Citrus Sinensis ID: 017543

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Secondary Structure (PSIPRED)
ccccccccccHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccEEcccccccccccccEEcccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHccccEEccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccccccccccEEcccccccccccccccccccccEEEEccccccEEcccHHccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHcHHHHHHHHHccccccHHEEEEEEEEccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccHHHcccccccccccccccccccEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEcccccccHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHccccHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHccccccccccHHHHHHHHHEEEcccccccccccccccccHHHHEEccccccHHccccccccccccEEEEcccccEEEccccHHHHHHccEEEccccccHcccccHccHHHcccccc
Coil and Loop (DISEMBL)
mmrqslsdgsldtmarrpadpeeELRWMSQEvressprtsaasgddwRSAFdaaangpvslrsysrsasnghsrrysdpaengdvrsgsnsgsrrtpnregyrygYILHShahfdsyegvptaipsedtrdnfTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCkrvygqivlpvfygvdpapvkwptgsygdsfLKLEERFKENSEKLQTWRNALKEKIISACniftktpnpsfsqhLNTLVVLNlrdckslkslpagiHLEFLKeldlsgcsklkrlpdissaANIEEMFLngtaieelPSSIECLYKLLHldledckslkslpsglflcrnkcrir
Flexible Loop (DISEMBL)
mmrqslsdgsldtmarrpadpeeeLRWMsqevressprtsaasgddwRSAFDAAangpvslrsysrsasnghsrrysdpaengdvrsgsnsgsrrtpnrEGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKslkslpsglflcrnkcrir
Low Complexity Region (SEG)
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Disordered region (IsUnstruct)
****************************************************************************************************GYRYGYILHSHAHFDSYEGVPTAI*******NFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKC***
Disordered Region (DISOPRED)
**********************************************WRSAFDAAANGPVSLRSYSRSAS****************************************SHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER*****EKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Disordered Region (DISEMBL)
***********************ELRWM****************DDWRSAFDAAANGPVSLR**********************************PNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Disordered Region (DISPRO)
********************PEEELRWMSQEVRES*************************************************************************HSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMRQSLSDGSLDTMARRPADPEEELRWMSQEVRESSPRTSAASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.330	0.106	0.440	6e-25
O82500	1095	Putative disease resistan	no	no	0.352	0.118	0.421	2e-21
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.373	0.106	0.381	7e-18
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.346	0.311	0.385	4e-17
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.235	0.045	0.471	8e-16
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.327	0.341	0.338	1e-15
Q9SE83	914	Dynamin-2A OS=Arabidopsis	no	no	0.173	0.070	0.632	9e-14
Q9LQ55	920	Dynamin-2B OS=Arabidopsis	no	no	0.189	0.076	0.586	6e-12
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.322	0.303	0.354	1e-11
Q9SYC9	571	Vesicle-associated protei	no	no	0.365	0.236	0.292	3e-11

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  115 bits (288), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 5/127 (3%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASS 181
           EDTR  FTSHLY  L+ K I+TF     +  G  I   L  AIE S  ++++FSE YA+S
Sbjct: 21  EDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYATS 80

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           RW  ++LVKI++CK  + Q V+P+FY VDP+ V+    S+  +F + E ++K++ E +Q 
Sbjct: 81  RWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQR 140

Query: 242 WRNALKE 248
           WR AL E
Sbjct: 141 WRIALNE 147

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/140 (42%), Positives = 76/140 (54%), Gaps = 10/140 (7%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           ED R+NF SHL      K I TF    I R   I   L  AI  S IS+++FSE YASS 
Sbjct: 20  EDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGHELRAAIRESKISVVLFSENYASSS 79

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+L++I++CK   G  V+PVFY VDP+ ++  TG +G SF  LE    +  E+   W
Sbjct: 80  WCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSF--LETCCGKTEERQHNW 137

Query: 243 RNALKEKIISACNIFTKTPN 262
           R AL +    A NI    P 
Sbjct: 138 RRALTD----AANILGDHPQ 153

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/173 (38%), Positives = 93/173 (53%), Gaps = 35/173 (20%)

Query: 88  GSNSGSRRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIE 147
            S+SGSRR               +  F S+ G       ED RD+F SHL   L  K+I 
Sbjct: 4   ASSSGSRR---------------YDVFPSFRG-------EDVRDSFLSHLLKELRGKAI- 40

Query: 148 TFINRGDEISQS------LVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQI 201
           TFI+  DEI +S      L+ AI+ S I+++IFS+ YASS W  ++LV+I +C     Q+
Sbjct: 41  TFID--DEIERSRSIGPELLSAIKESRIAIVIFSKNYASSTWCLNELVEIHKCYTNLNQM 98

Query: 202 VLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSE-KLQTWRNALKEKIISA 253
           V+P+F+ VD + VK  TG +G  F   EE  K  SE + Q+W+ AL    + A
Sbjct: 99  VIPIFFHVDASEVKKQTGEFGKVF---EETCKAKSEDEKQSWKQALAAVAVMA 148

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/135 (38%), Positives = 75/135 (55%), Gaps = 7/135 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFINRGDEISQ---SLVDAIEASAISLIIFSEGYASSRW 183
           +D R  F S L  AL ++ I  FI+  +E  +   SL D I  S I+L+IFSEGY  S W
Sbjct: 31  KDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLISLFDTIGESKIALVIFSEGYCESHW 90

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             D+LVKI +       I++P+FY +D   VK  TG +GD+F  L ++++   +KL  W 
Sbjct: 91  CMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQPEPKKLHKWT 150

Query: 244 NALKEKIISACNIFT 258
            AL     S C +F+
Sbjct: 151 EAL----FSVCELFS 161

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 65/89 (73%), Gaps = 2/89 (2%)

Query: 272  LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL 331
            LV LNL+ C  L+++P+ + LE L+ L+LSGCSKL   P+IS   N++E+++ GT I+E+
Sbjct: 1307 LVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEIS--PNVKELYMGGTMIQEI 1364

Query: 332  PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            PSSI+ L  L  LDLE+ + LK+LP+ ++
Sbjct: 1365 PSSIKNLVLLEKLDLENSRHLKNLPTSIY 1393

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDA---IEASAISLIIFSEGYASSRW 183
           +D R+ F S L  A+ + +I  FI++ + +   LV+    I+ S ++++IFS+ Y SS W
Sbjct: 23  KDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLVNLFVRIQESRVAVVIFSKDYTSSEW 82

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             D+L +I  C    G   +P+FY + P+ V    G +GD+F  L+E++K + E+ Q W+
Sbjct: 83  CLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQ 142

Query: 244 NALK 247
            AL+
Sbjct: 143 EALE 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE83|DRP2A_ARATH Dynamin-2A OS=Arabidopsis thaliana GN=DRP2A PE=1 SV=2

 Score = 78.2 bits (191), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 49/68 (72%), Gaps = 4/68 (5%)

Query: 34  ESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRS-GSNS 91
           ESSPR S  +SGDDW +AF++AANGP    S S+  S GHSRRYSDPA+NGD  S GS S
Sbjct: 835 ESSPRASGGSSGDDWMNAFNSAANGPSD--SLSKYGSGGHSRRYSDPAQNGDAASPGSGS 892

Query: 92  GSRRTPNR 99
             R TPNR
Sbjct: 893 NRRTTPNR 900

Microtubule-associated force-producing protein involved in clathrin-mediated vesicle trafficking from the trans-Golgi network to the central vacuole. Able to bind and hydrolyze GTP. Binds specifically to phosphatidylinositol 3-phosphate (PtdIns3P).

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q9LQ55|DRP2B_ARATH Dynamin-2B OS=Arabidopsis thaliana GN=DRP2B PE=1 SV=2

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 5/75 (6%)

Query: 27  WMSQEVRESSPRTSA-ASGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDV 85
           W      ESSPRT+  +SG+DW +AF+AAA+GP SL+ Y    S GHSRRYSDPA+NG+ 
Sbjct: 835 WSDNSGTESSPRTNGGSSGEDWMNAFNAAASGPDSLKRY---GSGGHSRRYSDPAQNGED 891

Query: 86  RSGSNSGSRR-TPNR 99
            SGS   SRR TPNR
Sbjct: 892 SSGSGGSSRRTTPNR 906

Putative microtubule-associated force-producing protein, able to bind and hydrolyze GTP.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 5/124 (4%)

Query: 128 DTRDNFTSHLYSALSQKSIETFINR----GDEISQSLVDAIEASAISLIIFSEGYASSRW 183
           D R +F S L  AL + +I  FI+     G E++ +L+  IE S ++L+IFS  +  S  
Sbjct: 25  DVRKHFISFLVPALREANINVFIDENEFLGSEMA-NLLTRIEESELALVIFSVDFTRSHR 83

Query: 184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
             ++L KI + K     IV+P+FY V P+ VK+  G +GD+F  LE   +      Q W+
Sbjct: 84  CLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLEGKFGDNFRALERNNRHMLPITQKWK 143

Query: 244 NALK 247
            AL+
Sbjct: 144 EALE 147

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 104 YGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQS 159
           +G  L  +  F ++ G       ++ R++F   L  A+  + I  F +    RG  ++  
Sbjct: 351 HGITLPQYQVFINFRG-------DELRNSFVGFLVKAMRLEKINVFTDEVELRGTNLNY- 402

Query: 160 LVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTG 219
           L   IE S +++ IFSE Y  S W  D+LVK+ +       +V+PVFY ++    K   G
Sbjct: 403 LFRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMG 462

Query: 220 SYGDSFLKLEERFKENSEKLQTWRNAL 246
           ++GD+   LE  ++   E++Q W+ AL
Sbjct: 463 AFGDNLRNLEWEYRSEPERIQKWKEAL 489

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
255564976	944	TMV resistance protein N, putative [Rici	0.349	0.136	0.563	1e-33
351722793	299	TIR-NBS-LRR type disease resistance prot	0.355	0.438	0.521	1e-32
357486483	242	TMV resistance protein N [Medicago trunc	0.360	0.549	0.479	3e-32
255561496	876	TMV resistance protein N, putative [Rici	0.330	0.139	0.579	4e-32
223452607	409	resistance protein [Glycine max]	0.609	0.550	0.358	5e-32
449477815	320	PREDICTED: putative disease resistance p	0.346	0.4	0.521	5e-32
147780473	435	hypothetical protein VITISV_034310 [Viti	0.523	0.443	0.431	6e-32
357486467	200	TMV resistance protein N [Medicago trunc	0.379	0.7	0.466	1e-31
224123354	522	tir-nbs-lrr resistance protein [Populus	0.357	0.252	0.489	7e-31
224127917	1470	tir-nbs-lrr resistance protein [Populus	0.341	0.085	0.552	7e-31

>gi|255564976|ref|XP_002523481.1| TMV resistance protein N, putative [Ricinus communis] gi|223537309|gb|EEF38940.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 4/133 (3%)

Query: 120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASAISLIIFS 175
           V  +   EDTRDNFTSHLY+AL QK I+ F++    RG+EIS +LV  IE S +S+IIFS
Sbjct: 18  VFVSFRGEDTRDNFTSHLYAALHQKQIKAFVDDKLSRGEEISAALVKVIEESMVSVIIFS 77

Query: 176 EGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKEN 235
           E YA S W  D+LVKIL+CK+  GQIVLPVFY VDP+ V    G +G +F++ E+ FKE 
Sbjct: 78  ENYAFSPWCLDELVKILECKKTVGQIVLPVFYHVDPSDVAEQKGGFGAAFIEHEKCFKER 137

Query: 236 SEKLQTWRNALKE 248
            +KLQ WR AL E
Sbjct: 138 IDKLQKWRAALTE 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722793|ref|NP_001237768.1| TIR-NBS-LRR type disease resistance protein [Glycine max] gi|223452578|gb|ACM89616.1| TIR-NBS-LRR type disease resistance protein [Glycine max]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/142 (52%), Positives = 98/142 (69%), Gaps = 11/142 (7%)

Query: 111 HAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEA 166
           H  F S+ G       EDTR  FTSHLY+AL++  ++T+I+    RGDEIS SL+ AI+ 
Sbjct: 19  HDVFLSFRG-------EDTRYTFTSHLYAALTRLQVKTYIDNELERGDEISPSLLRAIDD 71

Query: 167 SAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFL 226
           + +++I+FSE YASSRW  D+LVKI++CKR  GQI++PVFY VDP  V+  TGSYG +F 
Sbjct: 72  AKVAVIVFSENYASSRWCLDELVKIMECKRKNGQIIVPVFYHVDPTHVRHQTGSYGHAFA 131

Query: 227 KLEERFKENSEKLQTWRNALKE 248
             E+RF  N  K+QTWR  L E
Sbjct: 132 MHEQRFVGNMNKVQTWRLVLGE 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486483|ref|XP_003613529.1| TMV resistance protein N [Medicago truncatula] gi|355514864|gb|AES96487.1| TMV resistance protein N [Medicago truncatula] gi|388497304|gb|AFK36718.1| unknown [Medicago truncatula] gi|388511843|gb|AFK43983.1| unknown [Medicago truncatula]

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/144 (47%), Positives = 102/144 (70%), Gaps = 11/144 (7%)

Query: 109 HSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAI 164
             H  F S+ G       EDTR  FTSHL++ L++  + T+I+    RGDEIS +L+ AI
Sbjct: 12  QKHEVFLSFRG-------EDTRYTFTSHLHATLTRLDVGTYIDYHLQRGDEISSALLRAI 64

Query: 165 EASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDS 224
           E +++S+++FS+ Y +S+W  D+LVKIL+CK++ GQIVLP+FY ++P+ V+  TGSY D+
Sbjct: 65  EEASLSVVVFSKNYGNSKWCLDELVKILECKKMRGQIVLPIFYDIEPSDVRNQTGSYADA 124

Query: 225 FLKLEERFKENSEKLQTWRNALKE 248
           F+K EERF  N E++Q WR AL+E
Sbjct: 125 FVKHEERFHGNLERVQKWREALRE 148

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561496|ref|XP_002521758.1| TMV resistance protein N, putative [Ricinus communis] gi|223538971|gb|EEF40568.1| TMV resistance protein N, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 93/126 (73%), Gaps = 4/126 (3%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           EDTRDNFTSHLYSAL++K I TF    I RG+EIS S+  AI+ S +S+IIFSE YA S+
Sbjct: 20  EDTRDNFTSHLYSALNKKKIFTFMDKEIKRGEEISPSIAKAIKGSKLSVIIFSEKYAFSK 79

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+L KIL+CK++ GQIV+PVFY VDP  V+   GS+  +F K EE  KE  EK+++W
Sbjct: 80  WCLDELTKILECKKMNGQIVIPVFYRVDPVHVRNQRGSFACAFAKHEETLKERMEKVESW 139

Query: 243 RNALKE 248
           R+AL E
Sbjct: 140 RSALNE 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223452607|gb|ACM89630.1| resistance protein [Glycine max]

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/287 (35%), Positives = 152/287 (52%), Gaps = 62/287 (21%)

Query: 127 EDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASS 181
           +DTR  FT +L+++L ++ I+ +     + RG  IS  L++AIE S  +LII S  YASS
Sbjct: 24  DDTRKGFTHNLFASLERRGIKAYRDDHDLERGKVISVELIEAIEESMFALIILSSNYASS 83

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
            W  D+L KIL+CK+     V P+F GVDP+ V+   GS+  +F   EE+F+E  +K++T
Sbjct: 84  TWCLDELQKILECKKE----VFPIFLGVDPSDVRHQRGSFAKAFRDHEEKFREEKKKVET 139

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQ------------------------------HLNT 271
           WR+AL+E + S     +K  NP F Q                              +L +
Sbjct: 140 WRHALRE-VASYSGWDSKDKNPYFGQIFKFLLEKLKCIDLSFSKNLKQSPDFDAAPNLES 198

Query: 272 LVV---------------------LNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           LV+                     +NL DCK LK+LP+ + +  LK L+LSGCS+ K LP
Sbjct: 199 LVLEGCTSLTEVHPSLVRHKKLAMMNLEDCKRLKTLPSNMEMSSLKYLNLSGCSEFKYLP 258

Query: 311 DIS-SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
           +   S   +  + L  T I +LPSS+ CL  L HL+L++CK+L  LP
Sbjct: 259 EFGESMEQLSLLILKETPITKLPSSLGCLVGLAHLNLKNCKNLVCLP 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477815|ref|XP_004155131.1| PREDICTED: putative disease resistance protein At4g11170-like [Cucumis sativus]

 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/138 (52%), Positives = 96/138 (69%), Gaps = 10/138 (7%)

Query: 113 HFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASA 168
           HFD +     +   EDTR NFTSHL  AL Q+ I  FI+    RG+EIS SL++AIE S 
Sbjct: 16  HFDVF----LSFRGEDTRSNFTSHLNMALRQRGINVFIDNKLSRGEEISASLLEAIEGSK 71

Query: 169 ISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKL 228
           IS++I SE YASSRW  ++LVKI+ C ++ GQ+VLP+FY VDP+ V+  +G +G+ F KL
Sbjct: 72  ISIVIISENYASSRWCLNELVKIIMCNKLRGQVVLPIFYKVDPSEVRKQSGKFGEEFAKL 131

Query: 229 EERFKENSEKLQTWRNAL 246
           E RF  +SEK+Q WR A+
Sbjct: 132 EVRF--SSEKMQAWREAM 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780473|emb|CAN66817.1| hypothetical protein VITISV_034310 [Vitis vinifera]

 Score =  144 bits (363), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/204 (43%), Positives = 120/204 (58%), Gaps = 11/204 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASS 181
           EDTR+NFT+HLY  L  K I TFI+     RG  IS +LV AIE S  S+I+ SE YASS
Sbjct: 119 EDTRNNFTAHLYKELRTKGINTFIDDDKLDRGQVISPALVAAIENSMFSIIVLSENYASS 178

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           RW  ++LVKIL+CK   GQ VLP+FY VDP+ V+   G +G++  K EE FKEN  ++Q 
Sbjct: 179 RWCLEELVKILECKESRGQRVLPIFYNVDPSDVRKHMGKFGEALAKHEENFKENMGRVQI 238

Query: 242 WRNALKEKIISACNIFT-KTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GIHLEFLKELD 299
           WR+AL +      N+    + N +    +  +V   L D   + S  A  + LE LK ++
Sbjct: 239 WRDALTQ----VANLSGWDSRNKNEVMLIEEIVSGILNDIIHIPSSDAEDLVLEKLKFMN 294

Query: 300 LSGCSKLKRLPDISSAANIEEMFL 323
           LS    L+  PD S   N+E++ L
Sbjct: 295 LSHSRYLQETPDFSGVINLEQLVL 318

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486467|ref|XP_003613521.1| TMV resistance protein N [Medicago truncatula] gi|355514856|gb|AES96479.1| TMV resistance protein N [Medicago truncatula]

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/148 (46%), Positives = 105/148 (70%), Gaps = 8/148 (5%)

Query: 113 HFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASA 168
           H   +  V  +   EDTR  FTSHL++ L++  + T+I+    RGDEIS +L+ AIE + 
Sbjct: 10  HHQKHGQVFLSFRGEDTRYTFTSHLHATLTRLKVGTYIDYNLQRGDEISSTLLMAIEEAK 69

Query: 169 ISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKL 228
           +S++IFS+ Y +S+W  D+LVKIL+CK++ GQI+LP+FY +DP+ V+  TGSY ++F+K 
Sbjct: 70  VSIVIFSKNYGNSKWCLDELVKILECKKMKGQILLPIFYDIDPSHVRNQTGSYAEAFVKH 129

Query: 229 EERFKENSEKLQTWRNALKEKIISACNI 256
           E++F+   EK+QTWR+AL+E    A NI
Sbjct: 130 EKQFQGKLEKVQTWRHALRE----AANI 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123354|ref|XP_002319058.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222857434|gb|EEE94981.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 95/141 (67%), Gaps = 9/141 (6%)

Query: 113 HFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEAS 167
           H+D +     +   EDTR NFT HLY+AL    I TF     + +G+EIS  L+ AI+ S
Sbjct: 9   HYDVF----LSFRGEDTRKNFTDHLYTALQNAGIHTFRDDNELPKGEEISSHLLKAIKES 64

Query: 168 AISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLK 227
            IS+++FS+GYASS W  D+L +IL C++  GQIVLPVFY +DP+ ++  TGS+ ++F +
Sbjct: 65  KISIVVFSKGYASSTWCLDELSEILDCRQTAGQIVLPVFYDIDPSDIRKQTGSFAEAFDR 124

Query: 228 LEERFKENSEKLQTWRNALKE 248
            EERFKE  EK+Q WR AL E
Sbjct: 125 HEERFKEEMEKVQKWRKALVE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127917|ref|XP_002329209.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870990|gb|EEF08121.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/134 (55%), Positives = 94/134 (70%), Gaps = 8/134 (5%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           +DTRDNF SHL  AL +K I+TFI+    RG+EI+ +L+  IE S IS+IIFS  YASS 
Sbjct: 22  KDTRDNFVSHLRDALCRKQIKTFIDDKLERGEEITGALLRTIEESRISVIIFSRNYASSP 81

Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+LVKIL+CK+ YGQIVLPVFY VDP+ V   TGS+G++F +LE  FK+  +K+  W
Sbjct: 82  WCVDELVKILECKKAYGQIVLPVFYHVDPSDVDQQTGSFGNAFAELERNFKQKMDKVPRW 141

Query: 243 RNALKEKIISACNI 256
           R  L     SA NI
Sbjct: 142 RADLT----SAANI 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.352	0.115	0.372	1e-33
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.317	0.109	0.439	2.3e-33
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.349	0.127	0.367	3.9e-32
TAIR|locus:2151466	1353	VICTL "VARIATION IN COMPOUND T	0.346	0.094	0.397	1.1e-31
TAIR|locus:2151506	1127	RPS6 "RESISTANT TO P. SYRINGAE	0.352	0.115	0.372	1.2e-31
TAIR|locus:2122955	1309	AT4G19500 [Arabidopsis thalian	0.344	0.097	0.410	2.4e-31
TAIR|locus:2161513	780	AT5G17970 [Arabidopsis thalian	0.346	0.164	0.392	3.3e-31
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.355	0.090	0.420	3.5e-31
TAIR|locus:2129221	1147	RPP4 "recognition of peronospo	0.349	0.112	0.419	5.9e-31
TAIR|locus:2098145	1240	AT3G44630 [Arabidopsis thalian	0.322	0.095	0.392	1.8e-30

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.0e-33, Sum P(2) = 1.0e-33
 Identities = 51/137 (37%), Positives = 82/137 (59%)

Query:   116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISL 171
             SY+  P+    ED R  F SH    L +KSI TF    + R   I+  LV+AI+ S I++
Sbjct:    12 SYDVFPS-FSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAPELVEAIKDSRIAV 70

Query:   172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
             I+FS+ YASS W  ++L++I++C +  GQ V+PVFY +DP+ ++  +G +G++F K  + 
Sbjct:    71 IVFSKNYASSSWCLNELLEIMRCNKYLGQQVIPVFYYLDPSHLRKQSGEFGEAFKKTCQN 130

Query:   232 FKENSEKLQTWRNALKE 248
               +  E    W+ AL +
Sbjct:   131 --QTEEVKNQWKQALTD 145

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
 Identities = 54/123 (43%), Positives = 76/123 (61%)

Query:   128 DTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLIIFSEGYASSRW 183
             D R  F SHL+S  + K I TF    I+RG  I   L+  I  + +S+++ S+ YASS W
Sbjct:    23 DVRKGFLSHLHSVFASKGITTFNDQKIDRGQTIGPELIQGIREARVSIVVLSKKYASSSW 82

Query:   184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
               D+LV+IL+CK   GQIV+ VFY VDP+ VK  +G +G++F K  +  K    K++ WR
Sbjct:    83 CLDELVEILKCKEALGQIVMTVFYEVDPSDVKKQSGVFGEAFEKTCQG-KNEEVKIR-WR 140

Query:   244 NAL 246
             NAL
Sbjct:   141 NAL 143

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.9e-32, Sum P(2) = 3.9e-32
 Identities = 50/136 (36%), Positives = 77/136 (56%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISLI 172
             Y+  P+    ED R  F SH    L +K I  F    I R   +   L  AI  S I+++
Sbjct:    10 YDVFPS-FSGEDVRVTFLSHFLKELDRKLISVFKDNDIQRSQSLDPELKLAIRDSRIAIV 68

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             +FS+ YA+S W  D+L++I++CK  +GQIV+PVFYG+DP  V+  +G +G  F    +  
Sbjct:    69 VFSKNYAASSWCLDELLEIVKCKEEFGQIVIPVFYGLDPCHVRKQSGEFGIVFENTCQT- 127

Query:   233 KENSEKLQTWRNALKE 248
              +  +++Q WR AL +
Sbjct:   128 -KTDDEIQKWRRALTD 142

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151466 VICTL "VARIATION IN COMPOUND TRIGGERED ROOT growth response-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.1e-31, Sum P(3) = 1.1e-31
 Identities = 54/136 (39%), Positives = 82/136 (60%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSL----VDAIEASAISLI 172
             Y+  P+     D R NF SHL   L  KS+ +F ++  E SQSL      AI  S I+L+
Sbjct:     9 YDVFPS-FSGTDVRRNFLSHLLKGL-HKSVNSFRDQNMERSQSLDPMLKQAIRDSRIALV 66

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             +FS+ YASS W  ++L++I++CK  +GQ+V+P+FY +DP+ V+   G +G +F +   R 
Sbjct:    67 VFSKNYASSSWCLNELLEIVKCKEEFGQMVIPIFYCLDPSHVRHQDGDFGKNFEETCGRN 126

Query:   233 KENSEKLQTWRNALKE 248
              E  EK+Q W  AL +
Sbjct:   127 TEE-EKIQ-WEKALTD 140

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2151506 RPS6 "RESISTANT TO P. SYRINGAE 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
 Identities = 51/137 (37%), Positives = 80/137 (58%)

Query:   116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISL 171
             SY   P+    ED R+ F SH    L +K I +F    I R   +   L   I  S I++
Sbjct:    13 SYHVFPS-FSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSRIAV 71

Query:   172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
             ++FS+ YASS W  ++L++I++CK+ +GQ+V+P+FY +DP+ V+  TG +G  F K   R
Sbjct:    72 VVFSKTYASSSWCLNELLEIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTC-R 130

Query:   232 FKENSEKLQTWRNALKE 248
              K   EK++ W+ AL +
Sbjct:   131 NKTVDEKIR-WKEALTD 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122955 AT4G19500 [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
 Identities = 55/134 (41%), Positives = 75/134 (55%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE----ISQSLVDAIEASAISLI 172
             Y+  P+     D R +F +HL   L ++ I TF + G E    I   L+ AI  S IS++
Sbjct:    11 YDVFPS-FSKVDVRRSFLAHLLKELDRRLINTFTDHGMERNLPIDAELLSAIAESRISIV 69

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             IFS+ YASS W  D+LV+I  C +   QIV+PVF+ V P+ VK  TG +G  F K  +  
Sbjct:    70 IFSKNYASSTWCLDELVEIHTCYKELAQIVVPVFFNVHPSQVKKQTGEFGKVFGKTCKGK 129

Query:   233 KENSEKLQTWRNAL 246
              EN  KL+ W  AL
Sbjct:   130 PEN-RKLR-WMQAL 141

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2161513 AT5G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 3.3e-31, Sum P(2) = 3.3e-31
 Identities = 53/135 (39%), Positives = 76/135 (56%)

Query:   116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETF----INRGDEISQSLVDAIEASAISL 171
             SY   P+    ED R NF SHL+  L    I+ F    I R   I   L  AI  S I +
Sbjct:    15 SYHVFPSFC-GEDVRRNFLSHLHKELQHNGIDAFKDGGIKRSRSIWPELKQAIWESKIFI 73

Query:   172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
             ++ S+ YA S W  D+LV+I++C+ V G+ ++P+FY VDP+ V+  TG +G +F K+ + 
Sbjct:    74 VVLSKNYAGSCWCLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDV 133

Query:   232 FKENSEKLQTWRNAL 246
               E  E+ Q WR AL
Sbjct:   134 RTE--EERQRWRQAL 146

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 3.5e-31, Sum P(2) = 3.5e-31
 Identities = 58/138 (42%), Positives = 81/138 (58%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE----ISQSLVDAIEASAISLI 172
             Y+  P+     D R  F SHL  AL  KSI TFI+ G E    I+  L+ AI  + IS++
Sbjct:    12 YDVFPS-FSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAPELISAIREARISIV 70

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE-- 230
             IFS+ YASS W  ++LV+I +C    GQ+V+PVFY VDP+ V+  TG +G  F K  E  
Sbjct:    71 IFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVS 130

Query:   231 RFKENSEKLQTWRNALKE 248
             + K+  ++ Q W  AL +
Sbjct:   131 KDKQPGDQKQRWVQALTD 148

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2129221 RPP4 "recognition of peronospora parasitica 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
 Identities = 57/136 (41%), Positives = 81/136 (59%)

Query:   117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE----ISQSLVDAIEASAISLI 172
             Y+  P+     D R  F SHL  AL ++SI TF++ G      I+ +L+ AI  + IS++
Sbjct:    13 YDVFPS-FSGVDVRKTFLSHLIEALDRRSINTFMDHGIVRSCIIADALITAIREARISIV 71

Query:   173 IFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERF 232
             IFSE YASS W  ++LV+I +C +   Q+V+PVFYGVDP+ V+   G +GD F K  E  
Sbjct:    72 IFSENYASSTWCLNELVEIHKCYKKGEQMVIPVFYGVDPSHVRKQIGGFGDVFKKTCED- 130

Query:   233 KENSEKLQTWRNALKE 248
             K   +K Q W  AL +
Sbjct:   131 KPEDQK-QRWVKALTD 145

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=ISS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2098145 AT3G44630 [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 49/125 (39%), Positives = 79/125 (63%)

Query:   128 DTRDNFTSHLYSALSQKSIETFINRGDEISQS----LVDAIEASAISLIIFSEGYASSRW 183
             D R  F SH+  +  +K I+TFI+   E S+S    L +AI+ S I++++ S  YASS W
Sbjct:   104 DVRRTFLSHIMESFRRKGIDTFIDNNIERSKSIGPELKEAIKGSKIAIVLLSRKYASSSW 163

Query:   184 FFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWR 243
               D+L +I++C+++ GQIV+ +FY V+P  +K  TG +G +F K   R K   E+++ WR
Sbjct:   164 CLDELAEIMKCRQMVGQIVMTIFYEVEPTDIKKQTGEFGKAFTKTC-RGKPK-EQVERWR 221

Query:   244 NALKE 248
              AL++
Sbjct:   222 KALED 226

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	369
pfam01582	135	pfam01582, TIR, TIR domain	1e-29
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	2e-25
PLN03210	1153	PLN03210, PLN03210, Resistant to P	5e-24
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-21
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-16
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-12
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-06

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  110 bits (277), Expect = 1e-29
 Identities = 49/130 (37%), Positives = 79/130 (60%), Gaps = 7/130 (5%)

Query: 125 PSEDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYA 179
             +D RD F SHL   L +K I+  I+      G+ I ++L +AIE S  +++IFS  YA
Sbjct: 6   SGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIFSSNYA 65

Query: 180 SSRWFFDKLVKILQCKRVYG--QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSE 237
           SS W  D+LV+I++C    G  +++LP+FY VDP+ V+  +G +G +FLK  +   +  +
Sbjct: 66  SSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKED 125

Query: 238 KLQTWRNALK 247
           K++ W+ AL 
Sbjct: 126 KIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 99.3 bits (248), Expect = 2e-25
 Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 11/138 (7%)

Query: 114 FDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINR---GDEISQSLVDAIEASAIS 170
           F SY G       ED R+ F SHL   L    +  FI+    G    + + +AIE S I+
Sbjct: 5   FISYSG------KEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIA 58

Query: 171 LIIFSEGYASSRWFFDKLVKILQCKRVYGQI-VLPVFYGVDPAPVKWPTGSYGDSFLKLE 229
           +++ S  YA S W  D+LV  L+     G + V+P+FY V P+ V+   G +   F K  
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 230 ERFKENSEKLQTWRNALK 247
            ++ E  EK Q W+ AL 
Sbjct: 119 LKWPE-DEKEQFWKKALY 135

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  103 bits (258), Expect = 5e-24
 Identities = 52/135 (38%), Positives = 79/135 (58%), Gaps = 7/135 (5%)

Query: 116 SYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQS----LVDAIEASAISL 171
            Y+  P+    ED R  F SH    L +K I  F +   E SQS    L  AI  S I++
Sbjct: 12  VYDVFPS-FSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAV 70

Query: 172 IIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEER 231
           ++FS+ YASS W  ++L++I++CK   GQ+V+PVFYG+DP+ V+  TG +G++F K  + 
Sbjct: 71  VVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN 130

Query: 232 FKENSEKLQTWRNAL 246
             E+ +    W+ AL
Sbjct: 131 KTEDEKIQ--WKQAL 143

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 96.1 bits (239), Expect = 1e-21
 Identities = 42/90 (46%), Positives = 60/90 (66%), Gaps = 2/90 (2%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           PS  Q+L+ L  L + +C +L++LP GI+LE L+ LDLSGCS+L+  PDIS+  NI ++ 
Sbjct: 795 PSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST--NISDLN 852

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSL 352
           L+ T IEE+P  IE    L  LD+  C +L
Sbjct: 853 LSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 78.8 bits (194), Expect = 9e-16
 Identities = 47/108 (43%), Positives = 67/108 (62%), Gaps = 5/108 (4%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
           L+   +S C+   + P  S  Q+LN L  L++  C++L+ LP GI+L+ L  L+LSGCS+
Sbjct: 659 LETLKLSDCSSLVELP--SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSR 716

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLK 353
           LK  PDIS+  NI  + L+ TAIEE PS++  L  L  L L + KS K
Sbjct: 717 LKSFPDIST--NISWLDLDETAIEEFPSNLR-LENLDELILCEMKSEK 761

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 66.4 bits (162), Expect = 7e-12
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 3/96 (3%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIH-LEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG- 325
               LV L ++  K L+ L  G+H L  L+ +DL G   LK +PD+S A N+E + L+  
Sbjct: 609 RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667

Query: 326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFL 361
           +++ ELPSSI+ L KL  LD+  C++L+ LP+G+ L
Sbjct: 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINL 703

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 32/147 (21%)

Query: 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS------------------ 285
           N L++  +S C      P      +L +L  LNL  C  LKS                  
Sbjct: 681 NKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI 737

Query: 286 --LPAGIHLEFLKELDLSGCSKLK-------RLPDISS-AANIEEMFL-NGTAIEELPSS 334
              P+ + LE L EL L      K         P ++  + ++  +FL +  ++ ELPSS
Sbjct: 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSS 797

Query: 335 IECLYKLLHLDLEDCKSLKSLPSGLFL 361
           I+ L+KL HL++E+C +L++LP+G+ L
Sbjct: 798 IQNLHKLEHLEIENCINLETLPTGINL 824

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
PLN03194	187	putative disease resistance protein; Provisional	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.66
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.65
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.19
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.11
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.08
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.07
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.04
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.02
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
PLN03150	623	hypothetical protein; Provisional	98.9
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	98.8
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.7
PLN03150	623	hypothetical protein; Provisional	98.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.44
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.42
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.32
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.29
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.22
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.2
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.15
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.15
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.13
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.12
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.05
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.9
PRK15386	426	type III secretion protein GogB; Provisional	97.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.65
PRK15386	426	type III secretion protein GogB; Provisional	97.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.59
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.52
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.47
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.06
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.0
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.89
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.74
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	96.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.53
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.47
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.7
KOG3678	832	consensus SARM protein (with sterile alpha and arm	95.6
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.22
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	94.93
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.49
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.23
smart00370	26	LRR Leucine-rich repeats, outliers.	94.23
KOG2982	418	consensus Uncharacterized conserved protein [Funct	94.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.47
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.41
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.79
smart00370	26	LRR Leucine-rich repeats, outliers.	92.79
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.51
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	91.93
KOG0473	326	consensus Leucine-rich repeat protein [Function un	91.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	91.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	89.05
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	88.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	87.04
KOG1947	482	consensus Leucine rich repeat proteins, some prote	86.32
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	86.09
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	85.79
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	82.75
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	82.37

>PLN03194 putative disease resistance protein; Provisional

Probab=99.97  E-value=7.7e-32  Score=233.33  Aligned_cols=142  Identities=24%  Similarity=0.381  Sum_probs=119.6

Q ss_pred             cCCCCCCccccceeccccCCCCCCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcce
Q 017543           95 RTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAI  169 (369)
Q Consensus        95 ~~~~r~~~~~~~~~~~~~~~~~~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i  169 (369)
                      +.-||.-.+|+    ++.--...|||||||+|+|+|+.|++|||.+|.++||++|+     .+|+.|.+.|.+||++|++
T Consensus         8 ~~~~~~~~~~~----~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri   83 (187)
T PLN03194          8 QLNNRLFLHYP----SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKV   83 (187)
T ss_pred             HHhhhhhcccc----cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeE
Confidence            33455545554    22223345799999999999999999999999999999999     6899999999999999999


Q ss_pred             eeEEeccCCcccccccccceeeEEeeeccCeEEeeeeeccCCCCccCC-CCCccccchhhhhhhhcchhHHHHHHHhhhh
Q 017543          170 SLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWP-TGSYGDSFLKLEERFKENSEKLQTWRNALKE  248 (369)
Q Consensus       170 ~ivv~S~~y~~S~~cl~ELv~i~~~~~~~~l~vlPiFy~V~pS~Vr~q-~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~  248 (369)
                      +|+|||++|+.|.||++||++|++|.    ..|+||||+|+|++|++| .+.             ...+++++|+.||++
T Consensus        84 ~IvVfS~~Ya~S~WCLdEL~~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~  146 (187)
T PLN03194         84 GVAVFSPRYCESYFCLHELALIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEE  146 (187)
T ss_pred             EEEEECCCcccchhHHHHHHHHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHH
Confidence            99999999999999999999999873    479999999999999997 332             135789999999999


Q ss_pred             hhhhhcccc
Q 017543          249 KIISACNIF  257 (369)
Q Consensus       249 L~ll~~~~l  257 (369)
                      ++.+.+..+
T Consensus       147 va~l~G~~~  155 (187)
T PLN03194        147 AKYTVGLTF  155 (187)
T ss_pred             HhccccccC
Confidence            988776543

>PLN03210 Resistant to P

Probab=99.97  E-value=2.2e-31  Score=294.16  Aligned_cols=138  Identities=34%  Similarity=0.606  Sum_probs=129.3

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhCCcceEe----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEE
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQ  193 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~  193 (369)
                      ||||+||||+|+|+.|++|||.||.++||.+|+    .+|+.|.++|.+||++|+++|||||++|++|+|||+||++|++
T Consensus        13 ~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya~s~wcl~el~~i~~   92 (1153)
T PLN03210         13 YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVR   92 (1153)
T ss_pred             CcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCcccchHHHHHHHHHHH
Confidence            499999999999999999999999999999999    8999999999999999999999999999999999999999999


Q ss_pred             eeeccCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccc
Q 017543          194 CKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIF  257 (369)
Q Consensus       194 ~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l  257 (369)
                      |.++.++.|+||||+|+|++|++|+|.||++|.+++...  ..+++++|+.||++++...+...
T Consensus        93 ~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~  154 (1153)
T PLN03210         93 CKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHS  154 (1153)
T ss_pred             hhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceec
Confidence            999999999999999999999999999999999877643  46789999999999887765443

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.66  E-value=3.7e-18  Score=182.30  Aligned_cols=272  Identities=22%  Similarity=0.285  Sum_probs=184.0

Q ss_pred             HHHHhHhhhhhhc-------cCCCCCCC-CCCchhHHHHhhhcCCCcccccccCCCCCCCcCCCCCCCCCCcccCCCCCC
Q 017543           22 EEELRWMSQEVRE-------SSPRTSAA-SGDDWRSAFDAAANGPVSLRSYSRSASNGHSRRYSDPAENGDVRSGSNSGS   93 (369)
Q Consensus        22 ~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (369)
                      ++=-|-|++.++|       .|+.|++. +-.+|+.+........+...     +                   +.   -
T Consensus       342 ~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~-----~-------------------~~---~  394 (889)
T KOG4658|consen  342 EELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF-----S-------------------GM---E  394 (889)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC-----C-------------------ch---h
Confidence            4455778888888       77888888 55699999987665532210     0                   00   1


Q ss_pred             ccCCCCCCccccceeccccCCCCCCCeeecCCCccccCchHHHHHHHH--------hhCCcceEe---------------
Q 017543           94 RRTPNREGYRYGYILHSHAHFDSYEGVPTAIPSEDTRDNFTSHLYSAL--------SQKSIETFI---------------  150 (369)
Q Consensus        94 ~~~~~r~~~~~~~~~~~~~~~~~~~dvFis~~~~d~r~~F~~~L~~aL--------~~~gi~~~~---------------  150 (369)
                      .....-.+|+|+.                 .. ++.|.||   |||||        .++.|.+|+               
T Consensus       395 ~~i~~iLklSyd~-----------------L~-~~lK~CF---LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~  453 (889)
T KOG4658|consen  395 ESILPILKLSYDN-----------------LP-EELKSCF---LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAE  453 (889)
T ss_pred             hhhHHhhhccHhh-----------------hh-HHHHHHH---HhhccCCcccccchHHHHHHHHhccCcCccccccchh
Confidence            2333446677763                 33 5689999   99999        444556666               


Q ss_pred             ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEEeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhh
Q 017543          151 NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE  230 (369)
Q Consensus       151 ~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~  230 (369)
                      ..|+++.++|..+.   .+....   ++ .    --+-++|||.++++.+++        .++...+...+.  ... ..
T Consensus       454 d~G~~~i~~LV~~~---Ll~~~~---~~-~----~~~~~kmHDvvRe~al~i--------as~~~~~~e~~i--v~~-~~  511 (889)
T KOG4658|consen  454 DVGYDYIEELVRAS---LLIEER---DE-G----RKETVKMHDVVREMALWI--------ASDFGKQEENQI--VSD-GV  511 (889)
T ss_pred             cchHHHHHHHHHHH---HHhhcc---cc-c----ceeEEEeeHHHHHHHHHH--------hccccccccceE--EEC-Cc
Confidence            35566666665553   111111   11 0    124469999999999988        555554443311  111 11


Q ss_pred             hhhcchhHHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCC-CCCcCccc--cccCccEEEccCCCCCC
Q 017543          231 RFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKS-LKSLPAGI--HLEFLKELDLSGCSKLK  307 (369)
Q Consensus       231 ~~~~~~~~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~-l~~lP~~i--~L~~L~~L~Ls~~~~l~  307 (369)
                      .. .+.+++..|. +.+.+.. .++.+..++..   ...++|++|-+.+|.. +..++..+  .++.|++|||++|..+.
T Consensus       512 ~~-~~~~~~~~~~-~~rr~s~-~~~~~~~~~~~---~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~  585 (889)
T KOG4658|consen  512 GL-SEIPQVKSWN-SVRRMSL-MNNKIEHIAGS---SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS  585 (889)
T ss_pred             Cc-cccccccchh-heeEEEE-eccchhhccCC---CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC
Confidence            11 1255677774 3333333 33445555443   3455799999999842 67777765  79999999999999999


Q ss_pred             cCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCCC
Q 017543          308 RLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRIR  369 (369)
Q Consensus       308 ~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~  369 (369)
                      .+|+ |+.|.+|++|+|+++.|..||.++++|++|.+|++..+..+..+|..+..|++|+.|+
T Consensus       586 ~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  586 KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             cCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            9998 9999999999999999999999999999999999999887777766666688888763

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.65  E-value=3.6e-18  Score=145.12  Aligned_cols=127  Identities=26%  Similarity=0.446  Sum_probs=104.9

Q ss_pred             eeecCCCccccCchHHHHHHHHhhC--CcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543          120 VPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL  192 (369)
Q Consensus       120 vFis~~~~d~r~~F~~~L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~  192 (369)
                      |||||++.+.+..|+.+|..+|.++  |+++|+     ..|..+.+++.++|++|++.|+|||++|+.|.||+.|+..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999666889999999999999  999999     689999999999999999999999999999999999999999


Q ss_pred             EeeeccC--eEEeeeeeccCCCCcc-CCCCCccccchhhhhhhhcc--hhHHHHHHHhh
Q 017543          193 QCKRVYG--QIVLPVFYGVDPAPVK-WPTGSYGDSFLKLEERFKEN--SEKLQTWRNAL  246 (369)
Q Consensus       193 ~~~~~~~--l~vlPiFy~V~pS~Vr-~q~g~fg~af~~~e~~~~~~--~~~l~~W~~aL  246 (369)
                      ++....+  ..|+|+||++.+.++. .+.+.|+..+.........+  ......|+..+
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~  139 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLR  139 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHh
Confidence            9877655  7999999999999999 67777776665555433322  45667787543

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.53  E-value=5e-15  Score=125.09  Aligned_cols=131  Identities=31%  Similarity=0.495  Sum_probs=103.9

Q ss_pred             CCCeeecCCC-ccccCchHHHHHHHHhhCCcceEe---ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543          117 YEGVPTAIPS-EDTRDNFTSHLYSALSQKSIETFI---NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL  192 (369)
Q Consensus       117 ~~dvFis~~~-~d~r~~F~~~L~~aL~~~gi~~~~---~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~  192 (369)
                      +|||||||++ +++...|+.+|..+|...|+.+|.   ..|.....++.++|++|++.|+++|++|..|.||..|+..+.
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a~   80 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL   80 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHHH
Confidence            3699999999 677789999999999999999999   344444448999999999999999999999999999998877


Q ss_pred             Eeeec-cCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhh
Q 017543          193 QCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKE  248 (369)
Q Consensus       193 ~~~~~-~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~  248 (369)
                      ..... ....++||+++..|..+..+.+.+...+......+..+..+ ..|...+..
T Consensus        81 ~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~  136 (140)
T smart00255       81 ENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYA  136 (140)
T ss_pred             HHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHH
Confidence            65433 45799999999988888888888887766553344333332 567765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.19  E-value=1.8e-12  Score=111.16  Aligned_cols=112  Identities=26%  Similarity=0.327  Sum_probs=66.7

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC-cCCC-CCCCCCCCEEEeecCCCc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~-~lP~-i~~L~~L~~L~Ls~n~l~  329 (369)
                      ..+.++++|..  +..+++|+.|++.-| .+..+|.++ .++.|++|||+.|+.-+ .+|. +--|+.|+.|.|+.|.++
T Consensus        64 ~nnqie~lp~~--issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe  140 (264)
T KOG0617|consen   64 SNNQIEELPTS--ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE  140 (264)
T ss_pred             ccchhhhcChh--hhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence            34556666654  667777777777777 467777777 77777777777644321 2343 333444444444445555


Q ss_pred             ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      -||..+|+|++|+.|.+.+|. +-++|.+++.|+.|+.|
T Consensus       141 ~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrel  178 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLREL  178 (264)
T ss_pred             cCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHH
Confidence            556666666666666666665 44566666665555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.11  E-value=5.8e-11  Score=130.35  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=82.0

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEe
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~L  323 (369)
                      |+.+.+..+.....+|..  +.++++|++|+|++|...+.+|..+ ++++|+.|+|++|...+.+|. ++++++|++|+|
T Consensus       166 L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNS--LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             CCEEECccCcccccCChh--hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence            333444343333344433  5667777777777775455667777 777777777777665566775 777777777777


Q ss_pred             ecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          324 NGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       324 s~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++|.+. .+|..+++|++|++|+|++|++.+.+|..+..+++|+.|
T Consensus       244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            777765 677777777777777777777667777777777777654

>PLN03210 Resistant to P

Probab=99.08  E-value=2e-10  Score=128.12  Aligned_cols=119  Identities=35%  Similarity=0.608  Sum_probs=101.5

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeec
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG  325 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~  325 (369)
                      |+.+.+..|..+..+|..  ++++++|+.|++++|..++.+|..+.+++|+.|+|++|+.+..+|.+  .++|+.|+|++
T Consensus       780 L~~L~Ls~n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~  855 (1153)
T PLN03210        780 LTRLFLSDIPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSR  855 (1153)
T ss_pred             chheeCCCCCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc--ccccCEeECCC
Confidence            444445555556667654  77899999999999988999998888999999999999999988874  36899999999


Q ss_pred             CCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       326 n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |.|+++|.+++++++|+.|+|++|+.+..+|..+..|++|+.|
T Consensus       856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L  898 (1153)
T PLN03210        856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV  898 (1153)
T ss_pred             CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence            9999999999999999999999999999999988888777654

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.07  E-value=7.7e-12  Score=107.36  Aligned_cols=107  Identities=24%  Similarity=0.327  Sum_probs=94.6

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCC-CCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l-~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~  329 (369)
                      +.+.+..+|..  ++.++.|++|+|.+|+.- ..+|..+ .++.|+.|.|++ +.++-+|. +|+|++|+.|.+..|.+-
T Consensus        87 gmnrl~~lprg--fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   87 GMNRLNILPRG--FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             chhhhhcCccc--cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccCchh
Confidence            34566667766  899999999999998432 3699988 999999999999 77888996 999999999999999999


Q ss_pred             ccCccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543          330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR  363 (369)
Q Consensus       330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~  363 (369)
                      +||.+||.|..|+.|.+.+|. +..+|.+++.+.
T Consensus       164 ~lpkeig~lt~lrelhiqgnr-l~vlppel~~l~  196 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNR-LTVLPPELANLD  196 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccce-eeecChhhhhhh
Confidence            999999999999999999998 899999998764

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.04  E-value=1.5e-10  Score=127.13  Aligned_cols=122  Identities=22%  Similarity=0.290  Sum_probs=102.9

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~  322 (369)
                      .|+.+....+.....+|..  ++.+++|+.|+|++|...+.+|..+ ++++|++|+|++|...+.+|. ++++++|++|+
T Consensus       189 ~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  266 (968)
T PLN00113        189 SLEFLTLASNQLVGQIPRE--LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF  266 (968)
T ss_pred             CCCeeeccCCCCcCcCChH--HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence            3444555555544455543  7789999999999996556889888 999999999999877778887 99999999999


Q ss_pred             eecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|.+. .+|.+++++++|++|+|++|++.+.+|..+..+++|+.|
T Consensus       267 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L  313 (968)
T PLN00113        267 LYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL  313 (968)
T ss_pred             CcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence            9999887 789999999999999999999888999999999888876

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.02  E-value=1.4e-11  Score=123.34  Aligned_cols=82  Identities=24%  Similarity=0.406  Sum_probs=64.6

Q ss_pred             CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCC
Q 017543          285 SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLC  362 (369)
Q Consensus       285 ~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L  362 (369)
                      .+|.++ .|.+|+.+|||. |.+..+|+ +-++.+|+.|+||+|+|++|-..++...+|++|+|+.|+ +..||+.+.+|
T Consensus       213 N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL  290 (1255)
T KOG0444|consen  213 NIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKL  290 (1255)
T ss_pred             cCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchHHHhhh
Confidence            356666 667777777775 66777887 778888888888888888888888888888888888888 78888888888


Q ss_pred             CCCCCC
Q 017543          363 RNKCRI  368 (369)
Q Consensus       363 ~~L~~L  368 (369)
                      ++|++|
T Consensus       291 ~kL~kL  296 (1255)
T KOG0444|consen  291 TKLTKL  296 (1255)
T ss_pred             HHHHHH
Confidence            877765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.97  E-value=2.2e-10  Score=109.71  Aligned_cols=98  Identities=21%  Similarity=0.362  Sum_probs=60.3

