH
Confidence                222222   1111111222 233322   1112222222222222222233 556778899999999999999999


Q ss_pred             HHHHhhchhhH
Q 017535          217 FESILSSFAPP  227 (370)
Q Consensus       217 ~~~~~~~~~~~  227 (370)
                      ..++...+.-.
T Consensus       400 l~~lf~ll~~~  410 (432)
T PF06963_consen  400 LQSLFELLSFV  410 (432)
T ss_pred             HHHHHHHHHHH
Confidence            99988766543

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.63  E-value=3.6e-11  Score=110.22  Aligned_cols=133  Identities=18%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH---HHhCCCCC
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL---LLVLPDDP  169 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  169 (370)
                      .|.+.+++..+.+..  -.......+...++.+++.++.||+|||+.       .+++......+...+   .......+
T Consensus       274 ~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~  344 (451)
T PF00083_consen  274 YYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-------LIIGLLLMAICSLILGIIFFLGVSSS  344 (451)
T ss_pred             ccccccccccccccc--cccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccc
Confidence            455666677777766  222234456677788888899999999976       233322222221111   11112211


Q ss_pred             ---ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          170 ---STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       170 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                         .........++...+..++ .+ ..+.+..|.+|.+.|+++.++...+..+++++++.+...+.+..
T Consensus       345 ~~~~~~~i~~~~l~~~~~~~g~-~~-~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~  412 (451)
T PF00083_consen  345 SWWSILSIVFLALFFAFFSLGW-GP-LPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL  412 (451)
T ss_pred             cccccccceeeeeccccccccc-cc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence               1111112222222222222 34 55788899999999999999999999999999998888777765

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.63  E-value=6e-07  Score=79.90  Aligned_cols=164  Identities=12%  Similarity=0.076  Sum_probs=109.0

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhC
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  138 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  138 (370)
                      ...+.+..+++.++...+++..........+.. +++=-++++++..+...|........+-++.-++.+++..|+|+-+
T Consensus       358 ~~v~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~  437 (618)
T KOG3762|consen  358 SSVLADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN  437 (618)
T ss_pred             HHHHHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc
Confidence            345666667788877444333333333333333 4553444888877777786666667788888889999999999887


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHH
Q 017535          139 PNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE  218 (370)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  218 (370)
                      .       +.+++  .+...=++++.+..+   +|.++.+-++.|+..+.... +..+++....||+.++++.++.....
T Consensus       438 v-------~~lgL--a~~~~Rf~~~S~L~n---~W~vLPieilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f  504 (618)
T KOG3762|consen  438 V-------MYLGL--ACNVGRFLYYSYLQN---PWMVLPIEILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIF  504 (618)
T ss_pred             e-------eeehh--hHHHHHHHHHHHhcC---chheeeHHHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHh
Confidence            6       22221  111111222222222   44566666777887777776 77889999999999999999977654


Q ss_pred             -HHhhchhhHHHHHHHHhh
Q 017535          219 -SILSSFAPPVVGILAQHV  236 (370)
Q Consensus       219 -~~~~~~~~~~~g~l~~~~  236 (370)
                       .+|-.+|++++|.+.+.+
T Consensus       505 ~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  505 HGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             cccCcchhhhhhhhhheee
Confidence             567799999999999887

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.63  E-value=1.4e-06  Score=77.86  Aligned_cols=124  Identities=22%  Similarity=0.229  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 017535           91 ALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS  170 (370)
Q Consensus        91 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (370)
                      ...++|.|++..|+|..++|.+.+...+..+++.++.|+++||.++++.      ...+..+++........  ..  ..
T Consensus        21 ~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~------~l~~~~l~~~~~~~~~~--~~--~~   90 (400)
T PF03825_consen   21 FLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKR------ILALLSLLSALALLLLA--FS--SS   90 (400)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH------HHHHHHHHHHHHHHHHH--Hh--cc
Confidence            3468899999999999999999999999999999999999999865543      12222222222111111  11  22


Q ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHH
Q 017535          171 TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       171 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (370)
                       .+.+..+.++..+......| ...++..+...  .++.-+|-....+.+|-.++...
T Consensus        91 -f~~~~~~~~l~~~~~~p~~p-l~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~  144 (400)
T PF03825_consen   91 -FWWLFVIMLLFSFFFSPTMP-LSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA  144 (400)
T ss_pred             -HHHHHHHHHHHHHHHccHHH-HHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence             22334444555555554455 55555555443  24555666666666666665444

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.62  E-value=3.1e-07  Score=80.15  Aligned_cols=123  Identities=19%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHH-HHHHhCCCCC-ChhHHHHHHHHH
Q 017535          104 FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAA-LLLLVLPDDP-STPVMHGLVLVV  181 (370)
Q Consensus       104 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~  181 (370)
                      +++...+.+.....++.++|+++.||+.||+|||+..       ...+++.+++.+ ..+....+.+ ...+.+....++
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-------G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~  153 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-------GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFL  153 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-------hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHH
Confidence            5667788888888999999999999999999999872       222222221221 1111111122 224556777889


Q ss_pred             HHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          182 TGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       182 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      +|++.|.=+| +..+..+|....+.||.-.+....++.+|...|.++.-.+..
T Consensus       154 LGiGIGGDYP-lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~  205 (538)
T KOG0252|consen  154 LGIGIGGDYP-LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSA  205 (538)
T ss_pred             hhccccCCCc-chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHH
Confidence            9999999999 888899998888889999888877777776666555444433

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.58  E-value=1.3e-06  Score=80.17  Aligned_cols=150  Identities=16%  Similarity=0.088  Sum_probs=103.9

Q ss_pred             HHHHHHHHhhhhhhHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHH
Q 017535           75 FQIIVAQGVTGSFPWSAL----SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQIS  150 (370)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~  150 (370)
                      |...+..++.....+++.    .+.+.+.++++.+..+++++.++......+..++.+.+.||+|-|..       .+.+
T Consensus        45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-------~i~G  117 (509)
T KOG2504|consen   45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-------MIAG  117 (509)
T ss_pred             eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-------HHHH
Confidence            444444555555444444    23455558899999999999999999999999999999999999976       3444


Q ss_pred             HHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          151 SLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      .++......+..  +.  ...+.++...-++.|++.+..+. ....++...+ +++|+.++|+......+|..+-|.+..
T Consensus       118 ~~v~~~g~~lss--F~--~~i~~l~lt~gvi~G~G~~~~~~-paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~  191 (509)
T KOG2504|consen  118 GLVAALGLLLSS--FA--TSLWQLYLTFGVIGGLGLGLIYL-PAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLK  191 (509)
T ss_pred             HHHHHHHHHHHH--HH--hhHHHHHHHHHHHhhccchhhhc-chhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHH
Confidence            443332222211  21  22233445555666777777666 5566666555 456999999999999999999999999


Q ss_pred             HHHHhhcC
Q 017535          231 ILAQHVYG  238 (370)
Q Consensus       231 ~l~~~~~g  238 (370)
                      .+.+.. |
T Consensus       192 ~l~~~~-G  198 (509)
T KOG2504|consen  192 YLLSKY-G  198 (509)
T ss_pred             HHHHHh-C
Confidence            999987 5

>PTZ00207 hypothetical protein; Provisional

Probab=98.57  E-value=1.6e-06  Score=80.61  Aligned_cols=203  Identities=14%  Similarity=0.065  Sum_probs=120.7

Q ss_pred             HHhhhccchHHHHHHHHHhhhhhh-HHHHHHHHHHHHHh-CCCHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCC
Q 017535           65 EAKSVIKIPSFQIIVAQGVTGSFP-WSALSFAAMWLELT-GFSHEK--TAFLMALFVIASSLGGLFGGRMGDFLSARFPN  140 (370)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-g~s~~~--~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~  140 (370)
                      .+++.+++..+|+++..++++... ..++.-+..+.+.+ |.+.+.  ..++.++.++++.+|++.+|.+.....+|+..
T Consensus       345 t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~  424 (591)
T PTZ00207        345 TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAE  424 (591)
T ss_pred             hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccc
Confidence            566777788888776666555544 44445666777777 773322  33367888999999999999999444444311


Q ss_pred             --chhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHH
Q 017535          141 --SGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFE  218 (370)
Q Consensus       141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  218 (370)
                        ..+...+.+..+ +.+...++++..+. .    .+.+..++.|++.|...+ +....+.|++. ++-|+-+-+.....
T Consensus       425 ~r~prt~~l~~~~~-~~~~~lll~~~~p~-~----~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~  496 (591)
T PTZ00207        425 DRVPITIALFIPSV-CIITMLTLFLTLPK-A----ALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGS  496 (591)
T ss_pred             cccchhHHHHHHHH-HHHHHHHHHHHCCc-c----HhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHH
Confidence              112222222222 22222233333221 1    256667777777777777 77888999999 77888888877777


Q ss_pred             HHhhchh-hHHHHHHHHhhcCCCCCCCCCCccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 017535          219 SILSSFA-PPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAIGIPMALCCFIYSFLYST  287 (370)
Q Consensus       219 ~~~~~~~-~~~~g~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (370)
                      -+|..+- -.+.|.+.|+-.. .          .....-.+.+.++..+.++.++. +.+++....+..+
T Consensus       497 pigs~~~n~~l~G~~Yd~ea~-k----------~~~~~C~G~~C~~~~~~v~~~~~-~~g~~~s~~l~~R  554 (591)
T PTZ00207        497 VLSAIFLNRLLYGEWYTQQAD-K----------LGQDVCTERVCVVMPLAFLLGLS-FLAFITSTYVHLQ  554 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-h----------CCCCeeCCceeeHhHHHHHHHHH-HHHHHHHhheeee
Confidence            7777554 5677888876510 0          00112235556777777665444 3333333333333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.55  E-value=2.1e-07  Score=84.34  Aligned_cols=226  Identities=15%  Similarity=0.076  Sum_probs=115.3

Q ss_pred             CccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-CccccCcccchhhhhhHHHHhhhccchHHHHHHH
Q 017535            2 APMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN-SDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA   80 (370)
Q Consensus         2 ~g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
                      .++.+.+..++|+.|.+.+++.++..+..++..+|.+..+..+.. ..++.........++..+.+++.++.|..+...+
T Consensus       143 l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~  222 (433)
T PF03092_consen  143 LSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPIL  222 (433)
T ss_pred             hhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            356777888999999999888777776666666652111111100 0000001111113566677778888887554433


Q ss_pred             -HHhhhhhhHHHHHHHHHHH--HHhC---CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHH
Q 017535           81 -QGVTGSFPWSALSFAAMWL--ELTG---FSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSA  154 (370)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~~--~~~g---~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~  154 (370)
                       ..++.........-...|+  ...+   +++...+.+..+..++.++|..+......+..-|+.       .....++.
T Consensus       223 ~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~-------~~~t~~~~  295 (433)
T PF03092_consen  223 FFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRI-------FVVTTLVS  295 (433)
T ss_pred             HHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-------HHHHHHHH
Confidence             1111111110000001112  3345   788888877755566666666555443332222211       11111111


Q ss_pred             HHHHHHHHHhCCC------CCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHH
Q 017535          155 IPLAALLLLVLPD------DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       155 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (370)
                      ......-+.....      -+..+ ....--++..+....... +...++++..|+...|+.+|+...+.++|..++..+
T Consensus       296 ~~~~l~~~~lv~~~n~~~Gi~d~~-f~lgd~~l~~~~~~i~~m-P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~l  373 (433)
T PF03092_consen  296 VLASLFDLLLVTRWNLDLGIPDQW-FALGDTILEEVIGMIAFM-PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTL  373 (433)
T ss_pred             HHHhcccEEEEEEEeeeeCcCCeE-EEEEhHHHHHHHHHHHHH-HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            1111110000000      00101 111111222222222222 346778899999999999999999999999999999


Q ss_pred             HHHHHHhh
Q 017535          229 VGILAQHV  236 (370)
Q Consensus       229 ~g~l~~~~  236 (370)
                      +..+.+..
T Consensus       374 g~~l~~~~  381 (433)
T PF03092_consen  374 GAFLMELF  381 (433)
T ss_pred             HHHHHHHc
Confidence            99988887

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.54  E-value=7.7e-06  Score=77.41  Aligned_cols=142  Identities=18%  Similarity=0.168  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHHHHHHHHHHHHHHHH-hC
Q 017535           89 WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLSAIPLAALLLL-VL  165 (370)
Q Consensus        89 ~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  165 (370)
                      |++.+.+..|+ +.+|++...+..++..+....-+..+++|+++|++ |+++.       +.++.++..+...++.+ ..
T Consensus         4 YGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-------Il~~~ii~~lG~~llai~a~   76 (654)
T TIGR00926         4 YGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-------ILYLSIVYVVGHALLSFGAI   76 (654)
T ss_pred             eecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHhccC
Confidence            45556667777 77999999998888888777788889999999985 55544       23332222222211111 11


Q ss_pred             CCC--CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCC---chhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          166 PDD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       166 ~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      +..  .......++.+.+...+.|..-| +..+...+.++++   .+-..+.+..+..++|+.+++.+.+++.+..++
T Consensus        77 ~~~~~~~~~~~~l~gLaLia~G~GgiKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~  153 (654)
T TIGR00926        77 PSSGHPLHDLLDLLGLALIALGTGGIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC  153 (654)
T ss_pred             cccccchHHHHHHHHHHHHHhhcccccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            111  11122344556666677787778 8888888888653   366788888889999999999999988766533

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.54  E-value=2.3e-07  Score=84.39  Aligned_cols=124  Identities=15%  Similarity=0.021  Sum_probs=94.4

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  179 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (370)
                      ++.++...+.+.+.+++.++.+++.+.++.+.||+...+.        +..+.++..+..++-..    ..+.+.+.+..
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~--------l~~~~~~w~~~~~~~~~----~~s~~~~ialr  141 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG--------LSVSGILWGLFGFLTAA----VHSFPGLIALR  141 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH--------HHHHHHHHHHHHHHHHH----HhhhHHHHHHH
Confidence            4567778889999999999999999999999999983332        22212211111111111    12244578889


Q ss_pred             HHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ++.|++.+...| ....++...+.++++|..+|+.+....+|+++|+.+...+....
T Consensus       142 ~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~  197 (495)
T KOG2533|consen  142 FLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN  197 (495)
T ss_pred             HHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc
Confidence            999999999999 88999999999999999999999999999999999888876543

>TIGR00889 2A0110 nucleoside transporter

Probab=98.51  E-value=2.1e-06  Score=77.76  Aligned_cols=55  Identities=16%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             hhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           85 GSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        85 ~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      .+..+++. .+++.++ ++.|++..+.|++.+...++.++++++.|+++||+++||.
T Consensus        14 ~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~   70 (418)
T TIGR00889        14 QWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQK   70 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            33344444 6778888 7799999999999999999999999999999999976543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.51  E-value=3.2e-06  Score=78.80  Aligned_cols=110  Identities=16%  Similarity=0.224  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHH
Q 017535          108 KTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFIS  187 (370)
Q Consensus       108 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  187 (370)
                      +.+++.+...++..++.++.|+++|++|||+.       +.++.+...+...+... .    ..+..+.+..++.|++.|
T Consensus        90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-------l~~~~~~~~iG~ii~~~-a----~~~~~l~~GR~l~G~g~G  157 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKKT-------LLLAVVLFLIGAIIIAL-A----PSWYQLIVGRILTGLGVG  157 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHH-h----hhHHHHHHHHHHhccchh
Confidence            45899999999999999999999999999976       33333333222222221 1    135668888899999888


