Citrus Sinensis ID: 017563


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
MAVKFGSSSVSCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFPPTATSIQ
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEEEHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
ccEEEccccEEEEHcccccccEEccccccEcccccccccccccHHcccccccccEEEEcccccccccccccccEcccccccccccccccccccccccccccccccccccccEEEccccccccEEEEccccccEEEEEEccccccccccEEEEEcHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
mavkfgssSVSCVAnslsspllsrlssmmtlsqrpydrqgydilqlqnskvnpchlvygplklqggfqKRQSVLLAISedqseyveinpnapeqlsqhsnlqdisssgspsiqyegsngkpglisfynrpykredeiristvqnSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSirpyfatddnralhpqlGQRISSVAALVLSLIIPMVtmglvwpwtgpaasatlaPYLVGIVVQFAFEQYAryrkspswpvipIIFQVYRLHQLNRAAQLVTALSFTVrgaeatshnLAINNSLGALLNVLQLLGVICIWSLSSflmryfpptatsiq
mavkfgsssvsCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQyegsngkpgliSFYNRPYKREDEIRistvqnsrsSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFPPTATSIQ
MAVKFGsssvscvanslsspllsrlssmmtlsQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSlgallnvlqllgvICIWSLSSFLMRYFPPTATSIQ
*************************************RQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAI*********************************************LISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFP*******
*********V***********************************LQNSKVNPCHLVYGPLKLQGGFQKRQSV*************************************************************************SSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRM***************LHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFPP******
***************SLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQ*********************GSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFPPTATSIQ
*AV*FGSSSVSCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYV*INP********************PSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFP*******
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MAVKFGSSSVSCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRYFPPTATSIQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
255540607367 conserved hypothetical protein [Ricinus 0.991 0.997 0.659 1e-134
224119486329 predicted protein [Populus trichocarpa] 0.864 0.969 0.727 1e-133
297733750356 unnamed protein product [Vitis vinifera] 0.953 0.988 0.669 1e-130
225456967319 PREDICTED: uncharacterized protein LOC10 0.861 0.996 0.711 1e-127
357461911330 hypothetical protein MTR_3g077500 [Medic 0.834 0.933 0.707 1e-122
357461909377 hypothetical protein MTR_3g077500 [Medic 0.834 0.816 0.707 1e-122
388517087376 unknown [Medicago truncatula] 0.834 0.819 0.704 1e-122
356508691372 PREDICTED: uncharacterized protein LOC10 0.991 0.983 0.616 1e-121
449477656366 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.986 0.994 0.622 1e-120
359807649371 uncharacterized protein LOC100803499 [Gl 0.981 0.975 0.622 1e-120
>gi|255540607|ref|XP_002511368.1| conserved hypothetical protein [Ricinus communis] gi|223550483|gb|EEF51970.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/367 (65%), Positives = 291/367 (79%), Gaps = 1/367 (0%)

Query: 1   MAVKFGSSSVSCVANSLSSPLLSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGP 60
           MA K   SSVSCVA SLSSP   + SS ++LS+RPY    YD  +L+N+KVN C+ + G 
Sbjct: 1   MATKLSLSSVSCVATSLSSPRKPKRSSQLSLSERPYVELHYDAQKLRNAKVNSCYFIGGL 60

Query: 61  LKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSNLQDISSSGSPSIQYEGSNGK 120
           LKL      RQ V  A S+DQ++  E+  +  E    +S  ++++ + S     +G++GK
Sbjct: 61  LKLNRN-PTRQYVSHAASQDQAQDSELQSDELEPEDHNSTAENLAPTSSFFNHLQGTDGK 119

Query: 121 PGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVASFIFPSLYLRKIISMVFEDS 180
           PGL+SFYNRPYK ED++  + VQ ++SS++W  GP+VLVASFIFPSLYLR+I+S VFEDS
Sbjct: 120 PGLVSFYNRPYKMEDDVSKTNVQKNQSSLLWFAGPSVLVASFIFPSLYLRRILSTVFEDS 179

Query: 181 LLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATDDNRALHPQLGQRISSVAALV 240
           LLTDFLILFFTEALFY GVAVFLLLID++RR +    A +    L PQLGQRISSVAALV
Sbjct: 180 LLTDFLILFFTEALFYSGVAVFLLLIDQLRRPMEAESAANGGTNLAPQLGQRISSVAALV 239

Query: 241 LSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQYARYRKSPSWPVIPIIFQVY 300
           LSLIIP+VTMG VWPWTGPAASATLAPYLVGIVVQFAFEQYA+YRKSP+WP+IPIIFQVY
Sbjct: 240 LSLIIPLVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQYAKYRKSPAWPIIPIIFQVY 299

Query: 301 RLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSLGALLNVLQLLGVICIWSLSSFLMRY 360
           RLHQLNRAAQLVTALSFTV+GAE TSHNL I++SLG LLNVLQ LGVICIWSLSSFLM++
Sbjct: 300 RLHQLNRAAQLVTALSFTVKGAEMTSHNLEISSSLGTLLNVLQFLGVICIWSLSSFLMKF 359