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      +.+..+|.+  .+.+..|+.|+++.| .+..+|..+ .+..|+.+-.++ +.++.+|+  +++|.+|..|||.+|.|..+
T Consensus       445 N~Ln~LP~e--~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~-nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I  520 (565)
T KOG0472|consen  445 NLLNDLPEE--MGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASN-NQIGSVDPSGLKNMRNLTTLDLQNNDLQQI  520 (565)
T ss_pred             chhhhcchh--hhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhcc-ccccccChHHhhhhhhcceeccCCCchhhC
Confidence            344444443  344444555555555 355555554 333333333333 56677774  77788888888888888888


Q ss_pred             CccccCCCCCcEEecccCCCCCcCCcc
Q 017543          332 PSSIECLYKLLHLDLEDCKSLKSLPSG  358 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~  358 (369)
                      |+.+|++++|++|+|.||++ . .|..
T Consensus       521 Pp~LgnmtnL~hLeL~gNpf-r-~Pr~  545 (565)
T KOG0472|consen  521 PPILGNMTNLRHLELDGNPF-R-QPRH  545 (565)
T ss_pred             ChhhccccceeEEEecCCcc-C-CCHH
Confidence            88888888888888888773 3 5543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.97  E-value=2.2e-11  Score=121.87  Aligned_cols=111  Identities=26%  Similarity=0.390  Sum_probs=65.3

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-  329 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-  329 (369)
                      +|+.+...|+.  +-++.+|+.|+|++| .++.+-..+ ...+|..|+||. |.++.+|+ +++|+.|+.|.+.+|++. 
T Consensus       230 S~N~Lp~vPec--ly~l~~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  230 SENNLPIVPEC--LYKLRNLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             cccCCCcchHH--HhhhhhhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccc
Confidence            34444444443  344555566666665 355555555 455555566665 45566665 666666666666666543 


Q ss_pred             -ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          330 -ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 -~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                       -||++||+|.+|+.+...+|+ +.-+|.++.++.+|++|
T Consensus       306 eGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             cCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHh
Confidence             566666666666666666655 66666666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=1.2e-10  Score=111.65  Aligned_cols=124  Identities=25%  Similarity=0.331  Sum_probs=91.6

Q ss_pred             hhHHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--C
Q 017543          236 SEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--I  312 (369)
Q Consensus       236 ~~~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i  312 (369)
                      .+....|+ .++++... .+.++.+|..  ++.+..|..|+|+.| .+..+| +| .+..|+.|.++. |.++.+|.  .
T Consensus       176 ~~~~i~m~-~L~~ld~~-~N~L~tlP~~--lg~l~~L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~-N~i~~lpae~~  248 (565)
T KOG0472|consen  176 PENHIAMK-RLKHLDCN-SNLLETLPPE--LGGLESLELLYLRRN-KIRFLP-EFPGCSLLKELHVGE-NQIEMLPAEHL  248 (565)
T ss_pred             CHHHHHHH-HHHhcccc-hhhhhcCChh--hcchhhhHHHHhhhc-ccccCC-CCCccHHHHHHHhcc-cHHHhhHHHHh
Confidence            33344454 34433332 2567777766  788888888888888 588888 56 788888888886 77888885  4


Q ss_pred             CCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       313 ~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+|.+|..|||..|+++++|.++..|.+|..||+++|. +..+|.++++| .|+.|
T Consensus       249 ~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  249 KHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             cccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeeh
Confidence            47888888888888888888888888888888888777 78888888877 65544

>PLN03150 hypothetical protein; Provisional

Probab=98.90  E-value=2.1e-09  Score=112.57  Aligned_cols=92  Identities=24%  Similarity=0.275  Sum_probs=83.3

Q ss_pred             eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecc
Q 017543          271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLE  347 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls  347 (369)
                      .++.|+|++|...+.+|..+ .|++|+.|+|++|...+.+|. ++.|++|+.|+|++|.+. .+|..+++|++|++|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999996567899999 999999999999777779997 999999999999999998 899999999999999999


Q ss_pred             cCCCCCcCCccccCC
Q 017543          348 DCKSLKSLPSGLFLC  362 (369)
Q Consensus       348 ~n~~l~~lP~~i~~L  362 (369)
                      +|++.+.+|..+..+
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            999999999987653

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=98.80  E-value=5.3e-10  Score=89.24  Aligned_cols=82  Identities=27%  Similarity=0.413  Sum_probs=68.3

Q ss_pred             eeecCCCccccCchHHHHHHHHhhCCcceEe----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeEEee
Q 017543          120 VPTAIPSEDTRDNFTSHLYSALSQKSIETFI----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCK  195 (369)
Q Consensus       120 vFis~~~~d~r~~F~~~L~~aL~~~gi~~~~----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~~~~  195 (369)
                      |||||+++|  ..++..|...|...|+.+|+    ..|+.+.+.+.++|++|+..|+++|++|..|.||..|+....   
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~---   75 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAW---   75 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHH---
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHH---
Confidence            899999999  45999999999999999999    678888889999999999999999999999999999987663   


Q ss_pred             eccCeEEeeeee
Q 017543          196 RVYGQIVLPVFY  207 (369)
Q Consensus       196 ~~~~l~vlPiFy  207 (369)
                       ..+..++|+..
T Consensus        76 -~~~~~iipv~~   86 (102)
T PF13676_consen   76 -KRGKPIIPVRL   86 (102)
T ss_dssp             -CTSESEEEEEC
T ss_pred             -HCCCEEEEEEE
Confidence             25557888874

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.70  E-value=1e-08  Score=89.94  Aligned_cols=97  Identities=25%  Similarity=0.397  Sum_probs=44.1

Q ss_pred             ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-C-CCCCCCCEEEeecCCCcccCc--cccCCCCCc
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMFLNGTAIEELPS--SIECLYKLL  342 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i-~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~  342 (369)
                      .+.+|+.|+|++| .+..++. + .|+.|+.|++++ |.+..+++ + ..+++|+.|+|++|+|..+-.  .+..+++|+
T Consensus        40 ~l~~L~~L~Ls~N-~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~  116 (175)
T PF14580_consen   40 TLDKLEVLDLSNN-QITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLR  116 (175)
T ss_dssp             T-TT--EEE-TTS---S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--
T ss_pred             hhcCCCEEECCCC-CCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcc
Confidence            4678888888888 5777763 5 788888888887 67777765 4 368888888888888875543  457788888


Q ss_pred             EEecccCCCCCcCCc----cccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPS----GLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~----~i~~L~~L~~L  368 (369)
                      +|+|.+|+ +..-+.    -|..+|+|+.|
T Consensus       117 ~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~L  145 (175)
T PF14580_consen  117 VLSLEGNP-VCEKKNYRLFVIYKLPSLKVL  145 (175)
T ss_dssp             EEE-TT-G-GGGSTTHHHHHHHH-TT-SEE
T ss_pred             eeeccCCc-ccchhhHHHHHHHHcChhhee
Confidence            88888888 444442    24556666554

>PLN03150 hypothetical protein; Provisional

Probab=98.66  E-value=2.3e-08  Score=104.74  Aligned_cols=92  Identities=21%  Similarity=0.342  Sum_probs=81.3

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCC-CCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECL-YKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L-~~L  341 (369)
                      +..+++|+.|+|++|...+.+|..+ .+++|+.|+|++|...+.+|+ +++|++|+.|+|++|.+. .+|..++.+ .++
T Consensus       438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~  517 (623)
T PLN03150        438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHR  517 (623)
T ss_pred             HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccC
Confidence            6678999999999996556899989 999999999999877788998 999999999999999998 999999764 578


Q ss_pred             cEEecccCCCCCcCCc
Q 017543          342 LHLDLEDCKSLKSLPS  357 (369)
Q Consensus       342 ~~L~Ls~n~~l~~lP~  357 (369)
                      ..+++.+|..++.+|.
T Consensus       518 ~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        518 ASFNFTDNAGLCGIPG  533 (623)
T ss_pred             ceEEecCCccccCCCC
Confidence            8999999987777664

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.60  E-value=6e-09  Score=96.76  Aligned_cols=122  Identities=26%  Similarity=0.333  Sum_probs=72.6

Q ss_pred             HHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCC
Q 017543          238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSA  315 (369)
Q Consensus       238 ~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L  315 (369)
                      .+..|. +|+++.+.. +.+..+.+.  ..-++.++.|+++.| .+..+.. + .|.+|+.||||+ |.+..+-. -.+|
T Consensus       279 ~~dTWq-~LtelDLS~-N~I~~iDES--vKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KL  351 (490)
T KOG1259|consen  279 SADTWQ-ELTELDLSG-NLITQIDES--VKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKL  351 (490)
T ss_pred             ecchHh-hhhhccccc-cchhhhhhh--hhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhh
Confidence            355676 566665543 555555443  445677888888887 4666555 4 777888888887 55555544 2345


Q ss_pred             CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCC--ccccCCCCCCCC
Q 017543          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~~L  368 (369)
                      -|++.|.|++|.|+.| .++++|.+|..||+++|+ +..+-  .+|++|+.|.+|
T Consensus       352 GNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  352 GNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             cCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHH
Confidence            5666666666666655 346666666666666665 33333  245555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.58  E-value=4.4e-08  Score=70.60  Aligned_cols=57  Identities=32%  Similarity=0.481  Sum_probs=45.9

Q ss_pred             cCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecccCC
Q 017543          293 EFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCK  350 (369)
Q Consensus       293 ~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~  350 (369)
                      ++|++|++++ +.+..+|.  +..+++|++|+|++|.|+.+|. .+..|++|++|++++|+
T Consensus         1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETS-STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4678888887 46778884  7888888888888888888865 46888888888888886

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.54  E-value=3.6e-09  Score=105.40  Aligned_cols=106  Identities=28%  Similarity=0.386  Sum_probs=93.7

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCccc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      ..+.+..+|.+  ++++..|+.|+|+.| .+..+|..+-.--|++|.+++ |+++.+|+ |+.+..|..||.+.|.|.++
T Consensus       106 y~n~~r~ip~~--i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~sl  181 (722)
T KOG0532|consen  106 YHNCIRTIPEA--ICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSL  181 (722)
T ss_pred             Hhccceecchh--hhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhc
Confidence            34556677766  789999999999999 699999999444499999997 88999997 99999999999999999999


Q ss_pred             CccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543          332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR  363 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~  363 (369)
                      |..++.|.+|+.|.+..|+ +..+|.++..|+
T Consensus       182 psql~~l~slr~l~vrRn~-l~~lp~El~~Lp  212 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNH-LEDLPEELCSLP  212 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhh-hhhCCHHHhCCc
Confidence            9999999999999999999 888999988765

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.47  E-value=6.8e-08  Score=84.80  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=32.5

Q ss_pred             cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccc-cCCCCCcEE
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL  344 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L  344 (369)
                      .+...++.|+|.+| .+..+..-- .+.+|+.|+|++ |.+..++.+..|++|+.|++++|.|++++..+ ..+++|++|
T Consensus        16 ~n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~Ls~-N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGN-QISTIENLGATLDKLEVLDLSN-NQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TT-S--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             cccccccccccccc-ccccccchhhhhcCCCEEECCC-CCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            44556788888888 577665332 578888999998 67888887888888999999999988887666 468889999


Q ss_pred             ecccCCCCCcCC--ccccCCCCCCC
Q 017543          345 DLEDCKSLKSLP--SGLFLCRNKCR  367 (369)
Q Consensus       345 ~Ls~n~~l~~lP--~~i~~L~~L~~  367 (369)
                      ++++|+ +..+-  ..+..+++|+.
T Consensus        94 ~L~~N~-I~~l~~l~~L~~l~~L~~  117 (175)
T PF14580_consen   94 YLSNNK-ISDLNELEPLSSLPKLRV  117 (175)
T ss_dssp             E-TTS----SCCCCGGGGG-TT--E
T ss_pred             ECcCCc-CCChHHhHHHHcCCCcce
Confidence            998887 44442  23344455543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.44  E-value=6.8e-08  Score=104.13  Aligned_cols=85  Identities=32%  Similarity=0.429  Sum_probs=74.9

Q ss_pred             CCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCC-CcccCccccCCCC
Q 017543          264 SFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTA-IEELPSSIECLYK  340 (369)
Q Consensus       264 ~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~-l~~LP~~i~~L~~  340 (369)
                      .|+..++.|++|||++|..++.+|..| +|.+||+|+|++ +.+..+|. +++|..|.+||+..+. +..+|..+..|.+
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence            346679999999999999999999999 899999999999 88999998 9999999999999984 5566665667999


Q ss_pred             CcEEecccC
Q 017543          341 LLHLDLEDC  349 (369)
Q Consensus       341 L~~L~Ls~n  349 (369)
                      |++|.+...
T Consensus       644 Lr~L~l~~s  652 (889)
T KOG4658|consen  644 LRVLRLPRS  652 (889)
T ss_pred             ccEEEeecc
Confidence            999998754

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.42  E-value=2.1e-08  Score=100.00  Aligned_cols=103  Identities=26%  Similarity=0.391  Sum_probs=70.0

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~  330 (369)
                      ..+.++.+|++  ++.+..|..|+.+.| .+..+|..+ .|.+|+.|++.. |.+..+|+ ++.|+ |..||+|+|+|..
T Consensus       151 sNNkl~~lp~~--ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis~  225 (722)
T KOG0532|consen  151 SNNKLTSLPEE--IGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCNKISY  225 (722)
T ss_pred             ecCccccCCcc--cccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccCceee
Confidence            34455555555  555666666666666 466666666 666777777776 44556664 66554 7778888888888


Q ss_pred             cCccccCCCCCcEEecccCCCCCcCCccccC
Q 017543          331 LPSSIECLYKLLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       331 LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      ||-.|.+|+.|++|-|.+|. +.+-|..|.-
T Consensus       226 iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~  255 (722)
T KOG0532|consen  226 LPVDFRKMRHLQVLQLENNP-LQSPPAQICE  255 (722)
T ss_pred             cchhhhhhhhheeeeeccCC-CCCChHHHHh
Confidence            88888888888888888777 7777776653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.41  E-value=2.2e-07  Score=66.94  Aligned_cols=57  Identities=28%  Similarity=0.445  Sum_probs=50.8

Q ss_pred             ceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI  328 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l  328 (369)
                      ++|+.|++++| .+..+|...  .+++|++|++++ +.+..+|.  +..|++|++|++++|+|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999 699999766  899999999997 67888885  89999999999999975

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.41  E-value=3.8e-08  Score=102.95  Aligned_cols=106  Identities=26%  Similarity=0.389  Sum_probs=90.2

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      +.+-..|- .|....-+|..|++++| .+..+|..+ .+.+|+.|+++. |.+..+|. ++++.+|++|+|.+|.+..+|
T Consensus        31 N~~l~~pl-~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~-n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP  107 (1081)
T KOG0618|consen   31 NSLLSRPL-EFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSR-NYIRSVPSSCSNMRNLQYLNLKNNRLQSLP  107 (1081)
T ss_pred             cccccCch-HHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccch-hhHhhCchhhhhhhcchhheeccchhhcCc
Confidence            33444442 34444556999999999 699999999 999999999997 88999997 999999999999999999999


Q ss_pred             ccccCCCCCcEEecccCCCCCcCCccccCCCC
Q 017543          333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN  364 (369)
Q Consensus       333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~  364 (369)
                      .++..+++|++|+++.|+ ++.+|.-|..++.
T Consensus       108 ~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~  138 (1081)
T KOG0618|consen  108 ASISELKNLQYLDLSFNH-FGPIPLVIEVLTA  138 (1081)
T ss_pred             hhHHhhhcccccccchhc-cCCCchhHHhhhH
Confidence            999999999999999998 8899987765543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.32  E-value=5.1e-07  Score=60.68  Aligned_cols=40  Identities=28%  Similarity=0.473  Sum_probs=29.1

Q ss_pred             CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCC
Q 017543          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP  356 (369)
Q Consensus       316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP  356 (369)
                      ++|++|+|++|+|+.+|..|++|++|++|++++|+ +..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            46788888888888888778888888888888887 54443

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.29  E-value=1.2e-07  Score=99.26  Aligned_cols=82  Identities=33%  Similarity=0.461  Sum_probs=68.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      +.++.+|++|+|++| .+.++|...  +|..|+.|+||+ |+++.||+ +.++..|++|-..+|.|..+| ++.+|+.|+
T Consensus       379 l~~~~hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~  455 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYN-RLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLK  455 (1081)
T ss_pred             hccccceeeeeeccc-ccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcce
Confidence            456788999999998 588888877  788899999998 78888887 888888888888888888888 788888888


Q ss_pred             EEecccCC
Q 017543          343 HLDLEDCK  350 (369)
Q Consensus       343 ~L~Ls~n~  350 (369)
                      .+||+.|+
T Consensus       456 ~lDlS~N~  463 (1081)
T KOG0618|consen  456 VLDLSCNN  463 (1081)
T ss_pred             EEecccch
Confidence            88888776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.22  E-value=1.5e-06  Score=92.51  Aligned_cols=103  Identities=23%  Similarity=0.386  Sum_probs=70.2

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEe
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL  323 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~L  323 (369)
                      .|+.+.... +.+..+|..  +  ..+|+.|+|++| .+..+|..+ ..+|+.|+|++ +.+..+|+ +.  .+|+.|+|
T Consensus       221 nL~~L~Ls~-N~LtsLP~~--l--~~~L~~L~Ls~N-~L~~LP~~l-~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~L  290 (754)
T PRK15370        221 NIKTLYANS-NQLTSIPAT--L--PDTIQEMELSIN-RITELPERL-PSALQSLDLFH-NKISCLPENLP--EELRYLSV  290 (754)
T ss_pred             CCCEEECCC-CccccCChh--h--hccccEEECcCC-ccCcCChhH-hCCCCEEECcC-CccCccccccC--CCCcEEEC
Confidence            344444443 445566542  2  246888888888 477777765 24688888886 56777886 54  47888888


Q ss_pred             ecCCCcccCccccCCCCCcEEecccCCCCCcCCcccc
Q 017543          324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF  360 (369)
Q Consensus       324 s~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~  360 (369)
                      ++|+|+.+|..+.  .+|++|+|++|+ +..+|..+.
T Consensus       291 s~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~l~  324 (754)
T PRK15370        291 YDNSIRTLPAHLP--SGITHLNVQSNS-LTALPETLP  324 (754)
T ss_pred             CCCccccCcccch--hhHHHHHhcCCc-cccCCcccc
Confidence            8888888887653  468888888887 566776543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.20  E-value=1.2e-06  Score=93.06  Aligned_cols=83  Identities=27%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             eeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCC
Q 017543          271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      +|+.|++++| .+..+|..  ..+|+.|++++ |.+..+|.+  ..+|+.|+|++|+|+.||.++++|.+|+.|+|++|+
T Consensus       383 ~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~-N~LssIP~l--~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        383 GLKELIVSGN-RLTSLPVL--PSELKELMVSG-NRLTSLPML--PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ccceEEecCC-cccCCCCc--ccCCCEEEccC-CcCCCCCcc--hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            4555555555 35555542  24566666666 445566652  235667777777787888888888888888888888


Q ss_pred             CCCcCCccc
Q 017543          351 SLKSLPSGL  359 (369)
Q Consensus       351 ~l~~lP~~i  359 (369)
                      +.+..|..+
T Consensus       457 Ls~~~~~~L  465 (788)
T PRK15387        457 LSERTLQAL  465 (788)
T ss_pred             CCchHHHHH
Confidence            766666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.20  E-value=1.1e-06  Score=88.35  Aligned_cols=109  Identities=27%  Similarity=0.415  Sum_probs=64.4

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.++.+|.  |.....+|+.|+|.+| .+.++-.+-  -++.|+.||||. |.+.++|.  +..-.+|++|+|++|.|+.
T Consensus       112 N~Lt~IP~--f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~  187 (873)
T KOG4194|consen  112 NELTRIPR--FGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITT  187 (873)
T ss_pred             chhhhccc--ccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccccccc
Confidence            44555553  2444455667777766 355444332  466667777776 55666663  5555667777777776666


Q ss_pred             cCc-cccCCCCCcEEecccCCCCCcCCccccC-CCCCCCC
Q 017543          331 LPS-SIECLYKLLHLDLEDCKSLKSLPSGLFL-CRNKCRI  368 (369)
Q Consensus       331 LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~-L~~L~~L  368 (369)
                      +-. .+..|.+|-.|.|++|. +..||.-+++ |++|+.|
T Consensus       188 l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  188 LETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             cccccccccchheeeecccCc-ccccCHHHhhhcchhhhh
Confidence            543 35666666666666666 6666655444 6655544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.15  E-value=3.7e-07  Score=91.60  Aligned_cols=91  Identities=27%  Similarity=0.377  Sum_probs=53.5

Q ss_pred             ccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccC
Q 017543          257 FTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       257 l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      +..+.+..|. .+.+++.|+|..| .+..+-.+.  +|+.|+.|+||. |.+..|- + |.-++.|+.|+|++|.|++||
T Consensus       257 I~kL~DG~Fy-~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N~i~~l~  333 (873)
T KOG4194|consen  257 ISKLDDGAFY-GLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSNRITRLD  333 (873)
T ss_pred             cccccCccee-eecccceeecccc-hhhhhhcccccccchhhhhccch-hhhheeecchhhhcccceeEeccccccccCC
Confidence            3344443333 4666777777777 466555555  677777777776 4455443 3 666677777777777777665


Q ss_pred             cc-ccCCCCCcEEecccCC
Q 017543          333 SS-IECLYKLLHLDLEDCK  350 (369)
Q Consensus       333 ~~-i~~L~~L~~L~Ls~n~  350 (369)
                      ++ +..|..|+.|+|++|.
T Consensus       334 ~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  334 EGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             hhHHHHHHHhhhhcccccc
Confidence            43 4444445555554444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.15  E-value=2.8e-06  Score=90.27  Aligned_cols=90  Identities=31%  Similarity=0.453  Sum_probs=54.7

Q ss_pred             eeeEEeecCCCCCCCcCccc-cc-----------------cCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC
Q 017543          271 TLVVLNLRDCKSLKSLPAGI-HL-----------------EFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i-~L-----------------~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      +|+.|+|++| .+..+|... .|                 .+|+.|+|++ |.+..+|.+  ..+|+.|+|++|.|..+|
T Consensus       343 ~Lq~LdLS~N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~-N~Lt~LP~l--~s~L~~LdLS~N~LssIP  418 (788)
T PRK15387        343 GLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSG-NRLTSLPVL--PSELKELMVSGNRLTSLP  418 (788)
T ss_pred             ccceEecCCC-ccCCCCCCCcccceehhhccccccCcccccccceEEecC-CcccCCCCc--ccCCCEEEccCCcCCCCC
Confidence            5677777776 466666422 11                 2345555554 344445542  235666666666666666


Q ss_pred             ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ..   ..+|+.|++++|+ ++.||..+.++++|..|
T Consensus       419 ~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~L  450 (788)
T PRK15387        419 ML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTV  450 (788)
T ss_pred             cc---hhhhhhhhhccCc-ccccChHHhhccCCCeE
Confidence            53   2356778888877 67888888888777654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.13  E-value=9.5e-07  Score=87.35  Aligned_cols=110  Identities=35%  Similarity=0.462  Sum_probs=75.3

Q ss_pred             cccccCCCCCCCccccc-eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcc
Q 017543          254 CNIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~-~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~  330 (369)
                      .+.+..++..  ...+. +|+.|++++| .+..+|..+ .++.|+.|++++ +.+..+|. .+.+++|+.|++++|++..
T Consensus       125 ~n~i~~i~~~--~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N~i~~  200 (394)
T COG4886         125 NNNITDIPPL--IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGNKISD  200 (394)
T ss_pred             CcccccCccc--cccchhhccccccccc-chhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCCcccc
Confidence            3445555443  33443 7778888777 577777666 778888888887 56777776 5577778888888888888


Q ss_pred             cCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          331 LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|..++.+..|+.|.+++|. ...+|..+.++.++..|
T Consensus       201 l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l  237 (394)
T COG4886         201 LPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGL  237 (394)
T ss_pred             CchhhhhhhhhhhhhhcCCc-ceecchhhhhccccccc
Confidence            88777777778888887775 45566666666555443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.12  E-value=3.7e-06  Score=89.46  Aligned_cols=101  Identities=23%  Similarity=0.395  Sum_probs=74.9

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls  324 (369)
                      +..+.+ .++.+..+|..    ...+|+.|++++| .+..+|..+ ..+|+.|+|++ +.+..+|. +.  .+|+.|+|+
T Consensus       201 L~~L~L-s~N~LtsLP~~----l~~nL~~L~Ls~N-~LtsLP~~l-~~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        201 ITTLIL-DNNELKSLPEN----LQGNIKTLYANSN-QLTSIPATL-PDTIQEMELSI-NRITELPERLP--SALQSLDLF  270 (754)
T ss_pred             CcEEEe-cCCCCCcCChh----hccCCCEEECCCC-ccccCChhh-hccccEEECcC-CccCcCChhHh--CCCCEEECc
Confidence            333433 34566777653    2357889999988 588888765 23688999998 45778886 54  579999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCCCcCCccc
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL  359 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i  359 (369)
                      +|+|..+|..+.  .+|++|+|++|+ +..+|..+
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~l  302 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNS-IRTLPAHL  302 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCc-cccCcccc
Confidence            999999998774  589999999987 67788654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.12  E-value=2.9e-07  Score=85.73  Aligned_cols=89  Identities=25%  Similarity=0.232  Sum_probs=77.2

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC--ccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP--SSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L~  342 (369)
                      +..+.+|+.|+|++| .+.++-..- +|-+++.|.|++ |.++.+..+++|.+|.+||+++|+|+.+-  .+||+|+.|+
T Consensus       325 La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~-N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE  402 (490)
T KOG1259|consen  325 LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQ-NKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLE  402 (490)
T ss_pred             hhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhh-hhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHH
Confidence            567899999999999 577766444 899999999999 88999988999999999999999999774  5799999999


Q ss_pred             EEecccCCCCCcCCc
Q 017543          343 HLDLEDCKSLKSLPS  357 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~  357 (369)
                      +|.|.+|+ +..+|+
T Consensus       403 ~l~L~~NP-l~~~vd  416 (490)
T KOG1259|consen  403 TLRLTGNP-LAGSVD  416 (490)
T ss_pred             HHhhcCCC-ccccch
Confidence            99999999 666653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.05  E-value=1.4e-06  Score=86.18  Aligned_cols=109  Identities=35%  Similarity=0.448  Sum_probs=80.7

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      +.+..+|.+  +..+++|+.|++++| .+..+|... .++.|+.|++++ +.+..+|. +..+.+|++|.+++|.+..+|
T Consensus       150 N~i~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~  225 (394)
T COG4886         150 NKIESLPSP--LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELL  225 (394)
T ss_pred             cchhhhhhh--hhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecc
Confidence            445555433  567788888888888 578888777 788888888887 67788886 566777888888888777777


Q ss_pred             ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          333 SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ..+.++++|..|.+.+|+ +..+|..+..+++|+.|
T Consensus       226 ~~~~~~~~l~~l~l~~n~-~~~~~~~~~~l~~l~~L  260 (394)
T COG4886         226 SSLSNLKNLSGLELSNNK-LEDLPESIGNLSNLETL  260 (394)
T ss_pred             hhhhhcccccccccCCce-eeeccchhcccccccee
Confidence            778888888888877776 55667777777666554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.00  E-value=4.4e-06  Score=56.13  Aligned_cols=40  Identities=33%  Similarity=0.580  Sum_probs=31.9

Q ss_pred             cCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCc
Q 017543          293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPS  333 (369)
Q Consensus       293 ~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~  333 (369)
                      ++|++|+|++ +.+..+|. +++|++|+.|++++|+|+.+|.
T Consensus         1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccC-CCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            4688888888 67888888 9999999999999999887764

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.90  E-value=1.2e-06  Score=73.10  Aligned_cols=89  Identities=19%  Similarity=0.299  Sum_probs=78.5

Q ss_pred             ccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      ....|...+|++| .++.+|+.+  ..+.++.|+|++ |.+..+|+ +..|+.|+.|+++.|.+...|.-|-.|.+|-.|
T Consensus        51 ~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   51 KGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML  128 (177)
T ss_pred             CCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence            4567888899999 699999988  677999999998 88999997 999999999999999999999999889999999


Q ss_pred             ecccCCCCCcCCccc
Q 017543          345 DLEDCKSLKSLPSGL  359 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i  359 (369)
                      +..+|. ...||-.+
T Consensus       129 ds~~na-~~eid~dl  142 (177)
T KOG4579|consen  129 DSPENA-RAEIDVDL  142 (177)
T ss_pred             cCCCCc-cccCcHHH
Confidence            998887 77777554

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.88  E-value=2e-05  Score=77.71  Aligned_cols=102  Identities=25%  Similarity=0.528  Sum_probs=69.1

Q ss_pred             HHHHHHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCC
Q 017543          238 KLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAAN  317 (369)
Q Consensus       238 ~l~~W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~  317 (369)
                      ++..| ..++.+.+..| .+..+|.   +  ..+|+.|.+++|..+..+|..+ ..+|++|++++|..+..+|+     +
T Consensus        47 r~~~~-~~l~~L~Is~c-~L~sLP~---L--P~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~-----s  113 (426)
T PRK15386         47 QIEEA-RASGRLYIKDC-DIESLPV---L--PNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE-----S  113 (426)
T ss_pred             HHHHh-cCCCEEEeCCC-CCcccCC---C--CCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc-----c
Confidence            35555 34556666666 4666652   1  2468899999988888888655 35788999998877777774     3


Q ss_pred             CCEEEeecCC---CcccCccccCC------------------CCCcEEecccCCCC
Q 017543          318 IEEMFLNGTA---IEELPSSIECL------------------YKLLHLDLEDCKSL  352 (369)
Q Consensus       318 L~~L~Ls~n~---l~~LP~~i~~L------------------~~L~~L~Ls~n~~l  352 (369)
                      |+.|+++++.   |..||.+|..|                  .+|++|++.+|..+
T Consensus       114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            5666666553   56777777655                  26888888887743

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.85  E-value=7.3e-07  Score=85.78  Aligned_cols=112  Identities=22%  Similarity=0.284  Sum_probs=83.7

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      -|.+..+|... ++.+++|+.|+|++| .++.+ |..+ .|.+|..|-+.++|+|+.+|.  +++|..|+.|.+.-|++.
T Consensus        76 qN~I~~iP~~a-F~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~  153 (498)
T KOG4237|consen   76 QNQISSIPPGA-FKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN  153 (498)
T ss_pred             cCCcccCChhh-ccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence            36677777654 467888888888888 46665 4445 788888888888788888884  888888888888888888


Q ss_pred             ccCc-cccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          330 ELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      -++. .+..|++|..|.+.+|. +..++. .+..+..++++
T Consensus       154 Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tl  193 (498)
T KOG4237|consen  154 CIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTL  193 (498)
T ss_pred             chhHHHHHHhhhcchhcccchh-hhhhccccccchhccchH
Confidence            6554 46888888888888887 777877 45555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=9.7e-07  Score=73.56  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=76.3

Q ss_pred             eeEEeecCCCCCCCcCccc----cccCccEEEccCCCCCCcCCC-C-CCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          272 LVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-I-SSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       272 L~~L~L~~n~~l~~lP~~i----~L~~L~~L~Ls~~~~l~~lP~-i-~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      +-.|+|+.| .+..++...    ....|...+|++ |.+..+|. + .+.+-++.|+|++|.|..+|.++..++.|+.|+
T Consensus        29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccc-hhhHHHHHHHHHhCCceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            445678888 477666655    456677789999 78999997 4 456689999999999999999999999999999


Q ss_pred             cccCCCCCcCCccccCCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++.|+ +...|.-|..|.+|-.|
T Consensus       107 l~~N~-l~~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen  107 LRFNP-LNAEPRVIAPLIKLDML  128 (177)
T ss_pred             cccCc-cccchHHHHHHHhHHHh
Confidence            99998 77888888777666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.65  E-value=1.7e-05  Score=79.16  Aligned_cols=88  Identities=27%  Similarity=0.396  Sum_probs=69.4

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+.+|..|++.+| .+..+...+ .+++|++|+|++ |.|+.+..+..|+.|+.|++++|.|..++. +..|..|+.|
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLL  167 (414)
T ss_pred             cccccceeeeecccc-chhhcccchhhhhcchheeccc-cccccccchhhccchhhheeccCcchhccC-Cccchhhhcc
Confidence            566788888888888 577777656 788888999988 778888888888888888888888887754 5668888888


Q ss_pred             ecccCCCCCcCCc
Q 017543          345 DLEDCKSLKSLPS  357 (369)
Q Consensus       345 ~Ls~n~~l~~lP~  357 (369)
                      ++++|. +..++.
T Consensus       168 ~l~~n~-i~~ie~  179 (414)
T KOG0531|consen  168 DLSYNR-IVDIEN  179 (414)
T ss_pred             cCCcch-hhhhhh
Confidence            888887 555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.65  E-value=4.1e-05  Score=75.49  Aligned_cols=84  Identities=29%  Similarity=0.553  Sum_probs=64.9

Q ss_pred             ccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecC-CCcccCccccCCCCCcEEe
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n-~l~~LP~~i~~L~~L~~L~  345 (369)
                      .+.++..|++++| .+..+|. + ..+|+.|.+++|+.+..+|+ +.  .+|++|++++| .+..||.+      |+.|+
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~-L-P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV-L-PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC-C-CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence            3567889999999 6999983 2 34699999999999999997 63  68999999999 88899976      44444


Q ss_pred             cccC--CCCCcCCccccCC
Q 017543          346 LEDC--KSLKSLPSGLFLC  362 (369)
Q Consensus       346 Ls~n--~~l~~lP~~i~~L  362 (369)
                      |.++  ..++.||.++..|
T Consensus       119 L~~n~~~~L~~LPssLk~L  137 (426)
T PRK15386        119 IKGSATDSIKNVPNGLTSL  137 (426)
T ss_pred             eCCCCCcccccCcchHhhe
Confidence            5443  3477888777555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.65  E-value=3.9e-06  Score=80.86  Aligned_cols=96  Identities=24%  Similarity=0.291  Sum_probs=77.0

Q ss_pred             eeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeec-CCCcccCcc-ccCCCCCcEE
Q 017543          271 TLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNG-TAIEELPSS-IECLYKLLHL  344 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~-n~l~~LP~~-i~~L~~L~~L  344 (369)
                      .-+.+.|..| .++.+|++.  .+.+|+.|||++ |.|..|- + +..|.+|-.|-+-+ |+|+.||.. ++.|..|+-|
T Consensus        68 ~tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~-N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   68 ETVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSK-NNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             cceEEEeccC-CcccCChhhccchhhhceecccc-cchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            4567888899 699999987  899999999999 6677775 4 88998888776655 899999987 6999999999


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+.-|+........+..|++|+.|
T Consensus       146 llNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen  146 LLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hcChhhhcchhHHHHHHhhhcchh
Confidence            999888544445556667776543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.59  E-value=1.2e-05  Score=76.55  Aligned_cols=98  Identities=21%  Similarity=0.247  Sum_probs=70.4

Q ss_pred             ceeeEEeecCCCCCC-----CcCccc-cc-cCccEEEccCCCCCC----cCCC-CCCCCCCCEEEeecCCCc-----ccC
Q 017543          270 NTLVVLNLRDCKSLK-----SLPAGI-HL-EFLKELDLSGCSKLK----RLPD-ISSAANIEEMFLNGTAIE-----ELP  332 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~-----~lP~~i-~L-~~L~~L~Ls~~~~l~----~lP~-i~~L~~L~~L~Ls~n~l~-----~LP  332 (369)
                      ++|+.|++++|. +.     .+...+ .+ ++|+.|+|++|....    .++. +..+.+|++|+|++|.+.     .++
T Consensus       108 ~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence            349999999994 44     233344 56 899999999976442    3344 667889999999999887     455


Q ss_pred             ccccCCCCCcEEecccCCCC----CcCCccccCCCCCCCC
Q 017543          333 SSIECLYKLLHLDLEDCKSL----KSLPSGLFLCRNKCRI  368 (369)
Q Consensus       333 ~~i~~L~~L~~L~Ls~n~~l----~~lP~~i~~L~~L~~L  368 (369)
                      ..+..+++|++|+|++|.+.    +.++..+..+++|++|
T Consensus       187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVL  226 (319)
T ss_pred             HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEE
Confidence            66677789999999999743    2344455566777765

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=3e-05  Score=75.74  Aligned_cols=99  Identities=21%  Similarity=0.273  Sum_probs=66.1

Q ss_pred             ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCcc--cCcc-----cc
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIEE--LPSS-----IE  336 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~~--LP~~-----i~  336 (369)
                      .+++|..|+|..|..+..--... -+..|+.|||++|+ +..++.   ++.|+.|..|+++.|.|.+  +|+.     ..
T Consensus       220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            35566666666663222111122 47789999999844 555662   8899999999999998874  4654     35


Q ss_pred             CCCCCcEEecccCCCCCcCC--ccccCCCCCCCC
Q 017543          337 CLYKLLHLDLEDCKSLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       337 ~L~~L~~L~Ls~n~~l~~lP--~~i~~L~~L~~L  368 (369)
                      ...+|++|++..|+ +..+|  ..+..+++|++|
T Consensus       299 ~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l  331 (505)
T KOG3207|consen  299 TFPKLEYLNISENN-IRDWRSLNHLRTLENLKHL  331 (505)
T ss_pred             ccccceeeecccCc-cccccccchhhccchhhhh
Confidence            67889999999988 54444  345566666665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.52  E-value=7.2e-06  Score=84.38  Aligned_cols=92  Identities=29%  Similarity=0.336  Sum_probs=67.9

Q ss_pred             hhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCC--CCCCCCEEEeecCCC
Q 017543          252 SACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDIS--SAANIEEMFLNGTAI  328 (369)
Q Consensus       252 l~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~--~L~~L~~L~Ls~n~l  328 (369)
                      .+||.+..+...  +.-++.|+.|+|+.| ++..+. .+ .|+.|+.|||+. |.+..+|.++  .+. |+.|+|++|.+
T Consensus       171 fsyN~L~~mD~S--Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~lrnN~l  244 (1096)
T KOG1859|consen  171 FSYNRLVLMDES--LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLNLRNNAL  244 (1096)
T ss_pred             cchhhHHhHHHH--HHHHHHhhhhccchh-hhhhhH-HHHhccccccccccc-chhccccccchhhhh-heeeeecccHH
Confidence            344554444332  455788889999998 466665 44 788899999998 7788888632  344 88899999988


Q ss_pred             cccCccccCCCCCcEEecccCC
Q 017543          329 EELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       329 ~~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      ++| .+|.+|++|+.|||+.|-
T Consensus       245 ~tL-~gie~LksL~~LDlsyNl  265 (1096)
T KOG1859|consen  245 TTL-RGIENLKSLYGLDLSYNL  265 (1096)
T ss_pred             Hhh-hhHHhhhhhhccchhHhh
Confidence            888 458889999999998875

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.47  E-value=2.8e-05  Score=74.02  Aligned_cols=85  Identities=26%  Similarity=0.319  Sum_probs=64.0

Q ss_pred             ccc-ceeeEEeecCCCCCC-----CcCccc-cccCccEEEccCCCCCC----cCCC-CCCCCCCCEEEeecCCCc-----
Q 017543          267 QHL-NTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLK----RLPD-ISSAANIEEMFLNGTAIE-----  329 (369)
Q Consensus       267 ~~l-~~L~~L~L~~n~~l~-----~lP~~i-~L~~L~~L~Ls~~~~l~----~lP~-i~~L~~L~~L~Ls~n~l~-----  329 (369)
                      ..+ ++|+.|++++|. +.     .++..+ .+.+|+.|+|++|+...    .++. +..+++|+.|+|++|.+.     
T Consensus       133 ~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  211 (319)
T cd00116         133 KDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS  211 (319)
T ss_pred             HhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH
Confidence            345 789999999995 54     234444 67899999999965432    2333 556689999999999885     


Q ss_pred             ccCccccCCCCCcEEecccCCCC
Q 017543          330 ELPSSIECLYKLLHLDLEDCKSL  352 (369)
Q Consensus       330 ~LP~~i~~L~~L~~L~Ls~n~~l  352 (369)
                      .++..+..+++|++|++++|++.
T Consensus       212 ~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         212 ALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHhcccCCCCEEecCCCcCc
Confidence            45566778899999999999844

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.07  E-value=0.00017  Score=72.04  Aligned_cols=84  Identities=26%  Similarity=0.382  Sum_probs=68.9

Q ss_pred             cceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEec
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~L  346 (369)
                      +..+..+.++.| .++.+-..+ .+++|..|++.+ +.+..+.. +..|++|++|+|++|.|+.+. .+..|..|+.|++
T Consensus        71 l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchh-hhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheecccccccccc-chhhccchhhhee
Confidence            455666667777 466644445 789999999999 78999998 999999999999999999885 4788889999999


Q ss_pred             ccCCCCCcCC
Q 017543          347 EDCKSLKSLP  356 (369)
Q Consensus       347 s~n~~l~~lP  356 (369)
                      ++|. +..++
T Consensus       148 ~~N~-i~~~~  156 (414)
T KOG0531|consen  148 SGNL-ISDIS  156 (414)
T ss_pred             ccCc-chhcc
Confidence            9998 55554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.06  E-value=0.00051  Score=63.17  Aligned_cols=82  Identities=28%  Similarity=0.353  Sum_probs=53.1

Q ss_pred             cccceeeEEeecCCCCCCCcCccccccCccEEEccCC--CCCCcCCC-CCCCCCCCEEEeecCCCcc---cCccccCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGC--SKLKRLPD-ISSAANIEEMFLNGTAIEE---LPSSIECLYK  340 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~--~~l~~lP~-i~~L~~L~~L~Ls~n~l~~---LP~~i~~L~~  340 (369)
                      ..+.+|..|.+.++ .+.++-..-.|++|+.|.+++|  .....++. ..++++|++|+|++|+|+-   ++. +..|.+
T Consensus        40 d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN  117 (260)
T ss_pred             ccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence            34566777777666 3443332226788888888886  33444554 4556888888888887763   322 466777


Q ss_pred             CcEEecccCC
Q 017543          341 LLHLDLEDCK  350 (369)
Q Consensus       341 L~~L~Ls~n~  350 (369)
                      |..|++.+|.
T Consensus       118 L~~Ldl~n~~  127 (260)
T KOG2739|consen  118 LKSLDLFNCS  127 (260)
T ss_pred             hhhhhcccCC
Confidence            7788888776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.00  E-value=3e-05  Score=71.88  Aligned_cols=96  Identities=22%  Similarity=0.308  Sum_probs=52.0

Q ss_pred             eeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCcEEeccc
Q 017543          271 TLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLHLDLED  348 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~  348 (369)
                      +.+.|++.|| .+..+.-..+++.|++|.|+- |++..+-.+..|++|++|.|..|.|..|-+  -+.+|++|+.|.|..
T Consensus        20 ~vkKLNcwg~-~L~DIsic~kMp~lEVLsLSv-NkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDISICEKMPLLEVLSLSV-NKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCC-CccHHHHHHhcccceeEEeec-cccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            3444555555 344443222566666666665 555555555666666666666666655533  245666666666666


Q ss_pred             CCCCCcCCcc-----ccCCCCCCCC
Q 017543          349 CKSLKSLPSG-----LFLCRNKCRI  368 (369)
Q Consensus       349 n~~l~~lP~~-----i~~L~~L~~L  368 (369)
                      |+..+.-+.+     +--|+||++|
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKL  122 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKL  122 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhc
Confidence            6655555543     2335555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.89  E-value=0.0014  Score=58.31  Aligned_cols=89  Identities=27%  Similarity=0.348  Sum_probs=68.9

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~  329 (369)
                      +.+..++.   ++.++.|.+|.|.+| .+..+-+.+  -+++|+.|.|.+ |.+.++-+   +..|+.|++|.+-+|.++
T Consensus        52 Ndl~~l~~---lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   52 NDLRKLDN---LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchhhccc---CCCccccceEEecCC-cceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCCchh
Confidence            44444433   567888999999888 688888888  578899999998 55666664   667889999999999888


Q ss_pred             ccCc----cccCCCCCcEEeccc
Q 017543          330 ELPS----SIECLYKLLHLDLED  348 (369)
Q Consensus       330 ~LP~----~i~~L~~L~~L~Ls~  348 (369)
                      ..+.    -|.++++|++||..+
T Consensus       127 ~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  127 HKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cccCceeEEEEecCcceEeehhh
Confidence            7664    367899999999864

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.74  E-value=0.00051  Score=38.82  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=11.7

Q ss_pred             CCCEEEeecCCCcccCccccC
Q 017543          317 NIEEMFLNGTAIEELPSSIEC  337 (369)
Q Consensus       317 ~L~~L~Ls~n~l~~LP~~i~~  337 (369)
                      +|++|+|++|.|+++|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            355566666655555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.74  E-value=0.0001  Score=76.23  Aligned_cols=103  Identities=25%  Similarity=0.193  Sum_probs=78.6

Q ss_pred             HHHhhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCE
Q 017543          242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEE  320 (369)
Q Consensus       242 W~~aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~  320 (369)
                      ...+++.+.+.+ |.+.+.   .++..+++|..|||+.| .+..+|.-- .-..|+.|.|++ |.++.+-.|.+|.+|+.
T Consensus       185 ll~ale~LnLsh-Nk~~~v---~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~  258 (1096)
T KOG1859|consen  185 LLPALESLNLSH-NKFTKV---DNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYG  258 (1096)
T ss_pred             HHHHhhhhccch-hhhhhh---HHHHhcccccccccccc-hhccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhc
Confidence            334454444433 444433   34778999999999999 689888654 333499999998 78898988999999999


Q ss_pred             EEeecCCCcccCc--cccCCCCCcEEecccCC
Q 017543          321 MFLNGTAIEELPS--SIECLYKLLHLDLEDCK  350 (369)
Q Consensus       321 L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~n~  350 (369)
                      |||++|-|....+  -++.|..|+.|.|.||+
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            9999998864322  26789999999999998

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=96.65  E-value=0.0025  Score=56.76  Aligned_cols=97  Identities=22%  Similarity=0.291  Sum_probs=68.6

Q ss_pred             cceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CC-CCCCCCEEEeecCCCcccCc--cccCCCCCcEE
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-IS-SAANIEEMFLNGTAIEELPS--SIECLYKLLHL  344 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~-~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~L  344 (369)
                      +.....++|++| .+..++.--.+..|..|.|++ |.|..|-+ +. -+++|..|.|.+|.|.+|-+  .+..+++|++|
T Consensus        41 ~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceeccccc-chhhcccCCCccccceEEecC-CcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence            346778899998 577666433889999999998 66777765 65 46779999999999887643  35678899999


Q ss_pred             ecccCCCCCcCCc----cccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPS----GLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~----~i~~L~~L~~L  368 (369)
                      .+-+|+ ....+.    -+..+++|+.|
T Consensus       119 tll~Np-v~~k~~YR~yvl~klp~l~~L  145 (233)
T KOG1644|consen  119 TLLGNP-VEHKKNYRLYVLYKLPSLRTL  145 (233)
T ss_pred             eecCCc-hhcccCceeEEEEecCcceEe
Confidence            998887 333221    24455555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.53  E-value=0.00066  Score=71.91  Aligned_cols=82  Identities=23%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             ccceeeEEeecCCCCC-CCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCcE
Q 017543          268 HLNTLVVLNLRDCKSL-KSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLLH  343 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l-~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~~  343 (369)
                      .|+.|+.|.+.|-... ..+-.-. ++++|..||+|+ +++..+-.|++|+||+.|.+.+=.++.-+.  .+-+|++|++
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            4788888888874211 1222222 688899999998 667777558899999999887766665443  4678999999


Q ss_pred             EecccCC
Q 017543          344 LDLEDCK  350 (369)
Q Consensus       344 L~Ls~n~  350 (369)
                      ||+|..+
T Consensus       225 LDIS~~~  231 (699)
T KOG3665|consen  225 LDISRDK  231 (699)
T ss_pred             eeccccc
Confidence            9998765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.00041  Score=67.97  Aligned_cols=82  Identities=18%  Similarity=0.173  Sum_probs=59.8

Q ss_pred             ccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC--ccccCCCCC
Q 017543          268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP--SSIECLYKL  341 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L  341 (369)
                      .+..|..|.|+.|. +..  +-... .+++|..|+|..|+.+...-. ...+..|+.|||++|++..+|  .-++.|+.|
T Consensus       195 ~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccch
Confidence            56788888888883 542  22222 578899999998643322222 445677999999999998888  457999999


Q ss_pred             cEEecccCC
Q 017543          342 LHLDLEDCK  350 (369)
Q Consensus       342 ~~L~Ls~n~  350 (369)
                      ..|+++.|.
T Consensus       274 ~~Lnls~tg  282 (505)
T KOG3207|consen  274 NQLNLSSTG  282 (505)
T ss_pred             hhhhccccC
Confidence            999999887

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.26  E-value=0.0026  Score=67.42  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=65.1

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCcccCc-------c
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIEELPS-------S  334 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~~LP~-------~  334 (369)
                      ..++++|..||++++ +++.+ .++ +|++|++|.+.+ -.++.-.+   +.+|++|+.||+|...-..-|.       .
T Consensus       169 c~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec  245 (699)
T KOG3665|consen  169 CASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC  245 (699)
T ss_pred             hhccCccceeecCCC-CccCc-HHHhccccHHHHhccC-CCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence            347899999999999 58888 677 999999999997 55655553   7899999999999875443332       1


Q ss_pred             ccCCCCCcEEecccCCC
Q 017543          335 IECLYKLLHLDLEDCKS  351 (369)
Q Consensus       335 i~~L~~L~~L~Ls~n~~  351 (369)
                      -..|++|+.||.+++..
T Consensus       246 ~~~LpeLrfLDcSgTdi  262 (699)
T KOG3665|consen  246 GMVLPELRFLDCSGTDI  262 (699)
T ss_pred             cccCccccEEecCCcch
Confidence            13599999999998763

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.11  E-value=0.0029  Score=58.23  Aligned_cols=75  Identities=20%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             cCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecC--CCc-ccCccccCCCCCcEEecccCCCCCcCCccccC
Q 017543          286 LPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT--AIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       286 lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n--~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      +.... .+..|+.|.+.++ .+..+-.+..|++|++|.++.|  .+. .|+.-+.++++|++|++++|+ +.. ++++--
T Consensus        35 ~~gl~d~~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhcc-ceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccch
Confidence            44334 6777788877763 3444444667889999999999  665 787777888999999999998 332 444433


Q ss_pred             CC
Q 017543          362 CR  363 (369)
Q Consensus       362 L~  363 (369)
                      ++
T Consensus       112 l~  113 (260)
T KOG2739|consen  112 LK  113 (260)
T ss_pred             hh
Confidence            33

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0036  Score=35.29  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=18.1

Q ss_pred             CCcEEecccCCCCCcCCccccCC
Q 017543          340 KLLHLDLEDCKSLKSLPSGLFLC  362 (369)
Q Consensus       340 ~L~~L~Ls~n~~l~~lP~~i~~L  362 (369)
                      +|++|+|++|+ ++.||.++.+|
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTTTT-
T ss_pred             CccEEECCCCc-CEeCChhhcCC
Confidence            58999999997 66999997654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=95.60  E-value=0.0087  Score=59.20  Aligned_cols=85  Identities=18%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCc--------ccccc
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA--------SSRWF  184 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~--------~S~~c  184 (369)
                      -|||||||... -+-..+.|-.-|.-+|.++||     ..|+ ..+.|++.|...+-+|.|++||-.        +..|.
T Consensus       613 ~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nCeDWV  690 (832)
T KOG3678|consen  613 IDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNCEDWV  690 (832)
T ss_pred             cceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccHHHHH
Confidence            39999999763 445666566677889999999     3444 445899999999999999999743        23344


Q ss_pred             cccceeeEEeeeccCeEEeeeeec
Q 017543          185 FDKLVKILQCKRVYGQIVLPVFYG  208 (369)
Q Consensus       185 l~ELv~i~~~~~~~~l~vlPiFy~  208 (369)
                      -.|++    |.-+.+..|+|||..
T Consensus       691 HKEl~----~Afe~~KNIiPI~D~  710 (832)
T KOG3678|consen  691 HKELK----CAFEHQKNIIPIFDT  710 (832)
T ss_pred             HHHHH----HHHHhcCCeeeeecc
Confidence            44443    333455688999864

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.22  E-value=0.011  Score=31.13  Aligned_cols=16  Identities=25%  Similarity=0.519  Sum_probs=5.9

Q ss_pred             CCCEEEeecCCCcccC
Q 017543          317 NIEEMFLNGTAIEELP  332 (369)
Q Consensus       317 ~L~~L~Ls~n~l~~LP  332 (369)
                      +|+.|+|++|.|++||
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3455555555554444

...