Q ss_pred             hcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHH
Q 017535          188 WNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  231 (370)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  231 (370)
                      .... +...++.|..|++.||...++.+....+|..++ .+.+.
T Consensus       158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~  199 (513)
T KOG0254|consen  158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINY  199 (513)
T ss_pred             hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhh
Confidence            8887 889999999999999999999999888777776 33333

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=98.48  E-value=2.8e-06  Score=72.63  Aligned_cols=133  Identities=17%  Similarity=0.161  Sum_probs=85.1

Q ss_pred             HHHHH--HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           95 AAMWL--ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        95 ~~~~~--~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ...++  ..+|+++.+.|.+++..++.+.+......+..+|.... .    .........++++..  .++...  .. .
T Consensus       283 t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~-~----~a~l~~~l~~~vP~~--llls~~--~~-~  352 (451)
T KOG2615|consen  283 TVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGN-I----KAVLLFSLLLIVPAF--LLLSLA--RT-P  352 (451)
T ss_pred             hHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccc-h----hhHHHHHHHHHHHHH--HHHhcc--cc-c
Confidence            34444  56899999999988777776666555555554443211 1    001222223333322  222122  22 2


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      ..+.+...+..+......+ ....++....|+++||+++|+....+.++-++||.+.|.+....-+
T Consensus       353 ~~l~~~s~l~sf~~A~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~  417 (451)
T KOG2615|consen  353 VVLYLGSTLKSFSTASVVT-CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQG  417 (451)
T ss_pred             hhhhHHHHHHHHHHHHhhH-HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecC
Confidence            2355555666666666566 6778888889999999999999999999999999999988776533

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.48  E-value=7.8e-05  Score=63.98  Aligned_cols=124  Identities=19%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHH
Q 017535           99 LELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLV  178 (370)
Q Consensus        99 ~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (370)
                      ++++|++..+++.++....+.+++...+.|.++||+|||+.       +++.+++-. +.++.-    ..+ ....+.+.
T Consensus        61 Y~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~-------cl~~cily~-~scl~k----~~~-~~~~L~~G  127 (354)
T PF05631_consen   61 YESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKA-------CLLFCILYS-LSCLTK----HSS-NYPVLLLG  127 (354)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH-------HHHHHHHHH-HHHHHH----hcc-ccHHHHHH
Confidence            37899999999999999999999999999999999999976       344333322 222211    112 24456677


Q ss_pred             HHHHHHHHHhcCCCCccc-hhcc----ccCCCchhHHHHHHHHHHH-HhhchhhHHHHHHHHhh
Q 017535          179 LVVTGLFISWNAPATNNP-IFAE----IVPEKSRTSVYAMDRSFES-ILSSFAPPVVGILAQHV  236 (370)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~-~~~~----~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~g~l~~~~  236 (370)
                      .++.|++...... ..=+ ++.|    -+|++..+...+...+..+ +...++..+.-++.+..
T Consensus       128 RvlgGiaTSLLfS-~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~  190 (354)
T PF05631_consen  128 RVLGGIATSLLFS-AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWF  190 (354)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHh
Confidence            7777776655443 2222 2222    2344444555554443323 33344444444556655

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.47  E-value=2.6e-05  Score=66.66  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=81.7

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  179 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (370)
                      ...|.+..+..++......+..+++...|.++|++|||+.       ..+........   .+. ....+ +...+.+..
T Consensus       106 ~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~-------f~~T~l~t~v~---~~i-s~~sp-nf~~L~~f~  173 (528)
T KOG0253|consen  106 EVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKG-------FNLTFLVTGVF---GVI-SGASP-NFASLCVFR  173 (528)
T ss_pred             hhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchh-------hhhhHHHHHHH---HHh-hcCCC-CeehhhHHH
Confidence            5678888999999999999999999999999999999986       22222222211   111 11122 233356666


Q ss_pred             HHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.|++.|. .| ...++-.+..|..+|+.-+-+. +...+|..+...+.-.++...
T Consensus       174 ~l~~~g~gg-~p-v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~  227 (528)
T KOG0253|consen  174 ALWGFGVGG-LP-VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNF  227 (528)
T ss_pred             HHHhccCCC-cc-HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            777777776 66 6677778888888787766665 666677766665554444444

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=98.46  E-value=8e-05  Score=68.17  Aligned_cols=124  Identities=15%  Similarity=0.004  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHH---HhCCC-CCChhHHHHHHHHHHHH
Q 017535          109 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL---LVLPD-DPSTPVMHGLVLVVTGL  184 (370)
Q Consensus       109 ~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~g~  184 (370)
                      .+++.++..+..++.+++.+++-.|..+|+..........+++++......++.   ..... ...+.+.+....++.++
T Consensus       310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~  389 (493)
T PRK15462        310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF  389 (493)
T ss_pred             HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence            445556666666666777777766664432211222223333333222221111   11111 11233445666677788


Q ss_pred             HHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          185 FISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +--...| ...+++.+..|++.+|..+|+....   ++++++.+.|++.+..
T Consensus       390 gEl~~sP-vgls~~~~laP~~~~g~~mg~w~l~---~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        390 AELFIDP-VAMSQITRIEIPGVTGVLTGIYMLL---SGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHHCh-HHHHHHHHhChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence            8778888 8899999999999999999998432   2345555566665554

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.45  E-value=1.6e-05  Score=74.40  Aligned_cols=121  Identities=19%  Similarity=-0.041  Sum_probs=68.4

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST-PVMHGLV  178 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  178 (370)
                      ..+|.+......+   .+.....+....+...|++|||..       ...+..+..+. .+.....+..... .......
T Consensus       346 ~~lg~~~~~~~~~---~~~~~~p~~~~~~~~~~~~gR~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  414 (521)
T KOG0255|consen  346 SGLGGNIYLNFTL---SGLVELPAYFRNGLLLPEFGRRPP-------LFLSLFLAGIG-LLLFGWLPDDLGGWLHWILPL  414 (521)
T ss_pred             hhcCchHHHHHHH---HHHHHhhHHHHHHHHHHHhCcHHH-------HHHHHHHHHHH-HHHHHHhhccchhHHHHHHHH
Confidence            4455554333332   233556666677899999988865       23333332222 2222222222221 1111111


Q ss_pred             HHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          179 LVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       179 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      +...++..+  .. ..+.+..|.+|...|..+.+..+....++++++|.+.-....
T Consensus       415 ~~~~~~~~~--~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  415 LGKFFIGSA--FN-LIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHH--HH-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            122222222  22 347788999999999999999999999999999988755444

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.41  E-value=3.4e-05  Score=65.82  Aligned_cols=128  Identities=16%  Similarity=0.055  Sum_probs=92.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHH
Q 017535           96 AMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMH  175 (370)
Q Consensus        96 ~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (370)
                      +.+-+++|+|...+|++.++..++..+.+++..++.+|+|.++.       ...+.++.. . ....=..   . ....+
T Consensus        36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-------l~~~Llli~-~-G~~iR~~---~-~~~~L  102 (395)
T COG2807          36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-------LFLALLLIA-A-GILIRSL---G-GLPLL  102 (395)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-------HHHHHHHHH-H-HHHHHhc---c-cHHHH
Confidence            34447799999999999999999999999999999999998875       232222221 1 1111111   1 13334


Q ss_pred             HHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          176 GLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       176 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      +....+.|.+.+.... .....+-+.+|++ .+..+|++....++++++++.+.-.+.++.+|
T Consensus       103 ~~gt~l~G~gIav~nV-LLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~g  163 (395)
T COG2807         103 FLGTLLAGAGIAVINV-LLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGG  163 (395)
T ss_pred             HHHHHHHHhhHHHHHH-hhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence            5555556666665555 6678888888765 89999999999999999999998888887644

>TIGR00788 fbt folate/biopterin transporter

Probab=98.40  E-value=1.4e-05  Score=73.39  Aligned_cols=143  Identities=13%  Similarity=0.063  Sum_probs=87.5

Q ss_pred             hhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---hhCCCchhHHHHHHHHHHHHHHH
Q 017535           83 VTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS---ARFPNSGRIILAQISSLSAIPLA  158 (370)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~~~  158 (370)
                      +.....+.....++.++ +++|++..+.+.+.+...+...+-.+ .|.++||++   +||.    . .+++..++.. ..
T Consensus        36 ~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr----~-~l~~~~~l~~-~~  108 (468)
T TIGR00788        36 FVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKR----W-YLVLSGLLGS-AI  108 (468)
T ss_pred             HHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccch----H-HHHHHHHHHH-HH
Confidence            33344433335566777 67899999999988888888888544 999999996   2222    1 1222222221 11


Q ss_pred             HHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHH---HHHHHHHHHhhchhhHHHHHHHHh
Q 017535          159 ALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVY---AMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ....  ....+.......+.+++.+++.+...+ ..-++..|..+ +.++...   ++.....++|..+++.+.|.+.+.
T Consensus       109 ~~~~--l~~~~~~~~~~~~~~~l~~~~~a~~dv-~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~  184 (468)
T TIGR00788       109 LYGL--LPGKVSSAKVAAAFIFLAALAKALYDV-LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK  184 (468)
T ss_pred             HHHh--cccccchHHHHHHHHHHHHHHHHHHHH-hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh
Confidence            1111  221222233333456677777776666 67888888877 4444433   333344568999999999999987


Q ss_pred             h
Q 017535          236 V  236 (370)
Q Consensus       236 ~  236 (370)
                      .
T Consensus       185 ~  185 (468)
T TIGR00788       185 T  185 (468)
T ss_pred             c
Confidence            6

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.37  E-value=7e-06  Score=71.43  Aligned_cols=132  Identities=20%  Similarity=0.234  Sum_probs=88.9

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-----hhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC------C
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS-----ARFPNSGRIILAQISSLSAIPLAALLLLVLPD------D  168 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  168 (370)
                      .+++++....+.+.++..+... .++..|+.+|+.+     ||.+   .++.................+....      .
T Consensus         8 vEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtP---yI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~   83 (403)
T PF03209_consen    8 VELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTP---YIWGGTLLQAGGLAIAPFALLLLAESGQQSSG   83 (403)
T ss_pred             HHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchh---hhHHHHHHHHHHHHHHHHHHHHHccccccccc
Confidence            6788888888888877766654 5899999999977     5544   2222222222211111111111222      1


Q ss_pred             CCh--hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 PST--PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 ~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..  .....+.+.+.|++...... ...+++.|..|+++|+.+.++...+.-+|..++..+.|.+.+.+
T Consensus        84 ~~~~g~~~a~l~F~l~G~G~~~s~T-~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~  152 (403)
T PF03209_consen   84 PFWLGLALAALAFLLYGLGVHASGT-SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPF  152 (403)
T ss_pred             ccHHHHHHHHHHHHHHHhhHhHhHH-HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            121  22344555667777776666 77899999999999999999999999999999999999998865

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.34  E-value=3.8e-09  Score=96.88  Aligned_cols=114  Identities=19%  Similarity=0.119  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHH
Q 017535          107 EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI  186 (370)
Q Consensus       107 ~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (370)
                      ...++..+...++..+|+++.|+++||+|||+.       ..++..+..+...+ .. ......+.+.+.+..++.|++.
T Consensus        46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~-------~~~~~~~~~i~~~~-~~-~~~~~~~~~~~~~~R~~~G~~~  116 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPA-------LIISALLMIIGSIL-IA-FAPSYNNFWMLLIGRFLIGFGI  116 (451)
T ss_pred             HHHHHHHHHHHhhhccccccccccccccccccc-------cccccccccccccc-cc-cccccccccccccccccccccc
Confidence            456788888899999999999999999999987       33333332222211 11 1211113455777788899998


Q ss_pred             HhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          187 SWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      |...+ ....++.|..|++.|+...++.+....+|..++..+.-
T Consensus       117 g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~  159 (451)
T PF00083_consen  117 GGAYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGY  159 (451)
T ss_pred             ccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            88888 88999999999999999999999888888777765543

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.31  E-value=7.3e-06  Score=54.23  Aligned_cols=50  Identities=20%  Similarity=0.248  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           90 SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        90 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      ....|+|.|+++.|+++.++|.+.++..+..+++.++.|+++||+++++.
T Consensus        18 ~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~   67 (77)
T PF12832_consen   18 CLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV   67 (77)
T ss_pred             HHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence            34468899998899999999999999999999999999999999998875

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.21  E-value=4.9e-06  Score=74.55  Aligned_cols=149  Identities=15%  Similarity=0.110  Sum_probs=97.4

Q ss_pred             HHHHHHHHhhhhhhHHHH-HHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-hCCCchhHHHHHHH
Q 017535           75 FQIIVAQGVTGSFPWSAL-SFAAMWLEL--TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSA-RFPNSGRIILAQIS  150 (370)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~-~~~~~~~~~~~~~~  150 (370)
                      .++.....++....+++. .-.-.|++.  .+-+.+..|++.+...++.++++++.|+...|.++ |++       ++.+
T Consensus        36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-------li~s  108 (488)
T KOG2325|consen   36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-------LIVS  108 (488)
T ss_pred             HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-------HHHH
Confidence            344444444444433332 233456655  78888899999999999999999999999999875 444       3444


Q ss_pred             HHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          151 SLSAIPLAALLLLVLPDDPS-TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .++++. ..++++.....+. ..+++++..++.|++.+...  ..-+++++..-+++|.++.+..+....+|..+||.+.
T Consensus       109 ~ii~~~-g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a--~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q  185 (488)
T KOG2325|consen  109 FLIAII-GNLLYLALAYVPNGVKYLMLVARILTGVGVGNFA--VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQ  185 (488)
T ss_pred             HHHHHH-HHHHHHHHHhcccchHHHHHHHHHHcCcCcccHH--HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence            444433 2222211222222 46678888888888766443  4578888877777788898888887788888887765


Q ss_pred             HHHH
Q 017535          230 GILA  233 (370)
Q Consensus       230 g~l~  233 (370)
                      ..+.
T Consensus       186 ~~f~  189 (488)
T KOG2325|consen  186 LAFT  189 (488)
T ss_pred             HHHh
Confidence            4433

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.17  E-value=5.7e-05  Score=68.45  Aligned_cols=220  Identities=14%  Similarity=0.132  Sum_probs=127.8

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCcc-ccCcccchhhhhhHHHHhhhccchHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA-NSDQ-VSSKSFRSDVKVLIQEAKSVIKIPSFQIIVA   80 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (370)
                      ++++....|.-.+|.+..+..++..+...+++||+...+.... ...+ ...........+..+..+..-.+|..+.++.
T Consensus       168 ~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l  247 (463)
T KOG2816|consen  168 GGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLL  247 (463)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHH
Confidence            4455556777888888888888888888888888544333221 0000 0001111111223333333222344333332


Q ss_pred             HH-hhhhhhHHHHH-HHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHhhhCCCchhHHHHHHHHHHHHH
Q 017535           81 QG-VTGSFPWSALS-FAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGG-RMGDFLSARFPNSGRIILAQISSLSAIP  156 (370)
Q Consensus        81 ~~-~~~~~~~~~~~-~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~  156 (370)
                      .. .......+-.. ..+.|+ ..++++..+.+.+.+...+...++.++.. .+...++.++.       ..++...-  
T Consensus       248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~-------i~lGl~~~--  318 (463)
T KOG2816|consen  248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL-------ISLGLLSE--  318 (463)
T ss_pred             HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-------hhHHHHHH--
Confidence            22 22222221111 234556 67999999999999988888888888777 66666777653       23332222  