Query: 361 FPPTATS 367
           FP  A++
Sbjct: 360 FPSAAST 366




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119486|ref|XP_002318085.1| predicted protein [Populus trichocarpa] gi|222858758|gb|EEE96305.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297733750|emb|CBI14997.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225456967|ref|XP_002278631.1| PREDICTED: uncharacterized protein LOC100251871 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357461911|ref|XP_003601237.1| hypothetical protein MTR_3g077500 [Medicago truncatula] gi|355490285|gb|AES71488.1| hypothetical protein MTR_3g077500 [Medicago truncatula] Back     alignment and taxonomy information
>gi|357461909|ref|XP_003601236.1| hypothetical protein MTR_3g077500 [Medicago truncatula] gi|355490284|gb|AES71487.1| hypothetical protein MTR_3g077500 [Medicago truncatula] Back     alignment and taxonomy information
>gi|388517087|gb|AFK46605.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508691|ref|XP_003523088.1| PREDICTED: uncharacterized protein LOC100796720 [Glycine max] Back     alignment and taxonomy information
>gi|449477656|ref|XP_004155083.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101208061 [Cucumis sativus] Back     alignment and taxonomy information
>gi|359807649|ref|NP_001241168.1| uncharacterized protein LOC100803499 [Glycine max] gi|255634981|gb|ACU17849.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query369
TAIR|locus:2166330366 AT5G63040 "AT5G63040" [Arabido 0.869 0.877 0.589 2.8e-89
TAIR|locus:2198070340 AT1G48460 "AT1G48460" [Arabido 0.653 0.708 0.322 2e-33
TAIR|locus:2103326404 AT3G60590 [Arabidopsis thalian 0.466 0.425 0.279 4.3e-11
TAIR|locus:2166330 AT5G63040 "AT5G63040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 191/324 (58%), Positives = 220/324 (67%)

Query:    41 YDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSVLLAISEDQSEYVEINPNAPEQLSQHSN 100
             Y  L L+  K+   H+     K     +KR  + LA SE++  Y E   N P+ +S    
Sbjct:    42 YHSLHLKTDKIGSLHISSRGQKPSEVSRKRTYLPLATSEEKFHYTEDTTNDPDTVSPQIG 101

Query:   101 LQDISSSGSPSIQYEGSNGKPGLISFYNRPYKREDEIRISTVQNSRSSIVWLVGPAVLVA 160
              +        +IQY  ++GKPG ISFYN   K ED I     Q+    ++WL+GPAVLV+
Sbjct:   102 TEATPRDDDSTIQYNRNDGKPGFISFYNPRNKTEDIIIPPETQSPWGRLLWLIGPAVLVS 161

Query:   161 SFIFPSLYLRKIISMVFEDSLLTDFLILFFTEALFYCGVAVFLLLIDRMRRSIRPYFATD 220
             SFI P +YLR+I+S VFEDSLLTDFLILFFTEALFYCGVA FLL+IDR R+         
Sbjct:   162 SFILPPVYLRRIVSAVFEDSLLTDFLILFFTEALFYCGVAAFLLIIDRSRKGSGK---VP 218

Query:   221 DNRALHPQLGQRISSVAALVLSLIIPMVTMGLVWPWTGPAASATLAPYLVGIVVQFAFEQ 280
              NR    QLGQRISSVA LVLSL+IPMVTMG VWPWTGPAASATLAPYLVGIVVQFAFEQ
Sbjct:   219 QNRINPSQLGQRISSVATLVLSLMIPMVTMGFVWPWTGPAASATLAPYLVGIVVQFAFEQ 278

Query:   281 YARYRKSPSWPVIPIIFQVYRLHQLNRAAQLVTALSFTVRGAEATSHNLAINNSXXXXXX 340
             YARYR SPS P+IPIIFQVYRLHQLNRAAQLVTALSFTV+GAEAT +NLAI  S      
Sbjct:   279 YARYRNSPSSPIIPIIFQVYRLHQLNRAAQLVTALSFTVKGAEATVNNLAIKKSLGTLLN 338

Query:   341 XXXXXXXICIWSLSSFLMRYFPPT 364
                    I IWS+SSFLM    P+
Sbjct:   339 VIQVLGVISIWSISSFLMWLSSPS 362




GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM;IDA
TAIR|locus:2198070 AT1G48460 "AT1G48460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103326 AT3G60590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query369
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 80/465 (17%), Positives = 137/465 (29%), Gaps = 151/465 (32%)

Query: 15  NSLSSPL-LSRLSSMMTLSQRPYDRQGYDILQLQNSKVNPCHLVYGPLKLQGGFQKRQSV 73
           N + +   +SRL   + L      RQ      L   +     L+ G      G  K  + 
Sbjct: 123 NQVFAKYNVSRLQPYLKL------RQA-----LLELRPAKNVLIDG----VLGSGK--TW 165

Query: 74  LLAISEDQSEYVEI------------NPNAPEQLSQHSNLQDIS----------SSGSPS 111
           + A+    S  V+             N N+PE + +   LQ +           S  S +
Sbjct: 166 V-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPNWTSRSDHSSN 222

Query: 112 IQYEGSNGKPGLIS-FYNRPYKRE----DEIRISTVQNSRSSIVW---LVGPAVLVAS-- 161
           I+    + +  L     ++PY+             VQN++    W    +   +L+ +  
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLN-----VQNAK---AWNAFNLSCKILLTTRF 274

Query: 162 ---FIFPSLYLRKIISMVFEDSLLTDFLILFFTEALF--YCGVAVF----------LLLI 206
                F S      IS+      LT        ++L   Y                   +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTTNPRRL 330

Query: 207 DRMRRSIRPYFATDDN--RALHPQLGQRI-SSVAAL----------VLSLI-----IPMV 248
             +  SIR   AT DN       +L   I SS+  L           LS+      IP +
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 249 TMGLVWPWTGPA---------ASATLA-----PYLVGI-VVQFAF--------------- 278
            + L+W     +            +L         + I  +                   
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 279 EQYARYRKSPSWPVIPI-----IFQ--VYRLHQLNRA--AQLVTALSFTVRGAEAT-SHN 328
           + Y   +   S  +IP       +    + L  +       L   +    R  E    H+
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 329 LAINNSLGALLNVLQLL----GVIC---------IWSLSSFLMRY 360
               N+ G++LN LQ L      IC         + ++  FL + 
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00