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=94.93  E-value=0.028  Score=46.76  Aligned_cols=75  Identities=16%  Similarity=0.291  Sum_probs=37.4

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhC-------Ccce-Ee---------c-----cCcchhHHHHHHHHHcceeeEEec
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQK-------SIET-FI---------N-----RGDEISQSLVDAIEASAISLIIFS  175 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~-------gi~~-~~---------~-----~G~~i~~~l~~~ie~S~i~ivv~S  175 (369)
                      |.|||||+..|-. .....|...+...       .+.. |.         .     ..+.|...|.++|..|.+.||+.+
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            4799999998855 3444444444441       2211 11         1     223677899999999999999999


Q ss_pred             cCCcccccccccceeeEE
Q 017543          176 EGYASSRWFFDKLVKILQ  193 (369)
Q Consensus       176 ~~y~~S~~cl~ELv~i~~  193 (369)
                      ++-..|.|+-+|+...++
T Consensus        80 ~~T~~s~wV~~EI~~A~~   97 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK   97 (130)
T ss_dssp             TT----HHHHHHHHHHTT
T ss_pred             CCcccCcHHHHHHHHHHH
Confidence            999999999999975443

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.0014  Score=61.67  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=13.8

Q ss_pred             hHhhhhhhccCCCCCCCCCCchhHHH
Q 017543           26 RWMSQEVRESSPRTSAASGDDWRSAF   51 (369)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (369)
                      |.|.||.-+-+.++.-.-+-+|..+=
T Consensus         3 ~~h~q~i~~lss~v~~s~~~s~~s~~   28 (419)
T KOG2120|consen    3 RKHLQEIPDLSSNVATSFTWSWDSSK   28 (419)
T ss_pred             hhhhhhccCccchhhcccCcccchhH
Confidence            56788885433333323455565543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.23  E-value=0.031  Score=32.57  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=12.6

Q ss_pred             CCCCCEEEeecCCCcccCccc
Q 017543          315 AANIEEMFLNGTAIEELPSSI  335 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~LP~~i  335 (369)
                      |++|++|+|++|.|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.23  E-value=0.031  Score=32.57  Aligned_cols=21  Identities=24%  Similarity=0.452  Sum_probs=12.6

Q ss_pred             CCCCCEEEeecCCCcccCccc
Q 017543          315 AANIEEMFLNGTAIEELPSSI  335 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~LP~~i  335 (369)
                      |++|++|+|++|.|+.+|..+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            345666666666666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.18  E-value=0.01  Score=55.95  Aligned_cols=13  Identities=38%  Similarity=0.398  Sum_probs=6.3

Q ss_pred             ccceeeEEeecCC
Q 017543          268 HLNTLVVLNLRDC  280 (369)
Q Consensus       268 ~l~~L~~L~L~~n  280 (369)
                      +++.|++|+|+.|
T Consensus        95 ~lP~l~~LNls~N  107 (418)
T KOG2982|consen   95 QLPALTTLNLSCN  107 (418)
T ss_pred             cCccceEeeccCC
Confidence            3444555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.47  E-value=0.0046  Score=57.68  Aligned_cols=78  Identities=23%  Similarity=0.291  Sum_probs=61.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC---CCCCCCCCEEEeecCCCc-ccCcc-----cc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD---ISSAANIEEMFLNGTAIE-ELPSS-----IE  336 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~L~Ls~n~l~-~LP~~-----i~  336 (369)
                      ...++.|++|.|+-| .+.+|-+-..++.|+.|+|.. |.|..|-+   +.+|++|+.|.|..|... +-+..     |.
T Consensus        37 c~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR  114 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR  114 (388)
T ss_pred             HHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence            457889999999999 588887644899999999999 77888876   789999999999998654 33332     34


Q ss_pred             CCCCCcEEe
Q 017543          337 CLYKLLHLD  345 (369)
Q Consensus       337 ~L~~L~~L~  345 (369)
                      -|++|+.||
T Consensus       115 ~LPnLkKLD  123 (388)
T KOG2123|consen  115 VLPNLKKLD  123 (388)
T ss_pred             Hcccchhcc
Confidence            566676664

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.41  E-value=0.046  Score=28.70  Aligned_cols=17  Identities=47%  Similarity=0.649  Sum_probs=11.5

Q ss_pred             CCCcEEecccCCCCCcCC
Q 017543          339 YKLLHLDLEDCKSLKSLP  356 (369)
Q Consensus       339 ~~L~~L~Ls~n~~l~~lP  356 (369)
                      ++|+.|+|++|+ +.+||
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            479999999999 78877

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.79  E-value=0.088  Score=30.62  Aligned_cols=23  Identities=48%  Similarity=0.693  Sum_probs=20.0

Q ss_pred             CCCCcEEecccCCCCCcCCccccC
Q 017543          338 LYKLLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       338 L~~L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      |++|++|+|++|+ +..||.+++.
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHHcc
Confidence            5789999999998 9999998764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.79  E-value=0.088  Score=30.62  Aligned_cols=23  Identities=48%  Similarity=0.693  Sum_probs=20.0

Q ss_pred             CCCCcEEecccCCCCCcCCccccC
Q 017543          338 LYKLLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       338 L~~L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      |++|++|+|++|+ +..||.+++.
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHHcc
Confidence            5789999999998 9999998764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.51  E-value=0.0028  Score=57.65  Aligned_cols=84  Identities=19%  Similarity=0.158  Sum_probs=69.2

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~  343 (369)
                      +..+...+.||++.| .+..+...+ -++.|..|+++. +.+..+|. .+.+..+..+++..|..+.+|.+.++++.+++
T Consensus        38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            345677888999888 466777777 688888899997 77888886 88888888888888899999999999999999


Q ss_pred             EecccCCC
Q 017543          344 LDLEDCKS  351 (369)
Q Consensus       344 L~Ls~n~~  351 (369)
                      +++.+|.+
T Consensus       116 ~e~k~~~~  123 (326)
T KOG0473|consen  116 NEQKKTEF  123 (326)
T ss_pred             hhhccCcc
Confidence            99888774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=91.93  E-value=0.028  Score=54.00  Aligned_cols=84  Identities=29%  Similarity=0.397  Sum_probs=60.4

Q ss_pred             ccccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc----CCC--CCCCCCCCEEEeecCCCc----
Q 017543          266 SQHLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD--ISSAANIEEMFLNGTAIE----  329 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~----lP~--i~~L~~L~~L~Ls~n~l~----  329 (369)
                      +..+++|++|+|++|. ++.     +...+ .+++|+.|++++|..-..    +-+  -...++|+.|.|.+|.|+    
T Consensus       209 l~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            4568899999999984 432     23333 577899999999864322    222  234688999999999886    


Q ss_pred             -ccCccccCCCCCcEEecccCC
Q 017543          330 -ELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       330 -~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                       .+-..+...+.|..|+|++|.
T Consensus       288 ~~la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCccc
Confidence             344556778899999999998

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=91.68  E-value=0.0046  Score=56.27  Aligned_cols=76  Identities=16%  Similarity=0.125  Sum_probs=66.3

Q ss_pred             cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          291 HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       291 ~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .....++||++. +.+..+-. ++.++.|..|+++.|.|..+|...+.+..+.++++.+|+ +..+|.+...++.++.+
T Consensus        40 ~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~  116 (326)
T KOG0473|consen   40 SFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKN  116 (326)
T ss_pred             ccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchh
Confidence            577888999998 55656665 778899999999999999999999999999999999877 89999999998887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=91.32  E-value=0.038  Score=52.21  Aligned_cols=59  Identities=24%  Similarity=0.212  Sum_probs=28.5

Q ss_pred             cccCccEEEccCCCCCCcC--CCCCCCCCCCEEEeecCC-Cc-ccCccccCCCCCcEEecccC
Q 017543          291 HLEFLKELDLSGCSKLKRL--PDISSAANIEEMFLNGTA-IE-ELPSSIECLYKLLHLDLEDC  349 (369)
Q Consensus       291 ~L~~L~~L~Ls~~~~l~~l--P~i~~L~~L~~L~Ls~n~-l~-~LP~~i~~L~~L~~L~Ls~n  349 (369)
                      ..++|..|||++|..+..=  -++-++..|++|.|+.|. |- +.--.++..++|.+|++.+|
T Consensus       311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            3455556666665544431  014455556666665552 21 11123455555666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.98  E-value=0.36  Score=39.14  Aligned_cols=92  Identities=17%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+..|+.+.+.++  +..++...  ++.+|+.+.+.+  .+..++.  +..+++|+.+++..+ +..++.. +.+. +
T Consensus        31 F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~  104 (129)
T PF13306_consen   31 FSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-N  104 (129)
T ss_dssp             TTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T
T ss_pred             ccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccccCcc-ccEEchhhhcCC-C
Confidence            445667788887764  66666655  666788888864  4566665  667888888888665 6666554 4555 7


Q ss_pred             CcEEecccCCCCCcCCccc-cCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGL-FLCRNK  365 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i-~~L~~L  365 (369)
                      |+.+.+.. . +..++... .++++|
T Consensus       105 l~~i~~~~-~-~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  105 LKEINIPS-N-ITKIEENAFKNCTKL  128 (129)
T ss_dssp             --EEE-TT-B--SS----GGG-----
T ss_pred             ceEEEECC-C-ccEECCccccccccC
Confidence            88887764 2 45555543 334444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=89.05  E-value=1  Score=36.41  Aligned_cols=87  Identities=13%  Similarity=0.257  Sum_probs=50.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+.+|+.+.+..+  +..++...  .+.+|+.+.+.+ + +..++.  +.++.+|+.+.+.. .+..++.. +..+.+
T Consensus         8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~-~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPN-N-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESS-T-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HhCCCCCCEEEECCC--eeEeChhhcccccccccccccc-c-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            445667888887753  66777665  677888888886 3 777885  77887899998865 66666654 456888


Q ss_pred             CcEEecccCCCCCcCCccc
Q 017543          341 LLHLDLEDCKSLKSLPSGL  359 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i  359 (369)
                      |+.+++..+  +..++...
T Consensus        83 l~~i~~~~~--~~~i~~~~   99 (129)
T PF13306_consen   83 LKNIDIPSN--ITEIGSSS   99 (129)
T ss_dssp             ECEEEETTT---BEEHTTT
T ss_pred             ccccccCcc--ccEEchhh
Confidence            888888643  44555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=88.38  E-value=0.28  Score=45.98  Aligned_cols=39  Identities=26%  Similarity=0.374  Sum_probs=18.1

Q ss_pred             cccCccEEEccCCCCCCcCCC-----CCCCCCCCEEEeecCCCc
Q 017543          291 HLEFLKELDLSGCSKLKRLPD-----ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       291 ~L~~L~~L~Ls~~~~l~~lP~-----i~~L~~L~~L~Ls~n~l~  329 (369)
                      +++.|+..+||+|-.-..+|+     |.+-++|+.|.|++|.+.
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence            344555555555333222332     344455555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.04  E-value=0.2  Score=47.52  Aligned_cols=83  Identities=24%  Similarity=0.306  Sum_probs=59.4

Q ss_pred             cccceeeEEeecCCCCCCCcC---ccc-cccCccEEEccCCCCCCcCCCC-CCCCCCCEEEeecCCCc--ccCccccCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPDI-SSAANIEEMFLNGTAIE--ELPSSIECLY  339 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP---~~i-~L~~L~~L~Ls~~~~l~~lP~i-~~L~~L~~L~Ls~n~l~--~LP~~i~~L~  339 (369)
                      ..++.++.|+|.+| .+..-.   .-+ +|+.|+.|+|+.|..-..|-.+ -.+.||+.|-|.++.+.  .+-..+..|+
T Consensus        68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            34677889999999 465433   223 8999999999975332112112 35678999999999775  6666678898


Q ss_pred             CCcEEecccCC
Q 017543          340 KLLHLDLEDCK  350 (369)
Q Consensus       340 ~L~~L~Ls~n~  350 (369)
                      +++.|+++.|+
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            99999888885

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=86.32  E-value=0.15  Score=51.15  Aligned_cols=87  Identities=29%  Similarity=0.410  Sum_probs=54.5

Q ss_pred             ccccceeeEEeecCC-CCCCCcC---ccc--cccCccEEEccCCCCCCcCC--CCC-CCCCCCEEEeecCC-Cc--ccCc
Q 017543          266 SQHLNTLVVLNLRDC-KSLKSLP---AGI--HLEFLKELDLSGCSKLKRLP--DIS-SAANIEEMFLNGTA-IE--ELPS  333 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n-~~l~~lP---~~i--~L~~L~~L~Ls~~~~l~~lP--~i~-~L~~L~~L~Ls~n~-l~--~LP~  333 (369)
                      ...++.|+.|+++++ ......+   ..+  .+.+|+.|+++.|..+...-  .+. .+++|+.|.+.++. ++  .|=.
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            345678888888873 2222222   112  46788888888876544332  122 37788888877664 54  3333


Q ss_pred             cccCCCCCcEEecccCCCC
Q 017543          334 SIECLYKLLHLDLEDCKSL  352 (369)
Q Consensus       334 ~i~~L~~L~~L~Ls~n~~l  352 (369)
                      -...++.|++|+|+.|..+
T Consensus       290 i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             HHHhcCcccEEeeecCccc
Confidence            3356778999999888754

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=86.09  E-value=2  Score=35.47  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=43.7

Q ss_pred             CeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccC
Q 017543          119 GVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEG  177 (369)
Q Consensus       119 dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~  177 (369)
                      .|||-|. +|..  ....+...|+..|+.+-+     ..|..|.+.|.+...++..+|++++|+
T Consensus         1 kVFIvhg-~~~~--~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD   61 (125)
T PF10137_consen    1 KVFIVHG-RDLA--AAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD   61 (125)
T ss_pred             CEEEEeC-CCHH--HHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence            3888887 5532  444566677767877766     788999999999999999999999984

Their exact function has not, as yet, been defined.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.01  E-value=0.42  Score=28.05  Aligned_cols=17  Identities=18%  Similarity=0.517  Sum_probs=11.7

Q ss_pred             CCCEEEeecCCCcccCc
Q 017543          317 NIEEMFLNGTAIEELPS  333 (369)
Q Consensus       317 ~L~~L~Ls~n~l~~LP~  333 (369)
                      +|+.|++++|++++||+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            46677777777777765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=85.79  E-value=0.24  Score=47.76  Aligned_cols=81  Identities=23%  Similarity=0.288  Sum_probs=44.4

Q ss_pred             cceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc----CCC-CCCCCCCCEEEeecCCCc-----ccC
Q 017543          269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLNGTAIE-----ELP  332 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~----lP~-i~~L~~L~~L~Ls~n~l~-----~LP  332 (369)
                      .+.|..+.++.|. +..     +-..+ .+++|++|||.+|..-..    +-. ++.+++|+.|++++|.++     .+-
T Consensus       184 ~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~  262 (382)
T KOG1909|consen  184 HPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV  262 (382)
T ss_pred             ccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence            3455666666552 221     11223 567777777777543221    222 556667777777777665     222


Q ss_pred             ccc-cCCCCCcEEecccCC
Q 017543          333 SSI-ECLYKLLHLDLEDCK  350 (369)
Q Consensus       333 ~~i-~~L~~L~~L~Ls~n~  350 (369)
                      ..+ ...++|+.|.+.+|.
T Consensus       263 ~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  263 DALKESAPSLEVLELAGNE  281 (382)
T ss_pred             HHHhccCCCCceeccCcch
Confidence            233 235677777777765

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=82.75  E-value=2.7  Score=35.43  Aligned_cols=61  Identities=18%  Similarity=0.253  Sum_probs=46.8

Q ss_pred             CeeecCCCcccc-CchHHHHHHHHhhC-CcceEe---c----cCcchhHHHHHHHHHcceeeEEeccCCc
Q 017543          119 GVPTAIPSEDTR-DNFTSHLYSALSQK-SIETFI---N----RGDEISQSLVDAIEASAISLIIFSEGYA  179 (369)
Q Consensus       119 dvFis~~~~d~r-~~F~~~L~~aL~~~-gi~~~~---~----~G~~i~~~l~~~ie~S~i~ivv~S~~y~  179 (369)
                      .|||+|..+.-. ..-|-.|...|+.. |+.+.+   .    .+.....=+.+.++++...|||.|+.+.
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~~   71 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGYK   71 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccchh
Confidence            489999875433 24567788889999 999999   1    2556666788889999999999997643

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=82.37  E-value=0.94  Score=26.60  Aligned_cols=17  Identities=29%  Similarity=0.485  Sum_probs=11.1

Q ss_pred             CCCCCEEEeecCCCccc
Q 017543          315 AANIEEMFLNGTAIEEL  331 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~L  331 (369)
                      |++|+.|+|+.|+|+.+
T Consensus         1 L~~L~~L~L~~NkI~~I   17 (26)
T smart00365        1 LTNLEELDLSQNKIKKI   17 (26)
T ss_pred             CCccCEEECCCCcccee
Confidence            35677777777776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		4e-19
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-16
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		2e-05

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 128 DTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           DTR NF S LY  L ++SI TF     +  G   S  L   IE S  ++++ SE YA+S 
Sbjct: 19  DTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASS 78
Query: 183 WFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTW 242
           W  D+LV I+  ++     V+P+FYGV+P  V+W TG   + F K   R  E+ EK+  W
Sbjct: 79  WCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKW 136
Query: 243 RNAL 246
           R AL
Sbjct: 137 RQAL 140

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 128 DTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASSR 182
           DTR+ FT  LY +L +  I TF +     +G EI  +L+ AI+ S I + I S GYA S+
Sbjct: 46  DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSK 105
Query: 183 WFFDKLVKILQCKRVYG-QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
           W   +L +I++ +     +I+LP+FY VDP+ V+  TG Y  +F K   +F  + + +Q 
Sbjct: 106 WCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQN 163
Query: 242 WRNALKE 248
           W++ALK+
Sbjct: 164 WKDALKK 170

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 66/157 (42%), Gaps = 32/157 (20%)
Query: 244 NALKEKIISACNIFTKTPNPSFS-------QHLNTLVVL---------------NLRDCK 281
           N L+E  I AC   T+ P P  S       Q L  L  L               NL++ K
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 282 SLKSL--------PAGIHLEFLKELDLSGCSKLKRLPDI-SSAANIEEMFLNGTA-IEEL 331
           SLK          PA  HL  L+ELDL GC+ L+  P I    A ++ + L   + +  L
Sbjct: 210 SLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368
           P  I  L +L  LDL  C +L  LPS +      C I
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	8e-60
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	3e-56
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-46
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	9e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  190 bits (484), Expect = 8e-60
 Identities = 49/135 (36%), Positives = 68/135 (50%), Gaps = 11/135 (8%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASS 181
            DTR NF S LY  L ++SI TF        G   S  L   IE S  ++++ SE YA+S
Sbjct: 18  HDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAAS 77

Query: 182 RWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQT 241
            W  D+LV I+  ++     V+P+FYGV+P  V+W TG   + F K   R   + EK+  
Sbjct: 78  SWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE--DPEKVLK 135

Query: 242 WRNALKEKIISACNI 256
           WR AL         +
Sbjct: 136 WRQALTN----FAQL 146

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  182 bits (463), Expect = 3e-56
 Identities = 48/136 (35%), Positives = 78/136 (57%), Gaps = 12/136 (8%)

Query: 127 EDTRDNFTSHLYSALSQKSIETFIN-----RGDEISQSLVDAIEASAISLIIFSEGYASS 181
            DTR+ FT  LY +L +  I TF +     +G EI  +L+ AI+ S I + I S GYA S
Sbjct: 45  PDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADS 104

Query: 182 RWFFDKLVKILQCKRVYG-QIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQ 240
           +W   +L +I++ +     +I+LP+FY VDP+ V+  TG Y  +F K   +F  + + +Q
Sbjct: 105 KWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQ 162

Query: 241 TWRNALKEKIISACNI 256
            W++ALK+      ++
Sbjct: 163 NWKDALKK----VGDL 174

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  153 bits (389), Expect = 6e-46
 Identities = 20/126 (15%), Positives = 47/126 (37%), Gaps = 8/126 (6%)

Query: 126 SEDTRDNFTSHLYSALSQKSIETF-----INRGDEISQSLVDAIEASAISLIIFSEGYAS 180
            ED + +F   L   L     E +     +  GD + +S+   + +S   +++ S  +  
Sbjct: 29  WED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFK 87

Query: 181 SRWFFDKLVKILQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQ 240
             W   +L  + Q +      +LP+++ V    V   + +  D           + +++ 
Sbjct: 88  KEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTSTK--SVDEIV 145

Query: 241 TWRNAL 246
               A+
Sbjct: 146 ADLMAI 151

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.7 bits (218), Expect = 1e-19
 Identities = 28/116 (24%), Positives = 40/116 (34%), Gaps = 4/116 (3%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS 304
             +           T +          V L LR    L   P     L  L+ + +    
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA- 114

Query: 305 KLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
            L  LPD +   A +E + L    +  LP+SI  L +L  L +  C  L  LP  L
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPL 170

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.9 bits (216), Expect = 2e-19
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 4/104 (3%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFL-N 324
           +L  L  L +R+   L +L   I HL  L+ELDL GC+ L+  P      A ++ + L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368
            + +  LP  I  L +L  LDL  C +L  LPS +      C I
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 5e-16
 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI----------HLEFLKELDLSGCSKLKRLPD-ISSAA 316
            LN L  L++R C  L  LP  +           L  L+ L L   + ++ LP  I++  
Sbjct: 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQ 206

Query: 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
           N++ + +  + +  L  +I  L KL  LDL  C +L++ P        
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 8e-14
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNG 325
           HL  L  L+LR C +L++ P        LK L L  CS L  LP  I     +E++ L G
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRG 286

Query: 326 -TAIEELPSSIECLYKLLHLDLEDCKS---LKSLPSGL 359
              +  LPS I  L     + +         +  P   
Sbjct: 287 CVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 14/103 (13%), Positives = 30/103 (29%), Gaps = 7/103 (6%)

Query: 265 FSQHLNTLVVLNLRDCKSLKSLPAGIH-LEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
              H +    L  +   +L+     +   +     D +      R  + +   N +    
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN---NPQIETR 63

Query: 324 NGTAIEELPSSIECLY--KLLHLDLEDCKSLKSLPSGLFLCRN 364
            G A++     +E       + L+L     L   P   F   +
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSH 105

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-IS 313
           N          +   +TL  LNL+    +  +   +    LK LDLS   KL  +     
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQ 211

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED----CKSLKSL 355
           SAA +  + L    +  +  ++     L H DL      C +L+  
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD 311
           N  T   +       + +  L+L+  + + ++         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEGC-RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
               A ++ + L+   +  +    +    +  + L + K L  +   L   +N
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQN 238

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 13/112 (11%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANI 318
               Q+ N   +  + D   LK   A +      +KELDLSG   L ++    ++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-----LFLCRNK 365
           E + L+   + E    +E L  L  LDL +   ++ L  G     L    N 
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
           N  ++            L +LNL     L        L  L+ LDL+       + ++  
Sbjct: 44  NPLSQISAADL-APFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN----YVQELLV 97

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             +IE +      I  +  S        ++ L + K +  L     
Sbjct: 98  GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDE 140

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 7/110 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-IS 313
           N          +   +TL  LNL+    +  +   +    LK LDLS   KL  +     
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQ 211

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED----CKSLKSLPSGL 359
           SAA +  + L    +  +  ++     L H DL      C +L+   S  
Sbjct: 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 14/113 (12%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD 311
           N  T   +       + +  L+L+  + + ++         + L+ L+L     +  +  
Sbjct: 130 NKITMLRDLDEGC-RSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186

Query: 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
               A ++ + L+   +  +    +    +  + L + K L  +   L   +N
Sbjct: 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQN 238

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 13/109 (11%)

Query: 266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM 321
            Q+ N   +  + D   LK   A +      +KELDLSG   L ++    ++    +E +
Sbjct: 6   KQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELL 63

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG-----LFLCRNK 365
            L+   + E    +E L  L  LDL +   ++ L  G     L    N 
Sbjct: 64  NLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNN 110

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 9/106 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
           N  ++            L +LNL     L        L  L+ LDL+       + ++  
Sbjct: 44  NPLSQISAADL-APFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN----YVQELLV 97

Query: 315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             +IE +      I  +  S        ++ L + K +  L     
Sbjct: 98  GPSIETLHAANNNISRVSCSR--GQGKKNIYLANNK-ITMLRDLDE 140

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 7/105 (6%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPDISSAANIE 319
                    + +  +     L+  PA      +  L  LD     K++ L    +   + 
Sbjct: 541 ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLT 598

Query: 320 EMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLFLCR 363
           ++ L+   IEE+P        ++  L     K LK +P+      
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 16/110 (14%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDIS 313
               +    S+S  L  L  + L +C ++  LP  +  L  L+ L+++            
Sbjct: 477 AKQYENEELSWSN-LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN---------- 525

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR 363
                            L    +   K+    +     L+  P+   L +
Sbjct: 526 ---RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQK 571

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 13/118 (11%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCK------SLKSLPAGI-HLEFLKELDLSGCSKL 306
            +   + P     +  +    ++L+D +       +  +   I  L  L+ +  +     
Sbjct: 405 QDAINRNPEMKPIKKDS---RISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PF 460

Query: 307 KRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
                     +    +      E    S   L  L  ++L +C ++  LP  L+    
Sbjct: 461 TYDNIAVDWEDANSDYAKQY--ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 21/128 (16%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---------HLEFLKELDLSGCSK 305
           N   K P   F+   + +  + L +   + S+P            +   L  +DL    K
Sbjct: 683 NEIQKFPTELFA-TGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-K 739

Query: 306 LKRLPD---ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL------KSLP 356
           L  L D    ++   +  M ++       P+      +L    +   +        +  P
Sbjct: 740 LTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 357 SGLFLCRN 364
           +G+  C +
Sbjct: 800 TGITTCPS 807

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 14/112 (12%)

Query: 260 TPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH---LEFLKELDLSGCSKLKRLPD-ISSA 315
            P     ++   L  ++LR  K L SL        L +L  +D+S        P    ++
Sbjct: 718 KPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNS 775

Query: 316 ANIEEMFLNGTAI-------EELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           + ++   +             + P+ I     L+ L +     ++ +   L 
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKLT 826

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 13/112 (11%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN-- 324
           +   +  L+L    +   +P  I  L  LK L             +     +        
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEER 379

Query: 325 --------GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI 368
                        +    +     LL   +     +K +     +     +I
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLS-DLLQDAINRNPEMKPIKKDSRISLKDTQI 430

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 3e-10
 Identities = 18/111 (16%), Positives = 45/111 (40%), Gaps = 6/111 (5%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
                    +FS     L  + +     L+ + A +  +L  L E+ +   + L  +   
Sbjct: 40  TKLRVIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98

Query: 312 -ISSAANIEEMFLNGTAIEELPSSIEC-LYKLLHLDLEDCKSLKSLPSGLF 360
              +  N++ + ++ T I+ LP   +    + + LD++D  ++ ++    F
Sbjct: 99  AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 7/121 (5%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG--IHLEFLKELDLSG 302
            L E  I   N        +F Q+L  L  L + +   +K LP    IH      LD+  
Sbjct: 80  KLHEIRIEKANNLLYINPEAF-QNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQD 137

Query: 303 CSKLKRLPDISSA---ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
              +  +   S          ++LN   I+E+ +S     +L  L+L D  +L+ LP+ +
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 360 F 360
           F
Sbjct: 198 F 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 4e-10
 Identities = 37/111 (33%), Positives = 59/111 (53%), Gaps = 9/111 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N  +  P+ +F   L  L +L L D   L++LPAGI   L+ L+ L ++   KL+ LP  
Sbjct: 47  NKLSSLPSKAF-HRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIG 103

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                 N+ E+ L+   ++ LP  + + L KL +L L   + L+SLP G+F
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVF 153

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           DC  K L ++P+ I  +  K+LDL   +KL  LP         +  ++LN   ++ LP+ 
Sbjct: 22  DCSSKKLTAIPSNIPAD-TKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           I + L  L  L + D K L++LP G+F
Sbjct: 80  IFKELKNLETLWVTDNK-LQALPIGVF 105

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 8/111 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        SF  HL  L +L L     ++++  G    L  L  L+L    +L  +P+ 
Sbjct: 74  NQIQIIKVNSFK-HLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN-RLTTIPNG 130

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                + ++E++L    IE +PS     +  L  LDL + K L  +  G F
Sbjct: 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 55.9 bits (135), Expect = 8e-09
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 7/113 (6%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           +      +     +F + L+ L  LNL  C  L+ +P    L  L ELDLSG   L  + 
Sbjct: 167 LGELKRLSYISEGAF-EGLSNLRYLNLAMCN-LREIPNLTPLIKLDELDLSGN-HLSAIR 223

Query: 311 D--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLF 360
                   +++++++  + I+ +   + + L  L+ ++L     L  LP  LF
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLF 275

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 9/95 (9%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P      + L ++++ +   LK LP       L+ +      +L+ LP++ +   +  ++
Sbjct: 147 PELQN-SSFLKIIDVDNNS-LKKLPDLPPS--LEFIAAGNN-QLEELPELQNLPFLTAIY 201

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
            +  ++++LP        L  +   +   L+ LP 
Sbjct: 202 ADNNSLKKLPDL---PLSLESIVAGNNI-LEELPE 232

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P     L  L  +   +   LK LP       L+ +       L+ LP++ +   +  ++
Sbjct: 189 PELQN-LPFLTAIYADNNS-LKKLPDLPLS--LESIVAGNN-ILEELPELQNLPFLTTIY 243

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
            +   ++ LP     L  L   D      L  LP   
Sbjct: 244 ADNNLLKTLPDLPPSLEALNVRDN----YLTDLPELP 276

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
           P   Q L +L+V N      L  LP       L+ L +S   +L++LP++ +++ ++ + 
Sbjct: 107 PELPQSLKSLLVDNNNLKA-LSDLPPL-----LEYLGVSNN-QLEKLPELQNSSFLKIID 159

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
           ++  ++++LP        L  +   + + L+ LP 
Sbjct: 160 VDNNSLKKLPDLPP---SLEFIAAGNNQ-LEELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 22/130 (16%), Positives = 45/130 (34%), Gaps = 20/130 (15%)

Query: 244 NALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH------------ 291
           N   ++ +   +  T+ P  +   ++ +         +  ++ P G              
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAE--NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 292 --LEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC 349
                  EL+L+    L  LP+     ++E +  +  ++ ELP   + L  LL  +    
Sbjct: 68  CLDRQAHELELNNL-GLSSLPE--LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 124

Query: 350 KSLKSLPSGL 359
             L  LP  L
Sbjct: 125 A-LSDLPPLL 133

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 7/120 (5%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-IHLEFLKELDLSGCS 304
           L +  +S+  +  K           +L  L+L     + ++ +  + LE L+ LD     
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS- 111

Query: 305 KLKRLPDIS---SAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
            LK++ + S   S  N+  + ++ T      + I   L  L  L +      ++    +F
Sbjct: 112 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 171

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           IS  +      N  F   L++L VL +      ++    I   L  L  LDLS C +L++
Sbjct: 133 ISHTHT-RVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 189

Query: 309 LPDISSA--ANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           L   +    ++++ + ++      L +   +CL  L  LD      + +      
Sbjct: 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 271 TLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSA----ANIEEMFLN 324
           +   L L   K L+SLP G+   L  L +L LS    L      S +     +++ + L+
Sbjct: 29  SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS-GLF 360
              +  + S+   L +L HLD +    LK +    +F
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVF 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 46/311 (14%), Positives = 91/311 (29%), Gaps = 95/311 (30%)

Query: 109 HSHAHFD--------SYEGV-----PTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDE 155
           H H H D         Y+ +        + + D +D       S LS++ I+  I   D 
Sbjct: 2   HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSILSKEEIDHIIMSKDA 60

Query: 156 ISQS--LVDAIEASAISLI-IFSEG-----YASSRWFFDKLVKILQCKRVYGQIVLPVFY 207
           +S +  L   + +    ++  F E      Y   ++    +    + +            
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKT--EQR------------ 103

Query: 208 GVDPAPVKWPTGSYGDSFLKLEERFKENS----EKLQTWRNALKEKIISACNI------- 256
              P+ +        D      + F + +    +     R AL E +  A N+       
Sbjct: 104 --QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLG 160

Query: 257 FTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH-------------LEFLKEL----D 299
             KT           + +      K    +   I              LE L++L    D
Sbjct: 161 SGKT----------WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 300 LSGCSKLKRLPDISSAANIEEMFLNGT-AIEELPSSIECLYKLLHLD-LEDCKSLKSLPS 357
            +  S+     +I    +  +  L      +   +       LL L  +++ K+  +   
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------LLVLLNVQNAKAWNA--- 261

Query: 358 GLFLCRNKCRI 368
             F     C+I
Sbjct: 262 --FN--LSCKI 268

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS 304
           +L    +            +F + L  L  LNL  C  +K +P    L  L+EL++SG +
Sbjct: 172 SLMRLDLGELKKLEYISEGAF-EGLFNLKYLNLGMCN-IKDMPNLTPLVGLEELEMSG-N 228

Query: 305 KLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLF 360
               +        ++++++++  + +  +   + + L  L+ L+L     L SLP  LF
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLF 286

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 8/111 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        +F  HL+ L VL L     ++ +  G    L  L  L+L     L  +P  
Sbjct: 85  NNIQMIQADTFR-HLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN-WLTVIPSG 141

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                + + E++L    IE +PS     +  L+ LDL + K L+ +  G F
Sbjct: 142 AFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 9/115 (7%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           +S  N+       + +  L  L  L L     L  + +     +  L+ LDLS    L  
Sbjct: 46  LSHNNLSRLRAEWTPT-RLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHT 102

Query: 309 LPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           L +   S    +E + L    I  +  +  E + +L  L L   + +   P  L 
Sbjct: 103 LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELI 156

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.1 bits (130), Expect = 4e-08
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAI 328
            N   VLN+ +   L +LP  +    +  L +   + L  LP       +  + ++G  +
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCL-PAHITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQL 93

Query: 329 EELPSSIECLYKLLHLDLEDCKSLKSLPSGL 359
             LP     L +L          L +LPSGL
Sbjct: 94  TSLPVLPPGLLELSIFSNPLT-HLPALPSGL 123

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 6e-06
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 7/93 (7%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFL 323
           S     + L  L +   + L SLP       LKEL +SG  +L  LP     + +  + +
Sbjct: 215 SLPALPSGLKELIVSGNR-LTSLPVLPSE--LKELMVSGN-RLTSLPM--LPSGLLSLSV 268

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
               +  LP S+  L     ++LE    L    
Sbjct: 269 YRNQLTRLPESLIHLSSETTVNLEGNP-LSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 264 SFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF 322
           S     + L  L +   + L SLP       L  L +    +L RLP+ +   ++   + 
Sbjct: 235 SLPVLPSELKELMVSGNR-LTSLPMLP--SGLLSLSVYRN-QLTRLPESLIHLSSETTVN 290

Query: 323 LNGTAIEELPSSIECLYKLLHLDL 346
           L G  + E                
Sbjct: 291 LEGNPLSERTLQALREITSAPGYS 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 4e-08
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSG 302
            L+E  I A ++       S  + +  +  L L   +    L          ++ L+L  
Sbjct: 175 FLEELEIDASDL-QSYEPKSL-KSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRD 231

Query: 303 ----CSKLKRLPDISSAA-----NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLK 353
                     L    + +         + +   ++ ++   +  +  LL L+    + LK
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LK 290

Query: 354 SLPSGLF 360
           S+P G+F
Sbjct: 291 SVPDGIF 297

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 10/115 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N +      S   HL  L +L + +  +   +       L FL+EL++     L+     
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPK 192

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLED----CKSLKSLPSGLF 360
            + S  N+  + L+      L     +    +  L+L D          L +G  
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N  T   N    Q    L  L L     + ++       L  L+ LDLS    L  L   
Sbjct: 62  NRITYISNSDL-QRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI--ECLYKLLHLDLEDCKSLKSLPSGLF 360
                +++  + L G   + L  +     L KL  L + +  +   +    F
Sbjct: 119 WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDF 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
               ++   ++ T          L ++  L +   K + S+    +L  L+ L+L+G  +
Sbjct: 24  GIRAVLQKASV-TDVVTQE---ELESITKLVVAGEK-VASIQGIEYLTNLEYLNLNGN-Q 77

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
           +  +  +S+   +  +++    I ++  +++ L  L  L L +   +  +  
Sbjct: 78  ITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 10/110 (9%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMF 322
            +    L  L  L L +   +  +    +L  +  L+L     L  L  +S+   +  + 
Sbjct: 104 SALQN-LTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLT 161

Query: 323 LNGTAIEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--GLFLCRNK 365
           +  + ++++   I  L  L  L L   +      L SL S        N+
Sbjct: 162 VTESKVKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ 210

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
            +L+ L  L +   + +  + A   L  LK L++    ++  +  +++ + +  +FLN  
Sbjct: 240 ANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNN 297

Query: 327 AIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS 357
            +       I  L  L  L L     +  +  
Sbjct: 298 QLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 14/93 (15%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
           ++  L  L + + K +  L    +L  L  L++    ++  +  +     ++ + +    
Sbjct: 219 NMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ 276

Query: 328 IEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           I ++ S +  L +L  L L + + L +    + 
Sbjct: 277 ISDI-SVLNNLSQLNSLFLNNNQ-LGNEDMEVI 307

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 16/128 (12%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
             + ++   N+ T T + +    L+ +  L       +KS+    +L  L +++ S   +
Sbjct: 26  KMKTVLGKTNV-TDTVSQT---DLDQVTTLQADRLG-IKSIDGVEYLNNLTQINFSNN-Q 79

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK--------SLKSLPS 357
           L  +  + +   + ++ +N   I ++   +  L  L  L L + +        +L +L  
Sbjct: 80  LTDITPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 138

Query: 358 GLFLCRNK 365
            L L  N 
Sbjct: 139 -LELSSNT 145

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 10/105 (9%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
            L  L  L+L   + LK +     L  L +LDL+   ++  L  +S    + E+ L    
Sbjct: 219 ILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ 276

Query: 328 IEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--GLFLCRNK 365
           I  + S +  L  L +L+L + +      + +L +   L L  N 
Sbjct: 277 ISNI-SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L  L  L L + + L+ +    +L+ L  L L     +  +  +SS   ++ +F    
Sbjct: 284 AGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNN 341

Query: 327 AIEELPSSIECLYKLLHLDLEDCK--------SLKSLPSGLFLCRNKC 366
            + ++  S+  L  +  L     +        +L  +   L L     
Sbjct: 342 KVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQ-LGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L  L  L L   + + ++     L  L  L+L+   +L+ +  IS+  N+  + L   
Sbjct: 262 SGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319

Query: 327 AIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
            I ++ S +  L KL  L   + K +  + S
Sbjct: 320 NISDI-SPVSSLTKLQRLFFYNNK-VSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 262 NPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           + S    L  L  L   + + +  +     L  L EL L+G  +LK +  ++S  N+ ++
Sbjct: 191 DISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDL 248

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--GLFLCRNK 365
            L    I  L   +  L KL  L L   +      L  L +   L L  N+
Sbjct: 249 DLANNQISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ 298

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 26/116 (22%), Positives = 42/116 (36%), Gaps = 16/116 (13%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGI----HLEFLKELDLSGCSKLKRLPD-ISSA 315
            N +      +L  L L     L+S+         L+ L  LD+S       +PD     
Sbjct: 352 KNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDSCQWP 409

Query: 316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSG------LFLCRNK 365
             +  + L+ T I  + + I     L  LD+ +   L S          L++ RNK
Sbjct: 410 EKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNN-LDSFSLFLPRLQELYISRNK 462

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEF-----LKELDLSGCSKLKRL 309
           +     P     QHL +L  L+L +   +                L+ L LS    L+ +
Sbjct: 320 SKVFLVPCSFS-QHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQN-HLRSM 376

Query: 310 PDISSA----ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
                      N+  + ++      +P S +   K+  L+L     ++ + + + 
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP 430

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N +      S   +L  L  L + + ++   +       L  L EL++     L+     
Sbjct: 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQ 166

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
            + S  +I  + L+ +    L     + L  + +L+L D  +L        
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPL 216

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 8e-08
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 6/108 (5%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-IS 313
           N+       +       L  LNL   + L  L     L  L  LDLS   +L+ LP    
Sbjct: 41  NLLYTFSLATLM-PYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHN-QLQSLPLLGQ 97

Query: 314 SAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           +   +  + ++   +  LP      L +L  L L+  + LK+LP GL 
Sbjct: 98  TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLL 144

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 27/107 (25%)

Query: 279 DC--KSLKSLPAGI-----------------------HLEFLKELDLSGCSKLKRLPDIS 313
           +C  ++L +LP  +                           L +L+L    +L +L    
Sbjct: 16  NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDG 74

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           +   +  + L+   ++ LP   + L  L  LD+   + L SLP G  
Sbjct: 75  TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGAL 120

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 252 SACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIH-LEFLKELDLSGCSKLKRLP 310
           S   +  K           +L  L+L     + ++ +    LE L+ LD      LK++ 
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMS 412

Query: 311 DIS---SAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           + S   S  N+  + ++ T      + I   L  L  L +      ++    +F
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSA----ANIEEM 321
           +  L +L  L     K   +  + + L  L+ LDLS    L      S +     +++ +
Sbjct: 321 TLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYL 378

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLC 362
            L+   +  + S+   L +L HLD +    LK +       
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFL 418

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 14/116 (12%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N        +F   L++L  L   +   L SL      HL+ LKEL+++    ++     
Sbjct: 86  NPIQSLALGAF-SGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHN-LIQSFKLP 142

Query: 312 --ISSAANIEEMFLNGTAIEELP-SSIECLYKL----LHLDLEDCKSLKSLPSGLF 360
              S+  N+E + L+   I+ +  + +  L+++    L LDL     +  +  G F
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF 197

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 8/96 (8%)

Query: 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG 325
            +   L+L     L+ L +        L+ LDLS C +++ + D    S +++  + L G
Sbjct: 28  FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85

Query: 326 TAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
             I+ L       L  L  L   +   L SL +   
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPI 120

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           IS  +   +         L++L VL +      ++    I   L  L  LDLS C +L++
Sbjct: 428 ISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQ 484

Query: 309 LPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLED 348
           L     +S ++++ + +    ++ +P  I + L  L  + L  
Sbjct: 485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 17/122 (13%), Positives = 44/122 (36%), Gaps = 14/122 (11%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGC---------S 304
               KT +  +   L  L  + + +C +L  LP  +  L  ++ ++++            
Sbjct: 235 AQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGLFLC 362
             + L D      I+ +++    ++     +S++ + KL  L+    + L+         
Sbjct: 294 DWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFGSE 352

Query: 363 RN 364
             
Sbjct: 353 IK 354

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 21/128 (16%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---------HLEFLKELDLSGCSK 305
           N  +K P   FS   + L  +NL     L  +P            +   L  +DL    K
Sbjct: 443 NQISKFPKELFS-TGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-K 499

Query: 306 LKRLPD---ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSL------KSLP 356
           L +L D    ++   +  + L+  +  + P+       L    + + +        +  P
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 357 SGLFLCRN 364
            G+ LC +
Sbjct: 560 EGITLCPS 567

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 15/113 (13%)

Query: 259 KTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD-ISS 314
           K  N +F      L  ++LR  K L  L        L +L  +DLS      + P    +
Sbjct: 478 KDENENFKN-TYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLN 534

Query: 315 AANIEEMFLNGTAI-------EELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           ++ ++   +             E P  I     L  L +     ++ +   + 
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 18/119 (15%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N       P+F      L  LNL   + +  +PA      E ++ L  +   KLK +P+ 
Sbjct: 340 NQLEGKL-PAFGS-EIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYIPNI 395

Query: 312 --ISSAANIEEMFLNG--------TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
               S + +  +  +            + L  +      +  ++L + + +   P  LF
Sbjct: 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELF 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 5/111 (4%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDIS 313
           +   +      S+       +       +  +   +  L  L++  +        + +  
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNS-PF--VAENI 223

Query: 314 SAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
             A   E        +      + L  L  +++ +C +L  LP+ L     
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 30/153 (19%), Positives = 54/153 (35%), Gaps = 15/153 (9%)

Query: 225 FLKLEERFKENSEKLQTWRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK 284
            L  E+   +    L+         +    + F    +    ++ +  V L+L     L 
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRV-LHLAHKD-LT 454

Query: 285 SLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH 343
            L     L  +  LDLS   +L+ LP  +++   +E +  +  A+E +   +  L +L  
Sbjct: 455 VLCHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQE 512

Query: 344 LDL--------EDCKSLKSLPS--GLFLCRNKC 366
           L L           + L S P    L L  N  
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           +   +    S    L  L+ L++      K    GI   L  L  L ++G S        
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 312 -ISSAANIEEMFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             ++  N+  + L+   +E++     + L++L  L++     L  L S  +
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN-LLFLDSSHY 517

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 12/115 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC--SKLKRLP 310
           N        SF   L +L  L   +   L SL +     L  LK+L+++       K   
Sbjct: 90  NPIQSFSPGSF-SGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPA 147

Query: 311 DISSAANIEEMFLNGTAIEELPSSI-----ECLYKLLHLDLEDCKSLKSLPSGLF 360
             S+  N+  + L+   I+ +  +      E     L LD+     +  +    F
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAF 201

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 8/96 (8%)

Query: 270 NTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG 325
           ++   ++L     LK L +    +   L+ LDLS C +++ + D       ++  + L G
Sbjct: 32  SSTKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTG 89

Query: 326 TAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             I+   P S   L  L +L   +   L SL S   
Sbjct: 90  NPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDIS----SAANIEEM 321
           +  L  L  L L   K        + L  L  LDLS    L      S       ++  +
Sbjct: 324 TLDLPFLKSLTLTMNK-GSISFKKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
            L+      + ++   L +L HLD +    LK +  
Sbjct: 382 DLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTE 416

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
                  + +F + L  L  LNL     L++L AG+   L  L  L L+  ++L  LP  
Sbjct: 45  TGLATLSDATF-RGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLG 101

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                  +++++L G  ++ LPS + + L KL  L L +   L+S+P+G F
Sbjct: 102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAF 151

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 50.1 bits (120), Expect = 5e-07
 Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRL-PD 311
              T  P  + S HL+ L+VL LR    + ++       L  LK L++S    L  + P+
Sbjct: 162 CNLTSIPTEALS-HLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219

Query: 312 ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLF 360
                N+  + +    +  +P  ++  L  L  L+L     + ++   + 
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSML 268

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--I 312
           N       P   +    L +L L+    L      ++   L E+DLS   +L+++     
Sbjct: 215 NSINVVRGPVNVE----LTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 268

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
                +E ++++   +  L    + +  L  LDL     L  +         
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 260 TPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-DISSAA 316
           T       +   LV ++L   + L+ +       ++ L+ L +S  ++L  L        
Sbjct: 239 TDTAWL-LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIP 295

Query: 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            ++ + L+   +  +  +     +L +L L+    + +L     
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  +  P   F  +   L  L++ +   L+ +          L+ L LS   +L  +   
Sbjct: 127 NDLSSLPRGIFH-NTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDL- 182

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           S   ++    ++   +  L         +  LD      +  +   + 
Sbjct: 183 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNS-INVVRGPVN 225

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 255 NIFTKTP----NPSFSQHLNTLVVLNLRD-CKSLKSLPAGIHLEFLKELDLSGCSKLKRL 309
           N+  + P      S  Q+      +++    + +      I L   K +       +++L
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 60

Query: 310 PD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           P   + S   +E + LN   IEE+ +      + +  L +     ++ LP  +F
Sbjct: 61  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 113

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 7e-07
 Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 7/104 (6%)

Query: 260 TPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-DISSAA 316
           T       +   LV ++L   + L+ +       ++ L+ L +S  ++L  L        
Sbjct: 245 TDTAWL-LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIP 301

Query: 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            ++ + L+   +  +  +     +L +L L+    + +L     
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTH 344

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 9/108 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--I 312
           N       P   +    L +L L+    L      ++   L E+DLS   +L+++     
Sbjct: 221 NSINVVRGPVNVE----LTILKLQHNN-LTDTAWLLNYPGLVEVDLSYN-ELEKIMYHPF 274

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
                +E ++++   +  L    + +  L  LDL     L  +     
Sbjct: 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQP 321

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 11/108 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N  +  P   F  +   L  L++ +   L+ +          L+ L LS   +L  +   
Sbjct: 133 NDLSSLPRGIF-HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN-RLTHVDL- 188

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           S   ++    ++   +  L         +  LD      +  +   + 
Sbjct: 189 SLIPSLFHANVSYNLLSTLAI----PIAVEELDASHNS-INVVRGPVN 231

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 255 NIFTKTP----NPSFSQHLNTLVVLNLRD-CKSLKSLPAGIHLEFLKELDLSGCSKLKRL 309
           N+  + P      S  Q+      +++    + +      I L   K +       +++L
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKL 66

Query: 310 PD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           P   + S   +E + LN   IEE+ +      + +  L +     ++ LP  +F
Sbjct: 67  PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF 119

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 25/123 (20%), Positives = 47/123 (38%), Gaps = 16/123 (13%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           +    +     +PS  Q L  L +L+L +   + ++   +   LE L+ LDL     L R
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLAR 518

Query: 309 LPDISSAANIEEMFLNGTAIEEL-----------PSSIECLYKLLHLDLEDCKSLKSLPS 357
           L   ++           + +  L               + L++L  +DL     L +LP+
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPA 577

Query: 358 GLF 360
            +F
Sbjct: 578 SVF 580

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 11/113 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N  ++  + +F+     L  L+L     ++ +        + L  LDLS    L      
Sbjct: 83  NELSQLSDKTFA-FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLG 139

Query: 312 -ISSAANIEEMFLNGTAIEELPS---SIECLYKLLHLDLEDCKSLKSLPSGLF 360
                 N++E+ L+   I+ L S    I     L  L+L   + +K    G F
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCF 191

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 12/115 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           N   +     F   +  L  L L + +      + L   +    ++ L LS    L    
Sbjct: 181 NQIKEFSPGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTS 238

Query: 311 DIS----SAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           + +       N+  + L+   +  +   S   L +L +  LE    ++ L S   
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL 292