Q ss_pred             HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          157 LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .....+..+.+..+   .++......+ ......| ...+.+...++++.+|.+.++...+..+.+.++|.+.+.+...+
T Consensus       319 ~~~~~~~af~~~~w---~~~~~~v~~~-~~~~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t  393 (463)
T KOG2816|consen  319 FLQLLLFAFATETW---MMFAAGVVVA-LAGIVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT  393 (463)
T ss_pred             HHHHHHHHHhccch---hhhHHHHHHH-hhcchhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            22222222333332   2222222222 2333445 66788888899999999999999999999999999999887766

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.15  E-value=9.4e-06  Score=72.54  Aligned_cols=157  Identities=10%  Similarity=0.070  Sum_probs=89.5

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFS-HEKTAFLMALFVIASSLGGLFGGRMGDFLSAR  137 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s-~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  137 (370)
                      +..+.+++...+|+.++...+...+....|... +|.....+...-+ +..-|..-++..+.+.+..+..|++-.++.+.
T Consensus       249 ~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~  328 (511)
T TIGR00806       249 VRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARW  328 (511)
T ss_pred             HHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhh
Confidence            456778888899998666555555555554433 5555555443222 22345555566677777888888875544222


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHH
Q 017535          138 FPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSF  217 (370)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  217 (370)
                      ..       +.++.+..+-..++++.  . ...+.|+.++..++++....+..+ +...-++.....+.-|...|+++++
T Consensus       329 ~~-------l~l~v~s~~~~gll~~m--~-~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfv  397 (511)
T TIGR00806       329 SK-------LLIAVVSAIQAGLVFWM--S-QSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFV  397 (511)
T ss_pred             HH-------HHHHHHHHHHHHHhhhh--h-cccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHH
Confidence            11       22222222111122221  2 223356666666666666665555 5566666667777779999999888


Q ss_pred             HHHhhchhhH
Q 017535          218 ESILSSFAPP  227 (370)
Q Consensus       218 ~~~~~~~~~~  227 (370)
                      .-+-..+-..
T Consensus       398 Al~LQtilT~  407 (511)
T TIGR00806       398 ATALKTIITA  407 (511)
T ss_pred             HHHHHHheEE
Confidence            7766655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.02  E-value=0.00058  Score=62.62  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHh
Q 017535          109 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISW  188 (370)
Q Consensus       109 ~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  188 (370)
                      .++..++..+...+..++.|-++|+-++||.      .+.+...++. +....++...  +..++...++.++...+...
T Consensus        72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~------~l~~~~~~~~-~~~~~l~~v~--~~~~~~~~~l~iia~v~~~~  142 (477)
T PF11700_consen   72 WLYANSISGLLQALLAPFLGAIADYGGRRKR------FLLIFTLLGV-LATALLWFVS--PGQWWLALVLFIIANVGYEA  142 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccccchH------HHHHHHHHHH-HHHHHHHHhC--cchHHHHHHHHHHHHHHHHH
Confidence            3556667778888888999999999888876      1222222222 2222222222  22233333333333334444


Q ss_pred             cCCCCccchhccccCCCch--------------------------hHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          189 NAPATNNPIFAEIVPEKSR--------------------------TSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~--------------------------g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ... ..++++.++.+++.+                          ++.++.-...+++|+.+.-.+.-.+...
T Consensus       143 ~~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~  214 (477)
T PF11700_consen  143 SNV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVIS  214 (477)
T ss_pred             HHH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444 568889999988888                          9999999999999998776655444443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.96  E-value=0.0026  Score=57.30  Aligned_cols=164  Identities=13%  Similarity=0.088  Sum_probs=90.6

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHH--H-HhCCCHHH-HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL--E-LTGFSHEK-TAFLMALFVIASSLGGLFGGRMGDFL  134 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~-~~g~s~~~-~~~~~~~~~~~~~ig~~~~g~l~dr~  134 (370)
                      .+..+...++++++++..+...+........+. ...|..+  . ..+.+... .++.....+++.+++.+..+.+.+|.
T Consensus       227 ~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~ri  306 (461)
T KOG3098|consen  227 SELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRI  306 (461)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhh
Confidence            455556667788888666666655555443333 3344433  2 44444433 33444445777777777788887776


Q ss_pred             hhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCC-------------hhHHHHHHHHHHHHHHHhcCCCCccchhccc
Q 017535          135 SARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPS-------------TPVMHGLVLVVTGLFISWNAPATNNPIFAEI  201 (370)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  201 (370)
                      .+.....    ...++..+......+..+..+...+             ......++.++.|++-..... ..+.++...
T Consensus       307 r~fg~~~----~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t-~~~~ii~~~  381 (461)
T KOG3098|consen  307 RGFGRKP----TVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNT-QRYVIIALL  381 (461)
T ss_pred             hhcccCc----chhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHH-HHHHHHHHH
Confidence            4443211    1222222222222233333332210             123455666777777665555 567777777


Q ss_pred             cCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          202 VPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       202 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      . ++.|..+.++..+-..++..++-...
T Consensus       382 ~-~~~~~~~fsi~kfyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  382 Y-PDDRAQAFSLFKFYQSVASCVAFFFS  408 (461)
T ss_pred             h-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence            7 56688888888888777776654433

>PRK03612 spermidine synthase; Provisional

Probab=97.82  E-value=0.0028  Score=58.83  Aligned_cols=129  Identities=15%  Similarity=0.139  Sum_probs=72.2

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVL  179 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (370)
                      ..+|-+....+.+.+.+..+..+|+.+++++.++..++..    ..-+.++.+..+ ...+...................
T Consensus        43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~----~~e~~i~l~~~~-~~~ll~~~~~~~~~~~~~~~~~~  117 (521)
T PRK03612         43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV----AVELLLALLGGL-SALILYAAFAFQGLSRLLLYVLV  117 (521)
T ss_pred             HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678888888999999999999999888877643322211    010111111111 11111111111111112233444


Q ss_pred             HHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          180 VVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       180 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      +..++..|...| ....+..+ ...+..|...|-......+|+++|+.+.+++.-.
T Consensus       118 ~~~~~l~G~~~P-l~~~~~~~-~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp  171 (521)
T PRK03612        118 LLIGLLIGMEIP-LLMRILQR-IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLP  171 (521)
T ss_pred             HHHHHHHHHHHH-HHHHHHHh-ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence            556777777766 43333333 2222356778888888999999999998887653

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.80  E-value=0.00059  Score=60.15  Aligned_cols=131  Identities=14%  Similarity=0.062  Sum_probs=80.9

Q ss_pred             HHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCChhH
Q 017535           96 AMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL-VLPDDPSTPV  173 (370)
Q Consensus        96 ~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  173 (370)
                      ..+. ..+| +...+-+...++.+.++...+.+-|+.||+|-|..       ..++....++...+=.. ..+.-+...+
T Consensus        68 ~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-------~llgt~ln~iGa~Ir~iss~p~v~~~f~  139 (480)
T KOG2563|consen   68 NNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-------LLLGTVLNGIGAWIRLISSLPFVPPLFR  139 (480)
T ss_pred             HHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-------HHHHHHHHHHHHHHhhhccCccccccch
Confidence            3455 5567 66667777778899999999999999999999865       33333333322222121 1221112222


Q ss_pred             --HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          174 --MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       174 --~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                        +........+....+... ...-.....+|+++|+++..+..+...+|.+++..+...+..+
T Consensus       140 ~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  140 RPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             hhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence              233333344443333332 2234455678999999999999998889988887776666554

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.69  E-value=0.00099  Score=60.61  Aligned_cols=136  Identities=19%  Similarity=0.212  Sum_probs=83.8

Q ss_pred             HHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh---hhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           97 MWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS---ARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        97 ~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      .|+ +++|+++.+...+.....+.-.+ .++.|.++|-+-   .||..     -++++.+++.. ....+...+......
T Consensus        14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~-----Y~~i~~~~~~~-~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   14 PFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKP-----YMIIGWLLGAV-SALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchH-----HHHHHHHHHHH-HHHHHHhcccccchh
Confidence            444 78999999998887777665554 678899999863   23221     12333333322 222222233322223


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccC--CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCC
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVP--EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~  241 (370)
                      ....+.+++..++...... ..-++..|...  ++.+|...+....+..+|+.++..+.|.+.+.. +++.
T Consensus        87 ~~~~~~l~la~~g~a~~DV-~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~-~~~~  155 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADV-AADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSF-GPQG  155 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcC-CCeE
Confidence            3344444555555555444 55666666542  233778888888899999999999999998876 5443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.69  E-value=0.002  Score=52.81  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcC
Q 017535           11 GWRISFHIVGLISVVVGTLVRLFAN   35 (370)
Q Consensus        11 gWr~~f~i~~~~~~i~~~~~~~~~~   35 (370)
                      .|++++.+.+++.++..++..++=+
T Consensus        39 ~W~~I~si~~lL~~IpLIly~ifGk   63 (267)
T PF07672_consen   39 NWQWILSIFILLIFIPLILYIIFGK   63 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            5999999999888777766666633

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=97.67  E-value=0.015  Score=52.31  Aligned_cols=121  Identities=14%  Similarity=0.012  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH---hCC--CCCChhHHHHHHHHHHH
Q 017535          109 TAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL---VLP--DDPSTPVMHGLVLVVTG  183 (370)
Q Consensus       109 ~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~g  183 (370)
                      .++..+...+.-++..++..++..|.++++..........++.+++....+++..   ...  ....+.+.+....++.+
T Consensus       326 ~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s  405 (498)
T COG3104         326 PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQS  405 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHH
Confidence            4455566666777777788888888666543222222333333322221111111   112  22234555667778888


Q ss_pred             HHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHH
Q 017535          184 LFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g  230 (370)
                      ++--...| +..+++....|+...+..+|+.......+..++..+.+
T Consensus       406 ~gEL~iSp-vGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         406 FGELFISP-VGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             HHHHHhCH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            88877778 88899999999988888888887777766666655554

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.56  E-value=0.004  Score=55.08  Aligned_cols=60  Identities=15%  Similarity=-0.031  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      .+++.+.++..|+..|..+. ..+..+.+..++++|-.++|.......+|..++..++-++
T Consensus       335 i~ivf~lif~eGLlGGa~YV-NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  335 IWIVFVLIFYEGLLGGASYV-NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HHHHHHHHHHHHHhhhHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            56677788888998888888 7788888889999999999999999888888877665444

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.55  E-value=0.0026  Score=56.29  Aligned_cols=155  Identities=9%  Similarity=0.062  Sum_probs=88.9

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELT---GFSHEKTAFLMALFVIASSLGGLFGGRMGDFLS  135 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~  135 (370)
                      +..++++++..+||.++...+...+...+|... +|.....++.   +-....-|.+-+...+.+.++.+..|++..++.
T Consensus       234 ~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~  313 (412)
T PF01770_consen  234 RLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWD  313 (412)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchH
Confidence            456778888999999777766666666665544 5655555444   333444566666777778888888888854444


Q ss_pred             hhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHH
Q 017535          136 ARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR  215 (370)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  215 (370)
                      +...       ..++....+...++.+..   ...+.+...+..++.+.......+ +...-++.....+.-|...|+++
T Consensus       314 ~~~~-------l~l~~~S~l~a~~L~lm~---~t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNt  382 (412)
T PF01770_consen  314 RWGE-------LALGVFSLLQAGLLFLMS---FTGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINT  382 (412)
T ss_pred             HHHH-------HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHH
Confidence            4322       122212111111222211   122344555555555544444444 44455555566777888899888


Q ss_pred             HHHHHhhchh
Q 017535          216 SFESILSSFA  225 (370)
Q Consensus       216 ~~~~~~~~~~  225 (370)
                      ++..+-..+-
T Consensus       383 f~Al~LQtil  392 (412)
T PF01770_consen  383 FVALVLQTIL  392 (412)
T ss_pred             HHHHHHHHhe
Confidence            8766655443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.54  E-value=1.1e-05  Score=74.91  Aligned_cols=135  Identities=11%  Similarity=-0.040  Sum_probs=2.4

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH---hCCC---
Q 017535           94 FAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL---VLPD---  167 (370)
Q Consensus        94 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---  167 (370)
                      .++++-+.++++..++|++.+.+-++.++..++..++.+|.+|-+.       +.++.++..+..++..+   ....   
T Consensus        25 ~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprw-------ig~g~~~~~~g~~l~~lPhf~~~~y~~   97 (539)
T PF03137_consen   25 SLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRW-------IGIGALLMGLGSLLFALPHFLSGPYSY   97 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce-------eeecHHHHHHHHHHHhccHhhcCCCcc
Confidence            3444458899999999999999999999999999999887544433       22222222111111100   0000   


Q ss_pred             ------------------------------------C---CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchh
Q 017535          168 ------------------------------------D---PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT  208 (370)
Q Consensus       168 ------------------------------------~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g  208 (370)
                                                          .   ...+.++.+..++.|++....++ ...+++=|.++++..+
T Consensus        98 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~sp  176 (539)
T PF03137_consen   98 EEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSP  176 (539)
T ss_dssp             ------------------------------------------------------SSS-----------------------
T ss_pred             ccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCc
Confidence                                                0   00123455566777888777787 8899999999999999


Q ss_pred             HHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          209 SVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .-.|+...+..+|-++|-.+++.+...+
T Consensus       177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~y  204 (539)
T PF03137_consen  177 LYIGILYAMSILGPALGFLLGSFCLRIY  204 (539)
T ss_dssp             ----------------------------
T ss_pred             cchhhhhHHhhccHHHHHHHHHHHHhce
Confidence            9999999999999999888888877654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=97.45  E-value=0.0031  Score=55.41  Aligned_cols=126  Identities=11%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             HHHHHHH-HHhCC---C----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           93 SFAAMWL-ELTGF---S----HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        93 ~~~~~~~-~~~g~---s----~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                      +++|.|+ +..+.   +    ....+...++..+...+-+++.|.++|+.|+||..      ..+...+.....+.+.+ 
T Consensus        36 ~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~------~~~f~~i~i~~~~~L~~-  108 (438)
T COG2270          36 FIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKF------FGFFTAIGIISTFLLWF-  108 (438)
T ss_pred             ehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchH------HHHHHHHHHHHHHHHHH-
Confidence            4568887 44332   3    24455666667777777888999999999999872      22222233322222222 


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhH
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPP  227 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  227 (370)
                      .+.. ..++...+++.+...+...... ...+++.+..+++..++.+++....+++|+.+.-.
T Consensus       109 i~~~-s~~~~~l~~~il~~i~~~~s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li  169 (438)
T COG2270         109 IPPG-SYLLLLLLFLILASIGFEFSNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLI  169 (438)
T ss_pred             hCCC-chHHHHHHHHHHHHHhcchhhe-ehhhHhhhhcCccccCcccccccccccccchHHHH
Confidence            3332 3455555555666665555555 67899999999998999999988888988866543

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=97.42  E-value=0.055  Score=48.91  Aligned_cols=172  Identities=15%  Similarity=0.113  Sum_probs=91.5