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           ++ T T     S   + L +LNL   K +  + +     L  L+ LDL    ++ +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLN-EIGQELTG 423

Query: 312 --ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
                  NI E++L+     +L  +S   +  L  L L     LK++ S     + 
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQP 478

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLN 324
              + VLNL   + L+ LPA        L  LD+     + +L          ++ + L 
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQ 81

Query: 325 GTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLF 360
              + +L   +      L  L L     ++ + +  F
Sbjct: 82  HNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPF 117

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 20/123 (16%), Positives = 40/123 (32%), Gaps = 13/123 (10%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK---SLPAGIHLEFLKELDLSG 302
            +                  +  + +L +    D        ++  G+    ++ ++L  
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 303 CSKLKRLPDISSAA-----NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS 357
                   +ISS        ++E+ L  T + ELPS +  L  L  L L   K  ++L  
Sbjct: 264 H----YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQ 318

Query: 358 GLF 360
              
Sbjct: 319 ISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 26/105 (24%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANI 318
           PS    L+TL  L L   K  ++L      +   L  L + G +K   L    + +  N+
Sbjct: 294 PSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352

Query: 319 EEMFLNGTAIEELPSSIECLY---KLLHLDLEDCKSLKSLPSGLF 360
            E+ L+   IE        L     L  L+L   +   SL +  F
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAF 396

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 10/115 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N F      S   +  +L  L+++       L  G   +LE L+ELDLS    ++     
Sbjct: 311 NKFENLCQISA-SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCC 368

Query: 313 SSA----ANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLC 362
           +      ++++ + L+      L + + +   +L  LDL   + LK   +     
Sbjct: 369 NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQ 422

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 9/112 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGIHLEFLKELDLSGCSKLKRLP 310
           ++   +    F   L  L  LNL+       +++   +   L  L+ L LS C  L  + 
Sbjct: 435 SLLDISSEQLF-DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID 492

Query: 311 D--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
               +S   +  + L+   +           K ++L+L     +  +   L 
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNLAS-NHISIILPSLL 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 9/114 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-- 310
              +         +  TL  L L     + S+        E LK LD      +  L   
Sbjct: 115 TGISSIDFIPL-HNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKE 171

Query: 311 DISSAANIEEMFL--NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLC 362
           D+SS      + L  NG  I  +            L+    ++L  +  GL   
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNS 225

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 8/97 (8%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLN 324
            N+   L       L ++       L  L  LDL+ C ++  + +    S   ++ + L 
Sbjct: 32  PNSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLT 89

Query: 325 GTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
              +  +  +       L HL       + S+     
Sbjct: 90  ANPLIFMAETALSGPKALKHLFFIQTG-ISSIDFIPL 125

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
            L+ +  L+      + ++    +L  L  L+L    ++  L  + +   I E+ L+G  
Sbjct: 39  DLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP 96

Query: 328 IEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--GLFLCRNK 365
           ++ + S+I  L  +  LDL   +      L  L +   L+L  N+
Sbjct: 97  LKNV-SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQ 140

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 4e-06
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 14/127 (11%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSK 305
           + E I  +  I    P+ +F++     +  NL+  KS+        L  + ++  +    
Sbjct: 1   MGETITVSTPIKQIFPDDAFAE----TIKDNLKK-KSVTDAVTQNELNSIDQIIANNS-D 54

Query: 306 LKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--G 358
           +K +  I    N+ ++FLNG  + ++   +  L  L  L L++ K     SLK L     
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 359 LFLCRNK 365
           L L  N 
Sbjct: 114 LSLEHNG 120

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCS 304
           L+   I   ++   +        L +L +L++       S+   I  L  +  +DLS   
Sbjct: 90  LERLRIMGKDV--TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK 350
            +  +  + +   ++ + +    + +    IE   KL  L      
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 8/111 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N+  +    +F   L  L  L+L D   L+S+       L  L  L L  C  L+ L   
Sbjct: 66  NVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPG 123

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                A ++ ++L   A++ LP      L  L HL L     + S+P   F
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAF 173

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 39.6 bits (93), Expect = 8e-04
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
            C  + L+++P GI     + + L G +++  +P     +  N+  ++L+   +  + ++
Sbjct: 17  SCPQQGLQAVPVGI-PAASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLF 360
               L  L  LDL D   L+S+    F
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATF 101

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 30/110 (27%)

Query: 279 DC--KSLKSLPAGI-----------------------HLEFLKELDLSGCSKLKRLPD-- 311
            C   +   +P  +                           L+ LDLS C +++ + D  
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGA 71

Query: 312 ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
             S +++  + L G  I+ L       L  L  L   +   L SL +   
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPI 120

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 46.5 bits (110), Expect = 8e-06
 Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 255 NIFTKTPN--PSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDI 312
           N  + T     S         +      +++  L     +    EL L+    L  LPD 
Sbjct: 20  NTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRL-NLSSLPD- 76

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN 364
           +    I  + +   A+  LP        L +LD  D + L +LP      ++
Sbjct: 77  NLPPQITVLEITQNALISLPELPA---SLEYLDACDNR-LSTLPELPASLKH 124

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 10/93 (10%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF----L 323
             +L VL++R+ + L  LP       L+ LD+S    L+ LP       + EE       
Sbjct: 159 PTSLEVLSVRNNQ-LTFLPELPES--LEALDVSTN-LLESLPAVPVRNHHSEETEIFFRC 214

Query: 324 NGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
               I  +P +I  L     + LED   L S  
Sbjct: 215 RENRITHIPENILSLDPTCTIILEDNP-LSSRI 246

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAGIH------LEFLKELDLSGCSKLKRLPDISSAA 316
              +     +  L   D  SL SL +  +       E +  L+LS    L          
Sbjct: 393 FKVALMTKNMSSLETLDV-SLNSLNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLPP 450

Query: 317 NIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            ++ + L+   I  +P  +  L  L  L++     LKS+P G+F
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF 493

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFL 323
            L  L  L L     L+SLP G+   L  LKEL L   ++L+ LPD       N+  + L
Sbjct: 83  ELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNL 140

Query: 324 NGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
               ++ LP  + + L  L  LDL   + L+SLP G+F
Sbjct: 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVF 177

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 275 LNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSS 334
            NL+  KS+        L  + ++  +  S +K +  I    N+  + L G  + ++  +
Sbjct: 24  ANLKK-KSVTDAVTQNELNSIDQIIANN-SDIKSVQGIQYLPNVRYLALGGNKLHDIS-A 80

Query: 335 IECLYKLLHLDLEDCKSLKSLPSGLF 360
           ++ L  L +L L     L+SLP+G+F
Sbjct: 81  LKELTNLTYLILTG-NQLQSLPNGVF 105

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 27/108 (25%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N     PN  F   L +L  L L     L+SLP G+   L  L  L+LS  ++L+ LP  
Sbjct: 38  NSLKSLPNGVF-DELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLS-TNQLQSLP-- 92

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
                                  + L +L  L L   + L+SLP G+F
Sbjct: 93  -------------------NGVFDKLTQLKELALNTNQ-LQSLPDGVF 120

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%)

Query: 255 NIFTKTPNPSFS-QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD 311
           N   +    +     + +L  L++           G     + L  L++S    L     
Sbjct: 358 NQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF 416

Query: 312 ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
                 I+ + L+   I+ +P  +  L  L  L++   + LKS+P G+F
Sbjct: 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIF 464

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           ++F    +  +    + + + N       + +       +     LD S    L      
Sbjct: 286 DVFGFPQSYIYEI-FSNMNIKNF-TVSGTRMVHMLCPSKISPFLHLDFSNN-LLTDTVFE 342

Query: 312 -ISSAANIEEMFLNGTAIEELPSSIEC---LYKLLHLDLEDCKSLKSLPSGLF 360
                  +E + L    ++EL    E    +  L  LD+           G  
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC 395

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 268 HLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTA 327
                +  NL+  KS+        L  + ++  +    +K +  I    N+ ++FLNG  
Sbjct: 22  AFAETIKDNLKK-KSVTDAVTQNELNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNK 79

Query: 328 IEELPSSIECLYKLLHLDLEDCK-----SLKSLPS--GLFLCRNK 365
           + ++   +  L  L  L L++ K     SLK L     L L  N 
Sbjct: 80  LTDI-KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG 123

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC 303
           L    IS   + T  P         TL  L+L   K ++++          L  L L   
Sbjct: 174 LNYLRISEAKL-TGIPKDLPE----TLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHN 227

Query: 304 SKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            +++ + +  +S    + E+ L+   +  +P+ +  L  L  + L     +  +    F
Sbjct: 228 -QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDF 284

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/114 (21%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
           N   +    SFS  L  L  L +        +       L  L  L L   ++  +L   
Sbjct: 40  NSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETG 97

Query: 312 -ISSAANIEEMFLNGTAIEE--LPSSI-ECLYKLLHLDLEDCKSLKSL-PSGLF 360
             +  AN+E + L    ++   L  +  + L  L  L L D   +K + P+  F
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFF 150

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 255 NIFTKTPNPSFS-QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD 311
           +        +F+    +++  L+L     + SL + +   L+ LK L+L+   K+ ++ D
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIAD 307

Query: 312 --ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                  N++ + L+   + EL SS    L K+ ++DL+    +  +    F
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTF 358

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.0 bits (104), Expect = 7e-05
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDI 312
           N+  +  + +F   L  +  ++L+    +  +       LE L+ LDL        L  I
Sbjct: 324 NLLGELYSSNF-YGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDN----ALTTI 377

Query: 313 SSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR 363
               +I ++FL+G  +  LP           + L + + L++L    FL R
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINLT---ANLIHLSENR-LENLDILYFLLR 424

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 24/129 (18%)

Query: 246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC 303
           L+   + +          +F ++L  L +L+L   K +  L       L  L EL L  C
Sbjct: 50  LQLLELGSQYTPLTIDKEAF-RNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFC 107

Query: 304 SKLKRLPDISSAANIEEMFLNGTAIEEL------------PSSIECLYKLLHLDLEDCKS 351
                   +S A   +  F N  A+  L              S   L  L  +D    + 
Sbjct: 108 G-------LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ- 159

Query: 352 LKSLPSGLF 360
           +  +     
Sbjct: 160 IFLVCEHEL 168

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/114 (19%), Positives = 35/114 (30%), Gaps = 11/114 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCK----SLKSLPAGI--HLEFLKELDLSGCSKLKR 308
           N F+            +L  L L +          L   +   L  L+ L L+    L  
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNS 494

Query: 309 LPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           LP    S    +  + LN   +  L  +      L  LD+     L +    +F
Sbjct: 495 LPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRN-QLLAPNPDVF 546

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMF 322
           Q LNT   L L     ++++ A     LE L+ L+L        +      +  N+  + 
Sbjct: 21  QVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 323 LNGTAIEELPSSI-ECLYKLLHLDLEDCK-SLKSLPSGLF 360
           L  + I  L     + L+ L  L L  C  S   L  G F
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 14/116 (12%)

Query: 254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-- 311
            N     P  + +   N + +   R  ++L  L   + +  L+ L L+   +        
Sbjct: 390 GNKLVTLPKINLT--ANLIHLSENR-LENLDILYFLLRVPHLQILILNQN-RFSSCSGDQ 445

Query: 312 -ISSAANIEEMFLNGTAIEEL------PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             S   ++E++FL    ++            E L  L  L L     L SLP G+F
Sbjct: 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY-LNSLPPGVF 500

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 8/111 (7%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLP-- 310
                  N  F   L++L VL +      ++    I   L  L  LDLS C +L++L   
Sbjct: 431 THTRVAFNGIF-NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 488

Query: 311 DISSAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
             +S ++++ + ++      L     +CL  L  LD      + +      
Sbjct: 489 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL 538

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 7/115 (6%)

Query: 251 ISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRL 309
           +S   +  K           +L  L+L     + ++ +    LE L+ LD      LK++
Sbjct: 354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQM 411

Query: 310 PDIS---SAANIEEMFLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            + S   S  N+  + ++ T            L  L  L +      ++    +F
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGC--SKLKRLP 310
           N        +FS  L++L  L   +  +L SL      HL+ LKEL+++       K   
Sbjct: 86  NPIQSLALGAFS-GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 311 DISSAANIEEMFLNGTAIEEL-PSSIECLYKL----LHLDLEDCKSLKSLPSGLF 360
             S+  N+E + L+   I+ +  + +  L+++    L LDL     +  +  G F
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAF 197

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 10/110 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS 314
             F + P       L  L   +        +  + + L  L+ LDLS  + L      S 
Sbjct: 314 CKFGQFPTLKLK-SLKRLTFTSN----KGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQ 367

Query: 315 A----ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
           +     +++ + L+   +  + S+   L +L HLD +     +     +F
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 13/109 (11%)

Query: 269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAI 328
           +  LV L+       K          L+ L L     L  + ++     ++++ L+   I
Sbjct: 26  VRELV-LDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENRI 83

Query: 329 EELPSSI-ECLYKLLHLDL--------EDCKSLKSLPS--GLFLCRNKC 366
                 + E L  L HL+L           + LK L     L L   + 
Sbjct: 84  FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEV 132

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 11/111 (9%)

Query: 255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD- 311
              T  P         +L  L+L   K +  + A     L  L +L LS    +  + + 
Sbjct: 181 TNITTIPQGLPP----SLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNG 234

Query: 312 -ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFL 361
            +++  ++ E+ LN   + ++P  +     +  + L +  ++ ++ S  F 
Sbjct: 235 SLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFC 284

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%)

Query: 153 GDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKILQCKRVYGQIVLPVFYGVDPA 212
           G  I   L  A+ +S   +++ + G+    W   ++++ L          +P+  G+  A
Sbjct: 51  GGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRA 110

Query: 213 PV 214
             
Sbjct: 111 AY 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 7/88 (7%)

Query: 279 DC--KSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS 333
            C           +   E L EL +     L+ L    +     +  + +  + +  +  
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 334 SI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
                  +L  L+L     L+SL     
Sbjct: 74  DAFHFTPRLSRLNLSFNA-LESLSWKTV 100

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 21/109 (19%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 264 SFSQHLNTLVVLNLRDCKSL--KSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEM 321
           +  +    LV L+L D   L          L +L+ L LS C        I         
Sbjct: 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD------IIPE------ 263

Query: 322 FLNGTAIEELPSSIECLYKLLHLDLEDC---KSLKSLPSGLFLCRNKCR 367
                 + EL      +  L  L +       +L+ L   L   +  C 
Sbjct: 264 -----TLLELGE----IPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 303

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 27/100 (27%)

Query: 263 PSFSQHLNTLVVLNLRDCKSLKSLPAG--IHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
           PS      TL    L +   L+++P+    +L  +  + +S    L++L           
Sbjct: 27  PSLPPSTQTL---KLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLES--------H 74

Query: 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
            F N             L K+ H+++ + ++L  +     
Sbjct: 75  SFYN-------------LSKVTHIEIRNTRNLTYIDPDAL 101

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 16/116 (13%), Positives = 28/116 (24%), Gaps = 21/116 (18%)

Query: 245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCS 304
            LK   I    +    P+ +     +   +L + D   + S+P              G  
Sbjct: 106 LLKFLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA---------FQGLC 155

Query: 305 KLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLF 360
                           + L       +        KL  + L   K L  +    F
Sbjct: 156 NETL-----------TLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF 200

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 8/87 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
            C  K L S+P GI       L+L   +KL+ LP         + ++ L+   I+ LP  
Sbjct: 13  RCNSKGLTSVPTGIPSS-ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG 70

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           + + L KL  L L + K L+SLP+G+F
Sbjct: 71  VFDKLTKLTILYLHENK-LQSLPNGVF 96

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 26/113 (23%), Positives = 43/113 (38%), Gaps = 18/113 (15%)

Query: 267 QHLNTLVVLNLRDCK--SLKSLPAGIHLEFLKELDLSGCSKLKRLPDISS-AANIEEMFL 323
             L     L L       + SL     +E L+ L L     +K++ ++ + A  +EE+++
Sbjct: 45  STLKACKHLALSTNNIEKISSLS---GMENLRILSLGRN-LIKKIENLDAVADTLEELWI 100

Query: 324 NGTAIEELPSSIECLYKLLHLDL--------EDCKSLKSLPS--GLFLCRNKC 366
           +   I  L S IE L  L  L +         +   L +L     L L  N  
Sbjct: 101 SYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 17/98 (17%)

Query: 270 NTLVVLNLRDCKSLKSLPAGIHLEF--LKELDLSGCSKLKRL---------PDISSAANI 318
           N +  L+L    +L  L      +   L  LD++  +KL  L          D+S    +
Sbjct: 74  NNITTLDLSQNTNLTYL----ACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLL 129

Query: 319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
             +      + E+   +    +L  LD    K +  L 
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
           P+ +F+  +     +   D  S + L        L  LD      +  +  I     + +
Sbjct: 16  PDDNFASEVAAAFEMQATDTISEEQLAT------LTSLDCHNS-SITDMTGIEKLTGLTK 68

Query: 321 MFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
           +      I  L   +     L +L  +  K L +L 
Sbjct: 69  LICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD 101

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.1 bits (94), Expect = 9e-04
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 23/105 (21%)

Query: 270 NTLVVLNLRDCKSLKSLPAGIHLEF--LKELDLSGCSKLKRL---------PDISSAANI 318
           N +  L++   K L  L    + +   + +LDL+   +L  L          D++    +
Sbjct: 180 NKITELDVSQNKLLNRL----NCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQL 235

Query: 319 EEMFLNGTAIEELP----SSIECLY----KLLHLDLEDCKSLKSL 355
                +   + EL     S +  L+     LL +DL     L   
Sbjct: 236 TYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 31/111 (27%)

Query: 279 DC--KSLKSLPAGI------------------------HLEFLKELDLSGCSKLKRLPD- 311
           DC  + LK +P  I                         L  L +L+L   ++L  +   
Sbjct: 14  DCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPN 72

Query: 312 -ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDCKSLKSLPSGLF 360
               A++I+E+ L    I+E+ + +   L++L  L+L D + +  +  G F
Sbjct: 73  AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSF 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 11/114 (9%)

Query: 261 PNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEE 320
                S     L  L +   K    +        L+ LD+S  +    +P +   + ++ 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVDVS-RCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227

Query: 321 MFLNGTAIE-ELPSSIECLYKLLHLDLEDCK--------SLKSLPSGLFLCRNK 365
           + ++G  +  +   +I    +L  L++   +         LKSL   L L  NK
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL-QYLSLAENK 280

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 38.8 bits (91), Expect = 9e-04
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 279 DC--KSLKSLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS 334
           +C    L S+PAGI  +  + L L+  +++ +L         N+++++ N   +  +P+ 
Sbjct: 18  NCQNIRLASVPAGIPTD-KQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75

Query: 335 I-ECLYKLLHLDLEDCKSLKSLPSGLF 360
           + + L +L  LDL D   LKS+P G F
Sbjct: 76  VFDKLTQLTQLDLNDNH-LKSIPRGAF 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.88
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.7
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.64
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.58
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.58
2js7_A	160	Myeloid differentiation primary response protein M	99.53
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.42
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.34
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.33
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.32
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.3
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.3
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.25
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.25
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.22
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.21
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.21
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.2
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.2
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.18
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.18
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.17
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.16
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.14
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.14
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.13
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.1
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.1
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.07
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.06
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.03
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.03
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.02
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.01
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.01
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.99
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.99
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.99
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.99
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.99
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.98
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.97
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.97
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.95
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.92
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.91
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.88
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.88
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.87
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.76
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.75
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.74
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.73
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.63
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.58
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.3
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.27
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.17
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.0
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.66
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.6
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.41
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.38
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.14
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.76
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.68
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.52
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.74
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.2
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.05
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.53
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	88.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.81

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=6.1e-37  Score=266.25  Aligned_cols=139  Identities=37%  Similarity=0.630  Sum_probs=119.9

Q ss_pred             CCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543          117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI  191 (369)
Q Consensus       117 ~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i  191 (369)
                      .|||||||+|+|+|+.|++|||.+|.++||++|+     .+|+.|.++|.+||++|+++|||||+||+.|.||++||++|
T Consensus         8 ~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i   87 (176)
T 3jrn_A            8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTI   87 (176)
T ss_dssp             CEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHH
T ss_pred             CCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHH
Confidence            3599999999999999999999999999999999     68999999999999999999999999999999999999999


Q ss_pred             EEeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccc
Q 017543          192 LQCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIF  257 (369)
Q Consensus       192 ~~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l  257 (369)
                      ++|.++.++.|+||||+|+|++||+|+|.||++|.+++..  .+.+++++|+.||++++.+.+..+
T Consensus        88 ~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~  151 (176)
T 3jrn_A           88 MDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCS  151 (176)
T ss_dssp             HHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEEC
T ss_pred             HhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceec
Confidence            9999889999999999999999999999999999999886  467899999999999988776554

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=3.2e-36  Score=265.98  Aligned_cols=141  Identities=35%  Similarity=0.568  Sum_probs=131.1

Q ss_pred             CCCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543          117 YEGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI  191 (369)
Q Consensus       117 ~~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i  191 (369)
                      .|||||||+|+|+|..|++|||.+|.++||++|+     .+|+.|.++|.+||++|+++|||||+||+.|.||++||++|
T Consensus        35 ~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I  114 (204)
T 3ozi_A           35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEI  114 (204)
T ss_dssp             CCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHH
T ss_pred             CCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHH
Confidence            3599999999999999999999999999999999     68999999999999999999999999999999999999999


Q ss_pred             EEeeec-cCeEEeeeeeccCCCCccCCCCCccccchhhhhhhhcchhHHHHHHHhhhhhhhhhcccccC
Q 017543          192 LQCKRV-YGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEERFKENSEKLQTWRNALKEKIISACNIFTK  259 (369)
Q Consensus       192 ~~~~~~-~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~~~~~~~~~l~~W~~aL~~L~ll~~~~l~~  259 (369)
                      ++|.++ .++.|+||||+|+|++||+|+|.||++|.+++..+.  .+++++|+.||++++.+.+..+..
T Consensus       115 ~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~  181 (204)
T 3ozi_A          115 VRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGK  181 (204)
T ss_dssp             HHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECT
T ss_pred             HHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCC
Confidence            999864 579999999999999999999999999999998763  578999999999999887766554

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.88  E-value=6.1e-24  Score=182.16  Aligned_cols=112  Identities=17%  Similarity=0.273  Sum_probs=105.1

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceeeE
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKIL  192 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i~  192 (369)
                      |||||||+++| +..|+.||+.+|+++||++|+     ..|+.+.++|.++|++|++.|+|+|++|+.|.||++|+..++
T Consensus        21 ~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~   99 (154)
T 3h16_A           21 HDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLF   99 (154)
T ss_dssp             EEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHT
T ss_pred             ceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHH
Confidence            39999999999 778999999999999999999     689999999999999999999999999999999999999999


Q ss_pred             EeeeccCeEEeeeeeccCCCCccCCCCCccccchhhhh
Q 017543          193 QCKRVYGQIVLPVFYGVDPAPVKWPTGSYGDSFLKLEE  230 (369)
Q Consensus       193 ~~~~~~~l~vlPiFy~V~pS~Vr~q~g~fg~af~~~e~  230 (369)
                      +|....+..|+||||+|+|++|+++.|.|+++|.....
T Consensus       100 ~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~  137 (154)
T 3h16_A          100 QLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS  137 (154)
T ss_dssp             CCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred             HHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence            98877788999999999999999999999988875543

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.70  E-value=2.6e-19  Score=151.75  Aligned_cols=125  Identities=19%  Similarity=0.278  Sum_probs=86.9

Q ss_pred             CeeecCCCccccCchHHHHHHHHhh--CCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543          119 GVPTAIPSEDTRDNFTSHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI  191 (369)
Q Consensus       119 dvFis~~~~d~r~~F~~~L~~aL~~--~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i  191 (369)
                      ||||||+++|++  |+.+|+.+|++  .|+++|+     ..|+.|.+++.++|++|++.|+|+|+||+.|.||..|+..+
T Consensus        12 DvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~a   89 (146)
T 3ub2_A           12 DVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQA   89 (146)
T ss_dssp             EEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHH
T ss_pred             eEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHH
Confidence            999999999976  79999999998  5999998     78999999999999999999999999999999999999988


Q ss_pred             EEee-eccCeEEeeeeeccCCCCccCCCCC-ccccchhhhhhhhcchhHHHHHHHhh
Q 017543          192 LQCK-RVYGQIVLPVFYGVDPAPVKWPTGS-YGDSFLKLEERFKENSEKLQTWRNAL  246 (369)
Q Consensus       192 ~~~~-~~~~l~vlPiFy~V~pS~Vr~q~g~-fg~af~~~e~~~~~~~~~l~~W~~aL  246 (369)
                      +.+. ...+ .|+|+||+|+++++...-.. ....+...+..|....+.+.+|..++
T Consensus        90 l~~~~~~~~-~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           90 LTEAPGAEG-CTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHTSSSSSS-EEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHhhcCC-cEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence            8765 3334 56799999986654321111 11222344455555566677776553

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.64  E-value=3.6e-17  Score=139.11  Aligned_cols=94  Identities=14%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             CCCCeeecCCCccccCchHHH-HHHHHhhC--CcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCccccccccc
Q 017543          116 SYEGVPTAIPSEDTRDNFTSH-LYSALSQK--SIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDK  187 (369)
Q Consensus       116 ~~~dvFis~~~~d~r~~F~~~-L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~E  187 (369)
                      ..|||||||+++|.  .|+.+ |+.+|++.  |+++|+     ..|+.+.++|.++|++|++.|+|+|++|+.|.||+.|
T Consensus         4 ~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~E   81 (149)
T 1fyx_A            4 IXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYE   81 (149)
T ss_dssp             CCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHH
T ss_pred             ccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHH
Confidence            34699999999997  69986 99999886  999999     7899999999999999999999999999999999999


Q ss_pred             ceeeEE-eeeccCeEEeeeeec-cCC
Q 017543          188 LVKILQ-CKRVYGQIVLPVFYG-VDP  211 (369)
Q Consensus       188 Lv~i~~-~~~~~~l~vlPiFy~-V~p  211 (369)
                      +..++. +....+..++||||+ +.+
T Consensus        82 l~~a~~~~~~~~~~~vIpv~~~~i~~  107 (149)
T 1fyx_A           82 LDFSHFRLFDENNDAAILILLEPIEK  107 (149)
T ss_dssp             SCCSCCTTCGGGTTCCEEEESSCCCT
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCCh
Confidence            998875 445566788999985 444

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.58  E-value=3.9e-16  Score=136.40  Aligned_cols=91  Identities=16%  Similarity=0.229  Sum_probs=76.6

Q ss_pred             CCCeeecCCCccccCchHH-HHHHHHhh--CCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccc
Q 017543          117 YEGVPTAIPSEDTRDNFTS-HLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKL  188 (369)
Q Consensus       117 ~~dvFis~~~~d~r~~F~~-~L~~aL~~--~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~EL  188 (369)
                      .|||||||+++|.  .|+. +|+.+|++  .|+++|+     ..|+.|.++|.++|++|++.|+|+|++|+.|.||..|+
T Consensus        35 ~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El  112 (178)
T 2j67_A           35 RFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF  112 (178)
T ss_dssp             CEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHH
T ss_pred             cceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHH
Confidence            3499999999995  6997 49999988  8999999     78999999999999999999999999999999999999


Q ss_pred             eeeEEe-eeccCeEEeeeeecc
Q 017543          189 VKILQC-KRVYGQIVLPVFYGV  209 (369)
Q Consensus       189 v~i~~~-~~~~~l~vlPiFy~V  209 (369)
                      ..++.+ ..+.+..|+||||+-
T Consensus       113 ~~a~~~~~~~~~~~vIpV~~~~  134 (178)
T 2j67_A          113 YFAHHNLFHENSDHIILILLEP  134 (178)
T ss_dssp             HHTTCC-------CEEEEESSC
T ss_pred             HHHHHHHHhcCCCEEEEEEecC
Confidence            887754 345567899999964

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.58  E-value=3.6e-16  Score=134.25  Aligned_cols=94  Identities=13%  Similarity=0.131  Sum_probs=81.8

Q ss_pred             CCCeeecCCCccc---------cCchHHHHHH-HHh-hCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCc-
Q 017543          117 YEGVPTAIPSEDT---------RDNFTSHLYS-ALS-QKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYA-  179 (369)
Q Consensus       117 ~~dvFis~~~~d~---------r~~F~~~L~~-aL~-~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~-  179 (369)
                      .|||||||+++|+         +..||.||+. .|+ +.|+++|+     ..|+.|.++|.++|++|+..|+|+|+||. 
T Consensus         2 ~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~   81 (159)
T 1t3g_A            2 DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVV   81 (159)
T ss_dssp             CBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHH
T ss_pred             CceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhh
Confidence            3699999999997         4679999887 598 79999999     68999999999999999999999999997 


Q ss_pred             ccccccccceeeEEee-eccCeEEeeeeeccC
Q 017543          180 SSRWFFDKLVKILQCK-RVYGQIVLPVFYGVD  210 (369)
Q Consensus       180 ~S~~cl~ELv~i~~~~-~~~~l~vlPiFy~V~  210 (369)
                      .|.||..|+..++.+. ...+..|+||++.-.
T Consensus        82 ~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~  113 (159)
T 1t3g_A           82 RRGWSIFELETRLRNMLVTGEIKVILIECSEL  113 (159)
T ss_dssp             TTTTHHHHHSHHHHHHHHTTSSEEEEEECSCC
T ss_pred             cChHHHHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence            9999999999888764 455678999988643

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.53  E-value=2.4e-16  Score=135.55  Aligned_cols=92  Identities=14%  Similarity=0.110  Sum_probs=80.9

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhC--CcceEe-----ccCcchhHHHHHHHH-HcceeeEEeccCCcccccccccce
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQK--SIETFI-----NRGDEISQSLVDAIE-ASAISLIIFSEGYASSRWFFDKLV  189 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~--gi~~~~-----~~G~~i~~~l~~~ie-~S~i~ivv~S~~y~~S~~cl~ELv  189 (369)
                      |||||||+++|  ..|+.+|+.+|.+.  |+++|+     ..|+.+.+++.++|+ +|++.|+|+|++|+.|.||..|+.
T Consensus        17 yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~   94 (160)
T 2js7_A           17 FDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTK   94 (160)
T ss_dssp             EEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHH
T ss_pred             eEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHH
Confidence            49999999999  46999999999884  699998     689999999999999 799999999999999999999999


Q ss_pred             eeEEee-eccCeEEeeeeeccCC
Q 017543          190 KILQCK-RVYGQIVLPVFYGVDP  211 (369)
Q Consensus       190 ~i~~~~-~~~~l~vlPiFy~V~p  211 (369)
                      .++.+. ...+..|+||||+..+
T Consensus        95 ~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           95 FALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHccCCCEEEEEEEcccc
Confidence            888764 3345689999997654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=1.9e-13  Score=130.39  Aligned_cols=111  Identities=32%  Similarity=0.519  Sum_probs=98.8

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCC-ccc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAI-EEL  331 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l-~~L  331 (369)
                      +.+..+|..  +..+++|+.|+|++| .+..+|..+ .+++|++|+|++|+..+.+|. ++.+++|++|+|++|.+ ..+
T Consensus       193 n~l~~lp~~--l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~  269 (328)
T 4fcg_A          193 TGIRSLPAS--IANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL  269 (328)
T ss_dssp             ECCCCCCGG--GGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC
T ss_pred             CCcCcchHh--hcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc
Confidence            345566643  778999999999999 588899888 899999999999999999998 99999999999999855 589


Q ss_pred             CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |..++++++|++|+|++|++++.+|.++++|++|+.+
T Consensus       270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            9999999999999999999999999999999998765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.42  E-value=2.2e-13  Score=129.97  Aligned_cols=119  Identities=27%  Similarity=0.414  Sum_probs=92.9

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-c---------ccCccEEEccCCCCCCcCCC-CCC
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-H---------LEFLKELDLSGCSKLKRLPD-ISS  314 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~---------L~~L~~L~Ls~~~~l~~lP~-i~~  314 (369)
                      |+.+.+.. +.+..+|..  +..+++|+.|++++|..++.+|..+ .         +++|++|+|++ +.+..+|. +++
T Consensus       129 L~~L~Ls~-n~l~~lp~~--l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~~l~~  204 (328)
T 4fcg_A          129 LETLTLAR-NPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPASIAN  204 (328)
T ss_dssp             CSEEEEES-CCCCCCCGG--GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCGGGGG
T ss_pred             CCEEECCC-CccccCcHH--HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchHhhcC
Confidence            44444433 345566543  6778888888888876778888776 4         88888888888 45668887 888


Q ss_pred             CCCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          315 AANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +++|++|+|++|.+..+|..++++++|++|+|++|+..+.+|..+..+++|+.|
T Consensus       205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  258 (328)
T 4fcg_A          205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRL  258 (328)
T ss_dssp             CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred             CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence            888888988888888888888888889999998888888888888888888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.37  E-value=1.4e-12  Score=117.90  Aligned_cols=118  Identities=30%  Similarity=0.399  Sum_probs=92.3

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      ++.+.+.. +.+..++. ..+..+++|+.|+|++| .++.+|...  .+++|++|+|++ +.+..+|.  +..+++|++|
T Consensus        42 L~~L~Ls~-n~i~~~~~-~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           42 AQILYLHD-NQITKLEP-GVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT-NQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEEcCC-CccCccCH-HHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC-CcCCccChhHhCcchhhCeE
Confidence            33344433 44455432 23677899999999999 588888765  799999999998 56778875  7899999999


Q ss_pred             EeecCCCcccCccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          322 FLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      +|++|.|+.+|..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus       118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  164 (229)
T 3e6j_A          118 FMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA  164 (229)
T ss_dssp             ECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             eccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence            99999999999999999999999999998 666664 46677777765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.34  E-value=7.8e-13  Score=139.36  Aligned_cols=100  Identities=22%  Similarity=0.302  Sum_probs=58.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~  343 (369)
                      +..+..|+.|+|++| .+..+|..+ .+++|++|+|++ |.+..+|. |++|++|++|+|++|.|+.||.+|++|++|++
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            345556666666666 355666555 566666666665 34445665 66666666666666666666666666666666


Q ss_pred             EecccCCCCCcCCccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|. ++.||.+|+.|++|+.|
T Consensus       298 L~L~~N~-l~~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          298 FYFFDNM-VTTLPWEFGNLCNLQFL  321 (727)
T ss_dssp             EECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred             EECCCCC-CCccChhhhcCCCccEE
Confidence            6666655 45666666666655554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.33  E-value=2.6e-12  Score=115.51  Aligned_cols=112  Identities=15%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..++....+..+++|+.|+|++| .+..++. .+ .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+.
T Consensus        42 N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  119 (220)
T 2v70_A           42 NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSNRITC  119 (220)
T ss_dssp             SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSSCCEEECTTSCCCC
T ss_pred             CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcCCCEEECCCCcCCe
Confidence            44444433334567788888888888 4676665 45 788888888887 45666664  7788888888888888886


Q ss_pred             c-CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          331 L-PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       331 L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      + |..++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus       120 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  158 (220)
T 2v70_A          120 VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL  158 (220)
T ss_dssp             BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred             ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence            6 5667888888888888887554457777777777654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.32  E-value=1.6e-12  Score=111.28  Aligned_cols=117  Identities=22%  Similarity=0.338  Sum_probs=90.9

Q ss_pred             hhhhhhhhccccc--CCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543          246 LKEKIISACNIFT--KTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~--~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L  321 (369)
                      ++.+....+. +.  .+|..  +..+++|+.|++++| .+..+ ..+ .+++|++|+|++|.....+|. ++++++|++|
T Consensus        26 L~~L~l~~n~-l~~~~i~~~--~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           26 VRELVLDNCK-SNDGKIEGL--TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CSEEECCSCB-CBTTBCSSC--CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CCEEECCCCC-CChhhHHHH--HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            4444454444 44  56543  678899999999999 47777 566 899999999998554333676 6779999999


Q ss_pred             EeecCCCcccC--ccccCCCCCcEEecccCCCCCcCCc----cccCCCCCCCC
Q 017543          322 FLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP--~~i~~L~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L  368 (369)
                      +|++|.|+.+|  ..++.+++|++|++++|+ +..+|.    .+..+++|+.|
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEe
Confidence            99999999887  678999999999999998 667776    77788888776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.30  E-value=1.2e-12  Score=109.96  Aligned_cols=118  Identities=24%  Similarity=0.347  Sum_probs=94.1

Q ss_pred             hhhhhhhhhcccc-cCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCc-CCC-CCCCCCCCE
Q 017543          245 ALKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKR-LPD-ISSAANIEE  320 (369)
Q Consensus       245 aL~~L~ll~~~~l-~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~-lP~-i~~L~~L~~  320 (369)
                      .++.+....+... ..+|.  .+..+++|+.|++++| .+..+ ..+ .+++|++|+|++|. +.. +|. ++.+++|++
T Consensus        18 ~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           18 DVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCE
T ss_pred             cCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCE
Confidence            3455555554433 25554  3678999999999999 57777 566 89999999999955 555 777 778999999


Q ss_pred             EEeecCCCcccC--ccccCCCCCcEEecccCCCCCcCCc----cccCCCCCCCC
Q 017543          321 MFLNGTAIEELP--SSIECLYKLLHLDLEDCKSLKSLPS----GLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n~l~~LP--~~i~~L~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L  368 (369)
                      |+|++|.++.+|  ..++.+++|++|++++|+ +..+|.    .+..+++|+.|
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L  145 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL  145 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence            999999999876  789999999999999998 666665    68888888876

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.30  E-value=8.9e-12  Score=109.54  Aligned_cols=96  Identities=23%  Similarity=0.316  Sum_probs=50.6

Q ss_pred             eeeEEeecCCCCCCCcCcc--c-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEE
Q 017543          271 TLVVLNLRDCKSLKSLPAG--I-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHL  344 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~--i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L  344 (369)
                      +|+.|++++| .+..+|..  + .+++|++|+|++| .+..+ |. ++++++|++|+|++|.|+.+|.. ++.+++|++|
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence            4555555555 35555442  3 5555566666553 33333 33 55555566666655555544433 4555556666


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|++.+..|..+..+++|+.|
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEE
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEE
Confidence            665555444445555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.30  E-value=1.2e-11  Score=108.98  Aligned_cols=107  Identities=17%  Similarity=0.282  Sum_probs=76.3

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      +.+..+|..  +  ..+|+.|+|++| .+..+|..+ .+++|++|+|++ +.+..+|.  +.+|++|++|+|++|.|+.+
T Consensus        20 ~~l~~ip~~--~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i   93 (193)
T 2wfh_A           20 KGLKVLPKG--I--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSYNRLRCI   93 (193)
T ss_dssp             SCCSSCCSC--C--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred             CCCCcCCCC--C--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCCCccCEe
Confidence            345555542  2  356788888888 577888777 788888888887 55666663  78888888888888888877


Q ss_pred             Cc-cccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          332 PS-SIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       332 P~-~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |. .++.|++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus        94 ~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  131 (193)
T 2wfh_A           94 PPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHL  131 (193)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred             CHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEE
Confidence            65 47788888888888877 5566664 5567766654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=1e-11  Score=113.46  Aligned_cols=118  Identities=28%  Similarity=0.401  Sum_probs=90.0

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+.+.. +.+..++. ..+..+++|+.|+|++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|
T Consensus        61 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           61 LTWLNLDY-NQLQTLSA-GVFDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             CCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCC-CcCCccCH-hHhccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEE
Confidence            44444444 44555543 23567899999999999 577777654  799999999998 56778875  7889999999


Q ss_pred             EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      +|++|.|+.+|. .++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  184 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTI  184 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence            999999998887 58899999999999998 445554 67777777765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.27  E-value=1.9e-11  Score=110.44  Aligned_cols=107  Identities=26%  Similarity=0.315  Sum_probs=91.0

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      ..+..+|..    ..++|+.|+|++|. +..+ |..+ .+++|++|+|++ +.++.+|.  +..+++|++|+|++|.|+.
T Consensus        29 ~~l~~ip~~----~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  102 (229)
T 3e6j_A           29 KRHASVPAG----IPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLGTNQLTV  102 (229)
T ss_dssp             SCCSSCCSC----CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCcCccCCC----CCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCC-CCCCCcChhhcccCCCcCEEECCCCcCCc
Confidence            445666643    24889999999994 6666 5556 899999999999 56788885  7999999999999999999


Q ss_pred             cCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|.. ++.+++|++|+|++|+ +..+|..+..+++|+.|
T Consensus       103 l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L  140 (229)
T 3e6j_A          103 LPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHL  140 (229)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEE
T ss_pred             cChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEE
Confidence            9876 5899999999999998 77999999999988876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.27  E-value=1e-11  Score=111.56  Aligned_cols=110  Identities=24%  Similarity=0.308  Sum_probs=83.8

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..++.. .+..+++|+.|+|++| .+..+ |..+ .+++|++|+|++ +.+..+|.  +..+++|++|+|++|.|+.
T Consensus        42 n~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~~  118 (220)
T 2v9t_B           42 NTIKVIPPG-AFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNANKINC  118 (220)
T ss_dssp             SCCCEECTT-SSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CcCCCcCHh-HhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence            445555432 2567888999999998 46666 5566 899999999998 66778885  6889999999999999987


Q ss_pred             c-CccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          331 L-PSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       331 L-P~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      + |..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus       119 ~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B          119 LRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             eCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence            7 4568889999999999988 555554 46677777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.25  E-value=9.4e-12  Score=127.53  Aligned_cols=109  Identities=17%  Similarity=0.227  Sum_probs=88.5

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL-  331 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L-  331 (369)
                      .+.+..+|.   ++.+++|+.|+|++| .+..+|..+ .|++|+.|+|++ |.+..+|.+++|++|+.|+|++|.|+.+ 
T Consensus       450 ~n~l~~lp~---~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~  524 (567)
T 1dce_A          450 HKDLTVLCH---LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQQSA  524 (567)
T ss_dssp             TSCCSSCCC---GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             CCCCCCCcC---ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCC-CCCCCCcccCCCCCCcEEECCCCCCCCCC
Confidence            345666663   678899999999999 588999888 899999999998 5677788888999999999999999987 


Q ss_pred             -CccccCCCCCcEEecccCCCCCcCCcccc----CCCCCCCC
Q 017543          332 -PSSIECLYKLLHLDLEDCKSLKSLPSGLF----LCRNKCRI  368 (369)
Q Consensus       332 -P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~----~L~~L~~L  368 (369)
                       |..++.|++|++|+|++|+ +..+|..+.    .+++|+.|
T Consensus       525 ~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          525 AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence             8889999999999999988 555555432    36677655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.25  E-value=1.6e-12  Score=122.95  Aligned_cols=120  Identities=19%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             hhhhhhhhcccc-cCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543          246 LKEKIISACNIF-TKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (369)
Q Consensus       246 L~~L~ll~~~~l-~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~  322 (369)
                      |+.+.+.+++.+ ..+|..  +..+++|++|+|++|...+.+|..+ .+++|++|+|++|...+.+|. ++.+++|++|+
T Consensus        78 L~~L~L~~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPA--IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             CSEEEEEEETTEESCCCGG--GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCeeeCCCCCcccccCChh--HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            444444432333 344433  6778888888888884333777777 788888888888554446776 88888888888


Q ss_pred             eecCCCc-ccCccccCCC-CCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          323 LNGTAIE-ELPSSIECLY-KLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~-~LP~~i~~L~-~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|.++ .+|..++.+. +|++|+|++|++.+.+|..+..+. |+.|
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L  202 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV  202 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence            8888887 7888888887 888888888886667888877765 5544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.25  E-value=2.4e-11  Score=113.87  Aligned_cols=109  Identities=32%  Similarity=0.450  Sum_probs=87.0

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..+|..  +..+++|+.|++++| .+..+|.. + .+++|++|+|++ +.+..+|.  +..+++|+.|+|++|+|+.
T Consensus        87 N~l~~l~~~--~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  162 (290)
T 1p9a_G           87 NQLQSLPLL--GQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (290)
T ss_dssp             SCCSSCCCC--TTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             CcCCcCchh--hccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc
Confidence            445566643  567888999999988 57777754 5 789999999998 56777775  7888999999999999998


Q ss_pred             cCccc-cCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          331 LPSSI-ECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~i-~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|..+ ..+++|++|+|++|+ +..+|..++.+.+|++|
T Consensus       163 l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l  200 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFA  200 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred             cCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeE
Confidence            88764 778999999999888 77899888887777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.25  E-value=2.2e-11  Score=107.91  Aligned_cols=98  Identities=32%  Similarity=0.473  Sum_probs=52.2

Q ss_pred             cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKL  341 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L  341 (369)
                      ..+++|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+.+|.. ++++++|
T Consensus        49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           49 DELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            45555666666655 355555433  455666666665 33444543  45566666666666666555544 4555666


Q ss_pred             cEEecccCCCCCcCCcc-ccCCCCCCC
Q 017543          342 LHLDLEDCKSLKSLPSG-LFLCRNKCR  367 (369)
Q Consensus       342 ~~L~Ls~n~~l~~lP~~-i~~L~~L~~  367 (369)
                      ++|+|++|+ +..+|.. +..+++|+.
T Consensus       127 ~~L~l~~N~-l~~~~~~~~~~l~~L~~  152 (208)
T 2o6s_A          127 KDLRLYQNQ-LKSVPDGVFDRLTSLQY  152 (208)
T ss_dssp             CEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred             CEEECCCCc-cceeCHHHhccCCCccE
Confidence            666666555 3334433 344555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.4e-11  Score=110.98  Aligned_cols=117  Identities=26%  Similarity=0.386  Sum_probs=93.0

Q ss_pred             hhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEE
Q 017543          247 KEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMF  322 (369)
Q Consensus       247 ~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~  322 (369)
                      +.+.+.. +.+..++.. .+..+++|+.|+|++| .+..++.. + .+++|++|+|++ +.+..+|.  ++.+++|++|+
T Consensus        38 ~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           38 EKLDLQS-TGLATLSDA-TFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             CEEECTT-SCCCCCCTT-TTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEEEccC-CCcCccCHh-HhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCC-CcccccChhHhcccCCCCEEE
Confidence            3344433 344555432 3678999999999999 57777665 5 899999999999 56777774  89999999999


Q ss_pred             eecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      |++|.|+.+|.. ++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  160 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTL  160 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEE
Confidence            999999999887 5899999999999998 666666 57788888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.22  E-value=2.5e-11  Score=103.83  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=85.0

Q ss_pred             cceeeEEeecCCCCCC--CcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcEE
Q 017543          269 LNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLHL  344 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~--~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~L  344 (369)
                      .++|+.|++++|. +.  .+|..+ .+++|++|+|++| .+..++.++.+++|++|+|++|.+.. +|..++++++|++|
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3679999999994 66  899888 9999999999995 47777559999999999999999997 88888889999999


Q ss_pred             ecccCCCCCcCC--ccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP--~~i~~L~~L~~L  368 (369)
                      +|++|+ +..+|  ..+..+++|+.|
T Consensus       101 ~Ls~N~-l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A          101 NLSGNK-LKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             ECBSSS-CCSSGGGGGGSSCSCCCEE
T ss_pred             eccCCc-cCcchhHHHHhcCCCCCEE
Confidence            999998 77777  788888888876

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.22  E-value=1.1e-11  Score=107.11  Aligned_cols=107  Identities=15%  Similarity=0.199  Sum_probs=86.3

Q ss_pred             ccccCCCCCCCccccc-eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLN-TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~-~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..++.   +..+. +|+.|++++| .+..+ ..+ .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|..
T Consensus        29 n~l~~i~~---~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i~~  102 (176)
T 1a9n_A           29 YKIPVIEN---LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLVE  102 (176)
T ss_dssp             SCCCSCCC---GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEECCSCCCCC
T ss_pred             CCCchhHH---hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCC-CcccccCcchhhcCCCCCEEECCCCcCCc
Confidence            34555542   33444 8999999999 57777 456 899999999998 56778885  5889999999999999999


Q ss_pred             cCc--cccCCCCCcEEecccCCCCCcCCcc----ccCCCCCCCC
Q 017543          331 LPS--SIECLYKLLHLDLEDCKSLKSLPSG----LFLCRNKCRI  368 (369)
Q Consensus       331 LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~----i~~L~~L~~L  368 (369)
                      +|.  .++.+++|++|++++|+ +..+|..    +..+++|+.|
T Consensus       103 ~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~L  145 (176)
T 1a9n_A          103 LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL  145 (176)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred             chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCcccee
Confidence            987  78999999999999998 6788885    7888888765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.21  E-value=2.5e-11  Score=104.93  Aligned_cols=99  Identities=15%  Similarity=0.179  Sum_probs=85.9

Q ss_pred             cccceeeEEeecCCCCCCCcCcccccc-CccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccc-cCCCCCcEE
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGIHLE-FLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL  344 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i~L~-~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L  344 (369)
                      ..+.+|+.|++++| .+..+|....+. +|++|+|++ +.+..++.++.+++|++|+|++|.|+.+|..+ +.+++|++|
T Consensus        16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~-N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCC-CCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            45778999999999 588887544555 999999999 56777866999999999999999999999776 999999999


Q ss_pred             ecccCCCCCcCCc--cccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPS--GLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~--~i~~L~~L~~L  368 (369)
                      +|++|+ ++.+|.  .+..+++|+.|
T Consensus        94 ~L~~N~-i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           94 ILTNNS-LVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             ECCCCc-CCcchhhHhhhcCCCCCEE
Confidence            999998 788998  78888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.21  E-value=1.9e-11  Score=102.45  Aligned_cols=98  Identities=19%  Similarity=0.199  Sum_probs=85.4

Q ss_pred             ccceeeEEeecCCCCCC--CcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcE
Q 017543          268 HLNTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLH  343 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~--~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~  343 (369)
                      ..++|+.|++++|. +.  .+|..+ .+++|++|++++| .+..++.++.+++|++|+|++|.|.. +|..++.+++|++
T Consensus        15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            34789999999994 66  899888 8999999999995 67777559999999999999999997 8888888999999


Q ss_pred             EecccCCCCCcCC--ccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP--~~i~~L~~L~~L  368 (369)
                      |++++|+ +..+|  ..+..+++|+.|
T Consensus        93 L~ls~N~-i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           93 LNLSGNK-IKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             EECTTSC-CCSHHHHGGGGGCTTCCEE
T ss_pred             EECCCCc-CCChHHHHHHhhCCCCCEE
Confidence            9999999 66655  888999988876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=7.2e-11  Score=101.91  Aligned_cols=85  Identities=27%  Similarity=0.404  Sum_probs=44.7

Q ss_pred             cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccc-cCCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSI-ECLYKL  341 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L  341 (369)
                      ..+++|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+.+|..+ ..+++|
T Consensus        49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  126 (177)
T 2o6r_A           49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL  126 (177)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             cCcccccEEECCCC-cceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence            44555555555555 344554432  455555555555 33444443  455555555555555555555543 455555


Q ss_pred             cEEecccCCCCC
Q 017543          342 LHLDLEDCKSLK  353 (369)
Q Consensus       342 ~~L~Ls~n~~l~  353 (369)
                      ++|+|++|++.+
T Consensus       127 ~~L~l~~N~~~~  138 (177)
T 2o6r_A          127 QKIWLHTNPWDC  138 (177)
T ss_dssp             CEEECCSSCBCC
T ss_pred             CEEEecCCCeec
Confidence            555555555433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.20  E-value=2e-11  Score=124.83  Aligned_cols=93  Identities=28%  Similarity=0.332  Sum_probs=47.5