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhC
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  138 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  138 (370)
                      ++..+.+++++|.|....+++..+..=+.+... .-...=+-+.|++..+.+++..+..-.    .++.|+++.|+.+-+
T Consensus       265 ~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~----qii~~~~~~Kws~g~  340 (544)
T PF13000_consen  265 KDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVLIDFPF----QIILPYYIGKWSAGS  340 (544)
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHHHhhhH----HHHHHHHhhhhhcCC
Confidence            445566677888888666555544444443333 222333468999999888765444333    444455555543322


Q ss_pred             CCc-------------h-----------hHHHHHHHHHHHHHHH---HHHHHhCCCCC-ChhHHHHHHH---HHHHHHHH
Q 017535          139 PNS-------------G-----------RIILAQISSLSAIPLA---ALLLLVLPDDP-STPVMHGLVL---VVTGLFIS  187 (370)
Q Consensus       139 ~~~-------------~-----------~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~---~~~g~~~~  187 (370)
                      ...             .           .+.....+...-+...   ......+|... .....+.+++   .+..+...
T Consensus       341 ~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~st  420 (544)
T PF13000_consen  341 PPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMST  420 (544)
T ss_pred             CccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            210             0           0122222222111111   11112234222 1122222221   22222222


Q ss_pred             hcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          188 WNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+. ...+.-+.+.+|..-|+-+.+.|++.|+|+-.-..+.=++.|..
T Consensus       421 vmFV-ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  421 VMFV-AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHH-HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence            2233 34666677889999999999999999999988888888888887

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.42  E-value=0.00095  Score=60.69  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=69.4

Q ss_pred             HHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHH-HHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCcc
Q 017535          117 VIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIP-LAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNN  195 (370)
Q Consensus       117 ~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  195 (370)
                      ++..++.+++.|.++||+|||..       ..+..+..++ ..+..+..       +|.+. ..-+.| +.+.... ...
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~-------L~~~~~~~~l~~~~~~~~~-------~~~~~-~~~l~g-~~~~~~s-~~~  134 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVV-------LLLPLFGTILPALCLLFQG-------YWFFL-LLGLSG-GFSAIFS-VGF  134 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhh-------HHHHHHHHHHhHHHHHHHH-------HHHhh-hccccc-chhhhhh-hhh
Confidence            67888899999999999999976       2222222211 11111111       22222 111122 2222233 568


Q ss_pred             chhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          196 PIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       196 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +++++....+.|....|+.+.....+..++|.+.+.+....
T Consensus       135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~  175 (463)
T KOG2816|consen  135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL  175 (463)
T ss_pred             hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            88999999999999999999999999999999999999886

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=97.31  E-value=0.041  Score=49.67  Aligned_cols=143  Identities=17%  Similarity=0.113  Sum_probs=69.9

Q ss_pred             HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC---
Q 017535           93 SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD---  168 (370)
Q Consensus        93 ~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  168 (370)
                      .-.|.++ ..+.-+....+.+...-.+..++.....|.+.||..|.+..+..+..--+...+++.+....+ .....   
T Consensus        23 Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~-~~~~~~~~  101 (432)
T PF06963_consen   23 FAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLL-SYPSSSSQ  101 (432)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH-hCCccccc
Confidence            3456777 555445555565555667788888888899999987766532222221222222222222222 12221   


Q ss_pred             -CChhHHHHHHHHHHHHHHHhcCCCCccc----hhcccc--CCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          169 -PSTPVMHGLVLVVTGLFISWNAPATNNP----IFAEIV--PEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       169 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                       ..............+...-....+...+    .+..+.  ++......++.+.-+-.+.-.++|.+.|.+.+..
T Consensus       102 ~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~  176 (432)
T PF06963_consen  102 SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFA  176 (432)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence             1111122222222222111111101111    111122  3444556666666666778899999999998865

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.24  E-value=0.01  Score=50.82  Aligned_cols=131  Identities=21%  Similarity=0.282  Sum_probs=83.6

Q ss_pred             HHHHHHHHhCCCH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCCh
Q 017535           94 FAAMWLELTGFSH--EKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPST  171 (370)
Q Consensus        94 ~~~~~~~~~g~s~--~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (370)
                      ..+.+....+.+.  ...++......+...++.++.|++.||.|+|+.       ...+..... ...........  ..
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~-~~~~~~~~~~~--~~   93 (338)
T COG0477          24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-------LIIGLLLFL-LGTLLLALAPN--VG   93 (338)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-------HHHHHHHHH-HHHHHHHhCcc--ch
Confidence            3455555555555  478888888888888888999999999987733       222222111 11111111222  22


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCC-CchhHHHHHHHH-HHHHhhchhhHHHHHHHHh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE-KSRTSVYAMDRS-FESILSSFAPPVVGILAQH  235 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~-~~~~~~~~~~~~~g~l~~~  235 (370)
                      .+.+.+..+..|++.+...+ ...+++.+..|+ +.++...+.... ...++..+++.+.+.+...
T Consensus        94 ~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          94 LALLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455556777666666 678888888887 568888888887 5667778888776666654

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.00018  Score=59.33  Aligned_cols=134  Identities=15%  Similarity=0.040  Sum_probs=92.3

Q ss_pred             HHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           95 AAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        95 ~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      +..++ .+.+.+..+..++++++....++-.+++|++.||. |.|..   ....+++.   .  +.-+.+. ........
T Consensus        66 lq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~g---tii~~~fv---~--~GqliFa-~Ggi~~aF  136 (459)
T KOG4686|consen   66 LQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLG---TIILCIFV---F--LGQLIFA-AGGISHAF  136 (459)
T ss_pred             hhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHH---HHHHHHHH---H--HHHHHHH-hchHHHHH
Confidence            34444 45667777788899999999999999999999983 44432   11111111   1  1111111 11122346


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      |.+....|++|++.-.... ..+.++...+..+..+.++|+...+..+|+.+--.+.+++.|..+.
T Consensus       137 w~M~~GRF~FGIGgESlAV-aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~  201 (459)
T KOG4686|consen  137 WTMLAGRFLFGIGGESLAV-AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR  201 (459)
T ss_pred             HHHHhhheeeccCchhhhh-hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHH
Confidence            7778888888887554445 5677888888888999999999999999998888888999888743

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=97.17  E-value=0.045  Score=50.05  Aligned_cols=43  Identities=9%  Similarity=0.008  Sum_probs=38.5

Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ..+..+.|.+..++..+-+++.....++|..+++.+..++.+.
T Consensus       149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4588889999999999999999999999999999988887754

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=97.17  E-value=0.0014  Score=59.11  Aligned_cols=47  Identities=11%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCC
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK  240 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~  240 (370)
                      ...+..+++..|+.+++..+++......+..++|.+...+.... |+.
T Consensus       408 ~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-g~~  454 (488)
T KOG2325|consen  408 ALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-GPR  454 (488)
T ss_pred             hHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-Ccc
Confidence            34667778889999999999999999999999999888887776 544

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=97.16  E-value=0.02  Score=49.68  Aligned_cols=177  Identities=14%  Similarity=0.111  Sum_probs=91.4

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhC
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARF  138 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  138 (370)
                      ++..+-++.+++-|....+...-+..=..+... ...+.-+-++|++..+.+++..+..-..++.....|.++.  ++|+
T Consensus       252 ~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~p  329 (510)
T KOG3574|consen  252 HESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRP  329 (510)
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCc
Confidence            555666777888777554444444333333333 3445556789999999888664444444444444443322  1111


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhCCCC-----C--ChhHHHHHH-HHHHHHHHHhcCCCCccchhccccCCCchhHH
Q 017535          139 PNSGRIILAQISSLSAIPLAALLLLVLPDD-----P--STPVMHGLV-LVVTGLFISWNAPATNNPIFAEIVPEKSRTSV  210 (370)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~  210 (370)
                      ... ..+....-.+.......+.++ .+..     .  ....++.+. ..+.+......+. ...+..+.+.||..-|+-
T Consensus       330 l~~-~lka~~~R~~~~~~~t~Lv~~-~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv-~~maf~aqisdp~iggTy  406 (510)
T KOG3574|consen  330 LNV-FLKAVPYRLGGGLVQTALVWW-TPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFV-SGMAFHAQISDPAIGGTY  406 (510)
T ss_pred             chH-HHHhhhHHHHHHHHHHHHHhh-hcccccCCCceeechHHHHHHHHHHhhhHHHHHHH-HHHHHHhhcCCcccCccH
Confidence            100 000001111111111111111 1111     1  111111111 1122222222222 345667788999999999


Q ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535          211 YAMDRSFESILSSFAPPVVGILAQHVYGFKPI  242 (370)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~  242 (370)
                      +.+.|...++|+-.-..+..++.|.. ++...
T Consensus       407 mTlLNTLsnLGg~wp~tv~l~l~D~l-tv~~C  437 (510)
T KOG3574|consen  407 MTLLNTLSNLGGNWPGTVALWLADGL-TVKQC  437 (510)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHhcccC-ceeec
Confidence            99999999999988888899999987 55544

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.12  E-value=0.032  Score=42.60  Aligned_cols=106  Identities=9%  Similarity=0.035  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCC
Q 017535          113 MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPA  192 (370)
Q Consensus       113 ~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (370)
                      .++......++.++.+.+.+++|.|+.       ++++.+.-.+ ....++ .+    ..+.+...-.+.|++.+.... 
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~s-------m~lg~~~y~~-y~~~~~-~~----~~~~l~~~s~l~G~~~a~lW~-  108 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWS-------MILGSLGYAI-YIASFF-YP----NSYTLYPASALLGFGAALLWT-  108 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHH-------HHHHHHHHHH-HHHHHH-hh----hHHHHHHHHHHHhhhhHHhhH-
Confidence            344566677788888999999999865       3444333322 222221 11    134456666777777776666 


Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      ..-.++.+...++.+++-.++.-.+.+.+..+|..+.-.+
T Consensus       109 aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  109 AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5567788888888899999998888888777777655444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=96.83  E-value=0.0019  Score=58.32  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      ..++.|++.+|+++.+.|.++...-+..+++.+++|+++||+.+++.
T Consensus        32 pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~   78 (618)
T KOG3762|consen   32 PLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRP   78 (618)
T ss_pred             hHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence            57788999999999999999999999999999999999999998887

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.012  Score=55.78  Aligned_cols=129  Identities=11%  Similarity=-0.033  Sum_probs=90.8

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh---------------
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV---------------  164 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------  164 (370)
                      +.++++..+.|++.+.+-++..+..++..+...|..|-+.       +.++.++..+..++..+.               
T Consensus       125 rRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~-------Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~  197 (735)
T KOG3626|consen  125 RRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRW-------IGIGLVLMGLGSLLFALPHFFSGPYEYELEVIK  197 (735)
T ss_pred             hhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccce-------eeechhHHHHHHHHHhChHHhcCcchhhhhhhh
Confidence            7799999999999999999999988888888888665544       122211111111111100               


Q ss_pred             ----CC---------------------------CCC-ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHH
Q 017535          165 ----LP---------------------------DDP-STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYA  212 (370)
Q Consensus       165 ----~~---------------------------~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  212 (370)
                          .+                           ... ..+.++++..++.|++.....+ ...+++=|.+.+++...-.|
T Consensus       198 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t-lGisYiDDnvk~~~SplYlg  276 (735)
T KOG3626|consen  198 QSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT-LGISYIDDNVKKKNSPLYLG  276 (735)
T ss_pred             ccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc-CCCccccccccccCCcHHHH
Confidence                00                           000 1234566667777888777777 78888889888898999999


Q ss_pred             HHHHHHHHhhchhhHHHHHHHHhh
Q 017535          213 MDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       213 ~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +..++..+|-++|-.+++++...+
T Consensus       277 i~~~~~~lGPaiGfllgS~~l~lY  300 (735)
T KOG3626|consen  277 ILYSMAILGPAIGFLLGSFCLKLY  300 (735)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHee
Confidence            999999999999988888888776

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.79  E-value=0.16  Score=46.19  Aligned_cols=33  Identities=9%  Similarity=-0.039  Sum_probs=19.7

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS  206 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  206 (370)
                      .+..++..++.|++.+.... ...++.. .+|++.
T Consensus       106 f~~~~~~v~~~g~~~~~~q~-s~~gla~-~fp~~~  138 (437)
T TIGR00939       106 FVTTMASVVIINSGMALLQG-SLFGLAG-VFPSTY  138 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhcc-cchhhcc-cCCHHH
Confidence            44455556667777776665 5555555 467653

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=96.52  E-value=0.028  Score=37.65  Aligned_cols=45  Identities=16%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSAR  137 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  137 (370)
                      ..+|...++.++|..+.+++.+...++..+|.+...++.++..++
T Consensus        13 plLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~   57 (85)
T PF06779_consen   13 PLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPR   57 (85)
T ss_pred             hHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            456777799999999999999999999999999999888774434

Note that many members are hypothetical proteins.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.48  E-value=0.0031  Score=55.82  Aligned_cols=131  Identities=15%  Similarity=0.157  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HhhhCCCchhHHHHHHHHH-HHHHHHHHHHH----
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF----LSARFPNSGRIILAQISSL-SAIPLAALLLL----  163 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----  163 (370)
                      +|+|.|++..|.+....+.+....-+.+++..++.|..+||    +||||+.      +..... +.+.+..+.+.    
T Consensus        53 sy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf------I~~~s~~i~~~l~Lig~aaDig  126 (498)
T KOG0637|consen   53 SYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF------ILAGSLLIAVSLFLIGYAADIG  126 (498)
T ss_pred             ccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccch------HHHhhHHHHHHHhhhhhHhhhh
Confidence            68999999999999999888877778888889999999996    5666651      111111 11111111110    


Q ss_pred             -hCCCCCCh-hHHHHHHHHHHHH-----HHHhcCCCCccchhccccCCCchhH-HHHHHHHHHHHhhchhhHHHH
Q 017535          164 -VLPDDPST-PVMHGLVLVVTGL-----FISWNAPATNNPIFAEIVPEKSRTS-VYAMDRSFESILSSFAPPVVG  230 (370)
Q Consensus       164 -~~~~~~~~-~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~g  230 (370)
                       .+...... .-...+.++.+|+     ..-.... +.-+++.|...+.++-+ +++...++..+|+.+|-.+.+
T Consensus       127 ~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  127 LLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence             11111111 1112333344443     2223333 56788888887766666 999999999999988866654

>TIGR01272 gluP glucose/galactose transporter

Probab=96.21  E-value=0.022  Score=49.44  Aligned_cols=63  Identities=21%  Similarity=0.192  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ...+.+..++.|.+.+...+ ..++++.+..+++++++..++...+..+|..++|.+.+.+...
T Consensus        10 ~~~~l~~~f~~g~G~~~lq~-~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~   72 (310)
T TIGR01272        10 YVLFLGALFVLASGLTILQV-AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILS   72 (310)
T ss_pred             HHHHHHHHHHHHhhHHHHHh-hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence            44567778888888888888 8899999998998899999999999999999999999998854

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=96.05  E-value=0.077  Score=48.28  Aligned_cols=55  Identities=9%  Similarity=0.044  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHH
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPV  228 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  228 (370)
                      +...+..+++|+..|+... ....+..+.+++++|-.+..++.++..+|-.+|..+
T Consensus       373 ~~~~~~~~l~gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667888888887776 667777777888888888888888888888877765

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=95.88  E-value=0.13  Score=44.33  Aligned_cols=155  Identities=11%  Similarity=0.049  Sum_probs=80.9