Q ss_pred             cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc--ccCccccCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE--ELPSSIECLYK  340 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~~  340 (369)
                      ..+++|++|+|++| .+..+|...  +|++|++|+|++ +.+..+|.  +++|++|++|+|++|.++  .+|..++.|++
T Consensus        97 ~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~  174 (635)
T 4g8a_A           97 QSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  174 (635)
T ss_dssp             TTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             cCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence            44555555555555 355555432  455555555555 33444443  555555555555555554  23445555555


Q ss_pred             CcEEecccCCCCCcCCccccC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      |++|++++|++.+..|..+..
T Consensus       175 L~~L~L~~N~l~~~~~~~l~~  195 (635)
T 4g8a_A          175 LEHLDLSSNKIQSIYCTDLRV  195 (635)
T ss_dssp             CCEEECCSSCCCEECGGGGHH
T ss_pred             hhhhcccCccccccccccccc
Confidence            555555555533333334433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.20  E-value=9.8e-12  Score=131.60  Aligned_cols=76  Identities=22%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             cCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          293 EFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       293 ~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++|++|+|++|...+.+|. +++|++|+.|+|++|.++ .+|.++++|++|++|||++|++.+.+|..+..|+.|+.|
T Consensus       632 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             BCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            4566666666555556665 777777777777777776 677777777777777777777666777777777666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.20  E-value=5.3e-11  Score=106.88  Aligned_cols=108  Identities=25%  Similarity=0.349  Sum_probs=89.0

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..+|..  +  ..+|+.|+|++| .+..+|. .+ .+++|++|+|++ +.+..+ |. +.++++|++|+|++|.|+.
T Consensus        21 ~~l~~iP~~--l--~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           21 KGLTEIPTN--L--PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             SCCSSCCSS--C--CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCcCcCCCc--c--CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence            345666643  2  268999999999 5888887 45 899999999999 456666 55 9999999999999999999


Q ss_pred             cCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus        95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  133 (220)
T 2v9t_B           95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLL  133 (220)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEE
Confidence            9987 5899999999999999555557778888888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=7.6e-12  Score=131.83  Aligned_cols=102  Identities=26%  Similarity=0.296  Sum_probs=89.1

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      +.+..+|..  +..+++|+.|+|++| .+..+|..+ .|++|++|+|++ |.+..+|. |++|++|++|+|++|.|+.||
T Consensus       234 n~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp  309 (727)
T 4b8c_D          234 LQIFNISAN--IFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDNMVTTLP  309 (727)
T ss_dssp             SCCSCCCGG--GGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSSCCCCCC
T ss_pred             CCCCCCChh--hcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCCCCCccC
Confidence            445566654  558999999999999 588999999 999999999999 55779997 999999999999999999999


Q ss_pred             ccccCCCCCcEEecccCCCCCcCCcccc
Q 017543          333 SSIECLYKLLHLDLEDCKSLKSLPSGLF  360 (369)
Q Consensus       333 ~~i~~L~~L~~L~Ls~n~~l~~lP~~i~  360 (369)
                      .+|++|++|++|+|++|++.+.+|..+.
T Consensus       310 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~  337 (727)
T 4b8c_D          310 WEFGNLCNLQFLGVEGNPLEKQFLKILT  337 (727)
T ss_dssp             SSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred             hhhhcCCCccEEeCCCCccCCCChHHHh
Confidence            9999999999999999997777776654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=5.1e-11  Score=103.24  Aligned_cols=99  Identities=18%  Similarity=0.251  Sum_probs=80.9

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .+.+..+|..  +  ..+|+.|+|++| .+..++ ..+ .+++|++|+|++ |.+..+|.  ++++++|++|+|++|.|+
T Consensus        21 ~n~l~~iP~~--~--~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           21 NIRLASVPAG--I--PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             SSCCSSCCSC--C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCCccCCC--c--CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCCccc
Confidence            3456667653  2  378999999999 577774 456 899999999999 67888886  689999999999999999


Q ss_pred             ccCcc-ccCCCCCcEEecccCCCCCcCCccc
Q 017543          330 ELPSS-IECLYKLLHLDLEDCKSLKSLPSGL  359 (369)
Q Consensus       330 ~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i  359 (369)
                      .+|.. ++.|++|++|+|++|+ +...|..+
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~  124 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNP-WDCECRDI  124 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSC-BCTTBGGG
T ss_pred             eeCHHHhccccCCCEEEeCCCC-cccccccH
Confidence            99986 8999999999999998 55555543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=6.1e-11  Score=109.68  Aligned_cols=119  Identities=26%  Similarity=0.307  Sum_probs=83.0

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+.... +.+..++. ..+..+++|+.|++++| .+..+|.. + .+++|++|+|++| .+..+|.  ++.+++|++|
T Consensus        87 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           87 LTYLILTG-NQLQSLPN-GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             CCEEECTT-SCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCC-CccCccCh-hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEE
Confidence            33343433 34455543 23567888888888888 46676665 3 7888888888884 5667764  6788888888


Q ss_pred             EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|.++.+|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  210 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  210 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence            8888888877665 5788888888888888444444446677777654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.18  E-value=4.4e-11  Score=105.26  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=50.5

Q ss_pred             ccccceeeEEeecCCCCCC-CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCC-CcccCccccCCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLK-SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTA-IEELPSSIECLYKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~-~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~-l~~LP~~i~~L~~L  341 (369)
                      +..+++|+.|++++|. +. ..|..+ .+++|++|+|++|......|. ++.+++|++|+|++|. +..+| .++.+++|
T Consensus        84 l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L  161 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPEL  161 (197)
T ss_dssp             GTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSC
T ss_pred             hhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCC
Confidence            3445555555555553 33 244444 555555555555332222333 5555555555555554 55554 35555555


Q ss_pred             cEEecccCCCCCcCCccccCCCCCCCC
Q 017543          342 LHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       342 ~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++|++++|+ +..+| .+..+++|++|
T Consensus       162 ~~L~l~~n~-i~~~~-~l~~l~~L~~L  186 (197)
T 4ezg_A          162 KSLNIQFDG-VHDYR-GIEDFPKLNQL  186 (197)
T ss_dssp             CEEECTTBC-CCCCT-TGGGCSSCCEE
T ss_pred             CEEECCCCC-CcChH-HhccCCCCCEE
Confidence            555555555 44444 45555555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.18  E-value=3.3e-11  Score=123.48  Aligned_cols=94  Identities=24%  Similarity=0.329  Sum_probs=85.0

Q ss_pred             eeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543          271 TLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~  348 (369)
                      .|+.|+|++| .+..+|. + .+++|+.|+|++ |.+..+|. +++|++|+.|+|++|.|+.+| .+++|++|++|+|++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            4889999999 6888997 8 999999999999 56779997 999999999999999999999 899999999999999


Q ss_pred             CCCCCcC-CccccCCCCCCCC
Q 017543          349 CKSLKSL-PSGLFLCRNKCRI  368 (369)
Q Consensus       349 n~~l~~l-P~~i~~L~~L~~L  368 (369)
                      |++.+.. |..+..|++|+.|
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L  538 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLL  538 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEE
T ss_pred             CCCCCCCCcHHHhcCCCCCEE
Confidence            9944443 9999999999876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.18  E-value=4.5e-11  Score=115.26  Aligned_cols=88  Identities=27%  Similarity=0.391  Sum_probs=46.4

Q ss_pred             ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccc----cC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSI----EC  337 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i----~~  337 (369)
                      +..+++|+.|+|++| .+..+|.. + .+.+|++|+|++ +.+..++ . +..|++|+.|+|++|.|+.+|..+    +.
T Consensus        84 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~  161 (361)
T 2xot_A           84 FVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK  161 (361)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred             ccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence            345555666666555 35555443 2 555666666665 3344432 3 555566666666666665555543    34


Q ss_pred             CCCCcEEecccCCCCCcCC
Q 017543          338 LYKLLHLDLEDCKSLKSLP  356 (369)
Q Consensus       338 L~~L~~L~Ls~n~~l~~lP  356 (369)
                      +++|++|+|++|+ +..+|
T Consensus       162 l~~L~~L~L~~N~-l~~l~  179 (361)
T 2xot_A          162 LPKLMLLDLSSNK-LKKLP  179 (361)
T ss_dssp             CTTCCEEECCSSC-CCCCC
T ss_pred             CCcCCEEECCCCC-CCccC
Confidence            5556666666555 44444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.18  E-value=6.8e-11  Score=109.17  Aligned_cols=118  Identities=26%  Similarity=0.370  Sum_probs=89.8

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+.+.. +.+..++.. .+..+++|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|
T Consensus        63 L~~L~l~~-n~l~~i~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  138 (270)
T 2o6q_A           63 LRLLYLND-NKLQTLPAG-IFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYL  138 (270)
T ss_dssp             CCEEECCS-SCCSCCCTT-TTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCC-CccCeeChh-hhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEE
Confidence            34343433 445566543 3467889999999998 577877655  789999999998 55667764  7899999999


Q ss_pred             EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      +|++|.|+.+|.. ++.+++|++|+|++|. +..+|. .+..+++|+.|
T Consensus       139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  186 (270)
T 2o6q_A          139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTL  186 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             ECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEE
Confidence            9999999988876 6889999999999988 556665 46777887765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.17  E-value=8.6e-11  Score=101.78  Aligned_cols=92  Identities=27%  Similarity=0.501  Sum_probs=79.8

Q ss_pred             eEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccc-cCCCCCcEEecccC
Q 017543          273 VVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHLDLEDC  349 (369)
Q Consensus       273 ~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L~Ls~n  349 (369)
                      +.+++++| .++.+|..+. .+|++|+|++ +.+..+| . ++++++|++|+|++|+|+.+|..+ ++|++|++|+|++|
T Consensus        15 ~~l~~~~n-~l~~iP~~~~-~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNI-RLASVPAGIP-TDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSS-CCSSCCSCCC-TTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCC-CCCccCCCcC-CCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67899998 6899998774 7899999999 5577775 5 999999999999999999999874 89999999999999


Q ss_pred             CCCCcCCcc-ccCCCCCCCC
Q 017543          350 KSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       350 ~~l~~lP~~-i~~L~~L~~L  368 (369)
                      + +..+|.. +..+++|+.|
T Consensus        92 ~-l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           92 H-LKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             C-CCCCCTTTTTTCTTCSEE
T ss_pred             c-cceeCHHHhccccCCCEE
Confidence            8 6778876 7788888875

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.16  E-value=1.4e-10  Score=107.08  Aligned_cols=118  Identities=25%  Similarity=0.376  Sum_probs=93.3

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+.+.. +.+..++. ..+..+++|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|
T Consensus        87 L~~L~l~~-n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L  162 (270)
T 2o6q_A           87 LETLWVTD-NKLQALPI-GVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKEL  162 (270)
T ss_dssp             CCEEECCS-SCCCCCCT-TTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCC-CcCCcCCH-hHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCccccee
Confidence            33333333 44556654 33578899999999999 577777654  899999999999 56788885  8999999999


Q ss_pred             EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      +|++|.|+.+|.. +.++++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus       163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  210 (270)
T 2o6q_A          163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKML  210 (270)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             EecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEE
Confidence            9999999988875 7899999999999998 6677765 6667887765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.16  E-value=1e-10  Score=105.07  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=88.5

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCc-c-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-G-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      +.++.+|..  +  ...++.|+|++| .+..++. . + .+++|++|+|++ +.+..+|.  ++++++|++|+|++|.|+
T Consensus        21 n~l~~iP~~--~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~L~Ls~N~l~   94 (220)
T 2v70_A           21 QKLNKIPEH--I--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGAFEGASGVNEILLTSNRLE   94 (220)
T ss_dssp             SCCSSCCSC--C--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcccCccC--C--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCC-CcCCEECHHHhCCCCCCCEEECCCCccC
Confidence            455666643  2  345789999999 5887743 3 5 899999999999 56777774  999999999999999999


Q ss_pred             ccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          330 ELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+|.. ++.+++|++|+|++|++.+..|..+..+++|+.|
T Consensus        95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            88775 8999999999999999666668888888888875

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.16  E-value=7.5e-11  Score=109.47  Aligned_cols=100  Identities=25%  Similarity=0.400  Sum_probs=73.4

Q ss_pred             ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      +..+++|+.|++++| .+..+|.. + .+++|++|+|++ +.+..+|.  +..+++|++|+|++|.+..+ |..++++++
T Consensus       125 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  202 (285)
T 1ozn_A          125 FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (285)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcccccCHhHccCccc
Confidence            566778888888888 46666655 4 688888888887 45666664  77888888888888888755 677788888


Q ss_pred             CcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLP-SGLFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L  368 (369)
                      |++|+|++|+ +..+| ..+..+++|+.|
T Consensus       203 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          203 LMTLYLFANN-LSALPTEALAPLRALQYL  230 (285)
T ss_dssp             CCEEECCSSC-CSCCCHHHHTTCTTCCEE
T ss_pred             ccEeeCCCCc-CCcCCHHHcccCcccCEE
Confidence            8888888887 44455 346677777654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.16  E-value=9.3e-12  Score=117.77  Aligned_cols=120  Identities=21%  Similarity=0.231  Sum_probs=97.0

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCC-CCCEEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAA-NIEEMF  322 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~-~L~~L~  322 (369)
                      |+.+....+.....+|..  +..+++|++|++++|...+.+|..+ .+++|++|+|++|...+.+|. ++.+. +|++|+
T Consensus       103 L~~L~Ls~n~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~  180 (313)
T 1ogq_A          103 LHYLYITHTNVSGAIPDF--LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             CSEEEEEEECCEEECCGG--GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             CCEEECcCCeeCCcCCHH--HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence            444444444433355543  7789999999999995444788888 899999999999655558897 88888 999999


Q ss_pred             eecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          323 LNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|.+. .+|..++.++ |++|+|++|++.+.+|..+..+++|+.|
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  226 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKI  226 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEE
Confidence            9999998 8899999998 9999999999777888889989888876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.16  E-value=3.5e-11  Score=105.93  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=88.9

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-cc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-EL  331 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~L  331 (369)
                      +.+..++ .  +..+++|+.|++++| .+..++ .+ .+++|++|++++|......|. ++.|++|++|+|++|.+. ..
T Consensus        54 n~i~~l~-~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~  128 (197)
T 4ezg_A           54 INVTDLT-G--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI  128 (197)
T ss_dssp             SCCSCCT-T--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGG
T ss_pred             CCccChH-H--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHh
Confidence            4455655 2  678899999999999 566665 56 899999999999554444565 999999999999999998 47


Q ss_pred             CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          332 PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |..++.+++|++|+|++|+.++.+| .+..+++|+.|
T Consensus       129 ~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A          129 LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL  164 (197)
T ss_dssp             HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred             HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence            8889999999999999998788888 68888888765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.15  E-value=3.5e-11  Score=127.39  Aligned_cols=103  Identities=22%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~  342 (369)
                      +..+++|+.|++++|...+.+|..+ .+++|++|+|++|...+.+|. ++++++|++|+|++|.+. .+|.+++.+++|+
T Consensus       438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~  517 (768)
T 3rgz_A          438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA  517 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence            4455566666666664333555555 566666666666544445554 666666666666666665 5666666666666


Q ss_pred             EEecccCCCCCcCCccccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+|++|++.+.+|..+..+++|+.|
T Consensus       518 ~L~L~~N~l~~~~p~~l~~l~~L~~L  543 (768)
T 3rgz_A          518 ILKLSNNSFSGNIPAELGDCRSLIWL  543 (768)
T ss_dssp             EEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred             EEECCCCcccCcCCHHHcCCCCCCEE
Confidence            66666666555666666666665543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.14  E-value=1.1e-10  Score=109.34  Aligned_cols=116  Identities=29%  Similarity=0.383  Sum_probs=94.4

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMF  322 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~  322 (369)
                      |+.+.+.. +.+..++.   ...+++|+.|++++| .+..+|..+ .+++|++|+|++ +.+..+| . +..+++|++|+
T Consensus        57 L~~L~L~~-n~l~~~~~---~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           57 LTQLNLDR-AELTKLQV---DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             CCEEECTT-SCCCEEEC---CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCEEECCC-CccCcccC---CCCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEE
Confidence            33333333 44555543   257899999999999 689999988 899999999999 6678887 4 99999999999


Q ss_pred             eecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccc-cCCCCCCCC
Q 017543          323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGL-FLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i-~~L~~L~~L  368 (369)
                      |++|.|+.+|.. +..+++|++|+|++|+ +..+|.++ ..+++|+.|
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L  177 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTL  177 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEE
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEE
Confidence            999999999876 5899999999999998 77888765 568887765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=1.4e-10  Score=99.92  Aligned_cols=94  Identities=23%  Similarity=0.300  Sum_probs=77.7

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .+.+..+|..  +  ..+|+.|+|++| .+..++ ..+ .+++|++|+|++ |.+..+|.  +..+++|++|+|++|.|+
T Consensus        18 ~n~l~~ip~~--~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N~l~   91 (170)
T 3g39_A           18 GKSLASVPTG--I--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDNQLK   91 (170)
T ss_dssp             TSCCSSCCSC--C--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCcCccCcc--C--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCCccC
Confidence            3556777753  2  478999999999 577774 456 899999999998 56888885  789999999999999999


Q ss_pred             ccCcc-ccCCCCCcEEecccCCCCC
Q 017543          330 ELPSS-IECLYKLLHLDLEDCKSLK  353 (369)
Q Consensus       330 ~LP~~-i~~L~~L~~L~Ls~n~~l~  353 (369)
                      .+|.. +++|++|++|+|++|++..
T Consensus        92 ~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           92 SIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             EeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99875 8999999999999998443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.14  E-value=2.2e-10  Score=101.40  Aligned_cols=97  Identities=31%  Similarity=0.469  Sum_probs=83.2

Q ss_pred             cceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcE
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLH  343 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~  343 (369)
                      ..+|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  +..+++|++|+|++|.|+.+|.. ++.+++|++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCC-CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            568999999999 578888764  899999999999 56778885  78999999999999999998876 689999999


Q ss_pred             EecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |+|++|+ +..+|.. +..+++|+.|
T Consensus       105 L~L~~N~-l~~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A          105 LALNTNQ-LQSLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             EEcCCCc-CcccCHhHhccCCcCCEE
Confidence            9999998 5666665 6778888765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.13  E-value=8.2e-11  Score=120.47  Aligned_cols=98  Identities=23%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCc--ccCccccCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIE--ELPSSIECLY  339 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~  339 (369)
                      +..+++|++|+|++|. +..+ |..+ ++++|++|+|++ +.+..+| . ++++++|++|+|++|.+.  .+|..+++|+
T Consensus        76 ~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~  153 (606)
T 3vq2_A           76 WHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT  153 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred             hhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence            4566666777776663 4444 5555 666677777766 3444554 3 666667777777766665  4566666777


Q ss_pred             CCcEEecccCCCCCcCCccccCCCCC
Q 017543          340 KLLHLDLEDCKSLKSLPSGLFLCRNK  365 (369)
Q Consensus       340 ~L~~L~Ls~n~~l~~lP~~i~~L~~L  365 (369)
                      +|++|++++|++.+..|..+..+.+|
T Consensus       154 ~L~~L~Ls~n~l~~~~~~~~~~l~~L  179 (606)
T 3vq2_A          154 NLVHVDLSYNYIQTITVNDLQFLREN  179 (606)
T ss_dssp             TCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred             CCCEEEccCCcceecChhhhhhhhcc
Confidence            77777777666444444445444433

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.13  E-value=1e-10  Score=119.56  Aligned_cols=119  Identities=21%  Similarity=0.252  Sum_probs=96.4

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      ++.+.+ +.+.++.++... +..+++|++|+|++| .+..+|+. + +|++|++|+|++ +.++.+|.  +++|++|++|
T Consensus        54 ~~~LdL-s~N~i~~l~~~~-f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           54 TKNLDL-SFNPLRHLGSYS-FFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             CCEEEC-TTSCCCEECTTT-TTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-CCCCEECGGGGTTCTTCCEE
T ss_pred             CCEEEe-eCCCCCCCCHHH-HhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccC-CcCCCCCHHHhcCCCCCCEE
Confidence            344444 346677776533 578999999999999 58888775 5 899999999998 56888885  8999999999


Q ss_pred             EeecCCCcccCcc-ccCCCCCcEEecccCCCCC-cCCccccCCCCCCCC
Q 017543          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLK-SLPSGLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~-~lP~~i~~L~~L~~L  368 (369)
                      +|++|.|+.+|.. +++|++|++|+|++|.+.. .+|..+..+++|++|
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L  178 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL  178 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence            9999999998864 8999999999999998433 568888888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.13  E-value=1.8e-10  Score=106.57  Aligned_cols=100  Identities=33%  Similarity=0.461  Sum_probs=84.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+++|++|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.++.+|.. ++++++
T Consensus        81 l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           81 LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVE-NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCC-CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            678899999999999 577777764  899999999999 45667775  89999999999999999988876 589999


Q ss_pred             CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |++|++++|+ +..+|.. +..+++|+.|
T Consensus       159 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  186 (272)
T 3rfs_A          159 LTELDLSYNQ-LQSLPEGVFDKLTQLKDL  186 (272)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CCEEECCCCC-cCccCHHHhcCCccCCEE
Confidence            9999999998 4555554 5778888765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.12  E-value=1.1e-10  Score=108.44  Aligned_cols=100  Identities=26%  Similarity=0.339  Sum_probs=48.7

Q ss_pred             ccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+++|+.|++++|. +..++ ..+ .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+.+|.. ++.+++
T Consensus       101 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  178 (285)
T 1ozn_A          101 FHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (285)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccc
Confidence            3445555555555552 33332 223 455555555555 33444442  45555555555555555555443 455555


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      |++|+|++|++.+..|..+..+++|+.
T Consensus       179 L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          179 LDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCEEECCCCcccccCHhHccCcccccE
Confidence            555555555533333555555544443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.12  E-value=2.9e-10  Score=97.91  Aligned_cols=93  Identities=25%  Similarity=0.371  Sum_probs=76.1

Q ss_pred             eeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEeccc
Q 017543          272 LVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLED  348 (369)
Q Consensus       272 L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~  348 (369)
                      .+.|++++| .+..+|..+ ..+|++|+|++ +.+..++ . ++.+++|++|+|++|+|+.+|.. ++.|++|++|+|++
T Consensus        11 ~~~l~~s~n-~l~~ip~~~-~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGK-SLASVPTGI-PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTS-CCSSCCSCC-CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCC-CcCccCccC-CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            567899998 588898776 47889999998 5676774 4 88999999999999999988876 48999999999999


Q ss_pred             CCCCCcCCcc-ccCCCCCCCC
Q 017543          349 CKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       349 n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |+ +..+|.. +..+++|+.|
T Consensus        88 N~-l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           88 NQ-LKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             SC-CCCCCTTTTTTCTTCCEE
T ss_pred             Cc-cCEeCHHHhcCCCCCCEE
Confidence            88 6667664 7778888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.12  E-value=1.8e-10  Score=101.18  Aligned_cols=101  Identities=22%  Similarity=0.290  Sum_probs=83.3

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~  329 (369)
                      .+.+..++....+..+++|+.|+|++| .+..+ |..+ .+++|++|+|++ +.+..+| . ++.+++|++|+|++|.|+
T Consensus        38 ~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~  115 (192)
T 1w8a_A           38 DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQIS  115 (192)
T ss_dssp             SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred             CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence            345666655444678999999999999 47666 6667 899999999999 5566666 4 899999999999999999


Q ss_pred             cc-CccccCCCCCcEEecccCCCCCcCC
Q 017543          330 EL-PSSIECLYKLLHLDLEDCKSLKSLP  356 (369)
Q Consensus       330 ~L-P~~i~~L~~L~~L~Ls~n~~l~~lP  356 (369)
                      .+ |..++.+++|++|+|++|++.+..|
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A          116 CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            65 7789999999999999999766554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.11  E-value=1.3e-10  Score=107.45  Aligned_cols=118  Identities=24%  Similarity=0.249  Sum_probs=82.4

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+....+ .+..++.. .+..+++|+.|++++| .+..++. .+ .+++|++|++++ +.+..++.  ++++++|++|
T Consensus        54 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           54 LQVLDLSRC-EIQTIEDG-AYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             CSEEECTTC-CCCEECTT-TTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEE
T ss_pred             CcEEECCCC-cCCccCHH-HccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCC-CCccccCchhcccCCCCCEE
Confidence            444444433 34444432 2567888888888888 4666664 45 788899999888 45666664  8888889999


Q ss_pred             EeecCCCcc--cCccccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543          322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       322 ~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      +|++|.++.  +|..++++++|++|+|++|++.+..|..+..+++|..
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  177 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  177 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc
Confidence            999888875  6888888899999999888844444455665655553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.10  E-value=1.2e-10  Score=115.51  Aligned_cols=102  Identities=22%  Similarity=0.286  Sum_probs=63.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-CccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL-PSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~L~  342 (369)
                      +..+++|+.|++++|..++.+|...  .+++|++|+|++ +.+..+|.+..+++|++|+|++|.|+.+ |..++++++|+
T Consensus       167 ~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  245 (452)
T 3zyi_A          167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLK  245 (452)
T ss_dssp             TTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCC
T ss_pred             HhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-CcccccccccccccccEEECcCCcCcccCcccccCccCCC
Confidence            3455666666666654555555543  566666666666 4455666666666777777777766654 45567777777


Q ss_pred             EEecccCCCCCcCCccccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+|++|++.+..|..+..+++|+.|
T Consensus       246 ~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          246 KLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             EEEeCCCcCceECHHHhcCCCCCCEE
Confidence            77777776544455566666666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.10  E-value=1.2e-10  Score=114.99  Aligned_cols=101  Identities=21%  Similarity=0.323  Sum_probs=55.6

Q ss_pred             cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCccc-CccccCCCCCcE
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEEL-PSSIECLYKLLH  343 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~L~~  343 (369)
                      ..+++|+.|+|++|+.++.+|...  .+++|++|+|++ +.+..+|.+..+++|+.|+|++|.|+.+ |..+..+++|+.
T Consensus       157 ~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccccCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            345555555555544455554432  555566666665 3455555555566666666666666544 445566666666


Q ss_pred             EecccCCCCCcCCccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|++.+..|..+..+++|+.|
T Consensus       236 L~L~~n~l~~~~~~~~~~l~~L~~L  260 (440)
T 3zyj_A          236 LWMIQSQIQVIERNAFDNLQSLVEI  260 (440)
T ss_dssp             EECTTCCCCEECTTSSTTCTTCCEE
T ss_pred             EECCCCceeEEChhhhcCCCCCCEE
Confidence            6666666444444455555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.09  E-value=4.8e-11  Score=123.76  Aligned_cols=106  Identities=16%  Similarity=0.245  Sum_probs=74.9

Q ss_pred             CCCCCCcc--ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC--cCCC-CCCC------CCCCEEEeecCC
Q 017543          260 TPNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSA------ANIEEMFLNGTA  327 (369)
Q Consensus       260 ~p~~~~~~--~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~--~lP~-i~~L------~~L~~L~Ls~n~  327 (369)
                      +|..  ++  ++++|++|+|++|...+.+|..+ ++++|++|+|++|..+.  .+|. +++|      ++|++|+|++|.
T Consensus       239 ip~~--l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          239 KTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTSC--CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             Cchh--hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            5544  55  77777777777776566777777 77777777777755244  4775 6665      777777777777


Q ss_pred             CcccCc--cccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          328 IEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       328 l~~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++.+|.  .++++++|++|++++|++.+.+| .+..+++|+.|
T Consensus       317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L  358 (636)
T 4eco_A          317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASL  358 (636)
T ss_dssp             CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEE
T ss_pred             CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEE
Confidence            777777  77777777777777777555777 66666666554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=3.3e-10  Score=104.49  Aligned_cols=96  Identities=21%  Similarity=0.235  Sum_probs=50.4

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      +..+++|+.|++++| .+..+|.... .+|+.|+|++ +.+..+|.++.+++|+.|+|++|.|+.+| .++.+++|++|+
T Consensus        81 l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~-N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~  156 (263)
T 1xeu_A           81 LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDN-NELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLD  156 (263)
T ss_dssp             GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCS-SCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEE
T ss_pred             hccCCCCCEEECCCC-ccCCcCcccc-CcccEEEccC-CccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEE
Confidence            344555555555555 3444443223 5555555555 34444544555666666666666666554 455666666666


Q ss_pred             cccCCCCCcCCccccCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      |++|+ +..+ ..+..+++|+.
T Consensus       157 L~~N~-i~~~-~~l~~l~~L~~  176 (263)
T 1xeu_A          157 LHGNE-ITNT-GGLTRLKKVNW  176 (263)
T ss_dssp             CTTSC-CCBC-TTSTTCCCCCE
T ss_pred             CCCCc-Ccch-HHhccCCCCCE
Confidence            66655 3333 34445555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.09  E-value=8.3e-11  Score=111.23  Aligned_cols=100  Identities=13%  Similarity=0.152  Sum_probs=80.7

Q ss_pred             ccccceeeEEeecCCCCCCCcC-ccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLP-AGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP-~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      +..+++|+.|++++| .+..++ ..+  .+++|++|+|++ +.+..+|....+++|++|+|++|.|+.+|..++.+++|+
T Consensus       140 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~  217 (317)
T 3o53_A          140 EGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT  217 (317)
T ss_dssp             TGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred             hhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCC-CcCcccccccccccCCEEECCCCcCCcchhhhcccCccc
Confidence            566888999999988 466543 444  578899999998 557777776668899999999999998888888899999


Q ss_pred             EEecccCCCCCcCCccccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+|++|+ +..+|..+..+++|+.|
T Consensus       218 ~L~L~~N~-l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          218 WISLRNNK-LVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             EEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred             EEECcCCc-ccchhhHhhcCCCCCEE
Confidence            99999887 66888888888887765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.09  E-value=2.3e-10  Score=107.91  Aligned_cols=97  Identities=20%  Similarity=0.363  Sum_probs=68.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|++++| .+..+| .+ .+++|++|+|++ +.+..+|.++.+++|++|+|++|.+..+|. ++.+++|++|
T Consensus        81 ~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  156 (308)
T 1h6u_A           81 LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTS-TQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYL  156 (308)
T ss_dssp             GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTT-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEE
T ss_pred             HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCC-CCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEE
Confidence            456677777777777 366665 34 677777777777 446666667777777777777777777765 7777778888


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|+ +..+|. +..+++|+.|
T Consensus       157 ~l~~n~-l~~~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          157 SIGNAQ-VSDLTP-LANLSKLTTL  178 (308)
T ss_dssp             ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             EccCCc-CCCChh-hcCCCCCCEE
Confidence            887776 555665 6666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.08  E-value=5.2e-11  Score=107.76  Aligned_cols=118  Identities=15%  Similarity=0.206  Sum_probs=77.4

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecC-CCCCCCcCcc-c-cccCccEEEccCCCCCCcCCCCCCCCCCC---
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPDISSAANIE---  319 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~-n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~---  319 (369)
                      |+.+....+..++.++.. .+..+++|+.|++++ | .+..+|.. + .+++|++|+|++ +.+..+|.++.+++|+   
T Consensus        57 L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~~~~l~~L~~L~  133 (239)
T 2xwt_C           57 ISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKFLGIFN-TGLKMFPDLTKVYSTDIFF  133 (239)
T ss_dssp             CCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCEEEEEE-ECCCSCCCCTTCCBCCSEE
T ss_pred             CcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCEEeCCC-CCCcccccccccccccccc
Confidence            333434333225555432 245677788888877 5 57777654 3 777888888887 4566677777777776   


Q ss_pred             EEEeecC-CCcccCcc-ccCCCCCc-EEecccCCCCCcCCccccCCCCCCC
Q 017543          320 EMFLNGT-AIEELPSS-IECLYKLL-HLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       320 ~L~Ls~n-~l~~LP~~-i~~L~~L~-~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      +|++++| .++.+|.. ++.+++|+ +|++++|+ +..+|..++..++|+.
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~  183 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDA  183 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEE
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCE
Confidence            8888888 77777764 67788888 88888777 5577776655454443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.08  E-value=1.3e-11  Score=127.97  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCC--CcCccc-cc------cCccEEEccCCCCCCcCCC---C
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HL------EFLKELDLSGCSKLKRLPD---I  312 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~--~lP~~i-~L------~~L~~L~Ls~~~~l~~lP~---i  312 (369)
                      .|+.+.+..|.....+|..  ++++++|+.|++++|..+.  .+|..+ .|      ++|++|+|++| .+..+|.   +
T Consensus       250 ~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l  326 (636)
T 4eco_A          250 DLTDVEVYNCPNLTKLPTF--LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSL  326 (636)
T ss_dssp             TCCEEEEECCTTCSSCCTT--TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHH
T ss_pred             CCCEEEecCCcCCccChHH--HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhh
Confidence            3455555566666677754  7899999999999995255  599888 76      99999999995 5669997   8


Q ss_pred             CCCCCCCEEEeecCCCc-ccCccccCCCCCcEEecccCCCCCcCCccccCCCC-CCCC
Q 017543          313 SSAANIEEMFLNGTAIE-ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN-KCRI  368 (369)
Q Consensus       313 ~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~-L~~L  368 (369)
                      +++++|++|+|++|.+. .+| .++++++|++|+|++|+ +..+|..+..+++ |+.|
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L  382 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENL  382 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEE
T ss_pred             ccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEE
Confidence            99999999999999999 999 99999999999999998 6699999999988 8776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.08  E-value=1.7e-10  Score=116.90  Aligned_cols=116  Identities=24%  Similarity=0.279  Sum_probs=77.9

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+....+ .+..++. ..+..+++|++|+|++| .+..+| ..+ .+++|++|++++ +.+..+|.  +++|++|++|
T Consensus        54 L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L  129 (570)
T 2z63_A           54 LQVLDLSRC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKEL  129 (570)
T ss_dssp             CCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCSCTTCTTCCEE
T ss_pred             ceEEECCCC-cCCccCc-ccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccccc-cccccCCCccccccccccEE
Confidence            344444443 3444432 22567788888888887 466665 345 788888888887 45667764  7788888888


Q ss_pred             EeecCCCcc--cCccccCCCCCcEEecccCCCCCcCCccccCCCCC
Q 017543          322 FLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNK  365 (369)
Q Consensus       322 ~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L  365 (369)
                      +|++|.++.  +|..+++|++|++|++++|++.+..|..+..+++|
T Consensus       130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  175 (570)
T 2z63_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM  175 (570)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred             ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence            888887774  67888888888888888887444445566666555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.07  E-value=2.1e-10  Score=107.50  Aligned_cols=101  Identities=25%  Similarity=0.332  Sum_probs=82.8

Q ss_pred             ccccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCc-cccCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPS-SIECLY  339 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~  339 (369)
                      +..+++|+.|++++|. +..  +|..+ .+++|++|+|++| .+..+ |. ++.+++|++|+|++|.++.+|. .++.++
T Consensus       146 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  223 (306)
T 2z66_A          146 FNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN  223 (306)
T ss_dssp             TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred             cccCcCCCEEECCCCc-cccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence            5678899999999984 553  77777 8999999999985 45555 55 8899999999999999988765 678899


Q ss_pred             CCcEEecccCCCCCcCCccccCCC-CCCCC
Q 017543          340 KLLHLDLEDCKSLKSLPSGLFLCR-NKCRI  368 (369)
Q Consensus       340 ~L~~L~Ls~n~~l~~lP~~i~~L~-~L~~L  368 (369)
                      +|++|+|++|++.+..|..+..++ +|+.|
T Consensus       224 ~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L  253 (306)
T 2z66_A          224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFL  253 (306)
T ss_dssp             TCCEEECTTSCCCBCSSSSCCCCCTTCCEE
T ss_pred             cCCEeECCCCCCcccCHHHHHhhhccCCEE
Confidence            999999999997777888888774 77654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.07  E-value=2.8e-10  Score=98.14  Aligned_cols=107  Identities=28%  Similarity=0.469  Sum_probs=87.9

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      +.+..+|..    ..++|+.|++++| .+..+|...  .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+.
T Consensus        17 ~~l~~~p~~----~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~N~l~~   90 (177)
T 2o6r_A           17 KGLTSVPTG----IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLHENKLQS   90 (177)
T ss_dssp             SCCSSCCTT----CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCCCC----CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECCCCCccc
Confidence            335555532    3468999999999 578888764  799999999999 56788885  7999999999999999999


Q ss_pred             cCcc-ccCCCCCcEEecccCCCCCcCCccc-cCCCCCCCC
Q 017543          331 LPSS-IECLYKLLHLDLEDCKSLKSLPSGL-FLCRNKCRI  368 (369)
Q Consensus       331 LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i-~~L~~L~~L  368 (369)
                      +|.. ++.+++|++|+|++|+ +..+|..+ ..+++|++|
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L  129 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKI  129 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             cCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEE
Confidence            8876 6899999999999998 66788765 668888765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.07  E-value=1e-10  Score=117.59  Aligned_cols=100  Identities=13%  Similarity=0.129  Sum_probs=82.6

Q ss_pred             ccccceeeEEeecCCCCCCC-cCccc--cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKS-LPAGI--HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~-lP~~i--~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      ++.+++|+.|+|++|. +.. .|..+  .+++|+.|+|++ +.+..+|.+..+++|++|+|++|.|+.+|..++.+++|+
T Consensus       140 ~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~  217 (487)
T 3oja_A          140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVT  217 (487)
T ss_dssp             GGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTT-SCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCS
T ss_pred             hcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCC-CccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCcc
Confidence            5678899999999985 554 55555  589999999998 557777776678999999999999999988899999999


Q ss_pred             EEecccCCCCCcCCccccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+|++|. +..+|..+..+++|..|
T Consensus       218 ~L~Ls~N~-l~~lp~~l~~l~~L~~L  242 (487)
T 3oja_A          218 WISLRNNK-LVLIEKALRFSQNLEHF  242 (487)
T ss_dssp             EEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred             EEEecCCc-CcccchhhccCCCCCEE
Confidence            99999988 66789888888887765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.07  E-value=2e-10  Score=106.10  Aligned_cols=91  Identities=29%  Similarity=0.421  Sum_probs=39.9

Q ss_pred             cccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCc--CCC-CCCCCCCCEEEeecCCCcccCc-cccCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKR--LPD-ISSAANIEEMFLNGTAIEELPS-SIECLYK  340 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~  340 (369)
                      ..+++|+.|++++| .+..++. .+ .+++|++|+|++| .+..  +|. ++++++|++|+|++|.++.+|. .+..+.+
T Consensus        97 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  174 (276)
T 2z62_A           97 SGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ  174 (276)
T ss_dssp             TTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred             cCCccccEEECCCC-CccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhh
Confidence            34445555555554 2333333 23 4555555555542 2322  343 4455555555555555544432 2333333


Q ss_pred             Cc----EEecccCCCCCcCCcccc
Q 017543          341 LL----HLDLEDCKSLKSLPSGLF  360 (369)
Q Consensus       341 L~----~L~Ls~n~~l~~lP~~i~  360 (369)
                      |+    .|++++|+ +..+|..+.
T Consensus       175 L~~l~l~L~ls~n~-l~~~~~~~~  197 (276)
T 2z62_A          175 MPLLNLSLDLSLNP-MNFIQPGAF  197 (276)
T ss_dssp             CTTCCEEEECCSSC-CCEECTTSS
T ss_pred             ccccceeeecCCCc-ccccCcccc
Confidence            33    44555544 334444333

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.06  E-value=1.8e-10  Score=111.70  Aligned_cols=115  Identities=15%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+....+ .+..++.. .+..+++|+.|+|++| .+..+|+. + .+++|++|+|++ +.+..+|.  ++++++|++|
T Consensus        71 L~~L~L~~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           71 VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CcEEECCCC-cccccChh-hccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCC-CccCcCCHHHhcCCCCCcEE
Confidence            444444333 34444432 2567888888888888 46666554 4 788888888888 56777875  5788888888


Q ss_pred             EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      +|++|.+..+|. .++++++|++|++++|+ +..+|  +..+++|++
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~~  190 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFH  190 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCSE
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccce
Confidence            888888886644 47888888888888887 55554  344455544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.06  E-value=1.7e-10  Score=118.67  Aligned_cols=115  Identities=15%  Similarity=0.218  Sum_probs=76.6

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L  321 (369)
                      |+.+.+..+ .+..++.. .+..+++|+.|+|++| .+..+|+..  .+++|++|+|++ +.+..+|.  ++++++|++|
T Consensus        77 L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L  152 (597)
T 3oja_B           77 VELLNLNDL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTL  152 (597)
T ss_dssp             CSEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred             CcEEECCCC-CCCCCChH-HhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEE
Confidence            444444333 34444332 2567888888888888 466666543  788888888887 45667775  5788888888


Q ss_pred             EeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543          322 FLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       322 ~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      +|++|.|..+|. .++++++|++|+|++|. +..+|  +..+++|.+
T Consensus       153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~  196 (597)
T 3oja_B          153 SMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFH  196 (597)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSE
T ss_pred             EeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhh
Confidence            888888876654 57888888888888887 45554  333455443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.06  E-value=3.8e-10  Score=108.06  Aligned_cols=120  Identities=21%  Similarity=0.180  Sum_probs=87.7

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE  320 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~  320 (369)
                      .++.+.... +.+..++.. .+..+++|+.|++++| .+..++. .+ .+++|++|+|++ +.+..+|.  ++++++|++
T Consensus        53 ~L~~L~l~~-n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~  128 (353)
T 2z80_A           53 AVKSLDLSN-NRITYISNS-DLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTF  128 (353)
T ss_dssp             TCCEEECTT-SCCCEECTT-TTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSE
T ss_pred             cCcEEECCC-CcCcccCHH-HhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCE
Confidence            344444444 345555442 2567888999999888 4666654 46 788999999988 56777774  788889999


Q ss_pred             EEeecCCCcccCc--cccCCCCCcEEecccCCCCCcC-CccccCCCCCCCC
Q 017543          321 MFLNGTAIEELPS--SIECLYKLLHLDLEDCKSLKSL-PSGLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n~l~~LP~--~i~~L~~L~~L~Ls~n~~l~~l-P~~i~~L~~L~~L  368 (369)
                      |+|++|.++.+|.  .++++++|++|++++|+.++.+ |..+..+++|++|
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L  179 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL  179 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence            9999998888887  6788899999999888546665 4567777776654

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.06  E-value=4.6e-10  Score=98.74  Aligned_cols=95  Identities=22%  Similarity=0.329  Sum_probs=80.9

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .+.+..+|.  .+..+++|+.|+|++| .+..++.. + .+++|++|+|++ +.+..+|.  ++.+++|++|+|++|.|+
T Consensus        40 ~n~i~~ip~--~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N~l~  115 (193)
T 2wfh_A           40 GNQFTLVPK--ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGNDIS  115 (193)
T ss_dssp             SSCCCSCCG--GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCcCchhHH--HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCCCCCC
Confidence            355667763  3678999999999999 58887765 5 899999999999 56777774  999999999999999999


Q ss_pred             ccCcc-ccCCCCCcEEecccCCCC
Q 017543          330 ELPSS-IECLYKLLHLDLEDCKSL  352 (369)
Q Consensus       330 ~LP~~-i~~L~~L~~L~Ls~n~~l  352 (369)
                      .+|.. +..+++|++|+|++|+..
T Consensus       116 ~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          116 VVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eeChhhhhcCccccEEEeCCCCee
Confidence            99885 789999999999998843

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.05  E-value=3.6e-10  Score=106.61  Aligned_cols=113  Identities=18%  Similarity=0.289  Sum_probs=91.5

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls  324 (369)
                      |+.+.... +.+..++   .+..+++|+.|++++| .+..+|. + .+++|+.|+|++ +.+..+|.++.+++|++|+|+
T Consensus        87 L~~L~L~~-n~l~~~~---~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~l~  159 (308)
T 1h6u_A           87 ITELELSG-NPLKNVS---AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDL-NQITNISPLAGLTNLQYLSIG  159 (308)
T ss_dssp             CCEEECCS-CCCSCCG---GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEECC
T ss_pred             CCEEEccC-CcCCCch---hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCC-CccCcCccccCCCCccEEEcc
Confidence            33343333 3455554   2678899999999999 5888876 6 899999999998 567788878899999999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|.++.+|. ++.+++|++|++++|+ +..+|. +..+++|++|
T Consensus       160 ~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L  200 (308)
T 1h6u_A          160 NAQVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEV  200 (308)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEE
T ss_pred             CCcCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEE
Confidence            999999887 9999999999999998 667775 7778888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.04  E-value=3.2e-10  Score=106.15  Aligned_cols=97  Identities=23%  Similarity=0.337  Sum_probs=78.6

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|++++| .+..++ .+ .+++|+.|+|++ +.+..++.++.+++|+.|+|++|.|+.+|. ++.+++|++|
T Consensus       108 l~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L  183 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL  183 (291)
T ss_dssp             GTTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCS-SCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             hccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccC-CcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEE
Confidence            567888889999888 577775 45 888899999988 567777668888999999999999988876 8889999999


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|. +..+|. +..+++|+.|
T Consensus       184 ~L~~N~-i~~l~~-l~~l~~L~~L  205 (291)
T 1h6t_A          184 YLSKNH-ISDLRA-LAGLKNLDVL  205 (291)
T ss_dssp             ECCSSC-CCBCGG-GTTCTTCSEE
T ss_pred             ECCCCc-CCCChh-hccCCCCCEE
Confidence            999887 677775 7777777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.04  E-value=4.2e-10  Score=103.79  Aligned_cols=77  Identities=26%  Similarity=0.337  Sum_probs=39.6

Q ss_pred             ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~  348 (369)
                      .+|+.|++++| .+..+| .+ .+++|+.|+|++ +.+..+|.++.+++|++|+|++|.|..+ ..++.+++|++|++++
T Consensus       106 ~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~  181 (263)
T 1xeu_A          106 ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTG  181 (263)
T ss_dssp             SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEE
T ss_pred             CcccEEEccCC-ccCCCh-hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCC
Confidence            45555555555 344443 23 555555555555 3344444455555555555555555544 3455555555555555


Q ss_pred             CC
Q 017543          349 CK  350 (369)
Q Consensus       349 n~  350 (369)
                      |+
T Consensus       182 N~  183 (263)
T 1xeu_A          182 QK  183 (263)
T ss_dssp             EE
T ss_pred             Cc
Confidence            54

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=115.33  Aligned_cols=95  Identities=17%  Similarity=0.107  Sum_probs=54.2

Q ss_pred             ceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          270 NTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      ++|+.|+|++| .+..+++ .+ .+++|++|+|++| .+..+ |. +++|++|++|+|++|.|+.+|..  .+++|++|+
T Consensus        21 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~   96 (520)
T 2z7x_B           21 QKTTILNISQN-YISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD   96 (520)
T ss_dssp             TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred             ccccEEECCCC-cccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence            55666666666 3444442 34 5666666666663 33333 43 66666666666666666666655  566666666


Q ss_pred             cccCCCCC-cCCccccCCCCCCCC
Q 017543          346 LEDCKSLK-SLPSGLFLCRNKCRI  368 (369)
Q Consensus       346 Ls~n~~l~-~lP~~i~~L~~L~~L  368 (369)
                      |++|++.+ .+|..++.+++|++|
T Consensus        97 L~~N~l~~~~~p~~~~~l~~L~~L  120 (520)
T 2z7x_B           97 LSFNAFDALPICKEFGNMSQLKFL  120 (520)
T ss_dssp             CCSSCCSSCCCCGGGGGCTTCCEE
T ss_pred             ccCCccccccchhhhccCCcceEE
Confidence            66666333 355666666665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.04  E-value=3e-10  Score=112.23  Aligned_cols=120  Identities=23%  Similarity=0.365  Sum_probs=93.1

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcC-CC-CCCCCCCCEEE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMF  322 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~  322 (369)
                      .|+.+.+..++.+..++.. .+..+++|+.|+|++| .+..+|....+++|+.|+|++| .+..+ |. +..+++|+.|+
T Consensus       161 ~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  237 (440)
T 3zyj_A          161 SLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLW  237 (440)
T ss_dssp             TCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             ccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-ccCccChhhhccCccCCEEE
Confidence            3444445455555555542 3578999999999999 6889986338999999999995 56666 45 99999999999


Q ss_pred             eecCCCccc-CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |++|.|+.+ |..++++++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus       238 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          238 MIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             CTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEE
T ss_pred             CCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEE
Confidence            999999976 4568999999999999998 5566654 5667777765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.03  E-value=3.1e-10  Score=112.48  Aligned_cols=120  Identities=21%  Similarity=0.329  Sum_probs=91.7

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcC-CC-CCCCCCCCEEE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMF  322 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~  322 (369)
                      .|+.+.+..++.+..++.. .+..+++|+.|+|++| .+..+|....+++|+.|+|++| .+..+ |. +.++++|++|+
T Consensus       172 ~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  248 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLW  248 (452)
T ss_dssp             TCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEE
T ss_pred             cccEEeCCCCCCccccChh-hccCCCCCCEEECCCC-cccccccccccccccEEECcCC-cCcccCcccccCccCCCEEE
Confidence            3444445555556655542 3567899999999999 5888875338999999999995 45555 45 99999999999


Q ss_pred             eecCCCccc-CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          323 LNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |++|.|..+ |..++.+++|++|+|++|+ +..+|.. +..+++|+.|
T Consensus       249 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  295 (452)
T 3zyi_A          249 VMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVEL  295 (452)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEE
T ss_pred             eCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEE
Confidence            999999866 5668999999999999998 5666654 5667777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.03  E-value=4e-10  Score=105.54  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=87.1

Q ss_pred             ccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC-cCCC-CCCCCCCCEEEeecCCCccc
Q 017543          255 NIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK-RLPD-ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       255 ~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~-~lP~-i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      +.+..++....+..+++|+.|++++|......|..+ .+++|++|+|++|...+ .+|. ++.+++|++|+|++|.++.+
T Consensus       111 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  190 (306)
T 2z66_A          111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL  190 (306)
T ss_dssp             SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred             CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCc
Confidence            334555432346788999999999995333445556 89999999999954333 3787 99999999999999999977


Q ss_pred             -CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          332 -PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       332 -P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                       |..++.+++|++|+|++|++.+..+..+..+++|+.|
T Consensus       191 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          191 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             CHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence             6778999999999999999444344467778888765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.03  E-value=5.5e-10  Score=104.50  Aligned_cols=97  Identities=23%  Similarity=0.331  Sum_probs=71.6

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|++++| .+..+|. + .+++|++|+|++ +.+..+|.++.+++|+.|+|++|.++.+ ..++.+++|++|
T Consensus        86 l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~-n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L  161 (291)
T 1h6t_A           86 LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  161 (291)
T ss_dssp             GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTT-SCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEE
T ss_pred             cccCCCCCEEECCCC-cCCCChh-hccCCCCCEEECCC-CcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEE
Confidence            556777888888877 4666664 5 778888888887 4566666677788888888888888877 467888888888


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++++|+ +..+|. +..+++|+.|
T Consensus       162 ~L~~N~-l~~~~~-l~~l~~L~~L  183 (291)
T 1h6t_A          162 SLEDNQ-ISDIVP-LAGLTKLQNL  183 (291)
T ss_dssp             ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             EccCCc-cccchh-hcCCCccCEE
Confidence            888887 555655 7777777655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=4.2e-10  Score=107.37  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=71.4

Q ss_pred             cccCCCCCCCccccceeeEEeecC-CCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRD-CKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~-n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      .+..+|.   ++.+.+|+.|+|++ | .+..+|.. + .|++|+.|+|++| .+..+|.  +++|++|++|+|++|+|+.
T Consensus        20 ~l~~ip~---l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~   94 (347)
T 2ifg_A           20 ALDSLHH---LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFNALES   94 (347)
T ss_dssp             CCTTTTT---SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSSCCSC
T ss_pred             CCCccCC---CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCCccce
Confidence            4666664   67788899999986 6 68888754 5 8899999999984 5666664  7889999999999999998


Q ss_pred             cCccccCCCCCcEEecccCCCC
Q 017543          331 LPSSIECLYKLLHLDLEDCKSL  352 (369)
Q Consensus       331 LP~~i~~L~~L~~L~Ls~n~~l  352 (369)
                      +|..+.....|+.|+|.+|++.
T Consensus        95 ~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           95 LSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             CCSTTTCSCCCCEEECCSSCCC
T ss_pred             eCHHHcccCCceEEEeeCCCcc
Confidence            8887654444999999988743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.02  E-value=2.6e-10  Score=116.75  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=66.2

Q ss_pred             ccccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      +..+++|+.|++++|. +..  +|..+ .+++|+.|+|++|...+..|. ++.+++|++|+|++|.+..+ |..++++++
T Consensus       444 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  522 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS  522 (606)
T ss_dssp             TTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred             hcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence            4556667777777763 332  56556 677777777777543333344 77777777777777777754 666777777


Q ss_pred             CcEEecccCCCCCcCCccccCCC-CCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCR-NKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~-~L~~L  368 (369)
                      |++|+|++|+ +..+|..+..++ +|+.|
T Consensus       523 L~~L~l~~N~-l~~~p~~~~~l~~~L~~l  550 (606)
T 3vq2_A          523 LSTLDCSFNR-IETSKGILQHFPKSLAFF  550 (606)
T ss_dssp             CCEEECTTSC-CCCEESCGGGSCTTCCEE
T ss_pred             CCEEECCCCc-CcccCHhHhhhcccCcEE
Confidence            7777777777 557777766665 35543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.02  E-value=2.9e-10  Score=112.17  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C--CCCCCCCCEEEeecCCCccc-Ccc-ccCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D--ISSAANIEEMFLNGTAIEEL-PSS-IECL  338 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~--i~~L~~L~~L~Ls~n~l~~L-P~~-i~~L  338 (369)
                      +..+++|++|+|++|. +..+ |..+ .+++|++|+|++|...+.+| .  ++.+++|++|+|++|.+..+ |.. ++++
T Consensus        75 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l  153 (455)
T 3v47_A           75 FRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM  153 (455)
T ss_dssp             TTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred             ccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence            4455666666666663 3333 4444 56666666666643322222 2  55666666666666666544 433 5566


Q ss_pred             CCCcEEecccCCCCCcCCccccC
Q 017543          339 YKLLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       339 ~~L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      ++|++|++++|++.+..|..+..
T Consensus       154 ~~L~~L~L~~n~l~~~~~~~l~~  176 (455)
T 3v47_A          154 RRFHVLDLTFNKVKSICEEDLLN  176 (455)
T ss_dssp             TTCCEEECTTCCBSCCCTTTSGG
T ss_pred             CcccEEeCCCCcccccChhhhhc
Confidence            66666666666644444444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.01  E-value=3.3e-10  Score=111.78  Aligned_cols=100  Identities=25%  Similarity=0.288  Sum_probs=72.1

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      +..+++|+.|++++|. +..+ |..+ .+++|++|+|++| .+..++ . ++.+++|++|+|++|.|+.+ |..++.+++
T Consensus       295 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  372 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN  372 (455)
T ss_dssp             TTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence            5677888888888884 5555 4455 7888888888874 455554 4 77888888888888888765 667788888


Q ss_pred             CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |++|+|++|+ +..+|.. +..+++|+.|
T Consensus       373 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  400 (455)
T 3v47_A          373 LKELALDTNQ-LKSVPDGIFDRLTSLQKI  400 (455)
T ss_dssp             CCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             ccEEECCCCc-cccCCHhHhccCCcccEE
Confidence            8888888877 5556654 4567777654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=8.3e-11  Score=126.00  Aligned_cols=105  Identities=21%  Similarity=0.317  Sum_probs=73.9

Q ss_pred             CCCCCCcc--ccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCC--cCCC-CCCCC-------CCCEEEeecC
Q 017543          260 TPNPSFSQ--HLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLK--RLPD-ISSAA-------NIEEMFLNGT  326 (369)
Q Consensus       260 ~p~~~~~~--~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~--~lP~-i~~L~-------~L~~L~Ls~n  326 (369)
                      +|..  ++  .+++|+.|+|++|...+.+|..+ +|++|+.|+|++|..+.  .+|. +++|+       +|++|+|++|
T Consensus       481 iP~~--l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEE--LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSC--CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChh--hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            5544  45  78888888888886677888777 78888888888865344  4664 54443       7777777777


Q ss_pred             CCcccCc--cccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          327 AIEELPS--SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       327 ~l~~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+..+|.  .+++|++|++|+|++|+ +..|| .+..+++|+.|
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L  600 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDL  600 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEE
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEE
Confidence            7777777  77777777777777776 44777 66666666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.01  E-value=7.9e-10  Score=112.53  Aligned_cols=81  Identities=27%  Similarity=0.307  Sum_probs=37.4

Q ss_pred             cccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC--ccccCCCCCc
Q 017543          267 QHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP--SSIECLYKLL  342 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP--~~i~~L~~L~  342 (369)
                      ..+++|++|+|++| .+..+ |..+ .+++|++|+|++ +.+..+|.. .+++|++|+|++|.++.+|  ..+++|++|+
T Consensus        73 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~  149 (562)
T 3a79_B           73 SFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLT  149 (562)
T ss_dssp             TTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT-SCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCC
T ss_pred             ccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCccc
Confidence            34444555555554 23333 2223 445555555554 334444433 4445555555555544332  3445555555


Q ss_pred             EEecccCC
Q 017543          343 HLDLEDCK  350 (369)
Q Consensus       343 ~L~Ls~n~  350 (369)
                      +|++++|+
T Consensus       150 ~L~L~~n~  157 (562)
T 3a79_B          150 FLGLSAAK  157 (562)
T ss_dssp             EEEEECSB
T ss_pred             EEecCCCc
Confidence            55555444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.01  E-value=4.2e-10  Score=116.87  Aligned_cols=84  Identities=24%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      +..+++|++|+|++| .+..+|.. + .+++|++|+|++| .+..+| . +++|++|++|+|++|.+..+ |..++++++
T Consensus        69 ~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  146 (680)
T 1ziw_A           69 CQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN  146 (680)
T ss_dssp             HHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTT
T ss_pred             HhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhccccc
Confidence            456777777777777 46667664 4 6777777777774 455555 3 77777777777777777644 445677777


Q ss_pred             CcEEecccCCC
Q 017543          341 LLHLDLEDCKS  351 (369)
Q Consensus       341 L~~L~Ls~n~~  351 (369)
                      |++|++++|++
T Consensus       147 L~~L~L~~n~l  157 (680)
T 1ziw_A          147 LQELLLSNNKI  157 (680)
T ss_dssp             CCEEECCSSCC
T ss_pred             CCEEEccCCcc
Confidence            77777777763

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=9.4e-11  Score=125.59  Aligned_cols=111  Identities=16%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             hhhhhcccccCCCCCCCccccceeeEEeecCCCCCC--CcCccc-ccc-------CccEEEccCCCCCCcCCC---CCCC
Q 017543          249 KIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLK--SLPAGI-HLE-------FLKELDLSGCSKLKRLPD---ISSA  315 (369)
Q Consensus       249 L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~--~lP~~i-~L~-------~L~~L~Ls~~~~l~~lP~---i~~L  315 (369)
                      +.+..|.....+|..  +..+++|+.|+|++|..+.  .+|..+ .+.       +|+.|+|++| .+..+|.   +++|
T Consensus       496 L~Ls~N~l~~~iP~~--l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L  572 (876)
T 4ecn_A          496 VELYNCPNMTQLPDF--LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKM  572 (876)
T ss_dssp             EEEESCTTCCSCCGG--GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTC
T ss_pred             EECcCCCCCccChHH--HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcC
Confidence            333333334444422  4455555555555553132  244444 333       5555555542 2334554   4555


Q ss_pred             CCCCEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCC
Q 017543          316 ANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRN  364 (369)
Q Consensus       316 ~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~  364 (369)
                      ++|+.|+|++|.|..+| .++++++|++|+|++|+ +..+|..+..+++
T Consensus       573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~  619 (876)
T 4ecn_A          573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTD  619 (876)
T ss_dssp             TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECT
T ss_pred             CCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccc
Confidence            55555555555555555 45555555555555554 2355554444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.00  E-value=2e-10  Score=109.95  Aligned_cols=119  Identities=18%  Similarity=0.229  Sum_probs=95.7

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC---CCCCCCCCE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD---ISSAANIEE  320 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~  320 (369)
                      |+.+.... +.+..++. ..+..+++|++|++++| .+..+|.. + .+++|++|+|++ +.+..+|.   ++++++|++
T Consensus        78 L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~  153 (353)
T 2z80_A           78 LQALVLTS-NGINTIEE-DSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQI  153 (353)
T ss_dssp             CCEEECTT-SCCCEECT-TTTTTCTTCCEEECCSS-CCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCE
T ss_pred             CCEEECCC-CccCccCH-hhcCCCCCCCEEECCCC-cCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcE
Confidence            44444444 34444432 23678899999999999 58889887 5 899999999999 56778885   889999999


Q ss_pred             EEeecC-CCcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          321 MFLNGT-AIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n-~l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++++| .+..+| ..++++++|++|++++|++.+..|..+..+++|++|
T Consensus       154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  203 (353)
T 2z80_A          154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL  203 (353)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence            999999 688774 578999999999999999777778999988888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.99  E-value=8.2e-10  Score=106.38  Aligned_cols=113  Identities=20%  Similarity=0.233  Sum_probs=92.0

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI  328 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l  328 (369)
                      ..+.+..++...+...+.+|+.|+|++| .+..+|.. + .+++|++|+|++ +.+..+|.  +..|++|++|+|++|.|
T Consensus        47 s~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~i  124 (361)
T 2xot_A           47 SHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS-NHLHTLDEFLFSDLQALEVLLLYNNHI  124 (361)
T ss_dssp             CSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC-CcCCcCCHHHhCCCcCCCEEECCCCcc
Confidence            3455666665433338999999999999 58888764 5 899999999999 56788875  89999999999999999


Q ss_pred             ccc-CccccCCCCCcEEecccCCCCCcCCccc----cCCCCCCCC
Q 017543          329 EEL-PSSIECLYKLLHLDLEDCKSLKSLPSGL----FLCRNKCRI  368 (369)
Q Consensus       329 ~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~~i----~~L~~L~~L  368 (369)
                      ..+ |..++.|++|++|+|++|+ +..+|..+    ..+++|+.|
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A          125 VVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred             cEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence            977 5678999999999999998 78899886    457777665

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.99  E-value=4.7e-10  Score=119.94  Aligned_cols=121  Identities=18%  Similarity=0.140  Sum_probs=84.7

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC---CCCCCCCCE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD---ISSAANIEE  320 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~---i~~L~~L~~  320 (369)
                      |+.+.+..+.....++. ..+.++++|++|+|++|. +..+ |..+ .+++|++|+|++|...+.+|.   +++|++|++
T Consensus        50 L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             CeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            44444444434444422 225778888888888884 5554 6666 888888888888655554553   788888888


Q ss_pred             EEeecCCCccc--CccccCCCCCcEEecccCCCCCcCCccccCC--CCCCCC
Q 017543          321 MFLNGTAIEEL--PSSIECLYKLLHLDLEDCKSLKSLPSGLFLC--RNKCRI  368 (369)
Q Consensus       321 L~Ls~n~l~~L--P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L--~~L~~L  368 (369)
                      |+|++|.+..+  |..+++|++|++|+|++|.+.+..|..+..+  ++|+.|
T Consensus       128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L  179 (844)
T 3j0a_A          128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF  179 (844)
T ss_dssp             EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred             EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence            88888888755  3468888888888888888667777777665  566554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.99  E-value=5.1e-12  Score=111.44  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCc--cccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPS--SIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~--~i~~L~~L~  342 (369)
                      +..+++|+.|++++| .+..+|..+ .+++|++|+|++ +.+..+|.++.+++|++|+|++|.|..+|.  .++.+++|+
T Consensus        66 ~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~  143 (198)
T 1ds9_A           66 LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY-NQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE  143 (198)
T ss_dssp             HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEE-EECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred             cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcC-CcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence            444555555555555 344555444 445555555555 234444444455555555555555555443  455555555


Q ss_pred             EEecccCCCCCcCC
Q 017543          343 HLDLEDCKSLKSLP  356 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP  356 (369)
                      +|++++|++.+.+|
T Consensus       144 ~L~l~~N~l~~~~~  157 (198)
T 1ds9_A          144 DLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEEECSCHHHHHHH
T ss_pred             EEEecCCccccccc
Confidence            55555555333333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.99  E-value=4.1e-11  Score=113.37  Aligned_cols=119  Identities=19%  Similarity=0.144  Sum_probs=93.7

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls  324 (369)
                      |+.+.... +.+...+...+...+++|+.|+|++| .+..+|....+++|+.|+|++ +.+..+|. +..+++|++|+|+
T Consensus       146 L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~  222 (317)
T 3o53_A          146 VQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLR  222 (317)
T ss_dssp             EEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECT
T ss_pred             CCEEECCC-CCCCcccHHHHhhccCcCCEEECCCC-cCcccccccccccCCEEECCC-CcCCcchhhhcccCcccEEECc
Confidence            33343333 33444333333456899999999999 588887655899999999999 66888886 9999999999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCC-CcCCccccCCCCCCC
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSL-KSLPSGLFLCRNKCR  367 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l-~~lP~~i~~L~~L~~  367 (369)
                      +|.|+.+|..++.+++|++|+|++|++. +.+|..+..+++|+.
T Consensus       223 ~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~  266 (317)
T 3o53_A          223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT  266 (317)
T ss_dssp             TSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred             CCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence            9999999999999999999999999965 577777777665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.99  E-value=2.1e-10  Score=115.86  Aligned_cols=119  Identities=19%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCc--CCC-CCCCCCCCE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKR--LPD-ISSAANIEE  320 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~  320 (369)
                      |+.+....+ .+..++. ..+..+++|++|+|++| .+..+|.. + .+++|++|+|++| .+..  +|. ++++++|++
T Consensus        52 L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~  127 (549)
T 2z81_A           52 LQVLILKSS-RINTIEG-DAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQT  127 (549)
T ss_dssp             CCEEECTTS-CCCEECT-TTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCE
T ss_pred             ccEEECCCC-CcCccCh-hhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccE
Confidence            444444443 3444432 22567888899999888 47777765 5 8888999999884 4553  455 888889999


Q ss_pred             EEeecCC-CcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          321 MFLNGTA-IEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n~-l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|. +..+| ..++++++|++|++++|.+.+.+|..+..+++|++|
T Consensus       128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  177 (549)
T 2z81_A          128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHL  177 (549)
T ss_dssp             EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceE
Confidence            9998886 66777 468888899999999888777788888888777655

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.98  E-value=1.8e-10  Score=104.19  Aligned_cols=121  Identities=14%  Similarity=0.092  Sum_probs=93.7

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCcc---EEEccCCCCCCcCCC--CCCCCCC
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLK---ELDLSGCSKLKRLPD--ISSAANI  318 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~---~L~Ls~~~~l~~lP~--i~~L~~L  318 (369)
                      .|+.+....|+.+..++.. .+..+++|+.|++++| .+..+|. + .+.+|+   +|++++|..+..+|.  +..+++|
T Consensus        81 ~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L  157 (239)
T 2xwt_C           81 KVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNT-GLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE  157 (239)
T ss_dssp             TCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEE-CCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS
T ss_pred             CCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCC-CCccccc-cccccccccccEEECCCCcchhhcCcccccchhcc
Confidence            3444545454667766643 3567899999999999 5888887 6 777777   999999647888885  8899999


Q ss_pred             C-EEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCc-cccCC-CCCCCC
Q 017543          319 E-EMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPS-GLFLC-RNKCRI  368 (369)
Q Consensus       319 ~-~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L-~~L~~L  368 (369)
                      + +|+|++|.++.+|..+....+|+.|+|++|+.+..+|. .+..+ ++|+.|
T Consensus       158 ~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L  210 (239)
T 2xwt_C          158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL  210 (239)
T ss_dssp             EEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred             eeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence            9 99999999999998876668999999999954667764 46667 777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.98  E-value=6.5e-10  Score=110.60  Aligned_cols=120  Identities=24%  Similarity=0.306  Sum_probs=86.4

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L  321 (369)
                      .|+.+.+..+ .+..++. ..+..+++|+.|+|++| .+..+|...  .+++|++|+|++|......|. +.++++|++|
T Consensus        57 ~L~~L~L~~n-~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L  133 (477)
T 2id5_A           57 HLEELELNEN-IVSAVEP-GAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL  133 (477)
T ss_dssp             TCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCEEECCCC-ccCEeCh-hhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence            3444444443 3343322 22678889999999998 578888764  789999999998543333444 8889999999


Q ss_pred             EeecCCCccc-CccccCCCCCcEEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          322 FLNGTAIEEL-PSSIECLYKLLHLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~L-P~~i~~L~~L~~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      +|++|.+..+ |..++.+++|++|+|++|+ +..+|. .+..+++|+.|
T Consensus       134 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L  181 (477)
T 2id5_A          134 EVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVL  181 (477)
T ss_dssp             EECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEE
T ss_pred             ECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEE
Confidence            9999988866 4568889999999999988 556664 47777777765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.97  E-value=7.6e-10  Score=104.81  Aligned_cols=88  Identities=19%  Similarity=0.308  Sum_probs=63.1

Q ss_pred             ceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          270 NTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      ++|+.|++++|. +..+ |..+ .+++|+.|+|++| .+..++ . ++.+++|++|+|++|.|..+|.+++.+++|++|+
T Consensus       192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~  269 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY  269 (330)
T ss_dssp             TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEE
Confidence            667777777773 5555 4455 7788888888874 455554 3 7778888888888888888888888888888888


Q ss_pred             cccCCCCCcCCcccc
Q 017543          346 LEDCKSLKSLPSGLF  360 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~  360 (369)
                      |++|+ +..+|...+
T Consensus       270 l~~N~-i~~~~~~~f  283 (330)
T 1xku_A          270 LHNNN-ISAIGSNDF  283 (330)
T ss_dssp             CCSSC-CCCCCTTSS
T ss_pred             CCCCc-CCccChhhc
Confidence            88877 666665443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.97  E-value=1.2e-09  Score=110.40  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=87.5

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEE  320 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~  320 (369)
                      .++.+....+. +..++. ..+..+++|++|++++| .+..++ ..+ .+++|++|+|++| .+..+| . +++|++|++
T Consensus        27 ~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  102 (549)
T 2z81_A           27 AMKSLDLSFNK-ITYIGH-GDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKY  102 (549)
T ss_dssp             TCCEEECCSSC-CCEECS-STTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCE
T ss_pred             CccEEECcCCc-cCccCh-hhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcE
Confidence            44445444433 444432 22577888999999988 466665 456 8889999999984 566666 4 888999999


Q ss_pred             EEeecCCCcc--cCccccCCCCCcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543          321 MFLNGTAIEE--LPSSIECLYKLLHLDLEDCKSLKSLP-SGLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n~l~~--LP~~i~~L~~L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L  368 (369)
                      |+|++|.++.  +|..++++++|++|++++|+.++.+| ..+..+++|++|
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L  153 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL  153 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence            9999998884  46778889999999999888777777 467777777655

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.97  E-value=1.2e-09  Score=103.78  Aligned_cols=97  Identities=22%  Similarity=0.344  Sum_probs=55.5

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|++|++++| .+..+|. + .+++|++|+|++ +.+..+|.++++++|++|+|++|.+..+|. +..+++|++|
T Consensus        62 ~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~-n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L  137 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGT-NKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSL  137 (347)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEE
T ss_pred             hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccC-CcccCchHHcCCCcCCEEECcCCcccCchh-hccCCceeEE
Confidence            445666666666666 3555555 4 566666666666 345555556666666666666666666555 5566666666


Q ss_pred             ecccCCCCCcCCccccCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      ++++|..+..+|. +..+++|+.
T Consensus       138 ~l~~n~~~~~~~~-~~~l~~L~~  159 (347)
T 4fmz_A          138 NLGANHNLSDLSP-LSNMTGLNY  159 (347)
T ss_dssp             ECTTCTTCCCCGG-GTTCTTCCE
T ss_pred             ECCCCCCcccccc-hhhCCCCcE
Confidence            6666543443333 444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.97  E-value=1.5e-09  Score=112.02  Aligned_cols=97  Identities=23%  Similarity=0.333  Sum_probs=74.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|+|++| .+..+| .+ .+++|+.|+|++ +.+..+|.++.|++|+.|+|++|.|..+ ..++.|++|+.|
T Consensus        83 l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L  158 (605)
T 1m9s_A           83 LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEH-NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTL  158 (605)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTT-SCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEE
T ss_pred             hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecC-CCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEE
Confidence            567788888888888 477766 45 788888888887 4566676688888888888888888877 568888888888


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|. +..+|. +..|++|++|
T Consensus       159 ~Ls~N~-l~~~~~-l~~l~~L~~L  180 (605)
T 1m9s_A          159 SLEDNQ-ISDIVP-LAGLTKLQNL  180 (605)
T ss_dssp             ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             ECcCCc-CCCchh-hccCCCCCEE
Confidence            888888 444444 7777777765

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.97  E-value=8.2e-10  Score=111.86  Aligned_cols=104  Identities=19%  Similarity=0.212  Sum_probs=78.1

Q ss_pred             CccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCC-CcCCC-CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          265 FSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKL-KRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       265 ~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l-~~lP~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      .+..+++|+.|++++|...+..|..+ .+++|++|+|++|... +.+|. ++.+++|++|+|++|.++.+ |..++++++
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            35677888888888885434455566 7888888888885543 35786 88888889999988888866 777888888


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|+|++|++.+..|..+..+++|+.|
T Consensus       496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L  523 (570)
T 2z63_A          496 LQVLNMASNQLKSVPDGIFDRLTSLQKI  523 (570)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence            9999998888554445557777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.95  E-value=1.1e-09  Score=113.10  Aligned_cols=113  Identities=20%  Similarity=0.272  Sum_probs=91.9

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls  324 (369)
                      |+.+.+.. +.+..++   .+..+++|+.|+|++| .+..+|. + .|++|+.|+|++ +.+..++.++.|++|+.|+|+
T Consensus        89 L~~L~Ls~-N~l~~l~---~l~~l~~L~~L~Ls~N-~l~~l~~-l~~l~~L~~L~Ls~-N~l~~l~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           89 LGWLFLDE-NKIKDLS---SLKDLKKLKSLSLEHN-GISDING-LVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLE  161 (605)
T ss_dssp             CCEEECCS-SCCCCCT---TSTTCTTCCEEECTTS-CCCCCGG-GGGCTTCSEEECCS-SCCCCCGGGGSCTTCSEEECC
T ss_pred             CCEEECcC-CCCCCCh---hhccCCCCCEEEecCC-CCCCCcc-ccCCCccCEEECCC-CccCCchhhcccCCCCEEECc
Confidence            33343333 3455554   2678999999999999 5787764 6 899999999999 567777669999999999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|.|..++. ++.|++|++|+|++|+ +..+| .+..|++|+.|
T Consensus       162 ~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L  202 (605)
T 1m9s_A          162 DNQISDIVP-LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVL  202 (605)
T ss_dssp             SSCCCCCGG-GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEE
T ss_pred             CCcCCCchh-hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEE
Confidence            999998877 9999999999999998 66775 58888888765

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.95  E-value=1.1e-09  Score=116.99  Aligned_cols=122  Identities=18%  Similarity=0.138  Sum_probs=93.2

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEM  321 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L  321 (369)
                      .++.+.+.. +.+..++. ..+..+++|++|+|++|..+..+ |..+ ++++|++|+|++|......|. +++|++|++|
T Consensus        25 ~l~~LdLs~-N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           25 TTERLLLSF-NYIRTVTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TCCEEEEES-CCCCEECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CcCEEECCC-CcCCccCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            444454444 44454432 23678999999999999667777 5566 899999999999654444476 9999999999


Q ss_pred             EeecCCCcc-cCcc--ccCCCCCcEEecccCCCCCcCC-ccccCCCCCCCC
Q 017543          322 FLNGTAIEE-LPSS--IECLYKLLHLDLEDCKSLKSLP-SGLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~-LP~~--i~~L~~L~~L~Ls~n~~l~~lP-~~i~~L~~L~~L  368 (369)
                      +|++|.+.. +|..  +++|++|++|+|++|.+.+..| ..+.+|++|+.|
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            999999984 6665  8999999999999998555434 578889988876

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.94  E-value=2.6e-10  Score=107.32  Aligned_cols=98  Identities=18%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             ccccceeeEEeecCCCCCCCcCcc----c-cccCccEEEccCCCCCCcCCC-CCCC---CCCCEEEeecCCCcccCcccc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAG----I-HLEFLKELDLSGCSKLKRLPD-ISSA---ANIEEMFLNGTAIEELPSSIE  336 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~----i-~L~~L~~L~Ls~~~~l~~lP~-i~~L---~~L~~L~Ls~n~l~~LP~~i~  336 (369)
                      ...+++|++|+|++| .+..+|..    + .+++|++|+|++|.....+|. ++.+   ++|++|+|++|.|+.+|..+.
T Consensus       193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~  271 (310)
T 4glp_A          193 PHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP  271 (310)
T ss_dssp             TTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred             hhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence            456778888888888 46666653    3 678999999998544333475 6666   689999999999999998875


Q ss_pred             CCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          337 CLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       337 ~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                        ++|++|+|++|+ +..+|. +..+++|+.|
T Consensus       272 --~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          272 --AKLRVLDLSSNR-LNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             --SCCSCEECCSCC-CCSCCC-TTSCCCCSCE
T ss_pred             --CCCCEEECCCCc-CCCCch-hhhCCCccEE
Confidence              789999999988 566665 5666777665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.94  E-value=1.2e-09  Score=108.54  Aligned_cols=119  Identities=18%  Similarity=0.175  Sum_probs=88.8

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCC-C-CCCCCCCCEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEM  321 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L  321 (369)
                      |+.+.+.. +.+..+|.. .+..+++|+.|+|++|. +..+ |..+ .+++|+.|+|++| .+..++ . ++.+++|+.|
T Consensus        82 L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  157 (477)
T 2id5_A           82 LRTLGLRS-NRLKLIPLG-VFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQL  157 (477)
T ss_dssp             CCEEECCS-SCCCSCCTT-SSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEE
T ss_pred             CCEEECCC-CcCCccCcc-cccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEE
Confidence            44343433 446666643 35678999999999994 5555 4455 8999999999984 455554 4 8899999999


Q ss_pred             EeecCCCcccCcc-ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          322 FLNGTAIEELPSS-IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       322 ~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|.++.+|.. ++++++|+.|+|++|.+.+..|..+..+++|+.|
T Consensus       158 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L  205 (477)
T 2id5_A          158 TLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL  205 (477)
T ss_dssp             EEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEE
T ss_pred             ECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCccccee
Confidence            9999999988864 7899999999999998555555577778887765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.94  E-value=6.7e-10  Score=104.71  Aligned_cols=101  Identities=20%  Similarity=0.207  Sum_probs=54.1

Q ss_pred             hhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cc-----cCccEEEccCCCCCCcCC-C-CCCCCCCC
Q 017543          248 EKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HL-----EFLKELDLSGCSKLKRLP-D-ISSAANIE  319 (369)
Q Consensus       248 ~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L-----~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~  319 (369)
                      .+....+.....+|...++..+++|+.|+|++| .+..+|..+ .+     ++|++|+|++ +.+..+| . ++++++|+
T Consensus        99 ~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~  176 (312)
T 1wwl_A           99 ELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALS  176 (312)
T ss_dssp             EEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTCCCCSSCC
T ss_pred             EEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHhccCCCCC
Confidence            333333333334444322356666777777766 355555555 44     6666666666 3344444 3 66666666


Q ss_pred             EEEeecCCCcc---cCccc--cCCCCCcEEecccCC
Q 017543          320 EMFLNGTAIEE---LPSSI--ECLYKLLHLDLEDCK  350 (369)
Q Consensus       320 ~L~Ls~n~l~~---LP~~i--~~L~~L~~L~Ls~n~  350 (369)
                      +|+|++|.+..   +|..+  +++++|++|+|++|+
T Consensus       177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~  212 (312)
T 1wwl_A          177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG  212 (312)
T ss_dssp             EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC
T ss_pred             EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc
Confidence            66666665431   33344  555555555555555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.93  E-value=1.8e-09  Score=110.88  Aligned_cols=46  Identities=17%  Similarity=0.248  Sum_probs=25.3

Q ss_pred             cccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCC
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGC  303 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~  303 (369)
                      .+..+|.. .+..+++|+.|+|++|. +..+++ .+ .+++|++|+|++|
T Consensus       134 ~l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N  181 (597)
T 3oja_B          134 DLSSLPRG-IFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN  181 (597)
T ss_dssp             CCCCCCTT-TTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred             CCCCCCHH-HhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence            34444432 23556666666666663 444443 34 6666666666663

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.92  E-value=9.4e-10  Score=106.62  Aligned_cols=98  Identities=15%  Similarity=0.137  Sum_probs=73.8

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      +..+++|+.|++++|. +..+ |..+ .+++|+.|+|++ +.+..+|. ++.+++|++|+|++|.+..+|..++.+++|+
T Consensus       244 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  321 (390)
T 3o6n_A          244 LLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLE  321 (390)
T ss_dssp             GGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCS
T ss_pred             HcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCC
Confidence            5667788888888884 5544 5556 788888888887 56777776 7778888888888888888888888888888


Q ss_pred             EEecccCCCCCcCCccccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+|++|+ +..+|  +..+++|+.|
T Consensus       322 ~L~L~~N~-i~~~~--~~~~~~L~~L  344 (390)
T 3o6n_A          322 NLYLDHNS-IVTLK--LSTHHTLKNL  344 (390)
T ss_dssp             EEECCSSC-CCCCC--CCTTCCCSEE
T ss_pred             EEECCCCc-cceeC--chhhccCCEE
Confidence            88888887 56665  5556666554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.92  E-value=1.4e-09  Score=111.21  Aligned_cols=99  Identities=15%  Similarity=0.087  Sum_probs=62.1

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCcccC-ccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEELP-SSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~LP-~~i~~L~~  340 (369)
                      +..+++|++|+|++|. +..+ |..+ .+++|++|+|++ +.+..+ |. ++++++|++|+|++|.+..++ ..+..+++
T Consensus        77 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  154 (606)
T 3t6q_A           77 FQSQHRLDTLVLTANP-LIFMAETALSGPKALKHLFFIQ-TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK  154 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CSEECTTTTSSCTTCCEEECTT-SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTT
T ss_pred             ccCccccCeeeCCCCc-ccccChhhhcccccccEeeccc-cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcc
Confidence            4567777777777773 4443 4455 677777777776 345555 33 677777777777777776552 22333777


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKC  366 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~  366 (369)
                      |++|++++|++.+..|..+..+++|+
T Consensus       155 L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          155 LKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             CCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             cCEEEcccCcccccChhhhhhhcccc
Confidence            77777777764444455566666665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.91  E-value=1.3e-09  Score=104.40  Aligned_cols=112  Identities=24%  Similarity=0.216  Sum_probs=90.0

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .++.+..++...|......++.|+|++| .+..+|..+ ...+|+.|++++|+.++.+|.  +..+++|++|+|++|+|+
T Consensus       137 ~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~  215 (350)
T 4ay9_X          137 DNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  215 (350)
T ss_dssp             SCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred             cccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence            3445555665555444567899999999 689999888 888999999999899999995  799999999999999999


Q ss_pred             ccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          330 ELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .||..  .+.+|+.|.+.+|..++.+|. +.+|++|+.+
T Consensus       216 ~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l  251 (350)
T 4ay9_X          216 SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEA  251 (350)
T ss_dssp             CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEE
T ss_pred             ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhC
Confidence            99974  366777777777777899994 6667777654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.91  E-value=2.2e-09  Score=106.94  Aligned_cols=100  Identities=14%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             cccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCcc
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSS  334 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~  334 (369)
                      .+..+| .  +..+++|++|++++| .+..+|  + .+++|++|+|++ +.+..+| ++++++|++|+|++|.++.+|  
T Consensus        53 ~l~~~~-~--l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~-N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--  122 (457)
T 3bz5_A           53 SITDMT-G--IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDS-NKLTNLD-VTPLTKLTYLNCDTNKLTKLD--  122 (457)
T ss_dssp             CCCCCT-T--GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCS-SCCSCCC-CTTCTTCCEEECCSSCCSCCC--
T ss_pred             CcccCh-h--hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcC-CCCceee-cCCCCcCCEEECCCCcCCeec--
Confidence            445554 2  567888888888888 477775  6 788888888888 4466665 788888888888888888876  


Q ss_pred             ccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          335 IECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       335 i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++++++|++|++++|+ +..+|  +..+++|+.|
T Consensus       123 ~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L  153 (457)
T 3bz5_A          123 VSQNPLLTYLNCARNT-LTEID--VSHNTQLTEL  153 (457)
T ss_dssp             CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEE
T ss_pred             CCCCCcCCEEECCCCc-cceec--cccCCcCCEE
Confidence            8888888888888887 55565  6666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.91  E-value=6.9e-12  Score=110.59  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=84.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~  343 (369)
                      +..+++|+.|++++| .+..+| .+ .+++|++|+|++ +.+..+|. ++.+++|++|+|++|.|+.+| .++.+++|++
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~-n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~  119 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEE-EEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSE
T ss_pred             HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCC-CCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCE
Confidence            567889999999999 588888 77 899999999998 56778998 778899999999999999988 6899999999


Q ss_pred             EecccCCCCCcCCc--cccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPS--GLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~--~i~~L~~L~~L  368 (369)
                      |++++|+ +..+|.  .+..+++|+.|
T Consensus       120 L~l~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T 1ds9_A          120 LYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             EECCCCc-CCchhHHHHHhcCCCCCEE
Confidence            9999998 666665  67788888765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.90  E-value=2e-09  Score=108.07  Aligned_cols=98  Identities=19%  Similarity=0.271  Sum_probs=65.5

Q ss_pred             cccceeeEEeecCCCCCCC-cCcc-c-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          267 QHLNTLVVLNLRDCKSLKS-LPAG-I-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~-lP~~-i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      ..+++|+.|++++|. +.. +|.. + .+++|+.|+|++|...+.+|. +.  ++|++|+|++|.|+.+|..+..+++|+
T Consensus       371 ~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~  447 (520)
T 2z7x_B          371 TQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQ  447 (520)
T ss_dssp             TTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCC
T ss_pred             hhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCC
Confidence            345556666666653 333 5554 2 556666666666443344443 33  678888888888888888888888888


Q ss_pred             EEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      +|+|++|+ +..+|.. +..+++|+.|
T Consensus       448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          448 ELNVASNQ-LKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             EEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             EEECCCCc-CCccCHHHhccCCcccEE
Confidence            88888887 6678877 6677777654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.90  E-value=3.1e-09  Score=108.13  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=63.0

Q ss_pred             cccceeeEEeecCCCCCCC-cCccc--cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCc
Q 017543          267 QHLNTLVVLNLRDCKSLKS-LPAGI--HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLL  342 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~-lP~~i--~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~  342 (369)
                      ..+++|+.|++++|. +.. +|...  .+++|++|+|++|...+.+|. +.  ++|++|+|++|.|+.+|..++.+++|+
T Consensus       400 ~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~  476 (562)
T 3a79_B          400 KNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQ  476 (562)
T ss_dssp             TTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCS
T ss_pred             cCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCC
Confidence            344455555555552 332 44432  455555555555333333333 22  678888888888888888888888999


Q ss_pred             EEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      +|+|++|+ +..+|.. +..+++|+.|
T Consensus       477 ~L~L~~N~-l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          477 ELNVASNQ-LKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             EEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred             EEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence            99999888 6688887 7777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=2.7e-09  Score=101.71  Aligned_cols=93  Identities=17%  Similarity=0.142  Sum_probs=77.3

Q ss_pred             EEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecccC
Q 017543          274 VLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDC  349 (369)
Q Consensus       274 ~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n  349 (369)
                      .+++++++.+..+|. + .+++|+.|+|+++|.+..+|.  ++.|++|+.|+|++|.|+.+|. .+++|++|++|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            457777645889999 9 899999999997577888884  9999999999999999998765 5799999999999999


Q ss_pred             CCCCcCCccccCCCCCCCC
Q 017543          350 KSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       350 ~~l~~lP~~i~~L~~L~~L  368 (369)
                      + +..+|..++...+|+.|
T Consensus        91 ~-l~~~~~~~~~~~~L~~l  108 (347)
T 2ifg_A           91 A-LESLSWKTVQGLSLQEL  108 (347)
T ss_dssp             C-CSCCCSTTTCSCCCCEE
T ss_pred             c-cceeCHHHcccCCceEE
Confidence            8 77888776654446544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.89  E-value=7.6e-10  Score=104.34  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=82.9

Q ss_pred             ccceeeEEeecCCCCCCCcCccc---cccCccEEEccCCCCCCcCCC-CCCC-----CCCCEEEeecCCCcccC-ccccC
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGI---HLEFLKELDLSGCSKLKRLPD-ISSA-----ANIEEMFLNGTAIEELP-SSIEC  337 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i---~L~~L~~L~Ls~~~~l~~lP~-i~~L-----~~L~~L~Ls~n~l~~LP-~~i~~  337 (369)
                      .+++|+.|+|++|...+.+|..+   .+++|++|+|++ +.+..+|. ++.+     ++|++|+|++|.|..+| ..+++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence            57899999999996445788864   799999999999 55666787 7766     99999999999999877 78999


Q ss_pred             CCCCcEEecccCCCCCc--CCccc--cCCCCCCCC
Q 017543          338 LYKLLHLDLEDCKSLKS--LPSGL--FLCRNKCRI  368 (369)
Q Consensus       338 L~~L~~L~Ls~n~~l~~--lP~~i--~~L~~L~~L  368 (369)
                      +++|++|+|++|++.+.  +|..+  ..+++|+.|
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L  206 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVL  206 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEE
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEE
Confidence            99999999999996665  45555  677777765

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.88  E-value=3e-09  Score=110.39  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=97.0

Q ss_pred             hhhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCE
Q 017543          245 ALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE  320 (369)
Q Consensus       245 aL~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~  320 (369)
                      .++.+.... +.+..++. ..+..+++|++|+|++|. +..+ |..+ ++++|++|+|++ +.+..+|.  ++++++|++
T Consensus        26 ~l~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~  101 (680)
T 1ziw_A           26 NITVLNLTH-NQLRRLPA-ANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTE  101 (680)
T ss_dssp             TCSEEECCS-SCCCCCCG-GGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCS-SCCCCCCTTTTTTCTTCSE
T ss_pred             CCcEEECCC-CCCCCcCH-HHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCC-CccCccChhhhccCCCCCE
Confidence            344444443 44566654 236789999999999994 6665 5556 899999999999 56788885  999999999


Q ss_pred             EEeecCCCcccC-ccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          321 MFLNGTAIEELP-SSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       321 L~Ls~n~l~~LP-~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|.+..+| ..+++|++|++|++++|++.+..|..+..+++|++|
T Consensus       102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  150 (680)
T 1ziw_A          102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL  150 (680)
T ss_dssp             EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred             EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence            999999999887 568999999999999999777778888888888876

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.88  E-value=2e-10  Score=115.45  Aligned_cols=118  Identities=19%  Similarity=0.146  Sum_probs=92.8

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls  324 (369)
                      |+.+.+.. +.+...+...+...+++|+.|+|++| .+..+|....+++|++|+|++ +.+..+|. ++.+++|+.|+|+
T Consensus       146 L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls  222 (487)
T 3oja_A          146 VQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLR  222 (487)
T ss_dssp             EEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECCCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECT
T ss_pred             CCEEECCC-CCCCCcChHHHhhhCCcccEEecCCC-ccccccccccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEec
Confidence            44444433 33444332333447899999999999 588887655899999999999 56778886 9999999999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCC-CcCCccccCCCCCC
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSL-KSLPSGLFLCRNKC  366 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l-~~lP~~i~~L~~L~  366 (369)
                      +|.|..+|..++.+++|+.|++++|++. +.+|..+..++.|.
T Consensus       223 ~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~  265 (487)
T 3oja_A          223 NNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ  265 (487)
T ss_dssp             TSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred             CCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence            9999999999999999999999999965 47777776665443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.88  E-value=5.7e-09  Score=98.74  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=88.2

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEE
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMF  322 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~  322 (369)
                      ++.+.... +.+..++.. .+..+++|++|++++| .+..+ |..+ .+++|++|+|++ +.++.+|. +.  ++|++|+
T Consensus        54 l~~L~L~~-n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~  127 (330)
T 1xku_A           54 TALLDLQN-NKITEIKDG-DFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELR  127 (330)
T ss_dssp             CCEEECCS-SCCCCBCTT-TTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEE
T ss_pred             CeEEECCC-CcCCEeChh-hhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEE
Confidence            44343333 445555542 3578899999999998 46666 6677 899999999998 56778886 54  7899999


Q ss_pred             eecCCCcccCcc-ccCCCCCcEEecccCCCC--CcCCccccCCCCCCCC
Q 017543          323 LNGTAIEELPSS-IECLYKLLHLDLEDCKSL--KSLPSGLFLCRNKCRI  368 (369)
Q Consensus       323 Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l--~~lP~~i~~L~~L~~L  368 (369)
                      +++|.+..+|.. ++++++|++|++++|.+.  +..|..+..+++|+.|
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            999999887764 789999999999998843  3667788888888765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.88  E-value=3.9e-09  Score=108.10  Aligned_cols=89  Identities=18%  Similarity=0.378  Sum_probs=44.5

Q ss_pred             cceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCC-------
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKL-------  341 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L-------  341 (369)
                      +++|+.|+|++| .+..+|.  .+++|++|+|++ |.++.+|.++  ++|+.|+|++|.|+.+|. +..  +|       
T Consensus       139 l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~-N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L  209 (571)
T 3cvr_A          139 PALLEYINADNN-QLTMLPE--LPTSLEVLSVRN-NQLTFLPELP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETE  209 (571)
T ss_dssp             CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS-SCCSCCCCCC--TTCCEEECCSSCCSSCCC-CC----------CC
T ss_pred             CccccEEeCCCC-ccCcCCC--cCCCcCEEECCC-CCCCCcchhh--CCCCEEECcCCCCCchhh-HHH--hhhcccccc
Confidence            455555555555 3444554  345555555555 3344455533  555555555555555555 433  44       


Q ss_pred             cEEecccCCCCCcCCccccCCCCCCC
Q 017543          342 LHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       342 ~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      ++|+|++|+ +..||.+++.+++|+.
T Consensus       210 ~~L~Ls~N~-l~~lp~~l~~l~~L~~  234 (571)
T 3cvr_A          210 IFFRCRENR-ITHIPENILSLDPTCT  234 (571)
T ss_dssp             EEEECCSSC-CCCCCGGGGGSCTTEE
T ss_pred             eEEecCCCc-ceecCHHHhcCCCCCE
Confidence            555555554 4455555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.87  E-value=2.6e-09  Score=106.17  Aligned_cols=96  Identities=16%  Similarity=0.292  Sum_probs=68.6

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|++|++++| .+..+|. + .+++|++|++++ +.+..+|.++++++|++|+|++|.++.+|. ++++++|++|
T Consensus        64 ~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A           64 VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNN-NQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCC-CccccChhhcCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence            456778888888887 4677766 6 788888888887 445556557778888888888888877765 7778888888


Q ss_pred             ecccCCCCCcCCccccCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      ++++|+ +..+|. +..+++|+.
T Consensus       140 ~l~~n~-l~~~~~-~~~l~~L~~  160 (466)
T 1o6v_A          140 ELSSNT-ISDISA-LSGLTSLQQ  160 (466)
T ss_dssp             EEEEEE-ECCCGG-GTTCTTCSE
T ss_pred             ECCCCc-cCCChh-hccCCcccE
Confidence            888776 555553 555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.87  E-value=5.8e-09  Score=103.91  Aligned_cols=109  Identities=19%  Similarity=0.186  Sum_probs=84.6

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls  324 (369)
                      |+.+.... +.+..++    ++.+++|+.|++++| .+..+|  + .+++|++|+|++ +.+..+| ++.+++|++|+++
T Consensus        66 L~~L~Ls~-n~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~-N~l~~l~-~~~l~~L~~L~l~  135 (457)
T 3bz5_A           66 LTKLICTS-NNITTLD----LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDT-NKLTKLD-VSQNPLLTYLNCA  135 (457)
T ss_dssp             CSEEECCS-SCCSCCC----CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCS-SCCSCCC-CTTCTTCCEEECT
T ss_pred             CCEEEccC-CcCCeEc----cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCC-CcCCeec-CCCCCcCCEEECC
Confidence            44444433 3455553    567889999999998 477775  6 899999999998 4566776 8889999999999


Q ss_pred             cCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          325 GTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       325 ~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|.++.+|  ++++++|++|++++|+.++.++  +..+++|+.|
T Consensus       136 ~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L  175 (457)
T 3bz5_A          136 RNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTL  175 (457)
T ss_dssp             TSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEE
T ss_pred             CCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEE
Confidence            99999885  8899999999999997788773  6667777654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.87  E-value=4.3e-09  Score=99.79  Aligned_cols=81  Identities=17%  Similarity=0.313  Sum_probs=48.8

Q ss_pred             ccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L  341 (369)
                      +..+++|+.|++++| .+..+ |..+ .+++|++|+|++ +.+..+|. +.  ++|++|+|++|.|..+|.. ++++++|
T Consensus        74 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           74 FKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            455666666666666 34444 4444 566666666666 44556664 43  5666666666666666543 5666666


Q ss_pred             cEEecccCC
Q 017543          342 LHLDLEDCK  350 (369)
Q Consensus       342 ~~L~Ls~n~  350 (369)
                      ++|++++|.
T Consensus       150 ~~L~l~~n~  158 (332)
T 2ft3_A          150 NCIEMGGNP  158 (332)
T ss_dssp             CEEECCSCC
T ss_pred             CEEECCCCc
Confidence            666666665

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.87  E-value=4.8e-09  Score=107.29  Aligned_cols=110  Identities=22%  Similarity=0.240  Sum_probs=66.2

Q ss_pred             cccCCCCCCCccccceeeEEeecCCCCCCCc-Cccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSL-PAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~l-P~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      .+..+|..  +..+++|+.|++++|. +..+ |..+ .+++|+.|++++|.....+|.  ++.+++|++|+|++|.+..+
T Consensus       289 ~l~~lp~~--l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          289 HLSELPSG--LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             CCSCCCSS--CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccCCCChh--hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            34455543  4566667777777663 4444 3344 666666666666544445553  66677777777777766644


Q ss_pred             ---CccccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          332 ---PSSIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       332 ---P~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                         |..++.+++|++|++++|++.+..|..+..+++|+.|
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  405 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL  405 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence               4556667777777777666444555556666655544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.86  E-value=6e-09  Score=98.75  Aligned_cols=104  Identities=19%  Similarity=0.375  Sum_probs=84.7

Q ss_pred             cccCCCCCCCccccceeeEEeecCCCCCCCcCc-cc-cccCccEEEccCCCCCCcC-CC-CCCCCCCCEEEeecCCCccc
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPA-GI-HLEFLKELDLSGCSKLKRL-PD-ISSAANIEEMFLNGTAIEEL  331 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~-~i-~L~~L~~L~Ls~~~~l~~l-P~-i~~L~~L~~L~Ls~n~l~~L  331 (369)
                      .+..+|..  +  .++|+.|++++| .+..+++ .+ .+++|++|+|++| .+..+ |. ++++++|++|+|++|.++.+
T Consensus        44 ~l~~ip~~--~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l  117 (332)
T 2ft3_A           44 GLKAVPKE--I--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEI  117 (332)
T ss_dssp             CCSSCCSC--C--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSC
T ss_pred             CccccCCC--C--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCcc
Confidence            35566643  2  368999999999 5777765 56 8999999999995 56666 55 99999999999999999999


Q ss_pred             CccccCCCCCcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          332 PSSIECLYKLLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |..+.  ++|++|++++|+ ++.+|.. +..+++|+.|
T Consensus       118 ~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A          118 PPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             CSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEE
T ss_pred             Ccccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEE
Confidence            99887  899999999998 6667654 7778888765

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.84  E-value=3.9e-09  Score=100.32  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=65.5

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcc-cCccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEE-LPSSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~-LP~~i~~L~~L~~  343 (369)
                      +..+++|+.|++++| .+..++ .+ .+++|++|++++| .+..+|.+..+++|+.|+|++|.+.. .|..++.+++|++
T Consensus       239 ~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  315 (347)
T 4fmz_A          239 LANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT  315 (347)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred             hhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence            456677777777777 456554 34 6777777777773 56666656777777777777777764 3455777777888


Q ss_pred             EecccCCCCCcCCccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|+ +..+|. +..+++|+.|
T Consensus       316 L~L~~n~-l~~~~~-~~~l~~L~~L  338 (347)
T 4fmz_A          316 LFLSQNH-ITDIRP-LASLSKMDSA  338 (347)
T ss_dssp             EECCSSS-CCCCGG-GGGCTTCSEE
T ss_pred             EEccCCc-cccccC-hhhhhcccee
Confidence            8887777 444444 6666666654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.81  E-value=2.8e-09  Score=100.23  Aligned_cols=117  Identities=18%  Similarity=0.156  Sum_probs=82.8

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCC--cCc--cc-cccCccEEEccCCCCCCcCCC-----CCCC
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKS--LPA--GI-HLEFLKELDLSGCSKLKRLPD-----ISSA  315 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~--lP~--~i-~L~~L~~L~Ls~~~~l~~lP~-----i~~L  315 (369)
                      |+.+.... +.+...+. ..+..+++|+.|+|++|...+.  ++.  .+ .+++|++|+|++ +.++.+|.     ++.+
T Consensus       147 L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l  223 (310)
T 4glp_A          147 LKVLSIAQ-AHSPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAG  223 (310)
T ss_dssp             CCEEEEEC-CSSCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHT
T ss_pred             CCEEEeeC-CCcchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcC
Confidence            44444444 33444443 2356788999999999853321  332  22 688999999998 45666654     3678


Q ss_pred             CCCCEEEeecCCCccc-CccccCC---CCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          316 ANIEEMFLNGTAIEEL-PSSIECL---YKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       316 ~~L~~L~Ls~n~l~~L-P~~i~~L---~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++|++|+|++|.|..+ |..++.+   ++|++|+|++|+ +..+|..+.  ++|+.|
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~--~~L~~L  277 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLP--AKLRVL  277 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCC--SCCSCE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhc--CCCCEE
Confidence            9999999999999866 8888777   599999999988 668898875  566654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.76  E-value=1.2e-08  Score=101.47  Aligned_cols=96  Identities=18%  Similarity=0.340  Sum_probs=84.7