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWS-ALSFAAMWLELTGFS--HEKTAFLMALFVIASSLGGLFGGRMGDFLSA  136 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~s--~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~  136 (370)
                      ...++++....+||.++...+...+..+++. +.+|....-++..-+  ...-|..=++..+.++++.++.|++.-.+.|
T Consensus       221 ~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r  300 (433)
T KOG3810|consen  221 VLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNR  300 (433)
T ss_pred             HHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccch
Confidence            3445577778889886555555555554433 334444443443211  1112333334456667777888887666555


Q ss_pred             hCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHH
Q 017535          137 RFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRS  216 (370)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  216 (370)
                      ...       .+++..... -....++ ..... ..|...+..++.........+ +...-++.....+.-|..+|+..+
T Consensus       301 ~g~-------~ll~~~s~~-~agllf~-m~~t~-~Iw~~Ya~yvlfr~~y~l~it-iA~~~iA~nL~~e~~gLvFGiNTF  369 (433)
T KOG3810|consen  301 WGD-------LLLAVGSAV-QAGLLFI-MAQTQ-HIWVCYAGYVLFRVIYQLTIT-IATFQIARNLSSELFGLVFGINTF  369 (433)
T ss_pred             hhH-------HHHHHHHHH-hhhhhhh-hhccc-ceehhhhhHHHHHhhHhhhhh-HHHHHHHHhhhhhhheeeeehHHH
Confidence            543       233222222 2222222 22222 244455555555554444444 445555666777888999999888


Q ss_pred             HHHHhhchh
Q 017535          217 FESILSSFA  225 (370)
Q Consensus       217 ~~~~~~~~~  225 (370)
                      +.-+-..+-
T Consensus       370 vAl~lQsil  378 (433)
T KOG3810|consen  370 VALILQSIL  378 (433)
T ss_pred             HHHHHHHhh
Confidence            766555443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.87  E-value=0.35  Score=43.23  Aligned_cols=128  Identities=16%  Similarity=0.080  Sum_probs=81.2

Q ss_pred             HHHHHHH-HH-hCCCHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 017535           93 SFAAMWL-EL-TGFSHEKTAFLMALF-VIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDP  169 (370)
Q Consensus        93 ~~~~~~~-~~-~g~s~~~~~~~~~~~-~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (370)
                      .|+..|+ .. .|++..+...-.-+. .=..++..++...+.|.++.|..       +++..+..+....++++  .   
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpv-------iil~~~~~i~t~~lll~--~---   91 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPV-------IILQALSYIITWLLLLF--G---   91 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHHHHHHHH--H---
Confidence            3556777 43 899998887655554 34666677788899999887754       33332322222222222  1   


Q ss_pred             ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHH
Q 017535          170 STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQ  234 (370)
Q Consensus       170 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~  234 (370)
                      .....+-+.-+..|+..+.-.  ..++++-..+|+++--++++.......+|..++..++-.+..
T Consensus        92 ~sv~~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs  154 (412)
T PF01770_consen   92 TSVLAMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS  154 (412)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            224445566667777655432  346777778888888888888888887777777766655554

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=95.79  E-value=0.58  Score=41.56  Aligned_cols=135  Identities=14%  Similarity=0.190  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhhhhhHHHH-HHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHH
Q 017535           75 FQIIVAQGVTGSFPWSAL-SFAAMWLEL-TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL  152 (370)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  152 (370)
                      ++.+++..+.....|..+ +-.+.|.+. .+.+.  ...+...+.+.+.+..++...+.-+...|..  .++........
T Consensus        20 ~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~--~~~~~~l~~~~   95 (406)
T KOG1479|consen   20 YLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLFNLLNAFLNTRLR--TRVGYLLSLIA   95 (406)
T ss_pred             HHHHHHHhcccccchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            344444444344444444 444444443 34343  4444445555555555665555555554421  11111111111


Q ss_pred             HHHHHHHHHHHhCCCC--CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHH
Q 017535          153 SAIPLAALLLLVLPDD--PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDR  215 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  215 (370)
                      +.+...+.+.+.-...  ....+...+.....+++.+.... ..+...+. .|++.....++-.+
T Consensus        96 il~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qg-s~~G~a~~-~P~~ytqavm~G~a  158 (406)
T KOG1479|consen   96 ILFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQG-SLYGLAGL-FPSEYTQAVMSGQA  158 (406)
T ss_pred             HHHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhcc-chhhhhhc-CCHHHHHHHHhcch
Confidence            1111111111101111  12233344445555666665554 44555554 67775544444333

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.57  E-value=0.063  Score=46.54  Aligned_cols=107  Identities=10%  Similarity=0.073  Sum_probs=63.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHH-HHHHHHHhhhhhhHHH
Q 017535           13 RISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSF-QIIVAQGVTGSFPWSA   91 (370)
Q Consensus        13 r~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   91 (370)
                      .++|....++.++..++....-+|.......+        .+..   +...+.++.++++|+. .+.+...++-...|.+
T Consensus       195 vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~--------~~~~---~~~~~a~~~i~~d~ril~LG~~qslFE~smy~F  263 (354)
T PF05631_consen  195 VAPFDAAIVLLAVAAVLILKTWPENYGDTSSS--------SSLS---GSFREAWRAILSDPRILLLGLIQSLFEGSMYLF  263 (354)
T ss_pred             cchHHHHHHHHHHHHHHHHhcccccCCCcccc--------cchH---HHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHh
Confidence            77887766665555554443333321111100        0000   3344556678888884 4456667777766666


Q ss_pred             H-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 017535           92 L-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDF  133 (370)
Q Consensus        92 ~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr  133 (370)
                      . .|.|..- ...+   ...|++++.++++.++|+.+..++..+
T Consensus       264 VflWtPaL~~~~~~---~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  264 VFLWTPALDPDDEE---LPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             eeeeeceecCCCCC---CCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5 5777766 2222   347899999999999999888766554

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=94.87  E-value=0.075  Score=47.48  Aligned_cols=63  Identities=21%  Similarity=0.123  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCC---chhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEK---SRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+.+.+++++++.|..-| +..++..|.++++   ++.+.+..+.+..++|..+++.+.+++.+..
T Consensus        34 ~~~~~gL~lia~G~G~~K~-ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~   99 (372)
T PF00854_consen   34 GLFYIGLALIAVGTGGIKP-NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY   99 (372)
T ss_dssp             CHHHHHHHHHHHHHHCCHH-HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS
T ss_pred             HHHHHHHHHHHhccccccc-cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc
Confidence            4566677778888888888 8889999988765   4667788889999999999999888888766

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=94.74  E-value=0.3  Score=42.80  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-----HHhhhCCCchhHHHHH
Q 017535           74 SFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGD-----FLSARFPNSGRIILAQ  148 (370)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d-----r~~~~~~~~~~~~~~~  148 (370)
                      ++..++...+...+.++...-+|.+++..|.|-.+.+.....+.=-  ---+++..+.|     |+|||+....+   +.
T Consensus        32 ~illLl~LYllQGiP~GL~~~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp---~q  106 (510)
T KOG3574|consen   32 SILLLLFLYLLQGIPLGLIGAIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVP---CQ  106 (510)
T ss_pred             hHHHHHHHHHHcCCchhHhhhhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeee---hH
Confidence            3666666677777788877777888887888877766644433211  12456677777     99999863111   11


Q ss_pred             HHHHHHHHHHHHHHHh---CC-CCC-ChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhc
Q 017535          149 ISSLSAIPLAALLLLV---LP-DDP-STPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       149 ~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  223 (370)
                      .  +++..+..+....   .. +.. .........+++.-|....--. ..-........+++.|-++.......+.|.+
T Consensus       107 ~--llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDI-AVDgwALtmLs~e~lgyaST~q~Vg~~~Gyf  183 (510)
T KOG3574|consen  107 Y--LLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDI-AVDGWALTMLSRENLGYASTCQSVGQTAGYF  183 (510)
T ss_pred             H--HHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhh-hhhHHHHHhcCHhhcCchhHHHHHHHhhhHH
Confidence            1  1111111111100   01 111 1122232333444444443333 3444555566777788887777777777776


Q ss_pred             hhhHH
Q 017535          224 FAPPV  228 (370)
Q Consensus       224 ~~~~~  228 (370)
                      ++..+
T Consensus       184 L~~~i  188 (510)
T KOG3574|consen  184 LGNVV  188 (510)
T ss_pred             hhcce
Confidence            66443

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=94.72  E-value=0.13  Score=45.49  Aligned_cols=113  Identities=12%  Similarity=0.066  Sum_probs=58.2

Q ss_pred             HHHHHHH-HHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHH-HhCCCC---CChhHHHHHHHHHHH
Q 017535          109 TAFLMAL-FVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLL-LVLPDD---PSTPVMHGLVLVVTG  183 (370)
Q Consensus       109 ~~~~~~~-~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~g  183 (370)
                      .-+.... +++...+|.++..++-++ ++|..        .+..++-....-++. ...+..   -..-+........+|
T Consensus       284 ~~~~~~l~fN~~d~vG~~~a~~~~~~-~~r~l--------~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lg  354 (406)
T KOG1479|consen  284 ALLLVFLSFNVFDLIGSILAALLTWP-DPRKL--------TIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLG  354 (406)
T ss_pred             HHHHHHHHhHHHHHhhhhhhhcccCC-CCcee--------hHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHH
Confidence            3344444 678888887777666554 23333        222222221111111 111111   111234556677788


Q ss_pred             HHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHH
Q 017535          184 LFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGIL  232 (370)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l  232 (370)
                      +..|.... +...+..+.+|++++-.+-.+..++-..|-+.|. +.+++
T Consensus       355 lsnGYlts-l~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~-~~s~l  401 (406)
T KOG1479|consen  355 LSNGYLTS-LIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS-LLSWV  401 (406)
T ss_pred             hccchHhh-heehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh-HHHHH
Confidence            88887776 6777778888877665555555544444444444 33443

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter

Probab=94.39  E-value=1.6  Score=40.92  Aligned_cols=8  Identities=25%  Similarity=0.484  Sum_probs=5.4

Q ss_pred             hhhccchH
Q 017535           67 KSVIKIPS   74 (370)
Q Consensus        67 ~~~~~~~~   74 (370)
                      ..+||.|.
T Consensus       252 gDVFR~P~  259 (521)
T PF02990_consen  252 GDVFRPPK  259 (521)
T ss_pred             HHHhcCcC
Confidence            36777776

Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=94.07  E-value=2.4  Score=40.20  Aligned_cols=145  Identities=19%  Similarity=0.089  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHH------HHHH
Q 017535           89 WSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPL------AALL  161 (370)
Q Consensus        89 ~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  161 (370)
                      ++...-+-.|+ ..++.+...+.-....+........+++++++|-+--|...      +.++..+....      ....
T Consensus        54 ~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t------I~~~s~i~~~G~~~lt~~a~~  127 (571)
T KOG1237|consen   54 FGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT------INIGSLISLLGLFGLTLSAMI  127 (571)
T ss_pred             hcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence            34444555667 77888877777777777777778889999999986444331      12221111111      1111


Q ss_pred             HHhCC-------C----CC-C--hhHHHHHHHHHHHHHHHhcCCCCccchhccccC---C-C--chhHHHHHHHHHHHHh
Q 017535          162 LLVLP-------D----DP-S--TPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP---E-K--SRTSVYAMDRSFESIL  221 (370)
Q Consensus       162 ~~~~~-------~----~~-~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~-~--~~g~~~~~~~~~~~~~  221 (370)
                      ....+       .    .. .  ...++...+....++.|..-| +..+.-.|.++   + +  .....+....+..++|
T Consensus       128 ~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~-~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g  206 (571)
T KOG1237|consen  128 PALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP-CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGG  206 (571)
T ss_pred             hhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC-cchhhcccccCccCcchhhCcccchhHHHHHHHHH
Confidence            11111       0    00 1  122344444555556666677 77788888887   2 2  2335666777777888


Q ss_pred             hchhhHHHHHHHHhhcCCCC
Q 017535          222 SSFAPPVVGILAQHVYGFKP  241 (370)
Q Consensus       222 ~~~~~~~~g~l~~~~~g~~~  241 (370)
                      ..++..+.-++.+.. +|..
T Consensus       207 ~l~a~t~~vyiq~~~-~w~l  225 (571)
T KOG1237|consen  207 ALLAQTVLVYIQDNV-GWKL  225 (571)
T ss_pred             HHHHHHHHHhhhhcc-ccee
Confidence            888777777766655 5443

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=93.89  E-value=0.34  Score=40.34  Aligned_cols=40  Identities=20%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535          100 ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      +.+|+...++|.++.......++...+.|-++||.|||+.
T Consensus        65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra  104 (454)
T KOG4332|consen   65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA  104 (454)
T ss_pred             hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc
Confidence            7889999999988877777777888888999999999987

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=92.67  E-value=7.8  Score=35.54  Aligned_cols=44  Identities=16%  Similarity=0.050  Sum_probs=36.8

Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..+..+.|.+..++..+.+++.+...+++..++..+..++..+-
T Consensus       168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            34667788888888999999999999999999888888877643

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=92.55  E-value=8.6  Score=35.52  Aligned_cols=79  Identities=9%  Similarity=-0.055  Sum_probs=43.8

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH--HHHHHHHHHhCCCHHHH----HHHHHHHHHHHHHhHHHHHHHHHH
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL--SFAAMWLELTGFSHEKT----AFLMALFVIASSLGGLFGGRMGDF  133 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~s~~~~----~~~~~~~~~~~~ig~~~~g~l~dr  133 (370)
                      ....+.++.++++|.++.+.+..++......+.  .|- ..++...-++.+.    |.+....++..++..++.+++.+|
T Consensus       251 ~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k-~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~  329 (472)
T TIGR00769       251 MSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWK-SKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK  329 (472)
T ss_pred             CCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888999998666555544433332222  122 2232222344332    333334455666666777888888


Q ss_pred             HhhhCC
Q 017535          134 LSARFP  139 (370)
Q Consensus       134 ~~~~~~  139 (370)
                      +|-+..
T Consensus       330 ~Gw~~~  335 (472)
T TIGR00769       330 YGWLTA  335 (472)
T ss_pred             hhHHHH
Confidence            887744

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=92.49  E-value=0.021  Score=49.44  Aligned_cols=55  Identities=9%  Similarity=-0.004  Sum_probs=2.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          174 MHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       174 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      ...+..+++|+..|+... ....+..+.++++++..+..+..++..+|-.+|..+.
T Consensus       250 ~~~i~~~l~g~TNGyl~t-l~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls  304 (309)
T PF01733_consen  250 WFIILMLLFGFTNGYLST-LAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS  304 (309)
T ss_dssp             -----------------H-HHH----------------------------------
T ss_pred             HHHHHHHHHHHccchhhh-ceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667778888887766 6677777788888888888888888787777776553

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.05  E-value=3.9  Score=34.36  Aligned_cols=142  Identities=18%  Similarity=0.246  Sum_probs=71.0