Q ss_pred             cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      ..+.+|+.|++.+| .+..+|. + .+++|++|+|++ +.+..+|.++++++|++|+|++|.+..+|. ++++++|++|+
T Consensus        43 ~~l~~l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~-n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~  118 (466)
T 1o6v_A           43 TDLDQVTTLQADRL-GIKSIDG-VEYLNNLTQINFSN-NQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLT  118 (466)
T ss_dssp             HHHHTCCEEECCSS-CCCCCTT-GGGCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             hHhccccEEecCCC-CCccCcc-hhhhcCCCEEECCC-CccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence            35788999999999 5888885 6 899999999999 567777779999999999999999999988 99999999999


Q ss_pred             cccCCCCCcCCccccCCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +++|. +..+|. +..+++|++|
T Consensus       119 L~~n~-l~~~~~-~~~l~~L~~L  139 (466)
T 1o6v_A          119 LFNNQ-ITDIDP-LKNLTNLNRL  139 (466)
T ss_dssp             CCSSC-CCCCGG-GTTCTTCSEE
T ss_pred             CCCCC-CCCChH-HcCCCCCCEE
Confidence            99998 777776 8888888876

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.75  E-value=6.3e-09  Score=106.54  Aligned_cols=106  Identities=25%  Similarity=0.249  Sum_probs=84.7

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCC-------
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANI-------  318 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L-------  318 (369)
                      |+.+.+. .+.+..+|.     .+++|+.|+|++| .+..+|. +. ++|++|+|++ |.+..+|.++.  +|       
T Consensus       142 L~~L~Ls-~N~l~~lp~-----~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~-N~L~~lp~~~~--~L~~~~~~L  209 (571)
T 3cvr_A          142 LEYINAD-NNQLTMLPE-----LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVST-NLLESLPAVPV--RNHHSEETE  209 (571)
T ss_dssp             CCEEECC-SSCCSCCCC-----CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCS-SCCSSCCCCC----------CC
T ss_pred             ccEEeCC-CCccCcCCC-----cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcC-CCCCchhhHHH--hhhcccccc
Confidence            4333333 344555653     4689999999999 5888998 66 8999999999 57889998544  67       


Q ss_pred             CEEEeecCCCcccCccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543          319 EEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR  363 (369)
Q Consensus       319 ~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~  363 (369)
                      +.|+|++|.|+.||.++++|++|++|+|++|++.+.+|..+..+.
T Consensus       210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             eEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            999999999999999999999999999999998888888876653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.74  E-value=3e-08  Score=102.55  Aligned_cols=89  Identities=30%  Similarity=0.407  Sum_probs=51.3

Q ss_pred             ceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccC
Q 017543          270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC  349 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n  349 (369)
                      .+|+.|++++| .+..+|..  +++|+.|+|++ |.+..+|  ..+++|++|+|++|.|+.+|.   .+++|++|+|++|
T Consensus       201 ~~L~~L~L~~N-~l~~l~~~--~~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          201 SELYKLWAYNN-RLTSLPAL--PSGLKELIVSG-NRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             TTCCEEECCSS-CCSSCCCC--CTTCCEEECCS-SCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             chhhEEECcCC-cccccCCC--CCCCCEEEccC-CccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC
Confidence            34444445444 24444432  35566666666 3455566  344566666666666666665   4566666666666


Q ss_pred             CCCCcCCccccCCCCCCCC
Q 017543          350 KSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       350 ~~l~~lP~~i~~L~~L~~L  368 (369)
                      + +..||..+.++++|+.|
T Consensus       272 ~-L~~lp~~l~~l~~L~~L  289 (622)
T 3g06_A          272 Q-LTRLPESLIHLSSETTV  289 (622)
T ss_dssp             C-CCSCCGGGGGSCTTCEE
T ss_pred             C-CCcCCHHHhhccccCEE
Confidence            5 44666666666666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.73  E-value=3.7e-08  Score=97.92  Aligned_cols=78  Identities=18%  Similarity=0.302  Sum_probs=39.2

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      ++.+++|+.|++++| .+..+|..  +.+|++|++++ +.+..+|+++++++|++|++++|.++.+|...   .+|++|+
T Consensus       149 ~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~-n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~  221 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGN-NQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIV  221 (454)
T ss_dssp             CTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCS-SCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEE
T ss_pred             cCCCCCCCEEECCCC-cCcccCCC--cccccEEECcC-CcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEE
Confidence            455666666666666 35555543  23555555555 33444555555555555555555554444322   2344444


Q ss_pred             cccCC
Q 017543          346 LEDCK  350 (369)
Q Consensus       346 Ls~n~  350 (369)
                      +++|.
T Consensus       222 l~~n~  226 (454)
T 1jl5_A          222 AGNNI  226 (454)
T ss_dssp             CCSSC
T ss_pred             CcCCc
Confidence            44443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.67  E-value=6.6e-08  Score=96.15  Aligned_cols=84  Identities=30%  Similarity=0.477  Sum_probs=68.2

Q ss_pred             ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~  348 (369)
                      ++|++|++++| .+..+| .+ .+++|++|++++ +.+..+|..  ..+|++|++++|.++.+| .++++++|++|++++
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~-N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDN-NSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS-SCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCC-CcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence            68899999998 577788 47 899999999998 467778862  248999999999999888 689999999999999


Q ss_pred             CCCCCcCCcccc
Q 017543          349 CKSLKSLPSGLF  360 (369)
Q Consensus       349 n~~l~~lP~~i~  360 (369)
                      |+ +..+|....
T Consensus       205 N~-l~~l~~~~~  215 (454)
T 1jl5_A          205 NS-LKKLPDLPL  215 (454)
T ss_dssp             SC-CSSCCCCCT
T ss_pred             Cc-CCcCCCCcC
Confidence            88 556776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.67  E-value=6.4e-10  Score=105.19  Aligned_cols=101  Identities=22%  Similarity=0.312  Sum_probs=64.4

Q ss_pred             ccccceeeEEeecCCCCCCC--cCccc-ccc-CccEEEccCCC-CC--CcCCC-CCCCCCCCEEEeecCC-Cc-ccCccc
Q 017543          266 SQHLNTLVVLNLRDCKSLKS--LPAGI-HLE-FLKELDLSGCS-KL--KRLPD-ISSAANIEEMFLNGTA-IE-ELPSSI  335 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~--lP~~i-~L~-~L~~L~Ls~~~-~l--~~lP~-i~~L~~L~~L~Ls~n~-l~-~LP~~i  335 (369)
                      +..+++|+.|++++|..+..  ++..+ .++ +|++|+|++|. .+  ..+|. ++++++|++|+|++|. ++ ..|..+
T Consensus       164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l  243 (336)
T 2ast_B          164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  243 (336)
T ss_dssp             HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence            44567777777777733443  45545 677 77777777753 23  34555 5677778888887776 54 566677


Q ss_pred             cCCCCCcEEecccCCCCCcCCc---cccCCCCCCCC
Q 017543          336 ECLYKLLHLDLEDCKSLKSLPS---GLFLCRNKCRI  368 (369)
Q Consensus       336 ~~L~~L~~L~Ls~n~~l~~lP~---~i~~L~~L~~L  368 (369)
                      +++++|++|+|++|.  ...|.   .+..+++|+.|
T Consensus       244 ~~l~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          244 FQLNYLQHLSLSRCY--DIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             GGCTTCCEEECTTCT--TCCGGGGGGGGGCTTCCEE
T ss_pred             hCCCCCCEeeCCCCC--CCCHHHHHHHhcCCCCCEE
Confidence            777788888887775  22333   35556666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.65  E-value=4e-08  Score=94.04  Aligned_cols=80  Identities=14%  Similarity=0.191  Sum_probs=39.7

Q ss_pred             ceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCE-EEeecCCCcccC-ccccCCCCCcE
Q 017543          270 NTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEE-MFLNGTAIEELP-SSIECLYKLLH  343 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~-L~Ls~n~l~~LP-~~i~~L~~L~~  343 (369)
                      .+++.|+|++| .++.+|.. + +|++|++|+|++|..++.+|.  +.+|++|++ +.+++|+|..+| ..++.|++|++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~  108 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  108 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence            34555555555 35555543 2 455555555555443444443  445555443 333445555553 23455555555


Q ss_pred             EecccCC
Q 017543          344 LDLEDCK  350 (369)
Q Consensus       344 L~Ls~n~  350 (369)
                      |++++|+
T Consensus       109 L~l~~n~  115 (350)
T 4ay9_X          109 LLISNTG  115 (350)
T ss_dssp             EEEEEEC
T ss_pred             ccccccc
Confidence            5555554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.63  E-value=8.7e-08  Score=99.06  Aligned_cols=86  Identities=28%  Similarity=0.332  Sum_probs=43.8

Q ss_pred             ceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCcccc-------------
Q 017543          270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIE-------------  336 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~-------------  336 (369)
                      ++|+.|+|++| .+..+|.  .+++|++|+|++ +.+..+|.  .+++|++|+|++|.|+.+|..+.             
T Consensus        61 ~~L~~L~L~~N-~l~~lp~--~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA--LPPELRTLEVSG-NQLTSLPV--LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC--CCTTCCEEEECS-CCCSCCCC--CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCcEEEecCC-CCCCCCC--cCCCCCEEEcCC-CcCCcCCC--CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence            45556666655 3555554  345555555555 33445554  34445555555444444443110             


Q ss_pred             ----CCCCCcEEecccCCCCCcCCccccCC
Q 017543          337 ----CLYKLLHLDLEDCKSLKSLPSGLFLC  362 (369)
Q Consensus       337 ----~L~~L~~L~Ls~n~~l~~lP~~i~~L  362 (369)
                          .+++|++|+|++|+ +..+|..+.+|
T Consensus       135 ~lp~~l~~L~~L~Ls~N~-l~~l~~~~~~L  163 (622)
T 3g06_A          135 SLPVLPPGLQELSVSDNQ-LASLPALPSEL  163 (622)
T ss_dssp             CCCCCCTTCCEEECCSSC-CSCCCCCCTTC
T ss_pred             cCCCCCCCCCEEECcCCc-CCCcCCccCCC
Confidence                12566677777665 55555544433

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.58  E-value=4.1e-09  Score=99.62  Aligned_cols=99  Identities=14%  Similarity=0.238  Sum_probs=51.7

Q ss_pred             ccceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecC-CCc--ccCccccCCCC
Q 017543          268 HLNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGT-AIE--ELPSSIECLYK  340 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n-~l~--~LP~~i~~L~~  340 (369)
                      .+++|+.|++++|. +..  +|..+ .+++|++|+|++|......|. ++.+++|++|+|++| .++  .+|..++++++
T Consensus        91 ~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~  169 (336)
T 2ast_B           91 SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  169 (336)
T ss_dssp             CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence            45666666666663 332  44444 566666666665432223443 555566666666665 454  25555555556


Q ss_pred             CcEEecccC-CCCCc--CCccccCCC-CCCCC
Q 017543          341 LLHLDLEDC-KSLKS--LPSGLFLCR-NKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n-~~l~~--lP~~i~~L~-~L~~L  368 (369)
                      |++|+|++| . +..  +|..+..++ +|++|
T Consensus       170 L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          170 LDELNLSWCFD-FTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             CCEEECCCCTT-CCHHHHHHHHHHSCTTCCEE
T ss_pred             CCEEcCCCCCC-cChHHHHHHHHhcccCCCEE
Confidence            666666555 3 221  444444555 44443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.46  E-value=1.8e-08  Score=97.48  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=17.4

Q ss_pred             CCCCCEEEeecCCCcc-----cCccc-cCCCCCcEEecccCC
Q 017543          315 AANIEEMFLNGTAIEE-----LPSSI-ECLYKLLHLDLEDCK  350 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~-----LP~~i-~~L~~L~~L~Ls~n~  350 (369)
                      +++|+.|+|++|.|..     +|..+ +++++|++|+|++|+
T Consensus       273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            4445555555554443     44444 344555555555444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.30  E-value=1.4e-07  Score=87.31  Aligned_cols=98  Identities=19%  Similarity=0.211  Sum_probs=68.7

Q ss_pred             ccceeeE--EeecCCCCCCCcCccc-----cccCccEEEccCCCCCCcCC---C-CCCCCCCCEEEeecCCCcccCcccc
Q 017543          268 HLNTLVV--LNLRDCKSLKSLPAGI-----HLEFLKELDLSGCSKLKRLP---D-ISSAANIEEMFLNGTAIEELPSSIE  336 (369)
Q Consensus       268 ~l~~L~~--L~L~~n~~l~~lP~~i-----~L~~L~~L~Ls~~~~l~~lP---~-i~~L~~L~~L~Ls~n~l~~LP~~i~  336 (369)
                      ..+.|..  ++++.| ....++..+     ++++|+.|+|++ |.+..++   . ++.+++|+.|+|++|.|..+ ..++
T Consensus       139 ~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~  215 (267)
T 3rw6_A          139 SDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELD  215 (267)
T ss_dssp             GCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGG
T ss_pred             CCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhh
Confidence            3444554  556666 344454433     578999999998 4555544   4 56889999999999999877 4466


Q ss_pred             CCC--CCcEEecccCCCCCcCCc-------cccCCCCCCCC
Q 017543          337 CLY--KLLHLDLEDCKSLKSLPS-------GLFLCRNKCRI  368 (369)
Q Consensus       337 ~L~--~L~~L~Ls~n~~l~~lP~-------~i~~L~~L~~L  368 (369)
                      .|.  +|++|+|++|++.+.+|.       -+..+++|..|
T Consensus       216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~L  256 (267)
T 3rw6_A          216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRL  256 (267)
T ss_dssp             GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEE
T ss_pred             hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeE
Confidence            666  899999999997777773       25667777765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.27  E-value=1.4e-07  Score=91.19  Aligned_cols=102  Identities=19%  Similarity=0.109  Sum_probs=79.7

Q ss_pred             ccccceeeEEeecCCCCCC------CcCccc-cccCccEEEccCCCCC----CcCCC-CCCCCCCCEEEeecCCCcc---
Q 017543          266 SQHLNTLVVLNLRDCKSLK------SLPAGI-HLEFLKELDLSGCSKL----KRLPD-ISSAANIEEMFLNGTAIEE---  330 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~------~lP~~i-~L~~L~~L~Ls~~~~l----~~lP~-i~~L~~L~~L~Ls~n~l~~---  330 (369)
                      +..+++|+.|+|++| .+.      .+|..+ .+++|++|+|++|..-    ..+|. +..+++|++|+|++|.|..   
T Consensus       183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  261 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  261 (386)
T ss_dssp             HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence            345778999999999 465      344466 8899999999985531    66786 8899999999999999874   


Q ss_pred             --cCccc--cCCCCCcEEecccCCCCC----cCCccc-cCCCCCCCC
Q 017543          331 --LPSSI--ECLYKLLHLDLEDCKSLK----SLPSGL-FLCRNKCRI  368 (369)
Q Consensus       331 --LP~~i--~~L~~L~~L~Ls~n~~l~----~lP~~i-~~L~~L~~L  368 (369)
                        +|..+  +++++|++|+|++|.+..    .+|..+ .++++|+.|
T Consensus       262 ~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L  308 (386)
T 2ca6_A          262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL  308 (386)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEE
Confidence              57777  459999999999998444    388888 557888765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=2.4e-06  Score=80.72  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             cceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCC-EEEeecCCCcccCc-cccCCCCCc
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIE-EMFLNGTAIEELPS-SIECLYKLL  342 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~-~L~Ls~n~l~~LP~-~i~~L~~L~  342 (369)
                      +.+|+.|+|++| .+..+|...  .+.+|+.|+|.+|  +..+++  +.+|.+|+ .|+|.+ .++.++. .+..+.+|+
T Consensus       225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            678999999998 589999876  8999999999984  888996  99999999 999988 8888874 579999999


Q ss_pred             EEecccCCCCCcCCc-cccCCCCCCCC
Q 017543          343 HLDLEDCKSLKSLPS-GLFLCRNKCRI  368 (369)
Q Consensus       343 ~L~Ls~n~~l~~lP~-~i~~L~~L~~L  368 (369)
                      .|++++|+ +..|+. .+.++++|+.|
T Consensus       301 ~l~l~~n~-i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          301 YVLATGDK-ITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEEECSSC-CCEECTTTTCTTCCCCEE
T ss_pred             EEEeCCCc-cCccchhhhcCCcchhhh
Confidence            99998888 777876 46678888865

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.00  E-value=1.1e-06  Score=84.37  Aligned_cols=101  Identities=21%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             ccccc-eeeEEeecCCCCCCCc-Cccc-cc-----cCccEEEccCCCCCCcCC-C-CC----CC-CCCCEEEeecCCCcc
Q 017543          266 SQHLN-TLVVLNLRDCKSLKSL-PAGI-HL-----EFLKELDLSGCSKLKRLP-D-IS----SA-ANIEEMFLNGTAIEE  330 (369)
Q Consensus       266 ~~~l~-~L~~L~L~~n~~l~~l-P~~i-~L-----~~L~~L~Ls~~~~l~~lP-~-i~----~L-~~L~~L~Ls~n~l~~  330 (369)
                      +..++ +|+.|+|++| .++.. +..+ .+     ++|++|+|++|. ++..+ . ++    .+ ++|++|+|++|.|..
T Consensus        46 l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  123 (362)
T 3goz_A           46 FANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSS  123 (362)
T ss_dssp             HHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence            34566 8999999999 46654 4444 44     899999999954 55444 3 33    34 899999999999987


Q ss_pred             cCcc-----ccCC-CCCcEEecccCCCCC----cCCccccCCC-CCCCC
Q 017543          331 LPSS-----IECL-YKLLHLDLEDCKSLK----SLPSGLFLCR-NKCRI  368 (369)
Q Consensus       331 LP~~-----i~~L-~~L~~L~Ls~n~~l~----~lP~~i~~L~-~L~~L  368 (369)
                      .+..     +..+ ++|++|+|++|.+..    .++..+..++ +|++|
T Consensus       124 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L  172 (362)
T 3goz_A          124 KSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSL  172 (362)
T ss_dssp             SCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEe
Confidence            6642     3343 689999999998432    4555555554 66654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.94  E-value=1.6e-06  Score=83.20  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=67.0

Q ss_pred             ceeeEEeecCCCCCCCcCccc------c-ccCccEEEccCCCCCC-----cCCC-CCCCC-CCCEEEeecCCCcccCc--
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI------H-LEFLKELDLSGCSKLK-----RLPD-ISSAA-NIEEMFLNGTAIEELPS--  333 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i------~-L~~L~~L~Ls~~~~l~-----~lP~-i~~L~-~L~~L~Ls~n~l~~LP~--  333 (369)
                      ++|+.|+|++|. ++..+...      . .++|++|+|++| .++     .++. +..+. +|++|+|++|.|...+.  
T Consensus       109 ~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~  186 (362)
T 3goz_A          109 FTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAE  186 (362)
T ss_dssp             TTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHH
Confidence            689999999994 66655432      2 258999999984 455     3333 44555 89999999999975542  


Q ss_pred             ---cccCC-CCCcEEecccCCCCCc-----CCccccCC-CCCCCC
Q 017543          334 ---SIECL-YKLLHLDLEDCKSLKS-----LPSGLFLC-RNKCRI  368 (369)
Q Consensus       334 ---~i~~L-~~L~~L~Ls~n~~l~~-----lP~~i~~L-~~L~~L  368 (369)
                         .+..+ ++|++|+|++|. ++.     +|..+..+ ++|+.|
T Consensus       187 l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L  230 (362)
T 3goz_A          187 LAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSL  230 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEE
T ss_pred             HHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEE
Confidence               34455 599999999998 555     67766653 366654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.87  E-value=6.3e-06  Score=76.11  Aligned_cols=77  Identities=31%  Similarity=0.430  Sum_probs=61.0

Q ss_pred             ccceeeEEeecCCCCCCCcC---ccc-cccCccEEEccCCCCCCcCCCCCCCC--CCCEEEeecCCCc-ccCc-------
Q 017543          268 HLNTLVVLNLRDCKSLKSLP---AGI-HLEFLKELDLSGCSKLKRLPDISSAA--NIEEMFLNGTAIE-ELPS-------  333 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP---~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~--~L~~L~Ls~n~l~-~LP~-------  333 (369)
                      ++++|+.|+|++| .+..++   ..+ .+++|+.|+|++ |.+..+.++..+.  +|++|+|++|.+. .+|.       
T Consensus       168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            4678999999999 466544   555 899999999998 6677776544444  9999999999997 5663       


Q ss_pred             cccCCCCCcEEec
Q 017543          334 SIECLYKLLHLDL  346 (369)
Q Consensus       334 ~i~~L~~L~~L~L  346 (369)
                      .+..+++|+.||=
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            3678999999964

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.85  E-value=7.8e-07  Score=87.46  Aligned_cols=101  Identities=22%  Similarity=0.275  Sum_probs=74.1

Q ss_pred             ccccceeeEEeecCCCCCCC-cCccc--ccc----CccEEEccCCCCCC-----cCCC-CCCCCCCCEEEeecCCCccc-
Q 017543          266 SQHLNTLVVLNLRDCKSLKS-LPAGI--HLE----FLKELDLSGCSKLK-----RLPD-ISSAANIEEMFLNGTAIEEL-  331 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~-lP~~i--~L~----~L~~L~Ls~~~~l~-----~lP~-i~~L~~L~~L~Ls~n~l~~L-  331 (369)
                      +..+++|+.|+|++|. +.. .+..+  .+.    +|++|+|++|. +.     .+|. +..+++|++|+|++|.+... 
T Consensus        52 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           52 LRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            4557899999999994 543 23333  355    79999999965 54     4676 89999999999999998732 


Q ss_pred             Cccc-----cCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543          332 PSSI-----ECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI  368 (369)
Q Consensus       332 P~~i-----~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L  368 (369)
                      +..+     ..+.+|++|++++|.+..    .+|..+..+++|++|
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  175 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL  175 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEE
Confidence            3333     236789999999998444    356667777888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.80  E-value=1.6e-06  Score=85.20  Aligned_cols=99  Identities=19%  Similarity=0.215  Sum_probs=54.9

Q ss_pred             ccceeeEEeecCCCCCCCc-----Cccc--cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCcc----
Q 017543          268 HLNTLVVLNLRDCKSLKSL-----PAGI--HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIEE----  330 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~l-----P~~i--~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~~----  330 (369)
                      .+++|+.|++++| .++..     ...+  .+++|++|+|++| .++.     +|. +.++++|++|+|++|.+..    
T Consensus       225 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  302 (461)
T 1z7x_W          225 SKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR  302 (461)
T ss_dssp             HCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred             hCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence            4566666777666 34321     1222  3566777777764 3444     454 5556677777777776652    


Q ss_pred             -cCcccc-CCCCCcEEecccCCCCCc----CCccccCCCCCCCC
Q 017543          331 -LPSSIE-CLYKLLHLDLEDCKSLKS----LPSGLFLCRNKCRI  368 (369)
Q Consensus       331 -LP~~i~-~L~~L~~L~Ls~n~~l~~----lP~~i~~L~~L~~L  368 (369)
                       ++..+. ..++|++|+|++|.+...    +|..+..+++|+.|
T Consensus       303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence             222221 225677777777763332    45566666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.69  E-value=5.2e-06  Score=84.23  Aligned_cols=98  Identities=19%  Similarity=0.162  Sum_probs=52.1

Q ss_pred             ccceeeEEeecCCCCCC-----CcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCC----cccCcccc
Q 017543          268 HLNTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAI----EELPSSIE  336 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~-----~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l----~~LP~~i~  336 (369)
                      .+++|+.|++++|. +.     .++..+ .+++|+.|+|++| .+..+|. ++++++|++|+++.+..    ...+..++
T Consensus       190 ~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          190 HNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             cCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            34555566665552 32     222223 4556666666653 3444554 55556666666653211    13344555


Q ss_pred             CCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          337 CLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       337 ~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+++|+.|+++++. ...+|..+..+++|++|
T Consensus       268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEE
T ss_pred             ccccccccCccccc-hhHHHHHHhhcCCCcEE
Confidence            66666666666543 56677766666676655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.67  E-value=3.3e-06  Score=85.66  Aligned_cols=98  Identities=21%  Similarity=0.246  Sum_probs=47.0

Q ss_pred             cceeeEEeecCCCCCCC--cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCC--Cc--ccCccc
Q 017543          269 LNTLVVLNLRDCKSLKS--LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTA--IE--ELPSSI  335 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~--lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~--l~--~LP~~i  335 (369)
                      +++|+.|+|++|..++.  ++... .+++|++|+|++|. +..     ++. ...+++|+.|+|++|.  +.  .++.-+
T Consensus       129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            45666666666533332  33333 45666666666543 221     222 2355566666666554  21  222223


Q ss_pred             cCCCCCcEEecccCCCCCcCCccccCCCCCCC
Q 017543          336 ECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       336 ~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      .++++|++|+|++|..++.+|..+..+++|++
T Consensus       208 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  239 (594)
T 2p1m_B          208 TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEE  239 (594)
T ss_dssp             HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSE
T ss_pred             HhCCCCcEEecCCCCcHHHHHHHHhcCCcceE
Confidence            34566666666655334444444444444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.66  E-value=2.2e-05  Score=79.57  Aligned_cols=101  Identities=14%  Similarity=0.036  Sum_probs=62.1

Q ss_pred             cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCC---CcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKL---KRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKL  341 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l---~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L  341 (369)
                      ..+++|+.|++++| .+..+|..+ .+++|+.|+++.++..   ...+. ++.+++|+.|+++++....+|..+..+++|
T Consensus       217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L  295 (592)
T 3ogk_B          217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI  295 (592)
T ss_dssp             HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred             hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence            35677888888877 466677666 7777787777753332   22233 666777777777766666677766777777


Q ss_pred             cEEecccCCCCCc-CCccccCCCCCCCC
Q 017543          342 LHLDLEDCKSLKS-LPSGLFLCRNKCRI  368 (369)
Q Consensus       342 ~~L~Ls~n~~l~~-lP~~i~~L~~L~~L  368 (369)
                      ++|+|++|.+... ++.-+..+++|++|
T Consensus       296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L  323 (592)
T 3ogk_B          296 RKLDLLYALLETEDHCTLIQKCPNLEVL  323 (592)
T ss_dssp             CEEEETTCCCCHHHHHHHHTTCTTCCEE
T ss_pred             cEEecCCCcCCHHHHHHHHHhCcCCCEE
Confidence            7777777662221 11224455555544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.60  E-value=2.1e-05  Score=67.97  Aligned_cols=83  Identities=16%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             ceeeEEeecCCCCCCCcC-ccc-cccCccEEEccCCCCCCcCC--CCCCC----CCCCEEEeecC-CCc--ccCccccCC
Q 017543          270 NTLVVLNLRDCKSLKSLP-AGI-HLEFLKELDLSGCSKLKRLP--DISSA----ANIEEMFLNGT-AIE--ELPSSIECL  338 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP-~~i-~L~~L~~L~Ls~~~~l~~lP--~i~~L----~~L~~L~Ls~n-~l~--~LP~~i~~L  338 (369)
                      -.|+.|++++|. +.... ..+ .+++|+.|+|++|..++.--  .|..+    ++|++|+|++| +|+  .+ ..+.++
T Consensus        61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHF  138 (176)
T ss_dssp             CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGC
T ss_pred             ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcC
Confidence            369999999995 54321 223 79999999999998776533  25554    47999999998 587  34 346789


Q ss_pred             CCCcEEecccCCCCCc
Q 017543          339 YKLLHLDLEDCKSLKS  354 (369)
Q Consensus       339 ~~L~~L~Ls~n~~l~~  354 (369)
                      ++|++|+|++|..++.
T Consensus       139 ~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TTCCEEEEESCTTCCC
T ss_pred             CCCCEEECCCCCCCCc
Confidence            9999999999985543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.44  E-value=1.7e-05  Score=76.72  Aligned_cols=100  Identities=15%  Similarity=0.069  Sum_probs=67.2

Q ss_pred             cccceeeEEeecCCCCCCCcC-----ccc--cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc----
Q 017543          267 QHLNTLVVLNLRDCKSLKSLP-----AGI--HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE----  329 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP-----~~i--~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~----  329 (369)
                      ..+.+|+.|+|++| .++...     ..+  ..++|+.|+|++| .++.     ++. +..+++|++|+|++|.|.    
T Consensus       123 ~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~  200 (372)
T 3un9_A          123 PVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL  200 (372)
T ss_dssp             HHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH
T ss_pred             HHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH
Confidence            34667888999888 454322     122  2467899999985 4543     333 567888999999999886    


Q ss_pred             -ccCccccCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543          330 -ELPSSIECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 -~LP~~i~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L  368 (369)
                       .|+..+...++|++|+|++|.+..    .++..+...++|+.|
T Consensus       201 ~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L  244 (372)
T 3un9_A          201 ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL  244 (372)
T ss_dssp             HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEE
Confidence             356677788889999999988322    244444455666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.41  E-value=2.6e-05  Score=75.41  Aligned_cols=81  Identities=17%  Similarity=0.139  Sum_probs=64.0

Q ss_pred             cceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----cc
Q 017543          269 LNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----EL  331 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~L  331 (369)
                      ..+|+.|+|++| .++.     ++..+ .+++|++|+|++|. ++.     +++ +..+++|+.|+|++|.|.     .+
T Consensus       154 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          154 QCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             TCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             CCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            467999999999 4643     55555 68899999999954 553     344 677789999999999997     35


Q ss_pred             CccccCCCCCcEEecccCCC
Q 017543          332 PSSIECLYKLLHLDLEDCKS  351 (369)
Q Consensus       332 P~~i~~L~~L~~L~Ls~n~~  351 (369)
                      +..+...++|++|+|++|.+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSC
T ss_pred             HHHHHhCCCCCEEeccCCCC
Confidence            56677789999999999983

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.38  E-value=2e-05  Score=68.43  Aligned_cols=81  Identities=12%  Similarity=0.165  Sum_probs=54.0

Q ss_pred             ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEe--ecCCCcc---
Q 017543          268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFL--NGTAIEE---  330 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~L--s~n~l~~---  330 (369)
                      ..++|+.|+|++|. ++.     +...+ ..++|++|+|++| .++.     +.. +...++|++|+|  ++|.|..   
T Consensus        63 ~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~  140 (185)
T 1io0_A           63 TNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  140 (185)
T ss_dssp             TCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             hCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence            34678888888883 543     33333 4567888888874 4543     333 566677888888  7777762   


Q ss_pred             --cCccccCCCCCcEEecccCC
Q 017543          331 --LPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       331 --LP~~i~~L~~L~~L~Ls~n~  350 (369)
                        |...+...++|++|+|++|.
T Consensus       141 ~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          141 MEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHhCCCcCEEeccCCC
Confidence              55556667788888888776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.34  E-value=1.5e-05  Score=80.82  Aligned_cols=99  Identities=17%  Similarity=0.226  Sum_probs=70.1

Q ss_pred             ccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCc--CCC-CCCCCCCCEEEeecCCCcc-----cCccccC
Q 017543          268 HLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKR--LPD-ISSAANIEEMFLNGTAIEE-----LPSSIEC  337 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~--lP~-i~~L~~L~~L~Ls~n~l~~-----LP~~i~~  337 (369)
                      .+++|+.|+|++|......+..+  .+++|+.|+|++|..++.  ++. +.++++|++|+|++|.+..     ++.-...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            46789999999985222334444  589999999999866665  555 5589999999999998653     3333457


Q ss_pred             CCCCcEEecccCCCCCcCC-----ccccCCCCCCCC
Q 017543          338 LYKLLHLDLEDCKSLKSLP-----SGLFLCRNKCRI  368 (369)
Q Consensus       338 L~~L~~L~Ls~n~~l~~lP-----~~i~~L~~L~~L  368 (369)
                      +++|++|++++|.  +.++     .-+.++++|++|
T Consensus       183 ~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L  216 (594)
T 2p1m_B          183 YTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSL  216 (594)
T ss_dssp             CCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEE
T ss_pred             CCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEE
Confidence            7899999999886  2233     223445777665

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.14  E-value=0.00057  Score=64.24  Aligned_cols=86  Identities=15%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             cccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCcc-EEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcc
Q 017543          256 IFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLK-ELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEE  330 (369)
Q Consensus       256 ~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~-~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~  330 (369)
                      .+..++... +..+.+|+.|+|.+|  +..++...  .+.+|+ .|+|.+  .++.+++  +.+|++|+.|+|++|.++.
T Consensus       237 ~i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          237 NATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             CCCEECTTT-TTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CcceecHhh-hhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            356666544 567999999999997  78888776  899999 999996  6888885  9999999999999999999


Q ss_pred             cCc-cccCCCCCcEEec
Q 017543          331 LPS-SIECLYKLLHLDL  346 (369)
Q Consensus       331 LP~-~i~~L~~L~~L~L  346 (369)
                      ++. .+.++++|+.|+.
T Consensus       312 I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          312 LGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ECTTTTCTTCCCCEEEC
T ss_pred             cchhhhcCCcchhhhcc
Confidence            987 4789999998864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.98  E-value=0.00015  Score=62.82  Aligned_cols=99  Identities=12%  Similarity=0.208  Sum_probs=69.6

Q ss_pred             ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCcc-----
Q 017543          268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIEE-----  330 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~~-----  330 (369)
                      ..+.|+.|+|++|+.++.     +...+ ..++|++|+|++|. ++.     +.+ +...++|++|+|++|.|..     
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            456789999999833543     34444 56899999999954 543     333 5566889999999999974     


Q ss_pred             cCccccCCCCCcEEec--ccCCCCCc-----CCccccCCCCCCCC
Q 017543          331 LPSSIECLYKLLHLDL--EDCKSLKS-----LPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~i~~L~~L~~L~L--s~n~~l~~-----lP~~i~~L~~L~~L  368 (369)
                      |...+...++|++|+|  ++|. ++.     |-..+...++|++|
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L  156 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF  156 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEE
Confidence            6778888899999999  7787 432     33344444555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.78  E-value=0.00031  Score=67.60  Aligned_cols=59  Identities=12%  Similarity=0.177  Sum_probs=30.3

Q ss_pred             ccCccEEEccCCCCCCcCCC----CCCCCCCCEEEeecCCCcc-----cCccccCCCCCcEEecccCC
Q 017543          292 LEFLKELDLSGCSKLKRLPD----ISSAANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       292 L~~L~~L~Ls~~~~l~~lP~----i~~L~~L~~L~Ls~n~l~~-----LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      +++|++|+|++|......+.    .+.+++|+.|+|+.|.|..     |+..+.++++|+.|+|++|.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            45666666655432211111    2245566666666665542     44444555666666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.76  E-value=0.0021  Score=52.42  Aligned_cols=52  Identities=23%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             EEeecCCCCCC--CcCccccccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCC
Q 017543          274 VLNLRDCKSLK--SLPAGIHLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAI  328 (369)
Q Consensus       274 ~L~L~~n~~l~--~lP~~i~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l  328 (369)
                      .++.+++ .+.  .+|..+ -.+|+.|+|++ |.|..||.  +..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~-~L~~~~vP~~l-p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTAF-PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSS-CCCTTTSCSCC-CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCC-CCccccCCCCC-CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence            5666666 466  777654 23477788887 66777775  67777888888887755

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.68  E-value=0.00033  Score=67.36  Aligned_cols=99  Identities=14%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             cceeeEEeecCCCCCCC-cCccc---cccCccEEEccCCC-------CCCcCCC-C--CCCCCCCEEEeecCCCc-ccCc
Q 017543          269 LNTLVVLNLRDCKSLKS-LPAGI---HLEFLKELDLSGCS-------KLKRLPD-I--SSAANIEEMFLNGTAIE-ELPS  333 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~-lP~~i---~L~~L~~L~Ls~~~-------~l~~lP~-i--~~L~~L~~L~Ls~n~l~-~LP~  333 (369)
                      +++|+.|.|..|. +.. ....+   .+++|+.|+|+.+.       .+..+.. +  +.+++|++|+|.+|.+. ..+.
T Consensus       192 ~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~  270 (362)
T 2ra8_A          192 RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVE  270 (362)
T ss_dssp             CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHH
T ss_pred             CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHH
Confidence            7889999998773 321 11112   58899999986321       1222222 2  35899999999999886 3333


Q ss_pred             cc---cCCCCCcEEecccCCCCC----cCCccccCCCCCCCC
Q 017543          334 SI---ECLYKLLHLDLEDCKSLK----SLPSGLFLCRNKCRI  368 (369)
Q Consensus       334 ~i---~~L~~L~~L~Ls~n~~l~----~lP~~i~~L~~L~~L  368 (369)
                      .+   +.+++|++|+|+.|.+..    .|+..+..+++|+.|
T Consensus       271 ~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L  312 (362)
T 2ra8_A          271 MFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI  312 (362)
T ss_dssp             HHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred             HHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence            33   368899999999987332    255555556666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.52  E-value=0.00096  Score=57.45  Aligned_cols=82  Identities=17%  Similarity=0.289  Sum_probs=55.7

Q ss_pred             CcCccc-cccCccEEEccCCCCCCcC--CCCCCCCCCCEEEeecC-CCccc-CccccCC----CCCcEEecccCCCCCc-
Q 017543          285 SLPAGI-HLEFLKELDLSGCSKLKRL--PDISSAANIEEMFLNGT-AIEEL-PSSIECL----YKLLHLDLEDCKSLKS-  354 (369)
Q Consensus       285 ~lP~~i-~L~~L~~L~Ls~~~~l~~l--P~i~~L~~L~~L~Ls~n-~l~~L-P~~i~~L----~~L~~L~Ls~n~~l~~-  354 (369)
                      .+|... .-..|+.|||++|. ++..  ..+..|++|+.|+|++| .|+.- =..|..+    ++|++|+|++|..++. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             cCCcccCCCceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            346544 44579999999987 5443  33789999999999999 57621 1235554    3799999999975442 


Q ss_pred             -CCccccCCCCCCCC
Q 017543          355 -LPSGLFLCRNKCRI  368 (369)
Q Consensus       355 -lP~~i~~L~~L~~L  368 (369)
                       + ..+..+++|++|
T Consensus       131 Gl-~~L~~~~~L~~L  144 (176)
T 3e4g_A          131 GI-IALHHFRNLKYL  144 (176)
T ss_dssp             HH-HHGGGCTTCCEE
T ss_pred             HH-HHHhcCCCCCEE
Confidence             1 234556666665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.27  E-value=0.0093  Score=57.89  Aligned_cols=87  Identities=6%  Similarity=0.081  Sum_probs=63.3

Q ss_pred             ccccceeeEEeecCCCCCC-----CcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-c
Q 017543          266 SQHLNTLVVLNLRDCKSLK-----SLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-I  335 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~-----~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i  335 (369)
                      +..+.+|+.+.+.++ .+.     .++...  .+.+|+.+.|.+  .+..++.  +.+|.+|+.|.|.. .++.++.. +
T Consensus       267 F~~c~~L~~l~l~~~-~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF  342 (401)
T 4fdw_A          267 FYYCPELAEVTTYGS-TFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAF  342 (401)
T ss_dssp             TTTCTTCCEEEEESS-CCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSS
T ss_pred             hhCCCCCCEEEeCCc-cccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhC
Confidence            456788888888776 233     455544  788889888884  3778885  88889999999954 47777654 6


Q ss_pred             cCCCCCcEEecccCCCCCcCCcc
Q 017543          336 ECLYKLLHLDLEDCKSLKSLPSG  358 (369)
Q Consensus       336 ~~L~~L~~L~Ls~n~~l~~lP~~  358 (369)
                      .++ +|+.|++.+|. ...++..
T Consensus       343 ~~~-~L~~l~l~~n~-~~~l~~~  363 (401)
T 4fdw_A          343 NNT-GIKEVKVEGTT-PPQVFEK  363 (401)
T ss_dssp             SSS-CCCEEEECCSS-CCBCCCS
T ss_pred             CCC-CCCEEEEcCCC-Ccccccc
Confidence            777 89999999887 4445443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.74  E-value=0.015  Score=47.22  Aligned_cols=51  Identities=24%  Similarity=0.389  Sum_probs=31.3

Q ss_pred             EEEccCCCCCC--cCCC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEecccCC
Q 017543          297 ELDLSGCSKLK--RLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDLEDCK  350 (369)
Q Consensus       297 ~L~Ls~~~~l~--~lP~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~Ls~n~  350 (369)
                      .++.++ +.++  .+|. +.  .+|++|+|++|.|+.||.. +..|++|++|+|.+|+
T Consensus        12 ~v~Cs~-~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR-RGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS-SCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC-CCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            455555 4455  6664 33  3566777777777777665 3566677777776665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.68  E-value=0.027  Score=54.60  Aligned_cols=90  Identities=23%  Similarity=0.289  Sum_probs=57.7

Q ss_pred             eeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEe
Q 017543          271 TLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (369)
Q Consensus       271 ~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~  345 (369)
                      +|+.+.+.++  +..++...  .+.+|+.++|.+ +.+..+|.  +. +.+|+.+.|.. .++.|+.. +.++.+|+.|+
T Consensus       158 ~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~  232 (401)
T 4fdw_A          158 TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIE  232 (401)
T ss_dssp             CCCEEECCTT--CCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEE
T ss_pred             CceEEEeCCC--ccEehHHHhhCcccCCeeecCC-CcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEe
Confidence            5777777653  56666544  677777887776 56777775  44 57777777763 46666654 56777788888


Q ss_pred             cccCCCCCcCCccccCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCR  367 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~  367 (369)
                      |.++  +..|+...+.-.+|+.
T Consensus       233 l~~~--l~~I~~~aF~~~~L~~  252 (401)
T 4fdw_A          233 IPEN--VSTIGQEAFRESGITT  252 (401)
T ss_dssp             CCTT--CCEECTTTTTTCCCSE
T ss_pred             cCCC--ccCccccccccCCccE
Confidence            7653  5566655444344443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.66  E-value=0.011  Score=56.75  Aligned_cols=97  Identities=11%  Similarity=0.116  Sum_probs=73.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+.+|+.+.+.++  +..++...  .+.+|+.++|.+  .++.+++  +.+|.+|+.++|..+ ++.++.. +.++.+
T Consensus       293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~  367 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN  367 (394)
T ss_dssp             TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred             ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence            345677888888765  66776654  788999999974  4788885  889999999999766 8888664 788999


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKCRIR  369 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L~  369 (369)
                      |+.++|..+  +..+...+.++++|+.+|
T Consensus       368 L~~i~lp~~--~~~~~~~F~~c~~L~~IK  394 (394)
T 4fs7_A          368 LKKVELPKR--LEQYRYDFEDTTKFKWIK  394 (394)
T ss_dssp             CCEEEEEGG--GGGGGGGBCTTCEEEEEC
T ss_pred             CCEEEECCC--CEEhhheecCCCCCcEEC
Confidence            999999754  455667788888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.20  E-value=0.06  Score=51.05  Aligned_cols=54  Identities=28%  Similarity=0.388  Sum_probs=24.0

Q ss_pred             cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEec
Q 017543          291 HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLDL  346 (369)
Q Consensus       291 ~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~L  346 (369)
                      .+.+|+.+.+..  .+..++.  +..+.+|+.+.+.++.++.|+.. +.++.+|+.+.|
T Consensus       261 ~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          261 NCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             TCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             eeehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            344444444432  2344443  44444555555444444444332 344444444444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.05  E-value=0.088  Score=50.36  Aligned_cols=79  Identities=14%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             cccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKL  341 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L  341 (369)
                      .++..|+.+.+...  +..++...  .+.+|+.+.|..  .++.+++  +.+|.+|+.+.|.. .++.++.. +.++.+|
T Consensus       285 ~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L  359 (394)
T 4gt6_A          285 MNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTAL  359 (394)
T ss_dssp             TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTC
T ss_pred             ccccccccccCCCc--ccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCC
Confidence            45666777777543  56666655  678888888875  3677775  77888888888854 47777654 6778888


Q ss_pred             cEEecccCC
Q 017543          342 LHLDLEDCK  350 (369)
Q Consensus       342 ~~L~Ls~n~  350 (369)
                      +.+++.++.
T Consensus       360 ~~i~~~~~~  368 (394)
T 4gt6_A          360 NNIEYSGSR  368 (394)
T ss_dssp             CEEEESSCH
T ss_pred             CEEEECCce
Confidence            888887654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.85  E-value=0.16  Score=48.44  Aligned_cols=96  Identities=15%  Similarity=0.321  Sum_probs=72.1

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+..|+.+.+.++  +..++...  ++..|+.+.+.  +.+..+++  +.++.+|+.++|.. .++.+... +..+.+
T Consensus       261 F~~c~~L~~i~lp~~--~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          261 FDSCAYLASVKMPDS--VVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTCSSCCEEECCTT--CCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred             eeecccccEEecccc--cceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCC
Confidence            345677888887665  34555544  78899999997  45888996  88999999999975 47777654 788999


Q ss_pred             CcEEecccCCCCCcCCcc-ccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSG-LFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~-i~~L~~L~~L  368 (369)
                      |+.+.|..+  +..|+.. +.++.+|+.+
T Consensus       336 L~~i~ip~s--v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          336 LERIAIPSS--VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             CCEEEECTT--CCBCCGGGGTTCTTCCEE
T ss_pred             CCEEEECcc--cCEEhHhHhhCCCCCCEE
Confidence            999999643  6677754 5567777754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.57  E-value=0.14  Score=48.44  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=59.9

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+.+|..+.+..+  +..++...  .+.+|+.+.+.+ +.++.+++  +.++.+|+.+.|.. .++.|+.. +.++.+
T Consensus       259 F~~~~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~  334 (379)
T 4h09_A          259 LQNCTALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKA  334 (379)
T ss_dssp             TTTCTTCCEEEECCC--CSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTT
T ss_pred             cceeehhcccccccc--ceeccccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCC
Confidence            345667777777654  66777655  789999999986 66888886  88999999999964 47778664 678888


Q ss_pred             CcEEecc
Q 017543          341 LLHLDLE  347 (369)
Q Consensus       341 L~~L~Ls  347 (369)
                      |+.+.+.
T Consensus       335 L~~i~ip  341 (379)
T 4h09_A          335 LSTISYP  341 (379)
T ss_dssp             CCCCCCC
T ss_pred             CCEEEEC
Confidence            8888774

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.82  E-value=0.077  Score=46.29  Aligned_cols=33  Identities=6%  Similarity=0.156  Sum_probs=14.3

Q ss_pred             CCCCEEEeecCCCc-----ccCccccCCCCCcEEeccc
Q 017543          316 ANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLED  348 (369)
Q Consensus       316 ~~L~~L~Ls~n~l~-----~LP~~i~~L~~L~~L~Ls~  348 (369)
                      +.|+.|+|++|.|.     .|-+.+..-+.|++|+|++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence            34555555555443     1223333333455555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.53  E-value=0.47  Score=45.16  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=57.4

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccccCCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L  341 (369)
                      +.++.+|+.+++..+  +..++...  ++.+|+.+.|.. + +..+++  +.+|.+|+.++|..+ ++.+...+.+.++|
T Consensus       316 F~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~-~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L  390 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPL-S-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKF  390 (394)
T ss_dssp             TTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCT-T-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred             hcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECc-c-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCC
Confidence            457889999999764  77787655  799999999986 3 888886  899999999999754 55555567777777


Q ss_pred             cEE
Q 017543          342 LHL  344 (369)
Q Consensus       342 ~~L  344 (369)
                      +.+
T Consensus       391 ~~I  393 (394)
T 4fs7_A          391 KWI  393 (394)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            654

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=88.17  E-value=0.064  Score=42.30  Aligned_cols=58  Identities=9%  Similarity=-0.017  Sum_probs=41.0

Q ss_pred             CCeeecCCCccccCchHHHHHHHHhhCCcceEeccCcchhHHHHHHHHHcceeeEEeccCCccccccccccee
Q 017543          118 EGVPTAIPSEDTRDNFTSHLYSALSQKSIETFINRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVK  190 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~~~L~~aL~~~gi~~~~~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~  190 (369)
                      |.+||||..+|....|++.|    ...|+.        +.+   +.|+.+.+.||..+.+...+.||.+|+..
T Consensus         5 ~~lFISh~~~d~~~~L~~~l----~~~~f~--------~~~---~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            5 IRLYITEGEVEDYRVFLERL----EQSGLE--------WRP---ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             EEEEECCCCSHHHHHHHHHH----HHHCSC--------EEE---CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             EEEEEecccHhHHHHHHHHH----hCCCCe--------eec---CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            47999999999333333333    333332        111   66888999999999999999999999853

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.81  E-value=0.2  Score=43.64  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             cCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----ccCccccCCCCCcEEecccCC
Q 017543          293 EFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       293 ~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      +.|+.|+|++|+.++.     |-+ +..-+.|+.|+|++|.|.     .|-+.+..-+.|++|+|++|.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~  109 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF  109 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc
Confidence            3455555554323332     222 344467888999888886     455566677889999999988

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 8/115 (6%)

Query: 242 WRNALKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLS 301
               L E  + A  I   +P    +   N  +  N  +           +L+ L  L L 
Sbjct: 261 GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI-----SPISNLKNLTYLTLY 315

Query: 302 GCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCKSLKSLP 356
               +  +  +SS   ++ +F     + ++ S +  L  +  L     + +  L 
Sbjct: 316 FN-NISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQ-ISDLT 367

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 11/61 (18%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGT 326
             L  L  L   + K +  + +  +L  +  L      ++  L  +++   I ++ LN  
Sbjct: 326 SSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ 383

Query: 327 A 327
           A
Sbjct: 384 A 384

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 126 SEDTRDNFTSHLYSAL--SQKSIETFINRGD-----EISQSLVDAIEASAISLIIFSEGY 178
           SE       + +   L       +  +++ D      I  +++D+IE S  ++ + SE +
Sbjct: 13  SERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENF 72

Query: 179 ASSRWFFDKLVKIL-QCKRVYGQIVLPVFYGVDP 211
             S W   +L     +         + +      
Sbjct: 73  VKSEWCKYELDFSHFRLFDENNDAAILILLEPIE 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.32
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.25
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.23
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.17
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.17
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.16
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.06
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.04
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.04
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.96
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.94
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.79
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.77
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.76
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.73
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.57
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.42
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.25
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.95
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.89
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.29
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	96.9
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.99
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.6
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	91.98
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	88.53
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.48

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.5e-12  Score=104.87  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=89.7

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccC
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELP  332 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP  332 (369)
                      .+.++.++.   +..+.+|+.|++++| .+..+|+.+ .+++|++|++++ |.++.+|.++.+++|+.|++++|.|..+|
T Consensus         7 ~n~l~~l~~---l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           7 HKDLTVLCH---LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASD-NALENVDGVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             TSCCSSCCC---GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             CCCCCCCcc---cccCCCCCEEECCCC-ccCcchhhhhhhhccccccccc-ccccccCccccccccCeEECCCCccCCCC
Confidence            355566643   678999999999999 689999888 899999999999 77889988999999999999999999887


Q ss_pred             c--cccCCCCCcEEecccCCCCCcCC---ccc-cCCCCCCCC
Q 017543          333 S--SIECLYKLLHLDLEDCKSLKSLP---SGL-FLCRNKCRI  368 (369)
Q Consensus       333 ~--~i~~L~~L~~L~Ls~n~~l~~lP---~~i-~~L~~L~~L  368 (369)
                      .  .++.+++|++|++++|+ +..+|   ..+ ..+++|..|
T Consensus        82 ~~~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          82 AIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CchhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            4  68999999999999998 44333   333 346776654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=1.9e-12  Score=104.31  Aligned_cols=91  Identities=25%  Similarity=0.361  Sum_probs=80.4

Q ss_pred             eEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccCC
Q 017543          273 VVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       273 ~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      |+|+|++| .+..+|. + ++++|++|++++ |.++.+|+ ++.+++|+.|++++|.|+.+|. ++++++|++|++++|+
T Consensus         1 R~L~Ls~n-~l~~l~~-l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHK-DLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTS-CCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCC-CCCCCcc-cccCCCCCEEECCC-CccCcchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            57999999 6888875 7 899999999998 77899997 9999999999999999999974 9999999999999998


Q ss_pred             CCCcCC--ccccCCCCCCCC
Q 017543          351 SLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       351 ~l~~lP--~~i~~L~~L~~L  368 (369)
                       +..+|  ..+..+++|+.|
T Consensus        77 -i~~~~~~~~l~~~~~L~~L   95 (124)
T d1dcea3          77 -LQQSAAIQPLVSCPRLVLL   95 (124)
T ss_dssp             -CCSSSTTGGGGGCTTCCEE
T ss_pred             -cCCCCCchhhcCCCCCCEE
Confidence             77776  467788888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5e-12  Score=106.57  Aligned_cols=110  Identities=15%  Similarity=0.236  Sum_probs=80.3

Q ss_pred             hcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          253 ACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       253 ~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .++.+..++.  ....+++|+.|+|++| .+..++ .+ .+++|+.|++++ +.+..+|+  +..+++|+.|+|++|.|+
T Consensus        26 ~~n~I~~i~~--~~~~l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~-N~i~~l~~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          26 RGYKIPVIEN--LGATLDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNN-NRICRIGEGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             TTSCCCSCCC--GGGGTTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCS-SCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred             CCCCCCccCc--cccccccCCEEECCCC-CCCccC-CcccCcchhhhhccc-ccccCCCccccccccccccceecccccc
Confidence            3455666653  2456788888888888 577775 45 788888888887 55777775  467888888888888888


Q ss_pred             ccCc--cccCCCCCcEEecccCCCCCcCCc----cccCCCCCCCC
Q 017543          330 ELPS--SIECLYKLLHLDLEDCKSLKSLPS----GLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~----~i~~L~~L~~L  368 (369)
                      .++.  .+..+++|++|++++|+ +..+|.    .+..+++|+.|
T Consensus       101 ~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~L  144 (162)
T d1a9na_         101 ELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVL  144 (162)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEE
T ss_pred             ccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCee
Confidence            7764  56788888888888887 666764    36667777655

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=8.6e-13  Score=111.33  Aligned_cols=90  Identities=14%  Similarity=0.239  Sum_probs=77.7

Q ss_pred             CCeeecCCCccccCchH-HHHHHHHhhCCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccceee
Q 017543          118 EGVPTAIPSEDTRDNFT-SHLYSALSQKSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLVKI  191 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~-~~L~~aL~~~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv~i  191 (369)
                      |||||||+++|..  |+ ..|...|+++|+++|+     ..|+.+.+++.++|++|+..|+|+|++|..|.||..|+...
T Consensus        13 yDvFisys~~D~~--~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~~~E~~~a   90 (161)
T d1fyva_          13 FHAFISYSGHDSF--WVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWCHYELYFA   90 (161)
T ss_dssp             EEEEEECCGGGHH--HHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSHHHHHHTT
T ss_pred             eEEEEecChhHHH--HHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHHHHHHHHH
Confidence            4999999999943  66 5799999999999999     78999999999999999999999999999999999999766


Q ss_pred             EEee-eccCeEEeeeeecc
Q 017543          192 LQCK-RVYGQIVLPVFYGV  209 (369)
Q Consensus       192 ~~~~-~~~~l~vlPiFy~V  209 (369)
                      +... ......++||+++-
T Consensus        91 ~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          91 HHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             SCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHcCCCceeEEEEec
Confidence            5543 34456789998864

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=104.47  Aligned_cols=99  Identities=16%  Similarity=0.217  Sum_probs=85.7

Q ss_pred             cccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccc-cCCCCCcEE
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSI-ECLYKLLHL  344 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i-~~L~~L~~L  344 (369)
                      .+..+|+.|+|++| .+..+|... .+.+|++|+|++ |.+..++.+..|++|++|+|++|.|+.+|..+ ..+++|++|
T Consensus        15 ~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS-SCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCC-CCCccCccccccccCCEEECCC-CCCCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            45678999999999 699998766 799999999999 67888988999999999999999999998875 679999999


Q ss_pred             ecccCCCCCcCCc--cccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPS--GLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~--~i~~L~~L~~L  368 (369)
                      ++++|+ +..++.  .+..+++|++|
T Consensus        93 ~L~~N~-i~~~~~l~~l~~l~~L~~L  117 (162)
T d1a9na_          93 ILTNNS-LVELGDLDPLASLKSLTYL  117 (162)
T ss_dssp             ECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred             eecccc-ccccccccccccccccchh
Confidence            999998 777774  56777887765

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.17  E-value=5.4e-11  Score=102.45  Aligned_cols=95  Identities=23%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             ceeeEEeecCCCCCCC-cCccc--cccCccEEEccCCCCCCcCC-C-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcE
Q 017543          270 NTLVVLNLRDCKSLKS-LPAGI--HLEFLKELDLSGCSKLKRLP-D-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLH  343 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~-lP~~i--~L~~L~~L~Ls~~~~l~~lP-~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~  343 (369)
                      .+++.|+|++|. +.. ++...  .+++|+.|+|++ +.+..+| . +..+++|++|+|++|+|+.+|.. +.+|++|++
T Consensus        29 ~~l~~L~Ls~N~-i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCC-CcccccccccCCCceEeeeeccc-cccccccccccccccccceeeeccccccccCHHHHhCCCcccc
Confidence            455566666663 432 33322  466666666665 3333333 3 55566666666666666655443 455666666


Q ss_pred             EecccCCCCCcCCcc-ccCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSG-LFLCRNKCR  367 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~-i~~L~~L~~  367 (369)
                      |+|++|+ +..||.+ +..+++|++
T Consensus       107 L~L~~N~-l~~i~~~~f~~l~~L~~  130 (192)
T d1w8aa_         107 LNLYDNQ-ISCVMPGSFEHLNSLTS  130 (192)
T ss_dssp             EECCSSC-CCEECTTSSTTCTTCCE
T ss_pred             cccCCcc-ccccCHHHhcCCccccc
Confidence            6666655 4444433 344555544

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.8e-12  Score=105.85  Aligned_cols=90  Identities=14%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CCeeecCCCccccCchH-HHHHHHHhh--CCcceEe-----ccCcchhHHHHHHHHHcceeeEEeccCCcccccccccce
Q 017543          118 EGVPTAIPSEDTRDNFT-SHLYSALSQ--KSIETFI-----NRGDEISQSLVDAIEASAISLIIFSEGYASSRWFFDKLV  189 (369)
Q Consensus       118 ~dvFis~~~~d~r~~F~-~~L~~aL~~--~gi~~~~-----~~G~~i~~~l~~~ie~S~i~ivv~S~~y~~S~~cl~ELv  189 (369)
                      |||||||+++|  ..|| .+|...|++  .|+++|+     ..|+.+.+++.++|++|+..|+|+|++|..|.||..|+.
T Consensus         6 YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~~E~~   83 (149)
T d1fyxa_           6 YDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCKYELD   83 (149)
T ss_dssp             EEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSC
T ss_pred             EEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchHHHHH
Confidence            49999999999  3355 568889965  4899999     789999999999999999999999999999999999996


Q ss_pred             ee-EEeeeccCeEEeeeeecc
Q 017543          190 KI-LQCKRVYGQIVLPVFYGV  209 (369)
Q Consensus       190 ~i-~~~~~~~~l~vlPiFy~V  209 (369)
                      .. ....++.+..++||+++-
T Consensus        84 ~a~~~~~~~~~~~iIpV~l~~  104 (149)
T d1fyxa_          84 FSHFRLFDENNDAAILILLEP  104 (149)
T ss_dssp             CSCCTTCGGGTTCCEEEESSC
T ss_pred             HHHHHHHHcCCceEEEEEecc
Confidence            54 344455667889999864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.2e-10  Score=102.39  Aligned_cols=100  Identities=33%  Similarity=0.471  Sum_probs=58.8

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~  340 (369)
                      +..+++|+.|++++|. +..++...  .+.+|+.|++++ +.+..+|.  +..+++|+.|++++|+|+.+|.. ++.+++
T Consensus        96 ~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~  173 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN  173 (266)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred             cccccccccccccccc-cceeeccccccccccccccccc-cccceeccccccccccchhcccccccccccCccccccccc
Confidence            3445555555555552 33333333  455555555555 34555553  55666777777777777666544 566777


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|+|++|+ +..||.+++.+++|+.|
T Consensus       174 L~~L~Ls~N~-L~~lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         174 LDTLLLQENS-LYTIPKGFFGSHLLPFA  200 (266)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCCCSEE
T ss_pred             cceeecccCC-CcccChhHCCCCCCCEE
Confidence            7777777766 55777777666666544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.04  E-value=3.4e-11  Score=111.17  Aligned_cols=100  Identities=19%  Similarity=0.258  Sum_probs=73.5

Q ss_pred             ccccceeeEEeecC-CCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCc-ccCccccCCCCC
Q 017543          266 SQHLNTLVVLNLRD-CKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIE-ELPSSIECLYKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~-n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~-~LP~~i~~L~~L  341 (369)
                      ++++++|++|+|++ |...+.+|..+ +|++|++|+|++|...+..|. +..+.+|+.++++.|.+. .+|.++++|++|
T Consensus        72 l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L  151 (313)
T d1ogqa_          72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL  151 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred             HhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCccc
Confidence            67788888888876 43345788877 788888888887443333444 777788888888887655 677888888888


Q ss_pred             cEEecccCCCCCcCCccccCCCCC
Q 017543          342 LHLDLEDCKSLKSLPSGLFLCRNK  365 (369)
Q Consensus       342 ~~L~Ls~n~~l~~lP~~i~~L~~L  365 (369)
                      +++++++|.+.+.+|..+..+.++
T Consensus       152 ~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_         152 VGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTT
T ss_pred             ceeecccccccccccccccccccc
Confidence            888888888777888877776655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.04  E-value=7.4e-11  Score=108.86  Aligned_cols=99  Identities=19%  Similarity=0.328  Sum_probs=85.8

Q ss_pred             ceeeEEeecCCCCCC--CcCccc-cccCccEEEccCCCC-CCcCCC-CCCCCCCCEEEeecCCCccc-CccccCCCCCcE
Q 017543          270 NTLVVLNLRDCKSLK--SLPAGI-HLEFLKELDLSGCSK-LKRLPD-ISSAANIEEMFLNGTAIEEL-PSSIECLYKLLH  343 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~--~lP~~i-~L~~L~~L~Ls~~~~-l~~lP~-i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~L~~  343 (369)
                      ..++.|+|++|...+  .+|..+ +|++|++|+|++|+. .+.+|. |++|++|++|+|++|++..+ |..+..+.+|++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            468999999984333  589999 999999999997544 558997 99999999999999999965 555899999999


Q ss_pred             EecccCCCCCcCCccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++++|...+.+|..+..+++|+.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             cccccccccccCchhhccCccccee
Confidence            9999999999999999999988764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.7e-10  Score=102.89  Aligned_cols=98  Identities=28%  Similarity=0.296  Sum_probs=53.5

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSS-IECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~  343 (369)
                      +..+++|+.|+|++| .+..+|....+++|++|+|++ +.+..+|. +..+++|++|++++|.+..++.. +..+.+|++
T Consensus        51 f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~  128 (266)
T d1p9ag_          51 LMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE  128 (266)
T ss_dssp             GTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             hhccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccccccccceeecccccccccccc
Confidence            345566666666666 355555322566666666665 34555554 55666666666666666554433 355666666


Q ss_pred             EecccCCCCCcCCccc-cCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGL-FLCRNKC  366 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i-~~L~~L~  366 (369)
                      |++++|. +..+|..+ ..+++|+
T Consensus       129 L~l~~n~-l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_         129 LYLKGNE-LKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             EECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             ccccccc-cceeccccccccccch
Confidence            6666655 44454433 3344444

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.03  E-value=3.3e-10  Score=97.35  Aligned_cols=103  Identities=19%  Similarity=0.257  Sum_probs=82.1

Q ss_pred             hhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEe
Q 017543          248 EKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFL  323 (369)
Q Consensus       248 ~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~L  323 (369)
                      .+.+. .+.+........+..+++|+.|+|++|. +..++...  .+++|+.|+|++ |.+..+|.  +.+|++|++|+|
T Consensus        33 ~L~Ls-~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~-N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          33 ELLLN-DNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             EEECC-SCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEEC
T ss_pred             EEEeC-CCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeecc-ccccccCHHHHhCCCccccccc
Confidence            34333 3555543333446789999999999995 66665544  799999999999 67888885  899999999999


Q ss_pred             ecCCCcccCcc-ccCCCCCcEEecccCCCCC
Q 017543          324 NGTAIEELPSS-IECLYKLLHLDLEDCKSLK  353 (369)
Q Consensus       324 s~n~l~~LP~~-i~~L~~L~~L~Ls~n~~l~  353 (369)
                      ++|.|+.+|.. +..+++|++|+|++|+...
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCccccccCHHHhcCCccccccccccccccc
Confidence            99999999775 6899999999999998443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.1e-10  Score=94.65  Aligned_cols=85  Identities=19%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccccCCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKL  341 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L  341 (369)
                      +..+++|+.|++.+|+.+..++.. + .+++|+.|+|++ +.+..++.  +..+++|++|+|++|+|+++|..+....+|
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l  105 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSL  105 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccccccccceeccCCCCcccChhhhccccc
Confidence            567788888888877568888765 4 788999999988 56788864  788899999999999999998887666678


Q ss_pred             cEEecccCCC
Q 017543          342 LHLDLEDCKS  351 (369)
Q Consensus       342 ~~L~Ls~n~~  351 (369)
                      ++|+|++|++
T Consensus       106 ~~L~L~~Np~  115 (156)
T d2ifga3         106 QELVLSGNPL  115 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cccccCCCcc
Confidence            8999988874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.5e-10  Score=92.26  Aligned_cols=95  Identities=14%  Similarity=0.066  Sum_probs=76.2

Q ss_pred             eeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecc
Q 017543          272 LVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLE  347 (369)
Q Consensus       272 L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls  347 (369)
                      ...++.+++ .+..+|..+ .+++|+.|++.+++.++.+|.  +.+|++|+.|+|++|+|+.+|. .+..+++|++|+|+
T Consensus        10 ~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            445677776 567788888 888999999987677888884  8889999999999999998854 47889999999999


Q ss_pred             cCCCCCcCCccccCCCCCCCC
Q 017543          348 DCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       348 ~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|+ +..+|.+++...+|.+|
T Consensus        89 ~N~-l~~l~~~~~~~~~l~~L  108 (156)
T d2ifga3          89 FNA-LESLSWKTVQGLSLQEL  108 (156)
T ss_dssp             SSC-CSCCCSTTTCSCCCCEE
T ss_pred             CCC-CcccChhhhcccccccc
Confidence            888 77888887766566654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=9.5e-10  Score=94.95  Aligned_cols=97  Identities=19%  Similarity=0.318  Sum_probs=81.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..++.|+.|++++|. ...++. + .+++|+.|++++ +.+..+|.+..+++|++|++++|+++.+|. ++++++|++|
T Consensus       102 l~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~-n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L  177 (199)
T d2omxa2         102 LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSS-NTISDISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERL  177 (199)
T ss_dssp             GTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCS-SCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cccccccccccccccc-cccccc-cchhhhhHHhhhhh-hhhcccccccccccccccccccccccCCcc-ccCCCCCCEE
Confidence            5678899999999884 555543 5 899999999998 557777778899999999999999999874 8999999999


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +|++|+ +..+| .+..|++|+.|
T Consensus       178 ~ls~N~-i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         178 DISSNK-VSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             ECCCCC-CCCCc-cccCCCCCCcC
Confidence            999998 77786 58888888865

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=1.2e-09  Score=95.24  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=79.3

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      +..+++|+.|++++|. +..++.-..++.|+.+++++ +.+..++.+..+++|+.+++++|.++.++. +++|++|+.|+
T Consensus       108 l~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~-n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~  184 (210)
T d1h6ta2         108 LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGN-NKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY  184 (210)
T ss_dssp             GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCS-SCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred             cccccccccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccccccccc-ccCCCCCCEEE
Confidence            5667888888888883 55555322788888888887 456666667789999999999999998875 89999999999


Q ss_pred             cccCCCCCcCCccccCCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|+ +..+| .+.+|++|+.|
T Consensus       185 Ls~N~-i~~l~-~l~~l~~L~~L  205 (210)
T d1h6ta2         185 LSKNH-ISDLR-ALAGLKNLDVL  205 (210)
T ss_dssp             CCSSC-CCBCG-GGTTCTTCSEE
T ss_pred             CCCCC-CCCCh-hhcCCCCCCEE
Confidence            99998 77887 58889998876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.7e-09  Score=98.27  Aligned_cols=101  Identities=22%  Similarity=0.307  Sum_probs=62.3

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCccc-CccccCCCC
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEEL-PSSIECLYK  340 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~L-P~~i~~L~~  340 (369)
                      +..+.+|+.+++++| .++.+|...  .+.+|+.|+|++ +.+..+|.  +.++++|++|++++|.+..+ |..++.+++
T Consensus       125 ~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~  202 (284)
T d1ozna_         125 FRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR  202 (284)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             cchhcccchhhhccc-cccccChhHhccccchhhccccc-CcccccchhhhccccccchhhhhhccccccChhHhhhhhh
Confidence            345566677777776 466665443  566677777776 34555553  66677777777777766644 556677777


Q ss_pred             CcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |++|++++|++.+..|..+..+++|+.|
T Consensus       203 L~~L~l~~N~i~~~~~~~~~~~~~L~~L  230 (284)
T d1ozna_         203 LMTLYLFANNLSALPTEALAPLRALQYL  230 (284)
T ss_dssp             CCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred             cccccccccccccccccccccccccCEE
Confidence            7777777766433333455566666544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.85  E-value=3.3e-09  Score=97.04  Aligned_cols=88  Identities=19%  Similarity=0.270  Sum_probs=49.4

Q ss_pred             cceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          269 LNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       269 l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      +++|+.|++.+|......+..+ .++.+++|++++ +.+..++.  +.++++|++|+|++|+|+++|.++.++++|++|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~-n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~  248 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVY  248 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEE
T ss_pred             CCccCEEECCCCcCCCCChhHhhcccccccccccc-ccccccccccccccccceeeecccccccccccccccccCCCEEE
Confidence            4455666666654333334444 556666666665 34444442  5556666666666666666666666666666666


Q ss_pred             cccCCCCCcCCcc
Q 017543          346 LEDCKSLKSLPSG  358 (369)
Q Consensus       346 Ls~n~~l~~lP~~  358 (369)
                      |++|+ ++.|+..
T Consensus       249 Ls~N~-i~~i~~~  260 (305)
T d1xkua_         249 LHNNN-ISAIGSN  260 (305)
T ss_dssp             CCSSC-CCCCCTT
T ss_pred             CCCCc-cCccChh
Confidence            66655 5555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.82  E-value=1.3e-11  Score=107.38  Aligned_cols=117  Identities=19%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEee
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLN  324 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls  324 (369)
                      |+.+.+. .+.+..++ .  +..+++|+.|+|++| .+..+|... .+.+|+.|++++ +.+..++.+..+++|+.|+|+
T Consensus        50 L~~L~Ls-~n~I~~i~-~--l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~-N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          50 CKHLALS-TNNIEKIS-S--LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISY-NQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             CCEEECS-EEEESCCC-C--HHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSE-EECCCHHHHHHHHHSSEEEES
T ss_pred             cceeECc-ccCCCCcc-c--ccCCccccChhhccc-cccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            4444443 45566664 2  678999999999999 588898766 677899999998 567777778889999999999


Q ss_pred             cCCCcccCc--cccCCCCCcEEecccCCCCCcCCcc----------ccCCCCCCCC
Q 017543          325 GTAIEELPS--SIECLYKLLHLDLEDCKSLKSLPSG----------LFLCRNKCRI  368 (369)
Q Consensus       325 ~n~l~~LP~--~i~~L~~L~~L~Ls~n~~l~~lP~~----------i~~L~~L~~L  368 (369)
                      +|+|+.++.  .++.|++|++|+|++|++....+..          +..|++|+.|
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~L  179 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL  179 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEE
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEe
Confidence            999998874  6899999999999999843333322          5567777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=4.6e-09  Score=91.32  Aligned_cols=98  Identities=20%  Similarity=0.194  Sum_probs=73.6

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEe
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLD  345 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~  345 (369)
                      +..+++|+.|++++| .+..++..-.+++|++|++++ +.++.+|.++.+++|+.|++++|.+..++ .+.++++|+.++
T Consensus        64 l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~-n~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~  140 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDE-NKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLY  140 (210)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCS-SCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEE
T ss_pred             HhhCCCCCEEeCCCc-cccCccccccCcccccccccc-ccccccccccccccccccccccccccccc-cccccccccccc
Confidence            567888888888888 577777422788888888887 46777877888888888888888887765 477888888888


Q ss_pred             cccCCCCCcCCccccCCCCCCCC
Q 017543          346 LEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       346 Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      +++|. +..++ .+..+++|+.|
T Consensus       141 ~~~n~-l~~~~-~~~~l~~L~~l  161 (210)
T d1h6ta2         141 LGNNK-ITDIT-VLSRLTKLDTL  161 (210)
T ss_dssp             CCSSC-CCCCG-GGGGCTTCSEE
T ss_pred             ccccc-ccccc-ccccccccccc
Confidence            88877 44433 45566666654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.7e-09  Score=94.13  Aligned_cols=112  Identities=24%  Similarity=0.339  Sum_probs=91.3

Q ss_pred             cccccCCCCCCCccccceeeEEeecCCCCCCCcCccc--cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCc
Q 017543          254 CNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGI--HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       254 ~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i--~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~  329 (369)
                      .+.+..++. ..+..+++|+.|++++|. +..++...  .+.+|+.+++++ +.++.+|+  +..+++|+.|+|++|.|+
T Consensus        90 ~~~~~~l~~-~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          90 NAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             CTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccc-hhhcccccCCEEecCCcc-cccccccccchhcccchhhhcc-ccccccChhHhccccchhhcccccCccc
Confidence            344444443 236788999999999994 66666554  789999999998 67888875  889999999999999999


Q ss_pred             ccCc-cccCCCCCcEEecccCCCCCcCCccccCCCCCCCC
Q 017543          330 ELPS-SIECLYKLLHLDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       330 ~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      .+|. .+..+++|++|++++|++.+..|..|..+++|..|
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence            8865 56899999999999999777778999988888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=8.1e-09  Score=88.89  Aligned_cols=97  Identities=16%  Similarity=0.296  Sum_probs=69.0

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|++++| .+..+|. + .++.|+.|++++| ....++.+..+++|+.|++++|.+..+| .+..+++|+.|
T Consensus        80 l~~l~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L  155 (199)
T d2omxa2          80 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQL  155 (199)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred             ccCCccccccccccc-ccccccc-ccccccccccccccc-ccccccccchhhhhHHhhhhhhhhcccc-ccccccccccc
Confidence            456777777777777 4566653 4 6777777777763 3444555777888888888888887765 47788888888


Q ss_pred             ecccCCCCCcCCccccCCCCCCCC
Q 017543          345 DLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       345 ~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++.+|+ +..+|. +..+++|+.|
T Consensus       156 ~l~~n~-l~~l~~-l~~l~~L~~L  177 (199)
T d2omxa2         156 NFSSNQ-VTDLKP-LANLTTLERL  177 (199)
T ss_dssp             ECCSSC-CCCCGG-GTTCTTCCEE
T ss_pred             cccccc-ccCCcc-ccCCCCCCEE
Confidence            888887 556653 6777777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.77  E-value=5.4e-09  Score=97.78  Aligned_cols=93  Identities=18%  Similarity=0.304  Sum_probs=70.4

Q ss_pred             ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEeccc
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLED  348 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~  348 (369)
                      ..++.+.+..| .+..++ .+ .+.+++.|++++ +.+..++.+..+++|++|+|++|+|+.+| .+++|++|++|+|++
T Consensus       285 ~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~-n~l~~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~  360 (384)
T d2omza2         285 TALTNLELNEN-QLEDIS-PISNLKNLTYLTLYF-NNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGH  360 (384)
T ss_dssp             TTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCS-SCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCS
T ss_pred             ccccccccccc-cccccc-ccchhcccCeEECCC-CCCCCCcccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCC
Confidence            33444444444 233333 23 678899999998 56777877889999999999999999887 599999999999999


Q ss_pred             CCCCCcCCccccCCCCCCCC
Q 017543          349 CKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       349 n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+ +..+|. +.+|++|+.|
T Consensus       361 N~-l~~l~~-l~~l~~L~~L  378 (384)
T d2omza2         361 NQ-ISDLTP-LANLTRITQL  378 (384)
T ss_dssp             SC-CCBCGG-GTTCTTCSEE
T ss_pred             Cc-CCCChh-hccCCCCCEe
Confidence            98 566664 7888888765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.76  E-value=3.6e-11  Score=104.49  Aligned_cols=98  Identities=20%  Similarity=0.271  Sum_probs=83.6

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccCccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELPSSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~  343 (369)
                      +..+.+|+.|+|++| .+..++ .+ .+++|++|+|++ +.++.+|. ...+.+|+.|++++|.|+.++ .+.++++|++
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~-N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGR-NLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCE-EEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSE
T ss_pred             HhcccccceeECccc-CCCCcc-cccCCccccChhhcc-cccccccccccccccccccccccccccccc-cccccccccc
Confidence            566889999999999 588887 57 899999999998 56888987 556678999999999999885 4889999999


Q ss_pred             EecccCCCCCcCC--ccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLP--SGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP--~~i~~L~~L~~L  368 (369)
                      |+|++|+ +..+|  ..+..+++|+.|
T Consensus       120 L~L~~N~-i~~~~~~~~l~~l~~L~~L  145 (198)
T d1m9la_         120 LYMSNNK-ITNWGEIDKLAALDKLEDL  145 (198)
T ss_dssp             EEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred             cccccch-hccccccccccCCCcccee
Confidence            9999998 67776  357788888765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.74  E-value=1e-08  Score=93.66  Aligned_cols=100  Identities=23%  Similarity=0.302  Sum_probs=86.3

Q ss_pred             ccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCC-CCCCCCCCEEEeecCCCcccC-ccccCCCCCcE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPD-ISSAANIEEMFLNGTAIEELP-SSIECLYKLLH  343 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~-i~~L~~L~~L~Ls~n~l~~LP-~~i~~L~~L~~  343 (369)
                      +..+++|+.+++.+| .+..+|..+ +++|+.|++++|......|. +.++++++.|++++|.+..+| ..+.++++|++
T Consensus       146 ~~~l~~L~~l~l~~n-~l~~l~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~  223 (305)
T d1xkua_         146 FQGMKKLSYIRIADT-NITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE  223 (305)
T ss_dssp             GGGCTTCCEEECCSS-CCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCE
T ss_pred             cccccccCccccccC-CccccCccc-CCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccccccee
Confidence            556788999999999 578888664 67899999999766666665 899999999999999999885 55789999999


Q ss_pred             EecccCCCCCcCCccccCCCCCCCC
Q 017543          344 LDLEDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       344 L~Ls~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      |+|++|+ +..||.++..+++|+.|
T Consensus       224 L~L~~N~-L~~lp~~l~~l~~L~~L  247 (305)
T d1xkua_         224 LHLNNNK-LVKVPGGLADHKYIQVV  247 (305)
T ss_dssp             EECCSSC-CSSCCTTTTTCSSCCEE
T ss_pred             eeccccc-ccccccccccccCCCEE
Confidence            9999998 88999999999999876

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=1.2e-08  Score=89.37  Aligned_cols=97  Identities=15%  Similarity=0.264  Sum_probs=74.5

Q ss_pred             cccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEec
Q 017543          267 QHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDL  346 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~L  346 (369)
                      .....+..+.+.++ .+...+....+++|+.|++++ +.+..++.++++++|++|+|++|+++.+|. ++++++|++|+|
T Consensus       126 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         126 AGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGN-AQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHL  202 (227)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCS-SCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred             ccccchhhhhchhh-hhchhhhhccccccccccccc-cccccchhhcccccceecccCCCccCCChh-hcCCCCCCEEEC
Confidence            34566777777776 344444322788899999988 456666668889999999999999998875 889999999999


Q ss_pred             ccCCCCCcCCccccCCCCCCCC
Q 017543          347 EDCKSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       347 s~n~~l~~lP~~i~~L~~L~~L  368 (369)
                      ++|+ +..+|. +.++++|+.|
T Consensus       203 s~N~-lt~i~~-l~~l~~L~~L  222 (227)
T d1h6ua2         203 KNNQ-ISDVSP-LANTSNLFIV  222 (227)
T ss_dssp             TTSC-CCBCGG-GTTCTTCCEE
T ss_pred             cCCc-CCCCcc-cccCCCCCEE
Confidence            9997 777874 7777887765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.62  E-value=1.6e-08  Score=94.50  Aligned_cols=80  Identities=20%  Similarity=0.302  Sum_probs=71.7

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+.+++.|++++| .+..+++ + .+++|++|+|++| .++.+|.+++|++|++|+|++|+|+.+|+ +++|++|+.|
T Consensus       303 ~~~~~~l~~L~ls~n-~l~~l~~-l~~l~~L~~L~L~~n-~l~~l~~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L  378 (384)
T d2omza2         303 ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFANN-KVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQL  378 (384)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEE
T ss_pred             cchhcccCeEECCCC-CCCCCcc-cccCCCCCEEECCCC-CCCCChhHcCCCCCCEEECCCCcCCCChh-hccCCCCCEe
Confidence            566789999999999 5888874 6 8999999999995 78888889999999999999999999986 9999999999


Q ss_pred             ecccC
Q 017543          345 DLEDC  349 (369)
Q Consensus       345 ~Ls~n  349 (369)
                      +|++|
T Consensus       379 ~L~~N  383 (384)
T d2omza2         379 GLNDQ  383 (384)
T ss_dssp             ECCCE
T ss_pred             eCCCC
Confidence            99986

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.57  E-value=2.8e-08  Score=86.98  Aligned_cols=79  Identities=19%  Similarity=0.330  Sum_probs=69.2

Q ss_pred             ccccceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEE
Q 017543          266 SQHLNTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHL  344 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L  344 (369)
                      +..+++|+.|++++| .+...+. + ++++|+.|+|++| .++.+|++++|++|++|+|++|+|+.+|. ++++++|++|
T Consensus       147 ~~~~~~L~~L~l~~n-~~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L  222 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIV  222 (227)
T ss_dssp             GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEE
T ss_pred             hcccccccccccccc-ccccchh-hcccccceecccCCC-ccCCChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEE
Confidence            456788999999999 4665554 6 8999999999995 78889889999999999999999999985 9999999999


Q ss_pred             eccc
Q 017543          345 DLED  348 (369)
Q Consensus       345 ~Ls~  348 (369)
                      +|++
T Consensus       223 ~lsn  226 (227)
T d1h6ua2         223 TLTN  226 (227)
T ss_dssp             EEEE
T ss_pred             EeeC
Confidence            9974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.43  E-value=2.5e-07  Score=84.73  Aligned_cols=104  Identities=24%  Similarity=0.232  Sum_probs=78.2

Q ss_pred             hhhhhhhhcccccCCCCCCCccccceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeec
Q 017543          246 LKEKIISACNIFTKTPNPSFSQHLNTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNG  325 (369)
Q Consensus       246 L~~L~ll~~~~l~~~p~~~~~~~l~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~  325 (369)
                      ++.+.... +.++.+|.     .+++|+.|+|++| .++.+|..  +.+|+.|++++ +.+..++++.  ++|++|+|++
T Consensus        40 l~~LdLs~-~~L~~lp~-----~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~l~~-n~l~~l~~lp--~~L~~L~L~~  107 (353)
T d1jl5a_          40 AHELELNN-LGLSSLPE-----LPPHLESLVASCN-SLTELPEL--PQSLKSLLVDN-NNLKALSDLP--PLLEYLGVSN  107 (353)
T ss_dssp             CSEEECTT-SCCSCCCS-----CCTTCSEEECCSS-CCSSCCCC--CTTCCEEECCS-SCCSCCCSCC--TTCCEEECCS
T ss_pred             CCEEEeCC-CCCCCCCC-----CCCCCCEEECCCC-CCcccccc--hhhhhhhhhhh-cccchhhhhc--cccccccccc
Confidence            34444333 44667764     2467899999998 68899875  46788999998 5677777643  4699999999


Q ss_pred             CCCcccCccccCCCCCcEEecccCCCCCcCCccccCCC
Q 017543          326 TAIEELPSSIECLYKLLHLDLEDCKSLKSLPSGLFLCR  363 (369)
Q Consensus       326 n~l~~LP~~i~~L~~L~~L~Ls~n~~l~~lP~~i~~L~  363 (369)
                      |.|+.+|. ++++++|++|++++|. +...|..+..+.
T Consensus       108 n~l~~lp~-~~~l~~L~~L~l~~~~-~~~~~~~~~~l~  143 (353)
T d1jl5a_         108 NQLEKLPE-LQNSSFLKIIDVDNNS-LKKLPDLPPSLE  143 (353)
T ss_dssp             SCCSSCCC-CTTCTTCCEEECCSSC-CSCCCCCCTTCC
T ss_pred             cccccccc-hhhhccceeecccccc-cccccccccccc
Confidence            99999996 7899999999999887 666666554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.42  E-value=3.5e-07  Score=83.65  Aligned_cols=88  Identities=23%  Similarity=0.282  Sum_probs=65.2

Q ss_pred             ceeeEEeecCCCCCCCcCccccccCccEEEccCCCCCCcCCCCCCCCCCCEEEeecCCCcccCccccCCCCCcEEecccC
Q 017543          270 NTLVVLNLRDCKSLKSLPAGIHLEFLKELDLSGCSKLKRLPDISSAANIEEMFLNGTAIEELPSSIECLYKLLHLDLEDC  349 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i~L~~L~~L~Ls~~~~l~~lP~i~~L~~L~~L~Ls~n~l~~LP~~i~~L~~L~~L~Ls~n  349 (369)
                      .+|+.|+|++| .++.+|+.  +++|++|+|++ +.++.+|+.  +.+|+.|++++|.++.++.-   .+.|++|++++|
T Consensus        38 ~~l~~LdLs~~-~L~~lp~~--~~~L~~L~Ls~-N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNL-GLSSLPEL--PPHLESLVASC-NSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTS-CCSCCCSC--CTTCSEEECCS-SCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS
T ss_pred             cCCCEEEeCCC-CCCCCCCC--CCCCCEEECCC-CCCcccccc--hhhhhhhhhhhcccchhhhh---cccccccccccc
Confidence            35778888888 57888864  46788889986 678888862  34688888888888877641   245888999888


Q ss_pred             CCCCcCCccccCCCCCCCC
Q 017543          350 KSLKSLPSGLFLCRNKCRI  368 (369)
Q Consensus       350 ~~l~~lP~~i~~L~~L~~L  368 (369)
                      . +..+|. ++.+++|++|
T Consensus       109 ~-l~~lp~-~~~l~~L~~L  125 (353)
T d1jl5a_         109 Q-LEKLPE-LQNSSFLKII  125 (353)
T ss_dssp             C-CSSCCC-CTTCTTCCEE
T ss_pred             c-cccccc-hhhhccceee
Confidence            7 778885 5677777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6.9e-07  Score=78.17  Aligned_cols=83  Identities=30%  Similarity=0.345  Sum_probs=57.5

Q ss_pred             ceeeEEeecCCCCCCCcCccc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCcc-ccCCCCCcEEe
Q 017543          270 NTLVVLNLRDCKSLKSLPAGI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPSS-IECLYKLLHLD  345 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~~-i~~L~~L~~L~  345 (369)
                      ..+..|++.+| .+..++... ...+++.+....++.++.+|.  +.++++|++|+|++|+|+.+|.. +.+|++|++|+
T Consensus       153 ~~l~~L~l~~n-~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~  231 (242)
T d1xwdc1         153 FESVILWLNKN-GIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARS  231 (242)
T ss_dssp             SSCEEEECCSS-CCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSS
T ss_pred             ccceeeecccc-cccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCc
Confidence            46777788777 477777766 666666665555577778875  67788888888888888888764 56666666666


Q ss_pred             cccCCCCCcCC
Q 017543          346 LEDCKSLKSLP  356 (369)
Q Consensus       346 Ls~n~~l~~lP  356 (369)
                      +.+   +..+|
T Consensus       232 ~~~---l~~lp  239 (242)
T d1xwdc1         232 TYN---LKKLP  239 (242)
T ss_dssp             EES---SSCSC
T ss_pred             CCC---CCcCC
Confidence            644   33455

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.2e-06  Score=76.50  Aligned_cols=85  Identities=16%  Similarity=0.264  Sum_probs=56.8

Q ss_pred             ceeeEEeecCCCCCCCcCcc-c-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeec-CCCcccC-ccccCCCCCcE
Q 017543          270 NTLVVLNLRDCKSLKSLPAG-I-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNG-TAIEELP-SSIECLYKLLH  343 (369)
Q Consensus       270 ~~L~~L~L~~n~~l~~lP~~-i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~-n~l~~LP-~~i~~L~~L~~  343 (369)
                      .+++.|++++| .+..+|.. + ++++|++|+|++|.....+|.  +.+++++++|.+.. |.+..++ ..+.++++|++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccc
Confidence            46777777777 47777764 4 677788888877555555553  66777777777654 4666444 44677777888


Q ss_pred             EecccCCCCCcCC
Q 017543          344 LDLEDCKSLKSLP  356 (369)
Q Consensus       344 L~Ls~n~~l~~lP  356 (369)
                      |++++|. +..+|
T Consensus       108 l~l~~~~-l~~~~  119 (242)
T d1xwdc1         108 LLISNTG-IKHLP  119 (242)
T ss_dssp             EEEESCC-CCSCC
T ss_pred             cccchhh-hcccc
Confidence            8777776 44444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=2.9e-07  Score=76.48  Aligned_cols=77  Identities=22%  Similarity=0.204  Sum_probs=54.4

Q ss_pred             cccCccEEEccCCCCCCcCCC----CCCCCCCCEEEeecCCCcccCc-cccCCCCCcEEecccCCCCCcCCcc-------
Q 017543          291 HLEFLKELDLSGCSKLKRLPD----ISSAANIEEMFLNGTAIEELPS-SIECLYKLLHLDLEDCKSLKSLPSG-------  358 (369)
Q Consensus       291 ~L~~L~~L~Ls~~~~l~~lP~----i~~L~~L~~L~Ls~n~l~~LP~-~i~~L~~L~~L~Ls~n~~l~~lP~~-------  358 (369)
                      .+++|++|+|++ |.++.++.    +..|++|+.|+|++|.|+.+++ ......+|+.|++++|++.......       
T Consensus        63 ~~~~L~~L~Ls~-N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          63 NIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HCTTCCCCCCCS-SCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             hCCCCCEeeCCC-ccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            688899999998 55666653    5578899999999999988876 2233446888999998854444322       


Q ss_pred             ccCCCCCCCC
Q 017543          359 LFLCRNKCRI  368 (369)
Q Consensus       359 i~~L~~L~~L  368 (369)
                      +..+++|+.|
T Consensus       142 ~~~~P~L~~L  151 (162)
T d1koha1         142 RERFPKLLRL  151 (162)
T ss_dssp             HTTSTTCCEE
T ss_pred             HHHCCCCCEE
Confidence            4456777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2e-07  Score=84.48  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=47.9

Q ss_pred             ceeeEEeecCCC-CCC--CcCccc-cccCccEEEccCCCCCCc-CC-CCCCCCCCCEEEeecC-CCc-ccCccccCCCCC
Q 017543          270 NTLVVLNLRDCK-SLK--SLPAGI-HLEFLKELDLSGCSKLKR-LP-DISSAANIEEMFLNGT-AIE-ELPSSIECLYKL  341 (369)
Q Consensus       270 ~~L~~L~L~~n~-~l~--~lP~~i-~L~~L~~L~Ls~~~~l~~-lP-~i~~L~~L~~L~Ls~n-~l~-~LP~~i~~L~~L  341 (369)
                      ++|+.|+++++. .+.  .+..-. ++++|+.|+|++|..++. .+ .++++++|++|+|++| .|+ .-...++++++|
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L  227 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL  227 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCC
Confidence            456667776652 121  122222 467777777777666542 22 3667777777777775 555 334456677777


Q ss_pred             cEEecccC
Q 017543          342 LHLDLEDC  349 (369)
Q Consensus       342 ~~L~Ls~n  349 (369)
                      ++|++++|
T Consensus       228 ~~L~l~~~  235 (284)
T d2astb2         228 KTLQVFGI  235 (284)
T ss_dssp             CEEECTTS
T ss_pred             CEEeeeCC
Confidence            77777776

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=8e-06  Score=67.42  Aligned_cols=76  Identities=32%  Similarity=0.415  Sum_probs=59.4

Q ss_pred             ccceeeEEeecCCCCCCCcCc---cc-cccCccEEEccCCCCCCcCCC--CCCCCCCCEEEeecCCCcccCc--------
Q 017543          268 HLNTLVVLNLRDCKSLKSLPA---GI-HLEFLKELDLSGCSKLKRLPD--ISSAANIEEMFLNGTAIEELPS--------  333 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~lP~---~i-~L~~L~~L~Ls~~~~l~~lP~--i~~L~~L~~L~Ls~n~l~~LP~--------  333 (369)
                      .+++|++|+|++| .+..++.   .+ .+++|+.|+|++ |.+..+++  .....+|+.|+|++|.+.....        
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-CccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            4677999999999 5777653   34 799999999999 77888886  2234579999999999975432        


Q ss_pred             cccCCCCCcEEe
Q 017543          334 SIECLYKLLHLD  345 (369)
Q Consensus       334 ~i~~L~~L~~L~  345 (369)
                      -+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            246789999986

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.4e-05  Score=71.84  Aligned_cols=91  Identities=20%  Similarity=0.235  Sum_probs=59.1

Q ss_pred             cccceeeEEeecCCCCCC-CcCccc-cccCccEEEccCCCCCCcCC--CCCCCCCCCEEEeecCCCc--ccCccccCCCC
Q 017543          267 QHLNTLVVLNLRDCKSLK-SLPAGI-HLEFLKELDLSGCSKLKRLP--DISSAANIEEMFLNGTAIE--ELPSSIECLYK  340 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~-~lP~~i-~L~~L~~L~Ls~~~~l~~lP--~i~~L~~L~~L~Ls~n~l~--~LP~~i~~L~~  340 (369)
                      ..+++|+.|++++|..++ ..+..+ ++++|++|+|++|+.+..-.  .++++++|+.|+++++ +.  .++.-...+++
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~  250 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPH  250 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTT
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcc
Confidence            457889999999886555 344555 88999999999987775422  3788899999999887 22  33332344555


Q ss_pred             CcEEecccCCCCCcCCccccC
Q 017543          341 LLHLDLEDCKSLKSLPSGLFL  361 (369)
Q Consensus       341 L~~L~Ls~n~~l~~lP~~i~~  361 (369)
                      |+   +..+++....|..++.
T Consensus       251 L~---i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         251 LQ---INCSHFTTIARPTIGN  268 (284)
T ss_dssp             SE---ESCCCSCCTTCSSCSS
T ss_pred             cc---ccCccCCCCCCCccCc
Confidence            55   3444433333444443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=1.6e-05  Score=74.66  Aligned_cols=83  Identities=24%  Similarity=0.362  Sum_probs=61.0

Q ss_pred             ccccceeeEEeecCCCCCC-----CcCccc-cccCccEEEccCCCCCCc-----CCC-CC-CCCCCCEEEeecCCCcc--
Q 017543          266 SQHLNTLVVLNLRDCKSLK-----SLPAGI-HLEFLKELDLSGCSKLKR-----LPD-IS-SAANIEEMFLNGTAIEE--  330 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~-----~lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~-~L~~L~~L~Ls~n~l~~--  330 (369)
                      ++.++++++|+|++|. +.     .+...+ .+++|+.|+|++| .++.     +.+ +. ...+|+.|+|++|.|+.  
T Consensus        23 ~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~  100 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAG  100 (460)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGG
T ss_pred             HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCCccccc
Confidence            4567888999999994 54     344555 7889999999984 4542     222 22 34579999999998863  


Q ss_pred             ---cCccccCCCCCcEEecccCC
Q 017543          331 ---LPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       331 ---LP~~i~~L~~L~~L~Ls~n~  350 (369)
                         ++..+..+++|++|+|++|.
T Consensus       101 ~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         101 CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cccccchhhcccccccccccccc
Confidence               56677888999999999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00011  Score=68.64  Aligned_cols=61  Identities=23%  Similarity=0.391  Sum_probs=36.9

Q ss_pred             cccceeeEEeecCCCCCCC-----cCccc--cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc
Q 017543          267 QHLNTLVVLNLRDCKSLKS-----LPAGI--HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE  329 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~-----lP~~i--~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~  329 (369)
                      ..+++|+.|+|++| .++.     +...+  ...+|+.|+|++|. ++.     ++. +..+++|++|+|++|.|.
T Consensus        52 ~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          52 RVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             hcCCCCCEEECcCC-cCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccch
Confidence            44567777777777 3432     22222  22467777777753 433     344 667777777777777765

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.99  E-value=0.00084  Score=61.07  Aligned_cols=83  Identities=29%  Similarity=0.392  Sum_probs=58.7

Q ss_pred             ccccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCcCC-----C-CC--CCCCCCEEEeecCCCc--
Q 017543          266 SQHLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKRLP-----D-IS--SAANIEEMFLNGTAIE--  329 (369)
Q Consensus       266 ~~~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~lP-----~-i~--~L~~L~~L~Ls~n~l~--  329 (369)
                      +..+++|+.|+|++|. ++.     +...+ ..++|++|+|++|. ++.-.     + +.  ....|+.|+|++|.|.  
T Consensus       211 l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~  288 (344)
T d2ca6a1         211 LAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  288 (344)
T ss_dssp             GGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             hcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCcCChH
Confidence            4567788999999884 432     44455 67889999999864 43311     1 22  3467999999999886  


Q ss_pred             ---ccCccc-cCCCCCcEEecccCC
Q 017543          330 ---ELPSSI-ECLYKLLHLDLEDCK  350 (369)
Q Consensus       330 ---~LP~~i-~~L~~L~~L~Ls~n~  350 (369)
                         .|...+ .++++|++|+|++|.
T Consensus       289 ~~~~l~~~l~~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         289 AVRTLKTVIDEKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             HHHHHHHHHHccCCCCCEEECCCCc
Confidence               355666 367889999999988

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.60  E-value=0.002  Score=52.64  Aligned_cols=35  Identities=6%  Similarity=0.126  Sum_probs=15.3

Q ss_pred             CCCCCEEEeecCCCcc-----cCccccCCCCCcEEecccC
Q 017543          315 AANIEEMFLNGTAIEE-----LPSSIECLYKLLHLDLEDC  349 (369)
Q Consensus       315 L~~L~~L~Ls~n~l~~-----LP~~i~~L~~L~~L~Ls~n  349 (369)
                      .+.|+.|+|++|.|..     |-..+..-++|++|+|++|
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3445555555554431     2222333444555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.26  E-value=0.0033  Score=56.91  Aligned_cols=82  Identities=22%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             cccceeeEEeecCCCCCCC------cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCcc---
Q 017543          267 QHLNTLVVLNLRDCKSLKS------LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIEE---  330 (369)
Q Consensus       267 ~~l~~L~~L~L~~n~~l~~------lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~~---  330 (369)
                      .....|+.|+|++| .+..      +...+ .+++|+.|+|++|. ++.     +.. +..+++|++|+|++|.|..   
T Consensus       183 ~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~  260 (344)
T d2ca6a1         183 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGA  260 (344)
T ss_dssp             HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred             hhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCccCchhh
Confidence            34678999999998 4543      33344 68899999999854 432     333 6788999999999999863   


Q ss_pred             --cCccccC--CCCCcEEecccCC
Q 017543          331 --LPSSIEC--LYKLLHLDLEDCK  350 (369)
Q Consensus       331 --LP~~i~~--L~~L~~L~Ls~n~  350 (369)
                        +-..+..  -..|++|+|++|+
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             HHHHHHhhhccCCCCCEEECCCCc
Confidence              3333433  3579999999998

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.98  E-value=0.028  Score=45.30  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=38.6

Q ss_pred             cCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----ccCccccCCCCCcEEecccCC
Q 017543          293 EFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----ELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       293 ~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      ++|+.|+|++++.++.     +-. +...++|+.|+|++|.+.     .+-..+...+.|++|+|++|.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh
Confidence            4566666665333322     111 455677888888888775     344456677899999999998

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=88.53  E-value=0.06  Score=42.98  Aligned_cols=82  Identities=13%  Similarity=0.141  Sum_probs=43.5

Q ss_pred             ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc----CCC-CCCCCCCCEEEee--cCCCc-----
Q 017543          268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR----LPD-ISSAANIEEMFLN--GTAIE-----  329 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~----lP~-i~~L~~L~~L~Ls--~n~l~-----  329 (369)
                      ..++|+.|++++| .++.     +-..+ ...+|+.|++++|..-..    +-. +...++|+.++|+  +|.+.     
T Consensus        44 ~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          44 TNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             TCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             cCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHH
Confidence            4456777777776 3432     22222 456677777776432211    112 4555666665443  44553     


Q ss_pred             ccCccccCCCCCcEEecccCC
Q 017543          330 ELPSSIECLYKLLHLDLEDCK  350 (369)
Q Consensus       330 ~LP~~i~~L~~L~~L~Ls~n~  350 (369)
                      .|-..+.+.++|+.|++..+.
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeCcCCC
Confidence            355555666677777776543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.48  E-value=0.12  Score=41.09  Aligned_cols=99  Identities=12%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             ccceeeEEeecCCCCCCC-----cCccc-cccCccEEEccCCCCCCc-----CCC-CCCCCCCCEEEeecCCCc-----c
Q 017543          268 HLNTLVVLNLRDCKSLKS-----LPAGI-HLEFLKELDLSGCSKLKR-----LPD-ISSAANIEEMFLNGTAIE-----E  330 (369)
Q Consensus       268 ~l~~L~~L~L~~n~~l~~-----lP~~i-~L~~L~~L~Ls~~~~l~~-----lP~-i~~L~~L~~L~Ls~n~l~-----~  330 (369)
                      +.+.|+.|+|+++..++.     +-..+ ..++|+.|+|++| .++.     +-+ +....+|+.|++++|.+.     .
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            346788999987544432     22334 5788999999996 4432     112 456789999999999875     3


Q ss_pred             cCccccCCCCCcEEecc--cCCCCCc-----CCccccCCCCCCCC
Q 017543          331 LPSSIECLYKLLHLDLE--DCKSLKS-----LPSGLFLCRNKCRI  368 (369)
Q Consensus       331 LP~~i~~L~~L~~L~Ls--~n~~l~~-----lP~~i~~L~~L~~L  368 (369)
                      +-..+...++|+.++|.  +|+ ++.     |-..+...++|.+|
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~-i~~~~~~~La~~L~~n~~L~~L  137 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKF  137 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEE
T ss_pred             HHHHHHhCccccEEeeccCCCc-CcHHHHHHHHHHHHhCCCcCEE
Confidence            55677888999987665  444 322     33334455555543