Q ss_pred             HHhhhccchHHHHH-HHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCc
Q 017535           65 EAKSVIKIPSFQII-VAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNS  141 (370)
Q Consensus        65 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  141 (370)
                      ..+.+.++++..++ .+..++-...|.+. .|.|..- +..+.+   -|.+++.+.+++++|+-+..++..|-..|.-. 
T Consensus       240 aa~aiaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~iP---hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~-  315 (454)
T KOG4332|consen  240 AARAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIP---HGFIFATFMLASMLGSSLASRLLSRSSPKVES-  315 (454)
T ss_pred             hHHHHhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCcccCC---chhHHHHHHHHHHHhhHHHHHHHhcCCcccch-
Confidence            34456666664433 34444444444444 4666554 344433   46777777888888887777666653333221 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH---hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHH
Q 017535          142 GRIILAQISSLSAIPLAALLLL---VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRS  216 (370)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  216 (370)
                       .   +.+...+......+...   ..|.. .....-.+.+..+-.+.|...| ...-+-.+..|.+.|++.+-+...
T Consensus       316 -y---mqivf~vs~a~l~Lpilt~~vsP~k-es~~~s~i~F~~~E~cvGlfwP-SimkmRsqyIPEearstimNfFRv  387 (454)
T KOG4332|consen  316 -Y---MQIVFLVSIAALLLPILTSSVSPSK-ESPSESLIGFCLFEACVGLFWP-SIMKMRSQYIPEEARSTIMNFFRV  387 (454)
T ss_pred             -H---HHHHHHHHHHHHHHHHHHhccCCCc-CCchHHHHHHHHHHHHHhhcch-HHHHHHHhhCCHHHHhhhhhheec
Confidence             1   11111211111111111   11221 2222233334444556677777 666666778888888665554433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=90.35  E-value=15  Score=34.15  Aligned_cols=80  Identities=9%  Similarity=-0.075  Sum_probs=42.7

Q ss_pred             hhhHHHHhhhccchHHHHHHHHHhhhhhhHHHH-HHHHHHHHHhCCCHHH----HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 017535           60 KVLIQEAKSVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWLELTGFSHEK----TAFLMALFVIASSLGGLFGGRMGDFL  134 (370)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~ig~~~~g~l~dr~  134 (370)
                      ....+.++.++|+|.+..+.+..+.......+. .-.-..++..--++.+    .|......++..++..++++.+.+|+
T Consensus       267 ~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~  346 (491)
T PF03219_consen  267 MSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRF  346 (491)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445567778888998766655544444332222 1112222222223322    23334445666666667778888887


Q ss_pred             hhhCC
Q 017535          135 SARFP  139 (370)
Q Consensus       135 ~~~~~  139 (370)
                      |-+..
T Consensus       347 GW~~~  351 (491)
T PF03219_consen  347 GWRTA  351 (491)
T ss_pred             hHHHH
Confidence            76644

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=89.49  E-value=14  Score=32.42  Aligned_cols=125  Identities=17%  Similarity=0.155  Sum_probs=63.1

Q ss_pred             hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 017535          102 TGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV  180 (370)
Q Consensus       102 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (370)
                      .|-+..+.+++.+.+..+..+|+.+.-++.|.- -.|..    ..-..++.+..+....+.+..........+++.+..+
T Consensus        38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv----~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~  113 (508)
T COG4262          38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFV----DVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTA  113 (508)
T ss_pred             cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHH----HHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHH
Confidence            455566777777777777777777666555431 11111    0011222222222222221111222224566777788


Q ss_pred             HHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHH
Q 017535          181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILA  233 (370)
Q Consensus       181 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~  233 (370)
                      .+|.-.|.-.| ....++..... + .....+.....-++|...+..+..++.
T Consensus       114 vIG~LVG~EiP-L~mrml~~r~a-~-~k~~~s~vl~~DYLGal~~gLl~p~ll  163 (508)
T COG4262         114 VIGVLVGAEIP-LLMRMLQRRQA-K-AKDLGSRVLTLDYLGALAGGLLWPFLL  163 (508)
T ss_pred             HHHHHHhcchH-HHHHHHHHHHH-H-HHhhhhhhhhhHhhhhhhHHHHHHHHH
Confidence            88888888777 66666655221 1 122222233336777766666655543

>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised

Probab=88.65  E-value=2.3  Score=32.11  Aligned_cols=31  Identities=6%  Similarity=-0.071  Sum_probs=24.4

Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhc
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSS  223 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  223 (370)
                      +.|.+++...+++..|+..|+-.+-.+++-.
T Consensus       114 isYGilSaSWD~~r~GSllG~~e~~~N~~r~  144 (153)
T PF11947_consen  114 ISYGILSASWDPEREGSLLGWEEFKRNWGRM  144 (153)
T ss_pred             hhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence            3466777778888899999999888887653

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.80  E-value=5.6  Score=36.41  Aligned_cols=110  Identities=10%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             HHHHH-HHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHH
Q 017535          108 KTAFL-MALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFI  186 (370)
Q Consensus       108 ~~~~~-~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  186 (370)
                      .+|+. .++......+..++++.+.|+++.|..       ++++. .+....-+.++ .++    -+.++..-.+.|++.
T Consensus        50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~-------lv~ga-~~y~~f~~gfl-~~N----~y~~yfssallG~Ga  116 (461)
T KOG3098|consen   50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWA-------LVIGA-TCYAAFPLGFL-FPN----SYYLYFSSALLGFGA  116 (461)
T ss_pred             CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHH-------HHHHh-HHHHHHHHHHH-hcc----hHHHHHHHHHhhhhH
Confidence            34444 556678888899999999999999965       33332 22222222222 222    234556666777777


Q ss_pred             HhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHH
Q 017535          187 SWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGI  231 (370)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~  231 (370)
                      +.... -.-.++.+...++...+..++.-.+...+..+|..+.-.
T Consensus       117 allw~-GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  117 ALLWT-GQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             Hheec-ccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhhee
Confidence            76555 557888888888889999999888888887777655433

>PRK10263 DNA translocase FtsK; Provisional

Probab=86.66  E-value=19  Score=37.37  Aligned_cols=18  Identities=6%  Similarity=-0.062  Sum_probs=11.8

Q ss_pred             HHhhchhhHHHHHHHHhh
Q 017535          219 SILSSFAPPVVGILAQHV  236 (370)
Q Consensus       219 ~~~~~~~~~~~g~l~~~~  236 (370)
                      ..||++|..+...+...+
T Consensus       141 ~gGGIIG~lLs~lL~~Lf  158 (1355)
T PRK10263        141 ASGGVIGSLLSTTLQPLL  158 (1355)
T ss_pred             cccchHHHHHHHHHHHHH
Confidence            346777777766666655

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=86.43  E-value=23  Score=31.50  Aligned_cols=71  Identities=13%  Similarity=-0.121  Sum_probs=36.1

Q ss_pred             hccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCC
Q 017535           69 VIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGF-SHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      +++...+.+.+.+++..+.--.--.-...|+..++- +....+....+-....++-..+.|...|+..|+|.
T Consensus        24 ~ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kv   95 (503)
T KOG2601|consen   24 LLSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKV   95 (503)
T ss_pred             cccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHH
Confidence            344444444555544443332211223556644433 33344443334455555666667778888888775

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=85.28  E-value=11  Score=34.30  Aligned_cols=32  Identities=16%  Similarity=-0.011  Sum_probs=25.4

Q ss_pred             hhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC
Q 017535          207 RTSVYAMDRSFESILSSFAPPVVGILAQHVYG  238 (370)
Q Consensus       207 ~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g  238 (370)
                      +|...|+.|....+.+.+.....|.+.+..|+
T Consensus       442 ~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~  473 (498)
T KOG0637|consen  442 QGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGG  473 (498)
T ss_pred             CCceeeeeeeeeeehhheeeccccchhhhcCC
Confidence            47777888888888888888878888888744

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=84.53  E-value=6.5  Score=35.33  Aligned_cols=25  Identities=12%  Similarity=-0.018  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHh
Q 017535          111 FLMALFVIASSLGGLFGGRMGDFLS  135 (370)
Q Consensus       111 ~~~~~~~~~~~ig~~~~g~l~dr~~  135 (370)
                      .+...-.+.+++..+++.+..+|+.
T Consensus        63 ~Vlladi~P~l~~Kl~aP~fi~~v~   87 (402)
T PF02487_consen   63 AVLLADILPSLLVKLIAPFFIHRVP   87 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHhhhhhcc
Confidence            3444445566677777888877764

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=83.85  E-value=4  Score=36.66  Aligned_cols=17  Identities=12%  Similarity=-0.056  Sum_probs=9.8

Q ss_pred             HHHHHhHHHHHHHHHHH
Q 017535          118 IASSLGGLFGGRMGDFL  134 (370)
Q Consensus       118 ~~~~ig~~~~g~l~dr~  134 (370)
                      +..++..++.|++..|+
T Consensus         6 i~~i~~ii~~G~~~~~~   22 (385)
T PF03547_consen    6 ILPIFLIILLGYLLGRF   22 (385)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            34444555666776665

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=83.78  E-value=4.4  Score=34.76  Aligned_cols=57  Identities=11%  Similarity=-0.085  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .+++.++++.-|+..|..+. +++--+.+-.+++.|-.+++.....-.+|..++..+.
T Consensus       342 i~ivf~lI~~EGLlGGasYV-NTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~la  398 (409)
T KOG3880|consen  342 IWIVFALILFEGLLGGASYV-NTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLA  398 (409)
T ss_pred             HHHHHHHHHHHhhcCchHHH-HHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHh
Confidence            55566667777887776666 5555666667888899999988877777766655443

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.79  E-value=40  Score=30.57  Aligned_cols=16  Identities=19%  Similarity=0.106  Sum_probs=8.5

Q ss_pred             ccccccCchhHHHHHH
Q 017535            5 TFMGIPGWRISFHIVG   20 (370)
Q Consensus         5 ~~~~~~gWr~~f~i~~   20 (370)
                      ++-.+..|-.+|--+-
T Consensus       219 ff~h~IHWfSIfNSfm  234 (593)
T KOG1277|consen  219 FFPHRIHWFSIFNSFM  234 (593)
T ss_pred             cccceeehhhHHHHHH
Confidence            3444556776664333

>KOG2568 consensus Predicted membrane protein [Function unknown]

Probab=81.68  E-value=45  Score=30.97  Aligned_cols=40  Identities=15%  Similarity=0.072  Sum_probs=17.8

Q ss_pred             HHhCCCHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHhhhCC
Q 017535          100 ELTGFSHEKTAFLMALFVI-ASSLGGLFGGRMGDFLSARFP  139 (370)
Q Consensus       100 ~~~g~s~~~~~~~~~~~~~-~~~ig~~~~g~l~dr~~~~~~  139 (370)
                      +..|.++.....+..+... =-.+..++.-.++-=+|.-++
T Consensus       260 N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP  300 (518)
T KOG2568|consen  260 NSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKP  300 (518)
T ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEec
Confidence            5567766555544444422 223334443333333444333

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=81.57  E-value=8.1  Score=35.60  Aligned_cols=37  Identities=3%  Similarity=-0.146  Sum_probs=24.2

Q ss_pred             CccchhccccCCCchhHHHHHHHHHHHHhhchhhHHH
Q 017535          193 TNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVV  229 (370)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (370)
                      .+-........+++.+-++.......++|-+++-.+.
T Consensus       138 AVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  138 AVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             eeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence            3344444556777788888777777777776665444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.04  E-value=14  Score=25.89  Aligned_cols=36  Identities=22%  Similarity=0.141  Sum_probs=29.4

Q ss_pred             CCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCC
Q 017535          204 EKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF  239 (370)
Q Consensus       204 ~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~  239 (370)
                      +..++.+.++-...-.+++.+.....||+.|++.|-
T Consensus        37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agT   72 (116)
T COG5336          37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGT   72 (116)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            455778888888888899988889999999998553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	370
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	4e-10
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 59.7 bits (145), Expect = 4e-10
 Identities = 33/239 (13%), Positives = 81/239 (33%), Gaps = 20/239 (8%)

Query: 11  GWRISFHIVGLISVVVGTLVRLFANDPH----FPDGGTANSDQVSSKSFRSDVKVLIQEA 66
            W  + ++    +++V         D       P      +D     + +++ ++  ++ 
Sbjct: 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 243

Query: 67  --KSVIKIPSF-QIIVAQGVTGSFPWSALSFAAMWLELT-GFSHEKTAFLMALFVIASSL 122
             + V+       I +A        +  L ++  +L+    F+ +K+++   L+  A   
Sbjct: 244 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303

Query: 123 GGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVT 182
           G L  G    ++S +     R                +  +    +P+  +   + ++V 
Sbjct: 304 GTLLCG----WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDM---ICMIVI 356

Query: 183 GLFISWNAPATN-NPIFAEIVPEKSRTSVYAMDRSFESIL-SSFAPPVVGILAQHVYGF 239
           G  I    P         E+ P+K+  +       F  +  S  A  +VG      +G+
Sbjct: 357 GFLI--YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGW 412

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 36/252 (14%), Positives = 69/252 (27%), Gaps = 38/252 (15%)

Query: 89  WSALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQ 148
               + A  +L   GFS     F ++   IA        G + D  +       R+ L  
Sbjct: 44  RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP------RVFLPA 97

Query: 149 ISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRT 208
              L+A     L +  +P   S+  +  ++L + G F     P            +K R 
Sbjct: 98  GLILAAA--VMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP-CGRTMVHWWSQKERG 154

Query: 209 SVYAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYT 268
            + ++     ++     P +  +       +                         A   
Sbjct: 155 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDW------------------------HAALY 190

Query: 269 AIGIPMALCCFIYSFLYSTYPRDRERARMEALIESEMQQLESSNLPAAVEYSHVQFSESE 328
                  L       +    P+      +E   E +    +  N  A  E +  Q     
Sbjct: 191 MPAFCAILVALFAFAMMRDTPQSCGLPPIE---EYKNDYPDDYNEKAEQELTAKQIFMQY 247

Query: 329 VLSVKNRTVIEM 340
           VL   N+ +  +
Sbjct: 248 VL--PNKLLWYI 257

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 2e-07
 Identities = 50/375 (13%), Positives = 107/375 (28%), Gaps = 103/375 (27%)

Query: 46  NSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPWS-------------AL 92
           N +QV +K   S ++  ++  ++++++   + ++  GV GS                  +
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 93  SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSL 152
            F   WL L    +     L  L  +   +   +  R  D  S+        I A++  L
Sbjct: 181 DFKIFWLNL-KNCNSPETVLEMLQKLLYQIDPNWTSR-SDH-SSNIKLRIHSIQAELRRL 237

Query: 153 SAIPLAALLLLVLPD--DPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSV 210
                    LLVL +  +                   WNA       F  +     +  +
Sbjct: 238 LKSKPYENCLLVLLNVQNAKA----------------WNA-------F-NL---SCKILL 270

Query: 211 YAMDRSFESILSSFAPPVVGILAQHVYGFKPIPKGSSATEEIATDRANAASLAKALYTAI 270
               +     LS+     +  L  H     P        + +         L K L    
Sbjct: 271 TTRFKQVTDFLSAATTTHI-SLDHHSMTLTP-----DEVKSL---------LLKYLDCRP 315

Query: 271 ---------GIPMALCCFIYSFL---------YSTYPRDRERARMEALIE----SEMQQL 308
                      P  L   I   +         +     D+    +E+ +     +E +++
Sbjct: 316 QDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374

Query: 309 --------ESSNLPAAV-----EYSHVQFSESEVLSVKNRTVIEMDYD----YEDGLDLD 351
                    S+++P  +                V  +   +++E            + L+
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 352 ---DNDEKILLYRQL 363
                + +  L+R +
Sbjct: 435 LKVKLENEYALHRSI 449

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	370
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.82
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.74
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.61
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.6
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.59
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.52
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.42
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.42
2xut_A	524	Proton/peptide symporter family protein; transport	99.36
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.22
2xut_A	524	Proton/peptide symporter family protein; transport	99.11
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.83

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.82  E-value=3e-19  Score=162.08  Aligned_cols=223  Identities=16%  Similarity=0.193  Sum_probs=147.3

Q ss_pred             cccccccC-chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCC-CCcccc-C--cc-cchhhhhhHH-HHhhhccchHHH
Q 017535            4 MTFMGIPG-WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTA-NSDQVS-S--KS-FRSDVKVLIQ-EAKSVIKIPSFQ   76 (370)
Q Consensus         4 ~~~~~~~g-Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~-~~~~~~~~~~-~~~~~~~~~~~~   76 (370)
                      +++.+.+| ||++|++.++++++..++.++++||+++...... ++.+.. +  .. ..++.....+ ..+.++++|.++
T Consensus       176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (451)
T 1pw4_A          176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLW  255 (451)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHH
Confidence            34456678 9999999999988887777777777433221111 110000 0  00 0000000111 135788899876


Q ss_pred             HHHHHHhhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--hhhCCCchhHHHHHHHHH
Q 017535           77 IIVAQGVTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFL--SARFPNSGRIILAQISSL  152 (370)
Q Consensus        77 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~--~~~~~~~~~~~~~~~~~~  152 (370)
                      ...+..++... .+....+.|.|+ +.+|+++.+.+++.+...++.+++.++.|++.||+  ++|+.       ..++..
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~-------~~~~~~  328 (451)
T 1pw4_A          256 YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA-------TGVFFM  328 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH-------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-------HHHHHH
Confidence            65554444444 355558899999 55899999999999999999999999999999998  77754       222222


Q ss_pred             HHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHH-hhchhhHHHHH
Q 017535          153 SAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESI-LSSFAPPVVGI  231 (370)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~g~  231 (370)
                      +...+ ....+..... ...+.+.+..++.|++.+...+ ...+++.+.+|++.||++.|+.+.+.++ ++.++|.+.|.
T Consensus       329 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~  405 (451)
T 1pw4_A          329 TLVTI-ATIVYWMNPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY  405 (451)
T ss_dssp             HHHHH-HHHHTTSCCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHhcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211 2222222221 1244455566667776666555 5678889999999999999999999999 99999999999


Q ss_pred             HHHhh
Q 017535          232 LAQHV  236 (370)
Q Consensus       232 l~~~~  236 (370)
                      +.+..
T Consensus       406 l~~~~  410 (451)
T 1pw4_A          406 TVDFF  410 (451)
T ss_dssp             HHHSS
T ss_pred             HHHhc
Confidence            99986

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.74  E-value=2.1e-16  Score=142.77  Aligned_cols=204  Identities=14%  Similarity=0.145  Sum_probs=136.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhh-hHH
Q 017535           12 WRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSF-PWS   90 (370)
Q Consensus        12 Wr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   90 (370)
                      ||+.|++.+++.++..++.++ .+.|+.++..+++++   +       ....+.+++++|+|.++...+..++... .+.
T Consensus       208 w~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (438)
T 3o7q_A          208 VQTPYMIIVAIVLLVALLIML-TKFPALQSDNHSDAK---Q-------GSFSASLSRLARIRHWRWAVLAQFCYVGAQTA  276 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CCCCCCTTTCCCCSS---T-------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HcCCccccccccccc---c-------cchhhhHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            999999888877766655443 333333221111110   0       2334556788999997665554444443 455


Q ss_pred             HHHHHHHH-HH-HhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCC
Q 017535           91 ALSFAAMW-LE-LTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDD  168 (370)
Q Consensus        91 ~~~~~~~~-~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (370)
                      ...|+|.| ++ .+|++..+++.+.+...++.+++.++.|+++||+++|+.       ..++.++.... .+.+...   
T Consensus       277 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-------~~~~~~~~~~~-~~~~~~~---  345 (438)
T 3o7q_A          277 CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-------LAAYALIAMAL-CLISAFA---  345 (438)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHH-HHHHHHC---
T ss_pred             HHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHHHHHHHHHH-HHHHHHc---
Confidence            55899999 74 469999999999999999999999999999999998865       23333333222 2222211   


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  242 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~  242 (370)
                      +. .+ ..+..++.|++.+...| ..+++..+.+|++ ++.+.++.. ...+++.++|.+.|++.|..+++...
T Consensus       346 ~~-~~-~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~  414 (438)
T 3o7q_A          346 GG-HV-GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA  414 (438)
T ss_dssp             CH-HH-HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred             CC-cH-HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            11 22 23334566666666666 6788878888876 888888877 67799999999999999998335543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.61  E-value=1.7e-15  Score=136.00  Aligned_cols=207  Identities=8%  Similarity=0.046  Sum_probs=120.4

Q ss_pred             cCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhhH
Q 017535           10 PGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFPW   89 (370)
Q Consensus        10 ~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (370)
                      .+||+.|++.+++.++..++.++..||+++... .++..+.++ .     +...+++++++++|.++......+.....+
T Consensus       164 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (417)
T 2cfq_A          164 INNQFVFWLGSGCALILAVLLFFAKTDAPSSAT-VANAVGANH-S-----AFSLKLALELFRQPKLWFLSLYVIGVSCTY  236 (417)
T ss_dssp             HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSC-SSSSSSSCC-C-----CCCHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hchhHHHHHHHHHHHHHHHHHHHcCcccccccc-ccccccccc-c-----cccHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence            589999998776654443333333333321110 000000000 0     112234567888888665544433333333


Q ss_pred             -HHHHHHHHHH-HHhCC---CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 017535           90 -SALSFAAMWL-ELTGF---SHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLV  164 (370)
Q Consensus        90 -~~~~~~~~~~-~~~g~---s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (370)
                       ....++|.|+ +.++.   +....+++.++..++.+++.++.|+++||+++|+.       ...+..+.. +. .....
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-------l~~~~~~~~-~~-~~~~~  307 (417)
T 2cfq_A          237 DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-------LLLAGTIMS-VR-IIGSS  307 (417)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-------HHHHHHHHH-HH-HHHHT
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-------HHHHHHHHH-HH-HHHHH
Confidence             3336788887 43432   23455677777778888999999999999998865       232222222 11 11221


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH-HHHHHHHhhchhhHHHHHHHHhh
Q 017535          165 LPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM-DRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ..  .. .+.+.+..++.+++.+...+ ..+.+..|..|++.||++.++ ++....+|+.++|.+.|++.+..
T Consensus       308 ~~--~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~  376 (417)
T 2cfq_A          308 FA--TS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             TC--CS-HHHHHHHTTHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS
T ss_pred             Hh--cc-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc
Confidence            22  22 22233333344444433333 446788999999999999999 48888999999999999998865

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.60  E-value=9.5e-17  Score=142.06  Aligned_cols=207  Identities=13%  Similarity=0.061  Sum_probs=138.5

Q ss_pred             ccccccccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHH
Q 017535            3 PMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQG   82 (370)
Q Consensus         3 g~~~~~~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (370)
                      ++++.+.+|||+.|++.+++.++..++..+..||+++.+.+++               +..+.+++++|+|.++......
T Consensus       144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~  208 (375)
T 2gfp_A          144 GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRT---------------RLLTSYKTLFGNSGFNCYLLML  208 (375)
T ss_dssp             HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCC---------------CTTTCSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccc---------------cHHHHHHHHhcCcchHHHHHHH
Confidence            4556677899999999988887766655556666432221110               0111234567778866555444


Q ss_pred             hhhhh-hHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHH-HHHHHH
Q 017535           83 VTGSF-PWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLS-AIPLAA  159 (370)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~-~~~~~~  159 (370)
                      +.... .+....+.|.|+ +.+|+++.+.+.+.....++.+++.++.+++.||++++.         ..+... ......
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~---------~~~~~~~~~~~~~  279 (375)
T 2gfp_A          209 IGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM---------WQSVICCLLAGLL  279 (375)
T ss_dssp             HHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH---------HHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence            44333 345557888888 558999999999999999999999999999999988731         111111 100000


Q ss_pred             HHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          160 LLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ....... .....+.+.+..++.|++.+...+ ...+++.+..| ++||++.|+.+...+++..++|.+.|.+.+..
T Consensus       280 ~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          280 MWIPDWF-GVMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             SSHHHHH-HHHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             HHHHhhh-ccccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            0000000 011233444556677788788788 88899999888 78999999999999999999999999987764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.59  E-value=9.8e-16  Score=140.56  Aligned_cols=141  Identities=13%  Similarity=0.011  Sum_probs=95.6

Q ss_pred             HHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHH-HH--hCC-
Q 017535           92 LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALL-LL--VLP-  166 (370)
Q Consensus        92 ~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~-  166 (370)
                      ..++|.|+ +..+.+....+.+.....++.+++.++.+++.||++||+...  ...+.++..+........ +.  ... 
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (491)
T 4aps_A          303 SVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS--PTKFAVGLMFAGLSFLLMAIPGALYGT  380 (491)
T ss_dssp             GTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C--HHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred             cHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc--hHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            35678888 557777667778888888899999999999999999886521  111112222221111111 10  001 


Q ss_pred             CCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          167 DDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       167 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ......+...+..++.|++.+...+ ..++++.+..|++.||++.|+.+...++|..+++.+.+.+.+.
T Consensus       381 ~~~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~  448 (491)
T 4aps_A          381 SGKVSPLWLVGSWALVILGEMLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK  448 (491)
T ss_dssp             CTTCCTHHHHHHHHHHHHHHHTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1122234455666777888887777 7889999999999999999999999999999999988876654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.52  E-value=2.3e-13  Score=124.70  Aligned_cols=149  Identities=14%  Similarity=0.138  Sum_probs=111.3

Q ss_pred             HHHHHHH-HhhhhhhHHHHHHHHHHH-HH-----hCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhhhCCCchhHHH
Q 017535           75 FQIIVAQ-GVTGSFPWSALSFAAMWL-EL-----TGFSHEKTAFLMALFVIASSLGGLFGGRMGDF-LSARFPNSGRIIL  146 (370)
Q Consensus        75 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~~  146 (370)
                      ++.+... ++.....+....+++.|+ +.     +|++..+.+++.+...++..++.+++|+++|| +|||+.       
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-------   87 (491)
T 4aps_A           15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-------   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-------
Confidence            4444333 333444455667889998 66     89999999999999999999999999999999 899975       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCc--hhHHHHHHHHHHHHhhch
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKS--RTSVYAMDRSFESILSSF  224 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~  224 (370)
                      +.++.++.... .+.. ....+   .+.+.+..++.|++.+...+ ...+++.|.+|+++  |+.+.++.+...++|..+
T Consensus        88 ~~~~~~~~~~~-~~~~-~~~~~---~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  161 (491)
T 4aps_A           88 VFWGGVLIMLG-HIVL-ALPFG---ASALFGSIILIIIGTGFLKP-NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFI  161 (491)
T ss_dssp             HHHHHHHHHHH-HHHH-HSCCS---TTHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHH-HHhhh---HHHHHHHHHHHHHHHHhccc-hHHHHHHHHcCcccccceeeehHHHHHHHHHHHH
Confidence            33333333222 2222 23222   33455667778888777777 78899999999988  778888899999999999


Q ss_pred             hhHHHHHHHHhh
Q 017535          225 APPVVGILAQHV  236 (370)
Q Consensus       225 ~~~~~g~l~~~~  236 (370)
                      +|.+.+.+.+..
T Consensus       162 ~~~~~~~l~~~~  173 (491)
T 4aps_A          162 APLIVGAAQEAA  173 (491)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhh
Confidence            999999998876

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.49  E-value=2.4e-13  Score=124.65  Aligned_cols=137  Identities=13%  Similarity=0.115  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHH-HHHHHhCCCC
Q 017535           90 SALSFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLA-ALLLLVLPDD  168 (370)
Q Consensus        90 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  168 (370)
                      ....|.|.+.+..+.+.........+..+..+++.++++++.||+|||+.       ...+........ .+........
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-------~~~~~~~~~~~~~~l~~~~~~~~  367 (491)
T 4gc0_A          295 VVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-------QIIGALGMAIGMFSLGTAFYTQA  367 (491)
T ss_dssp             HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-------hccchHHHHHHHHHHHHHHhccc
Confidence            33356677778889888888888888889999999999999999999975       222222221111 1111112222


Q ss_pred             CChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          169 PSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       169 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      ......+.+.++..++..+ ..+ ..+.+..|.+|.+.|+++.|+.+.+.++++.+++.+.+.+.+.
T Consensus       368 ~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~  432 (491)
T 4gc0_A          368 PGIVALLSMLFYVAAFAMS-WGP-VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN  432 (491)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-TTH-HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred             chHHHHHHHHHHHHHHHhH-HHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2212222222222222222 234 5678899999999999999999999999999999888777654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.42  E-value=1.4e-12  Score=117.59  Aligned_cols=132  Identities=13%  Similarity=0.033  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH-hCCCCCCh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL-VLPDDPST  171 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  171 (370)
                      ..+|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+.       +.++.++......+... ..   ...
T Consensus        47 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~~~~---~~~  116 (438)
T 3o7q_A           47 ILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-------IITGLFLYALGAALFWPAAE---IMN  116 (438)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHHHHH---TTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-------HHHHHHHHHHHHHHHHhccc---ccc
Confidence            56677668999999999999999999999999999999999999976       33333333222222210 11   122


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      .+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+.+...
T Consensus       117 ~~~l~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          117 YTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55567778888988888877 7899999999999999999999999999999999999998843

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.42  E-value=1.8e-12  Score=117.28  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=105.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC-CCCh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD-DPST  171 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  171 (370)
                      .++|.+.+++ .+..+.+++.+...++..++.++.|+++||+|||+.       +.++.++.......... .+. ... 
T Consensus        49 ~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-------l~~~~~~~~~~~~~~~~-~~~~~~~-  118 (451)
T 1pw4_A           49 LAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILAAAVMLFMGF-VPWATSS-  118 (451)
T ss_dssp             HHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHH-CHHHHSS-
T ss_pred             HHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-------HHHHHHHHHHHHHHHHh-hhhcccc-
Confidence            5667777777 999999999999999999999999999999999975       33333333222222211 000 011 


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcC-CCCC
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYG-FKPI  242 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g-~~~~  242 (370)
                      .+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..++|.+.+++.+.. | |...
T Consensus       119 ~~~l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~  188 (451)
T 1pw4_A          119 IAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAA  188 (451)
T ss_dssp             SSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTC
T ss_pred             HHHHHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHH
Confidence            23456667888888887777 77899999999999999999999999999999999999988877 5 6655

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.36  E-value=3.8e-12  Score=117.61  Aligned_cols=147  Identities=14%  Similarity=0.011  Sum_probs=109.3

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHH-HHhC------CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hhhCCCchhHHHHHH
Q 017535           78 IVAQGVTGSFPWSALSFAAMWL-ELTG------FSHEKTAFLMALFVIASSLGGLFGGRMGDFL-SARFPNSGRIILAQI  149 (370)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~  149 (370)
                      .+..++.....+....+++.|+ +++|      ++..+.+++.+...++..++.+++|+++||+ |||+.       +.+
T Consensus        18 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-------~~~   90 (524)
T 2xut_A           18 IASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-------ILW   90 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-------HHH
Confidence            3444444444456667888888 6789      9999999999999999999999999999999 98865       333


Q ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHH---HHHHHHHhhchhh
Q 017535          150 SSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAM---DRSFESILSSFAP  226 (370)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~  226 (370)
                      +.++..+.... ... .  ....+.+.+..++.|++.+...+ ...+++.+.+|+++|+.+.+.   .+...++|..++|
T Consensus        91 ~~~~~~~~~~~-~~~-~--~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~  165 (524)
T 2xut_A           91 LSLIYCVGHAF-LAI-F--EHSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS  165 (524)
T ss_dssp             HHHHHHHHHHH-HHH-T--SSCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HHH-h--cccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222222 211 1  11244566677888888887777 778999999999999776666   8888999999999


Q ss_pred             HHHHHHHHhh
Q 017535          227 PVVGILAQHV  236 (370)
Q Consensus       227 ~~~g~l~~~~  236 (370)
                      .+.+++.+..
T Consensus       166 ~~~~~l~~~~  175 (524)
T 2xut_A          166 LSMPLLLKNF  175 (524)
T ss_dssp             HTSTHHHHTS
T ss_pred             HHHHHHhccc
Confidence            9999988765

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=3.5e-12  Score=112.61  Aligned_cols=131  Identities=10%  Similarity=0.036  Sum_probs=103.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChh
Q 017535           93 SFAAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTP  172 (370)
Q Consensus        93 ~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (370)
                      ..+|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.       ..++..+...........     ...
T Consensus        21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-------~~~~~~~~~~~~~~~~~~-----~~~   88 (375)
T 2gfp_A           21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPV-------ILVGMSIFMLATLVAVTT-----SSL   88 (375)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCC-------CHHHHHHHHHHHHHHHHH-----HHH
T ss_pred             hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHHHHHHHh-----ccH
Confidence            45677678899999999999999999999999999999999999987       233333222222221111     134


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      +.+.+..++.|++.+...+ ...+++.|..|+++|+++.++.+....+|..++|.+.+++.+..
T Consensus        89 ~~l~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  151 (375)
T 2gfp_A           89 TVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMW  151 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHH
T ss_pred             HHHHHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence            5566677788888877777 77889999999999999999999999999999999999887765

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.22  E-value=8.4e-11  Score=107.63  Aligned_cols=122  Identities=13%  Similarity=0.067  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCC--------------CCCh
Q 017535          106 HEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPD--------------DPST  171 (370)
Q Consensus       106 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~  171 (370)
                      ....+++.+.+.++.++|.+++|+++||+|||+.       +.++.++..+....... .+.              ...+
T Consensus        54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-------l~~~~~l~~i~~i~~a~-~~~~~~~~~~~~~~~~~~a~~  125 (491)
T 4gc0_A           54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-------LKIAAVLFFISGVGSAW-PELGFTSINPDNTVPVYLAGY  125 (491)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-------HHHHHHHHHHHHHHHHC-TTTTTSCSSSSSSCCGGGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-------HHHHHHHHHHHHHHHHH-HhhhhhhhcchhHHHHHHhhh
Confidence            3456778888899999999999999999999976       33333332222211111 000              1223


Q ss_pred             hHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhh
Q 017535          172 PVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       172 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      .+.+.+..++.|++.|...+ ...+++.|..|++.|+...++.+....+|..+++.+...+....
T Consensus       126 ~~~l~~~R~l~G~g~G~~~~-~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~  189 (491)
T 4gc0_A          126 VPEFVIYRIIGGIGVGLASM-LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSG  189 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccc
Confidence            56678889999999988888 88999999999999999999999998888888877766665543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.11  E-value=8.4e-11  Score=108.60  Aligned_cols=62  Identities=5%  Similarity=-0.114  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHh
Q 017535          173 VMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQH  235 (370)
Q Consensus       173 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~  235 (370)
                      +.+.+..++.|++.+...+ ..++++.+..|++.||+++|+.++..++|+.++|.+.|.+.+.
T Consensus       406 ~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          406 FWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3445556677777776666 6788899999999999999999999999999999999988764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.83  E-value=9.9e-11  Score=104.86  Aligned_cols=155  Identities=16%  Similarity=0.139  Sum_probs=91.9

Q ss_pred             hhccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHH
Q 017535           68 SVIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRII  145 (370)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~  145 (370)
                      +.+|+|.++......+.....++.. .++|.|+ +++|+++.+.+++.+...++..++.++.|+++||+|||+.      
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~------   75 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------   75 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCH------
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------
Confidence            4688999776665554444444433 6889999 5689999999999999999999999999999999999976      


Q ss_pred             HHHHHHHHHHHH--HHH--HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCC--CchhHHHHHHHHHHH
Q 017535          146 LAQISSLSAIPL--AAL--LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPE--KSRTSVYAMDRSFES  219 (370)
Q Consensus       146 ~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~  219 (370)
                       ..++..+....  ...  .+........ .....+..+..|+..+.     ......+..++  +.++...|..+....
T Consensus        76 -l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~  148 (417)
T 2cfq_A           76 -LLWIITGMLVMFAPFFIFIFGPLLQYNI-LVGSIVGGIYLGFCFNA-----GAPAVEAFIEKVSRRSNFEFGRARMFGC  148 (417)
T ss_dssp             -HHHHHHHTTSCHHHHHHHTHHHHHHTTC-CHHHHGGGSSTTHHHHT-----THHHHHHHHHHHHHHHTCCHHHHSSSTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----hHHHHHHHHHHhhhhcccchHHHHHHHH
Confidence             23222221110  000  0000000000 01111111111222211     12222222222  345666777777788


Q ss_pred             HhhchhhHHHHHHHHh
Q 017535          220 ILSSFAPPVVGILAQH  235 (370)
Q Consensus       220 ~~~~~~~~~~g~l~~~  235 (370)
                      +|..++|.+.+++.+.
T Consensus       149 ~g~~~~~~l~~~l~~~  164 (417)
T 2cfq_A          149 VGWALGASIVGIMFTI  164 (417)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8889999999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	370
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.003

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 24/242 (9%), Positives = 61/242 (25%), Gaps = 4/242 (1%)

Query: 1   MAPMTFMGIPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVK 60
                        +      L+++    ++R        P      +D     + +++ +
Sbjct: 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQE 234

Query: 61  VLIQEAKSVIKIPSFQIIVAQGVTGSFPWSALSFAAMWLELTGFSHEKTAFLMALFVIAS 120
           +    AK +         +   +  +  +  L    +      +  E   F +     A 
Sbjct: 235 L---TAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAY 291

Query: 121 SLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLV 180
            L    G               R             +    ++   +    P +  + ++
Sbjct: 292 FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351

Query: 181 VTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFK 240
           V G  I             E+ P+K+  +       F  +  S A   +       +G+ 
Sbjct: 352 VIGFLIYGPVMLIG-LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD 410

Query: 241 PI 242
             
Sbjct: 411 GG 412

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 24/172 (13%), Positives = 53/172 (30%), Gaps = 10/172 (5%)

Query: 70  IKIPSFQIIVAQGVTGSFPWSA-LSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFG 127
           +K  +F +         F   A   F  +WL ++   S   T  + A   + S L     
Sbjct: 4   LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLF 63

Query: 128 GRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFIS 187
           G + D L  R     + +L     ++ + +      +    P       +  +V G+++ 
Sbjct: 64  GLLSDKLGLR-----KYLLW---IITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLG 115

Query: 188 WNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGF 239
           +   A    + A I     R++           +       +  +   +   
Sbjct: 116 FCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQ 167

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	370
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.61
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.52
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.25

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=4.2e-18  Score=151.99  Aligned_cols=220  Identities=14%  Similarity=0.168  Sum_probs=144.7

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC-Ccccc-----CcccchhhhhhHHHHhhhccchHHHHHHHH-
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTAN-SDQVS-----SKSFRSDVKVLIQEAKSVIKIPSFQIIVAQ-   81 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (370)
                      ..+||+.|++.+++.++..++.+++++++++....... +.+..     .+...+.........+..+++|.++..... 
T Consensus       179 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (447)
T d1pw4a_         179 FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN  258 (447)
T ss_dssp             TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHH
T ss_pred             hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHh
Confidence            35899999999999988888888888875433221111 11000     000001111222334577888886665544 


Q ss_pred             HhhhhhhHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHH
Q 017535           82 GVTGSFPWSALSFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAAL  160 (370)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (370)
                      ++.....+....|.|.|+ +.++++..+.+.......++.+++.+++|++.||+++++..      ..............
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~~~~~~  332 (447)
T d1pw4a_         259 VFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG------ATGVFFMTLVTIAT  332 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH------HHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccc------cccchhHHHHHHHH
Confidence            444444466668899999 77899999999999999999999999999999999887541      11111111111122


Q ss_pred             HHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhh-chhhHHHHHHHHhh
Q 017535          161 LLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILS-SFAPPVVGILAQHV  236 (370)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~g~l~~~~  236 (370)
                      ...... .....+...+..+..|++.+...+ ....+..+.+|++.+|++.|+.+++.++++ .++|.+.|++.|..
T Consensus       333 ~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~  407 (447)
T d1pw4a_         333 IVYWMN-PAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF  407 (447)
T ss_dssp             HHTTSC-CTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhc-ccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            222122 222344455566667776655555 567888999999999999999999988865 66899999999987

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=6.6e-15  Score=129.01  Aligned_cols=208  Identities=7%  Similarity=0.015  Sum_probs=122.1

Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccCcccchhhhhhHHHHhhhccchHHHHHHHHHhhhhhh
Q 017535            9 IPGWRISFHIVGLISVVVGTLVRLFANDPHFPDGGTANSDQVSSKSFRSDVKVLIQEAKSVIKIPSFQIIVAQGVTGSFP   88 (370)
Q Consensus         9 ~~gWr~~f~i~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (370)
                      ..+|++.+........+..++.++..++++......+++++..+       .......+..++++..+............
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (417)
T d1pv7a_         163 TINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHS-------AFSLKLALELFRQPKLWFLSLYVIGVSCT  235 (417)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCC-------CCCHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhcc-------cccccccccccccccccchhhhhHHHHHH
Confidence            35677777777777777666666666664333222211111111       11112223344444433332222222222


Q ss_pred             HHH-HHHHHHHH----HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHH
Q 017535           89 WSA-LSFAAMWL----ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLL  163 (370)
Q Consensus        89 ~~~-~~~~~~~~----~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (370)
                      +.. ....+.+.    ...+.+....+.......++..++..+.+++.||.++++.       ..++..+.... .+.+ 
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~-------~~~~~~~~~~~-~~~~-  306 (417)
T d1pv7a_         236 YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-------LLLAGTIMSVR-IIGS-  306 (417)
T ss_dssp             HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHH-------HHHHHHHHHHH-HHHH-
T ss_pred             HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccc-------hhhhHHHHHHh-hhcc-
Confidence            111 12222222    2233455566777777788899999999999999998865       33332222222 2222 


Q ss_pred             hCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHH-HHHHHHhhchhhHHHHHHHHhh
Q 017535          164 VLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMD-RSFESILSSFAPPVVGILAQHV  236 (370)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~g~l~~~~  236 (370)
                      ...  +. .+.+.+..++.|++.+...+ ...+++.+.+|++.|+++.++. ++...+|..++|.+.|++.|..
T Consensus       307 ~~~--~~-~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~  376 (417)
T d1pv7a_         307 SFA--TS-ALEVVILKTLHMFEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             HTC--CC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             ccc--cc-cchhhHHHHHHHHHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            122  22 34455566667777776666 7788999999999999999985 4567789999999999999987

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=5.7e-15  Score=131.32  Aligned_cols=139  Identities=15%  Similarity=0.170  Sum_probs=103.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCChhHH
Q 017535           95 AAMWLELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIILAQISSLSAIPLAALLLLVLPDDPSTPVM  174 (370)
Q Consensus        95 ~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (370)
                      ...++++.|+|..+.|++.+...++..++.+++|+++||+|||+.       +.++.++......+... .+......+.
T Consensus        47 ~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~  118 (447)
T d1pw4a_          47 AMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-------LPAGLILAAAVMLFMGF-VPWATSSIAV  118 (447)
T ss_dssp             HHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-------HHHHHHHHHHHHHHHHH-CHHHHSSSSH
T ss_pred             HHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-------HHHHHHHHHHHHhhccc-cchhhhhHHH
Confidence            334555689999999999999999999999999999999999975       33333332222211111 1101111334


Q ss_pred             HHHHHHHHHHHHHhcCCCCccchhccccCCCchhHHHHHHHHHHHHhhchhhHHHHHHHHhhcCCCCC
Q 017535          175 HGLVLVVTGLFISWNAPATNNPIFAEIVPEKSRTSVYAMDRSFESILSSFAPPVVGILAQHVYGFKPI  242 (370)
Q Consensus       175 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~g~~~~  242 (370)
                      +.+..++.|++.+...+ ...+++.+.+|+++|+.+.++.+....+|..+++.+.+.+.+..++|...
T Consensus       119 ~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~  185 (447)
T d1pw4a_         119 MFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA  185 (447)
T ss_dssp             HHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred             HHHHHHHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence            56667778888777777 77889999999999999999999999999999999999888877565554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.5e-12  Score=109.98  Aligned_cols=159  Identities=16%  Similarity=0.177  Sum_probs=94.0

Q ss_pred             hccchHHHHHHHHHhhhhhhHHHH-HHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhCCCchhHHH
Q 017535           69 VIKIPSFQIIVAQGVTGSFPWSAL-SFAAMWL-ELTGFSHEKTAFLMALFVIASSLGGLFGGRMGDFLSARFPNSGRIIL  146 (370)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~  146 (370)
                      .+|||++|.+....+.....++.. .++|.|+ +++|+|+.+.|++.+...++..++.++.|+++||+|||+.       
T Consensus         3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~-------   75 (417)
T d1pv7a_           3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY-------   75 (417)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTH-------
T ss_pred             cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-------
Confidence            578999888777666666555544 6889888 7799999999999999999999999999999999999976       


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhcCCCCccchhccccC--CCchhHHHHHHHHHHHHhhch
Q 017535          147 AQISSLSAIPLAALLLLVLPDDPSTPVMHGLVLVVTGLFISWNAPATNNPIFAEIVP--EKSRTSVYAMDRSFESILSSF  224 (370)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~  224 (370)
                      +.++.............. .................+...+.... ..........+  .+.+....+........+..+
T Consensus        76 l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (417)
T d1pv7a_          76 LLWIITGMLVMFAPFFIF-IFGPLLQYNILVGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL  153 (417)
T ss_dssp             HHHHHHHHHHTHHHHHHH-THHHHHHTTCHHHHHHTTTTGGGGGT-THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhccccccc-chhhcccccccchhhhhHHHHHHHhhhhcccccc
Confidence            233222222111111111 10000000011111222222222222 11111111111  123445566677777788888


Q ss_pred             hhHHHHHHHHhh
Q 017535          225 APPVVGILAQHV  236 (370)
Q Consensus       225 ~~~~~g~l~~~~  236 (370)
                      ++.+.+.+.+..
T Consensus       154 ~~~~~~~l~~~~  165 (417)
T d1pv7a_         154 GASIVGIMFTIN  165 (417)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             cccccccccccc
Confidence            999888887764